Citrus Sinensis ID: 010769

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
Protein Sequence
MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAKQSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSVI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEcccccEEEEccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEEEEEEccccccccEEEEccEEEcccccccccccccccccccccEEEEEEccccEEEEEccccccccccEEEEEccccEEEcccccccccccccccccccccEEEEEEcccccEEEEEccccccEEEEEccccEEEcccccccccEEEEEEccccccEEEEccccccEEEEEccccccccccccccccEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccEEEEcccccEEEEEEccccccEEEEEEccccEEEEEccccccEEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccHHHHHHccccccccccccccHccccccEEEEcccccccEEEEccccccccccEEEEcccccEEEEEcccccEEEEEEEEEcccccEEEEEEcccccEEccccccEcEEEccEEEcccccEEEEEccccEEEEEEccccccccccEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEEcccEEEEEEccccEEEEEEccccccEEEEEEccccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
miaavswvpkgaskavpeeaeppskEEIEEIINSgaleheieddrsedddedmevedeakqsdDASQAVAVANALgktsksknsgtkfddiTDGLkeldmdhyddeddgvEIFGKGLGDlyyasnqmdpylkdkddedsedledmtinpndaVIVCARNEDDVSHLEVYILEesdggdpnlyvhhhiiipafplcmawldcplkdrekgnfmavgsmepaieiwdldvidevqphvilggideekkkkkskkgkkssikykkgshtdsvlgLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVawnhhspqillsgsfdrsvvmkdaristhsGFKWAVAADVeslawdphaehsfvvsledgtikgfdirtaksdpdstsqqssftlhahdkavctisynplvpnllatgstdkMVKLWdlsnnqpsciasrnpkagaVFSVafsedspfvlaiggskgklEIWDTLsdagisnrfskyskpkkpqsvi
Flexible Loop (DISEMBL)
miaavswvpkgaskavpeeaeppskEEIEEIInsgaleheieddRSEDDDEDMEVEDeakqsddasQAVAVANalgktsksknsgtkfddITDGLKELDMDHYDDEDDGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHvilggideekkkkkskkgkkssikykkgshtdsvlglAWNKEFRNILASasadkqvkIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSdagisnrfskyskpkkpqsvi
Low Complexity Region (SEG)
MIAAVSWVPKGaskavpeeaeppskeeieeiiNSGALeheieddrsedddedmevedeAKQSDDASQAVAVANALgktsksknsgtkFDDITDGLKELdmdhyddeddGVEIFGKGLGDLYYASNQMDPYlkdkddedsedledMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEkkkkkskkgkkssikykkgsHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSVI
Disordered region (IsUnstruct)
**********************************************************************************************************DDGVEIFGKGLGDLYYAS************************PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI**************************SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI****************TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG******************
Disordered Region (DISOPRED)
MIAAVSWVPKGASKAVPEEAEPPSKEEIEE*************************************************************TDGLKELDMDHYDDEDDGVE*F******LYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGID**K**KKS**G*KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK*SKP***QSVI
Disordered Region (DISEMBL)
MIAAVSWV******************EIEEIINSGALEHEI*************************QAVAVANALG********GTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE*******************SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA*************TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS************
Disordered Region (DISPRO)
MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDR*******************************************DDITDGLKELDMDHYDDEDDGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAKQSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSVI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	502	2.2.26 [Sep-21-2011]
Q9P775	516	Uncharacterized WD repeat	yes	no	0.906	0.881	0.352	8e-76
Q2HJ56	500	Periodic tryptophan prote	yes	no	0.920	0.924	0.352	7e-74
Q13610	501	Periodic tryptophan prote	yes	no	0.922	0.924	0.346	4e-72
Q99LL5	501	Periodic tryptophan prote	yes	no	0.916	0.918	0.351	5e-72
P21304	576	Periodic tryptophan prote	yes	no	0.924	0.805	0.327	1e-60
Q00808	1356	Vegetative incompatibilit	no	no	0.364	0.134	0.351	1e-15
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.404	0.161	0.321	6e-15
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.350	0.115	0.282	1e-13
Q54SD4	423	Probable histone-binding	no	no	0.386	0.458	0.302	1e-12
Q4WEI5	436	Histone acetyltransferase	no	no	0.438	0.504	0.275	2e-12

>sp|Q9P775|YBEG_SCHPO Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.16 PE=1 SV=1

 Score =  285 bits (728), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 177/502 (35%), Positives = 289/502 (57%), Gaps = 47/502 (9%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIE-EIINSGALEHEIEDDRSEDDDEDMEVEDEA 59
           ++++V++VP+G +   P+  +    +EIE E IN  + + ++ED R+   D    +ED  
Sbjct: 3   IVSSVAFVPRGYASEFPKSYD---IDEIEYERINQLS-KLKLEDARA---DLQSSMEDSN 55

Query: 60  KQSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDG------VEIF 113
           K + +  +    A  + +TS         +++ D LK  ++D YDD+++         +F
Sbjct: 56  KANGNGEETTDGAEGVLQTS---------EEVDDELKVYNLDTYDDDEEEAETEGPAAMF 106

Query: 114 GKGLGDLYYASNQMDPYLK-DKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILE 172
               G  Y+ + + DPY+  D  ++D  + E+M I P D++++ AR ED++SH+EVY+ E
Sbjct: 107 SNIRGLAYHENGEKDPYITIDPQEQDDLEREEMQILPTDSLLLAARTEDNLSHVEVYVYE 166

Query: 173 ESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL--KDREKGNFMAVGSMEPAIEIWDLDVID 230
            ++    NLYVHH  ++P FPLC+ WLD  +   D   GN++AVG+ +P IEIWDLD+ID
Sbjct: 167 PTE---ENLYVHHDFLLPTFPLCLEWLDYKVGTSDNAPGNYVAVGTFDPEIEIWDLDIID 223

Query: 231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290
            V P  +LG         +  K KK S K     HTD+VL L+ N+   N+L S SAD  
Sbjct: 224 AVYPAAVLGA-----GASQVNKKKKKSKKINDSYHTDAVLALSSNRNAHNLLVSGSADTT 278

Query: 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKW 349
           +K+WD++   C  +  +H+DKV  + W   +P +LLSGS+D++  + D R+    S F+ 
Sbjct: 279 LKLWDLSTCNCVKSFTYHSDKVSCLDWYSKAPSVLLSGSYDKTAKIADLRLEEAPSSFQ- 337

Query: 350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT 409
            V +DVE++AWD H+E++F +  ++G +   D R           +S + L AHD  +  
Sbjct: 338 -VTSDVENVAWDQHSENNFFIGTDNGIVYYCDARNLS--------KSVWQLQAHDGPISC 388

Query: 410 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED--SPFVLAI 467
           +S NP VP+ +ATGSTD++VKLW+ S++ P  + SR+   G VF+ +F+ D  + F LA 
Sbjct: 389 LSVNPSVPSFVATGSTDRVVKLWNTSDSSPKMVVSRDLDVGRVFTCSFTTDESTAFHLAA 448

Query: 468 GGSKGKLEIWDTLSDAGISNRF 489
            GSKG + +WDT ++ G+   F
Sbjct: 449 SGSKGVVRVWDTATNPGVRKAF 470

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2HJ56|PWP1_BOVIN Periodic tryptophan protein 1 homolog OS=Bos taurus GN=PWP1 PE=2 SV=1

 Score =  278 bits (711), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 176/499 (35%), Positives = 267/499 (53%), Gaps = 37/499 (7%)

Query: 2   IAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAKQ 61
           +  V+WV  G +K  P++ E  SKEE++ +I     + +++++   D+ E     ++  Q
Sbjct: 7   VTCVAWVRCGVAKETPDKVEL-SKEEVKRLIAEA--KEKLQEEGGSDEQETGNPSEDGMQ 63

Query: 62  SDDASQAVAVANALGKTSKSKNSGTKFDDIT---DGLKELDMDHYDDEDD-GVEIFGKGL 117
           S         A    +  +    G   DD T   D L E D+D YD+E D   E  G+ L
Sbjct: 64  S---------ARTQARPREPLEDGDPEDDRTLDDDELAEYDLDKYDEEGDPDAETLGESL 114

Query: 118 -GDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG 176
            G   Y SN  DPY+  KD E  E  ED  I P+D +IVC R E D  +LEV++  + + 
Sbjct: 115 LGLTVYGSNDQDPYVTLKDTEQYE-REDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEED 173

Query: 177 GDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPH 235
              + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD++D ++P 
Sbjct: 174 ---SFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEP- 229

Query: 236 VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295
            +     +  KKKK K  K SS       HTD+VL L+WNK  RN+LASASAD  V +WD
Sbjct: 230 -VFTLGSKLSKKKKKKGKKNSSAD----GHTDAVLDLSWNKLVRNVLASASADNTVILWD 284

Query: 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV 355
           ++ GK   +L  HTDKVQ + ++    Q L+SGS+D+SV + D R    S   W  +  +
Sbjct: 285 MSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRSPEESHRMWRFSGQI 344

Query: 356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415
           E + W+  +   F+ S +DG +   D R         S +  FTL+AH+  +  +  +  
Sbjct: 345 ERVTWNHFSPCHFLASTDDGFVYNLDAR---------SDKPIFTLNAHNDEISGLDLSSQ 395

Query: 416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 475
           +   L T S DK VK+WD+  ++PS + SR+ K G +F  +   D PF+ A GG K  L 
Sbjct: 396 IKGCLVTASADKYVKIWDILGDRPSLVHSRDMKMGVLFCSSCCPDLPFIYAFGGQKEGLR 455

Query: 476 IWDTLSDAGISNRFSKYSK 494
           +WD  + + ++  F +  +
Sbjct: 456 VWDISTVSSVNEAFGRRER 474

May play an important role in cell growth and/or transcription.

Bos taurus (taxid: 9913)

>sp|Q13610|PWP1_HUMAN Periodic tryptophan protein 1 homolog OS=Homo sapiens GN=PWP1 PE=1 SV=1

 Score =  272 bits (696), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 173/499 (34%), Positives = 263/499 (52%), Gaps = 36/499 (7%)

Query: 2   IAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAKQ 61
           +  V+WV  G +K  P++ E  SKEE++ +I           ++ +++    + E+    
Sbjct: 7   VTCVAWVRCGVAKETPDKVEL-SKEEVKRLIAEAK-------EKLQEEGGGSDEEETGSP 58

Query: 62  SDDASQAVAVANALGKTSKSKNSGTKFDDIT---DGLKELDMDHYDDEDD-GVEIFGKGL 117
           S+D  Q+   A    +  +    G   DD T   D L E D+D YD+E D   E  G+ L
Sbjct: 59  SEDGMQS---ARTQARPREPLEDGDPEDDRTLDDDELAEYDLDKYDEEGDPDAETLGESL 115

Query: 118 -GDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG 176
            G   Y SN  DPY+  KD E  E  ED  I P+D +IVC R E D  +LEV++  + + 
Sbjct: 116 LGLTVYGSNDQDPYVTLKDTEQYER-EDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEED 174

Query: 177 GDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPH 235
              + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD++D ++P 
Sbjct: 175 ---SFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEP- 230

Query: 236 VILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295
                +     K   KK KK         HTD+VL L+WNK  RN+LASASAD  V +WD
Sbjct: 231 -----VFTLGSKLSKKKKKKGKKSSSAEGHTDAVLDLSWNKLIRNVLASASADNTVILWD 285

Query: 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV 355
           ++ GK   +L  HTDKVQ + ++    Q L+SGS+D+SV + D R    S   W  +  +
Sbjct: 286 MSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRSPDESHRMWRFSGQI 345

Query: 356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415
           E + W+  +   F+ S +DG +   D R         S +  FTL+AH+  +  +  +  
Sbjct: 346 ERVTWNHFSPCHFLASTDDGFVYNLDAR---------SDKPIFTLNAHNDEISGLDLSSQ 396

Query: 416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 475
           +   L T S DK VK+WD+  ++PS + SR+ K G +F  +   D PF+ A GG K  L 
Sbjct: 397 IKGCLVTASADKYVKIWDILGDRPSLVHSRDMKMGVLFCSSCCPDLPFIYAFGGQKEGLR 456

Query: 476 IWDTLSDAGISNRFSKYSK 494
           +WD  + + ++  F +  +
Sbjct: 457 VWDISTVSSVNEAFGRRER 475

May play an important role in cell growth and/or transcription.

Homo sapiens (taxid: 9606)

>sp|Q99LL5|PWP1_MOUSE Periodic tryptophan protein 1 homolog OS=Mus musculus GN=Pwp1 PE=1 SV=1

 Score =  272 bits (695), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 176/501 (35%), Positives = 262/501 (52%), Gaps = 41/501 (8%)

Query: 2   IAAVSWVPKGASKAVPEEAEPPSKEEIEEIINS--GALEHEIEDDRSEDDDEDMEVEDEA 59
           +  V+WV +G +K  P++ E  SKEE+  +I    G L+ E             E E+  
Sbjct: 7   VTCVAWVRRGVAKETPDKVEL-SKEEVNRLIAEAKGKLQEEGG----------SEEEEAG 55

Query: 60  KQSDDASQAVAVANALGKTSKSKNSGTKFDDIT---DGLKELDMDHYDDEDD-GVEIFGK 115
             S+D  Q+           +S   G   DD T   D L   D+D+YD+ED+   E  G+
Sbjct: 56  NPSEDGMQS---GPTQAPPRESLEDGDPQDDRTLDDDELAGYDLDNYDEEDNPDAETIGE 112

Query: 116 GL-GDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES 174
            L G   Y SN  DPY+  KD E  E  ED  I P D +IVC R E +  +LEV++  + 
Sbjct: 113 SLLGLTVYGSNDQDPYVTLKDTEQYEH-EDFLIKPTDNLIVCGRAEQEQCNLEVHVYNQE 171

Query: 175 DGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQ 233
           +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD++D ++
Sbjct: 172 E---ESFYVHHDILLSAYPLSVEWLNFDPSPDASTGNYIAVGNMTPVIEVWDLDIVDSLE 228

Query: 234 PHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293
           P      +     K   KK KK         HTD+VL L+WNK  RN+LASASAD  V +
Sbjct: 229 P------VFTLGSKLSKKKKKKGKKSSSAEGHTDAVLDLSWNKTVRNVLASASADSTVVL 282

Query: 294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353
           WD++ GK    L  HTDKVQ + ++    Q L+SGS+D+SV + D R  + +  +W  + 
Sbjct: 283 WDLSVGKSVARLTAHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRDPSQNHRQWRFSG 342

Query: 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 413
            +E + W+  +   F+ S +DG +   D R         S +  FTL+AH+  +  +  +
Sbjct: 343 QIERVTWNHFSPCHFLASTDDGFVYNLDAR---------SDKPIFTLNAHNDEISGLDLS 393

Query: 414 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 473
             +   L T S DK VK+WD+  ++PS I SR+ K G +F  +   D PFV A GG K  
Sbjct: 394 SQIKGCLVTASADKFVKIWDILGDRPSLIHSRDMKMGVLFCSSCCPDLPFVYAFGGQKEG 453

Query: 474 LEIWDTLSDAGISNRFSKYSK 494
           L +WD  + + ++  F +  +
Sbjct: 454 LRVWDISTVSSVNEAFGRRER 474

May play an important role in cell growth and/or transcription.

Mus musculus (taxid: 10090)

>sp|P21304|PWP1_YEAST Periodic tryptophan protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PWP1 PE=1 SV=1

 Score =  234 bits (598), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 177/541 (32%), Positives = 275/541 (50%), Gaps = 77/541 (14%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MI+A +WVP+G S   PE+      EE+E I     L   ++D ++  +    E E E+ 
Sbjct: 1   MISATNWVPRGFSSEFPEKY-VLDDEEVERINQLAQLN--LDDAKATLE----EAEGESG 53

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
             DDA        A G ++K K+      DI D LKE +++ YDDE+      GK +   
Sbjct: 54  VEDDA--------ATGSSNKLKDQL----DIDDDLKEYNLEEYDDEEIADNEGGKDVSMF 101

Query: 121 YYASNQMD-----------PYLKDKDDEDS-EDLEDMTINPNDAVIVCARNEDDVSHLEV 168
              SN  D           PY+   + EDS E+ +++ + P+D +++ AR EDDVS+L++
Sbjct: 102 PGLSNDSDVKFHEGEKGEDPYISLPNQEDSQEEKQELQVYPSDNLVLAARTEDDVSYLDI 161

Query: 169 YI-------------LEESDGGDPN----------LYVHHHIIIPAFPLCMAWLDCPL-- 203
           Y+             +EE D  DP+          LYVHH +++PAFPLC+ WLD  +  
Sbjct: 162 YVYDDGAGFHSSDIPVEEGDEADPDVARGLVRDPALYVHHDLMLPAFPLCVEWLDYKVGS 221

Query: 204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG-IDEEK-KKKKSKKGKKSSIKYK 261
              E  N+ A+G+ +P IEIW+LD +D+  P +ILG  +D      K  KK KKS   + 
Sbjct: 222 NSEEAANYAAIGTFDPQIEIWNLDCVDKAFPDMILGEPLDNSMVSLKSKKKKKKSKTGHI 281

Query: 262 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNH 319
              HTD+VL +A NK FR++LAS SAD  VK+WD+ +G    +L   H    V +  W+ 
Sbjct: 282 TTHHTDAVLSMAHNKYFRSVLASTSADHTVKLWDLNSGNAARSLASIHSNKNVSSSEWHM 341

Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAEHSFVVSLEDGTI 377
            +  ILL+G +D  V + D RIS  S     W+  A  E       +E+  +   + G +
Sbjct: 342 LNGSILLTGGYDSRVALTDVRISDESQMSKYWSAMAGEEIETVTFASENIILCGTDSGNV 401

Query: 378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLW---- 432
             FDIR      ++ +++  +TL AHD  + T+  N  +P +++TG+  +K VKLW    
Sbjct: 402 YSFDIR------NNENRKPVWTLKAHDAGISTLCSNKFIPGMMSTGAMGEKTVKLWKFPL 455

Query: 433 -DLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPF--VLAIGGSKGKLEIWDTLSDAGISNR 488
            D +N + PS + SR+   G V + +F+ D      + IGG    L++WD  ++  +   
Sbjct: 456 DDATNTKGPSMVLSRDFDVGNVLTSSFAPDIEVAGTMVIGGVNKVLKLWDVFTNRSVRKS 515

Query: 489 F 489
           F
Sbjct: 516 F 516

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 19/202 (9%)

Query: 282  LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDA 339
            +AS S D  +KIWD  +G C  TLE H D V +VA+   SP  Q + SGS D ++ + DA
Sbjct: 1066 VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAF---SPDGQRVASGSIDGTIKIWDA 1122

Query: 340  RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
               T +         V S+A+ P  +     S+ DGTIK +         D+ S   + T
Sbjct: 1123 ASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSI-DGTIKIW---------DAASGTCTQT 1172

Query: 400  LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459
            L  H   V +++++P     +A+GS+DK +K+WD ++   +C  +     G V SVAFS 
Sbjct: 1173 LEGHGGWVQSVAFSP-DGQRVASGSSDKTIKIWDTASG--TCTQTLEGHGGWVQSVAFSP 1229

Query: 460  DSPFVLAIGGSKGKLEIWDTLS 481
            D   V A G S   ++IWDT S
Sbjct: 1230 DGQRV-ASGSSDNTIKIWDTAS 1250

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 82.8 bits (203), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 24/227 (10%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           HTD V  +A++ +  N LAS++AD  +K+WDV+ GKC  TL+ HT  V++VA++    Q 
Sbjct: 767 HTDWVRCVAFSPD-GNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADG-QT 824

Query: 325 LLSGSFDRSVVMKDAR----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF 380
           L SGS DR++ + +      + T+ G        V S+A+ P ++   V    D TIK +
Sbjct: 825 LASGSGDRTIKIWNYHTGECLKTYIGH----TNSVYSIAYSPDSK-ILVSGSGDRTIKLW 879

Query: 381 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 440
           D +T              TLH H   VC+++++P     LA  S D+ V+LW+    Q  
Sbjct: 880 DCQTHICIK---------TLHGHTNEVCSVAFSP-DGQTLACVSLDQSVRLWNCRTGQ-- 927

Query: 441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487
           C+ +          VAFS D   +LA G +   +++WD  +   IS+
Sbjct: 928 CLKAWYGNTDWALPVAFSPDRQ-ILASGSNDKTVKLWDWQTGKYISS 973

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 29/205 (14%)

Query: 281  ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340
            +LAS S D+ V++WD+++G+C  T + HT +V++V ++ +S  +L SGS D++V + D  
Sbjct: 920  MLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSL-MLASGSSDQTVRLWDIS 978

Query: 341  -------ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS 393
                      H+G+ ++VA +++                 D T++ +DI         +S
Sbjct: 979  SGECLYIFQGHTGWVYSVAFNLDG--------SMLATGSGDQTVRLWDI---------SS 1021

Query: 394  QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 453
             Q  +    H   V ++ ++     +LA+GS D+ V+LWD+S+   +C+ +       V 
Sbjct: 1022 SQCFYIFQGHTSCVRSVVFSS-DGAMLASGSDDQTVRLWDISSG--NCLYTLQGHTSCVR 1078

Query: 454  SVAFSEDSPFVLAIGGSKGKLEIWD 478
            SV FS D   +LA GG    + +WD
Sbjct: 1079 SVVFSPDGA-MLASGGDDQIVRLWD 1102

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q54SD4|RBBD_DICDI Probable histone-binding protein rbbD OS=Dictyostelium discoideum GN=rbbD PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 31/225 (13%)

Query: 279 RNILASASADKQVKIWDVAA--------GKC--NLTLEHHTDKVQAVAWNHHSPQILLSG 328
            +I+A+ +   +V I+D           GKC  NL L  H  +   ++WN      LLS 
Sbjct: 134 HSIIATKTVSSEVYIFDTTKHPLEPTPDGKCSPNLKLTGHKKEGYGISWNPRKEGHLLSC 193

Query: 329 SFDRSVVMKDARISTHS-------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 381
           S D+S+ M D   ++ S              + VE +AW    +  F    +D  +  +D
Sbjct: 194 SDDQSICMWDISAASKSDSTLDALNIYNGHTSIVEDVAWHYIHDTFFGSVGDDKKLMIWD 253

Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN--NQP 439
            RT          +    + AH+  V  +S+NP    L+ATGSTDK V LWD+ N  N+ 
Sbjct: 254 TRTGT--------KPIHVVEAHNSEVNCLSFNPFCEFLVATGSTDKTVALWDMRNLGNRL 305

Query: 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484
             + S   +   VF V FS  +  VLA  GS  ++ +WD LS  G
Sbjct: 306 HSLISHTDE---VFQVQFSPHNETVLASCGSDRRVNVWD-LSRIG 346

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism.

Dictyostelium discoideum (taxid: 44689)

>sp|Q4WEI5|HAT2_ASPFU Histone acetyltransferase type B subunit 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=hat2 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 41/261 (15%)

Query: 250 SKKGKKSSIKY---KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD------VAAGK 300
           S K     IK+   +K  H   V    +  +  NI+A+   D +V +WD      +  G+
Sbjct: 119 SSKKAPMEIKFNIVQKIDHKGEVNKARYQPQNPNIIATMCTDGRVMVWDRSKHPSLPTGQ 178

Query: 301 CNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSV-------------VMKDARISTHS 345
            N  +E   HT +   ++W+ H+   L +GS D++V             ++K +R  TH 
Sbjct: 179 VNPQMELIGHTKEGFGLSWSPHTAGQLATGSEDKTVRIWDLTTYSKGNKLLKPSRTYTHH 238

Query: 346 GFKWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 403
               ++  DV+      H  HS ++    +D T++  DIR ++     T++ ++ T   H
Sbjct: 239 S---SIVNDVQY-----HPLHSSLIGTVSDDITLQILDIRESE-----TTRAAASTEGQH 285

Query: 404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 463
             A+  I++NP    +LATGS DK + LWDL N + + + S      +V S+++      
Sbjct: 286 RDAINAIAFNPAAETVLATGSADKTIGLWDLRNLK-TKLHSLESHTDSVTSISWHPFEEA 344

Query: 464 VLAIGGSKGKLEIWDTLSDAG 484
           VLA      K+  WD LS AG
Sbjct: 345 VLASASYDRKIAFWD-LSRAG 364

Regulatory subunit of the histone acetylase B (HAT-B) complex. The complex acetylates 'Lys-12' of histone H4 which is required for telomeric silencing.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
255561012	493	WD-repeat protein, putative [Ricinus com	0.976	0.993	0.753	0.0
224103561	489	predicted protein [Populus trichocarpa]	0.964	0.989	0.744	0.0
225431285	493	PREDICTED: uncharacterized WD repeat-con	0.964	0.981	0.738	0.0
297735093	492	unnamed protein product [Vitis vinifera]	0.962	0.981	0.734	0.0
449517174	492	PREDICTED: uncharacterized WD repeat-con	0.976	0.995	0.672	0.0
449462697	493	PREDICTED: uncharacterized WD repeat-con	0.976	0.993	0.668	0.0
357495421	485	Periodic tryptophan protein-like protein	0.960	0.993	0.646	1e-179
363807774	477	uncharacterized protein LOC100800393 [Gl	0.934	0.983	0.650	1e-179
356551466	478	PREDICTED: uncharacterized WD repeat-con	0.942	0.989	0.649	1e-176
147840438	485	hypothetical protein VITISV_014600 [Viti	0.890	0.921	0.647	1e-172

>gi|255561012|ref|XP_002521518.1| WD-repeat protein, putative [Ricinus communis] gi|223539196|gb|EEF40789.1| WD-repeat protein, putative [Ricinus communis]

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/499 (75%), Positives = 430/499 (86%), Gaps = 9/499 (1%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MIAAVSWVPKG SK+VP  AEPPSKEEIEE+INSGAL+   ED  SE DDE+ME+ D +K
Sbjct: 1   MIAAVSWVPKGVSKSVPAVAEPPSKEEIEEMINSGALDRG-EDSGSEKDDENMEI-DNSK 58

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
           Q+++  QA+AVA+ALG+  KS     KFDDIT+GLKELDMD+YD+ED+G+E+F  GLGDL
Sbjct: 59  QNNEVDQALAVADALGRAPKST---IKFDDITEGLKELDMDNYDEEDEGIELFSTGLGDL 115

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN+ DPYL D DDEDSEDLEDMTINP DAVIVCARNED+ SHLEV+I+EESD GD N
Sbjct: 116 YYPSNEADPYLNDNDDEDSEDLEDMTINPKDAVIVCARNEDEFSHLEVWIIEESDDGDSN 175

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           +YVHH II+ AFPLC AWLDCPLK  EKGNF+AVGSMEP+IEIWDLD++DEVQP V+LGG
Sbjct: 176 MYVHHDIILSAFPLCTAWLDCPLKGAEKGNFIAVGSMEPSIEIWDLDIVDEVQPSVVLGG 235

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
           + E+KKKKK    KK+SIKYK+GSHTDSVLGLAWNK+FRNILASASADKQVKIWDVA GK
Sbjct: 236 VAEKKKKKKG---KKTSIKYKEGSHTDSVLGLAWNKQFRNILASASADKQVKIWDVATGK 292

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360
           C++T+EHHTDKVQAVAWN+H PQ+LLSGSFD SVV+KD RI TH GFKW V ADVESLAW
Sbjct: 293 CDITMEHHTDKVQAVAWNYHEPQVLLSGSFDHSVVLKDGRIPTHPGFKWYVTADVESLAW 352

Query: 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
           DPH  HSFVVSLEDGT++GFDIRTAK+D  S S + SFTLHAHDKAVCT+SYNP VPNLL
Sbjct: 353 DPHNTHSFVVSLEDGTVQGFDIRTAKTDSTSDS-KPSFTLHAHDKAVCTVSYNPSVPNLL 411

Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           ATGSTDKMVKLWDLSNNQPSC+AS++PKAG +FS++FSEDSPF LAIGGSKGKL++WD  
Sbjct: 412 ATGSTDKMVKLWDLSNNQPSCVASKDPKAGGIFSISFSEDSPFSLAIGGSKGKLQVWDIS 471

Query: 481 SDAGISNRFSKYSKPKKPQ 499
           SDAG+S RF   SK   P 
Sbjct: 472 SDAGVSRRFMNSSKQNGPH 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103561|ref|XP_002334041.1| predicted protein [Populus trichocarpa] gi|222839644|gb|EEE77967.1| predicted protein [Populus trichocarpa]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/489 (74%), Positives = 422/489 (86%), Gaps = 5/489 (1%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MIAAVSWVPKG +K+VP  A+PPSKEEIEE+I +  LE   ED  SE+DD++M+V   AK
Sbjct: 1   MIAAVSWVPKGVAKSVPGVADPPSKEEIEELIKASDLERSGEDSGSEEDDQEMDV-GAAK 59

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
           Q+ + SQA+AVANALG++SK   S TKFDDI DGLKELDMD+YDDE+DG+E+F  GLGDL
Sbjct: 60  QTGEVSQALAVANALGRSSKVNKSETKFDDIADGLKELDMDNYDDEEDGIELFSTGLGDL 119

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN MDPY+KD+DD+DSEDLEDM I P DAVIVCA N+D+ S+LEV+IL+E+  GD N
Sbjct: 120 YYPSNSMDPYIKDEDDDDSEDLEDMAIKPKDAVIVCACNKDEFSNLEVWILDETSDGDSN 179

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           +YVHH + + AFPLC AWLDCPLK  EKGNF+AVGSMEPAIEIWDLD+IDEVQP V+LGG
Sbjct: 180 IYVHHEVPLSAFPLCTAWLDCPLKGGEKGNFIAVGSMEPAIEIWDLDIIDEVQPAVVLGG 239

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
           I+E+KKKKK    KK SIKYK+GSHTDSVLGLAWNK FRNILASASADKQVKIWDV AGK
Sbjct: 240 IEEKKKKKKG---KKVSIKYKEGSHTDSVLGLAWNKHFRNILASASADKQVKIWDVDAGK 296

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360
           C++T+EHHTDKVQAVAWNHH PQ+LLSGSFDRSVVMKD R+ +  GFKW+V ADVESLAW
Sbjct: 297 CDITMEHHTDKVQAVAWNHHEPQVLLSGSFDRSVVMKDGRLPSDPGFKWSVTADVESLAW 356

Query: 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
           DPH +H FVVSLEDGT++GFDIR AKS   S+  + SFTLHAHDKAVCTISYNPL PNLL
Sbjct: 357 DPHDKHLFVVSLEDGTVQGFDIRAAKSG-SSSDLKPSFTLHAHDKAVCTISYNPLAPNLL 415

Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           ATGSTDKMVKLWDLSNNQPSC+ S+NPKAGA+FSV+FSED+PF+LAIGGSKG LE+WDTL
Sbjct: 416 ATGSTDKMVKLWDLSNNQPSCLVSKNPKAGAIFSVSFSEDNPFLLAIGGSKGTLELWDTL 475

Query: 481 SDAGISNRF 489
           S+A ++ RF
Sbjct: 476 SEAEVARRF 484

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431285|ref|XP_002275719.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Vitis vinifera]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/493 (73%), Positives = 421/493 (85%), Gaps = 9/493 (1%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MIAA+SW+PKG SK+VP   EPPSKEEIEE++ +GALE    D  SE+DDE M+  D AK
Sbjct: 1   MIAAISWIPKGVSKSVPSVVEPPSKEEIEEMLKNGALER-CGDSESEEDDEIMDA-DAAK 58

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
           Q D  + A+A A+ALGKT   KNSGT F DITDGLKELDMDHYDDEDDG+E+F KGLGD 
Sbjct: 59  QDDTVAHALAAADALGKT--PKNSGTSFLDITDGLKELDMDHYDDEDDGIEVFSKGLGDT 116

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN MDPYLKD +D+DSE++EDMTI   D+VIVCARN DD+SHLEV+I EES+ GD N
Sbjct: 117 YYPSNDMDPYLKDNNDDDSEEVEDMTIKAEDSVIVCARNADDLSHLEVWIFEESEDGDSN 176

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           +YVHH +IIPAFPLC AWLDCPLK  EKGNF+AVGSME +IEIWDLD+IDEVQP ++LGG
Sbjct: 177 MYVHHDVIIPAFPLCTAWLDCPLKGGEKGNFIAVGSMETSIEIWDLDIIDEVQPFLVLGG 236

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
           + E+KKKK      K+S+KY+KGSHTDSVLGLAWNKE+RNILASASADK VKIWDV +G+
Sbjct: 237 VAEKKKKKAK----KTSVKYRKGSHTDSVLGLAWNKEYRNILASASADKLVKIWDVTSGE 292

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360
           CN+T++HHTDKVQ VAWNHH PQ+LLSGSFDRSVVMKD RI TH+GFKW+V ADVESLAW
Sbjct: 293 CNITMDHHTDKVQVVAWNHHEPQVLLSGSFDRSVVMKDGRIPTHAGFKWSVTADVESLAW 352

Query: 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
           DPH  HSFVVSLEDGT++GFD+RTAKSD  S S+  +FTLHAHD+AVCTISYNPL PN L
Sbjct: 353 DPHTNHSFVVSLEDGTVQGFDVRTAKSDSASESKP-AFTLHAHDQAVCTISYNPLAPNFL 411

Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           ATGSTDKMVKLWDLSNNQPSC+A+RNPKAGAVFS++FSED PF+LAIGGS GKLE+WDTL
Sbjct: 412 ATGSTDKMVKLWDLSNNQPSCVATRNPKAGAVFSISFSEDRPFLLAIGGSTGKLEVWDTL 471

Query: 481 SDAGISNRFSKYS 493
           S+A +S +F  YS
Sbjct: 472 SEAPVSRKFGNYS 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735093|emb|CBI17455.3| unnamed protein product [Vitis vinifera]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/493 (73%), Positives = 419/493 (84%), Gaps = 10/493 (2%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MIAA+SW+PKG SK+VP   EPPSKEEIEE++ +GALE    D  SE+DDE M+  D AK
Sbjct: 1   MIAAISWIPKGVSKSVPSVVEPPSKEEIEEMLKNGALER-CGDSESEEDDEIMDA-DAAK 58

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
           Q D  + A+A A+ALGKT   KNSGT F DITDGLKELDMDHYDDEDDG+E+F KGLGD 
Sbjct: 59  QDDTVAHALAAADALGKT--PKNSGTSFLDITDGLKELDMDHYDDEDDGIEVFSKGLGDT 116

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN MDPYLKD +D+DSE++EDMTI   D+VIVCARN DD+SHLEV+I EES+ GD N
Sbjct: 117 YYPSNDMDPYLKDNNDDDSEEVEDMTIKAEDSVIVCARNADDLSHLEVWIFEESEDGDSN 176

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           +YVHH +IIPAFPLC AWLDCPLK  EKGNF+AVGSME +IEIWDLD+IDEVQP ++LGG
Sbjct: 177 MYVHHDVIIPAFPLCTAWLDCPLKGGEKGNFIAVGSMETSIEIWDLDIIDEVQPFLVLGG 236

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
           + E+KKKK      K+S+KY+KGSHTDSVLGLAWNKE+RNILASASADK VKIWDV +G+
Sbjct: 237 VAEKKKKKAK----KTSVKYRKGSHTDSVLGLAWNKEYRNILASASADKLVKIWDVTSGE 292

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360
           CN+T++HHTDK   VAWNHH PQ+LLSGSFDRSVVMKD RI TH+GFKW+V ADVESLAW
Sbjct: 293 CNITMDHHTDKA-IVAWNHHEPQVLLSGSFDRSVVMKDGRIPTHAGFKWSVTADVESLAW 351

Query: 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
           DPH  HSFVVSLEDGT++GFD+RTAKSD  S S+  +FTLHAHD+AVCTISYNPL PN L
Sbjct: 352 DPHTNHSFVVSLEDGTVQGFDVRTAKSDSASESKP-AFTLHAHDQAVCTISYNPLAPNFL 410

Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           ATGSTDKMVKLWDLSNNQPSC+A+RNPKAGAVFS++FSED PF+LAIGGS GKLE+WDTL
Sbjct: 411 ATGSTDKMVKLWDLSNNQPSCVATRNPKAGAVFSISFSEDRPFLLAIGGSTGKLEVWDTL 470

Query: 481 SDAGISNRFSKYS 493
           S+A +S +F  YS
Sbjct: 471 SEAPVSRKFGNYS 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517174|ref|XP_004165621.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Cucumis sativus]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/497 (67%), Positives = 409/497 (82%), Gaps = 7/497 (1%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDD-RSEDDDEDMEVEDEA 59
           MI+AVSWVPKG  K +P+ A+PPS+E I++++ S  +   +ED  +  DD+ D E  D  
Sbjct: 1   MISAVSWVPKGVCKPLPDLADPPSQETIDQLLKSNQV---VEDSSKHSDDEADEEDMDVE 57

Query: 60  KQSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGD 119
             +D+ + A+AVA ALGK+S+++N  TK+DDI + LKELDMD+YD+EDD +E+F  G GD
Sbjct: 58  DANDEIANALAVAQALGKSSETRNLETKYDDIAEELKELDMDNYDNEDDEIELFTSGAGD 117

Query: 120 LYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP 179
           +YY SN MDPYL+DKD +DSED+ED TI P DAVI+CA +ED+VS L+V+I E    GDP
Sbjct: 118 VYYPSNDMDPYLQDKDGDDSEDIEDETIKPTDAVIICACSEDNVSALQVWICEGYGAGDP 177

Query: 180 NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILG 239
           N Y+H  IIIPAFPLC AWLDCPLK  E+GNF+AVGSMEP+IEIWDLDVIDEVQP  +LG
Sbjct: 178 NFYIHRDIIIPAFPLCTAWLDCPLKGGERGNFIAVGSMEPSIEIWDLDVIDEVQPCAVLG 237

Query: 240 GIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299
           GI E+KKKKK    KK+S+ YK+ SHTDSVLGLAWNKEFRNILASASADKQVKIWDV+ G
Sbjct: 238 GIVEKKKKKKKG--KKTSVTYKENSHTDSVLGLAWNKEFRNILASASADKQVKIWDVSTG 295

Query: 300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 359
           +CN+T++HH DKVQAVAWNHHS Q+LLSGSFD SVV+KD R  +HSG+KW V ADVE+LA
Sbjct: 296 QCNITMQHHIDKVQAVAWNHHSSQVLLSGSFDHSVVLKDGRNPSHSGYKWQVTADVENLA 355

Query: 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 419
           WDPH EH FVVSLEDGT+KGFDIR A ++  S S ++SFTLHAH+KAVC++SY+P  PNL
Sbjct: 356 WDPHTEHMFVVSLEDGTVKGFDIRNATTESSSES-KASFTLHAHEKAVCSVSYSPSAPNL 414

Query: 420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479
           LATGSTDKMVKLWDLSNN+PSC+AS NPKAGAVFSV+FSED PF+LAIGGSKGKLE+WDT
Sbjct: 415 LATGSTDKMVKLWDLSNNEPSCLASTNPKAGAVFSVSFSEDCPFLLAIGGSKGKLEVWDT 474

Query: 480 LSDAGISNRFSKYSKPK 496
           L+DA +S ++  YS+ +
Sbjct: 475 LTDAAVSRKYGNYSQQR 491

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462697|ref|XP_004149077.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Cucumis sativus]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/498 (66%), Positives = 409/498 (82%), Gaps = 8/498 (1%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MI+AVSWVPKG  K +P+ A+PPS+E I++++ S  +   +ED     DDE  E + + +
Sbjct: 1   MISAVSWVPKGVCKPLPDLADPPSQETIDQLLKSNQV---VEDSSKHSDDEADEEDMDVE 57

Query: 61  QSDD--ASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLG 118
            ++D   + A+AVA ALGK+S+++N  TK+DDI + LKELDMD+YD+EDD +E+F  G G
Sbjct: 58  DANDEEIANALAVAQALGKSSETRNLETKYDDIAEELKELDMDNYDNEDDEIELFTSGAG 117

Query: 119 DLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD 178
           D+YY SN MDPYL+DKD +DSED+ED TI P DAVI+CA +ED+VS L+V+I E    GD
Sbjct: 118 DVYYPSNDMDPYLQDKDGDDSEDIEDETIKPTDAVIICACSEDNVSALQVWICEGYGVGD 177

Query: 179 PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 238
           PN Y+H  IIIPAFPLC AWLDCPLK  E+GNF+AVGSMEP+IEIWDLDVIDEVQP  +L
Sbjct: 178 PNFYIHRDIIIPAFPLCTAWLDCPLKGGERGNFIAVGSMEPSIEIWDLDVIDEVQPCAVL 237

Query: 239 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298
           GGI E+KKKKK    KK+S+ YK+ SHTDSVLGLAWNKEFRNILASASADKQVKIWDV+ 
Sbjct: 238 GGIVEKKKKKKKG--KKTSVTYKENSHTDSVLGLAWNKEFRNILASASADKQVKIWDVST 295

Query: 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358
           G+CN+T++HH DKVQAVAWNHHS Q+LLSGSFD SVV+KD R  +HSG+KW V ADVE+L
Sbjct: 296 GQCNITMQHHIDKVQAVAWNHHSSQVLLSGSFDHSVVLKDGRNPSHSGYKWQVTADVENL 355

Query: 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418
           AWDPH EH FVVSLEDGT+KGFDIR A ++  S S ++SFTLHAH+KAVC++SY+P  PN
Sbjct: 356 AWDPHTEHMFVVSLEDGTVKGFDIRNATTESSSES-KASFTLHAHEKAVCSVSYSPSAPN 414

Query: 419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           LLATGSTDKMVKLWDLSNN+PSC+AS NPKAGAVFSV+FSED PF+LAIGGSKGKLE+WD
Sbjct: 415 LLATGSTDKMVKLWDLSNNEPSCLASTNPKAGAVFSVSFSEDCPFLLAIGGSKGKLEVWD 474

Query: 479 TLSDAGISNRFSKYSKPK 496
           TL+DA +S ++  YS+ +
Sbjct: 475 TLTDAAVSRKYGNYSQQR 492

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495421|ref|XP_003617999.1| Periodic tryptophan protein-like protein [Medicago truncatula] gi|355519334|gb|AET00958.1| Periodic tryptophan protein-like protein [Medicago truncatula]

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 325/503 (64%), Positives = 401/503 (79%), Gaps = 21/503 (4%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MIAA+SW+PKG SKA P  AEPPSK+EIEEII+         +  +   DED   ED  K
Sbjct: 1   MIAAISWIPKGVSKAEPVFAEPPSKDEIEEIIS---------NTLTSVGDEDENEEDANK 51

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDD-GVEIFGKGLGD 119
           Q+D+ + A+ VA A+GK S   +     DDI+D LK+L+MD+YD+EDD G E+F  G GD
Sbjct: 52  QNDEVAHALTVAGAIGKPSNGNS-----DDISDALKDLNMDNYDEEDDKGFELFSSGNGD 106

Query: 120 LYYASNQMDPYLKDKDDE-DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD 178
           L+Y SN++DPY+ DK++E DSED+EDM INP D+V+VCAR EDDV+ LEV+ILE+++  D
Sbjct: 107 LFYQSNELDPYINDKNEEYDSEDMEDMIINPTDSVVVCARTEDDVNFLEVWILEDANTRD 166

Query: 179 PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 238
            NLY+HH IIIP FPLC AWLDCPLK  EKGNF+AVGSM P+IEIWDLDVIDEV+P V+L
Sbjct: 167 MNLYIHHDIIIPEFPLCTAWLDCPLKGGEKGNFLAVGSMGPSIEIWDLDVIDEVEPCVVL 226

Query: 239 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298
           G    ++K+KK K GKK S KYK+ SHTDSVLGLAWNKE+ N LASASADK+VKIWD+ A
Sbjct: 227 G---GKEKRKKGKNGKKKSAKYKEDSHTDSVLGLAWNKEYSNTLASASADKRVKIWDIVA 283

Query: 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358
           GKC +T++HH+DKVQAVAWNH + QILLSGSFD +V +KD R  +HSG+ W+V+ADVESL
Sbjct: 284 GKCTITMDHHSDKVQAVAWNHRAQQILLSGSFDHTVALKDVRTPSHSGYTWSVSADVESL 343

Query: 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418
           AWDPH EHSF VSLEDGTI+ FD+RTA S+  S  Q ++FTLHAHDK+V ++SYN   PN
Sbjct: 344 AWDPHTEHSFAVSLEDGTIQCFDVRTAMSNATSV-QNATFTLHAHDKSVTSVSYNTAAPN 402

Query: 419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           LLATGS DK VKLWDLSNNQPS +AS+ PKAGAVFS++FSED+PF+LAIGGSKGKL++WD
Sbjct: 403 LLATGSMDKTVKLWDLSNNQPSSVASKEPKAGAVFSISFSEDNPFLLAIGGSKGKLQLWD 462

Query: 479 TLSDAGISNRFSKYSKPKKPQSV 501
           TLSD GIS R+ K+++  +PQSV
Sbjct: 463 TLSDEGISRRYGKFNR-NQPQSV 484

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807774|ref|NP_001242432.1| uncharacterized protein LOC100800393 [Glycine max] gi|255642317|gb|ACU21423.1| unknown [Glycine max]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/492 (65%), Positives = 391/492 (79%), Gaps = 23/492 (4%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MI+A+SWVPKG SK+ P  A+PP +EEI+EII S          +S D D ++   DE  
Sbjct: 1   MISAISWVPKGVSKSEPVVADPPPEEEIQEIIASHTT-------KSGDSDNEVANNDEV- 52

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
                +QA+ VA+A+GK S         D+IT  LK+LDMD YDDED+G+E+F  G+GDL
Sbjct: 53  ----VAQALNVADAVGKASTGS-----CDEITLALKDLDMDRYDDEDEGIEVFSSGIGDL 103

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN MDPY+KDK+D+DS++LEDM INP D+VIV A  ED+VS+LEV ++E++D  + N
Sbjct: 104 YYPSNDMDPYIKDKNDDDSDELEDMIINPTDSVIVYACTEDEVSYLEVLVIEDADSSEMN 163

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           +Y HH+IIIPAFPLC AWLDCPLK  E+ NF+AVGSMEP+IEIWDLDVIDEVQP V+LGG
Sbjct: 164 VYPHHNIIIPAFPLCTAWLDCPLKGGERRNFIAVGSMEPSIEIWDLDVIDEVQPCVVLGG 223

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
            +E+KKK K K  K         SHTDSVLGLAWNKE+RNILASA ADK+VKIWDV AGK
Sbjct: 224 FEEKKKKGKKKPIKYK-----DDSHTDSVLGLAWNKEYRNILASAGADKRVKIWDVVAGK 278

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360
           C++T+EHH+DKVQAVAWNHH+PQ+LLSGSFD +VV+KD R+ +HSG+KW+V ADVESLAW
Sbjct: 279 CDITMEHHSDKVQAVAWNHHAPQVLLSGSFDHTVVLKDGRMPSHSGYKWSVTADVESLAW 338

Query: 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
           D H EHSFVVSLEDG +KGFDIRTA SD  S+   S+FTLHAHDKAV ++SYNP  PNLL
Sbjct: 339 DLHTEHSFVVSLEDGIVKGFDIRTANSD-SSSDLSSTFTLHAHDKAVTSVSYNPSAPNLL 397

Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           ATGS DK VKLWDLSNNQPSC+AS++P+AG +F ++FSED+PF+LAIGGSKGKL++WDTL
Sbjct: 398 ATGSMDKTVKLWDLSNNQPSCVASKSPRAGVIFKISFSEDNPFLLAIGGSKGKLQVWDTL 457

Query: 481 SDAGISNRFSKY 492
           SDAGIS R+  Y
Sbjct: 458 SDAGISRRYGNY 469

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551466|ref|XP_003544096.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Glycine max]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 322/496 (64%), Positives = 399/496 (80%), Gaps = 23/496 (4%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MI+A+SWVPKG SK         S+  + E      ++  I +  ++  D D E   +A 
Sbjct: 1   MISAISWVPKGVSK---------SELVVAEPPPEEEIQEIIANHATKSGDSDNE---DAN 48

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
             D  +QA+ VA+A+GK S    +GT  D+IT  LK+LDMD YDDED+G+E+F  G+GDL
Sbjct: 49  NDDVVAQALTVADAVGKAS----TGT-CDEITLALKDLDMDLYDDEDEGIEVFSSGIGDL 103

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN MDPY+KDK+D+DSE+LEDM INP D+V+V A  ED+VS+LEV+++E++D  + N
Sbjct: 104 YYPSNDMDPYIKDKNDDDSEELEDMIINPTDSVVVYACTEDEVSYLEVWVIEDADSSEMN 163

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           +Y HH+IIIPAFPLC AWLDCPLK  E+GNF+AVGSMEP+IEIWDLDVIDEVQP V+LGG
Sbjct: 164 MYPHHNIIIPAFPLCTAWLDCPLKGGERGNFIAVGSMEPSIEIWDLDVIDEVQPCVVLGG 223

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
            +E     + KKGKK SIKYK  SHTDSVLGLAWNKE+RNILASASADKQVKIWDV AGK
Sbjct: 224 FEE-----RKKKGKKKSIKYKDDSHTDSVLGLAWNKEYRNILASASADKQVKIWDVVAGK 278

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360
           C++T+EHH+DKVQAVAWNHH+PQ+LLSGSFD +VV++D R+ +HSG+KW+V ADVESLAW
Sbjct: 279 CDITMEHHSDKVQAVAWNHHAPQVLLSGSFDHTVVLRDGRMPSHSGYKWSVTADVESLAW 338

Query: 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
           DPH EHSFVVSLEDG +KGFDIRTA SD  S+   S+FTLHAHDKAV ++SYNP  PNLL
Sbjct: 339 DPHTEHSFVVSLEDGIVKGFDIRTANSD-SSSDPSSTFTLHAHDKAVTSVSYNPSAPNLL 397

Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           ATGS DK VKLWDLSNNQPSC+AS++P+AGA+F ++FSED+PF+LAIGGSKGKL++WDTL
Sbjct: 398 ATGSMDKTVKLWDLSNNQPSCVASKSPRAGAIFKISFSEDNPFLLAIGGSKGKLQVWDTL 457

Query: 481 SDAGISNRFSKYSKPK 496
           SD+GIS R+  Y+K +
Sbjct: 458 SDSGISRRYGNYNKNR 473

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840438|emb|CAN70683.1| hypothetical protein VITISV_014600 [Vitis vinifera]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 338/522 (64%), Positives = 392/522 (75%), Gaps = 75/522 (14%)

Query: 1   MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAK 60
           MIAA+SW+PKG SK+VP   EPPSKEEIEE++ +GALE    D  SE+DDE M+  D AK
Sbjct: 1   MIAAISWIPKGVSKSVPSVVEPPSKEEIEEMLKNGALER-CGDSESEEDDEIMDA-DAAK 58

Query: 61  QSDDASQAVAVANALGKTSKSKNSGTKFDDITDGLKELDMDHYDDEDDGVEIFGKGLGDL 120
           Q D  + A+A A+ALGKT K  NSGT F DITDGLKELDMDHYDDEDDG+E+F KGLGD 
Sbjct: 59  QDDTVAHALAAADALGKTPK--NSGTSFLDITDGLKELDMDHYDDEDDGIEVFSKGLGDT 116

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
           YY SN MDPYLKD +D+DSE++EDMTI   D+VIVCARN DD+SHLE             
Sbjct: 117 YYPSNDMDPYLKDNNDDDSEEVEDMTIKAEDSVIVCARNADDLSHLE------------- 163

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
                           AW           NF+AVGSME +IEIWDLD+IDEVQP ++LGG
Sbjct: 164 ----------------AW-----------NFIAVGSMETSIEIWDLDIIDEVQPFLVLGG 196

Query: 241 IDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299
           +  EKKKK SK+G+ +S+KY+KG SHTDSVLGLAWNKE+RNILASASADK VKIWDV +G
Sbjct: 197 V-AEKKKKXSKEGQLTSVKYRKGGSHTDSVLGLAWNKEYRNILASASADKLVKIWDVTSG 255

Query: 300 KCNLTLEHHTDK----------------------------VQAVAWNHHSPQILLSGSFD 331
           +CN+T++HHTDK                            VQAVAWNHH PQ+LLSGSFD
Sbjct: 256 ECNITMDHHTDKASVLQAHVEARFRARRLPNAXRRKKKKNVQAVAWNHHEPQVLLSGSFD 315

Query: 332 RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 391
           RSVVMKD RI TH+GFKW+V ADVESLAWDPH  HSFVVSLEDGT++GFD+RTAKSD  S
Sbjct: 316 RSVVMKDGRIPTHAGFKWSVTADVESLAWDPHTNHSFVVSLEDGTVQGFDVRTAKSDSAS 375

Query: 392 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 451
            S+ + FTLHAHD+AVCTISYNPL PN LATGSTDKMVKLWDLSNNQPSC+A+RNPKAGA
Sbjct: 376 ESKPA-FTLHAHDQAVCTISYNPLAPNFLATGSTDKMVKLWDLSNNQPSCVATRNPKAGA 434

Query: 452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493
           VFS++FSED PF+LAIGGS GKLE+WDTLS+A +S +F  YS
Sbjct: 435 VFSISFSEDRPFLLAIGGSTGKLEVWDTLSEAXVSRKFGNYS 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
TAIR|locus:2117169	461	AT4G18900 "AT4G18900" [Arabido	0.780	0.850	0.560	4e-122
TAIR|locus:2122133	433	AT4G35370 "AT4G35370" [Arabido	0.400	0.464	0.639	8.1e-106
UNIPROTKB|G4MTU3	551	MGG_04802 "Periodic tryptophan	0.750	0.684	0.420	5.1e-81
ASPGD|ASPL0000062261	535	AN0310 [Emericella nidulans (t	0.745	0.699	0.405	5e-76
DICTYBASE|DDB_G0275073	569	pwp1 "periodic tryptophan prot	0.762	0.673	0.363	2.6e-69
POMBASE|SPBC1711.16	516	SPBC1711.16 "WD repeat protein	0.717	0.697	0.367	3.1e-67
MGI|MGI:1914735	501	Pwp1 "PWP1 homolog (S. cerevis	0.721	0.722	0.352	1.6e-61
UNIPROTKB|Q13610	501	PWP1 "Periodic tryptophan prot	0.721	0.722	0.352	2.7e-61
UNIPROTKB|Q2HJ56	500	PWP1 "Periodic tryptophan prot	0.721	0.724	0.352	4.3e-61
ZFIN|ZDB-GENE-040426-1049	490	pwp1 "PWP1 homolog (S. cerevis	0.713	0.730	0.370	9e-61

TAIR|locus:2117169 AT4G18900 "AT4G18900" [Arabidopsis thaliana (taxid:3702)]

 Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
 Identities = 230/410 (56%), Positives = 291/410 (70%)

Query:    89 DDITDGLKELXXXXXXXXXXGVEIFGKGLGDLYYASNQMDPYXXXXXXXXXXXXXXMTIN 148
             D++ +GLKEL          G+EIF  G GDLYY SN+MDPY                I 
Sbjct:    67 DEVAEGLKELDMDNYDEEDDGIEIFSSGRGDLYYKSNEMDPYLKRNDDHDDDSDDDPPIL 126

Query:   149 PNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE 207
             P D VIVCA  +D + + L+VY+ E++  G PN+Y HH+ IIPA PLC AWLDCPLK  E
Sbjct:   127 PTDLVIVCAMTDDKEANRLDVYVSEDTSHGSPNMYNHHYRIIPAIPLCTAWLDCPLKGGE 186

Query:   208 KGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHT 266
             +GNF+AVGS   P IEIWDLD   ++ P V LGG ++E                    HT
Sbjct:   187 RGNFLAVGSDGTPTIEIWDLDAWFDMLPCVQLGGQNKEGNYKQGS-------------HT 233

Query:   267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL 326
              SVLGLAWNKEFRNILASASADK+VK+WDVA G C +T+EHHT +VQAVAWNH++P++LL
Sbjct:   234 RSVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEVLL 293

Query:   327 SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
             SGSFD++VV+KD R  +HSGFKW+V +DVESLAWDPH+EHSFVVSLEDGT+KGFD+R A 
Sbjct:   294 SGSFDQTVVLKDGRQPSHSGFKWSVMSDVESLAWDPHSEHSFVVSLEDGTVKGFDVRQAS 353

Query:   387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446
                 ++    SFT++ HD+A  ++SYN   PNLLATGS D+ VKLWDLSNN+PSCIA+ N
Sbjct:   354 IS--ASESNPSFTINGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLSNNEPSCIATHN 411

Query:   447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF-SKYSKP 495
             P AG +F +AFS D+PF+LA+GG  G+L++WDTLSD  +S+R+ S+  +P
Sbjct:   412 PNAGGLFFIAFSPDNPFLLAMGGVMGELKLWDTLSDTNVSSRYGSREVRP 461

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122133 AT4G35370 "AT4G35370" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 8.1e-106, Sum P(3) = 8.1e-106
 Identities = 133/208 (63%), Positives = 161/208 (77%)

Query:   265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
             HT  V+ LAWNKEFRNI+AS S DK+VK+WDVA GKC +T+EHH  KV AVAWN+++P++
Sbjct:   215 HTGPVIDLAWNKEFRNIVASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAVAWNNYTPEV 274

Query:   325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
             LLSGS DR+VV+KD R  ++SG KW+  A VE LAWDPH+EHSFVVSL+DGT+KGFD R 
Sbjct:   275 LLSGSRDRTVVLKDGRDPSNSGLKWSTEAKVEKLAWDPHSEHSFVVSLKDGTVKGFDTRA 334

Query:   385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
             +   P       SF +HAHD  V +ISYN   PNLLATGS D+ VKLWDLSNNQPS IA+
Sbjct:   335 SDLSP-------SFIIHAHDSEVSSISYNIHAPNLLATGSADESVKLWDLSNNQPSWIAT 387

Query:   445 RNPKAGAVFSVAFSEDSPFVLAIGGSKG 472
               P AG VFSV+FS D PF+LA+GGS+G
Sbjct:   388 NKPNAGEVFSVSFSADCPFLLAVGGSEG 415

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MTU3 MGG_04802 "Periodic tryptophan protein 1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 789 (282.8 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
 Identities = 165/392 (42%), Positives = 235/392 (59%)

Query:   109 GVEIFGKGLGDLYYASNQMDPYXXXXXXXXXXXXXX---MTINPNDAVIVCARNEDDVSH 165
             G+ IFG      YY +N+ DPY                 + I   D +++ A+ ED+++H
Sbjct:   113 GMGIFGNVKSLAYYENNEDDPYITLKEGKTGEDDDDREDLQILATDNLLLAAKVEDELAH 172

Query:   166 LEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL--KDREK---GNFMAVGSMEPA 220
             LEVY+ E  D  D NLYVHH I++PA PLC+ WLD  +  KD  K    NF+A+G+M+P 
Sbjct:   173 LEVYVYE--DAAD-NLYVHHDIMLPAIPLCVEWLDIAVEKKDTPKDAAANFVAIGTMDPD 229

Query:   221 IEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRN 280
             IEIWDLD ID + P+ ILG                         H D+VL LA N++ RN
Sbjct:   230 IEIWDLDTIDCMYPNAILGQGSNADEASGKKKKKKKSKKVNDEFHVDAVLALAANRKHRN 289

Query:   281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340
             +LASASADK VK+WD+   KC  + ++HTDKV +VAW+     +LLSGS+DR++V  D R
Sbjct:   290 LLASASADKTVKLWDLNTTKCAKSYKYHTDKVCSVAWHPVESTVLLSGSYDRTIVAADMR 349

Query:   341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL 400
                    +W V +DVE++ WDPH  + F VS E+G I  +D+R A SDP +TS+ +++TL
Sbjct:   350 APDAKVPRWGVESDVENVRWDPHDPNFFFVSTENGLIHYYDVRNAPSDP-ATSK-ATWTL 407

Query:   401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 460
              AHD+++ +   NP++P  + TGSTDK VKLW++  + PS I SRN   G VFS +F+ D
Sbjct:   408 QAHDESISSFDINPVIPGFMVTGSTDKTVKLWNIQESGPSMIVSRNLDVGKVFSTSFAPD 467

Query:   461 SP--FVLAIGGSKGKLEIWDTLSDAGISNRFS 490
             +   F L++ GSKG + +WDT ++  I   F+
Sbjct:   468 AEVGFRLSVAGSKGTVTVWDTSTNPAIRRAFA 499

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

ASPGD|ASPL0000062261 AN0310 [Emericella nidulans (taxid:162425)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 157/387 (40%), Positives = 226/387 (58%)

Query:   110 VEIFGKGLGDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVY 169
             + +FG      Y+  N+ DPY              + I P D +++  + ED+V+HLEVY
Sbjct:   107 ITMFGNVKSLAYHQPNEEDPYLVVPEDEEDEEREELQILPTDNLLLAGKVEDEVAHLEVY 166

Query:   170 ILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL-KDREKG----NFMAVGSMEPAIEIW 224
             + E  D  D NLYVHH I++PA PLC+ WLD P+ K  E G    NF+AVG+MEP IE+W
Sbjct:   167 VYE--DEAD-NLYVHHDIMLPAIPLCLEWLDFPVGKSGENGGATGNFVAVGTMEPDIEVW 223

Query:   225 DLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRNILAS 284
             DLDV+D + P+ ILG    +                    H DSVL LA N++ RN+LAS
Sbjct:   224 DLDVVDSMYPNAILGQGGADADTDAKKPRKKKKVKANDEFHVDSVLALAANRQHRNLLAS 283

Query:   285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344
              SAD+ VK+WD+   K   +  HHTDKV ++ W+     +LL+GS+DR++V  D R +  
Sbjct:   284 GSADRTVKLWDLNTAKSAKSYTHHTDKVCSLDWHPKESTVLLTGSYDRTIVAADMR-APD 342

Query:   345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 404
             S  +W V ADVE++ WD H  + F  + + G +  +DIR   + P  +  +  ++L AHD
Sbjct:   343 SKARWGVDADVENVRWDIHDPNYFYATTDAGMVYRYDIRNVPATPKDS--KPVWSLQAHD 400

Query:   405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-- 462
              +V +   NP +P  LATGSTDK VKLW++ N++PS + SR  + G VFS  F+ D+   
Sbjct:   401 SSVSSFDINPAIPGFLATGSTDKQVKLWNVENDKPSMVVSRKLEVGKVFSTTFAPDAEVG 460

Query:   463 FVLAIGGSKGKLEIWDTLSDAGISNRF 489
             F LA+ GSKG ++IWDT ++A +   F
Sbjct:   461 FRLAVAGSKGTVQIWDTSTNAAVRRAF 487

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

DICTYBASE|DDB_G0275073 pwp1 "periodic tryptophan protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 677 (243.4 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
 Identities = 147/404 (36%), Positives = 218/404 (53%)

Query:   109 GVEIFGKGL-GDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCA--RNEDDVSH 165
             G++   + + G ++Y     DPY              + I P D+++V A    EDD SH
Sbjct:   101 GLKFINRAMKGLMFYKDTDSDPYLTNKEEEDIEDIEDVIIRPTDSILVSAIVTGEDDYSH 160

Query:   166 LEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIW 224
             L++ + EE      NLYVHH II+ ++PL +AW+D  P+  +EKG+FMAVG+ EP+IEIW
Sbjct:   161 LDIMVYEEECD---NLYVHHDIILSSYPLALAWMDQNPINPQEKGSFMAVGTFEPSIEIW 217

Query:   225 DLDVIDEVQPHVILGGIDEEXXXX----XXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRN 280
             DLDV+D + P VILGG +E+                        H D V+ L+WN   RN
Sbjct:   218 DLDVVDNLIPTVILGGKEEDSADPMKKPSAKKRGGKHNKFKEGSHRDGVMSLSWNSHQRN 277

Query:   281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340
             +LAS S+D  VK+WD+   +C  T  HH DKV  + WN H    LL GS D+ V + D R
Sbjct:   278 VLASGSSDNTVKVWDITTQQCLNTFTHHKDKVSCLHWNSHEKTALLIGSHDKHVSILDVR 337

Query:   341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL 400
              +  S +KW+V  +VESL+W+PH    F+V  +DG +  +D     +     S Q+S   
Sbjct:   338 -APDSAYKWSVKGEVESLSWNPHNPKEFIVGTDDGRLLCYDATLGTAAAPVWSVQAS--- 393

Query:   401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL--SNNQPSCIASRNPKAGAVFSVAFS 458
                  +V   SY P      ATGS+D  VKLW+L  S+N+P+ I S+N     +F+++F 
Sbjct:   394 --QKGSVSCFSYCPGQVGFFATGSSDHTVKLWNLETSSNKPTLIESKN-LGQEIFTLSFF 450

Query:   459 EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSVI 502
             E+SPF+LA+G    +  + DT     + N F   ++P+  +  +
Sbjct:   451 ENSPFLLAVGSETQRPNVIDTKRFISVQNSFG-IARPENSKEPV 493

GO:0003674 "molecular_function" evidence=ND

GO:0006364 "rRNA processing" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

POMBASE|SPBC1711.16 SPBC1711.16 "WD repeat protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 141/384 (36%), Positives = 217/384 (56%)

Query:   112 IFGKGLGDLYYASNQMDPYXXXX-XXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVYI 170
             +F    G  Y+ + + DPY               M I P D++++ AR ED++SH+EVY+
Sbjct:   105 MFSNIRGLAYHENGEKDPYITIDPQEQDDLEREEMQILPTDSLLLAARTEDNLSHVEVYV 164

Query:   171 LEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL--KDREKGNFMAVGSMEPAIEIWDLDV 228
              E ++    NLYVHH  ++P FPLC+ WLD  +   D   GN++AVG+ +P IEIWDLD+
Sbjct:   165 YEPTE---ENLYVHHDFLLPTFPLCLEWLDYKVGTSDNAPGNYVAVGTFDPEIEIWDLDI 221

Query:   229 IDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRNILASASAD 288
             ID V P  +LG                         HTD+VL L+ N+   N+L S SAD
Sbjct:   222 IDAVYPAAVLGA-----GASQVNKKKKKSKKINDSYHTDAVLALSSNRNAHNLLVSGSAD 276

Query:   289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGF 347
               +K+WD++   C  +  +H+DKV  + W   +P +LLSGS+D++  + D R+    S F
Sbjct:   277 TTLKLWDLSTCNCVKSFTYHSDKVSCLDWYSKAPSVLLSGSYDKTAKIADLRLEEAPSSF 336

Query:   348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407
             +  V +DVE++AWD H+E++F +  ++G +   D R           +S + L AHD  +
Sbjct:   337 Q--VTSDVENVAWDQHSENNFFIGTDNGIVYYCDARNLS--------KSVWQLQAHDGPI 386

Query:   408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED--SPFVL 465
               +S NP VP+ +ATGSTD++VKLW+ S++ P  + SR+   G VF+ +F+ D  + F L
Sbjct:   387 SCLSVNPSVPSFVATGSTDRVVKLWNTSDSSPKMVVSRDLDVGRVFTCSFTTDESTAFHL 446

Query:   466 AIGGSKGKLEIWDTLSDAGISNRF 489
             A  GSKG + +WDT ++ G+   F
Sbjct:   447 AASGSKGVVRVWDTATNPGVRKAF 470

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0043234 "protein complex" evidence=NAS

MGI|MGI:1914735 Pwp1 "PWP1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 135/383 (35%), Positives = 203/383 (53%)

Query:   111 EIFGKGL-GDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVY 169
             E  G+ L G   Y SN  DPY              + I P D +IVC R E +  +LEV+
Sbjct:   108 ETIGESLLGLTVYGSNDQDPYVTLKDTEQYEHEDFL-IKPTDNLIVCGRAEQEQCNLEVH 166

Query:   170 ILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDV 228
             +  + +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD+
Sbjct:   167 VYNQEE---ESFYVHHDILLSAYPLSVEWLNFDPSPDASTGNYIAVGNMTPVIEVWDLDI 223

Query:   229 IDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRNILASASAD 288
             +D ++P   LG                         HTD+VL L+WNK  RN+LASASAD
Sbjct:   224 VDSLEPVFTLGS------KLSKKKKKKGKKSSSAEGHTDAVLDLSWNKTVRNVLASASAD 277

Query:   289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 348
               V +WD++ GK    L  HTDKVQ + ++    Q L+SGS+D+SV + D R  + +  +
Sbjct:   278 STVVLWDLSVGKSVARLTAHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRDPSQNHRQ 337

Query:   349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
             W  +  +E + W+  +   F+ S +DG +   D   A+SD      +  FTL+AH+  + 
Sbjct:   338 WRFSGQIERVTWNHFSPCHFLASTDDGFVYNLD---ARSD------KPIFTLNAHNDEIS 388

Query:   409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
              +  +  +   L T S DK VK+WD+  ++PS I SR+ K G +F  +   D PFV A G
Sbjct:   389 GLDLSSQIKGCLVTASADKFVKIWDILGDRPSLIHSRDMKMGVLFCSSCCPDLPFVYAFG 448

Query:   469 GSKGKLEIWDTLSDAGISNRFSK 491
             G K  L +WD  + + ++  F +
Sbjct:   449 GQKEGLRVWDISTVSSVNEAFGR 471

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q13610 PWP1 "Periodic tryptophan protein 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 135/383 (35%), Positives = 203/383 (53%)

Query:   111 EIFGKGL-GDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVY 169
             E  G+ L G   Y SN  DPY              + I P+D +IVC R E D  +LEV+
Sbjct:   109 ETLGESLLGLTVYGSNDQDPYVTLKDTEQYEREDFL-IKPSDNLIVCGRAEQDQCNLEVH 167

Query:   170 ILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDV 228
             +  + +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD+
Sbjct:   168 VYNQEED---SFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDI 224

Query:   229 IDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRNILASASAD 288
             +D ++P   LG                         HTD+VL L+WNK  RN+LASASAD
Sbjct:   225 VDSLEPVFTLGS------KLSKKKKKKGKKSSSAEGHTDAVLDLSWNKLIRNVLASASAD 278

Query:   289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 348
               V +WD++ GK   +L  HTDKVQ + ++    Q L+SGS+D+SV + D R    S   
Sbjct:   279 NTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRSPDESHRM 338

Query:   349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
             W  +  +E + W+  +   F+ S +DG +   D   A+SD      +  FTL+AH+  + 
Sbjct:   339 WRFSGQIERVTWNHFSPCHFLASTDDGFVYNLD---ARSD------KPIFTLNAHNDEIS 389

Query:   409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
              +  +  +   L T S DK VK+WD+  ++PS + SR+ K G +F  +   D PF+ A G
Sbjct:   390 GLDLSSQIKGCLVTASADKYVKIWDILGDRPSLVHSRDMKMGVLFCSSCCPDLPFIYAFG 449

Query:   469 GSKGKLEIWDTLSDAGISNRFSK 491
             G K  L +WD  + + ++  F +
Sbjct:   450 GQKEGLRVWDISTVSSVNEAFGR 472

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q2HJ56 PWP1 "Periodic tryptophan protein 1 homolog" [Bos taurus (taxid:9913)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 135/383 (35%), Positives = 203/383 (53%)

Query:   111 EIFGKGL-GDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVY 169
             E  G+ L G   Y SN  DPY              + I P+D +IVC R E D  +LEV+
Sbjct:   108 ETLGESLLGLTVYGSNDQDPYVTLKDTEQYEREDFL-IKPSDNLIVCGRAEQDQCNLEVH 166

Query:   170 ILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDV 228
             +  + +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD+
Sbjct:   167 VYNQEED---SFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDI 223

Query:   229 IDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRNILASASAD 288
             +D ++P   LG                         HTD+VL L+WNK  RN+LASASAD
Sbjct:   224 VDSLEPVFTLGS------KLSKKKKKKGKKNSSADGHTDAVLDLSWNKLVRNVLASASAD 277

Query:   289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 348
               V +WD++ GK   +L  HTDKVQ + ++    Q L+SGS+D+SV + D R    S   
Sbjct:   278 NTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRSPEESHRM 337

Query:   349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
             W  +  +E + W+  +   F+ S +DG +   D   A+SD      +  FTL+AH+  + 
Sbjct:   338 WRFSGQIERVTWNHFSPCHFLASTDDGFVYNLD---ARSD------KPIFTLNAHNDEIS 388

Query:   409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
              +  +  +   L T S DK VK+WD+  ++PS + SR+ K G +F  +   D PF+ A G
Sbjct:   389 GLDLSSQIKGCLVTASADKYVKIWDILGDRPSLVHSRDMKMGVLFCSSCCPDLPFIYAFG 448

Query:   469 GSKGKLEIWDTLSDAGISNRFSK 491
             G K  L +WD  + + ++  F +
Sbjct:   449 GQKEGLRVWDISTVSSVNEAFGR 471

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1049 pwp1 "PWP1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 140/378 (37%), Positives = 203/378 (53%)

Query:   114 GKGLGDL-YYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVYILE 172
             G  L  L  + +N+ DPY                I P D +I+  R E +  +LE+++  
Sbjct:   109 GDSLAGLTVFGTNEEDPYVTIKDTDQYEREDFQ-IKPTDNLILAGRAEKECCNLEIHVYN 167

Query:   173 ESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVIDE 231
               +    +LYVHH I++PA+PLC+ WL+  P  + ++GN+ AVG+M P I++WDLDV+D 
Sbjct:   168 SEED---SLYVHHDILLPAYPLCVEWLNFDPNPEEQQGNYAAVGNMTPVIDVWDLDVVDC 224

Query:   232 VQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDSVLGLAWNKEFRNILASASADKQV 291
             ++P   LG   E+                    HTD+VL L+WN+  RN+LASASAD+ V
Sbjct:   225 LEPAFSLGSKKEKKKKKKAKKAAEPIEG-----HTDAVLDLSWNRLVRNVLASASADETV 279

Query:   292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 351
              +WD+  GK   TL  HTDKVQ + ++    Q L+SGSFD+SV++ D R    S   W  
Sbjct:   280 ILWDLEKGKPAATLAKHTDKVQTLKFHPFEAQTLISGSFDKSVILYDCRSPDDSHRIWRF 339

Query:   352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS 411
             +  VE + WD  +  +F+ S EDG I   D   A+SD      +  FTL AHD  V  + 
Sbjct:   340 SGQVERVTWDHFSPCNFLASTEDGFIYCLD---ARSD------KPVFTLRAHDGEVSGMD 390

Query:   412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
              +  +   L T S DK VK+WD+  N+P+ I SR+ K G +F  +   D PFV A GG +
Sbjct:   391 LSSQIRGCLVTCSADKHVKIWDILGNKPNLIHSRDMKMGVLFCGSCCPDLPFVYAFGGQR 450

Query:   472 GKLEIWDTLSDAGISNRF 489
               L +WD    A ++  F
Sbjct:   451 EGLRVWDISDVAAVAEVF 468

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9P775	YBEG_SCHPO	No assigned EC number	0.3525	0.9063	0.8817	yes	no
Q99LL5	PWP1_MOUSE	No assigned EC number	0.3512	0.9163	0.9181	yes	no
P21304	PWP1_YEAST	No assigned EC number	0.3271	0.9243	0.8055	yes	no
Q13610	PWP1_HUMAN	No assigned EC number	0.3466	0.9223	0.9241	yes	no
Q2HJ56	PWP1_BOVIN	No assigned EC number	0.3527	0.9203	0.924	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_9650001	hypothetical protein (489 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_1070023	hypothetical protein (554 aa)				•					0.632
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•	•		•		0.618
	gw1.I.4832.1	hypothetical protein (422 aa)				•					0.612
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•					0.610
	eugene3.00640202	hypothetical protein (1181 aa)				•					0.582
	gw1.X.2964.1	hypothetical protein (516 aa)				•					0.568
	grail3.0001095301	hypothetical protein (414 aa)				•			•	•	0.559
	gw1.86.17.1	hypothetical protein (573 aa)				•			•		0.545
	estExt_fgenesh4_pm.C_280108	hypothetical protein (960 aa)				•				•	0.541
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•					0.528

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	502
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-29
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	3e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-10
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-04
smart00320	40	smart00320, WD40, WD40 repeats	9e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  124 bits (314), Expect = 3e-32
 Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 24/224 (10%)

Query: 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 323
            HT  V  +A++ +   +LA+ S D  +K+WD+  G+   TL+ HT  V+ VA +     
Sbjct: 7   GHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65

Query: 324 ILLSGSFDRSV----VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
            L SGS D+++    +     + T +G      + V S+A+ P        S  D TIK 
Sbjct: 66  -LASGSSDKTIRLWDLETGECVRTLTGHT----SYVSSVAFSPD-GRILSSSSRDKTIKV 119

Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439
           +D+ T K            TL  H   V +++++P     +A+ S D  +KLWDL     
Sbjct: 120 WDVETGK---------CLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTG-- 167

Query: 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483
            C+A+     G V SVAFS D    L    S G +++WD  +  
Sbjct: 168 KCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK 210

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  117 bits (294), Expect = 1e-29
 Identities = 80/274 (29%), Positives = 127/274 (46%), Gaps = 51/274 (18%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
           G ++A GS +  I +WDL+         + G                         HT  
Sbjct: 63  GTYLASGSSDKTIRLWDLE--TGECVRTLTG-------------------------HTSY 95

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
           V  +A++ +   IL+S+S DK +K+WDV  GKC  TL  HTD V +VA+       + S 
Sbjct: 96  VSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF-SPDGTFVASS 153

Query: 329 SFDRSVVMKDAR----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
           S D ++ + D R    ++T +G       +V S+A+ P      + S  DGTIK +D+ T
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHT----GEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST 208

Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
                     +   TL  H+  V +++++P    LLA+GS D  +++WDL   +     S
Sbjct: 209 ---------GKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Query: 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
            +    +V S+A+S D    LA G + G + IWD
Sbjct: 259 GHT--NSVTSLAWSPDGKR-LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  116 bits (293), Expect = 2e-29
 Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 71/309 (22%)

Query: 181 LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG 240
           L  H   +      C+A+          G  +A GS +  I++WDL              
Sbjct: 5   LKGHTGGV-----TCVAFSPD-------GKLLATGSGDGTIKVWDL-------------- 38

Query: 241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300
             E  +  ++ KG           HT  V  +A +      LAS S+DK +++WD+  G+
Sbjct: 39  --ETGELLRTLKG-----------HTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGE 84

Query: 301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR-------ISTHSGFKWAVAA 353
           C  TL  HT  V +VA+     +IL S S D+++ + D         +  H+        
Sbjct: 85  CVRTLTGHTSYVSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD------- 136

Query: 354 DVESLAWDPHAEHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412
            V S+A+ P    +FV  S +DGTIK +D+RT K            TL  H   V ++++
Sbjct: 137 WVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKC------VA---TLTGHTGEVNSVAF 185

Query: 413 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 472
           +P     L + S+D  +KLWDLS     C+ +       V SVAFS D   + + G   G
Sbjct: 186 SP-DGEKLLSSSSDGTIKLWDLST--GKCLGTLRGHENGVNSVAFSPDGYLLAS-GSEDG 241

Query: 473 KLEIWDTLS 481
            + +WD  +
Sbjct: 242 TIRVWDLRT 250

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  109 bits (273), Expect = 8e-26
 Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 10/261 (3%)

Query: 222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 281
            +  L +       ++L     +   K         +      H++SV  LA++ + + +
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
            + +S D  +K+WD+  GK   TL  HTD V ++A++     ++ SGS D ++ + D   
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 401
                   +  +D    ++ P           DGTI+ +D+R        +S     TL 
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSPD-GSLLASGSSDGTIRLWDLR--------SSSSLLRTLS 281

Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 461
            H  +V +++++P    LLA+GS+D  V+LWDL   +     +     G V S++FS D 
Sbjct: 282 GHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340

Query: 462 PFVLAIGGSKGKLEIWDTLSD 482
             +++ G   G + +WD  + 
Sbjct: 341 SLLVSGGSDDGTIRLWDLRTG 361

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 84.8 bits (208), Expect = 1e-17
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 16/229 (6%)

Query: 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSP 322
            HTD V  LA++ +   ++AS S+D  +++WD++ GK    TL  H+D    V+      
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SVVSSFSPDG 253

Query: 323 QILLSGSFDRSVVMKDARISTHSGFKWAVAAD-VESLAWDPHAEHSFVVSLEDGTIKGFD 381
            +L SGS D ++ + D R S+      +  +  V S+A+ P  +        DGT++ +D
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWD 312

Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441
           + T K         SS TL  H+  V ++S++P    L++ GS D  ++LWDL   +P  
Sbjct: 313 LETGKL-------LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL- 364

Query: 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490
                     V SV+FS D   V++ G + G + +WD  + + + N   
Sbjct: 365 --KTLEGHSNVLSVSFSPDG-RVVSSGSTDGTVRLWDLSTGSLLRNLDG 410

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 24/257 (9%)

Query: 243 EEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 302
             + K K  K  +        S            E   +L +  +D  V + D++    +
Sbjct: 8   SSENKSKLLKKSELGPSLNSLSLLSLGSS-----ESGILLLALLSDSLVSLPDLS----S 58

Query: 303 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAW 360
           L L  H D + ++A++    ++LLSGS D ++ + D           +    + V  LA 
Sbjct: 59  LLLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 361 DPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418
                +S +++    DGT+K +D+        ST  +   TL  H ++V +++++P    
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDL--------STPGKLIRTLEGHSESVTSLAFSPDGKL 169

Query: 419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           L +  S D  +KLWDL       +++       V S+AFS D   ++A G S G + +WD
Sbjct: 170 LASGSSLDGTIKLWDLR--TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 479 TLSDAGISNRFSKYSKP 495
             +   + +  S +S  
Sbjct: 228 LSTGKLLRSTLSGHSDS 244

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 61.9 bits (150), Expect = 3e-10
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 25/229 (10%)

Query: 258 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT--------LEHHT 309
           IK K   HT S+L L +N  F  ILAS S D  +++W++     ++         L+ H 
Sbjct: 68  IKLK--GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125

Query: 310 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV 369
            K+  + WN  +  I+ S  FD  V + D   +    F+  +   + SL W+        
Sbjct: 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-NEKRAFQINMPKKLSSLKWNIKG----- 179

Query: 370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN---LLATG-ST 425
            +L  GT  G  +     DP      SSF +H   K    I  + L  +   +L+TG S 
Sbjct: 180 -NLLSGTCVGKHMHII--DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK 236

Query: 426 DKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 472
           + M  +KLWDL N   + +      A A     + E +  +  IG   G
Sbjct: 237 NNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285

Length = 568

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 60.5 bits (145), Expect = 9e-10
 Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 41/240 (17%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
           G+ +A GS +  I +WDL           L G                        H+ S
Sbjct: 253 GSLLASGSSDGTIRLWDLR--SSSSLLRTLSG------------------------HSSS 286

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILL 326
           VL +A++ +   +LAS S+D  V++WD+  GK    LTL+ H   V +++++     ++ 
Sbjct: 287 VLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345

Query: 327 SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
            GS D ++ + D R            ++V S+++ P        S  DGT++ +D+ T  
Sbjct: 346 GGSDDGTIRLWDLRTGKPL-KTLEGHSNVLSVSFSPDGRVVSSGS-TDGTVRLWDLSTGS 403

Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446
                        L  H   V ++ ++P     LA+GS+D  ++LWDL  +  S   S +
Sbjct: 404 LLR---------NLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSFSPD 453

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 55.9 bits (134), Expect = 4e-08
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 13/166 (7%)

Query: 271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF 330
           G+ WN   ++ +AS++ +  V++WDVA  +    ++ H  +V ++ ++   P +L SGS 
Sbjct: 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD 596

Query: 331 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 390
           D SV +         G      A++  + +   +  S      D  +  +D+R  K    
Sbjct: 597 DGSVKLWSINQGVSIG-TIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--- 652

Query: 391 STSQQSSFTLHAHDKAVCTISYNPLV-PNLLATGSTDKMVKLWDLS 435
                   T+  H K   T+SY   V  + L + STD  +KLWDLS
Sbjct: 653 -----PLCTMIGHSK---TVSYVRFVDSSTLVSSSTDNTLKLWDLS 690

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
           +   TL  H   V +++++P   NLLA+GS D  V++WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           HT  V  ++++    N+LASA AD  V +WDV  GK    ++ H+D++ ++ WN     +
Sbjct: 124 HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SL 182

Query: 325 LLSGSFDRSVVMKDARIST 343
           L + S D+ + + D R  T
Sbjct: 183 LCTTSKDKKLNIIDPRDGT 201

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWD 295
           HT  V  +A++ +  N+LAS S D  V++WD
Sbjct: 10  HTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 393 SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
           S +   TL  H   V +++++P     LA+GS D  +KLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWD 295
           HT  V  +A++ +    LAS S D  +K+WD
Sbjct: 11  HTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT----LHAHDKAVCT 409
            +  +A++P        + EDGTI G+ I      P+    Q+       L  H K V  
Sbjct: 77  PIIDVAFNPFDPQKLFTASEDGTIMGWGI------PEEGLTQNISDPIVHLQGHTKKVGI 130

Query: 410 ISYNPLVPNLLATGSTDKMVKLWDL 434
           +S++P   N+LA+   D +V +WD+
Sbjct: 131 VSFHPSAMNVLASAGADMVVNVWDV 155

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 334
           G+   TL+ HT  V +VA++    + L SGS D ++
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTI 36

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 334
           GK   TL+ HT  V +VA++     +L SGS D +V
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDG-NLLASGSDDGTV 35

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	502
KOG0270	463	consensus WD40 repeat-containing protein [Function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
PTZ00421	493	coronin; Provisional	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
PTZ00421	493	coronin; Provisional	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG1188	376	consensus WD40 repeat protein [General function pr	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG0639	705	consensus Transducin-like enhancer of split protei	99.86
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG2096	420	consensus WD40 repeat protein [General function pr	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.82
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.82
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.8
KOG1310	758	consensus WD40 repeat protein [General function pr	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG0649	325	consensus WD40 repeat protein [General function pr	99.78
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.77
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.76
KOG1963	792	consensus WD40 repeat protein [General function pr	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
KOG1334	559	consensus WD40 repeat protein [General function pr	99.72
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.71
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.71
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.7
KOG2139	445	consensus WD40 repeat protein [General function pr	99.69
KOG2139	445	consensus WD40 repeat protein [General function pr	99.69
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.69
KOG1310	758	consensus WD40 repeat protein [General function pr	99.68
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.68
PRK11028	330	6-phosphogluconolactonase; Provisional	99.67
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.64
KOG1963	792	consensus WD40 repeat protein [General function pr	99.63
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.62
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.62
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
PRK02889	427	tolB translocation protein TolB; Provisional	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.55
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.55
PRK04922	433	tolB translocation protein TolB; Provisional	99.54
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.53
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.53
KOG1334	559	consensus WD40 repeat protein [General function pr	99.52
KOG2321	703	consensus WD40 repeat protein [General function pr	99.52
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.52
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.47
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.47
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
PRK02889	427	tolB translocation protein TolB; Provisional	99.46
KOG4547	541	consensus WD40 repeat-containing protein [General	99.44
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.44
KOG2315	566	consensus Predicted translation initiation factor	99.43
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.41
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.4
PRK04792	448	tolB translocation protein TolB; Provisional	99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.38
PRK00178	430	tolB translocation protein TolB; Provisional	99.38
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.36
KOG4547	541	consensus WD40 repeat-containing protein [General	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.34
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.33
PRK04792	448	tolB translocation protein TolB; Provisional	99.32
PRK00178	430	tolB translocation protein TolB; Provisional	99.32
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.31
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.29
PRK01029	428	tolB translocation protein TolB; Provisional	99.28
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.27
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.27
KOG2314	698	consensus Translation initiation factor 3, subunit	99.22
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.22
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.21
KOG2315	566	consensus Predicted translation initiation factor	99.21
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.2
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.18
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.17
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.17
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.17
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.14
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.11
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.1
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.1
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.07
KOG2314	698	consensus Translation initiation factor 3, subunit	99.07
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.02
PRK04043	419	tolB translocation protein TolB; Provisional	99.02
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.99
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.99
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.99
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.98
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.97
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.97
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.96
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.94
COG4946	668	Uncharacterized protein related to the periplasmic	98.92
KOG2695	425	consensus WD40 repeat protein [General function pr	98.9
COG4946	668	Uncharacterized protein related to the periplasmic	98.89
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.88
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.87
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.84
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.84
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.83
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.83
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.82
KOG2695	425	consensus WD40 repeat protein [General function pr	98.82
PRK04043	419	tolB translocation protein TolB; Provisional	98.79
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.79
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.77
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.76
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.71
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.7
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.69
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.66
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.66
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.6
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.6
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.59
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.59
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.54
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.53
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.52
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.51
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.49
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.49
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.49
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.49
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.45
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.42
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.42
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.35
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.33
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.32
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.31
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.3
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.27
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.26
KOG3621	726	consensus WD40 repeat-containing protein [General	98.22
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.17
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.17
PRK02888	635	nitrous-oxide reductase; Validated	98.15
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.14
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.06
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.04
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.0
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.95
KOG3621	726	consensus WD40 repeat-containing protein [General	97.93
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.93
COG3391	381	Uncharacterized conserved protein [Function unknow	97.9
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.85
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.83
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.83
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.82
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.8
PRK02888	635	nitrous-oxide reductase; Validated	97.8
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.8
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.79
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.77
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.75
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.71
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.71
KOG2395	644	consensus Protein involved in vacuole import and d	97.69
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.69
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.68
COG3391	381	Uncharacterized conserved protein [Function unknow	97.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.66
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.62
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.6
KOG2444	238	consensus WD40 repeat protein [General function pr	97.59
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.57
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.54
KOG2444	238	consensus WD40 repeat protein [General function pr	97.47
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.41
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.38
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.34
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.33
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.32
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.32
KOG2395	644	consensus Protein involved in vacuole import and d	97.26
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.25
PHA02713	557	hypothetical protein; Provisional	97.2
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.06
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.04
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.01
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.98
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.96
KOG2247	615	consensus WD40 repeat-containing protein [General	96.91
PHA02713	557	hypothetical protein; Provisional	96.9
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.89
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.82
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.8
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.78
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.78
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.64
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.61
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.55
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.48
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.47
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.46
PRK13616	591	lipoprotein LpqB; Provisional	96.43
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.4
PRK13616	591	lipoprotein LpqB; Provisional	96.29
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.27
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.27
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.26
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.25
PHA03098	534	kelch-like protein; Provisional	96.21
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.19
PRK10115	686	protease 2; Provisional	96.14
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.07
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.96
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.91
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.84
PHA03098	534	kelch-like protein; Provisional	95.75
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.7
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	95.6
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.48
PHA02790	480	Kelch-like protein; Provisional	95.47
COG5167	776	VID27 Protein involved in vacuole import and degra	95.36
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.2
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.16
PRK10115	686	protease 2; Provisional	95.09
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.01
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.92
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.85
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.76
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.71
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.67
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.49
COG5167	776	VID27 Protein involved in vacuole import and degra	94.36
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.27
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.11
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.83
COG4590	733	ABC-type uncharacterized transport system, permeas	93.76
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.75
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.73
KOG2247	615	consensus WD40 repeat-containing protein [General	93.37
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.35
PF12768	281	Rax2: Cortical protein marker for cell polarity	93.33
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.3
COG5276	370	Uncharacterized conserved protein [Function unknow	93.11
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	93.11
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.99
PHA02790	480	Kelch-like protein; Provisional	92.97
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.97
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.68
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.53
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.29
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.24
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.2
PLN02153	341	epithiospecifier protein	92.14
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.0
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.68
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.51
COG5276	370	Uncharacterized conserved protein [Function unknow	91.41
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.4
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.31
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.26
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	91.26
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.92
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	90.79
PLN02153	341	epithiospecifier protein	90.64
PLN02193	470	nitrile-specifier protein	90.3
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.99
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.93
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.62
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	89.42
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.42
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.25
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.17
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.7
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	88.53
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.27
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.25
PF04931	784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	88.21
KOG3616	1636	consensus Selective LIM binding factor [Transcript	88.14
PLN02193	470	nitrile-specifier protein	87.91
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	86.7
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	86.66
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.4
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.07
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.96
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	85.94
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	85.41
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.67
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	84.62
KOG2377	657	consensus Uncharacterized conserved protein [Funct	84.42
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	84.32
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	84.25
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	84.24
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.5
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	83.39
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	83.23
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	83.11
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	82.92
KOG2727	1244	consensus Rab3 GTPase-activating protein, non-cata	82.12
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	81.28
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	81.27
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	81.07
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	81.06
COG4880	603	Secreted protein containing C-terminal beta-propel	80.98

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.2e-83  Score=581.39  Aligned_cols=458  Identities=44%  Similarity=0.778  Sum_probs=390.5

Q ss_pred             CcceeeeccCCCCccCCcccCCCCHHHHHHHHHccccccccccCCCCCchhhhhhhhhhhccchhHHHHHHHhhcCCCcc
Q 010769            1 MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAKQSDDASQAVAVANALGKTSK   80 (502)
Q Consensus         1 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (502)
                      ||||++|||||+||++|+||+| +++|++|||.      +++ +..+ +++.+   .+.++      +++.+++.++..-
T Consensus         3 ~Vsa~swvprG~ake~Pdk~~l-~~~e~~rii~------~e~-~~~~-~ee~~---~e~~~------~~~~a~~~~~~~l   64 (463)
T KOG0270|consen    3 MVSALSWVPRGVAKEFPDKIEL-DDEELKRIIQ------LEG-AIAD-DEESE---SESDD------AEESAEEQGKGML   64 (463)
T ss_pred             eeeeeeeeeccchhhCCccccC-CHHHHHHHhh------hcc-cccc-ccccc---cccch------hhhhhhhhccccc
Confidence            8999999999999999999999 9999999875      111 2222 11111   00000      0011111111111


Q ss_pred             CCCCCCCCCCccccccccCCCCCCCCCc-ccccccCcccceeccCCCCCCcccCCCC-CCccccccccccCCCceEEEEE
Q 010769           81 SKNSGTKFDDITDGLKELDMDHYDDEDD-GVEIFGKGLGDLYYASNQMDPYLKDKDD-EDSEDLEDMTINPNDAVIVCAR  158 (502)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~d~e~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~  158 (502)
                      +...+.+.+..+..|+||+|++||+|.+ .+.+|.++.++.+|.+++.|||++++++ +.+++...+.+.|++++|+||.
T Consensus        65 ~~~~d~d~~~~~~~l~e~d~d~ydee~~g~~~~f~s~~g~~~y~sne~DPYvt~~d~e~deee~de~~V~psDnlIl~ar  144 (463)
T KOG0270|consen   65 DSSGDVDDDLKEYELKEYDMDEYDEEADGEIELFSSLLGIAVYPSNEKDPYVTIPDDEDDEEEKDEEQVKPSDNLILCAR  144 (463)
T ss_pred             ccccccCccchhhhhhhhccccchhcccccccccccccCceeccCCCCCCccccCCcccchhhcccceeccCCcEEEEee
Confidence            1112234445566899999999999864 5889999999999999999999999764 4556689999999999999999


Q ss_pred             ecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeee
Q 010769          159 NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL  238 (502)
Q Consensus       159 ~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l  238 (502)
                      .++++++|+||+|+....   ++|+||+.++|+||+|++|+++.......|+|+|+|++++.|.|||++..+.+.|..+|
T Consensus       145 ~eddvs~LEvYVyn~~e~---nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~L  221 (463)
T KOG0270|consen  145 NEDDVSYLEVYVYNEEEE---NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTL  221 (463)
T ss_pred             ccCCceEEEEEEEcCCCc---ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceee
Confidence            999999999999999987   99999999999999999999995555556999999999999999999999999999999


Q ss_pred             CCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEc
Q 010769          239 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN  318 (502)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~  318 (502)
                      |.....++      ++..+......+|+++|.+|+|+...+++|||||.|.+|++||+.++++..++..|..+|+++.|+
T Consensus       222 Gs~~sk~~------~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh  295 (463)
T KOG0270|consen  222 GSKASKKK------KKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWH  295 (463)
T ss_pred             chhhhhhh------hhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEec
Confidence            96544222      222224445668999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE
Q 010769          319 HHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF  398 (502)
Q Consensus       319 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  398 (502)
                      |..+.+|++|+.|++|.+.|+|........|...+.|..++|+|+.++.|++++.||+|+-+|+|+.        .++++
T Consensus       296 ~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--------~~~vw  367 (463)
T KOG0270|consen  296 PYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--------GKPVW  367 (463)
T ss_pred             CCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC--------CCcee
Confidence            9999999999999999999999888888899999999999999999999999999999999999998        68999


Q ss_pred             EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      ++.+|..+|++|++++..+++|+|++.|+.|++|++....+..+.......+...|+++.|+-.++||.||..+.++|||
T Consensus       368 t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd  447 (463)
T KOG0270|consen  368 TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD  447 (463)
T ss_pred             EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEee
Confidence            99999999999999999999999999999999999998887777777666778999999999999999999999999999


Q ss_pred             CCCCccccccccCCC
Q 010769          479 TLSDAGISNRFSKYS  493 (502)
Q Consensus       479 ~~~~~~~~~~~~~~~  493 (502)
                      +.++..+++.|+.+.
T Consensus       448 ~~~~~~V~kaF~~~~  462 (463)
T KOG0270|consen  448 IFTNSPVRKAFGSRL  462 (463)
T ss_pred             cccChhHHHhhcccc
Confidence            999999999998764

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-46  Score=335.08  Aligned_cols=301  Identities=26%  Similarity=0.384  Sum_probs=263.3

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|.+.|-+++|+|++..||+|+.+.   ++++|..+.... ......|..-+     +|++|       +|||+.||+|
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~---TvR~WD~~TeTp-~~t~KgH~~WV-----lcvaw-------sPDgk~iASG  175 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLVTGSGDT---TVRLWDLDTETP-LFTCKGHKNWV-----LCVAW-------SPDGKKIASG  175 (480)
T ss_pred             CCCCCcEEEEEecCCCceEEecCCCc---eEEeeccCCCCc-ceeecCCccEE-----EEEEE-------CCCcchhhcc
Confidence            56999999999999999999999875   778898887764 11223444444     79999       8999999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC----CcEEEEEecCCcE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF----RNILASASADKQV  291 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~~l~sgs~Dg~v  291 (502)
                      +.+|+|++||..+++...                          ..+.+|...|++|+|.|-+    ..+||++|.||+|
T Consensus       176 ~~dg~I~lwdpktg~~~g--------------------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v  229 (480)
T KOG0271|consen  176 SKDGSIRLWDPKTGQQIG--------------------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV  229 (480)
T ss_pred             ccCCeEEEecCCCCCccc--------------------------ccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence            999999999987654432                          3566999999999998742    3489999999999


Q ss_pred             EEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeC----------
Q 010769          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD----------  361 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~----------  361 (502)
                      +|||+..++++..+.+|+.+|+|++|--+|  ++++|+.|++|++|+...+.....+.+|...|+.++.+          
T Consensus       230 rIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf  307 (480)
T KOG0271|consen  230 RIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF  307 (480)
T ss_pred             EEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence            999999999999999999999999998776  99999999999999999988888888999999988876          


Q ss_pred             -CCCC------------------------CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          362 -PHAE------------------------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       362 -p~~~------------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                       |.+.                        ..+++|+.|.++.+|+-...        .+++..+.+|..-|+.+.|+|++
T Consensus       308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~--------kkpi~rmtgHq~lVn~V~fSPd~  379 (480)
T KOG0271|consen  308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS--------KKPITRMTGHQALVNHVSFSPDG  379 (480)
T ss_pred             ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc--------ccchhhhhchhhheeeEEECCCc
Confidence             2222                        25999999999999998876        47899999999999999999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          417 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                       +++|++|.|++|++|+.++++  .+.++.+|.++|+.++|+.|.+ ||++|+.|.+++||++++.+....+.+|.
T Consensus       380 -r~IASaSFDkSVkLW~g~tGk--~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~DLpGh~  451 (480)
T KOG0271|consen  380 -RYIASASFDKSVKLWDGRTGK--FLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQDLPGHA  451 (480)
T ss_pred             -cEEEEeecccceeeeeCCCcc--hhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecccCCCCC
Confidence             999999999999999999998  6888999999999999999999 79999999999999999998887776654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.7e-43  Score=318.07  Aligned_cols=286  Identities=20%  Similarity=0.297  Sum_probs=253.8

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      ..+..|..+.|+++++.||+|+.+|   .++||..... .....|+.|...+     .++.|.+..     ++..||+|+
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG---~~kvW~~~~~-~~~~~l~gH~~~v-----~~~~fhP~~-----~~~~lat~s  238 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSG---LVKVWSVPQC-NLLQTLRGHTSRV-----GAAVFHPVD-----SDLNLATAS  238 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCC---ceeEeecCCc-ceeEEEeccccce-----eeEEEccCC-----Cccceeeec
Confidence            3456899999999999999999998   5688877665 3344566666544     577774220     377899999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .||++++|+++..                           .+...+.+|...|..++|+|+ +.+|+|+|.|.+-++||+
T Consensus       239 ~Dgtvklw~~~~e---------------------------~~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~  290 (459)
T KOG0272|consen  239 ADGTVKLWKLSQE---------------------------TPLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDL  290 (459)
T ss_pred             cCCceeeeccCCC---------------------------cchhhhhcchhhheeeeecCC-Cceeeecccccchhhccc
Confidence            9999999999753                           333356689999999999999 569999999999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      .++..+....+|+..|.+++|+++| .+++||+.|..-+|||+|+++++..+.+|..+|..|.|+|+| +.+++|+.|++
T Consensus       291 ~tk~ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt  368 (459)
T KOG0272|consen  291 ETKSELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNT  368 (459)
T ss_pred             ccchhhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc-eEEeecCCCCc
Confidence            9999988889999999999999999 999999999999999999999999888999999999999976 58999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEE
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      ++|||+|..         ..+..+.+|..-|+.+.|+|..+.+|+|++.|++++||...+..  ++.++.+|.+.|.++.
T Consensus       369 ~kVWDLR~r---------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~--~~ksLaGHe~kV~s~D  437 (459)
T KOG0272|consen  369 CKVWDLRMR---------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS--PLKSLAGHEGKVISLD  437 (459)
T ss_pred             EEEeeeccc---------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc--cchhhcCCccceEEEE
Confidence            999999987         67999999999999999999666999999999999999999887  6889999999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEE
Q 010769          457 FSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       457 ~spd~~~llasg~~dg~i~vwd  478 (502)
                      .+|++.+ +++++.|.++++|.
T Consensus       438 is~d~~~-i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  438 ISPDSQA-IATSSFDRTIKLWR  458 (459)
T ss_pred             eccCCce-EEEeccCceeeecc
Confidence            9999995 99999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-41  Score=305.31  Aligned_cols=290  Identities=23%  Similarity=0.334  Sum_probs=249.7

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|+|+.||+|+.++   .+.+|.-..+...-..|..|...+     .+++|-+...  .|..++||++
T Consensus       154 KgH~~WVlcvawsPDgk~iASG~~dg---~I~lwdpktg~~~g~~l~gH~K~I-----t~Lawep~hl--~p~~r~las~  223 (480)
T KOG0271|consen  154 KGHKNWVLCVAWSPDGKKIASGSKDG---SIRLWDPKTGQQIGRALRGHKKWI-----TALAWEPLHL--VPPCRRLASS  223 (480)
T ss_pred             cCCccEEEEEEECCCcchhhccccCC---eEEEecCCCCCcccccccCcccce-----eEEeeccccc--CCCccceecc
Confidence            56999999999999999999999998   344444334443334555666544     6899976644  5778899999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.||.|+|||+..+                           .....+.+|+.+|+|+.|--+  .+|+|||.|++|++|+
T Consensus       224 skDg~vrIWd~~~~---------------------------~~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~  274 (480)
T KOG0271|consen  224 SKDGSVRIWDTKLG---------------------------TCVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWR  274 (480)
T ss_pred             cCCCCEEEEEccCc---------------------------eEEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEE
Confidence            99999999999753                           334456799999999999755  4999999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEc-----------CCC------------------------CcEEEEEECCCcEEEEeCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWN-----------HHS------------------------PQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~-----------~~~------------------------~~~l~s~~~dg~i~vwd~~  340 (502)
                      ...|++.+.+++|...|+.|+.+           |.+                        +..|++|+.|.++.+|+..
T Consensus       275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~  354 (480)
T KOG0271|consen  275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF  354 (480)
T ss_pred             ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence            99999999999999999999887           222                        2359999999999999986


Q ss_pred             CCC-CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCE
Q 010769          341 IST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       341 ~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                      ..+ ++....+|..-|+.+.|+|++. ++++++.|..|++|+.+++         +.+.++.+|-.+|..++|+.+. ++
T Consensus       355 ~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYqvawsaDs-RL  423 (480)
T KOG0271|consen  355 KSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQVAWSADS-RL  423 (480)
T ss_pred             ccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCc---------chhhhhhhccceeEEEEeccCc-cE
Confidence            554 5556778999999999999876 8999999999999999998         8889999999999999999997 99


Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      |++||.|.++++|++++.+  +...+.+|...|+++.|+|||. .+++|+.|..+++|.
T Consensus       424 lVS~SkDsTLKvw~V~tkK--l~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  424 LVSGSKDSTLKVWDVRTKK--LKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEcCCCceEEEEEeeeee--ecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence            9999999999999999987  6788899999999999999999 699999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-41  Score=309.05  Aligned_cols=249  Identities=23%  Similarity=0.315  Sum_probs=231.4

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC-CCcEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILAS  284 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s  284 (502)
                      +.+++.||||+.+|.++||+....                           .....+.+|+..|.++.|+|. ....|||
T Consensus       184 S~ds~~laT~swsG~~kvW~~~~~---------------------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat  236 (459)
T KOG0272|consen  184 SRDSKHLATGSWSGLVKVWSVPQC---------------------------NLLQTLRGHTSRVGAAVFHPVDSDLNLAT  236 (459)
T ss_pred             ecCCCeEEEeecCCceeEeecCCc---------------------------ceeEEEeccccceeeEEEccCCCccceee
Confidence            789999999999999999998753                           233456799999999999998 4668999


Q ss_pred             EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~  364 (502)
                      |+.||+|++|++.+..++..+.+|...|..++|||+| ++|+|+++|.+-++||+++........+|...|.+++|+|+|
T Consensus       237 ~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG  315 (459)
T KOG0272|consen  237 ASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG  315 (459)
T ss_pred             eccCCceeeeccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecCCC
Confidence            9999999999999999999999999999999999999 999999999999999999999888889999999999999998


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      . ++++|+.|..-++||+|++         .++..+.+|..+|.+++|+|+| ..|||||.|++++|||++..+  .+..
T Consensus       316 S-L~~tGGlD~~~RvWDlRtg---------r~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~--~ly~  382 (459)
T KOG0272|consen  316 S-LAATGGLDSLGRVWDLRTG---------RCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS--ELYT  382 (459)
T ss_pred             c-eeeccCccchhheeecccC---------cEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc--ccee
Confidence            7 8999999999999999998         8899999999999999999998 999999999999999999887  5888


Q ss_pred             ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                      +.+|..-|+.+.|+|...+.|+|++.|++++||...+..+++.+.+|..+.
T Consensus       383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV  433 (459)
T KOG0272|consen  383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKV  433 (459)
T ss_pred             cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccce
Confidence            999999999999999666679999999999999999999999998886653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.6e-39  Score=282.07  Aligned_cols=292  Identities=19%  Similarity=0.325  Sum_probs=247.3

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.++.|+++.+.|++++.++     ++.+|+.-..          ....++|+...|+- ..+|+|.|+++|+|
T Consensus        52 kGH~~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~Tt----------nK~haipl~s~WVM-tCA~sPSg~~VAcG  115 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTT----------NKVHAIPLPSSWVM-TCAYSPSGNFVACG  115 (343)
T ss_pred             cccccceeeeEecCCcCeEEeeccCC-----eEEEEEcccc----------cceeEEecCceeEE-EEEECCCCCeEEec
Confidence            35889999999999999999999998     5556654332          11234456667752 35669999999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|+...||++.+.+..                     ........+.+|++-+.|+.|.++  +.|+++|.|.+..+||
T Consensus       116 GLdN~Csiy~ls~~d~~---------------------g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWD  172 (343)
T KOG0286|consen  116 GLDNKCSIYPLSTRDAE---------------------GNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWD  172 (343)
T ss_pred             CcCceeEEEeccccccc---------------------ccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEE
Confidence            99999999999753211                     112334456799999999999987  3788999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      +++++.+..|.+|.+.|.+|.++|..++.|++|+.|+..++||+|.+...+.+.+|.+.|++|+|.|+|. -|++|+.|+
T Consensus       173 ie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~  251 (343)
T KOG0286|consen  173 IETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDA  251 (343)
T ss_pred             cccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCc
Confidence            9999999999999999999999995559999999999999999999999998999999999999999876 799999999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      +.++||+|....       ..++.-..-..+|++++||..| ++|.+|..|.++.+||.-.++  .+..+.+|...|.++
T Consensus       252 tcRlyDlRaD~~-------~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e--~vg~L~GHeNRvScl  321 (343)
T KOG0286|consen  252 TCRLYDLRADQE-------LAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGE--RVGVLAGHENRVSCL  321 (343)
T ss_pred             eeEEEeecCCcE-------EeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccc--eEEEeeccCCeeEEE
Confidence            999999998731       2233333445789999999998 999999999999999998877  566778999999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEE
Q 010769          456 AFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       456 ~~spd~~~llasg~~dg~i~vwd  478 (502)
                      ..+|||. .|++|+.|.+++||.
T Consensus       322 ~~s~DG~-av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  322 GVSPDGM-AVATGSWDSTLRIWA  343 (343)
T ss_pred             EECCCCc-EEEecchhHheeecC
Confidence            9999998 699999999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.4e-37  Score=286.14  Aligned_cols=299  Identities=23%  Similarity=0.410  Sum_probs=255.8

Q ss_pred             CccccccccccCCCc-eEEEEEecCCcceeEEEEEecCCC-CC-------CceeeeeccccCCCcceeeeecCCCCCCCC
Q 010769          138 DSEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDG-GD-------PNLYVHHHIIIPAFPLCMAWLDCPLKDREK  208 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~-~~-------~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~  208 (502)
                      |+.+|.+.+|+|-.. +|++|+.+-   ..++|.+..... ..       ..-+..+..+...-.+|++|       +.+
T Consensus       177 ~~~~V~~~~WnP~~~~llasg~~~s---~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W-------n~~  246 (524)
T KOG0273|consen  177 HESEVFICAWNPLRDGLLASGSGDS---TARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW-------NND  246 (524)
T ss_pred             CCCceEEEecCchhhhhhhccCCcc---ceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe-------cCC
Confidence            888999999999988 777777553   568887765221 00       11112233334445689999       788


Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      |++||+|+.+|.+|||+.+                            ......+..|.++|.+|.|+.. +++|++++.|
T Consensus       247 G~~LatG~~~G~~riw~~~----------------------------G~l~~tl~~HkgPI~slKWnk~-G~yilS~~vD  297 (524)
T KOG0273|consen  247 GTLLATGSEDGEARIWNKD----------------------------GNLISTLGQHKGPIFSLKWNKK-GTYILSGGVD  297 (524)
T ss_pred             CCeEEEeecCcEEEEEecC----------------------------chhhhhhhccCCceEEEEEcCC-CCEEEeccCC
Confidence            9999999999999999986                            3344466689999999999999 6799999999


Q ss_pred             CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEE
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  368 (502)
                      +++.+||..++.+.+.|..|+.+-..+.|-.+.  -|++++.|+.|+|+.+....+...+.+|.+.|.++.|+|.+. +|
T Consensus       298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LL  374 (524)
T KOG0273|consen  298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LL  374 (524)
T ss_pred             ccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eE
Confidence            999999999999999999999988889997664  799999999999999998888888889999999999999876 89


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC--------CEEEEEeCCCcEEEEECCCCCee
Q 010769          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP--------NLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~--------~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      ++++.|++++||.....         .....+.+|...|..+.|+|.++        ..+++++.|++|++||+..+.  
T Consensus       375 aS~SdD~TlkiWs~~~~---------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv--  443 (524)
T KOG0273|consen  375 ASCSDDGTLKIWSMGQS---------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV--  443 (524)
T ss_pred             EEecCCCeeEeeecCCC---------cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc--
Confidence            99999999999998876         77888999999999999999763        589999999999999999988  


Q ss_pred             EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769          441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       441 ~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      ++..+..|..+|.+++|+|+|+| +|+|+.||.|.+|++.+++.++..-+
T Consensus       444 ~i~~f~kH~~pVysvafS~~g~y-lAsGs~dg~V~iws~~~~~l~~s~~~  492 (524)
T KOG0273|consen  444 PIHTLMKHQEPVYSVAFSPNGRY-LASGSLDGCVHIWSTKTGKLVKSYQG  492 (524)
T ss_pred             eeEeeccCCCceEEEEecCCCcE-EEecCCCCeeEeccccchheeEeecC
Confidence            67889899999999999999996 99999999999999999998776543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.3e-39  Score=288.87  Aligned_cols=285  Identities=22%  Similarity=0.389  Sum_probs=242.6

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d  218 (502)
                      .-.|..+.|.|+|+.|++|+..|.+   .+|.-..-. .+..++ -|+.++    .++.|       +++|.++++|..+
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEF---tLWNg~~fn-FEtilQ-aHDs~V----r~m~w-------s~~g~wmiSgD~g  159 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEF---TLWNGTSFN-FETILQ-AHDSPV----RTMKW-------SHNGTWMISGDKG  159 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccE---EEecCceee-HHHHhh-hhcccc----eeEEE-------ccCCCEEEEcCCC
Confidence            4578999999999999999999854   555431110 011233 344333    68888       7899999999999


Q ss_pred             CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~  298 (502)
                      |.|++|+.+-.                           ........|..+|++++|+|+ ...+++||.||+|+|||...
T Consensus       160 G~iKyWqpnmn---------------------------nVk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~  211 (464)
T KOG0284|consen  160 GMIKYWQPNMN---------------------------NVKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRM  211 (464)
T ss_pred             ceEEecccchh---------------------------hhHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccC
Confidence            99999998631                           111122345699999999998 66999999999999999999


Q ss_pred             CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEE
Q 010769          299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  378 (502)
                      .+....+.+|.-.|.+++|||.. .++++|+.|..|++||.+++.++.....|...|..+.|+|++ ++|++++.|..++
T Consensus       212 ~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~k  289 (464)
T KOG0284|consen  212 PKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCK  289 (464)
T ss_pred             CchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEE
Confidence            99888899999999999999998 899999999999999999999999899999999999999988 6999999999999


Q ss_pred             EEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc
Q 010769          379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      +||+|+.         +-++.+.+|...|+++.|+|-.+.+|++|+.||.|..|.+....+. ...-.+|.+.|++++|+
T Consensus       290 v~DiR~m---------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-~~i~~AHd~~iwsl~~h  359 (464)
T KOG0284|consen  290 VFDIRTM---------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-GEIPPAHDGEIWSLAYH  359 (464)
T ss_pred             EEehhHh---------HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc-cCCCcccccceeeeecc
Confidence            9999975         7788999999999999999998899999999999999999865543 33346789999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECC
Q 010769          459 EDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       459 pd~~~llasg~~dg~i~vwd~~  480 (502)
                      |=|. +|++|+.|.++++|.-.
T Consensus       360 PlGh-il~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  360 PLGH-ILATGSNDRTVRFWTRN  380 (464)
T ss_pred             ccce-eEeecCCCcceeeeccC
Confidence            9997 89999999999999753

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.6e-38  Score=305.36  Aligned_cols=264  Identities=22%  Similarity=0.423  Sum_probs=223.3

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCC--CCCceeeeCCcchh--hhhhccccCCccccccccCCcccceeeEEecCCCCcE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVID--EVQPHVILGGIDEE--KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~--~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      ++++.+||.|..|..|++|.+....  .+....-+......  .................+.||.++|..++|+|+ +++
T Consensus       387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd-~rf  465 (707)
T KOG0263|consen  387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD-RRF  465 (707)
T ss_pred             cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc-ccc
Confidence            8899999999999999999997421  11110000000000  000001112223334457899999999999999 779


Q ss_pred             EEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeC
Q 010769          282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  361 (502)
Q Consensus       282 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~  361 (502)
                      |++||.|++||+|.+.+..++..+++|..+|+.+.|+|.| .+|+|++.|++.++|......+.+.+.+|-+.|.|+.|+
T Consensus       466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FH  544 (707)
T KOG0263|consen  466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFH  544 (707)
T ss_pred             eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcccccccceEEEC
Confidence            9999999999999999999999999999999999999999 999999999999999999888888888999999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      |+. +++++|+.|.+|++||+.++         ..++.+.+|.++|++++|+|+| ++|++|+.||.|++||+.+++  .
T Consensus       545 PNs-~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~--~  611 (707)
T KOG0263|consen  545 PNS-NYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGS--L  611 (707)
T ss_pred             Ccc-cccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCc--c
Confidence            975 48999999999999999998         7789999999999999999998 999999999999999999988  5


Q ss_pred             EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      +..+.+|.+.|.++.|+.+|. +||+||.|.+|++||+..-...
T Consensus       612 v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  612 VKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             hhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhccc
Confidence            778888999999999999999 7999999999999999764443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-36  Score=257.92  Aligned_cols=291  Identities=17%  Similarity=0.246  Sum_probs=236.0

Q ss_pred             ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCC
Q 010769          152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDE  231 (502)
Q Consensus       152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~  231 (502)
                      -+|++++.+.   ++++|....+..  ..-..|.+..+    ..++-       .|++++||+|+. ..||+||+++...
T Consensus        11 viLvsA~YDh---TIRfWqa~tG~C--~rTiqh~dsqV----NrLei-------Tpdk~~LAaa~~-qhvRlyD~~S~np   73 (311)
T KOG0315|consen   11 VILVSAGYDH---TIRFWQALTGIC--SRTIQHPDSQV----NRLEI-------TPDKKDLAAAGN-QHVRLYDLNSNNP   73 (311)
T ss_pred             eEEEeccCcc---eeeeeehhcCeE--EEEEecCccce----eeEEE-------cCCcchhhhccC-CeeEEEEccCCCC
Confidence            3677777775   556665554432  11123333222    22222       789999999975 7999999986432


Q ss_pred             CCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCC
Q 010769          232 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK  311 (502)
Q Consensus       232 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~  311 (502)
                                               .+...+.+|+..|+.+.|..+ +..+++||.||+++|||++...+.+.++ |..+
T Consensus        74 -------------------------~Pv~t~e~h~kNVtaVgF~~d-grWMyTgseDgt~kIWdlR~~~~qR~~~-~~sp  126 (311)
T KOG0315|consen   74 -------------------------NPVATFEGHTKNVTAVGFQCD-GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSP  126 (311)
T ss_pred             -------------------------CceeEEeccCCceEEEEEeec-CeEEEecCCCceEEEEeccCcccchhcc-CCCC
Confidence                                     244466789999999999999 5699999999999999999988877776 7799


Q ss_pred             eEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 010769          312 VQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD  390 (502)
Q Consensus       312 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  390 (502)
                      |+++..+|+. .-|++|..+|.|++||++...+..... .....|.++...|+|. .++++...|+.++|++-+......
T Consensus       127 Vn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~  204 (311)
T KOG0315|consen  127 VNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASE  204 (311)
T ss_pred             cceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCcccc
Confidence            9999999998 789999999999999999876654333 2346799999999887 788899999999999987432221


Q ss_pred             CCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC
Q 010769          391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       391 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~  470 (502)
                         ..|+..+++|.+.+..+.+||++ ++|||+|.|.+++||+..+. ......+.+|...++.++||.+|.| |++|+.
T Consensus       205 ---l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~Y-lvTass  278 (311)
T KOG0315|consen  205 ---LEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEY-LVTASS  278 (311)
T ss_pred             ---ceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccE-EEecCC
Confidence               47788899999999999999998 99999999999999999988 4567788899999999999999997 889999


Q ss_pred             CCcEEEEECCCCccccccccCCCC
Q 010769          471 KGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       471 dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      |+.+++|++..++.++..-+|+..
T Consensus       279 d~~~rlW~~~~~k~v~qy~gh~K~  302 (311)
T KOG0315|consen  279 DHTARLWDLSAGKEVRQYQGHHKA  302 (311)
T ss_pred             CCceeecccccCceeeecCCcccc
Confidence            999999999999999888877654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.4e-35  Score=256.11  Aligned_cols=254  Identities=22%  Similarity=0.340  Sum_probs=228.2

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      +|+.|       ++++++|++++.||.+.|||.-+.+.+..+                           .-....|..++
T Consensus        59 ~~~~w-------s~Dsr~ivSaSqDGklIvWDs~TtnK~hai---------------------------pl~s~WVMtCA  104 (343)
T KOG0286|consen   59 YAMDW-------STDSRRIVSASQDGKLIVWDSFTTNKVHAI---------------------------PLPSSWVMTCA  104 (343)
T ss_pred             eeeEe-------cCCcCeEEeeccCCeEEEEEcccccceeEE---------------------------ecCceeEEEEE
Confidence            68888       799999999999999999998764433322                           23457899999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCC------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAG------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  347 (502)
                      |+|. ++++|+|+-|+...||++.+.      +..+.+.+|++.+.|+.|-+++  .|+|++.|.++.+||+.+++....
T Consensus       105 ~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~  181 (343)
T KOG0286|consen  105 YSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQV  181 (343)
T ss_pred             ECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEE
Confidence            9999 679999999999999999865      4567789999999999999865  799999999999999999999888


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      +.+|.+.|.++.++|...+.|++|+.|+..++||+|.+         .+++++.+|.+.|++++|.|+| .-++||+.|+
T Consensus       182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---------~c~qtF~ghesDINsv~ffP~G-~afatGSDD~  251 (343)
T KOG0286|consen  182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---------QCVQTFEGHESDINSVRFFPSG-DAFATGSDDA  251 (343)
T ss_pred             ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---------ceeEeecccccccceEEEccCC-CeeeecCCCc
Confidence            88999999999999966779999999999999999997         8899999999999999999998 9999999999


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                      +.++||++..+...++.......+|++++||..|+ +|.+|..|.++.+||...++.+..+.+|.+..
T Consensus       252 tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRv  318 (343)
T KOG0286|consen  252 TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENRV  318 (343)
T ss_pred             eeEEEeecCCcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCee
Confidence            99999999998777777777788999999999999 57788999999999999999999888887643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-35  Score=251.23  Aligned_cols=288  Identities=20%  Similarity=0.341  Sum_probs=222.4

Q ss_pred             CCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCC----CCceeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010769          136 DEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGG----DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~  210 (502)
                      +.|.++|..+++.+.+ ..|+.++.+.   .+-+|.+......    ...+.+|...+     ..+.       .+++|+
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk---~ii~W~L~~dd~~~G~~~r~~~GHsH~v-----~dv~-------~s~dg~   76 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDK---TIIVWKLTSDDIKYGVPVRRLTGHSHFV-----SDVV-------LSSDGN   76 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccce---EEEEEEeccCccccCceeeeeeccceEe-----cceE-------EccCCc
Confidence            3588999999999985 5666777665   5666766554321    11233433222     1111       178999


Q ss_pred             EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~  290 (502)
                      +.++++.|+++|+||+.++                           .....+.+|+..|++++|+++ ...++|||.|.+
T Consensus        77 ~alS~swD~~lrlWDl~~g---------------------------~~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkT  128 (315)
T KOG0279|consen   77 FALSASWDGTLRLWDLATG---------------------------ESTRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKT  128 (315)
T ss_pred             eEEeccccceEEEEEecCC---------------------------cEEEEEEecCCceEEEEecCC-CceeecCCCcce
Confidence            9999999999999999864                           233356699999999999999 458999999999


Q ss_pred             EEEEECCCCeeeEEeccC--CCCeEEEEEcCCC-CcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE
Q 010769          291 VKIWDVAAGKCNLTLEHH--TDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  367 (502)
                      |++|++.. .+..++..+  ++.|+|++|+|.. ..+|++++.|++|++||+++.+......+|.+.++.+.++|+|. +
T Consensus       129 iklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-l  206 (315)
T KOG0279|consen  129 IKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-L  206 (315)
T ss_pred             eeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC-E
Confidence            99999764 455555333  7899999999984 47899999999999999999999888889999999999999987 8


Q ss_pred             EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-
Q 010769          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-  446 (502)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-  446 (502)
                      .++|+.||.+.+||++..         +.++.+. |...|.+++|+|+.  +.+++..+..|+|||+.+.......... 
T Consensus       207 casGgkdg~~~LwdL~~~---------k~lysl~-a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~l~~d~  274 (315)
T KOG0279|consen  207 CASGGKDGEAMLWDLNEG---------KNLYSLE-AFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEELKLDG  274 (315)
T ss_pred             EecCCCCceEEEEEccCC---------ceeEecc-CCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhhccccc
Confidence            999999999999999987         5555554 78899999999964  4444445566999999987632111111 


Q ss_pred             ------CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          447 ------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       447 ------~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                            ...-...+++|+++|. .|.+|-.|+.|++|.+..
T Consensus       275 ~g~s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  275 IGPSSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             cccccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEeec
Confidence                  1122367899999999 488899999999999853

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-35  Score=263.41  Aligned_cols=287  Identities=22%  Similarity=0.401  Sum_probs=253.3

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|..+.|+|+-.++++++.+.   ++++|.+..++. ...|.+|.+.+     ..+.+       +..|++||++
T Consensus       105 ~g~r~~vt~v~~hp~~~~v~~as~d~---tikv~D~~tg~~-e~~LrGHt~sv-----~di~~-------~a~Gk~l~tc  168 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPSEALVVSASEDA---TIKVFDTETGEL-ERSLRGHTDSV-----FDISF-------DASGKYLATC  168 (406)
T ss_pred             hccccceeeeeeccCceEEEEecCCc---eEEEEEccchhh-hhhhhccccce-----eEEEE-------ecCccEEEec
Confidence            45888999999999999999998775   678887776654 45666776542     33333       6679999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|-.+.+||++..                          ......+.+|...|.++.|-|. +.+++|++.|.+|+.|+
T Consensus       169 SsDl~~~LWd~~~~--------------------------~~c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We  221 (406)
T KOG0295|consen  169 SSDLSAKLWDFDTF--------------------------FRCIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWE  221 (406)
T ss_pred             CCccchhheeHHHH--------------------------HHHHHHhcCcccceeeEEEEec-CCeeeecccccceeEEe
Confidence            99988999998631                          2233345689999999999999 57999999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC------------
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH------------  363 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~------------  363 (502)
                      +.++-++.+|.+|+..|..++.+.+| .++++++.|.+|++|-+.+.++......|..+|.|++|.|.            
T Consensus       222 ~~tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~  300 (406)
T KOG0295|consen  222 CDTGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS  300 (406)
T ss_pred             cccceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC
Confidence            99999999999999999999999999 99999999999999999999888888899999999999873            


Q ss_pred             --CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769          364 --AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       364 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                        +..++++++.|++|++||+.++         .+++++.+|...|..++|+|.| ++|+++..|+++++||+++.+  |
T Consensus       301 ~~~~~~l~s~SrDktIk~wdv~tg---------~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~--c  368 (406)
T KOG0295|consen  301 TNGGQVLGSGSRDKTIKIWDVSTG---------MCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQ--C  368 (406)
T ss_pred             CCCccEEEeecccceEEEEeccCC---------eEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccce--e
Confidence              2248999999999999999997         8999999999999999999988 999999999999999999988  8


Q ss_pred             EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      ......|...|+++.|+.+.+| +++|+-|.++++|..
T Consensus       369 mk~~~ah~hfvt~lDfh~~~p~-VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  369 MKTLEAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeccCCCcceeEEEecCCCCce-EEeccccceeeeeec
Confidence            8888999999999999999996 999999999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-34  Score=277.66  Aligned_cols=291  Identities=23%  Similarity=0.387  Sum_probs=235.7

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccC-CCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIP-AFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~w~~~~~~~s~~~~~la~g~~d  218 (502)
                      ..|.+..|||.-++||+|-..+     ..+.|+-.     .+..-|...+. .....+.|       +..|.+||.|+..
T Consensus       266 ~kvtaa~fH~~t~~lvvgFssG-----~f~LyelP-----~f~lih~LSis~~~I~t~~~-------N~tGDWiA~g~~k  328 (893)
T KOG0291|consen  266 SKVTAAAFHKGTNLLVVGFSSG-----EFGLYELP-----DFNLIHSLSISDQKILTVSF-------NSTGDWIAFGCSK  328 (893)
T ss_pred             cceeeeeccCCceEEEEEecCC-----eeEEEecC-----CceEEEEeecccceeeEEEe-------cccCCEEEEcCCc
Confidence            5799999999999999999888     44444433     23333433343 33344444       5679999999876


Q ss_pred             -CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          219 -PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       219 -g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                       |.+-||+..+.                           ......++|...+++++++|+ +.++|+|+.||.|+|||..
T Consensus       329 lgQLlVweWqsE---------------------------sYVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~  380 (893)
T KOG0291|consen  329 LGQLLVWEWQSE---------------------------SYVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNTQ  380 (893)
T ss_pred             cceEEEEEeecc---------------------------ceeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEecc
Confidence             89999999752                           233345689999999999999 5699999999999999999


Q ss_pred             CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCCCCCEEEEEeCCC-
Q 010769          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDG-  375 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg-  375 (502)
                      ++-|..+|..|++.|+.++|+..+ +.+++++.||+|+.||+...+....+. +.+-...|++..|.|. ++++|+.|. 
T Consensus       381 SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F  458 (893)
T KOG0291|consen  381 SGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSF  458 (893)
T ss_pred             CceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceE
Confidence            999999999999999999999999 999999999999999998766544222 3344578899999876 677777665 


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      .|.+|+++++         +.+-.+.+|.+||.+++|+|.+ ..|+++|.|++|++||+-.... .+.++ .+...+..+
T Consensus       459 ~IfvWS~qTG---------qllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~-~vEtl-~i~sdvl~v  526 (893)
T KOG0291|consen  459 EIFVWSVQTG---------QLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSG-TVETL-EIRSDVLAV  526 (893)
T ss_pred             EEEEEEeecC---------eeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCc-eeeeE-eeccceeEE
Confidence            5999999998         7888999999999999999998 8999999999999999976531 22333 245679999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769          456 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       456 ~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      +|+|+|.. ||++..||.|.+||+..+.++..+-+
T Consensus       527 sfrPdG~e-laVaTldgqItf~d~~~~~q~~~Idg  560 (893)
T KOG0291|consen  527 SFRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDG  560 (893)
T ss_pred             EEcCCCCe-EEEEEecceEEEEEhhhceeeccccc
Confidence            99999995 99999999999999998887744433

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-35  Score=251.29  Aligned_cols=293  Identities=23%  Similarity=0.331  Sum_probs=238.2

Q ss_pred             ccccccCC-CceEEEE--EecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCC-CCEEEEecCC
Q 010769          143 EDMTINPN-DAVIVCA--RNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSME  218 (502)
Q Consensus       143 ~~~~~~p~-~~~l~~~--~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~-~~~la~g~~d  218 (502)
                      .+++|+|- .+.||+|  ..-|-.+.-++++++.....  .+..........--+.++|       +++ .+.+++++.|
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~--gi~e~~s~d~~D~LfdV~W-------se~~e~~~~~a~GD   82 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK--GIQECQSYDTEDGLFDVAW-------SENHENQVIAASGD   82 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCC--CeEEEEeeecccceeEeee-------cCCCcceEEEEecC
Confidence            46778875 3344333  22332334477777664221  2221111112222245566       554 7889999999


Q ss_pred             CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~  298 (502)
                      |+++|||+..                          ...+...++.|...|.++.|++..+..++++|.|++|++|+...
T Consensus        83 GSLrl~d~~~--------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   83 GSLRLFDLTM--------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             ceEEEeccCC--------------------------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            9999999642                          12345567789999999999998788899999999999999999


Q ss_pred             CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEE
Q 010769          299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  378 (502)
                      ++.+++|.+|...|....|+|..++++++++.|+++++||+|..........|...+.|+.|+....+++++|+.|+.|+
T Consensus       137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr  216 (311)
T KOG0277|consen  137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR  216 (311)
T ss_pred             CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence            99999999999999999999999999999999999999999988776667788889999999999999999999999999


Q ss_pred             EEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc
Q 010769          379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      +||+|+.        ..++..+.+|.-.|..+.|||....+|++++.|=+++|||...+. .++.+...|...+..+.|+
T Consensus       217 ~wDir~~--------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-s~~e~~~~HtEFv~g~Dws  287 (311)
T KOG0277|consen  217 GWDIRNL--------RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-SAIETVDHHTEFVCGLDWS  287 (311)
T ss_pred             EEehhhc--------cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch-hhhhhhhccceEEeccccc
Confidence            9999998        588999999999999999999988899999999999999998654 3566777899999999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEEC
Q 010769          459 EDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       459 pd~~~llasg~~dg~i~vwd~  479 (502)
                      +-.+..+|++|.|+.++||+.
T Consensus       288 ~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  288 LFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccCceeeecccccceeeecc
Confidence            987778999999999999984

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.6e-34  Score=256.89  Aligned_cols=283  Identities=16%  Similarity=0.274  Sum_probs=227.9

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC-CceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      .|...|.++.++|+.+++++|+.++     .-++|+...+.. ..+..|.+.+     .|+.|       |.+|.|||||
T Consensus        62 ~H~~svFavsl~P~~~l~aTGGgDD-----~AflW~~~~ge~~~eltgHKDSV-----t~~~F-------shdgtlLATG  124 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGGGDD-----LAFLWDISTGEFAGELTGHKDSV-----TCCSF-------SHDGTLLATG  124 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecCCCc-----eEEEEEccCCcceeEecCCCCce-----EEEEE-------ccCceEEEec
Confidence            4889999999999999999999887     666776665532 2333566655     57777       7899999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      .++|.|+||...++....                           .+......|.-|.|+|. ..+|+.|+.||.|.+|.
T Consensus       125 dmsG~v~v~~~stg~~~~---------------------------~~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw~  176 (399)
T KOG0296|consen  125 DMSGKVLVFKVSTGGEQW---------------------------KLDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQ  176 (399)
T ss_pred             CCCccEEEEEcccCceEE---------------------------EeecccCceEEEEeccc-ccEEEeecCCCcEEEEE
Confidence            999999999997533222                           22235577889999998 67999999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe-------------------------
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-------------------------  350 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------------------------  350 (502)
                      +.++...+.+.+|+.++++-.|.|+| +.++++..||+|++|++.++........                         
T Consensus       177 ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~  255 (399)
T KOG0296|consen  177 IPSQALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG  255 (399)
T ss_pred             CCCcceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence            99988888999999999999999998 8999999999999999987654321110                         


Q ss_pred             --------------------------ecCCeEEEEeCCCCC--CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec
Q 010769          351 --------------------------VAADVESLAWDPHAE--HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA  402 (502)
Q Consensus       351 --------------------------~~~~v~~v~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  402 (502)
                                                +...+.|+.+.|...  .++++|+-||+|.|||+...          .++....
T Consensus       256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----------~~R~~c~  325 (399)
T KOG0296|consen  256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----------TLRHICE  325 (399)
T ss_pred             cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----------hhheecc
Confidence                                      001122222222211  26888999999999999864          4455566


Q ss_pred             CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      |..+|+.+.|-+ . .+|++++.+|.|+.||.++++  ++..+.+|...|.+++++|+.+ +++++|.|++.+||++.
T Consensus       326 he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~--l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  326 HEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQ--LKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CCCceEEEEEcC-c-chheeeccCceEEeeeccccc--eEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence            999999999998 3 799999999999999999998  7889999999999999999999 69999999999999874

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-34  Score=249.21  Aligned_cols=249  Identities=24%  Similarity=0.324  Sum_probs=211.9

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      +...++++++|..|.+|++...+.                      +...+...+.||...|..+..+++ +++.+++|.
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~dd~----------------------~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~sw   83 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSDDI----------------------KYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASW   83 (315)
T ss_pred             CCceEEEcccceEEEEEEeccCcc----------------------ccCceeeeeeccceEecceEEccC-CceEEeccc
Confidence            578899999999999999975322                      234556677899999999999999 679999999


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee-cCCeEEEEeCCCC-C
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHA-E  365 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~-~  365 (502)
                      |+++++||+.+++..+.|.+|...|.+++|++++ +.+++|+.|++|++|++............ ...|.|++|+|.. .
T Consensus        84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~  162 (315)
T KOG0279|consen   84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN  162 (315)
T ss_pred             cceEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence            9999999999999999999999999999999999 89999999999999999765543322222 6789999999984 4


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~  445 (502)
                      .+++.++.|++|++||+++.         +....+.+|++.++.+++||+| .++++|+.||.+.+||++.++  .+..+
T Consensus       163 p~Ivs~s~DktvKvWnl~~~---------~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k--~lysl  230 (315)
T KOG0279|consen  163 PIIVSASWDKTVKVWNLRNC---------QLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK--NLYSL  230 (315)
T ss_pred             cEEEEccCCceEEEEccCCc---------chhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc--eeEec
Confidence            48999999999999999986         7778889999999999999999 999999999999999999998  45555


Q ss_pred             cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769          446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                       .|...|.+++|+|+..+ |+.+ ....|+|||+.++..+..+-....++
T Consensus       231 -~a~~~v~sl~fspnryw-L~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~  277 (315)
T KOG0279|consen  231 -EAFDIVNSLCFSPNRYW-LCAA-TATSIKIWDLESKAVVEELKLDGIGP  277 (315)
T ss_pred             -cCCCeEeeEEecCCcee-Eeec-cCCceEEEeccchhhhhhcccccccc
Confidence             46789999999999864 5544 44569999999999887665544443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.2e-34  Score=263.24  Aligned_cols=282  Identities=20%  Similarity=0.353  Sum_probs=239.5

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      ....|+++.|+.+|.+||+|+.+|   .++||..+...-   ..+..|..++    +.+.|       +..|+||++|+.
T Consensus       234 ~nkdVT~L~Wn~~G~~LatG~~~G---~~riw~~~G~l~---~tl~~HkgPI----~slKW-------nk~G~yilS~~v  296 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGTLLATGSEDG---EARIWNKDGNLI---STLGQHKGPI----FSLKW-------NKKGTYILSGGV  296 (524)
T ss_pred             ccCCcceEEecCCCCeEEEeecCc---EEEEEecCchhh---hhhhccCCce----EEEEE-------cCCCCEEEeccC
Confidence            456899999999999999999998   345555443322   3344454444    78999       678999999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      |+++.+||..++...+                           .+.-|..+-..+.|-.+  ..+++++.|+.|+|+.+.
T Consensus       297 D~ttilwd~~~g~~~q---------------------------~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~  347 (524)
T KOG0273|consen  297 DGTTILWDAHTGTVKQ---------------------------QFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVG  347 (524)
T ss_pred             CccEEEEeccCceEEE---------------------------eeeeccCCccceEEecC--ceEeecCCCceEEEEEec
Confidence            9999999986543332                           23347777788999876  379999999999999999


Q ss_pred             CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC--------CEEE
Q 010769          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE--------HSFV  369 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~--------~~l~  369 (502)
                      ...++.++.+|.++|.+|.|+|.+ .+|++++.|++++||.+........+..|...|..+.|+|.++        ..++
T Consensus       348 ~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~  426 (524)
T KOG0273|consen  348 EDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA  426 (524)
T ss_pred             CCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence            999999999999999999999999 9999999999999999988888777888999999999998753        3688


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC
Q 010769          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA  449 (502)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~  449 (502)
                      +++.|++|++||+..+         .+++.+..|..+|.+++|+|++ .++|+|+.||.|.+|++++++  .+....+ .
T Consensus       427 sas~dstV~lwdv~~g---------v~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~--l~~s~~~-~  493 (524)
T KOG0273|consen  427 SASFDSTVKLWDVESG---------VPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK--LVKSYQG-T  493 (524)
T ss_pred             EeecCCeEEEEEccCC---------ceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh--eeEeecC-C
Confidence            9999999999999987         8899999999999999999998 999999999999999999998  4555544 4


Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       450 ~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      +.|+.++|+.+|.+ |+++-.||.+++-|++
T Consensus       494 ~~Ifel~Wn~~G~k-l~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  494 GGIFELCWNAAGDK-LGACASDGSVCVLDLR  523 (524)
T ss_pred             CeEEEEEEcCCCCE-EEEEecCCCceEEEec
Confidence            66999999999985 7777889999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.2e-34  Score=283.07  Aligned_cols=274  Identities=22%  Similarity=0.344  Sum_probs=227.9

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCC---------C---------------------CCceeeeeccc
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG---------G---------------------DPNLYVHHHII  188 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~---------~---------------------~~~l~~~~~~~  188 (502)
                      ...++|..|+++..+||+|..+.   .+++|.+.....         .                     ...+++|...+
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS---~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDS---SVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             CCcceeEeecCCcchhhcccccc---EEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence            45799999999999999998774   678887763210         0                     01123333211


Q ss_pred             cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccc
Q 010769          189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  268 (502)
Q Consensus       189 ~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  268 (502)
                           +       ...|+|+.++|++++.|++||+|.+.+                           ......+.||..+
T Consensus       455 -----y-------g~sFsPd~rfLlScSED~svRLWsl~t---------------------------~s~~V~y~GH~~P  495 (707)
T KOG0263|consen  455 -----Y-------GCSFSPDRRFLLSCSEDSSVRLWSLDT---------------------------WSCLVIYKGHLAP  495 (707)
T ss_pred             -----e-------eeeecccccceeeccCCcceeeeeccc---------------------------ceeEEEecCCCcc
Confidence                 2       234589999999999999999999986                           3444456699999


Q ss_pred             eeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce
Q 010769          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  348 (502)
                      |+++.|+|. +.++||||.|++.++|.....++.+.|.+|-+.|.|+.|||+. .++++|+.|.+|++||+.++..++.+
T Consensus       496 VwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF  573 (707)
T KOG0263|consen  496 VWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIF  573 (707)
T ss_pred             eeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEe
Confidence            999999999 7899999999999999999999999999999999999999999 99999999999999999999999988


Q ss_pred             EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769          349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       349 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      .+|.++|++++|+|.|. ++++|+.+|.|.+||+.++         .++..+.+|++.|.++.|+.+| ..||+|+.|++
T Consensus       574 ~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~Dns  642 (707)
T KOG0263|consen  574 TGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANG---------SLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNS  642 (707)
T ss_pred             cCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCC---------cchhhhhcccCceeEEEEecCC-CEEEecCCCCe
Confidence            89999999999999765 8999999999999999987         7888999999999999999998 99999999999


Q ss_pred             EEEEECCCCCe----------------------eEEEEecCCCCCEEEEEEcCCCCcEEEEE
Q 010769          429 VKLWDLSNNQP----------------------SCIASRNPKAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       429 i~vwd~~~~~~----------------------~~~~~~~~~~~~v~~~~~spd~~~llasg  468 (502)
                      |++||+.....                      .++..+.....+|.++.|.... .+|++|
T Consensus       643 V~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN-l~L~~g  703 (707)
T KOG0263|consen  643 VRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN-LLLAVG  703 (707)
T ss_pred             EEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccc-eeEEec
Confidence            99999865321                      1344444555677778777655 244443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.9e-33  Score=245.28  Aligned_cols=248  Identities=21%  Similarity=0.346  Sum_probs=213.3

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+|.+||+|+.|..|.+|++....                          .....+.+|.++|+.+.|.++ ++.|+|+
T Consensus        56 ~P~gs~~aSgG~Dr~I~LWnv~gdc--------------------------eN~~~lkgHsgAVM~l~~~~d-~s~i~S~  108 (338)
T KOG0265|consen   56 HPDGSCFASGGSDRAIVLWNVYGDC--------------------------ENFWVLKGHSGAVMELHGMRD-GSHILSC  108 (338)
T ss_pred             CCCCCeEeecCCcceEEEEeccccc--------------------------cceeeeccccceeEeeeeccC-CCEEEEe
Confidence            7999999999999999999975311                          112234489999999999999 6699999


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  365 (502)
                      +.|.+|+.||+++|++++.+++|...|+++.-+..|..++.+++.||++++||+|+..... ......+++++.|...+.
T Consensus       109 gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~-t~~~kyqltAv~f~d~s~  187 (338)
T KOG0265|consen  109 GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK-TFENKYQLTAVGFKDTSD  187 (338)
T ss_pred             cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh-ccccceeEEEEEeccccc
Confidence            9999999999999999999999999999999888888899999999999999999877655 455567899999998766


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEE
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIA  443 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~  443 (502)
                       .+.+|+-|+.|++||+|..         ...+.+.+|..+|+.+..+|.| .++.+-+.|.++++||++...+  .++.
T Consensus       188 -qv~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~  256 (338)
T KOG0265|consen  188 -QVISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVK  256 (338)
T ss_pred             -ceeeccccCceeeeccccC---------cceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEE
Confidence             7999999999999999987         7899999999999999999998 9999999999999999987543  3455


Q ss_pred             EecCCC----CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010769          444 SRNPKA----GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       444 ~~~~~~----~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                      .+.+|.    -....++|+|++.+ +.+|+.|..+++||..+...+..+.+++-
T Consensus       257 if~g~~hnfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r~~lyklpGh~g  309 (338)
T KOG0265|consen  257 IFQGHIHNFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSRRILYKLPGHYG  309 (338)
T ss_pred             EeecchhhhhhhcceeeccCCCCc-cccccccceEEEeecccccEEEEcCCcce
Confidence            555442    23568899999996 88999999999999988887777766654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.2e-34  Score=262.27  Aligned_cols=246  Identities=20%  Similarity=0.361  Sum_probs=215.7

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ...+.|       .|+|+.|++|+..|.+.+|+...                           ......++.|..+|.++
T Consensus        99 V~~v~W-------tPeGRRLltgs~SGEFtLWNg~~---------------------------fnFEtilQaHDs~Vr~m  144 (464)
T KOG0284|consen   99 VNVVRW-------TPEGRRLLTGSQSGEFTLWNGTS---------------------------FNFETILQAHDSPVRTM  144 (464)
T ss_pred             eeeEEE-------cCCCceeEeecccccEEEecCce---------------------------eeHHHHhhhhcccceeE
Confidence            345666       79999999999999999999843                           23334566899999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      .|+++ +.+++||+.+|.|++|+.+-........+|...|++++|+|.. ..|++++.||+|+|||.+..+....+.+|.
T Consensus       145 ~ws~~-g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHg  222 (464)
T KOG0284|consen  145 KWSHN-GTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHG  222 (464)
T ss_pred             EEccC-CCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCC
Confidence            99999 6799999999999999976544333334455999999999987 899999999999999999988877788999


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      -.|.++.|+|..+ ++++++.|..|++||.+++         .++.++..|...|..+.|+|++ ++|+|+|.|..+++|
T Consensus       223 wdVksvdWHP~kg-LiasgskDnlVKlWDprSg---------~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~  291 (464)
T KOG0284|consen  223 WDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSG---------SCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVF  291 (464)
T ss_pred             CCcceeccCCccc-eeEEccCCceeEeecCCCc---------chhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEE
Confidence            9999999999755 8999999999999999998         8899999999999999999999 999999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      |+++.+  -++.+.+|...|+++.|+|-...||++||.||.|..|.+...+.+..
T Consensus       292 DiR~mk--El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~  344 (464)
T KOG0284|consen  292 DIRTMK--ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE  344 (464)
T ss_pred             ehhHhH--HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccC
Confidence            999665  57788899999999999998888999999999999999985554433

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.8e-33  Score=242.29  Aligned_cols=288  Identities=17%  Similarity=0.261  Sum_probs=239.0

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|..+|..+.|+|+|.++|+|+.+.   .+-+|...........+..|...+     +-+.|       .++++.|+++
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr---~I~LWnv~gdceN~~~lkgHsgAV-----M~l~~-------~~d~s~i~S~  108 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDR---AIVLWNVYGDCENFWVLKGHSGAV-----MELHG-------MRDGSHILSC  108 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcc---eEEEEeccccccceeeecccccee-----Eeeee-------ccCCCEEEEe
Confidence            46899999999999999999999997   344554333333122333444333     45566       6899999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|.+|+.||+.++...                           ..+++|.+.|+.+.-+.-|..++.||+.|++++|||
T Consensus       109 gtDk~v~~wD~~tG~~~---------------------------rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D  161 (338)
T KOG0265|consen  109 GTDKTVRGWDAETGKRI---------------------------RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD  161 (338)
T ss_pred             cCCceEEEEecccceee---------------------------ehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence            99999999999875443                           345689999999997766778999999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      +++..+++++. ....++++.|...+ ..+++|+-|+.|++||+|.........+|...|+.+..+|.|. ++++-+.|.
T Consensus       162 ~R~k~~~~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~  238 (338)
T KOG0265|consen  162 IRKKEAIKTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDN  238 (338)
T ss_pred             ecccchhhccc-cceeEEEEEecccc-cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC-ccccccccc
Confidence            99999988886 46789999999888 7899999999999999999998888889999999999999876 788999999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCC----CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCC
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA  451 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  451 (502)
                      ++++||+|.....     .+++..+.+|.    .....++|+|++ ..+.+|+.|..+++||.....  .++.+.+|.+.
T Consensus       239 tvrvwd~rp~~p~-----~R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~--~lyklpGh~gs  310 (338)
T KOG0265|consen  239 TVRVWDVRPFAPS-----QRCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRR--ILYKLPGHYGS  310 (338)
T ss_pred             eEEEEEecccCCC-----CceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeeccccc--EEEEcCCccee
Confidence            9999999976331     24466666553    356778999998 899999999999999998876  78899999999


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769          452 VFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       452 v~~~~~spd~~~llasg~~dg~i~vw  477 (502)
                      |.++.|+|..+ +|.+++.|.+|++=
T Consensus       311 vn~~~Fhp~e~-iils~~sdk~i~lg  335 (338)
T KOG0265|consen  311 VNEVDFHPTEP-IILSCSSDKTIYLG  335 (338)
T ss_pred             EEEeeecCCCc-EEEEeccCceeEee
Confidence            99999999999 58889999998874

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=8.1e-33  Score=248.45  Aligned_cols=292  Identities=21%  Similarity=0.322  Sum_probs=240.7

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      -.|++.|.++...  +..|++|+.++   .++||.......   ..+..|..++    ..+.|+.-    .+....|+++
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg---~~riWd~~Gk~~---~~~~Ght~~i----k~v~~v~~----n~~~~~fvsa  165 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDG---TSRIWDLKGKSI---KTIVGHTGPI----KSVAWVIK----NSSSCLFVSA  165 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCC---eeEEEecCCceE---EEEecCCcce----eeeEEEec----CCccceEEEe
Confidence            4589999999999  88999999998   557776655443   5566665555    45677632    2335589999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      ++|.++++|.++.++.+..                       ....-.||...|-+++..++ +..+++||.|.+|+||+
T Consensus       166 s~Dqtl~Lw~~~~~~~~~~-----------------------~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs  221 (423)
T KOG0313|consen  166 SMDQTLRLWKWNVGENKVK-----------------------ALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWS  221 (423)
T ss_pred             cCCceEEEEEecCchhhhh-----------------------HHhHhcccccceeEEEecCC-CCeEEeecccceeeecc
Confidence            9999999999976543321                       11122399999999999999 67999999999999999


Q ss_pred             CC-------------------------CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe
Q 010769          296 VA-------------------------AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       296 ~~-------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  350 (502)
                      ..                         ++.++.++.+|+.+|.++.|++.  ..+++++.|.+|+.||+.+++... ...
T Consensus       222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~-~~~  298 (423)
T KOG0313|consen  222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS-TLT  298 (423)
T ss_pred             cCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee-eee
Confidence            32                         22456778999999999999994  589999999999999999988765 455


Q ss_pred             ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      .+..+.|+..+|.. .++++|+.|..|++||.|++..      ....+++.+|...|.++.|+|....+|++|+.|++++
T Consensus       299 ~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~g------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k  371 (423)
T KOG0313|consen  299 TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDG------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK  371 (423)
T ss_pred             cCcceeEeeccccc-ceeeecCCCCceeecCCCCCCC------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence            67789999999965 4899999999999999998743      4567889999999999999999989999999999999


Q ss_pred             EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      +||+++.+. .++.+.+|...|.++.|...+  ++++||.|.+|+|+.-.
T Consensus       372 lWDvRS~k~-plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  372 LWDVRSTKA-PLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEEeccCCC-cceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence            999998762 578889999999999998765  59999999999998754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.1e-32  Score=290.02  Aligned_cols=295  Identities=18%  Similarity=0.224  Sum_probs=228.5

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--C---CCceeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--G---DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~  211 (502)
                      .|...|.+++|+|++++||+|+.++   .++||.......  .   .+.....+    .....++.|.      ++.+++
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~---~I~iwd~~~~~~~~~~~~~~~~~~~~----~~~v~~l~~~------~~~~~~  547 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNK---KIKIFECESIIKDGRDIHYPVVELAS----RSKLSGICWN------SYIKSQ  547 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCC---EEEEEECCcccccccccccceEEecc----cCceeeEEec------cCCCCE
Confidence            3788899999999999999999887   566776542110  0   00111111    1223567774      235889


Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v  291 (502)
                      ||+|+.||+|+|||+.+..                           ....+.+|...|++++|+|..+.+|++|+.||+|
T Consensus       548 las~~~Dg~v~lWd~~~~~---------------------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v  600 (793)
T PLN00181        548 VASSNFEGVVQVWDVARSQ---------------------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSV  600 (793)
T ss_pred             EEEEeCCCeEEEEECCCCe---------------------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEE
Confidence            9999999999999997522                           2234458999999999998547799999999999


Q ss_pred             EEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-ccceEeecCCeEEEEeCCCCCCEEEE
Q 010769          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~  370 (502)
                      ++||+.++.++..+..+ ..|.++.|++..+.+|++|+.||.|++||++.... ......|...|.++.|.+ + ..+++
T Consensus       601 ~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-~-~~lvs  677 (793)
T PLN00181        601 KLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-S-STLVS  677 (793)
T ss_pred             EEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-C-CEEEE
Confidence            99999999998888754 68999999765448999999999999999987653 334457888999999974 3 47999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE------
Q 010769          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS------  444 (502)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~------  444 (502)
                      ++.|+.|++||++......   ...++..+.+|...+.+++|+|++ .+|++|+.|+.|++|+.....+.....      
T Consensus       678 ~s~D~~ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~  753 (793)
T PLN00181        678 SSTDNTLKLWDLSMSISGI---NETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP  753 (793)
T ss_pred             EECCCEEEEEeCCCCcccc---CCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence            9999999999998642100   025677889999999999999998 899999999999999987665332222      


Q ss_pred             -----ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          445 -----RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       445 -----~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                           ...+...|.+++|+|++. +|++|+.+|.|+||++
T Consensus       754 ~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~  792 (793)
T PLN00181        754 VSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM  792 (793)
T ss_pred             ccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence                 123456799999999999 5889999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=9.9e-34  Score=252.27  Aligned_cols=241  Identities=26%  Similarity=0.426  Sum_probs=218.5

Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +++.|...+|++|+.|++|.|||+.+                           ..+...+.||...|..+++++-. .+|
T Consensus       157 vavdP~n~wf~tgs~DrtikIwDlat---------------------------g~LkltltGhi~~vr~vavS~rH-pYl  208 (460)
T KOG0285|consen  157 VAVDPGNEWFATGSADRTIKIWDLAT---------------------------GQLKLTLTGHIETVRGVAVSKRH-PYL  208 (460)
T ss_pred             EeeCCCceeEEecCCCceeEEEEccc---------------------------CeEEEeecchhheeeeeeecccC-ceE
Confidence            33478899999999999999999986                           44455677999999999999984 599


Q ss_pred             EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769          283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p  362 (502)
                      ++++.|+.|+.||+...+.++.+.+|-+.|.|++.+|.- ..|++|+.|.++++||+|+...+..+.+|...|.++.+.|
T Consensus       209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~  287 (460)
T KOG0285|consen  209 FSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP  287 (460)
T ss_pred             EEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec
Confidence            999999999999999999999999999999999999998 8999999999999999999998888889999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      .++ .+++|+.|++|++||++.+         +....+..|...|.+++.+|.- ..+|+++.|. |+-|++..+.  .+
T Consensus       288 ~dp-qvit~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~g~--f~  353 (460)
T KOG0285|consen  288 TDP-QVITGSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPEGE--FL  353 (460)
T ss_pred             CCC-ceEEecCCceEEEeeeccC---------ceeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCCccc--hh
Confidence            877 7999999999999999997         7788899999999999999976 8888888775 9999999987  45


Q ss_pred             EEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..+.+|.+-|++++...|+  ++++|+.+|.+.+||.+++...++.
T Consensus       354 ~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  354 QNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             hccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccc
Confidence            6688999999999999998  5889999999999999999876554

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=2.5e-32  Score=251.21  Aligned_cols=251  Identities=22%  Similarity=0.389  Sum_probs=217.1

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ..+.+++|+++..+.|.|||..........                 .....+...+.+|...-.+|+|++.....|++|
T Consensus       134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-----------------~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKA-----------------SGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             CCCCcEEEecCCCCCEEEEEeccCCCcccc-----------------cccCCCceEEEeecccccccccccccceeEeec
Confidence            346889999999999999998753332210                 002344556778999889999999877899999


Q ss_pred             ecCCcEEEEECCCC-------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC--CCCccceEeecCCeE
Q 010769          286 SADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--STHSGFKWAVAADVE  356 (502)
Q Consensus       286 s~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~  356 (502)
                      +.|++|++||+...       .+...+.+|...|..++|++....+|++++.|+.+.|||+|+  .+.......|.+.+.
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN  276 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence            99999999999753       235667899999999999999989999999999999999995  444455568899999


Q ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      |++|+|.+..+|++|+.|++|++||+|+.        ..++.++.+|...|.++.|+|+...+||+++.|+.+.|||+..
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNL--------NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhc--------ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            99999999999999999999999999998        5799999999999999999999989999999999999999864


Q ss_pred             ------------CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          437 ------------NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       437 ------------~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                                  +.+.+++...+|...|..+.|+|..+++|++.+.|+.+.||.+..
T Consensus       349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                        234567889999999999999999999999999999999999863

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.1e-31  Score=253.57  Aligned_cols=283  Identities=30%  Similarity=0.494  Sum_probs=230.5

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.++.|+|++++|++++.++   .+.+|.+.....  ......|...    ..++.|       ++++++|++++
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g---~i~i~~~~~~~~--~~~~~~~~~~----i~~~~~-------~~~~~~l~~~~   70 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDG---TIKVWDLETGEL--LRTLKGHTGP----VRDVAA-------SADGTYLASGS   70 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCc---EEEEEEeeCCCc--EEEEecCCcc----eeEEEE-------CCCCCEEEEEc
Confidence            4788999999999999999999776   556666654321  1111112111    135566       67889999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .+|.|++|++....                           ....+..|...|.++.|+++ +.++++++.++.|++|++
T Consensus        71 ~~~~i~i~~~~~~~---------------------------~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~  122 (289)
T cd00200          71 SDKTIRLWDLETGE---------------------------CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV  122 (289)
T ss_pred             CCCeEEEEEcCccc---------------------------ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEEC
Confidence            99999999997532                           12233468889999999998 568888888999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      .+++....+..|...|.++.|+|++ .++++++.++.|++||++..+.......+...+.++.|+|++. .+++++.+|.
T Consensus       123 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~  200 (289)
T cd00200         123 ETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGT  200 (289)
T ss_pred             CCcEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC-EEEEecCCCc
Confidence            9999999999899999999999997 7888888899999999998777665666777899999999875 6777778999


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEE
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      |++||++..         ..+..+..|...+.++.|+|++ .++++++.++.|++|++.+.+  ....+..|...|.+++
T Consensus       201 i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~  268 (289)
T cd00200         201 IKLWDLSTG---------KCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGE--CVQTLSGHTNSVTSLA  268 (289)
T ss_pred             EEEEECCCC---------ceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCce--eEEEccccCCcEEEEE
Confidence            999999875         5566666888899999999985 888888889999999999876  4455567888999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEE
Q 010769          457 FSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       457 ~spd~~~llasg~~dg~i~vwd  478 (502)
                      |+|++. .|++++.||.|++|+
T Consensus       269 ~~~~~~-~l~~~~~d~~i~iw~  289 (289)
T cd00200         269 WSPDGK-RLASGSADGTIRIWD  289 (289)
T ss_pred             ECCCCC-EEEEecCCCeEEecC
Confidence            999988 588999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-33  Score=270.42  Aligned_cols=291  Identities=22%  Similarity=0.350  Sum_probs=242.6

Q ss_pred             Ccccccccccc-CCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          138 DSEDLEDMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~-p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      -.++|.+|+|. |..+.||+|++..   .+++|.......   .++..|.-.+    +++.-       ..+|-+||+|+
T Consensus       322 ~ndEI~Dm~~lG~e~~~laVATNs~---~lr~y~~~~~~c---~ii~GH~e~v----lSL~~-------~~~g~llat~s  384 (775)
T KOG0319|consen  322 YNDEILDMKFLGPEESHLAVATNSP---ELRLYTLPTSYC---QIIPGHTEAV----LSLDV-------WSSGDLLATGS  384 (775)
T ss_pred             CchhheeeeecCCccceEEEEeCCC---ceEEEecCCCce---EEEeCchhhe----eeeee-------cccCcEEEEec
Confidence            45688999886 7889999999887   566664444443   3444443332    34441       24678999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .|.++++|.++...+.                       ........+|+..|.+++++..+..+|+++|.|+++++|++
T Consensus       385 KD~svilWr~~~~~~~-----------------------~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l  441 (775)
T KOG0319|consen  385 KDKSVILWRLNNNCSK-----------------------SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL  441 (775)
T ss_pred             CCceEEEEEecCCcch-----------------------hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence            9999999998532221                       22233456899999999999988899999999999999999


Q ss_pred             CCCee-----e----EEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE
Q 010769          297 AAGKC-----N----LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       297 ~~~~~-----~----~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  367 (502)
                      ...+.     +    .+...|...|+|++.+|+. .+++||+.|++.+||++........+.+|...|.||.|+|.+. +
T Consensus       442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq-~  519 (775)
T KOG0319|consen  442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ-L  519 (775)
T ss_pred             CCcccccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc-e
Confidence            76221     1    1235699999999999999 9999999999999999998887888889999999999999754 8


Q ss_pred             EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010769          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP  447 (502)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~  447 (502)
                      +++++.|++|+||.+.+.         .++.++.+|...|..+.|-.++ ..|++++.||-|++|++.++.  |+.++..
T Consensus       520 laT~SgD~TvKIW~is~f---------SClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e--C~~tlD~  587 (775)
T KOG0319|consen  520 LATCSGDKTVKIWSISTF---------SCLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE--CEMTLDA  587 (775)
T ss_pred             eEeccCCceEEEEEeccc---------eeeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh--hhhhhhh
Confidence            999999999999999997         8999999999999999999998 899999999999999999998  8999999


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      |...|++++.+|... ++++|+.||.|.+|.=-+..
T Consensus       588 H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  588 HNDRVWALSVSPLLD-MFVTGGGDGRIIFWKDVTEE  622 (775)
T ss_pred             ccceeEEEeecCccc-eeEecCCCeEEEEeecCcHH
Confidence            999999999999998 69999999999999755543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.7e-32  Score=273.33  Aligned_cols=286  Identities=22%  Similarity=0.367  Sum_probs=232.5

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCC-CCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESD-GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      +...|.++.|+|+|+.+++++.++   .+.+|...... .....+..|+..+     .++.|       +|++.++++|+
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~---~i~~~~~~~~~~~~~~~l~~h~~~v-----~~~~f-------s~d~~~l~s~s  222 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDG---LIRIWKLEGIKSNLLRELSGHTRGV-----SDVAF-------SPDGSYLLSGS  222 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCC---cEEEeecccccchhhccccccccce-----eeeEE-------CCCCcEEEEec
Confidence            467899999999999999998887   45777663332 1112333344322     45555       89999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .|++|+||++...                          ......+.+|...|++++|+|.+ +++++|+.|++|+|||+
T Consensus       223 ~D~tiriwd~~~~--------------------------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~  275 (456)
T KOG0266|consen  223 DDKTLRIWDLKDD--------------------------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDV  275 (456)
T ss_pred             CCceEEEeeccCC--------------------------CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEec
Confidence            9999999999321                          23444667999999999999996 89999999999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC--ccceEeecC--CeEEEEeCCCCCCEEEEEe
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGFKWAVAA--DVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~--~v~~v~~~p~~~~~l~~~~  372 (502)
                      ++++++..+.+|...|++++|++++ ++|++++.|+.|++||+.++..  ......+..  .+.+++|+|++. ++++++
T Consensus       276 ~~~~~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~  353 (456)
T KOG0266|consen  276 RTGECVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSAS  353 (456)
T ss_pred             cCCeEEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEec
Confidence            9999999999999999999999999 8999999999999999999883  333333333  599999999876 899999


Q ss_pred             CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe---eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-
Q 010769          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-  448 (502)
Q Consensus       373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~-  448 (502)
                      .|+.+++||++..         ..+....+|...+   .+..+++.+ .++++|+.|+.|++|++.+..  .+..+.+| 
T Consensus       354 ~d~~~~~w~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~--~~~~l~~h~  421 (456)
T KOG0266|consen  354 LDRTLKLWDLRSG---------KSVGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGG--ILQRLEGHS  421 (456)
T ss_pred             CCCeEEEEEccCC---------cceeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccc--hhhhhcCCC
Confidence            9999999999987         6677777777643   344455666 999999999999999999876  46667778 


Q ss_pred             CCCEEEEEEcCCCCcEEEEEe--CCCcEEEEECC
Q 010769          449 AGAVFSVAFSEDSPFVLAIGG--SKGKLEIWDTL  480 (502)
Q Consensus       449 ~~~v~~~~~spd~~~llasg~--~dg~i~vwd~~  480 (502)
                      ...+..+.++|..+ ++++++  .|+.+++|...
T Consensus       422 ~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  422 KAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence            88999999999998 588887  68899999753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-31  Score=230.83  Aligned_cols=283  Identities=21%  Similarity=0.397  Sum_probs=223.2

Q ss_pred             CCCccccccccccCC-CceEEEEEecCCcceeEEEEEecCCCCCCceeee------eccccCCCcceeeeecCCCCCCCC
Q 010769          136 DEDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH------HHIIIPAFPLCMAWLDCPLKDREK  208 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~-~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~w~~~~~~~s~~  208 (502)
                      ..|.+.+..++|+|- |.+||+++.+.   .++||.... ..   .+...      |...+    -.++|       +|.
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk---~vriw~~~~-~~---s~~ck~vld~~hkrsV----RsvAw-------sp~   72 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDK---AVRIWSTSS-GD---SWTCKTVLDDGHKRSV----RSVAW-------SPH   72 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCc---eEEEEecCC-CC---cEEEEEeccccchhee----eeeee-------cCC
Confidence            347778999999999 99999999887   456665543 11   22211      22222    35566       899


Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      |++||+|+.|.++.||.-..                         ........+.||...|.|++|+++ +++||+||.|
T Consensus        73 g~~La~aSFD~t~~Iw~k~~-------------------------~efecv~~lEGHEnEVK~Vaws~s-G~~LATCSRD  126 (312)
T KOG0645|consen   73 GRYLASASFDATVVIWKKED-------------------------GEFECVATLEGHENEVKCVAWSAS-GNYLATCSRD  126 (312)
T ss_pred             CcEEEEeeccceEEEeecCC-------------------------CceeEEeeeeccccceeEEEEcCC-CCEEEEeeCC
Confidence            99999999999999997432                         113445567799999999999999 6699999999


Q ss_pred             CcEEEEECCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC---CCccceEeecCCeEEEEeCC
Q 010769          289 KQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---THSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       289 g~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~v~~~p  362 (502)
                      +.|.||.+..+   .++..++.|+..|..+.|||.. .+|+++++|.+|++|.-...   .+...+..|...|.+++|++
T Consensus       127 KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~  205 (312)
T KOG0645|consen  127 KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN  205 (312)
T ss_pred             CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC
Confidence            99999998754   5788899999999999999998 89999999999999987632   23444556777999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC--e-
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--P-  439 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~--~-  439 (502)
                      .|. .+++++.|++|+||-..+.         -    -..|..++..+.|. +  ..|++++.|+.|++|.-....  + 
T Consensus       206 ~G~-rl~s~sdD~tv~Iw~~~~~---------~----~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~  268 (312)
T KOG0645|consen  206 IGS-RLVSCSDDGTVSIWRLYTD---------L----SGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPS  268 (312)
T ss_pred             CCc-eEEEecCCcceEeeeeccC---------c----chhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCch
Confidence            875 7999999999999987643         1    12478899999999 3  689999999999999766421  1 


Q ss_pred             -e-EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          440 -S-CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       440 -~-~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                       . .......|...|++++|.|..+.+|++||.||.|++|.+.
T Consensus       269 ~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  269 WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence             1 1223456788999999999655579999999999999874

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-32  Score=257.65  Aligned_cols=288  Identities=19%  Similarity=0.304  Sum_probs=239.2

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      +.+.|.++.+||+...++++-..|   .+.||.|+....    ....+   +...|...      .+|-...+++++|+.
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG---~V~IWnyetqtm----Vksfe---V~~~PvRa------~kfiaRknWiv~GsD   75 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNG---DVQIWNYETQTM----VKSFE---VSEVPVRA------AKFIARKNWIVTGSD   75 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecC---eeEEEeccccee----eeeee---ecccchhh------heeeeccceEEEecC
Confidence            678899999999999999999998   569999987652    12222   11222211      112356889999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      |..||||++++++.                           ...+..|.+-|.||+.+|. ..+++|+|.|-+|++||.+
T Consensus        76 D~~IrVfnynt~ek---------------------------V~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we  127 (794)
T KOG0276|consen   76 DMQIRVFNYNTGEK---------------------------VKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWE  127 (794)
T ss_pred             CceEEEEeccccee---------------------------eEEeeccccceeeeeecCC-CCeEEecCCccEEEEeecc
Confidence            99999999987443                           4456789999999999999 6699999999999999997


Q ss_pred             CC-eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC-CCEEEEEeCCC
Q 010769          298 AG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA-EHSFVVSLEDG  375 (502)
Q Consensus       298 ~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~dg  375 (502)
                      .. .+.++|.+|+.-|.+++|+|..++.|++++.|++|++|.+.++.+...+.+|...|+|+.+-+.+ ..++++|+.|.
T Consensus       128 ~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~  207 (794)
T KOG0276|consen  128 NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL  207 (794)
T ss_pred             CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence            64 78899999999999999999999999999999999999999988888788999999999998754 33899999999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      +|++||.++.         .++.++.+|...|+.+.|+|.- .+++|||.||+|+||+..+-+  +..++......++|+
T Consensus       208 tiKvWDyQtk---------~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~--lE~tLn~gleRvW~I  275 (794)
T KOG0276|consen  208 TIKVWDYQTK---------SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYK--LEKTLNYGLERVWCI  275 (794)
T ss_pred             eEEEeecchH---------HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCccee--hhhhhhcCCceEEEE
Confidence            9999999997         8999999999999999999987 799999999999999988876  445555667889999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          456 AFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       456 ~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +-.+.+. .++.|...|.|. ..+....
T Consensus       276 ~~~k~~~-~i~vG~Deg~i~-v~lgree  301 (794)
T KOG0276|consen  276 AAHKGDG-KIAVGFDEGSVT-VKLGREE  301 (794)
T ss_pred             eecCCCC-eEEEeccCCcEE-EEccCCC
Confidence            9988887 477777666543 3443333

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.7e-31  Score=247.84  Aligned_cols=323  Identities=16%  Similarity=0.253  Sum_probs=245.1

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      .+|..-|.|+.|+|+|.++++++.++     ++++|+...+....... ......+-.+++.|       +||++.|+++
T Consensus       187 r~HskFV~~VRysPDG~~Fat~gsDg-----ki~iyDGktge~vg~l~-~~~aHkGsIfalsW-------sPDs~~~~T~  253 (603)
T KOG0318|consen  187 REHSKFVNCVRYSPDGSRFATAGSDG-----KIYIYDGKTGEKVGELE-DSDAHKGSIFALSW-------SPDSTQFLTV  253 (603)
T ss_pred             cccccceeeEEECCCCCeEEEecCCc-----cEEEEcCCCccEEEEec-CCCCccccEEEEEE-------CCCCceEEEe
Confidence            56889999999999999999999999     99999987762211111 01122233478888       8999999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchh--hhhhc--------------cccCCccccccccCCcccceeeEEecCCCC
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEE--KKKKK--------------SKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~--~~~~~--------------~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                      +.|.+++|||+.+.........-.....+  .-.|.              --..........+.||...|++|..+|++ 
T Consensus       254 SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-  332 (603)
T KOG0318|consen  254 SADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-  332 (603)
T ss_pred             cCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-
Confidence            99999999999876554433322221111  00000              00011223556778999999999999995 


Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEe-ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-----------
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-----------  347 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----------  347 (502)
                      .+|+||+.||.|.-|+..++..-+.. +.|+..|.+++-+..+  .+++++.|.++++.++........           
T Consensus       333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~  410 (603)
T KOG0318|consen  333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKG  410 (603)
T ss_pred             CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCcee
Confidence            79999999999999999998766554 7899999999988755  588999999999997642111000           


Q ss_pred             --------------------e--------EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE
Q 010769          348 --------------------K--------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       348 --------------------~--------~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  399 (502)
                                          +        ....-...+++++|++. .+++|+.||.|++|.+.....       .....
T Consensus       411 lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~l-------~ee~~  482 (603)
T KOG0318|consen  411 LAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDEL-------KEEAK  482 (603)
T ss_pred             EEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC-EEEEecccceEEEEEecCCcc-------cceee
Confidence                                0        00122457889999865 899999999999999987531       34445


Q ss_pred             EecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      +..|.++|++++|+|++ .+||+|...+.+.+||+.+.+. .......|.+.|.+++|+|+.. ++|+|+-|..|.||++
T Consensus       483 ~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  483 LLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSV  559 (603)
T ss_pred             eecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEc
Confidence            67799999999999998 9999999999999999999875 4444556899999999999998 7999999999999999


Q ss_pred             CCCccc
Q 010769          480 LSDAGI  485 (502)
Q Consensus       480 ~~~~~~  485 (502)
                      ......
T Consensus       560 ~kP~~~  565 (603)
T KOG0318|consen  560 KKPAKH  565 (603)
T ss_pred             cChhhh
Confidence            875544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-32  Score=263.54  Aligned_cols=296  Identities=23%  Similarity=0.328  Sum_probs=242.8

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      .+++..+...+....+++.+.+.     .+..|+..+.. ...+.+.|+.+     +.+.++      .|..++||+++.
T Consensus       281 ~~e~~~~~~~~~~~~~l~vtaeQ-----nl~l~d~~~l~i~k~ivG~ndEI-----~Dm~~l------G~e~~~laVATN  344 (775)
T KOG0319|consen  281 SEEIDHLLAIESMSQLLLVTAEQ-----NLFLYDEDELTIVKQIVGYNDEI-----LDMKFL------GPEESHLAVATN  344 (775)
T ss_pred             chhhhcceeccccCceEEEEccc-----eEEEEEccccEEehhhcCCchhh-----eeeeec------CCccceEEEEeC
Confidence            33477777777777777777776     55555544431 11333455544     455554      678899999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      .+.+|+|++.+..+.                            .+.||+..|.+|....+ +.+|+|||.|+++++|.++
T Consensus       345 s~~lr~y~~~~~~c~----------------------------ii~GH~e~vlSL~~~~~-g~llat~sKD~svilWr~~  395 (775)
T KOG0319|consen  345 SPELRLYTLPTSYCQ----------------------------IIPGHTEAVLSLDVWSS-GDLLATGSKDKSVILWRLN  395 (775)
T ss_pred             CCceEEEecCCCceE----------------------------EEeCchhheeeeeeccc-CcEEEEecCCceEEEEEec
Confidence            999999988765442                            34589999999995555 3699999999999999885


Q ss_pred             CCe----eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc--c-------ceEeecCCeEEEEeCCCC
Q 010769          298 AGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--G-------FKWAVAADVESLAWDPHA  364 (502)
Q Consensus       298 ~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~-------~~~~~~~~v~~v~~~p~~  364 (502)
                      .+.    ++....+|+..|.+++++..+..+|++++.|+++++|++...+..  .       ....|...|+||+.+|+.
T Consensus       396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd  475 (775)
T KOG0319|consen  396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND  475 (775)
T ss_pred             CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence            442    455668999999999999999999999999999999999872211  1       123578899999999976


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      . ++++|+.|.+.++|++...         .....+.+|...|.++.|+|.. ++|+|+|.|++|+||.+.+..  |+.+
T Consensus       476 k-LiAT~SqDktaKiW~le~~---------~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS--ClkT  542 (775)
T KOG0319|consen  476 K-LIATGSQDKTAKIWDLEQL---------RLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS--CLKT  542 (775)
T ss_pred             c-eEEecccccceeeecccCc---------eEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccce--eeee
Confidence            5 9999999999999999965         7889999999999999999987 999999999999999999987  8999


Q ss_pred             ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010769          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                      +.+|...|..+.|-.++.+ |++++.||-|++|+++++.|+.++=.|..
T Consensus       543 ~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt~eC~~tlD~H~D  590 (775)
T KOG0319|consen  543 FEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKTNECEMTLDAHND  590 (775)
T ss_pred             ecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccchhhhhhhhhccc
Confidence            9999999999999999995 88999999999999999999988776654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=243.35  Aligned_cols=290  Identities=16%  Similarity=0.286  Sum_probs=233.2

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA  213 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la  213 (502)
                      .+|.++|.-++|+++|++||+|+.+.   +.-+|.......  -...+..|+..+     ..+.|       |||.++|+
T Consensus       221 ~~htdEVWfl~FS~nGkyLAsaSkD~---Taiiw~v~~d~~~kl~~tlvgh~~~V-----~yi~w-------SPDdryLl  285 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHNGKYLASASKDS---TAIIWIVVYDVHFKLKKTLVGHSQPV-----SYIMW-------SPDDRYLL  285 (519)
T ss_pred             hhCCCcEEEEEEcCCCeeEeeccCCc---eEEEEEEecCcceeeeeeeecccCce-----EEEEE-------CCCCCeEE
Confidence            57999999999999999999999886   456665543321  011233444433     46677       89999999


Q ss_pred             EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v  293 (502)
                      +++.+..+.+||+.+++.....                          ..+|...+.+++|.|+ +..+++|+.|+++..
T Consensus       286 aCg~~e~~~lwDv~tgd~~~~y--------------------------~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~  338 (519)
T KOG0293|consen  286 ACGFDEVLSLWDVDTGDLRHLY--------------------------PSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIM  338 (519)
T ss_pred             ecCchHheeeccCCcchhhhhc--------------------------ccCcCCCcceeEEccC-CceeEecCCCCcEEE
Confidence            9999999999999987654421                          1246688999999999 568999999999999


Q ss_pred             EECCCCeeeEEeccC-CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEe
Q 010769          294 WDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       294 wd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  372 (502)
                      ||+.. ......++- ...|.+++..++| ..+++.+.|..|++++..+..... ......+|++++.+.++. ++++.-
T Consensus       339 wdlDg-n~~~~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k-~~LvnL  414 (519)
T KOG0293|consen  339 WDLDG-NILGNWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGK-LALVNL  414 (519)
T ss_pred             ecCCc-chhhcccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCc-EEEEEc
Confidence            99864 334444332 3579999999999 888888899999999988755443 456678899999999875 888889


Q ss_pred             CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCC--eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010769          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG  450 (502)
Q Consensus       373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~  450 (502)
                      .+..+++||+...         ..+..+.+|...  +..-+|.-....++++||.|+.|+||+..+++  ++..+.+|..
T Consensus       415 ~~qei~LWDl~e~---------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk--ll~~LsGHs~  483 (519)
T KOG0293|consen  415 QDQEIHLWDLEEN---------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK--LLAVLSGHSK  483 (519)
T ss_pred             ccCeeEEeecchh---------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc--eeEeecCCcc
Confidence            9999999999964         677788888653  55556665555899999999999999999998  6888999999


Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       451 ~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      .|++++|+|..++++|+||.||+||||-....
T Consensus       484 ~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  484 TVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99999999999999999999999999987643

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.9e-33  Score=246.89  Aligned_cols=277  Identities=20%  Similarity=0.380  Sum_probs=232.1

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      ....|.|+++  ++..+++|..+.   +++||..+.-.. ...|++|...+     +|+.+         +.+.|++|+.
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDn---TikiWD~n~~~c-~~~L~GHtGSV-----LCLqy---------d~rviisGSS  255 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDN---TIKIWDKNSLEC-LKILTGHTGSV-----LCLQY---------DERVIVSGSS  255 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccC---ceEEeccccHHH-HHhhhcCCCcE-----Eeeec---------cceEEEecCC
Confidence            4567888776  466788998886   678887664432 22556666555     79876         5779999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      |.+|+|||+++++++.                           .+.+|..+|..+.|+..   +++++|.|.++.|||+.
T Consensus       256 DsTvrvWDv~tge~l~---------------------------tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~  305 (499)
T KOG0281|consen  256 DSTVRVWDVNTGEPLN---------------------------TLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMA  305 (499)
T ss_pred             CceEEEEeccCCchhh---------------------------HHhhhcceeEEEEEeCC---EEEEecCCceeEEEecc
Confidence            9999999998755443                           45689999999999865   89999999999999998


Q ss_pred             CCe---eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769          298 AGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       298 ~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  374 (502)
                      ...   +.+.+.+|...|+.+.|+.   +++++++.|.+|++|++.+...+....+|...|.|+.+.   ..++++|+.|
T Consensus       306 sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr---~rlvVSGSSD  379 (499)
T KOG0281|consen  306 SPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSD  379 (499)
T ss_pred             CchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc---CeEEEecCCC
Confidence            764   3456689999999999975   689999999999999999999998888999999999986   3489999999


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-------eEEEEecC
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------SCIASRNP  447 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-------~~~~~~~~  447 (502)
                      .+|++||+..+         .++..+.+|..-|.++.|..   ..+++|+.||+|+|||+....-       .|+.....
T Consensus       380 ntIRlwdi~~G---------~cLRvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~  447 (499)
T KOG0281|consen  380 NTIRLWDIECG---------ACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE  447 (499)
T ss_pred             ceEEEEecccc---------HHHHHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhh
Confidence            99999999987         88999999999999999985   7899999999999999987532       36667778


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      |.+.|+.++|..-   .+++++.|.+|.|||+..+..-
T Consensus       448 hsgRVFrLQFD~f---qIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  448 HSGRVFRLQFDEF---QIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ccceeEEEeecce---EEEeccCCCeEEEEEcCCCCcc
Confidence            9999999999653   4778889999999999887654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.4e-32  Score=252.61  Aligned_cols=289  Identities=16%  Similarity=0.294  Sum_probs=238.5

Q ss_pred             CCCccccccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769          136 DEDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~  214 (502)
                      ..|...|+++.|.| .+.+|++++.++   .++||.+..... ....|.+|..++    ..+.|       +++|..+++
T Consensus       211 ~gH~kgvsai~~fp~~~hLlLS~gmD~---~vklW~vy~~~~-~lrtf~gH~k~V----rd~~~-------s~~g~~fLS  275 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFPKKGHLLLSGGMDG---LVKLWNVYDDRR-CLRTFKGHRKPV----RDASF-------NNCGTSFLS  275 (503)
T ss_pred             cCCccccchhhhccceeeEEEecCCCc---eEEEEEEecCcc-eehhhhcchhhh----hhhhc-------cccCCeeee
Confidence            57999999999999 899999999997   456665544222 234455565444    34444       788999999


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      ++.|+.|++||++++.+...+.                            -...++|+.|+|++.+.+++|+.|+.|+.|
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~----------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w  327 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFH----------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQW  327 (503)
T ss_pred             eecceeeeeeccccceEEEEEe----------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence            9999999999999877654321                            235689999999988999999999999999


Q ss_pred             ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCCCCCEEEEEeC
Q 010769          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      |+++++.++.+..|-+.|..+.|-+.+ ..+++++.|++++||+.+.+....... .......|+..+|+++ .+++-+.
T Consensus       328 DiRs~kvvqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~  405 (503)
T KOG0282|consen  328 DIRSGKVVQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSM  405 (503)
T ss_pred             eccchHHHHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhcc
Confidence            999999999999999999999999999 899999999999999999877654332 3344578899999876 7888899


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCC--CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCC
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA  451 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  451 (502)
                      ++.|.+|.+.....      ......+.+|.  +.-..+.|||+| .+|++|..||.+.+||.++.+  .+..+..|.++
T Consensus       406 dN~i~ifs~~~~~r------~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~k--l~~~lkah~~~  476 (503)
T KOG0282|consen  406 DNYIAIFSTVPPFR------LNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTK--LVSKLKAHDQP  476 (503)
T ss_pred             CceEEEEecccccc------cCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhh--hhhccccCCcc
Confidence            99999999765421      23334556664  566788999999 999999999999999999987  57778899999


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          452 VFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       452 v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      +..+.|+|..+..+||||.+|.|++|+
T Consensus       477 ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  477 CIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEEEecCCCcceeEecccCceeEecC
Confidence            999999999888899999999999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-32  Score=230.87  Aligned_cols=219  Identities=23%  Similarity=0.385  Sum_probs=197.6

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCC-CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  343 (502)
                      -.+.+..++|++...+.+++++.||+++|||+.. ..+++.++.|...|.++.|++.....+++++.|++|++|+...+.
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            4578999999999999999999999999999653 368899999999999999999888899999999999999999988


Q ss_pred             CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE
Q 010769          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .+..+.+|...|..+.|+|..+++|++++.||.+++||+|..        .+.+. +..|...|.++.|+...+++|+||
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg  209 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------GKFMS-IEAHNSEILCCDWSKYNHNVLATG  209 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC--------CceeE-EEeccceeEeecccccCCcEEEec
Confidence            888888899999999999999999999999999999999987        34444 899999999999999888999999


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010769          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                      +.|+.|++||+++.+ ..+..+.+|.-.|..+.|||....+||+++.|-+++|||...+....+...++.
T Consensus       210 ~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht  278 (311)
T KOG0277|consen  210 GVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT  278 (311)
T ss_pred             CCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence            999999999999877 367888999999999999999888999999999999999997776666555443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.6e-31  Score=236.89  Aligned_cols=284  Identities=16%  Similarity=0.289  Sum_probs=235.8

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCcee--eeeccccCCCcceeeeecCCCCCCCCCCEEE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY--VHHHIIIPAFPLCMAWLDCPLKDREKGNFMA  213 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la  213 (502)
                      ..|.+.|.++++.|.+..+++|+.++   +++||.+..+..   .+.  +|-..        +.    .+++|+--.||.
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~Dr---tikIwDlatg~L---kltltGhi~~--------vr----~vavS~rHpYlF  209 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADR---TIKIWDLATGQL---KLTLTGHIET--------VR----GVAVSKRHPYLF  209 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCc---eeEEEEcccCeE---EEeecchhhe--------ee----eeeecccCceEE
Confidence            56899999999999999999999997   779998887653   222  22211        11    133378889999


Q ss_pred             EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v  293 (502)
                      +++.|+.|+.|||..                           .+....+.||-..|.||+.+|. -..|++|+.|.+++|
T Consensus       210 s~gedk~VKCwDLe~---------------------------nkvIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~Rv  261 (460)
T KOG0285|consen  210 SAGEDKQVKCWDLEY---------------------------NKVIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRV  261 (460)
T ss_pred             EecCCCeeEEEechh---------------------------hhhHHHhccccceeEEEecccc-ceeEEecCCcceEEE
Confidence            999999999999974                           4455567799999999999998 569999999999999


Q ss_pred             EECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769          294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      ||+++...+..+.+|..+|.++.+.|.+ ..+++|+.|++|++||++.++.......|...+.+++.+|. .+.|++++.
T Consensus       262 WDiRtr~~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~-e~~fASas~  339 (460)
T KOG0285|consen  262 WDIRTRASVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK-ENLFASASP  339 (460)
T ss_pred             eeecccceEEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc-hhhhhccCC
Confidence            9999999999999999999999999988 67999999999999999999988888889999999999996 345666654


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE-Ee--cC---
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA-SR--NP---  447 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~-~~--~~---  447 (502)
                       ..|+.|++..+         ..+..+.+|..-|++++.+.++  ++++|+..|.+.+||.+++...... +.  .+   
T Consensus       340 -dnik~w~~p~g---------~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~  407 (460)
T KOG0285|consen  340 -DNIKQWKLPEG---------EFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE  407 (460)
T ss_pred             -ccceeccCCcc---------chhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccc
Confidence             46899999887         6677799999999999999864  8999999999999999987521111 11  11   


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      ....|++.+|...|. .|++|..|.+|++|.-.
T Consensus       408 sEagI~as~fDktg~-rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  408 SEAGIFASCFDKTGS-RLITGEADKTIKMYKED  439 (460)
T ss_pred             cccceeEEeecccCc-eEEeccCCcceEEEecc
Confidence            134589999999998 59999999999999753

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-30  Score=251.90  Aligned_cols=322  Identities=18%  Similarity=0.291  Sum_probs=251.5

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCC--cceeeeecCCCCCCCCCCEEEEec
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF--PLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      ...|.+++|+|+|+++|+|+..    .++||..-.......+.++.|..-...+  ..++.|       +.|.++|++|+
T Consensus        96 k~~v~~i~fSPng~~fav~~gn----~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~W-------s~DSr~l~~gs  164 (893)
T KOG0291|consen   96 KRGVGAIKFSPNGKFFAVGCGN----LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDW-------SDDSRLLVTGS  164 (893)
T ss_pred             cCccceEEECCCCcEEEEEecc----eeEEEecCcchhcccCcceEeeeecCCccceeEEEe-------ccCCceEEecc
Confidence            3579999999999999999866    4788876544332334444443333333  357777       78999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchh--------------------------hhhh-cccc-----------------
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEE--------------------------KKKK-KSKK-----------------  252 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~--------------------------~~~~-~~~~-----------------  252 (502)
                      .|-.++||.++..+.+.+....|-.+.-                          ...+ ...+                 
T Consensus       165 rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~  244 (893)
T KOG0291|consen  165 RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDG  244 (893)
T ss_pred             ccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccc
Confidence            9999999999877765544333321111                          0000 0000                 


Q ss_pred             -------CCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEE
Q 010769          253 -------GKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL  325 (502)
Q Consensus       253 -------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  325 (502)
                             .-.+..++.+......|++.+|++. .++|++|-..|...+|.+..-.+++.+.-...+|..+.|+..| ..|
T Consensus       245 Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~-t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG-DWi  322 (893)
T KOG0291|consen  245 EEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKG-TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG-DWI  322 (893)
T ss_pred             hhhhcceEEEEEEeeeecccccceeeeeccCC-ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC-CEE
Confidence                   0011112333444478999999998 7899999999999999999999999998778899999999999 666


Q ss_pred             EEEEC-CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC
Q 010769          326 LSGSF-DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD  404 (502)
Q Consensus       326 ~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~  404 (502)
                      +.|+. =|.+.||+.++...+....+|...+++++++|+|. ++++|+.||.|++||.+.+         -+..++..|+
T Consensus       323 A~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sg---------fC~vTFteHt  392 (893)
T KOG0291|consen  323 AFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSG---------FCFVTFTEHT  392 (893)
T ss_pred             EEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCc---------eEEEEeccCC
Confidence            66654 58999999999888887888999999999999986 8999999999999999987         8899999999


Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC---------e---------------------------------eEE
Q 010769          405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ---------P---------------------------------SCI  442 (502)
Q Consensus       405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~---------~---------------------------------~~~  442 (502)
                      +.|+.+.|+..+ +.|++.|.||+|+.||+...+         +                                 ..+
T Consensus       393 s~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll  471 (893)
T KOG0291|consen  393 SGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL  471 (893)
T ss_pred             CceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence            999999999998 999999999999999986531         0                                 123


Q ss_pred             EEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      -.+.+|.++|.+++|+|.+. +|++|+.|.+|++||+-.....
T Consensus       472 DiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~  513 (893)
T KOG0291|consen  472 DILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGT  513 (893)
T ss_pred             ehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCce
Confidence            33468999999999999999 7999999999999999766433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.7e-30  Score=221.04  Aligned_cols=281  Identities=17%  Similarity=0.267  Sum_probs=221.9

Q ss_pred             ccccccCcccceeccCCCCCCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeee-cc
Q 010769          109 GVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHH-HI  187 (502)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~-~~  187 (502)
                      .+.+|....|..+....-           .+..|+.+.+.|++++||+|+..    ++++|.++........-|..| ..
T Consensus        21 TIRfWqa~tG~C~rTiqh-----------~dsqVNrLeiTpdk~~LAaa~~q----hvRlyD~~S~np~Pv~t~e~h~kN   85 (311)
T KOG0315|consen   21 TIRFWQALTGICSRTIQH-----------PDSQVNRLEITPDKKDLAAAGNQ----HVRLYDLNSNNPNPVATFEGHTKN   85 (311)
T ss_pred             eeeeeehhcCeEEEEEec-----------CccceeeEEEcCCcchhhhccCC----eeEEEEccCCCCCceeEEeccCCc
Confidence            455565555555443221           35689999999999999999877    478887776665222222233 22


Q ss_pred             ccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccc
Q 010769          188 IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD  267 (502)
Q Consensus       188 ~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  267 (502)
                      +     ..+       +|..+|+++++|+.||+++|||+....+.+                            ...|..
T Consensus        86 V-----taV-------gF~~dgrWMyTgseDgt~kIWdlR~~~~qR----------------------------~~~~~s  125 (311)
T KOG0315|consen   86 V-----TAV-------GFQCDGRWMYTGSEDGTVKIWDLRSLSCQR----------------------------NYQHNS  125 (311)
T ss_pred             e-----EEE-------EEeecCeEEEecCCCceEEEEeccCcccch----------------------------hccCCC
Confidence            2     233       336789999999999999999997533221                            225789


Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC--
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--  344 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--  344 (502)
                      +|+++..+|+ ..-|++|..+|.|++||+....+.+.+. .....|+++...|+| .+++++...|++++|++-....  
T Consensus       126 pVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s  203 (311)
T KOG0315|consen  126 PVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTAS  203 (311)
T ss_pred             CcceEEecCC-cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccc
Confidence            9999999999 6689999999999999999887776663 345689999999999 8999999999999999876443  


Q ss_pred             ----ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769          345 ----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       345 ----~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                          +..+..|.+.+..+.++|++. ++++++.|.+++||++...        .+.-..+.+|...+..++||.++ .+|
T Consensus       204 ~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~--------~kle~~l~gh~rWvWdc~FS~dg-~Yl  273 (311)
T KOG0315|consen  204 ELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF--------FKLELVLTGHQRWVWDCAFSADG-EYL  273 (311)
T ss_pred             cceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCc--------eeeEEEeecCCceEEeeeeccCc-cEE
Confidence                223456788899999999876 8999999999999999876        36667889999999999999998 999


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc
Q 010769          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      +||+.|+.+++|++..++  .+....+|.....|++..
T Consensus       274 vTassd~~~rlW~~~~~k--~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  274 VTASSDHTARLWDLSAGK--EVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EecCCCCceeecccccCc--eeeecCCcccccEEEEee
Confidence            999999999999999998  577778887777777653

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=239.94  Aligned_cols=244  Identities=21%  Similarity=0.300  Sum_probs=220.2

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      ++|+-..+++++.|++|++||+.+++.                           ...++||++.|.+|+|+.. +.+|++
T Consensus       116 ~hp~~~~v~~as~d~tikv~D~~tg~~---------------------------e~~LrGHt~sv~di~~~a~-Gk~l~t  167 (406)
T KOG0295|consen  116 FHPSEALVVSASEDATIKVFDTETGEL---------------------------ERSLRGHTDSVFDISFDAS-GKYLAT  167 (406)
T ss_pred             eccCceEEEEecCCceEEEEEccchhh---------------------------hhhhhccccceeEEEEecC-ccEEEe
Confidence            378888999999999999999987544                           3456799999999999998 579999


Q ss_pred             EecCCcEEEEECCC-CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769          285 ASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       285 gs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  363 (502)
                      +|.|-.+++||..+ .++++.+.+|.-.|.++.|-|.| .++++++.|.+|+.|++.++-++..+.+|...|..++.+.+
T Consensus       168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D  246 (406)
T KOG0295|consen  168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD  246 (406)
T ss_pred             cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCC
Confidence            99999999999987 56788888999999999999999 99999999999999999999998888899999999999998


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC--------------CCCEEEEEeCCCcE
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------------VPNLLATGSTDKMV  429 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~--------------~~~~l~t~s~dg~i  429 (502)
                      |. ++++++.|.+|++|-+.+.         .+...+..|..+|-+++|.|.              +..++++++.|++|
T Consensus       247 Gt-i~As~s~dqtl~vW~~~t~---------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI  316 (406)
T KOG0295|consen  247 GT-IIASCSNDQTLRVWVVATK---------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI  316 (406)
T ss_pred             ee-EEEecCCCceEEEEEeccc---------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence            75 8999999999999999986         667778889999999999773              22589999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      ++||+.++.  ++.++.+|...|..++|+|.|+| |+++..|+++++||+++.+++.....
T Consensus       317 k~wdv~tg~--cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~~cmk~~~a  374 (406)
T KOG0295|consen  317 KIWDVSTGM--CLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNLQCMKTLEA  374 (406)
T ss_pred             EEEeccCCe--EEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccceeeeccCC
Confidence            999999997  89999999999999999999997 88889999999999999999876653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=244.32  Aligned_cols=231  Identities=26%  Similarity=0.462  Sum_probs=204.1

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .+|+++         +...+++|..|.+|+|||.+...                           ....+.||++.|.||
T Consensus       200 VYClQY---------DD~kiVSGlrDnTikiWD~n~~~---------------------------c~~~L~GHtGSVLCL  243 (499)
T KOG0281|consen  200 VYCLQY---------DDEKIVSGLRDNTIKIWDKNSLE---------------------------CLKILTGHTGSVLCL  243 (499)
T ss_pred             eEEEEe---------cchhhhcccccCceEEeccccHH---------------------------HHHhhhcCCCcEEee
Confidence            367765         67789999999999999987633                           334567999999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc---cceE
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKW  349 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~  349 (502)
                      .|..   .+|++||.|.+|+|||+++++++.++.+|...|..+.|+.   .++++++.|.++.+||+.++...   ....
T Consensus       244 qyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLv  317 (499)
T KOG0281|consen  244 QYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLV  317 (499)
T ss_pred             eccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHh
Confidence            9964   3999999999999999999999999999999999999985   58999999999999999987643   2355


Q ss_pred             eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      +|...|+.+.|+.   .++++++.|.+|++|++.+.         ..+.++.+|...|.|+.+.   .+++++||.|.+|
T Consensus       318 GHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~---------efvRtl~gHkRGIAClQYr---~rlvVSGSSDntI  382 (499)
T KOG0281|consen  318 GHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTC---------EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTI  382 (499)
T ss_pred             hhhhheeeecccc---ceEEEecCCceEEEEeccce---------eeehhhhcccccceehhcc---CeEEEecCCCceE
Confidence            8889999999974   38999999999999999997         8899999999999999887   3899999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      ++||+..+.  ++..+.+|..-|.++.|...   .+++|+.||+|+|||+.++...
T Consensus       383 Rlwdi~~G~--cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  383 RLWDIECGA--CLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             EEEeccccH--HHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCC
Confidence            999999998  78888999999999999765   4899999999999999887654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-30  Score=241.87  Aligned_cols=285  Identities=22%  Similarity=0.323  Sum_probs=225.7

Q ss_pred             CCccccccccccCCCce-EEEEEecCCcceeEEEEEecCCCCCCc-eeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769          137 EDSEDLEDMTINPNDAV-IVCARNEDDVSHLEVYILEESDGGDPN-LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~-l~~~~~~~~~~~l~v~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~  214 (502)
                      ++.+.|.+++|+|...+ +|++++      .++-+|........+ +....+..     ..       +.|-.||.+||+
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~S------~rvqly~~~~~~~~k~~srFk~~v-----~s-------~~fR~DG~Llaa   85 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTSS------VRVQLYSSVTRSVRKTFSRFKDVV-----YS-------VDFRSDGRLLAA   85 (487)
T ss_pred             cccCcceeEecCCCCCCceEEecc------cEEEEEecchhhhhhhHHhhccce-----eE-------EEeecCCeEEEc
Confidence            34678999999998654 333332      255555443321111 11222211     22       223579999999


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      |...|.|+|||+.+                           +.....+.+|+.+|..+.|+|.+..+|++|+.|+.+++|
T Consensus        86 GD~sG~V~vfD~k~---------------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~  138 (487)
T KOG0310|consen   86 GDESGHVKVFDMKS---------------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW  138 (487)
T ss_pred             cCCcCcEEEecccc---------------------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence            99999999999643                           345556779999999999999988999999999999999


Q ss_pred             ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  374 (502)
                      |+.+......+.+|++.|.|.+|+|..+.+++||++||.|++||+|..........|..+|.++.+-|.|. ++++++ .
T Consensus       139 d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs-~iasAg-G  216 (487)
T KOG0310|consen  139 DLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS-LIASAG-G  216 (487)
T ss_pred             EcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-EEEEcC-C
Confidence            99999887789999999999999999888999999999999999999876666788999999999999765 455544 5


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEE
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  454 (502)
                      ..|++||+-++        .+.+..+..|...|+|+++..++ ..|++|+-|+.|++||+.+.+  .+.... -.++|.+
T Consensus       217 n~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~K--vv~s~~-~~~pvLs  284 (487)
T KOG0310|consen  217 NSVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYK--VVHSWK-YPGPVLS  284 (487)
T ss_pred             CeEEEEEecCC--------ceehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccceE--EEEeee-cccceee
Confidence            68999999987        46666666799999999999987 999999999999999987776  333333 4588999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          455 VAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       455 ~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ++.+|++. .++.|..+|.+.+=+...
T Consensus       285 iavs~dd~-t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  285 IAVSPDDQ-TVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             EEecCCCc-eEEEecccceeeeehhhc
Confidence            99999998 588899999887764443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=6.6e-32  Score=237.70  Aligned_cols=289  Identities=16%  Similarity=0.272  Sum_probs=241.7

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeec--cccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ....++|..|+|+|++|++|+.++   .++||.|-.+.-+...-|.-.+  .+.....+|+.+       |.+...||+|
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDG---FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-------SRDsEMlAsG  281 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDG---FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-------SRDSEMLASG  281 (508)
T ss_pred             cccchhheeeCCCCceEeeccccc---eeeeehhccchhhhhhhhhhhcceeecccceEEEee-------cccHHHhhcc
Confidence            456789999999999999999998   8899999876543222222211  123344478766       8899999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.||.|+||.+.+++++..+                          -..|+..|+|++|+.++ ..++++|.|.++++.-
T Consensus       282 sqDGkIKvWri~tG~ClRrF--------------------------drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHG  334 (508)
T KOG0275|consen  282 SQDGKIKVWRIETGQCLRRF--------------------------DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHG  334 (508)
T ss_pred             CcCCcEEEEEEecchHHHHh--------------------------hhhhccCeeEEEEccCc-chhhcccccceEEEec
Confidence            99999999999988776542                          23799999999999994 5788999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe--ecCCeEEEEeCCCCCCEEEEEeC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      +.+|+++..|++|++.|+...|.++| +.+++++.||+|++|+..+..+...+..  ...+|.++..-|.++..++++..
T Consensus       335 lKSGK~LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr  413 (508)
T KOG0275|consen  335 LKSGKCLKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR  413 (508)
T ss_pred             cccchhHHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC
Confidence            99999999999999999999999999 8999999999999999999888764443  34568899998988889999999


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecC---CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG  450 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~  450 (502)
                      .++|++.++..          +.+.++...   .+...+...+|.| .++++.+.|+.++.|.+.+++  +..++..|..
T Consensus       414 sntv~imn~qG----------QvVrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~sG~--LE~tl~VhEk  480 (508)
T KOG0275|consen  414 SNTVYIMNMQG----------QVVRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLSGK--LERTLPVHEK  480 (508)
T ss_pred             CCeEEEEeccc----------eEEeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeecCc--eeeeeecccc
Confidence            99999999874          556666433   3456677789998 899999999999999999998  5667777888


Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       451 ~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      .|..++-+|..+ +||+-+.||.+++|.
T Consensus       481 dvIGl~HHPHqN-llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  481 DVIGLTHHPHQN-LLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccccCcccc-hhhhhcccchhhhcC
Confidence            899999999988 799999999999995

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=1.7e-30  Score=260.39  Aligned_cols=250  Identities=26%  Similarity=0.421  Sum_probs=212.7

Q ss_pred             CCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769          204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      .|+++|++|++++.++.|++|++.....                         .....+.+|...|.+++|+|+ +.+++
T Consensus       166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~~~v~~~~fs~d-~~~l~  219 (456)
T KOG0266|consen  166 DFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHTRGVSDVAFSPD-GSYLL  219 (456)
T ss_pred             EEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccccceeeeEECCC-CcEEE
Confidence            3489999999999999999999854221                         122234689999999999999 55999


Q ss_pred             EEecCCcEEEEEC-CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769          284 SASADKQVKIWDV-AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       284 sgs~Dg~v~vwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p  362 (502)
                      +|+.|++|+|||+ ..+.+++++.+|...|++++|+|.+ +++++|+.|++|+|||++++.....+..|...|++++|++
T Consensus       220 s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~  298 (456)
T KOG0266|consen  220 SGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP  298 (456)
T ss_pred             EecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence            9999999999999 5568999999999999999999999 9999999999999999999888888889999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCC--eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      ++. ++++++.||.|++||+.++..       .++..+..+...  ++++.|+|++ .+|++++.|+.+++||+....  
T Consensus       299 d~~-~l~s~s~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~--  367 (456)
T KOG0266|consen  299 DGN-LLVSASYDGTIRVWDLETGSK-------LCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK--  367 (456)
T ss_pred             CCC-EEEEcCCCccEEEEECCCCce-------eeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc--
Confidence            876 788889999999999998721       034556655554  9999999998 999999999999999999887  


Q ss_pred             EEEEecCCCC---CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          441 CIASRNPKAG---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       441 ~~~~~~~~~~---~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      +.....+|..   .+.+...++.+.+ +.+|+.|+.|++|++.++..+.+.-++.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~~~~~~l~~h~  421 (456)
T KOG0266|consen  368 SVGTYTGHSNLVRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSGGILQRLEGHS  421 (456)
T ss_pred             ceeeecccCCcceeEecccccCCCCe-EEEEeCCceEEEEeCCccchhhhhcCCC
Confidence            4555556655   4455566788884 9999999999999999988887777773

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.7e-30  Score=247.73  Aligned_cols=280  Identities=22%  Similarity=0.374  Sum_probs=230.8

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010769          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      .+=+.|+ ..+.||+|...      .||.|+...+   .+...++.. ...++++.|       +++|.+||+|..+|.|
T Consensus       180 ~nlldWs-s~n~laValg~------~vylW~~~s~---~v~~l~~~~-~~~vtSv~w-------s~~G~~LavG~~~g~v  241 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVALGQ------SVYLWSASSG---SVTELCSFG-EELVTSVKW-------SPDGSHLAVGTSDGTV  241 (484)
T ss_pred             hhHhhcc-cCCeEEEEecc------eEEEEecCCC---ceEEeEecC-CCceEEEEE-------CCCCCEEEEeecCCeE
Confidence            4556777 66788888655      7888888776   333222222 555678888       7899999999999999


Q ss_pred             EEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCC-cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe
Q 010769          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~  300 (502)
                      .|||......                           ...+.+ |...|-+|+|+.   ..+.+|+.++.|..+|++..+
T Consensus       242 ~iwD~~~~k~---------------------------~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~  291 (484)
T KOG0305|consen  242 QIWDVKEQKK---------------------------TRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQ  291 (484)
T ss_pred             EEEehhhccc---------------------------cccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecch
Confidence            9999864222                           222334 999999999994   489999999999999999887


Q ss_pred             eeEE-eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEE--eCCCeE
Q 010769          301 CNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS--LEDGTI  377 (502)
Q Consensus       301 ~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~--~~dg~i  377 (502)
                      .... +.+|...|..+.|++++ .+|++|+.|+.+.|||............|.+.|.+++|+|....+|++|  +.|++|
T Consensus       292 ~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i  370 (484)
T KOG0305|consen  292 HVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI  370 (484)
T ss_pred             hhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence            6555 88999999999999999 9999999999999999988888888889999999999999998899987  479999


Q ss_pred             EEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE-eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEE
Q 010769          378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      ++||+.++         ..+..+. ..+.|++|.|++....++.+. ..++.|.||++.+.+  .+..+.+|...|..++
T Consensus       371 ~fwn~~~g---------~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--~~~~l~gH~~RVl~la  438 (484)
T KOG0305|consen  371 KFWNTNTG---------ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--LVAELLGHTSRVLYLA  438 (484)
T ss_pred             EEEEcCCC---------cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--eeeeecCCcceeEEEE
Confidence            99999986         4444443 467899999999874555553 347789999999876  6888999999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          457 FSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       457 ~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ++|||.+ +++|+.|.++++|++-...
T Consensus       439 ~SPdg~~-i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  439 LSPDGET-IVTGAADETLRFWNLFDER  464 (484)
T ss_pred             ECCCCCE-EEEecccCcEEeccccCCC
Confidence            9999995 9999999999999997753

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.7e-30  Score=256.28  Aligned_cols=264  Identities=20%  Similarity=0.305  Sum_probs=197.6

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCC--------------------CceeeeC-Ccchh-----------h-hhhccc
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEV--------------------QPHVILG-GIDEE-----------K-KKKKSK  251 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~--------------------~~~~~l~-~~~~~-----------~-~~~~~~  251 (502)
                      ||++|+|||+||.|+.|+||.+-.....                    .|...-. .....           . ......
T Consensus       275 FS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~  354 (712)
T KOG0283|consen  275 FSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKA  354 (712)
T ss_pred             eCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcc
Confidence            3999999999999999999998541100                    0000000 00000           0 000000


Q ss_pred             cCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC
Q 010769          252 KGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD  331 (502)
Q Consensus       252 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  331 (502)
                      ..-..++...+.||.+.|++|+|+.+  ++|+|+|.|.||+||++....|++.|. |.+.|+|++|+|...++|++|+.|
T Consensus       355 f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD  431 (712)
T KOG0283|consen  355 FVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLD  431 (712)
T ss_pred             ccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccc
Confidence            00123445567899999999999988  589999999999999999999999997 999999999999998999999999


Q ss_pred             CcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC------CC
Q 010769          332 RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DK  405 (502)
Q Consensus       332 g~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h------~~  405 (502)
                      |.|+||++...+... -.....-|++++|.|+|. ..++|+.+|.+++|++...+.       ..-..+..|      .+
T Consensus       432 ~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~-------~~~~~I~~~~~Kk~~~~  502 (712)
T KOG0283|consen  432 GKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKL-------VSDFHIRLHNKKKKQGK  502 (712)
T ss_pred             cceEEeecCcCeeEe-ehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeE-------EEeeeEeeccCccccCc
Confidence            999999998765443 234557899999999976 899999999999999987632       111112112      23


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      .|+++.|.|..+..|++.+.|..|+|||.+...+.+.+.-......-...+|+.||.| |++++.|..|+||++..
T Consensus       503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH-IVSASEDSWVYIWKNDS  577 (712)
T ss_pred             eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE-EEEeecCceEEEEeCCC
Confidence            7999999998777788888999999999988775444332223344567899999997 77888999999999843

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.7e-31  Score=249.20  Aligned_cols=239  Identities=20%  Similarity=0.342  Sum_probs=214.8

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|...+++++-.+|.|.|||.++...+..+                           .-..-+|.+..|-+- .+++++|
T Consensus        22 HPtePw~la~LynG~V~IWnyetqtmVksf---------------------------eV~~~PvRa~kfiaR-knWiv~G   73 (794)
T KOG0276|consen   22 HPTEPWILAALYNGDVQIWNYETQTMVKSF---------------------------EVSEVPVRAAKFIAR-KNWIVTG   73 (794)
T ss_pred             CCCCceEEEeeecCeeEEEecccceeeeee---------------------------eecccchhhheeeec-cceEEEe
Confidence            788999999999999999999875544432                           234567888899887 7899999


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-ccceEeecCCeEEEEeCCCC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~v~~~p~~  364 (502)
                      +.|..|+||+.+++..++.|..|.+-|.|++.||.. .++++++.|-+|++||....-. ...+.+|..-|.+++|+|..
T Consensus        74 sDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD  152 (794)
T KOG0276|consen   74 SDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD  152 (794)
T ss_pred             cCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC
Confidence            999999999999999999999999999999999999 7899999999999999987643 44456888999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC-CCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-PNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      .+.|++++-|++|++|.+...         .+.+++.+|...|+|+.|-+-| .-+|+||+.|.+|+|||..+..  |+.
T Consensus       153 ~ntFaS~sLDrTVKVWslgs~---------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~--CV~  221 (794)
T KOG0276|consen  153 PNTFASASLDRTVKVWSLGSP---------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS--CVQ  221 (794)
T ss_pred             ccceeeeeccccEEEEEcCCC---------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH--HHH
Confidence            999999999999999999986         8899999999999999999854 2499999999999999999987  899


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      ++.+|...|..+.|+|.-+ ++++|+.||+++||+..+-++-
T Consensus       222 TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE  262 (794)
T KOG0276|consen  222 TLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLE  262 (794)
T ss_pred             HhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehh
Confidence            9999999999999999999 7999999999999999886654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1e-30  Score=257.16  Aligned_cols=254  Identities=19%  Similarity=0.356  Sum_probs=222.3

Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      ++|+|...+++++--.|.|++||..-                           ......+..|.++|..+.|+|. +.++
T Consensus        15 lsFHP~rPwILtslHsG~IQlWDYRM---------------------------~tli~rFdeHdGpVRgv~FH~~-qplF   66 (1202)
T KOG0292|consen   15 LSFHPKRPWILTSLHSGVIQLWDYRM---------------------------GTLIDRFDEHDGPVRGVDFHPT-QPLF   66 (1202)
T ss_pred             eecCCCCCEEEEeecCceeeeehhhh---------------------------hhHHhhhhccCCccceeeecCC-CCeE
Confidence            34589999999999999999999864                           3444567789999999999999 6699


Q ss_pred             EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769          283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p  362 (502)
                      +||+.|..|+||+..+.+|+.++.+|-+.|..+.||+.- ..++++|.|.+|+||+..+.+++....+|...|.|.+|+|
T Consensus        67 VSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp  145 (1202)
T KOG0292|consen   67 VSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP  145 (1202)
T ss_pred             EecCCccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence            999999999999999999999999999999999999998 7899999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCC--------------------CCccEEEecCCCCeeEEEEcCCCCCEEEE
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS--------------------QQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      ... ++++++-|.+|++||+.........+.                    ....+.+.+|...|+-++|+|.- -++++
T Consensus       146 tED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVS  223 (1202)
T KOG0292|consen  146 TED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVS  223 (1202)
T ss_pred             ccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEe
Confidence            754 899999999999999865432111100                    11234567999999999999987 79999


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      |+.|..|++|.+...+...+-+..+|.+.|.++-|+|... ++.+.|.|++|+|||+...+.+...
T Consensus       224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccccceeee
Confidence            9999999999999887767778889999999999999888 7999999999999999988877554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.1e-30  Score=252.88  Aligned_cols=288  Identities=16%  Similarity=0.284  Sum_probs=235.9

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      ....|..++|||....|+++--.+   .+++|.|.-...  ..-+-.|+.++.    .+.       |+|.+.++++|+.
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG---~IQlWDYRM~tl--i~rFdeHdGpVR----gv~-------FH~~qplFVSGGD   71 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSG---VIQLWDYRMGTL--IDRFDEHDGPVR----GVD-------FHPTQPLFVSGGD   71 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCc---eeeeehhhhhhH--HhhhhccCCccc----eee-------ecCCCCeEEecCC
Confidence            456789999999999999998887   789999976542  122345666553    333       3899999999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      |-.|+||++..                           .+....+.||-+-|..+.|++. -.+++|+|.|.+|+||+..
T Consensus        72 DykIkVWnYk~---------------------------rrclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwq  123 (1202)
T KOG0292|consen   72 DYKIKVWNYKT---------------------------RRCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQ  123 (1202)
T ss_pred             ccEEEEEeccc---------------------------ceehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEecc
Confidence            99999999975                           4445567799999999999999 4599999999999999999


Q ss_pred             CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc-----------------------------cce
Q 010769          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-----------------------------GFK  348 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------------------------~~~  348 (502)
                      +++++..+.+|+-.|.|.+|+|.. .+++++|.|.+|++||+..-+..                             ...
T Consensus       124 sr~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL  202 (1202)
T KOG0292|consen  124 SRKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL  202 (1202)
T ss_pred             CCceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence            999999999999999999999988 89999999999999998631110                             112


Q ss_pred             EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769          349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       349 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      .+|...|+-++|+|.-+ ++++|+.|..|++|.+...+.       --+-+..+|...|+++-|+|.. .++++.|.|++
T Consensus       203 EGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDks  273 (1202)
T KOG0292|consen  203 EGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKS  273 (1202)
T ss_pred             cccccccceEEecCCcc-eEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecCcc-ceeEecCCCcc
Confidence            35667899999999877 899999999999999876421       2345567999999999999987 89999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      |+|||+...+  .+.++....+..+.++.+|..+ |+|+ +.|+.+.||.+....
T Consensus       274 irVwDm~kRt--~v~tfrrendRFW~laahP~lN-LfAA-gHDsGm~VFkleREr  324 (1202)
T KOG0292|consen  274 IRVWDMTKRT--SVQTFRRENDRFWILAAHPELN-LFAA-GHDSGMIVFKLERER  324 (1202)
T ss_pred             EEEEeccccc--ceeeeeccCCeEEEEEecCCcc-eeee-ecCCceEEEEEcccC
Confidence            9999999877  5666665668899999999998 5664 566667777776433

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.6e-29  Score=249.81  Aligned_cols=255  Identities=18%  Similarity=0.206  Sum_probs=192.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++++..+++++.+.....|+...+..+.+....|              +.......+.+|.+.|++++|+|..+++|++|
T Consensus        29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G--------------~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg   94 (493)
T PTZ00421         29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG--------------KLASNPPILLGQEGPIIDVAFNPFDPQKLFTA   94 (493)
T ss_pred             cCCCCCcEeECCceEEEEEecCCceEEeeccccc--------------cCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence            4566666777777777788765432222211111              11111234568999999999999436799999


Q ss_pred             ecCCcEEEEECCCC-------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEE
Q 010769          286 SADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       286 s~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      +.|++|++||+.++       .++..+.+|...|.+++|+|.+.++|++|+.|++|++||++++........|...|.++
T Consensus        95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl  174 (493)
T PTZ00421         95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL  174 (493)
T ss_pred             eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence            99999999999765       35678899999999999999876799999999999999999887665555688899999


Q ss_pred             EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCC-eeEEEEcCCCCCEEEEEe----CCCcEEEEE
Q 010769          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCTISYNPLVPNLLATGS----TDKMVKLWD  433 (502)
Q Consensus       359 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~l~t~s----~dg~i~vwd  433 (502)
                      +|+|++. +|++++.||.|++||++++         ..+..+.+|.+. +..+.|.+.+ ..|++++    .|+.|++||
T Consensus       175 a~spdG~-lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWD  243 (493)
T PTZ00421        175 EWNLDGS-LLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWD  243 (493)
T ss_pred             EEECCCC-EEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEe
Confidence            9999875 8999999999999999986         667788888765 4567889887 5555543    478999999


Q ss_pred             CCCCCeeEEEEec-CCCCCEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCccccc
Q 010769          434 LSNNQPSCIASRN-PKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       434 ~~~~~~~~~~~~~-~~~~~v~~~~~spd~~~llasg~-~dg~i~vwd~~~~~~~~~  487 (502)
                      +++... .+.... .+...+....|++++.+ |++|+ .|+.|++||+.++..+..
T Consensus       244 lr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~-L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        244 TRKMAS-PYSTVDLDQSSALFIPFFDEDTNL-LYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             CCCCCC-ceeEeccCCCCceEEEEEcCCCCE-EEEEEeCCCeEEEEEeeCCceEEE
Confidence            987642 222222 23345667789999985 55555 699999999998886644

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=4.8e-29  Score=268.15  Aligned_cols=253  Identities=20%  Similarity=0.318  Sum_probs=205.1

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..+++|       +|+|++||+|+.|+.|+||++........                   ........+ .+...|.++
T Consensus       486 V~~i~f-------s~dg~~latgg~D~~I~iwd~~~~~~~~~-------------------~~~~~~~~~-~~~~~v~~l  538 (793)
T PLN00181        486 VCAIGF-------DRDGEFFATAGVNKKIKIFECESIIKDGR-------------------DIHYPVVEL-ASRSKLSGI  538 (793)
T ss_pred             EEEEEE-------CCCCCEEEEEeCCCEEEEEECCccccccc-------------------ccccceEEe-cccCceeeE
Confidence            356666       79999999999999999999853210000                   000011112 234679999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      +|++..+.+|++++.||+|+|||+.+++.+..+.+|...|++++|+|.++.+|++|+.||+|++||+++...... ....
T Consensus       539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~-~~~~  617 (793)
T PLN00181        539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT-IKTK  617 (793)
T ss_pred             EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE-EecC
Confidence            999876779999999999999999999999999999999999999985448999999999999999998766543 3345


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      ..+.++.|++..+.++++|+.||.|++||+++.        ..++..+.+|...|+++.|.+ + .+|++++.|++|++|
T Consensus       618 ~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~--------~~~~~~~~~h~~~V~~v~f~~-~-~~lvs~s~D~~ikiW  687 (793)
T PLN00181        618 ANICCVQFPSESGRSLAFGSADHKVYYYDLRNP--------KLPLCTMIGHSKTVSYVRFVD-S-STLVSSSTDNTLKLW  687 (793)
T ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--------CccceEecCCCCCEEEEEEeC-C-CEEEEEECCCEEEEE
Confidence            679999997665668999999999999999876        245677889999999999974 4 789999999999999


Q ss_pred             ECCCCC----eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          433 DLSNNQ----PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       433 d~~~~~----~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      |++...    ...+..+.+|...+.+++|+|++. +|++|+.|+.|++|+......
T Consensus       688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~  742 (793)
T PLN00181        688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMP  742 (793)
T ss_pred             eCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCc
Confidence            997531    135677889999999999999998 599999999999999876543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=236.12  Aligned_cols=303  Identities=17%  Similarity=0.230  Sum_probs=226.4

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.++.+.|.|-.+++|+.+.   .++.|.|.....   .+. +...+.|.-...+.-    +.||+.|..|++.
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy---~v~~wDf~gMda---s~~-~fr~l~P~E~h~i~s----l~ys~Tg~~iLvv  232 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDY---TVKFWDFQGMDA---SMR-SFRQLQPCETHQINS----LQYSVTGDQILVV  232 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccc---eEEEEecccccc---cch-hhhccCcccccccce----eeecCCCCeEEEE
Confidence            34778899999999999999999986   678888876654   221 122222222222221    2237889888888


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +....++|+|-+....++.               .+......-....+||...++|.+|+|.....+++++.||++++|+
T Consensus       233 sg~aqakl~DRdG~~~~e~---------------~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd  297 (641)
T KOG0772|consen  233 SGSAQAKLLDRDGFEIVEF---------------SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD  297 (641)
T ss_pred             ecCcceeEEccCCceeeee---------------eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence            8889999999875433321               1222334445567799999999999999889999999999999999


Q ss_pred             CCCCee-eEEe-----ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc---ceEeecC--CeEEEEeCCCC
Q 010769          296 VAAGKC-NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAA--DVESLAWDPHA  364 (502)
Q Consensus       296 ~~~~~~-~~~~-----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~--~v~~v~~~p~~  364 (502)
                      +...+. ...|     .+..-++++++|++++ .+|++|+.||.|.+|+.+......   ....|..  .|+||.|+++|
T Consensus       298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg  376 (641)
T KOG0772|consen  298 VNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG  376 (641)
T ss_pred             cCCchhheeEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence            986542 2233     2344578999999999 789999999999999986543322   2234555  89999999987


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC--CCCeeEEEEcCCCCCEEEEEeC------CCcEEEEECCC
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGST------DKMVKLWDLSN  436 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~------dg~i~vwd~~~  436 (502)
                      . +|++-+.|+++++||+|+.        .+++....+-  ..+-+.++|||+. .+|+||+.      .|++.+||..+
T Consensus       377 ~-~LlSRg~D~tLKvWDLrq~--------kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t  446 (641)
T KOG0772|consen  377 N-YLLSRGFDDTLKVWDLRQF--------KKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMT  446 (641)
T ss_pred             c-hhhhccCCCceeeeecccc--------ccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccc
Confidence            6 8999999999999999998        3566555443  3456789999997 89999864      46799999888


Q ss_pred             CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      ..  .+..+.-....|..+.|+|.-+. |.+|+.||+++||=
T Consensus       447 ~d--~v~ki~i~~aSvv~~~WhpkLNQ-i~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  447 LD--TVYKIDISTASVVRCLWHPKLNQ-IFAGSGDGTAHVYY  485 (641)
T ss_pred             ee--eEEEecCCCceEEEEeecchhhh-eeeecCCCceEEEE
Confidence            76  56666666788999999999886 55677788888753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.8e-29  Score=232.36  Aligned_cols=267  Identities=21%  Similarity=0.372  Sum_probs=214.5

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCC---------ceeeeeccccCCCcceeeeecCCCCCCC
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP---------NLYVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~---------~l~~~~~~~~~~~~~~~~w~~~~~~~s~  207 (502)
                      .|+++|+.+.+.|+...|+++...+  +.+.||.|........         .|.+|+.-   +  +.+.|..      .
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~--~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e---g--~glsWn~------~  188 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSS--GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE---G--YGLSWNR------Q  188 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCC--CCEEEEEeccCCCcccccccCCCceEEEeeccc---c--ccccccc------c
Confidence            3889999999999999888876665  2456666654443221         45566651   2  3466631      2


Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ..-+|++|+.|+.|++||+......                    .+....+..+.+|.+.|..++|++....+|++++.
T Consensus       189 ~~g~Lls~~~d~~i~lwdi~~~~~~--------------------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d  248 (422)
T KOG0264|consen  189 QEGTLLSGSDDHTICLWDINAESKE--------------------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD  248 (422)
T ss_pred             cceeEeeccCCCcEEEEeccccccC--------------------CccccceEEeecCCcceehhhccccchhhheeecC
Confidence            4567999999999999999754321                    12244555677999999999999998999999999


Q ss_pred             CCcEEEEECC--CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc-cceEeecCCeEEEEeCCCC
Q 010769          288 DKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       288 Dg~v~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~v~~~p~~  364 (502)
                      |+.+.|||++  +.++.+...+|++.|.|++|+|.+..+|++|+.|++|++||+|..... ..+..|...|.+|.|+|+.
T Consensus       249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~  328 (422)
T KOG0264|consen  249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN  328 (422)
T ss_pred             CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence            9999999999  567777888999999999999999899999999999999999986654 3345788999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCC-----CCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDP-----DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      ..+|++++.|+.+.+||+.......     ......+++.-.+|...|+.+.|+|+.+..|++.+.|+.+.||.+..
T Consensus       329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            9999999999999999997653321     11224566888899999999999999999999999999999999864

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.9e-28  Score=205.66  Aligned_cols=292  Identities=21%  Similarity=0.310  Sum_probs=229.8

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCC---------CCCcee----eeeccccCCCcceeeeecCCCC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG---------GDPNLY----VHHHIIIPAFPLCMAWLDCPLK  204 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~---------~~~~l~----~~~~~~~~~~~~~~~w~~~~~~  204 (502)
                      +...|.+++|+|.|.+.++|++..   +++|.-|..-..         ..+.+.    .||...    .+|++|      
T Consensus        31 dsqairav~fhp~g~lyavgsnsk---t~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgs----iyc~~w------   97 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSK---TFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGS----IYCTAW------   97 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCc---eEEEEccccccCcccccccccCCCeEEeeeccccCcc----EEEEEe------
Confidence            456899999999999999999886   678877754332         111222    344333    489999      


Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC---CCcE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNI  281 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~~  281 (502)
                       ||.|.+||+|+.|.+|++.-++...+..                      ......+.-|.+.|..++|..+   ++.+
T Consensus        98 -s~~geliatgsndk~ik~l~fn~dt~~~----------------------~g~dle~nmhdgtirdl~fld~~~s~~~i  154 (350)
T KOG0641|consen   98 -SPCGELIATGSNDKTIKVLPFNADTCNA----------------------TGHDLEFNMHDGTIRDLAFLDDPESGGAI  154 (350)
T ss_pred             -cCccCeEEecCCCceEEEEecccccccc----------------------cCcceeeeecCCceeeeEEecCCCcCceE
Confidence             7899999999999999998765322211                      1122234569999999999643   4557


Q ss_pred             EEEEec-CCcEEEEECCCCeeeEEeccCCCCeEEE-EEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe-------ec
Q 010769          282 LASASA-DKQVKIWDVAAGKCNLTLEHHTDKVQAV-AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-------VA  352 (502)
Q Consensus       282 l~sgs~-Dg~v~vwd~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~  352 (502)
                      |++++. |..|.+-|..+|+..+.+.+|++.|.++ .|+  + -.+++|+.|.+|++||+|-..++...-.       ..
T Consensus       155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gles  231 (350)
T KOG0641|consen  155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLES  231 (350)
T ss_pred             EEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--C-cEEEccCCCceEEEEeeeccceeeeccCcccCCCccc
Confidence            887764 6778888999999999999999999987 454  4 7899999999999999998766543221       13


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      +.|.+++..|.|. ++++|..|....+||+|.+         ++++.+..|...|.|+.|+|.. .+|+||+.|..|++-
T Consensus       232 savaav~vdpsgr-ll~sg~~dssc~lydirg~---------r~iq~f~phsadir~vrfsp~a-~yllt~syd~~iklt  300 (350)
T KOG0641|consen  232 SAVAAVAVDPSGR-LLASGHADSSCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLT  300 (350)
T ss_pred             ceeEEEEECCCcc-eeeeccCCCceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEe
Confidence            5689999999876 8999999999999999987         8899999999999999999976 999999999999999


Q ss_pred             ECCCCC--eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          433 DLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       433 d~~~~~--~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      |+...-  ...+.....|...+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus       301 dlqgdla~el~~~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  301 DLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN  349 (350)
T ss_pred             ecccchhhcCceEEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence            987531  223455567888899999999875 48888999999999764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.2e-29  Score=214.21  Aligned_cols=239  Identities=26%  Similarity=0.444  Sum_probs=200.6

Q ss_pred             ceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          194 LCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..++|       +|. |..||+|+.|..||||++..++......+|                       -.+|+..|.++
T Consensus        18 W~~aw-------hp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl-----------------------d~~hkrsVRsv   67 (312)
T KOG0645|consen   18 WSVAW-------HPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL-----------------------DDGHKRSVRSV   67 (312)
T ss_pred             EEEEe-------ccCCceEEEeecCCceEEEEecCCCCcEEEEEec-----------------------cccchheeeee
Confidence            45666       566 889999999999999998754443322222                       23799999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCC--eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC---Cccc
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST---HSGF  347 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~  347 (502)
                      +|+|.+ ++||+||.|.++.||.-..+  +++.++.+|...|.|++|+++| ++|++++.|+.|-||.+....   +...
T Consensus        68 Awsp~g-~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aV  145 (312)
T KOG0645|consen   68 AWSPHG-RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAV  145 (312)
T ss_pred             eecCCC-cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence            999995 59999999999999986644  6899999999999999999999 999999999999999998543   3455


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      +..|...|..+.|+|... +|++++.|.+|++|.-.....      ..++.++.+|...|.+++|+|.| ..|++++.|+
T Consensus       146 L~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~ddd------W~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~  217 (312)
T KOG0645|consen  146 LQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDD------WECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDG  217 (312)
T ss_pred             eccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCC------eeEEEEecCccceEEEEEecCCC-ceEEEecCCc
Confidence            678899999999999754 899999999999998763211      47889999999999999999998 8999999999


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      +|+||-+...-      ...|...+..+.|. ++  +||+++.|+.|+||.-..
T Consensus       218 tv~Iw~~~~~~------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  218 TVSIWRLYTDL------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESD  262 (312)
T ss_pred             ceEeeeeccCc------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecC
Confidence            99999865321      23466889999999 55  699999999999998774

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.6e-28  Score=246.05  Aligned_cols=229  Identities=22%  Similarity=0.305  Sum_probs=180.7

Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      |+..+.|++|++..                           ......+.+|...|++++|+|..+++|+||+.||+|+||
T Consensus        50 GG~~gvI~L~~~~r---------------------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIW  102 (568)
T PTZ00420         50 GGLIGAIRLENQMR---------------------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVW  102 (568)
T ss_pred             CCceeEEEeeecCC---------------------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Confidence            56678888998753                           122335568999999999999766799999999999999


Q ss_pred             ECCCCe--------eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC
Q 010769          295 DVAAGK--------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       295 d~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  366 (502)
                      |+.++.        ++..+.+|...|.+++|+|.+..+|++++.|++|++||++++.... ...+...|.+++|+|++. 
T Consensus       103 Di~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-~i~~~~~V~SlswspdG~-  180 (568)
T PTZ00420        103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF-QINMPKKLSSLKWNIKGN-  180 (568)
T ss_pred             ECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-EEecCCcEEEEEECCCCC-
Confidence            997642        3456788999999999999986677899999999999999877543 334667899999999876 


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEE-----EEcCCCCCEEEEEeCCC----cEEEEECCC-
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-----SYNPLVPNLLATGSTDK----MVKLWDLSN-  436 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-----~~sp~~~~~l~t~s~dg----~i~vwd~~~-  436 (502)
                      +|++++.|+.|++||++++         ..+..+.+|.+.+.+.     .|++++ .+|++++.++    +|+|||++. 
T Consensus       181 lLat~s~D~~IrIwD~Rsg---------~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        181 LLSGTCVGKHMHIIDPRKQ---------EIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNT  250 (568)
T ss_pred             EEEEEecCCEEEEEECCCC---------cEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCC
Confidence            7888999999999999987         6677888998765433     345776 7888877764    799999995 


Q ss_pred             CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      .++.....+..+.+.+......+++. ++++|+.|++|++|++..+.
T Consensus       251 ~~pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        251 TSALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             CCceEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCc
Confidence            45555555555556555555555666 68899999999999998764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1.9e-28  Score=228.90  Aligned_cols=311  Identities=15%  Similarity=0.227  Sum_probs=248.0

Q ss_pred             CCCCCCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCC
Q 010769          124 SNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL  203 (502)
Q Consensus       124 ~~~~d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~  203 (502)
                      .+-++|.....-.+|...++-..|+|+|-++|+|-..+   .++||.....+    .+..+.-.++.+....+.|     
T Consensus        44 r~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG---~vRIWdtt~~~----hiLKnef~v~aG~I~Di~W-----  111 (603)
T KOG0318|consen   44 RNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSG---KVRIWDTTQKE----HILKNEFQVLAGPIKDISW-----  111 (603)
T ss_pred             EECCCccceeeeccccceeEEEEeCCCceEEeecCCcC---cEEEEeccCcc----eeeeeeeeeccccccccee-----
Confidence            33344444433467999999999999999999998887   45666655433    4555555566677777888     


Q ss_pred             CCCCCCCEEEEecCC----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC
Q 010769          204 KDREKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       204 ~~s~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                        +.+++.|++.+..    |.+.+||-  +..+.                           .+.||...|+++.|-|..+
T Consensus       112 --d~ds~RI~avGEGrerfg~~F~~DS--G~SvG---------------------------ei~GhSr~ins~~~KpsRP  160 (603)
T KOG0318|consen  112 --DFDSKRIAAVGEGRERFGHVFLWDS--GNSVG---------------------------EITGHSRRINSVDFKPSRP  160 (603)
T ss_pred             --CCCCcEEEEEecCccceeEEEEecC--CCccc---------------------------eeeccceeEeeeeccCCCc
Confidence              7788877766543    45666664  22222                           3458999999999999977


Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE---eecCCeE
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAADVE  356 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~  356 (502)
                      ..+++||.|++|.+|.-.--+...+++.|+..|+|+.|+|+| .+|++++.||++.+||-.++.....+.   .|.+.|.
T Consensus       161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf  239 (603)
T KOG0318|consen  161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF  239 (603)
T ss_pred             eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE
Confidence            889999999999999977677788889999999999999998 999999999999999999988776555   7899999


Q ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCC----------------------------------CCCCCCCccEEEec
Q 010769          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD----------------------------------PDSTSQQSSFTLHA  402 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----------------------------------~~~~~~~~~~~~~~  402 (502)
                      +++|+|++. .|++++.|.++++||+.+....                                  .++....++..+.+
T Consensus       240 alsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G  318 (603)
T KOG0318|consen  240 ALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG  318 (603)
T ss_pred             EEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc
Confidence            999999876 7999999999999999876430                                  01111246677889


Q ss_pred             CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      |...|+++..+|++ .+|++|+.||.|.-|+..++.. ....-.+|...|.+++-+..+.  |.+.|.|.+|++.++..+
T Consensus       319 HnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~-~~~~g~~h~nqI~~~~~~~~~~--~~t~g~Dd~l~~~~~~~~  394 (603)
T KOG0318|consen  319 HNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTS-DRLAGKGHTNQIKGMAASESGE--LFTIGWDDTLRVISLKDN  394 (603)
T ss_pred             cccceeEEEEcCCC-CEEEeeccCceEEEEecCCccc-cccccccccceEEEEeecCCCc--EEEEecCCeEEEEecccC
Confidence            99999999999998 9999999999999999998863 2233367899999999988776  677889999999988654


Q ss_pred             c
Q 010769          483 A  483 (502)
Q Consensus       483 ~  483 (502)
                      .
T Consensus       395 ~  395 (603)
T KOG0318|consen  395 G  395 (603)
T ss_pred             c
Confidence            4

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.6e-30  Score=214.82  Aligned_cols=235  Identities=23%  Similarity=0.392  Sum_probs=197.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +-+|+|.++++.|.+|++|+.-.                           ......+.+|...|..++.+.+ ...|++|
T Consensus        26 N~dGnY~ltcGsdrtvrLWNp~r---------------------------g~liktYsghG~EVlD~~~s~D-nskf~s~   77 (307)
T KOG0316|consen   26 NVDGNYCLTCGSDRTVRLWNPLR---------------------------GALIKTYSGHGHEVLDAALSSD-NSKFASC   77 (307)
T ss_pred             ccCCCEEEEcCCCceEEeecccc---------------------------cceeeeecCCCceeeecccccc-ccccccC
Confidence            67899999999999999999754                           3444567799999999999998 5589999


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC--ccceEeecCCeEEEEeCCC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~v~~~p~  363 (502)
                      +.|..|.+||+.+|+.++.|.+|.+.|+.++|+... ..+++|+.|.++++||.|+...  ++.+-.....|.++..+. 
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-  155 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-  155 (307)
T ss_pred             CCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-
Confidence            999999999999999999999999999999999988 8999999999999999997654  333445567789998874 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                        +.+++|+.||+++.||+|.+.         .  ...-...+|++++|++++ +++++++.|+++++.|-.+++  ++.
T Consensus       156 --heIvaGS~DGtvRtydiR~G~---------l--~sDy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGk--lL~  219 (307)
T KOG0316|consen  156 --HEIVAGSVDGTVRTYDIRKGT---------L--SSDYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGK--LLK  219 (307)
T ss_pred             --cEEEeeccCCcEEEEEeecce---------e--ehhhcCCcceeEEecCCC-CEEEEeeccceeeecccchhH--HHH
Confidence              479999999999999999872         1  122345789999999998 999999999999999999998  566


Q ss_pred             EecCCCCCEE--EEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          444 SRNPKAGAVF--SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       444 ~~~~~~~~v~--~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      .+.+|...=.  .++++.... .+++|+.||.|++||+.....+..
T Consensus       220 sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~~sk  264 (307)
T KOG0316|consen  220 SYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQISK  264 (307)
T ss_pred             Hhcccccceeeeeeeecccce-eEEeccCCceEEEEEeccceeeee
Confidence            6777765433  345555555 589999999999999988877654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.4e-29  Score=242.03  Aligned_cols=287  Identities=18%  Similarity=0.304  Sum_probs=241.0

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|..+|..++++.+..++++|..+    .++||..+....   ...     +...+.+|..+       -|.++++++|
T Consensus       370 ~GHR~dVRsl~vS~d~~~~~Sga~~----SikiWn~~t~kc---iRT-----i~~~y~l~~~F-------vpgd~~Iv~G  430 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSDSILLASGAGE----SIKIWNRDTLKC---IRT-----ITCGYILASKF-------VPGDRYIVLG  430 (888)
T ss_pred             ccchhheeEEEeecCceeeeecCCC----cEEEEEccCcce---eEE-----eccccEEEEEe-------cCCCceEEEe
Confidence            5689999999999999999998766    478888775543   111     11224466655       4789999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +..|.+.|||+.+...+.                           ....|.++|++++.+|+ +..+++||.|.+|++||
T Consensus       431 ~k~Gel~vfdlaS~~l~E---------------------------ti~AHdgaIWsi~~~pD-~~g~vT~saDktVkfWd  482 (888)
T KOG0306|consen  431 TKNGELQVFDLASASLVE---------------------------TIRAHDGAIWSISLSPD-NKGFVTGSADKTVKFWD  482 (888)
T ss_pred             ccCCceEEEEeehhhhhh---------------------------hhhccccceeeeeecCC-CCceEEecCCcEEEEEe
Confidence            999999999998644433                           23479999999999999 55899999999999999


Q ss_pred             CCC-----C--eeeEEec-----cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769          296 VAA-----G--KCNLTLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       296 ~~~-----~--~~~~~~~-----~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  363 (502)
                      +.-     +  +.+..+.     .-...|.|+.++|++ .+|+++-.|.+|++|-+.+-+......+|.-+|.|+..+|+
T Consensus       483 f~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D  561 (888)
T KOG0306|consen  483 FKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD  561 (888)
T ss_pred             EEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC
Confidence            741     1  1111111     135789999999999 99999999999999999998888888999999999999998


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      +. ++++|+.|.+|++|-+.-+         .+-.++.+|...|.++.|.|.. .++.|+|.|+.|+-||-....  ++.
T Consensus       562 Sk-livTgSADKnVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe--~iq  628 (888)
T KOG0306|consen  562 SK-LIVTGSADKNVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE--EIQ  628 (888)
T ss_pred             cC-eEEeccCCCceEEeccccc---------hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhh--hhe
Confidence            76 9999999999999999876         7788899999999999999976 899999999999999987766  788


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      .+.+|...|+|++.+|+|.| +++++.|.+|++|.......
T Consensus       629 ~L~~H~~ev~cLav~~~G~~-vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  629 KLDGHHSEVWCLAVSPNGSF-VVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             eeccchheeeeeEEcCCCCe-EEeccCCceeEeeeccCcce
Confidence            99999999999999999996 88999999999999765433

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=4.3e-30  Score=237.76  Aligned_cols=253  Identities=18%  Similarity=0.266  Sum_probs=207.8

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .++.|.      ...+.+|++|++|+.|+||++...                          ......+.+|..+|..++
T Consensus       218 sai~~f------p~~~hLlLS~gmD~~vklW~vy~~--------------------------~~~lrtf~gH~k~Vrd~~  265 (503)
T KOG0282|consen  218 SAIQWF------PKKGHLLLSGGMDGLVKLWNVYDD--------------------------RRCLRTFKGHRKPVRDAS  265 (503)
T ss_pred             chhhhc------cceeeEEEecCCCceEEEEEEecC--------------------------cceehhhhcchhhhhhhh
Confidence            566664      227999999999999999998631                          344556779999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  353 (502)
                      |++. +..++|+|.|+.|++||+++|+++..|. ....++|+.|+|++.+.|++|+.|+.|+.||+|+++.+...-.|-+
T Consensus       266 ~s~~-g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg  343 (503)
T KOG0282|consen  266 FNNC-GTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG  343 (503)
T ss_pred             cccc-CCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence            9999 5588899999999999999999999986 3567899999999999999999999999999999998877778889


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .|..+.|-+.+. .|++++.++++++|+.+..-        ........+.....++..+|++ .++++=+.|+.|.+|.
T Consensus       344 ~i~~i~F~~~g~-rFissSDdks~riWe~~~~v--------~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs  413 (503)
T KOG0282|consen  344 AILDITFVDEGR-RFISSSDDKSVRIWENRIPV--------PIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFS  413 (503)
T ss_pred             heeeeEEccCCc-eEeeeccCccEEEEEcCCCc--------cchhhcchhhccCcceecCCCC-CeehhhccCceEEEEe
Confidence            999999999876 79999999999999999762        2222223334456788899998 8999999999999998


Q ss_pred             CCCCCe-eEEEEecCC--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          434 LSNNQP-SCIASRNPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       434 ~~~~~~-~~~~~~~~~--~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +...-. .....+.+|  .|.-..+.|||||++ |++|..+|.+.+||.++.+.+...-.+
T Consensus       414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTTKLVSKLKAH  473 (503)
T ss_pred             cccccccCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhhhhhhccccC
Confidence            754321 112234444  355678999999995 999999999999999998888766555

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.4e-29  Score=233.06  Aligned_cols=291  Identities=23%  Similarity=0.317  Sum_probs=221.3

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC---CCc--eeeeecccc-------CCCcceeeeecCCCC
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG---DPN--LYVHHHIII-------PAFPLCMAWLDCPLK  204 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~---~~~--l~~~~~~~~-------~~~~~~~~w~~~~~~  204 (502)
                      .|.-.+.++.++|++.+++.++.++   +|.-|....+...   .+.  +...|-.++       ..-.+|++.      
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g---~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av------  210 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDG---TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV------  210 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCc---ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE------
Confidence            4788999999999999999999887   3333433332210   000  000011110       011244443      


Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                       |++|+|||+|+.|..|.||+.++.+.+                           ..+.+|.+.|.+++|-.. .+.|++
T Consensus       211 -S~Dgkylatgg~d~~v~Iw~~~t~ehv---------------------------~~~~ghr~~V~~L~fr~g-t~~lys  261 (479)
T KOG0299|consen  211 -SSDGKYLATGGRDRHVQIWDCDTLEHV---------------------------KVFKGHRGAVSSLAFRKG-TSELYS  261 (479)
T ss_pred             -cCCCcEEEecCCCceEEEecCcccchh---------------------------hcccccccceeeeeeecC-ccceee
Confidence             899999999999999999999874433                           346699999999999876 678999


Q ss_pred             EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~  364 (502)
                      +|.|++|++|+++....+.++.+|.+.|.+|.-...+ +.+.+|+.|+++++|++.... ...+.++.+.+.|++|-.+ 
T Consensus       262 ~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~-  338 (479)
T KOG0299|consen  262 ASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIND-  338 (479)
T ss_pred             eecCCceEEEehhHhHHHHHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecc-
Confidence            9999999999999999999999999999999988887 777777899999999994433 3335677889999999864 


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-c-----------CCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-A-----------HDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~-----------h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                       ..|++|+.+|.|.+|++.+.         +++++.. +           +...|++++..|.. .++|+|+.+|.|++|
T Consensus       339 -~HfvsGSdnG~IaLWs~~KK---------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW  407 (479)
T KOG0299|consen  339 -EHFVSGSDNGSIALWSLLKK---------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLW  407 (479)
T ss_pred             -cceeeccCCceEEEeeeccc---------CceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEE
Confidence             36999999999999999886         3443332 1           23489999999976 999999999999999


Q ss_pred             ECCCC--CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          433 DLSNN--QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       433 d~~~~--~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      -+..+  ....+..+. -.+.|++++|+++|.++++..|....+--|-..
T Consensus       408 ~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  408 KIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             EecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence            99887  223344444 568999999999999878777777666656543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=5.2e-28  Score=228.40  Aligned_cols=247  Identities=32%  Similarity=0.514  Sum_probs=208.0

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|+.|       +|++++|++|+.+|.|++|++....                           ....+..|...+.++.
T Consensus        13 ~~~~~-------~~~~~~l~~~~~~g~i~i~~~~~~~---------------------------~~~~~~~~~~~i~~~~   58 (289)
T cd00200          13 TCVAF-------SPDGKLLATGSGDGTIKVWDLETGE---------------------------LLRTLKGHTGPVRDVA   58 (289)
T ss_pred             EEEEE-------cCCCCEEEEeecCcEEEEEEeeCCC---------------------------cEEEEecCCcceeEEE
Confidence            67777       7889999999999999999987432                           1223446888899999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  353 (502)
                      |+|+ +.+|++++.+|.|++|++.+++.+..+..|...+.++.|++++ .++++++.+|.|++|++++.+.......+..
T Consensus        59 ~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  136 (289)
T cd00200          59 ASAD-GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTD  136 (289)
T ss_pred             ECCC-CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCC
Confidence            9999 4689999999999999999988888898899999999999996 7888888899999999997666554556778


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .+.+++|+|++ .++++++.+|.|++||++..         .....+..|...+.++.|+|++ ..+++++.++.|++||
T Consensus       137 ~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d  205 (289)
T cd00200         137 WVNSVAFSPDG-TFVASSSQDGTIKLWDLRTG---------KCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWD  205 (289)
T ss_pred             cEEEEEEcCcC-CEEEEEcCCCcEEEEEcccc---------ccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEE
Confidence            89999999974 46777777999999999875         5677777899999999999987 7888888899999999


Q ss_pred             CCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769          434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      ++..+  .+..+..|...+.++.|+|++. ++++++.+|.|++|++.++..+.....
T Consensus       206 ~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~~  259 (289)
T cd00200         206 LSTGK--CLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLSG  259 (289)
T ss_pred             CCCCc--eecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCceeEEEccc
Confidence            99876  4555557788999999999976 577777799999999998777665543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.7e-29  Score=222.54  Aligned_cols=255  Identities=19%  Similarity=0.304  Sum_probs=212.0

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |||+|+||++|+.||.|.|||+.++....                   .-+....-.+.-|..+|.|+.|+.+ ..+||+
T Consensus       221 FSPDgqyLvsgSvDGFiEVWny~~GKlrK-------------------DLkYQAqd~fMMmd~aVlci~FSRD-sEMlAs  280 (508)
T KOG0275|consen  221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRK-------------------DLKYQAQDNFMMMDDAVLCISFSRD-SEMLAS  280 (508)
T ss_pred             eCCCCceEeeccccceeeeehhccchhhh-------------------hhhhhhhcceeecccceEEEeeccc-HHHhhc
Confidence            49999999999999999999997643211                   1112223345568899999999999 669999


Q ss_pred             EecCCcEEEEECCCCeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769          285 ASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  363 (502)
                      |+.||.|+||.+.+|+|++.|. .|+..|+|+.|+.++ ..+++++.|.++++.-+.+++....+.+|.+-|+.+.|.++
T Consensus       281 GsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d  359 (508)
T KOG0275|consen  281 GSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD  359 (508)
T ss_pred             cCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence            9999999999999999999995 899999999999999 78999999999999999999999888999999999999998


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe--cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      |. .+++++.||+|++|+..+.         .++.++.  +...+|+++..-|.++..+++|...++|+|.++...-...
T Consensus       360 G~-~iisaSsDgtvkvW~~Ktt---------eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs  429 (508)
T KOG0275|consen  360 GH-HIISASSDGTVKVWHGKTT---------ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS  429 (508)
T ss_pred             CC-eEEEecCCccEEEecCcch---------hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence            76 7999999999999999987         4444443  4567899999999989999999999999999987543222


Q ss_pred             EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ...-....+...++..+|.|.+ +.+.+.|+.++-|.+.+|+.-+.+.-+
T Consensus       430 fsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~Vh  478 (508)
T KOG0275|consen  430 FSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVH  478 (508)
T ss_pred             eccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceeeeeecc
Confidence            2222233456778889999997 777899999999999999876655443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=2.2e-28  Score=210.31  Aligned_cols=235  Identities=22%  Similarity=0.296  Sum_probs=195.8

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +.+|.+|.+++.|.++.||--..++                           ..-.+.||+++|+|+....+ ...|++|
T Consensus        19 N~eGDLlFscaKD~~~~vw~s~nGe---------------------------rlGty~GHtGavW~~Did~~-s~~liTG   70 (327)
T KOG0643|consen   19 NREGDLLFSCAKDSTPTVWYSLNGE---------------------------RLGTYDGHTGAVWCCDIDWD-SKHLITG   70 (327)
T ss_pred             cCCCcEEEEecCCCCceEEEecCCc---------------------------eeeeecCCCceEEEEEecCC-cceeeec
Confidence            7899999999999999999764432                           23356699999999999988 6799999


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-----CCCcEEEEeCCCCC-------CccceEeecC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----FDRSVVMKDARIST-------HSGFKWAVAA  353 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-----~dg~i~vwd~~~~~-------~~~~~~~~~~  353 (502)
                      ++|.+++|||+.+|+++.+++ ...+|..+.|++.| ++++.+.     ..+.|.++|++...       +......+.+
T Consensus        71 SAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s  148 (327)
T KOG0643|consen   71 SADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS  148 (327)
T ss_pred             cccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc
Confidence            999999999999999999997 57899999999999 6555554     34679999998432       2333445668


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .++.+.|.|-+. ++++|..+|.|.+||++++        ...+.+...|...|+.++++|+. .+++|+|.|.+-++||
T Consensus       149 kit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g--------~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D  218 (327)
T KOG0643|consen  149 KITSALWGPLGE-TIIAGHEDGSISIYDARTG--------KELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVD  218 (327)
T ss_pred             ceeeeeecccCC-EEEEecCCCcEEEEEcccC--------ceeeechhhhccccccccccCCc-ceEEecccCccceeee
Confidence            899999999876 8999999999999999998        46777778899999999999998 9999999999999999


Q ss_pred             CCCCCee-----------------------------------------------------EEEEecCCCCCEEEEEEcCC
Q 010769          434 LSNNQPS-----------------------------------------------------CIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       434 ~~~~~~~-----------------------------------------------------~~~~~~~~~~~v~~~~~spd  460 (502)
                      +.+....                                                     .+-...+|-++|++++|+|+
T Consensus       219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd  298 (327)
T KOG0643|consen  219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD  298 (327)
T ss_pred             ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence            8763210                                                     12233568899999999999


Q ss_pred             CCcEEEEEeCCCcEEEEECCC
Q 010769          461 SPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       461 ~~~llasg~~dg~i~vwd~~~  481 (502)
                      |. ..++||.||.|++.-+..
T Consensus       299 Gk-sYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  299 GK-SYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             Cc-ccccCCCCceEEEEEecc
Confidence            99 599999999999986644

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.5e-28  Score=209.39  Aligned_cols=249  Identities=23%  Similarity=0.436  Sum_probs=212.4

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      -.++|       +-+|..||+|+.|+++.||+++...                         ........+|.+.|-.++
T Consensus        24 ~Sv~w-------n~~g~~lasgs~dktv~v~n~e~~r-------------------------~~~~~~~~gh~~svdql~   71 (313)
T KOG1407|consen   24 HSVAW-------NCDGTKLASGSFDKTVSVWNLERDR-------------------------FRKELVYRGHTDSVDQLC   71 (313)
T ss_pred             eEEEE-------cccCceeeecccCCceEEEEecchh-------------------------hhhhhcccCCCcchhhhe
Confidence            45666       5789999999999999999997531                         223335568999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  353 (502)
                      |+|....+|++++.|.+|++||+++++++..+....+ -.-+.|+|+| .++++++.|..|.+.|.|+.+... ......
T Consensus        72 w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-ni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~-~~~~~~  148 (313)
T KOG1407|consen   72 WDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-NINITWSPDG-EYIAVGNKDDRITFIDARTYKIVN-EEQFKF  148 (313)
T ss_pred             eCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-ceEEEEcCCC-CEEEEecCcccEEEEEecccceee-hhcccc
Confidence            9999899999999999999999999999998874444 4457899999 899999999999999999876544 445566


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .+.-++|+-. ..+|+.....|+|.|......         +++.++.+|.....||.|+|+| ++||+|+.|..+.+||
T Consensus       149 e~ne~~w~~~-nd~Fflt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD  217 (313)
T KOG1407|consen  149 EVNEISWNNS-NDLFFLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWD  217 (313)
T ss_pred             eeeeeeecCC-CCEEEEecCCceEEEEecccc---------ccccccccCCcceEEEEECCCC-ceEeeccccceeeccC
Confidence            7888899854 457777777899999988865         8999999999999999999999 9999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +...  .|+..+..+.-+|..++|+.+|+ +||+|+.|..|-|=++.+|..+.++...
T Consensus       218 ~~EL--iC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  218 VDEL--ICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEIPCE  272 (313)
T ss_pred             hhHh--hhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEeecc
Confidence            9765  47888888899999999999999 5999999999999999988887665443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=2.6e-28  Score=243.83  Aligned_cols=287  Identities=26%  Similarity=0.385  Sum_probs=235.5

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      +...+.+.+|+  +..+++++.+.   +|.+|...........+..|...+     .+++.       ...+.+|++|+.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~---tl~~~~~~~~~~i~~~l~GH~g~V-----~~l~~-------~~~~~~lvsgS~  269 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDS---TLHLWDLNNGYLILTRLVGHFGGV-----WGLAF-------PSGGDKLVSGST  269 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCc---eeEEeecccceEEEeeccCCCCCc-----eeEEE-------ecCCCEEEEEec
Confidence            45678888888  77788888775   555555444332111233444333     45544       235899999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      |.+++|||+.++.+..                           .+.+|...|.++...+.   ++++||.|.+|++|++.
T Consensus       270 D~t~rvWd~~sg~C~~---------------------------~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~  319 (537)
T KOG0274|consen  270 DKTERVWDCSTGECTH---------------------------SLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVT  319 (537)
T ss_pred             CCcEEeEecCCCcEEE---------------------------EecCCCceEEEEEccCc---eEeeccCCceEEEEecc
Confidence            9999999988755543                           45689999999998755   78899999999999999


Q ss_pred             CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeE
Q 010769          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i  377 (502)
                      ++.++..+.+|..+|.++..+  + .++++|+.|++|++|++++.++.....+|...|.++.+.+.  ..+++|+.|+.|
T Consensus       320 n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  320 NGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTI  394 (537)
T ss_pred             CcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccce
Confidence            999999999999999999998  4 78999999999999999999999888899999999988764  589999999999


Q ss_pred             EEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC-CCCCEEEEE
Q 010769          378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVA  456 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~  456 (502)
                      ++||+++.        .+++..+.+|..-+.++.+..   ++|++++.|++|++||..+++  ++....+ |.+.|..++
T Consensus       395 kvWdl~~~--------~~c~~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~--~~~~~~~~~~~~v~~l~  461 (537)
T KOG0274|consen  395 KVWDLRTK--------RKCIHTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGE--CLRTLEGRHVGGVSALA  461 (537)
T ss_pred             EeecCCch--------hhhhhhhcCCccccccccccc---ceeEeccccccEEEeecccCc--eeeeeccCCcccEEEee
Confidence            99999986        368899999999998887763   899999999999999999998  5666666 678899988


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          457 FSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       457 ~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      +.  .. .+++++.+|++++||+++++.++..+...
T Consensus       462 ~~--~~-~il~s~~~~~~~l~dl~~~~~~~~l~~~~  494 (537)
T KOG0274|consen  462 LG--KE-EILCSSDDGSVKLWDLRSGTLIRTLLSTD  494 (537)
T ss_pred             cC--cc-eEEEEecCCeeEEEecccCchhhhhhhcc
Confidence            87  23 58889999999999999999998775554

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.7e-27  Score=236.41  Aligned_cols=248  Identities=20%  Similarity=0.236  Sum_probs=185.4

Q ss_pred             ceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          194 LCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~w~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .++.|       +| ++++||+|+.|++|+||++.......                    ........+.+|...|.+|
T Consensus        79 ~~v~f-------sP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------------~~~~~l~~L~gH~~~V~~l  131 (493)
T PTZ00421         79 IDVAF-------NPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------------NISDPIVHLQGHTKKVGIV  131 (493)
T ss_pred             EEEEE-------cCCCCCEEEEEeCCCEEEEEecCCCcccc--------------------ccCcceEEecCCCCcEEEE
Confidence            67777       66 78999999999999999997532110                    0012334567899999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      +|+|.+.++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++.......|.
T Consensus       132 ~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~  210 (493)
T PTZ00421        132 SFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHA  210 (493)
T ss_pred             EeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence            9999866799999999999999999999999999999999999999998 899999999999999999887665445555


Q ss_pred             CC-eEEEEeCCCCCCEEEEE---eCCCeEEEEECCCCCCCCCCCCCCccEEEecC-CCCeeEEEEcCCCCCEEEEEe-CC
Q 010769          353 AD-VESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGS-TD  426 (502)
Q Consensus       353 ~~-v~~v~~~p~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s-~d  426 (502)
                      +. +..+.|.+.+..++.+|   +.++.|++||+++.        ..++.....+ ...+....|++++ .+|++++ .|
T Consensus       211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~--------~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgD  281 (493)
T PTZ00421        211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM--------ASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGE  281 (493)
T ss_pred             CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC--------CCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCC
Confidence            43 45778998766444444   24799999999976        2444444333 3456667789987 7777776 59


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      +.|++||+.++++.....+ .+..++..++|.|...  +-+ ..--..++|.+...
T Consensus       282 g~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~~--~dv-~~~Ei~r~~~l~~~  333 (493)
T PTZ00421        282 GNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKWS--LDT-RKCEIARFYALTYH  333 (493)
T ss_pred             CeEEEEEeeCCceEEEeec-cCCCCCcceEeccccc--ccc-cceeeeEEEEecCC
Confidence            9999999999875433322 3455788899988643  111 11124567776544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2.8e-28  Score=219.29  Aligned_cols=241  Identities=25%  Similarity=0.365  Sum_probs=199.5

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC--CcEEEEEe
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF--RNILASAS  286 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~~l~sgs  286 (502)
                      +.++++|++||.++||+..                            .+......||+++|.+++|.-.+  ...|+++|
T Consensus       115 ~~~IltgsYDg~~riWd~~----------------------------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas  166 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLK----------------------------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS  166 (423)
T ss_pred             CceEEEeecCCeeEEEecC----------------------------CceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence            8899999999999999986                            33444566999999999885432  23699999


Q ss_pred             cCCcEEEEECCCCee----eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC---------------------
Q 010769          287 ADKQVKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI---------------------  341 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~---------------------  341 (502)
                      .|.++++|-++.+..    +..-++|...|.++...+++ ..+++|+.|.+|.||+..+                     
T Consensus       167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~  245 (423)
T KOG0313|consen  167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK  245 (423)
T ss_pred             CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence            999999999887643    33345999999999999999 8999999999999999321                     


Q ss_pred             ----CCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769          342 ----STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       342 ----~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                          ..+.....+|..+|.+|.|++.  ..+++++.|.+|+.||+.++         ....++. ....++++.++|.. 
T Consensus       246 ~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg---------~~~~~~~-~~ksl~~i~~~~~~-  312 (423)
T KOG0313|consen  246 EGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETG---------GLKSTLT-TNKSLNCISYSPLS-  312 (423)
T ss_pred             cccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecc---------cceeeee-cCcceeEeeccccc-
Confidence                1112234578889999999983  47999999999999999987         4444443 46779999999977 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-cccccccC
Q 010769          418 NLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA-GISNRFSK  491 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~-~~~~~~~~  491 (502)
                      .+|++|+.|..|++||.+++.- ....++.+|.+.|.++.|+|...|+|++|+.|+++++||+++.+ .+..+.+|
T Consensus       313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h  388 (423)
T KOG0313|consen  313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH  388 (423)
T ss_pred             ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence            9999999999999999998753 34567889999999999999999999999999999999999987 66666555

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.7e-28  Score=238.92  Aligned_cols=297  Identities=20%  Similarity=0.241  Sum_probs=235.2

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeec-cccCCC---cceeeeecCCCCCCCCCCEEEEe
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH-IIIPAF---PLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~-~~~~~~---~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ....++...++-+.|++++..    .++||.++....   .....|. ...+..   ...+.|.      .-..++|||+
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs----~lklyai~~~~~---~~~~~~~~k~kqn~~~S~~DVkW~------~~~~NlIAT~  106 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS----LLKLYAINPNDF---SEKCNHRFKTKQNKFYSAADVKWG------QLYSNLIATC  106 (839)
T ss_pred             cccceEeecCCcceeEEeccc----ceeeEeeCcccC---Ccceeeecccccceeeehhhcccc------cchhhhheee
Confidence            457788888998888888655    689998876654   2222221 111111   1223442      2358999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +..|.|.+||+...                        ...+....+..|...|+++.|++...++|+|||.||+|++||
T Consensus       107 s~nG~i~vWdlnk~------------------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D  162 (839)
T KOG0269|consen  107 STNGVISVWDLNKS------------------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD  162 (839)
T ss_pred             cCCCcEEEEecCcc------------------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence            99999999999731                        123444567789999999999999999999999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc-cceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  374 (502)
                      ++..+...++.+.+..|..+.|+|..++.|+++...|.+++||+|.+... ..+..|.++|.|+.|+|+ ..+|++|+.|
T Consensus       163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRD  241 (839)
T KOG0269|consen  163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRD  241 (839)
T ss_pred             eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCC
Confidence            99999999999899999999999998899999999999999999987654 345689999999999995 5599999999


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCCCCCE
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      +.|+|||+....       ..+..++. ...+|.++.|-|..+.+|++++.  |-.|+|||++..- +...++..|...+
T Consensus       242 K~vkiWd~t~~~-------~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~eH~~~v  312 (839)
T KOG0269|consen  242 KMVKIWDMTDSR-------AKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-IPYATFLEHTDSV  312 (839)
T ss_pred             ccEEEEeccCCC-------ccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc-ccceeeeccCccc
Confidence            999999998753       23444443 45789999999998889999876  7889999998753 4667788899999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       453 ~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +.++|....+.+|.+++.||+|..-.+....
T Consensus       313 t~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  313 TGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             cceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            9999977555578999999988766555443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.2e-27  Score=209.27  Aligned_cols=277  Identities=16%  Similarity=0.291  Sum_probs=216.1

Q ss_pred             CccccccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          138 DSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .++.|.+++|+| .+.++++++.++   ++++|.+.....    +.......+.+.++|+.|       +.+|+.+++|+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~---tVR~wevq~~g~----~~~ka~~~~~~PvL~v~W-------sddgskVf~g~   91 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDG---TVRIWEVQNSGQ----LVPKAQQSHDGPVLDVCW-------SDDGSKVFSGG   91 (347)
T ss_pred             cccchheeEeccccCceEEecccCC---ceEEEEEecCCc----ccchhhhccCCCeEEEEE-------ccCCceEEeec
Confidence            567899999999 567777888887   568888776532    222233345566799999       78999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEEEEecCCcEEEEE
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWD  295 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~Dg~v~vwd  295 (502)
                      .|+.+++|||.+++..                            ....|..+|.++.|-+.. ...|++||.|++|+.||
T Consensus        92 ~Dk~~k~wDL~S~Q~~----------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD  143 (347)
T KOG0647|consen   92 CDKQAKLWDLASGQVS----------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD  143 (347)
T ss_pred             cCCceEEEEccCCCee----------------------------eeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence            9999999999865322                            234699999999998762 23899999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc--ceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      ++...++.++. -.+.|.++..-.   .+++++..++.|.+|+++.+....  ......-.++||+..++.. .++.|+-
T Consensus       144 ~R~~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsi  218 (347)
T KOG0647|consen  144 TRSSNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSI  218 (347)
T ss_pred             cCCCCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeee
Confidence            99999999887 467788877643   578899999999999998764332  2224556789999988766 4699999


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCC---------CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---------AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      .|.+.+..+..+..       ..-+++..|..         .|++|+|+|.. ..|+|++.||++.+||-....  .+.+
T Consensus       219 EGrv~iq~id~~~~-------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~--kLk~  288 (347)
T KOG0647|consen  219 EGRVAIQYIDDPNP-------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDART--KLKT  288 (347)
T ss_pred             cceEEEEecCCCCc-------cCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhh--hhhc
Confidence            99999998887522       34455555652         58889999976 899999999999999987665  5667


Q ss_pred             ecCCCCCEEEEEEcCCCCcEEEEEeCC
Q 010769          445 RNPKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~llasg~~d  471 (502)
                      ...|..+|++.+|+.+|.+...+.|.|
T Consensus       289 s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  289 SETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             cCcCCCccceeEecCCCCEEEEEeecc
Confidence            788999999999999999644455544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.9e-28  Score=202.97  Aligned_cols=280  Identities=18%  Similarity=0.213  Sum_probs=218.6

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      +-+.+.|.++.|+-+|++.++++.+.   ++++|+--.+.  -..-|..|...+    +..       +.+.+...|++|
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdr---tvrLWNp~rg~--liktYsghG~EV----lD~-------~~s~Dnskf~s~   77 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDR---TVRLWNPLRGA--LIKTYSGHGHEV----LDA-------ALSSDNSKFASC   77 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCc---eEEeecccccc--eeeeecCCCcee----eec-------cccccccccccC
Confidence            34788999999999999999999887   55666543332  123343343222    111       225678889999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|..|.+||++++..                           ...+.+|...|+.++|+.. ...+++||.|.++++||
T Consensus        78 GgDk~v~vwDV~TGkv---------------------------~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wD  129 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKV---------------------------DRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWD  129 (307)
T ss_pred             CCCceEEEEEcccCee---------------------------eeecccccceeeEEEecCc-ceEEEeccccceeEEEE
Confidence            9999999999987443                           3456799999999999998 67999999999999999


Q ss_pred             CCCC--eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769          296 VAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      .++.  ++++.+......|.++..+.   ..+++|+.||+++.||+|.++...  --...+|+|++|++++. ..++++.
T Consensus       130 CRS~s~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~n-c~La~~l  203 (307)
T KOG0316|consen  130 CRSRSFEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGN-CSLASSL  203 (307)
T ss_pred             cccCCCCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCCC-EEEEeec
Confidence            9865  68888888889999999976   569999999999999999887654  23467899999999876 7889999


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe--eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCC
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV--CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA  451 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  451 (502)
                      +++|++.|-.++         +.+....+|...-  ...+++... ..+++||.||.|++||+....  .+..+..+...
T Consensus       204 ~stlrLlDk~tG---------klL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~v  271 (307)
T KOG0316|consen  204 DSTLRLLDKETG---------KLLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDET--QISKLSVVSTV  271 (307)
T ss_pred             cceeeecccchh---------HHHHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccce--eeeeeccCCce
Confidence            999999999987         7788888887643  334555554 899999999999999999887  45566666666


Q ss_pred             -EEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          452 -VFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       452 -v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                       |..+.++|.-.- |+++.. +.+.+|--
T Consensus       272 ~v~dl~~hp~~~~-f~~A~~-~~~~~~~~  298 (307)
T KOG0316|consen  272 IVTDLSCHPTMDD-FITATG-HGDLFWYQ  298 (307)
T ss_pred             eEEeeecccCccc-eeEecC-Cceeceee
Confidence             889999998764 444433 34666643

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7e-29  Score=241.54  Aligned_cols=257  Identities=20%  Similarity=0.333  Sum_probs=211.4

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .++-+.|++++. ..+.||.++......+...-.+             . +      +.-.-.+..+.|+....++||++
T Consensus        48 nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k-------------~-k------qn~~~S~~DVkW~~~~~NlIAT~  106 (839)
T KOG0269|consen   48 NRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFK-------------T-K------QNKFYSAADVKWGQLYSNLIATC  106 (839)
T ss_pred             cCCcceeEEecc-cceeeEeeCcccCCcceeeecc-------------c-c------cceeeehhhcccccchhhhheee
Confidence            356666777765 5788888875544443322110             0 0      01123467788988778999999


Q ss_pred             ecCCcEEEEECCC---CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769          286 SADKQVKIWDVAA---GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       286 s~Dg~v~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p  362 (502)
                      +..|.|.+||+..   .+.+..|..|...++++.|++..+++|++|+.||+|++||+|..+...........|+.|.|+|
T Consensus       107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP  186 (839)
T ss_pred             cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence            9999999999987   5667788999999999999999999999999999999999999888877777788899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      ..++.|+++...|.|++||+|..        .++...+.+|.++|.|+.|+|++ .+|||||.|++|+||++.+.+...+
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp--------~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~  257 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQP--------DRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPK  257 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCc--------hhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccce
Confidence            98899999999999999999988        58889999999999999999976 9999999999999999998776555


Q ss_pred             EEecCCCCCEEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCccccccccCCC
Q 010769          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~llasg~~--dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                      .+.. ...+|.++.|-|..+|.||+++.  |-.|+|||++..-.....|..+.
T Consensus       258 ~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~  309 (839)
T KOG0269|consen  258 HTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT  309 (839)
T ss_pred             eEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence            5554 35789999999999999998875  56899999987766655554443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=9.4e-29  Score=210.58  Aligned_cols=287  Identities=20%  Similarity=0.320  Sum_probs=226.5

Q ss_pred             CCCCcccccccccc---CCCceEEEEEecCCcceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010769          135 DDEDSEDLEDMTIN---PNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       135 ~~~~~~~v~~~~~~---p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~  210 (502)
                      ...|...|-++.|+   |+|-+|++++.++..     ..-+...+. .-.+..|...         .|..+   ...+..
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~p-----mlr~g~tgdwigtfeghkga---------vw~~~---l~~na~   72 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKP-----MLRNGDTGDWIGTFEGHKGA---------VWSAT---LNKNAT   72 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCc-----hhccCCCCCcEEeeeccCcc---------eeeee---cCchhh
Confidence            35688889999988   578899999987621     111111110 0122233322         23211   145567


Q ss_pred             EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~  290 (502)
                      ..|+++.|=+-+|||.-+++.+..+                            .|...|..++|+.+ .++|++|+.+..
T Consensus        73 ~aasaaadftakvw~a~tgdelhsf----------------------------~hkhivk~~af~~d-s~~lltgg~ekl  123 (334)
T KOG0278|consen   73 RAASAAADFTAKVWDAVTGDELHSF----------------------------EHKHIVKAVAFSQD-SNYLLTGGQEKL  123 (334)
T ss_pred             hhhhhcccchhhhhhhhhhhhhhhh----------------------------hhhheeeeEEeccc-chhhhccchHHH
Confidence            7888999999999998776665432                            58899999999999 779999999999


Q ss_pred             EEEEECCCCe-eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEE
Q 010769          291 VKIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       291 v~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  369 (502)
                      ++|||++..+ +...+.+|++.|..+-|.... +.+++++.|++||+||.+++.... ....+.+|+++..+++|.  ++
T Consensus       124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~-sL~~~s~VtSlEvs~dG~--il  199 (334)
T KOG0278|consen  124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQ-SLEFNSPVTSLEVSQDGR--IL  199 (334)
T ss_pred             hhhhhccCCCCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEE-EEecCCCCcceeeccCCC--EE
Confidence            9999998764 567789999999999999888 788888999999999999988765 667789999999999875  56


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ecCC
Q 010769          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPK  448 (502)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~~~  448 (502)
                      +-...+.|.+||..+.         .++.... -...|.+.+++|.. ..+++|+.|..++.||+.++..  +.. ..+|
T Consensus       200 Tia~gssV~Fwdaksf---------~~lKs~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeE--i~~~nkgh  266 (334)
T KOG0278|consen  200 TIAYGSSVKFWDAKSF---------GLLKSYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEE--IGSYNKGH  266 (334)
T ss_pred             EEecCceeEEeccccc---------cceeecc-CccccccccccCCC-ceEEecCcceEEEEEeccCCce--eeecccCC
Confidence            6666788999999886         4454444 34568999999987 8999999999999999999874  333 4789


Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       449 ~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      .++|.|+.|+|+|. +.|+|+.||+|+||.+..++..
T Consensus       267 ~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  267 FGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCceEEEEECCCCc-eeeccCCCceEEEEEecCCCch
Confidence            99999999999999 7999999999999999776654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1e-28  Score=220.83  Aligned_cols=293  Identities=19%  Similarity=0.404  Sum_probs=232.6

Q ss_pred             CcccCCCCCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCC
Q 010769          129 PYLKDKDDEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       129 ~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~  207 (502)
                      |++..- ..|.+.|.+++-+|.. ..+++|+.+|   .++||.+.....  ...+.-|...+.++  |+           
T Consensus        57 PFv~~L-~gHrdGV~~lakhp~~ls~~aSGs~DG---~VkiWnlsqR~~--~~~f~AH~G~V~Gi--~v-----------  117 (433)
T KOG0268|consen   57 PFVGSL-DGHRDGVSCLAKHPNKLSTVASGSCDG---EVKIWNLSQREC--IRTFKAHEGLVRGI--CV-----------  117 (433)
T ss_pred             cchhhc-cccccccchhhcCcchhhhhhccccCc---eEEEEehhhhhh--hheeecccCceeeE--Ee-----------
Confidence            555432 5699999999999998 8899999998   457777765432  12334444343222  22           


Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      +...+++++.|.+|+.|.++..    +..                        .+ .....++.|.-+.. .+.++||+.
T Consensus       118 ~~~~~~tvgdDKtvK~wk~~~~----p~~------------------------ti-lg~s~~~gIdh~~~-~~~FaTcGe  167 (433)
T KOG0268|consen  118 TQTSFFTVGDDKTVKQWKIDGP----PLH------------------------TI-LGKSVYLGIDHHRK-NSVFATCGE  167 (433)
T ss_pred             cccceEEecCCcceeeeeccCC----cce------------------------ee-eccccccccccccc-cccccccCc
Confidence            2267888889999999998742    111                        11 12355677777666 568999887


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  367 (502)
                      +  |-|||.....++.++.-....|.++.|+|....+|++|+.|+.|.+||+|+..+.. .......-+.++|+| ....
T Consensus       168 ~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~mRTN~IswnP-eafn  243 (433)
T KOG0268|consen  168 Q--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTMRTNTICWNP-EAFN  243 (433)
T ss_pred             e--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeeccccceecCc-cccc
Confidence            4  99999999999999988889999999999998999999999999999999988765 555666778999999 4567


Q ss_pred             EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010769          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP  447 (502)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~  447 (502)
                      |+++.+|..++.||+|..        ..++....+|.+.|.++.|||.| .-+++||.|.+|+||..+.+...-+ ....
T Consensus       244 F~~a~ED~nlY~~DmR~l--------~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdi-Yhtk  313 (433)
T KOG0268|consen  244 FVAANEDHNLYTYDMRNL--------SRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDI-YHTK  313 (433)
T ss_pred             eeeccccccceehhhhhh--------cccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhh-hhHh
Confidence            999999999999999998        58888999999999999999998 8999999999999999988764222 2233


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      ..+.|+|+.||.|.+| +++|+.|++|++|.....+.+
T Consensus       314 RMq~V~~Vk~S~Dsky-i~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  314 RMQHVFCVKYSMDSKY-IISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             hhheeeEEEEeccccE-EEecCCCcceeeeecchhhhc
Confidence            4567999999999997 889999999999998766654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=2.1e-28  Score=222.27  Aligned_cols=282  Identities=18%  Similarity=0.297  Sum_probs=220.4

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC-CCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~  214 (502)
                      +-|..++.++.|.++...|++|+.+.   .+++|....... ....|++....     .+.+.       |.++++++++
T Consensus       172 d~h~gev~~v~~l~~sdtlatgg~Dr---~Ik~W~v~~~k~~~~~tLaGs~g~-----it~~d-------~d~~~~~~iA  236 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNSDTLATGGSDR---IIKLWNVLGEKSELISTLAGSLGN-----ITSID-------FDSDNKHVIA  236 (459)
T ss_pred             hccccccceeEEccCcchhhhcchhh---hhhhhhcccchhhhhhhhhccCCC-----cceee-------ecCCCceEEe
Confidence            45889999999999999999999887   456666554331 01112211111     12333       2678999999


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      ++.|+.+++|+++.                           .+....+.+|++.|+++.|... ...+++|+.|.+|++|
T Consensus       237 as~d~~~r~Wnvd~---------------------------~r~~~TLsGHtdkVt~ak~~~~-~~~vVsgs~DRtiK~W  288 (459)
T KOG0288|consen  237 ASNDKNLRLWNVDS---------------------------LRLRHTLSGHTDKVTAAKFKLS-HSRVVSGSADRTIKLW  288 (459)
T ss_pred             ecCCCceeeeeccc---------------------------hhhhhhhcccccceeeehhhcc-ccceeeccccchhhhh
Confidence            99999999999975                           4455577799999999999887 4459999999999999


Q ss_pred             ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  374 (502)
                      |+....|.+++- ..+.+..|..++   ..+++|-.|++|++||.|+..... .....+.|+++..++++. .+++++.|
T Consensus       289 Dl~k~~C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~-sv~~gg~vtSl~ls~~g~-~lLsssRD  362 (459)
T KOG0288|consen  289 DLQKAYCSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTR-SVPLGGRVTSLDLSMDGL-ELLSSSRD  362 (459)
T ss_pred             hhhhhheecccc-ccccccceEecc---eeeeecccccceEEEeccCCceee-EeecCcceeeEeeccCCe-EEeeecCC
Confidence            999999888875 345666777663   679999999999999999988765 556667999999999765 67788999


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecC----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG  450 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~  450 (502)
                      .++.++|+++.         .....+.+.    ....+.+.|||++ .|+++||.||.|+||++.+++...+........
T Consensus       363 dtl~viDlRt~---------eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~  432 (459)
T KOG0288|consen  363 DTLKVIDLRTK---------EIRQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA  432 (459)
T ss_pred             Cceeeeecccc---------cEEEEeeccccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEEEeccCCCCc
Confidence            99999999987         333333321    2348899999998 999999999999999999998655555444444


Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769          451 AVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       451 ~v~~~~~spd~~~llasg~~dg~i~vw  477 (502)
                      .|++++|+|.|.+ |++++.++.+.+|
T Consensus       433 aI~s~~W~~sG~~-Llsadk~~~v~lW  458 (459)
T KOG0288|consen  433 AITSLSWNPSGSG-LLSADKQKAVTLW  458 (459)
T ss_pred             ceEEEEEcCCCch-hhcccCCcceEec
Confidence            6999999999998 6678889999999

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.3e-27  Score=241.79  Aligned_cols=314  Identities=18%  Similarity=0.287  Sum_probs=229.3

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCC----CC---CceeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG----GD---PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~----~~---~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~  210 (502)
                      ++..|.++.++|++..+++|+.-.|. .+.||..+.-..    ..   +.+...+. -..+-..|+.|       ++||.
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~-~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~-------S~dG~   82 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDG-GIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRF-------SPDGS   82 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccc-cceeeccccccchhhhhhcccchhheeec-cccCceeEEEE-------CCCCC
Confidence            34468999999999999999833322 234776543221    00   11111111 11233368777       89999


Q ss_pred             EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~  290 (502)
                      +||+|+.|+.|.||..... .  ....+|....      .+.-...+....+.+|...|..+.|+|+ ..+|+++|.|++
T Consensus        83 ~lAsGSDD~~v~iW~~~~~-~--~~~~fgs~g~------~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~Dns  152 (942)
T KOG0973|consen   83 YLASGSDDRLVMIWERAEI-G--SGTVFGSTGG------AKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNS  152 (942)
T ss_pred             eEeeccCcceEEEeeeccc-C--Cccccccccc------ccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccce
Confidence            9999999999999998741 1  1111211111      0112234556677899999999999998 669999999999


Q ss_pred             EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE------eecCCeEEEEeCCCC
Q 010769          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------AVAADVESLAWDPHA  364 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~v~~~p~~  364 (502)
                      |.||+..+.+.+..+.+|.+.|..+.|.|-| ++|++-+.|++|++|.+..........      .....+..+.|+|+|
T Consensus       153 Viiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG  231 (942)
T KOG0973|consen  153 VIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG  231 (942)
T ss_pred             EEEEccccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc
Confidence            9999999999999999999999999999999 999999999999999976543322111      123457899999998


Q ss_pred             CCEEEEE-eCC---CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC--------C----CC----EEEEEe
Q 010769          365 EHSFVVS-LED---GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------V----PN----LLATGS  424 (502)
Q Consensus       365 ~~~l~~~-~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~--------~----~~----~l~t~s  424 (502)
                      . +|++. +.+   .++.|.+-.+.         +.-..+.+|.+++.+++|+|.        |    +.    ++|+||
T Consensus       232 ~-~las~nA~n~~~~~~~IieR~tW---------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS  301 (942)
T KOG0973|consen  232 H-HLASPNAVNGGKSTIAIIERGTW---------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS  301 (942)
T ss_pred             C-eecchhhccCCcceeEEEecCCc---------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence            7 55554 222   35777776554         667788999999999999982        1    11    788999


Q ss_pred             CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      .|++|.||.....+|..+ ........|..++|+|||. .|.+++.||+|.+..+...+
T Consensus       302 qDrSlSVW~T~~~RPl~v-i~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  302 QDRSLSVWNTALPRPLFV-IHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CCccEEEEecCCCCchhh-hhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcchHH
Confidence            999999999988876433 2333456799999999998 47778999999999997544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=213.88  Aligned_cols=255  Identities=18%  Similarity=0.267  Sum_probs=203.0

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+.+++|||+.|..-.||++.+++..                           ..+.+|.+.|+++.|+.+ +.+||||
T Consensus        73 ~P~~~l~aTGGgDD~AflW~~~~ge~~---------------------------~eltgHKDSVt~~~Fshd-gtlLATG  124 (399)
T KOG0296|consen   73 HPNNNLVATGGGDDLAFLWDISTGEFA---------------------------GELTGHKDSVTCCSFSHD-GTLLATG  124 (399)
T ss_pred             CCCCceEEecCCCceEEEEEccCCcce---------------------------eEecCCCCceEEEEEccC-ceEEEec
Confidence            688999999999999999999876522                           234589999999999999 6699999


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  365 (502)
                      ..+|.|+||...++.....+...-..+.=+.|||.+ .+|++|+.||.+-+|.+.++.....+.+|..++++=.|.|+|+
T Consensus       125 dmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK  203 (399)
T KOG0296|consen  125 DMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK  203 (399)
T ss_pred             CCCccEEEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc
Confidence            999999999999999888887666788889999988 9999999999999999998766666788999999999999976


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCC----------------------------------CCCccEEEe--------cC
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDST----------------------------------SQQSSFTLH--------AH  403 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------------~~~~~~~~~--------~h  403 (502)
                       .++++..||+|++|+..++.+.....                                  ..+.+....        .+
T Consensus       204 -r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~  282 (399)
T KOG0296|consen  204 -RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ  282 (399)
T ss_pred             -eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence             79999999999999999874310000                                  000011111        12


Q ss_pred             CCCeeEEEEcCCCC--CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          404 DKAVCTISYNPLVP--NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       404 ~~~v~~l~~sp~~~--~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ...+.|+.+.|...  .+.|+|+.||+|.|||+...+++   ..-.|..+|+.+.|.+ ..| |++++.+|.|+.||.++
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R---~~c~he~~V~~l~w~~-t~~-l~t~c~~g~v~~wDaRt  357 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR---HICEHEDGVTKLKWLN-TDY-LLTACANGKVRQWDART  357 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEecccchhh---eeccCCCceEEEEEcC-cch-heeeccCceEEeeeccc
Confidence            22333333333221  47889999999999999988743   3345677899999999 565 77889999999999999


Q ss_pred             CccccccccCCCCC
Q 010769          482 DAGISNRFSKYSKP  495 (502)
Q Consensus       482 ~~~~~~~~~~~~~~  495 (502)
                      |.++..+.+|....
T Consensus       358 G~l~~~y~GH~~~I  371 (399)
T KOG0296|consen  358 GQLKFTYTGHQMGI  371 (399)
T ss_pred             cceEEEEecCchhe
Confidence            99999988887643

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.3e-26  Score=203.65  Aligned_cols=272  Identities=22%  Similarity=0.360  Sum_probs=211.6

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      ..+.|.++.|+|..+.|++++.++   +|++|.......   .+...|..++    ++.++.        +...+++|+.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDg---slrlYdv~~~~l---~~~~~~~~pl----L~c~F~--------d~~~~~~G~~   73 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDG---SLRLYDVPANSL---KLKFKHGAPL----LDCAFA--------DESTIVTGGL   73 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccC---cEEEEeccchhh---hhheecCCce----eeeecc--------CCceEEEecc
Confidence            467899999999999999999998   667777766533   3434444443    666663        4678999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      ||.|+.+|+++....                            .+..|..+|.||.+++. ...+++||+|++|++||.+
T Consensus        74 dg~vr~~Dln~~~~~----------------------------~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   74 DGQVRRYDLNTGNED----------------------------QIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             CceEEEEEecCCcce----------------------------eeccCCCceEEEEeecc-CCeEEEcccCccEEEEecc
Confidence            999999999864322                            33469999999999987 6699999999999999999


Q ss_pred             CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc--eEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      ...++.++. ...+|.++..+.   +.|++|+.+..+.+||+|+......  .....-.++|+++.|.+. -+++++-+|
T Consensus       125 ~~~~~~~~d-~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieG  199 (323)
T KOG1036|consen  125 NKVVVGTFD-QGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEG  199 (323)
T ss_pred             ccccccccc-cCceEEEEeccC---CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecc
Confidence            866666665 345899888764   6799999999999999998765432  224556789999999655 588888999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCC---------CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHD---------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      .|.+=.+......     ....+.+..|.         -+|++|+|+|-. +.||||+.||.|.+||+.+.+  .+..+.
T Consensus       200 RVavE~~d~s~~~-----~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rK--rl~q~~  271 (323)
T KOG1036|consen  200 RVAVEYFDDSEEA-----QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRK--RLKQLA  271 (323)
T ss_pred             eEEEEccCCchHH-----hhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchh--hhhhcc
Confidence            9887655543110     24455666664         379999999986 899999999999999999887  455666


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEeC
Q 010769          447 PKAGAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~llasg~~  470 (502)
                      .....|.+++|+.+|. +||++++
T Consensus       272 ~~~~SI~slsfs~dG~-~LAia~s  294 (323)
T KOG1036|consen  272 KYETSISSLSFSMDGS-LLAIASS  294 (323)
T ss_pred             CCCCceEEEEeccCCC-eEEEEec
Confidence            6667899999999999 6888764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.4e-27  Score=200.53  Aligned_cols=242  Identities=25%  Similarity=0.384  Sum_probs=194.0

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEe-cCCCCcEEEEEe
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~l~sgs  286 (502)
                      -|+.|||++.|++|+|+.+.....                        ..+...+.||.++|+.++| +|..+.+|||++
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~------------------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs   77 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQ------------------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCS   77 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCC------------------------ceeeeEecCCCCCeeEEeecccccCcEeeEee
Confidence            499999999999999999865332                        2334456799999999999 677788999999


Q ss_pred             cCCcEEEEECCCCe--eeEEeccCCCCeEEEEEcCCC-CcEEEEEECCCcEEEEeCCCCC---CccceEeecCCeEEEEe
Q 010769          287 ADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARIST---HSGFKWAVAADVESLAW  360 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~v~~  360 (502)
                      .||.|.||.-.+++  ....+..|...|++++|.|.+ +-+|++++.||.|.|.+.+...   .......|.-.|++++|
T Consensus        78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             cCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence            99999999988775  344567899999999999875 2578899999999999988752   23345678889999999


Q ss_pred             CCC---C----------CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC---CCEEEEEe
Q 010769          361 DPH---A----------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV---PNLLATGS  424 (502)
Q Consensus       361 ~p~---~----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~---~~~l~t~s  424 (502)
                      .|.   |          .+.|++|+.|..|+||......       ...-.++.+|...|+.++|.|..   ..+||+||
T Consensus       158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S  230 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS  230 (299)
T ss_pred             cCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence            985   2          1359999999999999998762       24445689999999999999964   35899999


Q ss_pred             CCCcEEEEECCCC-CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          425 TDKMVKLWDLSNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       425 ~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      .||+|.||-.+.. .+.....+......+.+++||+.|. +|+.++.|+.|.+|.-..
T Consensus       231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             CCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeCC
Confidence            9999999987642 1112222333457899999999999 699999999999998654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=4.9e-27  Score=234.71  Aligned_cols=235  Identities=27%  Similarity=0.436  Sum_probs=207.5

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      ..++++|+.+++|++|+...+.                          .....+.+|.+.|+++++.. ++.+|++|+.|
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~--------------------------~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D  270 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGY--------------------------LILTRLVGHFGGVWGLAFPS-GGDKLVSGSTD  270 (537)
T ss_pred             cCeEEecCCCceeEEeecccce--------------------------EEEeeccCCCCCceeEEEec-CCCEEEEEecC
Confidence            7899999999999999986532                          22234679999999999987 46799999999


Q ss_pred             CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEE
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  368 (502)
                      .+++|||+.+|.|.+++.+|.+.|.++...+   .++++|+.|.+|++|++.++.......+|...|.++..+   ..++
T Consensus       271 ~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~l  344 (537)
T KOG0274|consen  271 KTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLL  344 (537)
T ss_pred             CcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEE
Confidence            9999999999999999999999999998876   568889999999999999998887666799999999998   3489


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC
Q 010769          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK  448 (502)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~  448 (502)
                      ++|+.||+|++|++++.         +++..+.+|...|.++.+.+.  ..+++|+.|++|++||+++.. .++.++.+|
T Consensus       345 vsgs~d~~v~VW~~~~~---------~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h  412 (537)
T KOG0274|consen  345 VSGSYDGTVKVWDPRTG---------KCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR-KCIHTLQGH  412 (537)
T ss_pred             EEEecCceEEEEEhhhc---------eeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh-hhhhhhcCC
Confidence            99999999999999976         899999999999999988863  789999999999999999983 388899999


Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       449 ~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ..-+..+.+..  . .|++++.|+.|++||..++++++.+.+.
T Consensus       413 ~~~v~~l~~~~--~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  413 TSLVSSLLLRD--N-FLVSSSADGTIKLWDAEEGECLRTLEGR  452 (537)
T ss_pred             ccccccccccc--c-eeEeccccccEEEeecccCceeeeeccC
Confidence            98887766644  4 5899999999999999999999887774

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.4e-26  Score=200.09  Aligned_cols=230  Identities=20%  Similarity=0.289  Sum_probs=185.8

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEEEEe
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs  286 (502)
                      ++.|+|+|+.|-+|+|||+.....                           ...+..|.+.|++|.|.+.. .+.|++|+
T Consensus        52 s~~~~aSGssDetI~IYDm~k~~q---------------------------lg~ll~HagsitaL~F~~~~S~shLlS~s  104 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKRKQ---------------------------LGILLSHAGSITALKFYPPLSKSHLLSGS  104 (362)
T ss_pred             cceeEeccCCCCcEEEEeccchhh---------------------------hcceeccccceEEEEecCCcchhheeeec
Confidence            699999999999999999964222                           22344699999999998872 13789999


Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  366 (502)
                      .||.|.+|+.....++.++++|.+.|+.++.||.+ .+.++.+.|+.+++||+-.++... ........+.|.|+|.|. 
T Consensus       105 dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~-v~~L~~~at~v~w~~~Gd-  181 (362)
T KOG0294|consen  105 DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAF-VLNLKNKATLVSWSPQGD-  181 (362)
T ss_pred             CCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccce-eeccCCcceeeEEcCCCC-
Confidence            99999999999999999999999999999999999 999999999999999998776543 445555666799999987 


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      .|+++..+ .|-+|.+.+.         . ++........+.++.|..  ...|++|+.++.|++||.....  +...+.
T Consensus       182 ~F~v~~~~-~i~i~q~d~A---------~-v~~~i~~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~--~~~~~~  246 (362)
T KOG0294|consen  182 HFVVSGRN-KIDIYQLDNA---------S-VFREIENPKRILCATFLD--GSELLVGGDNEWISLKDTDSDT--PLTEFL  246 (362)
T ss_pred             EEEEEecc-EEEEEecccH---------h-HhhhhhccccceeeeecC--CceEEEecCCceEEEeccCCCc--cceeee
Confidence            56665544 5888888765         2 222222335577777765  3789999999999999998865  577888


Q ss_pred             CCCCCEEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          447 PKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       447 ~~~~~v~~~~~--spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +|...|-.+.+  .|++. +|+++++||.|+|||+....
T Consensus       247 AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  247 AHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             cchhheeeeEEEecCCce-EEEEeccCceEEEEEccccc
Confidence            99999999985  45565 69999999999999998773

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.8e-25  Score=196.25  Aligned_cols=282  Identities=17%  Similarity=0.245  Sum_probs=209.0

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC-
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-  217 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~-  217 (502)
                      ...|+++.|+++|.+|++++.++   .|+||....+.. ...++.++-.+     -+..+       ....+.++.++. 
T Consensus        14 ~~~i~sl~fs~~G~~litss~dD---sl~LYd~~~g~~-~~ti~skkyG~-----~~~~F-------th~~~~~i~sStk   77 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDD---SLRLYDSLSGKQ-VKTINSKKYGV-----DLACF-------THHSNTVIHSSTK   77 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCC---eEEEEEcCCCce-eeEeecccccc-----cEEEE-------ecCCceEEEccCC
Confidence            56899999999999999988776   456665544332 01111111111     12223       234455555555 


Q ss_pred             -CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          218 -EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 -dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                       |.+||.-++..                           .+....+.||...|++|+.+|-+ ..++|+|.|++|++||+
T Consensus        78 ~d~tIryLsl~d---------------------------NkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDl  129 (311)
T KOG1446|consen   78 EDDTIRYLSLHD---------------------------NKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDL  129 (311)
T ss_pred             CCCceEEEEeec---------------------------CceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEe
Confidence             78999999865                           44555788999999999999994 79999999999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-ccceE----eecCCeEEEEeCCCCCCEEEEE
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKW----AVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~----~~~~~v~~v~~~p~~~~~l~~~  371 (502)
                      +..+|...+....  -..++|.|.| -+++++.....|++||+|.-.. +...+    ......+.+.|+|+|. .++.+
T Consensus       130 R~~~cqg~l~~~~--~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLls  205 (311)
T KOG1446|consen  130 RVKKCQGLLNLSG--RPIAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILLS  205 (311)
T ss_pred             cCCCCceEEecCC--CcceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEEE
Confidence            9888877775333  3357899999 8888888777999999997632 22222    2345688999999987 78888


Q ss_pred             eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe---eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC-
Q 010769          372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-  447 (502)
Q Consensus       372 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-  447 (502)
                      +..+.+++.|.-.+         ....++..+...-   .+.+|+|++ +++++|+.||+|.+|++.++..  +....+ 
T Consensus       206 T~~s~~~~lDAf~G---------~~~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~--v~~~~~~  273 (311)
T KOG1446|consen  206 TNASFIYLLDAFDG---------TVKSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKK--VAVLRGP  273 (311)
T ss_pred             eCCCcEEEEEccCC---------cEeeeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcE--eeEecCC
Confidence            89999999999887         5566666655433   577899998 9999999999999999999984  444444 


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +.+++.++.|+|... ++++++  ..+.+|=.....
T Consensus       274 ~~~~~~~~~fnP~~~-mf~sa~--s~l~fw~p~~~~  306 (311)
T KOG1446|consen  274 NGGPVSCVRFNPRYA-MFVSAS--SNLVFWLPDEDA  306 (311)
T ss_pred             CCCCccccccCCcee-eeeecC--ceEEEEeccccc
Confidence            789999999999876 576654  468888765433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=8e-27  Score=217.44  Aligned_cols=254  Identities=18%  Similarity=0.243  Sum_probs=192.8

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .|.|..|++|+.|-.|++||+..++...+.                      .+.........|.+++|++.+. .|++.
T Consensus       176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------------------fr~l~P~E~h~i~sl~ys~Tg~-~iLvv  232 (641)
T KOG0772|consen  176 DPSGARFVSGSLDYTVKFWDFQGMDASMRS----------------------FRQLQPCETHQINSLQYSVTGD-QILVV  232 (641)
T ss_pred             cCCCceeeeccccceEEEEecccccccchh----------------------hhccCcccccccceeeecCCCC-eEEEE
Confidence            788999999999999999999876543321                      1111223556899999999954 66666


Q ss_pred             ecCCcEEEEECCCCeeeE------------EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee--
Q 010769          286 SADKQVKIWDVAAGKCNL------------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV--  351 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~------------~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--  351 (502)
                      +.....+|+|-.....+.            .-++|...++|.+|+|.....|++++.||++++|++...+.....+.+  
T Consensus       233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence            777889999944322222            225799999999999999899999999999999999876654333332  


Q ss_pred             ----cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC--CeeEEEEcCCCCCEEEEEeC
Q 010769          352 ----AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       352 ----~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~  425 (502)
                          .-.+++++|+|++. ++++|+.||.|.+|+.+....      ......-.+|..  .|+||.||++| ++|++-+.
T Consensus       313 ~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v------~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~  384 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTV------RPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGF  384 (641)
T ss_pred             CCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCccc------ccceEeeeccCCCCceeEEEecccc-chhhhccC
Confidence                33589999999987 699999999999999876532      122344467876  89999999999 99999999


Q ss_pred             CCcEEEEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCccccccccC
Q 010769          426 DKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       426 dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~------dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      |++++|||++..+. ..+.+--...-+-+.++|||+.+ ||++|.+      .|++.+||..+-..+.++.-.
T Consensus       385 D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~  456 (641)
T KOG0772|consen  385 DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS  456 (641)
T ss_pred             CCceeeeeccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence            99999999998652 22222223344567899999998 6888764      467999999988887766543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.5e-27  Score=225.61  Aligned_cols=246  Identities=22%  Similarity=0.331  Sum_probs=207.1

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      |+++||.+||.||.|++|++.......                     .......+..|.+.|+.+....+ ++.|+|+|
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~---------------------s~~~~asme~HsDWVNDiiL~~~-~~tlIS~S   92 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEP---------------------STPYIASMEHHSDWVNDIILCGN-GKTLISAS   92 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCc---------------------ccchhhhhhhhHhHHhhHHhhcC-CCceEEec
Confidence            678899999999999999986422211                     01124456789999999999888 55899999


Q ss_pred             cCCcEEEEECCCC--eeeEEeccCCCCeEEEEE-cCCCCcEEEEEECCCcEEEEeCCCCCC--cc--------ce-Eeec
Q 010769          287 ADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAW-NHHSPQILLSGSFDRSVVMKDARISTH--SG--------FK-WAVA  352 (502)
Q Consensus       287 ~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~--------~~-~~~~  352 (502)
                      .|-+|++|+...+  -|..++..|.+.|.|+++ -++. .++++|+.|+.|.+||+.++..  ..        .. .++.
T Consensus        93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen   93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             CCceEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence            9999999999877  578889999999999999 5554 8999999999999999997632  11        01 1456


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      ..|.+++.++.+ ..+++|+..+.|++||.++.         +.+..+.+|+..|.++..+++| ..++++|.||+|++|
T Consensus       172 ~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  172 DSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLW  240 (735)
T ss_pred             cceeeeecCCcc-eEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCC-CeEeecCCCceEEee
Confidence            679999999976 48999999999999999997         7788888999999999999998 999999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |+...+  |+.++..|...|+++..+|+-.+ +.+|+.||.|..=|+++......++
T Consensus       241 dLgqQr--Cl~T~~vH~e~VWaL~~~~sf~~-vYsG~rd~~i~~Tdl~n~~~~tlic  294 (735)
T KOG0308|consen  241 DLGQQR--CLATYIVHKEGVWALQSSPSFTH-VYSGGRDGNIYRTDLRNPAKSTLIC  294 (735)
T ss_pred             eccccc--eeeeEEeccCceEEEeeCCCcce-EEecCCCCcEEecccCCchhheEee
Confidence            998877  88899999999999999999885 8999999999999998854333333

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=3e-25  Score=222.62  Aligned_cols=231  Identities=14%  Similarity=0.197  Sum_probs=171.1

Q ss_pred             cceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee
Q 010769          193 PLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      .++++|       +|+ +++||+|+.||.|+||++........                   ........+.+|...|.+
T Consensus        77 V~~laf-------sP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------------~i~~p~~~L~gH~~~V~s  130 (568)
T PTZ00420         77 ILDLQF-------NPCFSEILASGSEDLTIRVWEIPHNDESVK-------------------EIKDPQCILKGHKKKISI  130 (568)
T ss_pred             EEEEEE-------cCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------------ccccceEEeecCCCcEEE
Confidence            478888       665 88999999999999999974321000                   001122345689999999


Q ss_pred             EEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee
Q 010769          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  351 (502)
                      ++|+|++..+|++|+.|++|+|||+.+++.+..+. |...|.+++|+|+| .+|++++.|+.|+|||++++........|
T Consensus       131 Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            99999977678899999999999999998887776 56789999999999 88999999999999999998776655566


Q ss_pred             cCCeEE-----EEeCCCCCCEEEEEeCC----CeEEEEECCCCCCCCCCCCCCccEEEe--cCCCCeeEEEEcCCCCCEE
Q 010769          352 AADVES-----LAWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       352 ~~~v~~-----v~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l  420 (502)
                      .+.+.+     ..|++++. ++++++.+    +.|++||++..        ..++..+.  .+.+.+......+.+ .++
T Consensus       209 ~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~--------~~pl~~~~ld~~~~~L~p~~D~~tg-~l~  278 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNT--------TSALVTMSIDNASAPLIPHYDESTG-LIY  278 (568)
T ss_pred             cCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCC--------CCceEEEEecCCccceEEeeeCCCC-CEE
Confidence            665433     23457655 66666655    37999999975        24554443  233333334334445 889


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC
Q 010769          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~  462 (502)
                      ++|+.|++|++|++..+....+..+. +..++.+++|.|...
T Consensus       279 lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence            99999999999999887543333333 667889999999853

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.8e-25  Score=194.78  Aligned_cols=245  Identities=18%  Similarity=0.282  Sum_probs=193.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +++|.+|++++.|.+|+|||...+..+..                           ...+.-.|..+.|... .+.++.+
T Consensus        23 s~~G~~litss~dDsl~LYd~~~g~~~~t---------------------------i~skkyG~~~~~Fth~-~~~~i~s   74 (311)
T KOG1446|consen   23 SDDGLLLITSSEDDSLRLYDSLSGKQVKT---------------------------INSKKYGVDLACFTHH-SNTVIHS   74 (311)
T ss_pred             cCCCCEEEEecCCCeEEEEEcCCCceeeE---------------------------eecccccccEEEEecC-CceEEEc
Confidence            88999999999999999999976443322                           2234456777777665 4566666


Q ss_pred             ec--CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769          286 SA--DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       286 s~--Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  363 (502)
                      +.  |.+|+..++.+.+.++.|.+|...|.+|+.+|-+ ..+++++.|++|++||+|..++.....  ...-..++|+|.
T Consensus        75 Stk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~  151 (311)
T KOG1446|consen   75 STKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPE  151 (311)
T ss_pred             cCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCC
Confidence            66  8899999999999999999999999999999999 899999999999999999887765332  233456789998


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe---cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      |- +|+++.....|++||+|....       .|..++.   ......+.+.|+|+| ++|+.++..+.+++.|.-.+...
T Consensus       152 GL-ifA~~~~~~~IkLyD~Rs~dk-------gPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~  222 (311)
T KOG1446|consen  152 GL-IFALANGSELIKLYDLRSFDK-------GPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVK  222 (311)
T ss_pred             Cc-EEEEecCCCeEEEEEecccCC-------CCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEe
Confidence            64 788887777999999998742       3444443   336778999999999 88888888999999999998854


Q ss_pred             EEEEecCCCCC-EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          441 CIASRNPKAGA-VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       441 ~~~~~~~~~~~-v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      .........+. -...+|+||+++ +.+|+.||+|.+|++.++..+...-+.
T Consensus       223 ~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  223 STFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             eeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            44443333332 257889999996 778999999999999999988776654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=6.1e-26  Score=218.73  Aligned_cols=279  Identities=19%  Similarity=0.331  Sum_probs=215.8

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCC-CCCCEEEE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR-EKGNFMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s-~~~~~la~  214 (502)
                      +.|+.+|..+++-+.. .+++++.++   ++++|.  ....   ....+|...-     ...|+.+.+.+. .++-.|++
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~---t~~vw~--~~~~---~~l~~~~~~~-----~~g~i~~~i~y~e~~~~~l~~   76 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDG---TVKVWA--KKGK---QYLETHAFEG-----PKGFIANSICYAESDKGRLVV   76 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCC---ceeeee--ccCc---ccccceeccc-----CcceeeccceeccccCcceEe
Confidence            4588888887766555 566777676   345554  3332   2222222111     111111111112 24557999


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      |++|..|.+|.+...                           .+...+.+|...|.|++...+ . .++|||.|.++++|
T Consensus        77 g~~D~~i~v~~~~~~---------------------------~P~~~LkgH~snVC~ls~~~~-~-~~iSgSWD~TakvW  127 (745)
T KOG0301|consen   77 GGMDTTIIVFKLSQA---------------------------EPLYTLKGHKSNVCSLSIGED-G-TLISGSWDSTAKVW  127 (745)
T ss_pred             ecccceEEEEecCCC---------------------------CchhhhhccccceeeeecCCc-C-ceEecccccceEEe
Confidence            999999999998753                           334466799999999998777 3 38999999999999


Q ss_pred             ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  374 (502)
                      -.  +++...+.+|+..|+++..-|.+  .++||+.|.+|++|.-  ++....+.+|...|+.+++-+++  .|++++.|
T Consensus       128 ~~--~~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~--~flScsND  199 (745)
T KOG0301|consen  128 RI--GELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--HFLSCSND  199 (745)
T ss_pred             cc--hhhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC--CeEeecCC
Confidence            74  56777799999999999999987  7999999999999987  44555677899999999999865  49999999


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEE
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  454 (502)
                      |.|++|++. +         ..+..+.+|+..|.+++..+++ ..+++++.|++++||+..    .+...+......|++
T Consensus       200 g~Ir~w~~~-g---------e~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWs  264 (745)
T KOG0301|consen  200 GSIRLWDLD-G---------EVLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWS  264 (745)
T ss_pred             ceEEEEecc-C---------ceeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC----ceEEEEecCccceEE
Confidence            999999994 3         7899999999999999977766 899999999999999976    356666656668999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          455 VAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       455 ~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      +.+-++|.  +++|++||.||||.....
T Consensus       265 a~~L~NgD--Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  265 AKVLLNGD--IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             EEEeeCCC--EEEeccCceEEEEEeccc
Confidence            99999998  888999999999998743

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.5e-27  Score=242.30  Aligned_cols=305  Identities=22%  Similarity=0.351  Sum_probs=234.2

Q ss_pred             ccccccCCCc-eEEEEEecCC-------cceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCCCCCEEE
Q 010769          143 EDMTINPNDA-VIVCARNEDD-------VSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA  213 (502)
Q Consensus       143 ~~~~~~p~~~-~l~~~~~~~~-------~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la  213 (502)
                      ..++|+|.+. ++++|...+.       .++++||.++..... ....+..+.  ...-..++.|..+..   ...-+||
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~---~~~GlIa   84 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGS---HSHGLIA   84 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCC---Cccceee
Confidence            3468888887 5666543321       136788877765541 011222111  222235777843311   0113589


Q ss_pred             EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v  293 (502)
                      .|+.||.|.+|+....                     .+............|++.|..|.|++..+++||+|+.+|.|.|
T Consensus        85 GG~edG~I~ly~p~~~---------------------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   85 GGLEDGNIVLYDPASI---------------------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             ccccCCceEEecchhh---------------------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            9999999999998642                     1223344455666899999999999998889999999999999


Q ss_pred             EECCCCeeeEEe--ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec--CCeEEEEeCCCCCCEEE
Q 010769          294 WDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA--ADVESLAWDPHAEHSFV  369 (502)
Q Consensus       294 wd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~  369 (502)
                      ||+++.+.-.++  ....+.|.+|+|+..-.++|++++.+|.+.|||+|..+.+.....+.  ..+..+.|+|+....++
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence            999876544444  22457899999999888899999999999999999886655333332  34789999999888888


Q ss_pred             EEeCCC---eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769          370 VSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       370 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      +++.|.   .|.+||+|..        ..++..+.+|...|.++.|++.++.+|++++.|+.|.+|+..+++  .+..+.
T Consensus       224 ~As~dd~~PviqlWDlR~a--------ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE--vl~~~p  293 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRFA--------SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE--VLGELP  293 (1049)
T ss_pred             eecCCCCCceeEeeccccc--------CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce--EeeecC
Confidence            887654   6999999988        578888899999999999999988999999999999999999988  567777


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      .....++.+.|+|..+.+|++++-+|.|.||.+.+..
T Consensus       294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            7778999999999999889999999999999997765

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=6.3e-26  Score=198.55  Aligned_cols=243  Identities=21%  Similarity=0.320  Sum_probs=186.7

Q ss_pred             CCC-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769          205 DRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       205 ~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      ||| ...+|++|+.||+||+|++.......+                         .....|.++|.+++|+.+ +..++
T Consensus        35 FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-------------------------ka~~~~~~PvL~v~Wsdd-gskVf   88 (347)
T KOG0647|consen   35 FSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-------------------------KAQQSHDGPVLDVCWSDD-GSKVF   88 (347)
T ss_pred             eccccCceEEecccCCceEEEEEecCCcccc-------------------------hhhhccCCCeEEEEEccC-CceEE
Confidence            477 577888999999999999975322111                         133469999999999999 47999


Q ss_pred             EEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCC-cEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769          284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       284 sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p  362 (502)
                      +|+.|+.+++||+.+++ +..+..|.++|.++.|-+... ..|+||+.|++|++||+|...... ....+..+.++..-.
T Consensus        89 ~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~-t~~LPeRvYa~Dv~~  166 (347)
T KOG0647|consen   89 SGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA-TLQLPERVYAADVLY  166 (347)
T ss_pred             eeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee-eeeccceeeehhccC
Confidence            99999999999999995 456778999999999987652 489999999999999999877654 566777777776543


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                        + ++++++.+..|.+|+++++...       .......-.-.+.|++..++. ...+.|+-.|.+-+..+..+.+..-
T Consensus       167 --p-m~vVata~r~i~vynL~n~~te-------~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~n  235 (347)
T KOG0647|consen  167 --P-MAVVATAERHIAVYNLENPPTE-------FKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDN  235 (347)
T ss_pred             --c-eeEEEecCCcEEEEEcCCCcch-------hhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCc
Confidence              3 7889999999999999876321       111111234467889988887 5559999999999999887643333


Q ss_pred             EEecCCC---------CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          443 ASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       443 ~~~~~~~---------~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +++..|.         ..|++++|+|... .|+|+|+||++.+||-.....+..
T Consensus       236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~  288 (347)
T KOG0647|consen  236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKT  288 (347)
T ss_pred             eeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhc
Confidence            4444343         3688999999877 699999999999999876655543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.1e-26  Score=209.18  Aligned_cols=250  Identities=18%  Similarity=0.272  Sum_probs=201.1

Q ss_pred             CCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769          204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      .||++|+|||+++.|.+..||.+...                        ...++.+.+.+|..+|..+.|+|+ .++|+
T Consensus       231 ~FS~nGkyLAsaSkD~Taiiw~v~~d------------------------~~~kl~~tlvgh~~~V~yi~wSPD-dryLl  285 (519)
T KOG0293|consen  231 QFSHNGKYLASASKDSTAIIWIVVYD------------------------VHFKLKKTLVGHSQPVSYIMWSPD-DRYLL  285 (519)
T ss_pred             EEcCCCeeEeeccCCceEEEEEEecC------------------------cceeeeeeeecccCceEEEEECCC-CCeEE
Confidence            35999999999999999999998531                        114455677799999999999999 55888


Q ss_pred             EEecCCcEEEEECCCCeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769          284 SASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       284 sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p  362 (502)
                      +|+.+..+++||+.+|.+.+.+. +|...+++++|.|+| ..+++|+.|+++..||+...............|.+++..+
T Consensus       286 aCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~  364 (519)
T KOG0293|consen  286 ACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY  364 (519)
T ss_pred             ecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC
Confidence            99999999999999999888874 356889999999999 8899999999999999986654433333345699999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      +|. .+++.+.|..|++|+..+.         .. ..+.....+|+++++|.++ +++++.-.+..+++||+...+  .+
T Consensus       365 Dgk-~vl~v~~d~~i~l~~~e~~---------~d-r~lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~--lv  430 (519)
T KOG0293|consen  365 DGK-YVLLVTVDKKIRLYNREAR---------VD-RGLISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENK--LV  430 (519)
T ss_pred             CCc-EEEEEecccceeeechhhh---------hh-hccccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhh--HH
Confidence            987 6777778999999998764         11 2233456789999999998 888888889999999999665  56


Q ss_pred             EEecCCCCC--EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010769          443 ASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       443 ~~~~~~~~~--v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                      ..+.+|...  +..-+|---...++|+|+.|+.|+||+..+++++..+-+|..
T Consensus       431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~  483 (519)
T KOG0293|consen  431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK  483 (519)
T ss_pred             HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence            666676543  444456544433699999999999999999999988887753

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=2.8e-26  Score=201.23  Aligned_cols=289  Identities=14%  Similarity=0.231  Sum_probs=218.0

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecC------CC-----------CCCceeeeeccccCCCcceeeee
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES------DG-----------GDPNLYVHHHIIIPAFPLCMAWL  199 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~------~~-----------~~~~l~~~~~~~~~~~~~~~~w~  199 (502)
                      .|...+.+.+|+|+|.++|+|+.+.   +++|...+..      ..           -.+.||-|-+.+     .++.| 
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~---SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~dev-----n~l~F-  180 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADA---SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEV-----NDLDF-  180 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcc---eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcc-----cceee-
Confidence            4888999999999999999999886   5566655410      00           012344444333     34444 


Q ss_pred             cCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC
Q 010769          200 DCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       200 ~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                            +|....|++|+.|++|++||+......                         ..........+|.+|+|+|. +
T Consensus       181 ------HPre~ILiS~srD~tvKlFDfsK~saK-------------------------rA~K~~qd~~~vrsiSfHPs-G  228 (430)
T KOG0640|consen  181 ------HPRETILISGSRDNTVKLFDFSKTSAK-------------------------RAFKVFQDTEPVRSISFHPS-G  228 (430)
T ss_pred             ------cchhheEEeccCCCeEEEEecccHHHH-------------------------HHHHHhhccceeeeEeecCC-C
Confidence                  899999999999999999999632111                         11112235678999999999 4


Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEe---ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-ee-cCC
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV-AAD  354 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~-~~~  354 (502)
                      .+|+.|..-.++++||+++-+|...-   ..|++.|+++.+++.+ ++.++++.||.|++||--+.+++.... .| ...
T Consensus       229 efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse  307 (430)
T KOG0640|consen  229 EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE  307 (430)
T ss_pred             ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCce
Confidence            58999999999999999998886554   4699999999999999 999999999999999988888765433 33 456


Q ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-----CCCeeEEEEcCCCCCEEEEEe-CCCc
Q 010769          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGS-TDKM  428 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~~l~t~s-~dg~  428 (502)
                      |.+..|..++. ++++++.|..|++|.+.++         +++....+-     ..--+...|+... .+++.-. ..+.
T Consensus       308 vcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~---------R~l~~YtGAg~tgrq~~rtqAvFNhtE-dyVl~pDEas~s  376 (430)
T KOG0640|consen  308 VCSAVFTKNGK-YILSSGKDSTVKLWEISTG---------RMLKEYTGAGTTGRQKHRTQAVFNHTE-DYVLFPDEASNS  376 (430)
T ss_pred             eeeEEEccCCe-EEeecCCcceeeeeeecCC---------ceEEEEecCCcccchhhhhhhhhcCcc-ceEEccccccCc
Confidence            89999999876 8999999999999999987         555555432     1112334566554 4444433 3577


Q ss_pred             EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      +.-||.++.....+.. .+|.+.+..+.-+|.++ .+++|+.|-++++|--+
T Consensus       377 lcsWdaRtadr~~l~s-lgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  377 LCSWDARTADRVALLS-LGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR  426 (430)
T ss_pred             eeeccccchhhhhhcc-cCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence            9999999986444433 47999999999999999 59999999999999644

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=2e-25  Score=204.23  Aligned_cols=283  Identities=17%  Similarity=0.238  Sum_probs=230.6

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..+.++.+.|..+.+++|+.+.     .+-+++...++...++..|.       ..+.|+.+    +++...+++++.|-
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~-----~av~~d~~s~q~l~~~~Gh~-------kki~~v~~----~~~~~~v~~aSad~  283 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDK-----TAVLFDKPSNQILATLKGHT-------KKITSVKF----HKDLDTVITASADE  283 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCC-----ceEEEecchhhhhhhccCcc-------eEEEEEEe----ccchhheeecCCcc
Confidence            5688999999989999999886     45555555443334444443       33445433    78999999999999


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .|+||......+                           ......|..+|+.+..+|. +.||++++.||+..+.|++++
T Consensus       284 ~i~vws~~~~s~---------------------------~~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g  335 (506)
T KOG0289|consen  284 IIRVWSVPLSSE---------------------------PTSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSG  335 (506)
T ss_pred             eEEeeccccccC---------------------------ccccccccccceeeeeccC-CcEEEEecCCceEEEEEccCC
Confidence            999999864321                           1233479999999999999 569999999999999999999


Q ss_pred             eeeEEecc--CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeE
Q 010769          300 KCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       300 ~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i  377 (502)
                      .++.....  ..-.+++.+|||+| .+|.+|..||.|+|||+.++.....+.+|.++|..++|+-+| +++++++.|+.|
T Consensus       336 ~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V  413 (506)
T KOG0289|consen  336 SQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSV  413 (506)
T ss_pred             cEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeE
Confidence            98777653  22458999999999 999999999999999999999888788899999999999865 689999999999


Q ss_pred             EEEECCCCCCCCCCCCCCccEEEecC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEE
Q 010769          378 KGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      ++||+|..         +...++... ..++.++.|.+.| .+|+.++.+=+|++++-.+....++..+..|.+..+++.
T Consensus       414 ~lwDLRKl---------~n~kt~~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~  483 (506)
T KOG0289|consen  414 KLWDLRKL---------KNFKTIQLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVR  483 (506)
T ss_pred             EEEEehhh---------cccceeeccccccceeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceee
Confidence            99999987         344444332 3479999999998 899999888888888877777778888888999999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEC
Q 010769          457 FSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       457 ~spd~~~llasg~~dg~i~vwd~  479 (502)
                      |....++ ++++|.|..++++.+
T Consensus       484 Fg~~aq~-l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  484 FGEHAQY-LASTSMDAILRLYAL  505 (506)
T ss_pred             ecccceE-EeeccchhheEEeec
Confidence            9999885 999999999988864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1e-26  Score=204.05  Aligned_cols=220  Identities=23%  Similarity=0.378  Sum_probs=183.1

Q ss_pred             ccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC-----------------C-eeeEEeccCCCCeEEEEEcCC
Q 010769          259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----------------G-KCNLTLEHHTDKVQAVAWNHH  320 (502)
Q Consensus       259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~-----------------~-~~~~~~~~h~~~v~~l~~~~~  320 (502)
                      ...+..|..++.+.+|+|+ +.++|+||.|..|+|.|+..                 + -.++++..|...|+++.|+|.
T Consensus       105 t~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             eEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            3455689999999999999 56999999999999999861                 1 246788889999999999999


Q ss_pred             CCcEEEEEECCCcEEEEeCCCCCCccc--eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE
Q 010769          321 SPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF  398 (502)
Q Consensus       321 ~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  398 (502)
                      . .+|++|+.|++|++||+........  .+....+|.++.|+|.|. ++++|+.-..+++||+.+.+..      .+..
T Consensus       184 e-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qcf------vsan  255 (430)
T KOG0640|consen  184 E-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCF------VSAN  255 (430)
T ss_pred             h-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEe------eecC
Confidence            9 9999999999999999986554322  234456799999999877 8999999999999999987321      1112


Q ss_pred             EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-CC-CCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010769          399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-PK-AGAVFSVAFSEDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-~~-~~~v~~~~~spd~~~llasg~~dg~i~v  476 (502)
                      .-..|++.|+++.+++.+ ++.+|+|.||.|++||--+++  |+.++. .| ...|.++.|..+++| +.++|.|..+++
T Consensus       256 Pd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r--Cv~t~~~AH~gsevcSa~Ftkn~ky-iLsSG~DS~vkL  331 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR--CVRTIGNAHGGSEVCSAVFTKNGKY-ILSSGKDSTVKL  331 (430)
T ss_pred             cccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH--HHHHHHhhcCCceeeeEEEccCCeE-EeecCCcceeee
Confidence            235689999999999998 999999999999999988877  554442 33 456999999999998 677899999999


Q ss_pred             EECCCCccccccccC
Q 010769          477 WDTLSDAGISNRFSK  491 (502)
Q Consensus       477 wd~~~~~~~~~~~~~  491 (502)
                      |.+.++.++.++.+.
T Consensus       332 WEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  332 WEISTGRMLKEYTGA  346 (430)
T ss_pred             eeecCCceEEEEecC
Confidence            999999999888776

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6.3e-26  Score=218.62  Aligned_cols=248  Identities=21%  Similarity=0.358  Sum_probs=205.2

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      +.+.+.|+++.|+|+|.+|++|...+   .+.||....... .+.+..+|..    ..-|++|         ++..+.+|
T Consensus       214 ~~~~~~vtSv~ws~~G~~LavG~~~g---~v~iwD~~~~k~-~~~~~~~h~~----rvg~laW---------~~~~lssG  276 (484)
T KOG0305|consen  214 SFGEELVTSVKWSPDGSHLAVGTSDG---TVQIWDVKEQKK-TRTLRGSHAS----RVGSLAW---------NSSVLSSG  276 (484)
T ss_pred             ecCCCceEEEEECCCCCEEEEeecCC---eEEEEehhhccc-cccccCCcCc----eeEEEec---------cCceEEEe
Confidence            33478999999999999999999998   445555443332 2344454433    3379999         48899999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.++.|.++|+...+...                          ..+.+|...|..|+|+++ ..+||+|+.|+.+.|||
T Consensus       277 sr~~~I~~~dvR~~~~~~--------------------------~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd  329 (484)
T KOG0305|consen  277 SRDGKILNHDVRISQHVV--------------------------STLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWD  329 (484)
T ss_pred             cCCCcEEEEEEecchhhh--------------------------hhhhcccceeeeeEECCC-CCeeccCCCccceEecc
Confidence            999999999997533221                          136689999999999999 67999999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEE-Ee
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV-SL  372 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~  372 (502)
                      .....++..+..|...|.+++|+|-...+|++|+  .|+.|++||..++..+. .....+.|.+|.|++....++.+ |.
T Consensus       330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~-~vdtgsQVcsL~Wsk~~kEi~sthG~  408 (484)
T KOG0305|consen  330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID-SVDTGSQVCSLIWSKKYKELLSTHGY  408 (484)
T ss_pred             CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec-ccccCCceeeEEEcCCCCEEEEecCC
Confidence            9888899999999999999999999888999975  59999999999877655 55667889999999987544443 46


Q ss_pred             CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ..+.|.+|...+.         ..+..+.+|...|..++++|+| ..+++|+.|.++++|++-...
T Consensus       409 s~n~i~lw~~ps~---------~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  409 SENQITLWKYPSM---------KLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             CCCcEEEEecccc---------ceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCCC
Confidence            6778999999886         7888999999999999999998 999999999999999987653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.5e-25  Score=205.00  Aligned_cols=230  Identities=22%  Similarity=0.321  Sum_probs=195.5

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      +..+.+++|+.|..+.++|...                           .+....+.||+..|+.+.++|+ ...+++++
T Consensus       229 ~s~~~ilTGG~d~~av~~d~~s---------------------------~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aS  280 (506)
T KOG0289|consen  229 PSSSKILTGGEDKTAVLFDKPS---------------------------NQILATLKGHTKKITSVKFHKD-LDTVITAS  280 (506)
T ss_pred             CCCCcceecCCCCceEEEecch---------------------------hhhhhhccCcceEEEEEEeccc-hhheeecC
Confidence            4468999999999999999865                           4445567799999999999999 56899999


Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe--ecCCeEEEEeCCCC
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPHA  364 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~v~~~p~~  364 (502)
                      .|..|+||.............|..+|+.+..+|.| .+|++++.||+..+.|++++........  ..-.+++.+|+|+|
T Consensus       281 ad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg  359 (506)
T KOG0289|consen  281 ADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG  359 (506)
T ss_pred             CcceEEeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc
Confidence            99999999998888888888999999999999999 9999999999999999999887653332  12348999999987


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      - +|.+|+.||.|++||+...         ..+..+.+|.++|..++|+.+| .+|++++.|+.|++||++..+....+.
T Consensus       360 L-ifgtgt~d~~vkiwdlks~---------~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  360 L-IFGTGTPDGVVKIWDLKSQ---------TNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             e-EEeccCCCceEEEEEcCCc---------cccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceee
Confidence            5 8999999999999999987         5778899999999999999998 999999999999999999877433444


Q ss_pred             ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      .... ..+.++.|.+.|.| |+.+|.+=.|++++
T Consensus       429 l~~~-~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  429 LDEK-KEVNSLSFDQSGTY-LGIAGSDLQVYICK  460 (506)
T ss_pred             cccc-ccceeEEEcCCCCe-EEeecceeEEEEEe
Confidence            4333 36999999999997 66677765555555

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=1.2e-25  Score=202.25  Aligned_cols=251  Identities=22%  Similarity=0.349  Sum_probs=200.5

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCC-CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      +..++|+-+..|.|.||++...- .+....            ...+.+..++.+.+.+|...=..|.|||-....|+||.
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~------------~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD  231 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPG------------LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD  231 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCcc------------ccccccccCceEEecccCccceeeecccccccccccCc
Confidence            56778888889999999986321 111100            01233557788889999999999999996445688998


Q ss_pred             cCCcEEEEECCCCee---eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc--cceEeecCCeEEEEeC
Q 010769          287 ADKQVKIWDVAAGKC---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--GFKWAVAADVESLAWD  361 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~v~~~  361 (502)
                      .-+.|++|...++.-   ...|.+|+..|-.|+|+|....+|++|+.||+|+|||+|.+...  .....|.+.|+.+.|+
T Consensus       232 c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWn  311 (440)
T KOG0302|consen  232 CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWN  311 (440)
T ss_pred             cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEcc
Confidence            889999999988753   23467799999999999999899999999999999999987432  2245788999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC---
Q 010769          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ---  438 (502)
Q Consensus       362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~---  438 (502)
                      ..-+ +|++|+.+|+++|||+|+.+.      ..++..+.-|..+|++|.|+|.....|++++.|.+|.+||+....   
T Consensus       312 r~~~-lLasG~DdGt~~iwDLR~~~~------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e  384 (440)
T KOG0302|consen  312 RREP-LLASGGDDGTLSIWDLRQFKS------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE  384 (440)
T ss_pred             CCcc-eeeecCCCceEEEEEhhhccC------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence            9766 899999999999999998754      578999999999999999999887899999999999999986421   


Q ss_pred             --------------eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          439 --------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       439 --------------~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                                    |.+++...+ ...|--+.|++.-+-+|++.+.+| +.||..
T Consensus       385 e~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dG-fnVfkt  437 (440)
T KOG0302|consen  385 EIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT  437 (440)
T ss_pred             hhccccccchhcCCceeEEEecc-hhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence                          223333333 345788999999888888888887 666643

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.2e-26  Score=211.05  Aligned_cols=245  Identities=20%  Similarity=0.276  Sum_probs=198.7

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      -++...|++|+.|..|.+|++....                         ......+.|..+.|+.+.|.++ +..++++
T Consensus       184 l~~sdtlatgg~Dr~Ik~W~v~~~k-------------------------~~~~~tLaGs~g~it~~d~d~~-~~~~iAa  237 (459)
T KOG0288|consen  184 LRNSDTLATGGSDRIIKLWNVLGEK-------------------------SELISTLAGSLGNITSIDFDSD-NKHVIAA  237 (459)
T ss_pred             ccCcchhhhcchhhhhhhhhcccch-------------------------hhhhhhhhccCCCcceeeecCC-CceEEee
Confidence            3667899999999999999986422                         2233355677789999999999 5688889


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  365 (502)
                      +.|+.+++|++...+...++.+|+++|+++.|.... ..+++|+.|.+|++||+....+... .-..+.+..|+.++   
T Consensus       238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt-~l~~S~cnDI~~~~---  312 (459)
T KOG0288|consen  238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKT-VLPGSQCNDIVCSI---  312 (459)
T ss_pred             cCCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecc-ccccccccceEecc---
Confidence            999999999999999999999999999999998877 5599999999999999998666542 22334455565553   


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~  445 (502)
                      ..+++|..|+.|++||.|..         .+......+. .|+++..++++ ..|.+++.|.++.+.|+++......+.-
T Consensus       313 ~~~~SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~sA  381 (459)
T KOG0288|consen  313 SDVISGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTFSA  381 (459)
T ss_pred             eeeeecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEeec
Confidence            36899999999999999987         6677777665 89999999998 7788889999999999999875444433


Q ss_pred             cCC--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010769          446 NPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       446 ~~~--~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                      .+.  ....+.+.|||++.| +|+||.||.|+||++.++++....-....
T Consensus       382 ~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l~~s~s  430 (459)
T KOG0288|consen  382 EGFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVLSLSTS  430 (459)
T ss_pred             cccccccccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEeccCCC
Confidence            221  234789999999997 89999999999999999998766554433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.6e-24  Score=186.01  Aligned_cols=276  Identities=15%  Similarity=0.229  Sum_probs=222.9

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~  214 (502)
                      ..|...|.+++|+-+|..|++|+.++   ++.||..+..... ....+.|+..+     -.+.|-      .++..+|++
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dk---tv~v~n~e~~r~~~~~~~~gh~~sv-----dql~w~------~~~~d~~at   82 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDK---TVSVWNLERDRFRKELVYRGHTDSV-----DQLCWD------PKHPDLFAT   82 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCC---ceEEEEecchhhhhhhcccCCCcch-----hhheeC------CCCCcceEE
Confidence            45778899999999999999999997   5678877654321 12344566444     355563      456889999


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      ++.|.+|++||+....+.....                            .+..=.-+.|+|+ +.+++.++.|..|...
T Consensus        83 as~dk~ir~wd~r~~k~~~~i~----------------------------~~~eni~i~wsp~-g~~~~~~~kdD~it~i  133 (313)
T KOG1407|consen   83 ASGDKTIRIWDIRSGKCTARIE----------------------------TKGENINITWSPD-GEYIAVGNKDDRITFI  133 (313)
T ss_pred             ecCCceEEEEEeccCcEEEEee----------------------------ccCcceEEEEcCC-CCEEEEecCcccEEEE
Confidence            9999999999997644332211                            1222345789999 5699999999999999


Q ss_pred             ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  374 (502)
                      |.++.+.+...+ ..-.+..+.|+-.+ .+|+.....|.|.|.....-+.+.....|+....|+.|+|+|. +|++|+.|
T Consensus       134 d~r~~~~~~~~~-~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsAD  210 (313)
T KOG1407|consen  134 DARTYKIVNEEQ-FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSAD  210 (313)
T ss_pred             Eecccceeehhc-ccceeeeeeecCCC-CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc-eEeecccc
Confidence            999988877765 45678889999666 7777777789999999888888877889999999999999986 89999999


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEE
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  454 (502)
                      ..+.+||+...         .+++.+..+.-+|..++|+.+| ++||+||.|..|-|=++.++.  .+...+ +.++.++
T Consensus       211 AlvSLWD~~EL---------iC~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd--~~~eI~-~~~~t~t  277 (313)
T KOG1407|consen  211 ALVSLWDVDEL---------ICERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGD--RVWEIP-CEGPTFT  277 (313)
T ss_pred             ceeeccChhHh---------hhheeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCC--eEEEee-ccCCcee
Confidence            99999999986         7888899999999999999998 999999999999999999998  455544 6789999


Q ss_pred             EEEcCCCCcEEEEEeCC
Q 010769          455 VAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       455 ~~~spd~~~llasg~~d  471 (502)
                      ++|+|..+ |||-++.|
T Consensus       278 VAWHPk~~-LLAyA~dd  293 (313)
T KOG1407|consen  278 VAWHPKRP-LLAYACDD  293 (313)
T ss_pred             EEecCCCc-eeeEEecC
Confidence            99999998 67777665

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=1.3e-25  Score=208.74  Aligned_cols=286  Identities=17%  Similarity=0.315  Sum_probs=231.8

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccC-CCc-ceeeeecCCCCCCCCCCEEE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIP-AFP-LCMAWLDCPLKDREKGNFMA  213 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~-~~~-~~~~w~~~~~~~s~~~~~la  213 (502)
                      -.|.+-|.+++|+...+.+.+|+..+    ++||.+.....+.+  ..+-++..+ .|. .|.        ..|+|+.|+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGkgc----VKVWdis~pg~k~P--vsqLdcl~rdnyiRSck--------L~pdgrtLi  481 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGKGC----VKVWDISQPGNKSP--VSQLDCLNRDNYIRSCK--------LLPDGRTLI  481 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCCCe----EEEeeccCCCCCCc--cccccccCcccceeeeE--------ecCCCceEE
Confidence            45778889999999999999887653    79998877654221  122222211 111 121        268999999


Q ss_pred             EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v  293 (502)
                      +|+.-.++.|||+....                         ..+...+....-++..|+.+|+ .++.++|+.||.|.|
T Consensus       482 vGGeastlsiWDLAapT-------------------------prikaeltssapaCyALa~spD-akvcFsccsdGnI~v  535 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPT-------------------------PRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAV  535 (705)
T ss_pred             eccccceeeeeeccCCC-------------------------cchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEE
Confidence            99999999999997522                         2222233344567888999999 779999999999999


Q ss_pred             EECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769          294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      ||+.+...++.|++|++.+.||..+++| ..|-+|+.|.+|+.||+|.++... .....+.|.++..+|.+. .+++|..
T Consensus       536 wDLhnq~~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlq-qhdF~SQIfSLg~cP~~d-WlavGMe  612 (705)
T KOG0639|consen  536 WDLHNQTLVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQ-QHDFSSQIFSLGYCPTGD-WLAVGME  612 (705)
T ss_pred             EEcccceeeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhh-hhhhhhhheecccCCCcc-ceeeecc
Confidence            9999999999999999999999999999 889999999999999999887654 556778899999999877 7999999


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      ++.+.+.....          ...+.+..|.+.|.++.|.+.| +++++.+.|+.+..|.+.-+.  .++... ....|.
T Consensus       613 ns~vevlh~sk----------p~kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGa--siFqsk-E~SsVl  678 (705)
T KOG0639|consen  613 NSNVEVLHTSK----------PEKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA--SIFQSK-ESSSVL  678 (705)
T ss_pred             cCcEEEEecCC----------ccceeecccccEEEEEEecccC-ceeeecCchhhhhhccCcccc--ceeecc-ccCcce
Confidence            99999888774          4567788899999999999998 999999999999999998887  344443 457899


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          454 SVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       454 ~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      ++..+.+.+| ++||+.|....||.+
T Consensus       679 sCDIS~ddky-IVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  679 SCDISFDDKY-IVTGSGDKKATVYEV  703 (705)
T ss_pred             eeeeccCceE-EEecCCCcceEEEEE
Confidence            9999999995 999999988888875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=6.1e-25  Score=189.21  Aligned_cols=226  Identities=18%  Similarity=0.302  Sum_probs=196.9

Q ss_pred             ccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769          261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  340 (502)
                      .++||..+++.|.+|.+ +.+|+||+.|.++.||-..+|..+.++.+|++.|+|+....+. ..+++|+.|.++++||+.
T Consensus         5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcC
Confidence            35689999999999999 5699999999999999988999999999999999999999888 899999999999999999


Q ss_pred             CCCCccceEeecCCeEEEEeCCCCCCEEEEEe-----CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       341 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      +++... .+..+..|..+.|++.+. +++.++     ..+.|.++|++.......  ...|...+..+.+.++.+-|.|.
T Consensus        83 tGk~la-~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~--s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   83 TGKQLA-TWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDID--SEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             CCcEEE-EeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhc--ccCceEEecCCccceeeeeeccc
Confidence            999776 788899999999999776 555543     456899999996532111  14678889999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769          416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                      + .+|++|..||.|..||++++.. .+.....|...|+.++++|+..| +++|+.|.+-++||+.+-+.+.+....++-.
T Consensus       159 ~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl~v~Kty~te~PvN  235 (327)
T KOG0643|consen  159 G-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTLEVLKTYTTERPVN  235 (327)
T ss_pred             C-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccCCcce-EEecccCccceeeeccceeeEEEeeeccccc
Confidence            8 9999999999999999999863 56666778889999999999995 9999999999999999998888776665543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.2e-25  Score=203.66  Aligned_cols=254  Identities=19%  Similarity=0.239  Sum_probs=205.3

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+..++.+++.+|+|.-|++.++....-+..  .. .      ..+...........+|...|.+++.+++ +.+||+|
T Consensus       151 s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~--~~-e------v~k~~~~~~k~~r~~h~keil~~avS~D-gkylatg  220 (479)
T KOG0299|consen  151 SPDDKRVFSASKDGTILKWDVLTGKKDRYIIE--RD-E------VLKSHGNPLKESRKGHVKEILTLAVSSD-GKYLATG  220 (479)
T ss_pred             eccccceeecCCCcceeeeehhcCcccccccc--cc-h------hhhhccCCCCcccccccceeEEEEEcCC-CcEEEec
Confidence            79999999999999999999987653311100  00 0      0000101111111489999999999999 5699999


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  365 (502)
                      +.|..|.||+..+.+.++.+.+|.+.|.+++|-... +.|++++.|++|++|++.....+..+++|+..|..+.-..-. 
T Consensus       221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-  298 (479)
T KOG0299|consen  221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-  298 (479)
T ss_pred             CCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc-
Confidence            999999999999999999999999999999998665 789999999999999999888888889999999999876643 


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~  445 (502)
                      ..+.+|+.|+++++|.+..          .....+.+|.+.+-|++|-.+  ..+++||.+|.|.+|++...+|.++...
T Consensus       299 R~vtVGgrDrT~rlwKi~e----------esqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~  366 (479)
T KOG0299|consen  299 RCVTVGGRDRTVRLWKIPE----------ESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRL  366 (479)
T ss_pred             ceEEeccccceeEEEeccc----------cceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeec
Confidence            4677788999999999953          445567788999999999874  6899999999999999999987665544


Q ss_pred             cCC----------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          446 NPK----------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       446 ~~~----------~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      ..+          ...|++++..|... |+|+|+.+|.|++|-+..+-.
T Consensus       367 AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  367 AHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             cccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcc
Confidence            322          12789999999888 899999999999999998844

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=9.9e-25  Score=212.02  Aligned_cols=243  Identities=22%  Similarity=0.353  Sum_probs=210.2

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      |.+...+++|+ .+.|.||+.++..+...+                             ..+-+.+..|.|. ..++++|
T Consensus       382 S~d~~~~~Sga-~~SikiWn~~t~kciRTi-----------------------------~~~y~l~~~Fvpg-d~~Iv~G  430 (888)
T KOG0306|consen  382 SSDSILLASGA-GESIKIWNRDTLKCIRTI-----------------------------TCGYILASKFVPG-DRYIVLG  430 (888)
T ss_pred             ecCceeeeecC-CCcEEEEEccCcceeEEe-----------------------------ccccEEEEEecCC-CceEEEe
Confidence            55666666665 579999999876665432                             2347889999998 5699999


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC------c------cceEeecC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------S------GFKWAVAA  353 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~------~~~~~~~~  353 (502)
                      ...|.+.+||+.+...+.++++|.+.|.+++.+|++ ..+++|+.|.+|++||..--..      .      ........
T Consensus       431 ~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d  509 (888)
T KOG0306|consen  431 TKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED  509 (888)
T ss_pred             ccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence            999999999999999999999999999999999999 8899999999999999752111      0      12234567


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .|.|+.++|++. +++++--|.+|++|-+.+.         +...++.+|.-||.|+.++|++ .+++|||.|.+|+||-
T Consensus       510 dvL~v~~Spdgk-~LaVsLLdnTVkVyflDtl---------KFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWG  578 (888)
T KOG0306|consen  510 DVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTL---------KFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWG  578 (888)
T ss_pred             cEEEEEEcCCCc-EEEEEeccCeEEEEEecce---------eeeeeecccccceeEEeccCCc-CeEEeccCCCceEEec
Confidence            899999999976 8999999999999999987         7788899999999999999998 9999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010769          434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      +.-+.  |-.++.+|...|.++.|.|... ++.++|.|+.|+-||-..-+.++.+.+|...
T Consensus       579 LdFGD--CHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e  636 (888)
T KOG0306|consen  579 LDFGD--CHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE  636 (888)
T ss_pred             cccch--hhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhhhhhheeeccchhe
Confidence            99888  7888899999999999999776 6999999999999999999999888887654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=208.87  Aligned_cols=212  Identities=20%  Similarity=0.260  Sum_probs=181.9

Q ss_pred             cCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC
Q 010769          262 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       262 ~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  341 (502)
                      +....+.|.++.|-.+ +.+||+|...|.|+|+|+.+...++.+.+|+.+|..+.|+|++...|++|+.|+.+++||+.+
T Consensus        64 ~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST  142 (487)
T ss_pred             HHhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence            3346688999999999 559999999999999998887788899999999999999999989999999999999999998


Q ss_pred             CCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEE
Q 010769          342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       342 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                      ........+|...|.|.+|+|..++++++|+-||.|++||+|..        ...+.. ..|..+|.++.+-|.| .+++
T Consensus       143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~--------~~~v~e-lnhg~pVe~vl~lpsg-s~ia  212 (487)
T KOG0310|consen  143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL--------TSRVVE-LNHGCPVESVLALPSG-SLIA  212 (487)
T ss_pred             cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC--------CceeEE-ecCCCceeeEEEcCCC-CEEE
Confidence            87644566889999999999998889999999999999999986        233444 4599999999999987 8888


Q ss_pred             EEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +++. ..|+|||+.++.. .+.....|...|+|+.+..++. .|.+||-|+.+++||+.+.+.+..
T Consensus       213 sAgG-n~vkVWDl~~G~q-ll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~Kvv~s  275 (487)
T KOG0310|consen  213 SAGG-NSVKVWDLTTGGQ-LLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNYKVVHS  275 (487)
T ss_pred             EcCC-CeEEEEEecCCce-ehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccceEEEEe
Confidence            8875 4699999997653 4444555889999999999997 689999999999999877665543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.4e-25  Score=221.78  Aligned_cols=217  Identities=15%  Similarity=0.270  Sum_probs=180.3

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCC---------------------------------------------
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA---------------------------------------------  298 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~---------------------------------------------  298 (502)
                      .|.++|+++.|+++ +.|||+|+.||.|+||.+..                                             
T Consensus       265 ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            89999999999999 56999999999999998754                                             


Q ss_pred             ---------------CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769          299 ---------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       299 ---------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  363 (502)
                                     .++++.|.+|.+.|..|.|+.++  +|++++.|.+|+||++....++. .+.|..-|+||+|+|-
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~-~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLK-VFSHNDFVTCVAFNPV  420 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceee-EEecCCeeEEEEeccc
Confidence                           02234567899999999999875  99999999999999999888776 7899999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      +.++|++|+-||.|+||++...          .+.....-..-|++++|.|+| +..+.|+.+|.+++|++...++..-.
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~----------~Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDK----------KVVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             CCCcEeecccccceEEeecCcC----------eeEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEee
Confidence            9999999999999999999864          333333344889999999998 99999999999999999988754443


Q ss_pred             EecCC------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769          444 SRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       444 ~~~~~------~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                      .+..|      ...|+.++|.|..+--|++.+.|..|||||.+....+..+-+.++..
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~  547 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS  547 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence            33322      23799999998765445566889999999998888777666555544

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.2e-25  Score=205.91  Aligned_cols=280  Identities=18%  Similarity=0.255  Sum_probs=216.2

Q ss_pred             ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCC
Q 010769          152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDE  231 (502)
Q Consensus       152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~  231 (502)
                      .+++++.....  .|.+|.+.....      .+...++|+...|++-       +|.|.||+.|+..|.|++|.+.++..
T Consensus        51 ~yllsaq~~rp--~l~vw~i~k~~~------~~q~~v~Pg~v~al~s-------~n~G~~l~ag~i~g~lYlWelssG~L  115 (476)
T KOG0646|consen   51 EYLLSAQLKRP--LLHVWEILKKDQ------VVQYIVLPGPVHALAS-------SNLGYFLLAGTISGNLYLWELSSGIL  115 (476)
T ss_pred             hheeeecccCc--cccccccCchhh------hhhhcccccceeeeec-------CCCceEEEeecccCcEEEEEeccccH
Confidence            46666665542  455555543332      3356778888888765       78899999999999999999987543


Q ss_pred             CCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC---------CCeee
Q 010769          232 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA---------AGKCN  302 (502)
Q Consensus       232 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~---------~~~~~  302 (502)
                                                 ...+.+|-..|+||.|+.+ +.+|+|||.||.|.+|.+.         +-++.
T Consensus       116 ---------------------------L~v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~  167 (476)
T KOG0646|consen  116 ---------------------------LNVLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL  167 (476)
T ss_pred             ---------------------------HHHHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence                                       3345689999999999999 5699999999999999874         34678


Q ss_pred             EEeccCCCCeEEEEEcCCC-CcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 010769          303 LTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD  381 (502)
Q Consensus       303 ~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d  381 (502)
                      +.|..|+-+|+.+...+.+ ..+++|++.|.++++||+..+.... ....+..+.+++.+|. ...+++|+.+|.|.+.+
T Consensus       168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl-ti~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~  245 (476)
T KOG0646|consen  168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL-TITFPSSIKAVALDPA-ERVVYIGTEEGKIFQNL  245 (476)
T ss_pred             eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE-EEecCCcceeEEEccc-ccEEEecCCcceEEeee
Confidence            8899999999999988763 3689999999999999999886554 6677889999999996 45899999999999998


Q ss_pred             CCCCCCCCC-------CCCCCccEEEecCCC--CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCE
Q 010769          382 IRTAKSDPD-------STSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       382 ~~~~~~~~~-------~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      +.+......       ......+..+.+|..  +|+|++++-+| .+|++|+.||.|+|||+.+.+  ++.++....++|
T Consensus       246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q--~iRtl~~~kgpV  322 (476)
T KOG0646|consen  246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ--CIRTLQTSKGPV  322 (476)
T ss_pred             hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH--HHHHHhhhcccc
Confidence            876542111       111344566778887  99999999998 999999999999999999887  566666567899


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          453 FSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       453 ~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      +.+.+.|-.+-.+..-+..-.+-.|++
T Consensus       323 tnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  323 TNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             ceeEeeccccceecccccCccCCchHh
Confidence            999997765433332333334445544

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=8.6e-25  Score=192.47  Aligned_cols=318  Identities=17%  Similarity=0.256  Sum_probs=241.9

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|.+.|..++.....+.+.+++.+.   +-.||.++.+..  ..-|..|...+    .|+.+       ++.+.+++++
T Consensus       145 ~GHkDGiW~Vaa~~tqpi~gtASADh---TA~iWs~Esg~C--L~~Y~GH~GSV----Nsikf-------h~s~~L~lTa  208 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQPICGTASADH---TARIWSLESGAC--LATYTGHTGSV----NSIKF-------HNSGLLLLTA  208 (481)
T ss_pred             cccccceeeehhhcCCcceeeccccc---ceeEEeeccccc--eeeecccccce----eeEEe-------ccccceEEEc
Confidence            67999999999999999888888886   558888877653  23344554333    45544       7889999999


Q ss_pred             cCCCcEEEeeCCC----CCCCCceeeeCCcchh---hhhh-c-----cccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          216 SMEPAIEIWDLDV----IDEVQPHVILGGIDEE---KKKK-K-----SKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       216 ~~dg~I~iwdl~~----~~~~~~~~~l~~~~~~---~~~~-~-----~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +.|++..||....    .....|.-..+.....   +... .     ........+...+.+|...|.+..|... +..+
T Consensus       209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~  287 (481)
T KOG0300|consen  209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQM  287 (481)
T ss_pred             cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC-ccee
Confidence            9999999998432    1111111111110000   0000 0     0111123445667899999999999987 5689


Q ss_pred             EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-ccceEeecCCeEEEEeC
Q 010769          283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWD  361 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~v~~~  361 (502)
                      +++|.|.+..+||++++.++..+.+|....+.++-+|.. +++++++.|.+.++||+|..-. ...+.+|...|+++.|.
T Consensus       288 vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~  366 (481)
T KOG0300|consen  288 VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN  366 (481)
T ss_pred             eeeeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence            999999999999999999999999999999999999998 9999999999999999995432 34566889999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      .+.  .+++|+.|.+|++||+++.        ..++.++. ..++++.++.+..+ .+|+.-..+..|++||++..+...
T Consensus       367 ~dd--~vVSgSDDrTvKvWdLrNM--------RsplATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaR  434 (481)
T KOG0300|consen  367 TDD--RVVSGSDDRTVKVWDLRNM--------RSPLATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLAR  434 (481)
T ss_pred             cCC--ceeecCCCceEEEeeeccc--------cCcceeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCCCcccc
Confidence            864  5999999999999999988        46676666 56789999999855 688888889999999998876422


Q ss_pred             --EEEecCCCCCEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCCc
Q 010769          442 --IASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       442 --~~~~~~~~~~v~~~~~spd~~~-llasg~~dg~i~vwd~~~~~  483 (502)
                        .....+|...|.|++|..+.+. -|.++|.|..+.-|.+....
T Consensus       435 lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  435 LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             CCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence              2356789899999999765421 16788999999999987643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=8.7e-26  Score=192.55  Aligned_cols=245  Identities=22%  Similarity=0.344  Sum_probs=195.7

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      +.|...|...++..+-...|+|..+=   +-+||.--.+..  ..-+.|..++     -.+       +|+.+.++|++|
T Consensus        56 eghkgavw~~~l~~na~~aasaaadf---takvw~a~tgde--lhsf~hkhiv-----k~~-------af~~ds~~lltg  118 (334)
T KOG0278|consen   56 EGHKGAVWSATLNKNATRAASAAADF---TAKVWDAVTGDE--LHSFEHKHIV-----KAV-------AFSQDSNYLLTG  118 (334)
T ss_pred             eccCcceeeeecCchhhhhhhhcccc---hhhhhhhhhhhh--hhhhhhhhee-----eeE-------Eecccchhhhcc
Confidence            56888898888888877777776653   346665544432  1223343332     233       348899999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +++..+||||++..+.                          +...+.+|++.|..+-|... .+.++|.+.|++||+||
T Consensus       119 g~ekllrvfdln~p~A--------------------------pp~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD  171 (334)
T KOG0278|consen  119 GQEKLLRVFDLNRPKA--------------------------PPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWD  171 (334)
T ss_pred             chHHHhhhhhccCCCC--------------------------CchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEE
Confidence            9999999999975332                          22345689999999999887 56888889999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      .++++.++++. ...+|+++.++++| . +++....+.|.+||..+...+. ....+..|++.+++|.. .++++|+.|.
T Consensus       172 ~rTgt~v~sL~-~~s~VtSlEvs~dG-~-ilTia~gssV~Fwdaksf~~lK-s~k~P~nV~SASL~P~k-~~fVaGged~  246 (334)
T KOG0278|consen  172 HRTGTEVQSLE-FNSPVTSLEVSQDG-R-ILTIAYGSSVKFWDAKSFGLLK-SYKMPCNVESASLHPKK-EFFVAGGEDF  246 (334)
T ss_pred             eccCcEEEEEe-cCCCCcceeeccCC-C-EEEEecCceeEEecccccccee-eccCccccccccccCCC-ceEEecCcce
Confidence            99999999997 57789999999998 4 5666778899999999877654 55677889999999986 5899999999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEE-EecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      .++.||..++         .-+.. ..+|.++|.|+.|+|+| .+.++||.||+|++|.+..++.
T Consensus       247 ~~~kfDy~Tg---------eEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  247 KVYKFDYNTG---------EEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             EEEEEeccCC---------ceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCCc
Confidence            9999999998         33333 48999999999999998 8999999999999999877653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.7e-23  Score=176.01  Aligned_cols=249  Identities=22%  Similarity=0.332  Sum_probs=191.3

Q ss_pred             CCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769          204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      +|+|.|.+.|+|+...++||-.....-.+......            .+..........+.|.+.|.|.+|+|. +.+|+
T Consensus        39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea------------~~~pp~v~~kr~khhkgsiyc~~ws~~-gelia  105 (350)
T KOG0641|consen   39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEA------------AKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIA  105 (350)
T ss_pred             EecCCCceEEeccCCceEEEEccccccCccccccc------------ccCCCeEEeeeccccCccEEEEEecCc-cCeEE
Confidence            34899999999999999999765432221110000            000001111223468999999999999 56999


Q ss_pred             EEecCCcEEEEECCCCee-----eEEeccCCCCeEEEEEcCC---CCcEEEEEE-CCCcEEEEeCCCCCCccceEeecCC
Q 010769          284 SASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHH---SPQILLSGS-FDRSVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       284 sgs~Dg~v~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~~---~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~  354 (502)
                      +||.|++|++.-++...+     -..|..|.+.|..++|..+   ++.+|++++ .|..|++-|...++......+|.+.
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh  185 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH  185 (350)
T ss_pred             ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence            999999999987765433     2356789999999999643   335666654 4778888898888887777888888


Q ss_pred             eEEE-EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe--cC-----CCCeeEEEEcCCCCCEEEEEeCC
Q 010769          355 VESL-AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AH-----DKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       355 v~~v-~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~h-----~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      |.++ .|+   ...|++|+.|.+|++||+|-.         .++..+.  -|     .+.|.+++..|.| ++|++|-.|
T Consensus       186 ilalyswn---~~m~~sgsqdktirfwdlrv~---------~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~d  252 (350)
T KOG0641|consen  186 ILALYSWN---GAMFASGSQDKTIRFWDLRVN---------SCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHAD  252 (350)
T ss_pred             EEEEEEec---CcEEEccCCCceEEEEeeecc---------ceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCC
Confidence            8877 465   348999999999999999976         3444332  12     3679999999998 999999999


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ....+||++.++  ++..+.+|...|.|+.|+|...| |.+++.|..|++-|+..
T Consensus       253 ssc~lydirg~r--~iq~f~phsadir~vrfsp~a~y-llt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  253 SSCMLYDIRGGR--MIQRFHPHSADIRCVRFSPGAHY-LLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CceEEEEeeCCc--eeeeeCCCccceeEEEeCCCceE-EEEecccceEEEeeccc
Confidence            999999999998  68889999999999999999886 77899999999999864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=2.1e-24  Score=218.60  Aligned_cols=251  Identities=21%  Similarity=0.301  Sum_probs=202.1

Q ss_pred             CCCCCEEEEec--CCCcEEEeeCCCCCC-CCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          206 REKGNFMAVGS--MEPAIEIWDLDVIDE-VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       206 s~~~~~la~g~--~dg~I~iwdl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +|+|..+|+|+  .||.++||+.+.... ...                +.............|.+.|+|+.|+|+ +.+|
T Consensus        22 ~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~----------------~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~l   84 (942)
T KOG0973|consen   22 HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE----------------KNENLPKHLCTMDDHDGSVNCVRFSPD-GSYL   84 (942)
T ss_pred             cCCceeEecCCccccccceeeccccccchhhh----------------hhcccchhheeeccccCceeEEEECCC-CCeE
Confidence            89999999999  999999999864221 100                011124455567789999999999999 5699


Q ss_pred             EEEecCCcEEEEECCC------------------CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          283 ASASADKQVKIWDVAA------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      |+||.|+.|.||....                  .+++..+.+|...|..++|+|++ .+|++++.|++|.+|+.++...
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~  163 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFEL  163 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEcccccee
Confidence            9999999999998762                  24678889999999999999988 9999999999999999999988


Q ss_pred             ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec------CCCCeeEEEEcCCCCC
Q 010769          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA------HDKAVCTISYNPLVPN  418 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~sp~~~~  418 (502)
                      ......|.+.|-.+.|.|-|. +|++-+.|++|++|.+...         .....+..      -......+.|+|+| .
T Consensus       164 ~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw---------~i~k~It~pf~~~~~~T~f~RlSWSPDG-~  232 (942)
T KOG0973|consen  164 LKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDW---------GIEKSITKPFEESPLTTFFLRLSWSPDG-H  232 (942)
T ss_pred             eeeeecccccccceEECCccC-eeeeecCCceEEEEEcccc---------eeeEeeccchhhCCCcceeeecccCCCc-C
Confidence            888889999999999999876 8999999999999997664         22233322      23467899999999 8


Q ss_pred             EEEEEeC----CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCC--------C-------Cc-EEEEEeCCCcEEEEE
Q 010769          419 LLATGST----DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED--------S-------PF-VLAIGGSKGKLEIWD  478 (502)
Q Consensus       419 ~l~t~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd--------~-------~~-llasg~~dg~i~vwd  478 (502)
                      +|++...    -.++.|.+-.+.+  .-..+-+|.+++.++.|+|.        |       .| ++|+|+.|++|.||.
T Consensus       233 ~las~nA~n~~~~~~~IieR~tWk--~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~  310 (942)
T KOG0973|consen  233 HLASPNAVNGGKSTIAIIERGTWK--VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN  310 (942)
T ss_pred             eecchhhccCCcceeEEEecCCce--eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence            8887643    3457888776555  56778899999999999983        1       22 789999999999999


Q ss_pred             CCCCccccc
Q 010769          479 TLSDAGISN  487 (502)
Q Consensus       479 ~~~~~~~~~  487 (502)
                      ....+++..
T Consensus       311 T~~~RPl~v  319 (942)
T KOG0973|consen  311 TALPRPLFV  319 (942)
T ss_pred             cCCCCchhh
Confidence            977766543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=7.7e-24  Score=185.99  Aligned_cols=245  Identities=20%  Similarity=0.311  Sum_probs=188.0

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEe-cCCCCcEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILAS  284 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~l~s  284 (502)
                      .+.|+.+|+|+.|++|.|||+.....                       ........+.|.+.|..+.| +|..+..+|+
T Consensus        22 D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~   78 (361)
T KOG2445|consen   22 DFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHDGSIWRVVWAHPEFGQVVAT   78 (361)
T ss_pred             cccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecCCcEEEEEecCccccceEEE
Confidence            56799999999999999999854322                       23444456689999999999 5777889999


Q ss_pred             EecCCcEEEEECC---------CCeeeEEeccCCCCeEEEEEcCCC-CcEEEEEECCCcEEEEeCCCCCCcc--------
Q 010769          285 ASADKQVKIWDVA---------AGKCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSG--------  346 (502)
Q Consensus       285 gs~Dg~v~vwd~~---------~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~--------  346 (502)
                      ||.|+++.||.=.         ......++....+.|+.++|.|.. +-.|++++.||.++||+.-......        
T Consensus        79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI  158 (361)
T ss_pred             EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence            9999999999742         112345666678899999999853 2678999999999999865432211        


Q ss_pred             -----ceEeecCCeEEEEeCCC--CCCEEEEEeCC-----CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769          347 -----FKWAVAADVESLAWDPH--AEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       347 -----~~~~~~~~v~~v~~~p~--~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                           ....+.....|+.|+|.  .+.+|++|+.+     +.++||........     ...+..+..|+.+|+.|+|.|
T Consensus       159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----w~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----WLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----eeeehhcCCCCCcceeeeecc
Confidence                 01124566889999974  23468888766     47888877654210     245667789999999999999


Q ss_pred             CCC---CEEEEEeCCCcEEEEECCCC------------------CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc
Q 010769          415 LVP---NLLATGSTDKMVKLWDLSNN------------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK  473 (502)
Q Consensus       415 ~~~---~~l~t~s~dg~i~vwd~~~~------------------~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~  473 (502)
                      +.+   .+||+++.|| |+||.+...                  ....+..+..|.+.|+.+.|+-.|. +|++.|.||.
T Consensus       234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~  311 (361)
T KOG2445|consen  234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGC  311 (361)
T ss_pred             ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCce
Confidence            743   4799999999 999998741                  1234666889999999999999998 7999999999


Q ss_pred             EEEEECC
Q 010769          474 LEIWDTL  480 (502)
Q Consensus       474 i~vwd~~  480 (502)
                      ||+|...
T Consensus       312 VRLWkan  318 (361)
T KOG2445|consen  312 VRLWKAN  318 (361)
T ss_pred             eeehhhh
Confidence            9999874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=7.1e-25  Score=192.98  Aligned_cols=246  Identities=22%  Similarity=0.329  Sum_probs=206.7

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ....+.+++.|.+.+||.++++.|+.                           .+.||.+.|+++.|++. +.+++++|.
T Consensus       159 tqpi~gtASADhTA~iWs~Esg~CL~---------------------------~Y~GH~GSVNsikfh~s-~~L~lTaSG  210 (481)
T KOG0300|consen  159 TQPICGTASADHTARIWSLESGACLA---------------------------TYTGHTGSVNSIKFHNS-GLLLLTASG  210 (481)
T ss_pred             CCcceeecccccceeEEeecccccee---------------------------eecccccceeeEEeccc-cceEEEccC
Confidence            35589999999999999999866654                           45699999999999998 679999999


Q ss_pred             CCcEEEEECC------C----------------------------------CeeeEEeccCCCCeEEEEEcCCCCcEEEE
Q 010769          288 DKQVKIWDVA------A----------------------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLS  327 (502)
Q Consensus       288 Dg~v~vwd~~------~----------------------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  327 (502)
                      |++..||...      .                                  ..++..+.+|.+.|.+..|-..+ ..+++
T Consensus       211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vT  289 (481)
T KOG0300|consen  211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVT  289 (481)
T ss_pred             CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeee
Confidence            9999999721      0                                  12456778999999999999888 88999


Q ss_pred             EECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769          328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       328 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      ++.|.+..+||+.++.....+.+|....+.++-+|.. .++++++.|.+.++||+|..        ...+..+++|...|
T Consensus       290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea--------I~sV~VFQGHtdtV  360 (481)
T KOG0300|consen  290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA--------IQSVAVFQGHTDTV  360 (481)
T ss_pred             eeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhh--------cceeeeecccccce
Confidence            9999999999999999998889999999999999975 48999999999999999976        47788899999999


Q ss_pred             eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +++.|..+  ..+++|+.|.+|+|||+++.+. .+.++.. ..+++.++.+..++ ++|.--.+..|++||++.....+-
T Consensus       361 TS~vF~~d--d~vVSgSDDrTvKvWdLrNMRs-plATIRt-dS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~RlaRl  435 (481)
T KOG0300|consen  361 TSVVFNTD--DRVVSGSDDRTVKVWDLRNMRS-PLATIRT-DSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLARL  435 (481)
T ss_pred             eEEEEecC--CceeecCCCceEEEeeeccccC-cceeeec-CCccceeEeecCCc-eEEeccCCceEEEEecCCCccccC
Confidence            99999985  5799999999999999999873 3444432 46799999999888 688888888999999977665443


Q ss_pred             cccCCCCCC
Q 010769          488 RFSKYSKPK  496 (502)
Q Consensus       488 ~~~~~~~~~  496 (502)
                      .-..+.+++
T Consensus       436 PrtsRqgHr  444 (481)
T KOG0300|consen  436 PRTSRQGHR  444 (481)
T ss_pred             Ccccccccc
Confidence            334444444

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.6e-24  Score=196.06  Aligned_cols=242  Identities=20%  Similarity=0.266  Sum_probs=187.2

Q ss_pred             CceEEEEEecCCcceeEEEEEecCCCCCCceee-------------------eeccccCCCcceeeeecCCCCCCCCCCE
Q 010769          151 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYV-------------------HHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       151 ~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~-------------------~~~~~~~~~~~~~~w~~~~~~~s~~~~~  211 (502)
                      |+++|.|+.+.   .+.||.++....-.|.+..                   +|.-.    .+.+.|..      .-.+.
T Consensus       192 gNyvAiGtmdp---~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTda----vl~Ls~n~------~~~nV  258 (463)
T KOG0270|consen  192 GNYVAIGTMDP---EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDA----VLALSWNR------NFRNV  258 (463)
T ss_pred             cceEEEeccCc---eeEEeccccccccccceeechhhhhhhhhhcccccccccchHH----HHHHHhcc------cccee
Confidence            78999999987   6799988766542222221                   12111    14566642      24789


Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v  291 (502)
                      ||+||.|.+|.+||++++++..                           .+..|...|.++.|+|..+.+|++||.|++|
T Consensus       259 LaSgsaD~TV~lWD~~~g~p~~---------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V  311 (463)
T KOG0270|consen  259 LASGSADKTVKLWDVDTGKPKS---------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTV  311 (463)
T ss_pred             EEecCCCceEEEEEcCCCCcce---------------------------ehhhcCCceeEEEecCCCceEEEeccccceE
Confidence            9999999999999998755433                           3346999999999999989999999999999


Q ss_pred             EEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC-CccceEeecCCeEEEEeCCCCCCEEEE
Q 010769          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~  370 (502)
                      .+.|++........-...+.|-.++|+|.....++++..||+|+-+|+|... +......|.++|.++++++..++++++
T Consensus       312 ~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t  391 (463)
T KOG0270|consen  312 ALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST  391 (463)
T ss_pred             EeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence            9999985332222222467899999999998999999999999999999874 455566899999999999999999999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      ++.++.|++|++.....       +.+....-.-+...|+++.|+-+.+|+.|+..+.++|||+.+..+
T Consensus       392 ~s~d~~Vklw~~~~~~~-------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  392 ASTDKVVKLWKFDVDSP-------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             ccccceEEEEeecCCCC-------cccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            99999999999976521       222211112234788899998888999999999999999988763

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=1.6e-24  Score=195.00  Aligned_cols=220  Identities=24%  Similarity=0.379  Sum_probs=182.5

Q ss_pred             cccccccCCcccceeeEEecCCC-CcEEEEEecCCcEEEEECC----------------CCeeeEEeccCCCCeEEEEEc
Q 010769          256 SSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVA----------------AGKCNLTLEHHTDKVQAVAWN  318 (502)
Q Consensus       256 ~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~Dg~v~vwd~~----------------~~~~~~~~~~h~~~v~~l~~~  318 (502)
                      ..+.....+|.+.|+.+.-.+.+ ..+.++-+..|.|.||++.                ..+++.++.+|...-..|+|+
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS  220 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS  220 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence            33444455788888888877663 4577777889999999985                235678889999999999999


Q ss_pred             CCCCcEEEEEECCCcEEEEeCCCCCC---ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCC
Q 010769          319 HHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ  395 (502)
Q Consensus       319 ~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  395 (502)
                      |-....|++|..-+.|++|...++.-   ...+..|...|..++|+|....+|++|+.||+|+|||+|.+..       +
T Consensus       221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~-------~  293 (440)
T KOG0302|consen  221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK-------K  293 (440)
T ss_pred             cccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-------c
Confidence            96656799999999999999887542   1234568899999999999888999999999999999998743       4


Q ss_pred             ccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcE
Q 010769          396 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL  474 (502)
Q Consensus       396 ~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i  474 (502)
                      +.....+|.+-|+.|+|+..- .+||+|+.||+++|||++..+. ..+..+..|..+|+++.|+|....+|+++|.|..|
T Consensus       294 ~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi  372 (440)
T KOG0302|consen  294 AAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI  372 (440)
T ss_pred             ceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence            445558999999999999988 4999999999999999998553 35778888999999999999877789999999999


Q ss_pred             EEEECCCCc
Q 010769          475 EIWDTLSDA  483 (502)
Q Consensus       475 ~vwd~~~~~  483 (502)
                      .|||+....
T Consensus       373 tiWDlsvE~  381 (440)
T KOG0302|consen  373 TIWDLSVEA  381 (440)
T ss_pred             EEEEeeccC
Confidence            999997544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=6.1e-24  Score=186.92  Aligned_cols=240  Identities=18%  Similarity=0.247  Sum_probs=184.8

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |+|.++.|++++.||++++|++.......                            ...|..++++++|.+.  ..+++
T Consensus        21 f~~~~~~LLvssWDgslrlYdv~~~~l~~----------------------------~~~~~~plL~c~F~d~--~~~~~   70 (323)
T KOG1036|consen   21 FSPSSSDLLVSSWDGSLRLYDVPANSLKL----------------------------KFKHGAPLLDCAFADE--STIVT   70 (323)
T ss_pred             EcCcCCcEEEEeccCcEEEEeccchhhhh----------------------------heecCCceeeeeccCC--ceEEE
Confidence            37888999999999999999997532211                            1248899999999986  47999


Q ss_pred             EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~  364 (502)
                      |+.||.|+++|++++.... +..|..+|+||.+++.. ..+++|+.|++|++||.|...... .......|.++....  
T Consensus        71 G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v~g--  145 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDVSG--  145 (323)
T ss_pred             eccCceEEEEEecCCccee-eccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccc-ccccCceEEEEeccC--
Confidence            9999999999999887544 55699999999999876 789999999999999999744333 334455788887763  


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCcc-EEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC--eeE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS-FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSC  441 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~--~~~  441 (502)
                       +.|++|+.+..|.+||+|+...        +. ..-..-.-.+.|+++.|++ .-++++|-||.|.+=.+....  ...
T Consensus       146 -~~LvVg~~~r~v~iyDLRn~~~--------~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~sk  215 (323)
T KOG1036|consen  146 -NRLVVGTSDRKVLIYDLRNLDE--------PFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSK  215 (323)
T ss_pred             -CEEEEeecCceEEEEEcccccc--------hhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhh
Confidence             4799999999999999998742        22 1223345678999999976 557778889998875554431  112


Q ss_pred             EEEecCCC---------CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769          442 IASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       442 ~~~~~~~~---------~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      .+.+..|.         .+|++|+|+|-.. .|||||.||.|.+||+.+.+.+.++..
T Consensus       216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rKrl~q~~~  272 (323)
T KOG1036|consen  216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRKRLKQLAK  272 (323)
T ss_pred             ceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcchhhhhhccC
Confidence            33333342         3799999999977 599999999999999999888765443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.1e-24  Score=196.01  Aligned_cols=293  Identities=15%  Similarity=0.225  Sum_probs=222.9

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCC-EEEEecC
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSM  217 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~-~la~g~~  217 (502)
                      ...|++++|||.-.+|++|+.++   .++||-++....   . . -+...+..+|+..+-      |.|+|. .+++++.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~---~lrifqvDGk~N---~-~-lqS~~l~~fPi~~a~------f~p~G~~~i~~s~r  278 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDG---TLRIFQVDGKVN---P-K-LQSIHLEKFPIQKAE------FAPNGHSVIFTSGR  278 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCC---cEEEEEecCccC---h-h-heeeeeccCccceee------ecCCCceEEEeccc
Confidence            35799999999999999999997   678888776654   2 1 122234555553322      268888 9999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCc-ccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      ...++.||+.+....                         ....+.++ ...+.....+++ +++|+..+..|.|.|...
T Consensus       279 rky~ysyDle~ak~~-------------------------k~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLha  332 (514)
T KOG2055|consen  279 RKYLYSYDLETAKVT-------------------------KLKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHA  332 (514)
T ss_pred             ceEEEEeeccccccc-------------------------cccCCCCcccchhheeEecCC-CCeEEEcccCceEEeehh
Confidence            999999999653211                         11112233 245677788898 669999999999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCe--EEEEeCCCCCCEEEEEeCC
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV--ESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~v~~~p~~~~~l~~~~~d  374 (502)
                      .++..+.+++ -.+.|..++|+.++ ..|++++.+|.|.+||++...+.. .+...+.|  +++|.++++. +|++|+..
T Consensus       333 kT~eli~s~K-ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~-rf~D~G~v~gts~~~S~ng~-ylA~GS~~  408 (514)
T KOG2055|consen  333 KTKELITSFK-IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLH-RFVDDGSVHGTSLCISLNGS-YLATGSDS  408 (514)
T ss_pred             hhhhhhheee-eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEE-EEeecCccceeeeeecCCCc-eEEeccCc
Confidence            9999999987 57899999999998 788888889999999999986554 55555544  5667778766 89999999


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEE-EecCCCCC
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIA-SRNPKAGA  451 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~-~~~~~~~~  451 (502)
                      |.|.|||..+......   .+|+..+..-...|++++|+|+. .+||.+|.  ...+++-.+.+.....-+ ......+.
T Consensus       409 GiVNIYd~~s~~~s~~---PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~  484 (514)
T KOG2055|consen  409 GIVNIYDGNSCFASTN---PKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGH  484 (514)
T ss_pred             ceEEEeccchhhccCC---CCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeeccCCCCCCcccc
Confidence            9999999765432222   47888888888999999999998 88888876  567888888765411111 11334567


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       452 v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      |+|++|+|.+.| ||.|...|.+.+|.+.
T Consensus       485 vtc~aFSP~sG~-lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  485 VTCMAFSPNSGY-LAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eEEEEecCCCce-EEeecCCCceeeEeec
Confidence            999999999986 9999999999999874

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=2.6e-24  Score=187.71  Aligned_cols=219  Identities=23%  Similarity=0.393  Sum_probs=183.6

Q ss_pred             CCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe------------eeE---EeccCCCCeEEEEEcCCCCcEEEE
Q 010769          263 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK------------CNL---TLEHHTDKVQAVAWNHHSPQILLS  327 (502)
Q Consensus       263 ~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~------------~~~---~~~~h~~~v~~l~~~~~~~~~l~s  327 (502)
                      ..|.+.|++|...+..+.++++|+.||.|.|||+++..            |+.   .-.+|.-.|.++.|-|-..-+|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            36889999999999878899999999999999997542            110   114688899999999988789999


Q ss_pred             EECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC--CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC
Q 010769          328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK  405 (502)
Q Consensus       328 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~  405 (502)
                      ++.|.++++||..+.+... .+..++.|.+-+|+|-.  ..++++|+.+-.|++.|+..+         .....+.+|..
T Consensus       120 sSFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------s~sH~LsGHr~  189 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------SFSHTLSGHRD  189 (397)
T ss_pred             ccccceEEEeecccceeeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---------cceeeeccccC
Confidence            9999999999999876544 67778889999998853  357888899999999999997         78899999999


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC-------------eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC
Q 010769          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ-------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg  472 (502)
                      .|.++.|+|.....|+||+.||.|++||++...             +..+.....|.+.|++++|+.++.+ +++++.|.
T Consensus       190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~  268 (397)
T KOG4283|consen  190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDD  268 (397)
T ss_pred             ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCcc
Confidence            999999999988899999999999999998641             1122335578889999999999997 78888999


Q ss_pred             cEEEEECCCCccccccccCC
Q 010769          473 KLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       473 ~i~vwd~~~~~~~~~~~~~~  492 (502)
                      .+++|+..+|....+.|+..
T Consensus       269 r~r~wn~~~G~ntl~~~g~~  288 (397)
T KOG4283|consen  269 RIRVWNMESGRNTLREFGPI  288 (397)
T ss_pred             ceEEeecccCcccccccccc
Confidence            99999999988766655543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.4e-23  Score=194.15  Aligned_cols=241  Identities=17%  Similarity=0.239  Sum_probs=193.7

Q ss_pred             CCCEEEEecC-CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          208 KGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      .+.|++++.. .+.|.+|.+...+.+..                           ..--.++|.+|+-+|. +++|+.|.
T Consensus        49 ~~~yllsaq~~rp~l~vw~i~k~~~~~q---------------------------~~v~Pg~v~al~s~n~-G~~l~ag~  100 (476)
T KOG0646|consen   49 NNEYLLSAQLKRPLLHVWEILKKDQVVQ---------------------------YIVLPGPVHALASSNL-GYFLLAGT  100 (476)
T ss_pred             chhheeeecccCccccccccCchhhhhh---------------------------hcccccceeeeecCCC-ceEEEeec
Confidence            3567776654 46899999864322221                           1124578999999999 67888888


Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC---------CCCccceEeecCCeEE
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI---------STHSGFKWAVAADVES  357 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~  357 (502)
                      ..|.|++|.+.+|..+..+.+|-..|+|+.|+-++ .+|+||+.||.|.+|.+..         .........|.-+|+.
T Consensus       101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITD  179 (476)
T KOG0646|consen  101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITD  179 (476)
T ss_pred             ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEE
Confidence            99999999999999999999999999999999999 9999999999999998642         2223334467778998


Q ss_pred             EEeCCC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          358 LAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       358 v~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      +...+. ....+++++.|.++++||+..+         ..+.++. ....+.+++..|.. +.++.|+.+|.|.+.++..
T Consensus       180 l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---------~LLlti~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~  248 (476)
T KOG0646|consen  180 LQIGSGGTNARLYTASEDRTIKLWDLSLG---------VLLLTIT-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFK  248 (476)
T ss_pred             EEecCCCccceEEEecCCceEEEEEeccc---------eeeEEEe-cCCcceeEEEcccc-cEEEecCCcceEEeeehhc
Confidence            888764 2347999999999999999987         4444444 56789999999987 9999999999999988755


Q ss_pred             CC--------------eeEEEEecCCCC--CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          437 NQ--------------PSCIASRNPKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       437 ~~--------------~~~~~~~~~~~~--~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ..              ...+..+.+|.+  .|+|++.+-||. +|++|+.||.++|||+.+.++++++.
T Consensus       249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHh
Confidence            32              123455677877  999999999999 79999999999999999999988765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=2.6e-22  Score=192.03  Aligned_cols=278  Identities=13%  Similarity=0.107  Sum_probs=185.6

Q ss_pred             ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCCCCC
Q 010769          152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVID  230 (502)
Q Consensus       152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~~~~  230 (502)
                      +++++++.++     .|++|+...........++     .-+.++.|       +|+++.+ ++++.++.|++||+....
T Consensus         2 ~~~~s~~~d~-----~v~~~d~~t~~~~~~~~~~-----~~~~~l~~-------~~dg~~l~~~~~~~~~v~~~d~~~~~   64 (300)
T TIGR03866         2 KAYVSNEKDN-----TISVIDTATLEVTRTFPVG-----QRPRGITL-------SKDGKLLYVCASDSDTIQVIDLATGE   64 (300)
T ss_pred             cEEEEecCCC-----EEEEEECCCCceEEEEECC-----CCCCceEE-------CCCCCEEEEEECCCCeEEEEECCCCc
Confidence            5677777666     4444544333111111111     12345555       7888876 667788999999987532


Q ss_pred             CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCC
Q 010769          231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD  310 (502)
Q Consensus       231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~  310 (502)
                      ...                           .+..+. .+..++|+|++..++++++.++.|++||+.+++.+..+.. ..
T Consensus        65 ~~~---------------------------~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~  115 (300)
T TIGR03866        65 VIG---------------------------TLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GV  115 (300)
T ss_pred             EEE---------------------------eccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CC
Confidence            211                           111222 2467899999654555667789999999999888877763 34


Q ss_pred             CeEEEEEcCCCCcEEEEEECCC-cEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 010769          311 KVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP  389 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~  389 (502)
                      .+.+++|+|++ .++++++.++ .+.+||.++..... .......+.+++|+|++..+++++..++.|++||+++.    
T Consensus       116 ~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~----  189 (300)
T TIGR03866       116 EPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVD-NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR----  189 (300)
T ss_pred             CcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEE-EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc----
Confidence            56889999999 7777777665 56778987765433 22334456789999998754455567999999999876    


Q ss_pred             CCCCCCccEEEecC-------CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC
Q 010769          390 DSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       390 ~~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~  462 (502)
                           +.+..+..+       ......++|+|++..++++.+.++.|.+||+.+++...  .. .+...+.+++|+|++.
T Consensus       190 -----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~--~~-~~~~~~~~~~~~~~g~  261 (300)
T TIGR03866       190 -----KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD--YL-LVGQRVWQLAFTPDEK  261 (300)
T ss_pred             -----eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE--EE-EeCCCcceEEECCCCC
Confidence                 333332211       11235688999984444555667789999998876432  22 2335789999999999


Q ss_pred             cEEEEEeCCCcEEEEECCCCccccccc
Q 010769          463 FVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       463 ~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +++++++.+|.|++||+.+++.+.++.
T Consensus       262 ~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       262 YLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            755445678999999999999877664

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1.8e-23  Score=202.03  Aligned_cols=318  Identities=19%  Similarity=0.265  Sum_probs=220.0

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCC---CCceeeeeccccCCCcceeeeecCCCCCCCC----CCEEEE
Q 010769          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG---DPNLYVHHHIIIPAFPLCMAWLDCPLKDREK----GNFMAV  214 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~----~~~la~  214 (502)
                      .-+++|.|+...|.+.-++.     .+|+|+.....   .......|    .+-.+.++-++|.+.-++.    ...+++
T Consensus       327 ~IA~~Fdet~~klscVYndh-----SlYvWDvrD~~kvgk~~s~lyH----S~ciW~Ve~~p~nv~~~~~aclp~~cF~T  397 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDH-----SLYVWDVRDVNKVGKCSSMLYH----SACIWDVENLPCNVHSPTAACLPRGCFTT  397 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCc-----eEEEEeccccccccceeeeeec----cceeeeeccccccccCcccccCCccceeE
Confidence            35788999999999998886     55555433321   11111222    1222444444544432221    334889


Q ss_pred             ecCCCcEEEeeCCCC--CCCCceeeeCCcch--------hhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVI--DEVQPHVILGGIDE--------EKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       215 g~~dg~I~iwdl~~~--~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      ++.|++||+|+++..  ..++...++...-.        .+........--.+-..........|.+|+.+|+ +.+||+
T Consensus       398 CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLAs  476 (1080)
T KOG1408|consen  398 CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLAS  476 (1080)
T ss_pred             ecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cceecc
Confidence            999999999999752  11211122211000        0000000000000111122244567999999999 569999


Q ss_pred             EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCC--CCcEEEEEECCCcEEEEeCCCCC-CccceEeecCCeEE----
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVES----  357 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~----  357 (502)
                      |..-|+++||++..-.....+..|...|.|+.|+.-  +..+|++++.|+.|.+||+...- .....-.|.+.|++    
T Consensus       477 GDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa  556 (1080)
T KOG1408|consen  477 GDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFA  556 (1080)
T ss_pred             cCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEe
Confidence            999999999999999888889999999999999842  33789999999999999986432 12222233333433    


Q ss_pred             ---------------------------------------------EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCC
Q 010769          358 ---------------------------------------------LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST  392 (502)
Q Consensus       358 ---------------------------------------------v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  392 (502)
                                                                   ++..|..+ ++++++.|..|+||++.++       
T Consensus       557 ~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sg-------  628 (1080)
T KOG1408|consen  557 CNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESG-------  628 (1080)
T ss_pred             ecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEecccc-------
Confidence                                                         44445433 7899999999999999988       


Q ss_pred             CCCccEEE---ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769          393 SQQSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       393 ~~~~~~~~---~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~  469 (502)
                        +....+   +.|.+....+...|.| .||+|.+.|+++.++|+.+++  ++....+|...|+.+.|.+|.++ |++.+
T Consensus       629 --Kq~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgE--cvA~m~GHsE~VTG~kF~nDCkH-lISvs  702 (1080)
T KOG1408|consen  629 --KQVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGE--CVAQMTGHSEAVTGVKFLNDCKH-LISVS  702 (1080)
T ss_pred             --ceeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccch--hhhhhcCcchheeeeeecccchh-heeec
Confidence              444444   4577888999999998 999999999999999999998  88899999999999999999996 77888


Q ss_pred             CCCcEEEEECCCCc
Q 010769          470 SKGKLEIWDTLSDA  483 (502)
Q Consensus       470 ~dg~i~vwd~~~~~  483 (502)
                      .||.|.||.+....
T Consensus       703 gDgCIFvW~lp~~m  716 (1080)
T KOG1408|consen  703 GDGCIFVWKLPLTM  716 (1080)
T ss_pred             CCceEEEEECchhH
Confidence            99999999996543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.7e-24  Score=193.97  Aligned_cols=245  Identities=17%  Similarity=0.220  Sum_probs=196.0

Q ss_pred             ceeeeeccccCCCcceeeeecCCCCCCCCC-CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCcccc
Q 010769          180 NLYVHHHIIIPAFPLCMAWLDCPLKDREKG-NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSI  258 (502)
Q Consensus       180 ~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~-~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  258 (502)
                      .|.+|.+.+     .|++-       +|+. ..+|+|+.||.|+|||+...                           ..
T Consensus        61 ~L~gHrdGV-----~~lak-------hp~~ls~~aSGs~DG~VkiWnlsqR---------------------------~~  101 (433)
T KOG0268|consen   61 SLDGHRDGV-----SCLAK-------HPNKLSTVASGSCDGEVKIWNLSQR---------------------------EC  101 (433)
T ss_pred             hcccccccc-----chhhc-------CcchhhhhhccccCceEEEEehhhh---------------------------hh
Confidence            455666655     46554       4543 78999999999999999753                           33


Q ss_pred             ccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769          259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  338 (502)
                      ...+..|.+.|.+|++...   .+++++.|.+|+.|.+.. .+++++-+ ...++.+.-+..+ ..++|++.  .|.|||
T Consensus       102 ~~~f~AH~G~V~Gi~v~~~---~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD  173 (433)
T KOG0268|consen  102 IRTFKAHEGLVRGICVTQT---SFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWD  173 (433)
T ss_pred             hheeecccCceeeEEeccc---ceEEecCCcceeeeeccC-Ccceeeec-ccccccccccccc-ccccccCc--eeeecc
Confidence            3456689999999999873   688999999999999775 46777753 5567778777766 78888875  599999


Q ss_pred             CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      .+...++....-....|.++.|+|....+|+++..|+.|.+||+|+.         .++..+. ....-+.|+|+|.+ .
T Consensus       174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~---------~Pl~KVi-~~mRTN~IswnPea-f  242 (433)
T KOG0268|consen  174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA---------SPLKKVI-LTMRTNTICWNPEA-F  242 (433)
T ss_pred             cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC---------Cccceee-eeccccceecCccc-c
Confidence            98777665444445669999999988888888999999999999997         5555443 23345789999965 8


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      .+++|+.|..++.||++... ..+..+.+|.+.|..+.|+|.|.- +++||.|.+|+||.++.+..
T Consensus       243 nF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~S  306 (433)
T KOG0268|consen  243 NFVAANEDHNLYTYDMRNLS-RPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHS  306 (433)
T ss_pred             ceeeccccccceehhhhhhc-ccchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcc
Confidence            88999999999999999876 356778899999999999999995 99999999999999987654

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=2.7e-23  Score=204.40  Aligned_cols=324  Identities=16%  Similarity=0.266  Sum_probs=242.6

Q ss_pred             CcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCC
Q 010769          129 PYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK  208 (502)
Q Consensus       129 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~  208 (502)
                      +.+.....-|.+.|....|.|....|++++.+.   .+++|+++.+.+..+.|. . .....+.|+|+.+.      ..+
T Consensus       278 kl~~v~~nah~~sv~~~~fl~~epVl~ta~~Dn---Slk~~vfD~~dg~pR~LR-~-R~GHs~Pp~~irfy------~~~  346 (910)
T KOG1539|consen  278 KLINVTRNAHYGSVTGATFLPGEPVLVTAGADN---SLKVWVFDSGDGVPRLLR-S-RGGHSAPPSCIRFY------GSQ  346 (910)
T ss_pred             eeeeeeeccccCCcccceecCCCceEeeccCCC---ceeEEEeeCCCCcchhee-e-ccCCCCCchheeee------ccC
Confidence            333333445889999999999999999999885   899999997665322222 1 12235667999886      457


Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCce-------------------------eeeCCcchhhhhh----ccccC------
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPH-------------------------VILGGIDEEKKKK----KSKKG------  253 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~-------------------------~~l~~~~~~~~~~----~~~~~------  253 (502)
                      |.++.+++.|++.+.+++.....-+..                         ..+.......+.|    ...+.      
T Consensus       347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t  426 (910)
T KOG1539|consen  347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT  426 (910)
T ss_pred             cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence            999999999999999887432111110                         0000000000000    00000      


Q ss_pred             ---Ccccc-cc-----ccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe---ccCCCCeEEEEEcCCC
Q 010769          254 ---KKSSI-KY-----KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHS  321 (502)
Q Consensus       254 ---~~~~~-~~-----~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~  321 (502)
                         +.+.. .+     .++.-...+++++.++- +++.+.|+..|+|-+|++++|-...+|   ..|..+|+.++....+
T Consensus       427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n  505 (910)
T KOG1539|consen  427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN  505 (910)
T ss_pred             EeccCcccccEEecCccccccCcceEEEEEecc-CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC
Confidence               00100 11     11123367889999998 679999999999999999999988888   5899999999999888


Q ss_pred             CcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe
Q 010769          322 PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH  401 (502)
Q Consensus       322 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  401 (502)
                       +.+++++.+|.+.+||........ .+.....+.++..+.... +++++..+-.|+++|+.+.         +.++.+.
T Consensus       506 -~~~vsa~~~Gilkfw~f~~k~l~~-~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~---------kvvR~f~  573 (910)
T KOG1539|consen  506 -RLLVSAGADGILKFWDFKKKVLKK-SLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTR---------KVVREFW  573 (910)
T ss_pred             -ceEEEccCcceEEEEecCCcceee-eeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhh---------hhhHHhh
Confidence             899999999999999998766433 667788888998888655 7889999999999999986         7889999


Q ss_pred             cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC-CcEEEEECC
Q 010769          402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDTL  480 (502)
Q Consensus       402 ~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d-g~i~vwd~~  480 (502)
                      +|...|+.++|||+| ++|++++.|++|++||+.++..  +-.+ .-..+++++.|+|+|.| ||+...| ..|++|--.
T Consensus       574 gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~l--ID~~-~vd~~~~sls~SPngD~-LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  574 GHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTL--IDGL-LVDSPCTSLSFSPNGDF-LATVHVDQNGIYLWSNK  648 (910)
T ss_pred             ccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcce--eeeE-ecCCcceeeEECCCCCE-EEEEEecCceEEEEEch
Confidence            999999999999999 9999999999999999999973  3222 23467999999999996 8888887 679999654


Q ss_pred             C
Q 010769          481 S  481 (502)
Q Consensus       481 ~  481 (502)
                      +
T Consensus       649 s  649 (910)
T KOG1539|consen  649 S  649 (910)
T ss_pred             h
Confidence            3

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=2.1e-23  Score=182.05  Aligned_cols=217  Identities=21%  Similarity=0.327  Sum_probs=173.7

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .|+|+++|+.||.|.|||+......+.-....            +.+....+....+|.-.|.++.|-|-...++.++|.
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~------------k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF  122 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIA------------KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF  122 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhcccee------------heeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence            59999999999999999997544222111110            001111222345899999999999987779999999


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCC--cEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  365 (502)
                      |.+++|||.++.+....|+ ..+.|.+-+|+|-..  .++++|..+-.|++.|+.++.....+.+|...|.+|.|+|...
T Consensus       123 DhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e  201 (397)
T KOG4283|consen  123 DHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSE  201 (397)
T ss_pred             cceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCce
Confidence            9999999999999888887 577899999988542  5778888899999999999999988899999999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCC------CCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSD------PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ..+++|+.||.|++||+|.....      .+....+.+..-.+|.+.|.+++|+.++ .++++++.|..+++|+..+++
T Consensus       202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCc
Confidence            99999999999999999976321      1111123334466899999999999998 999999999999999998875

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.1e-23  Score=201.76  Aligned_cols=286  Identities=17%  Similarity=0.319  Sum_probs=215.9

Q ss_pred             ccccc-CCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010769          144 DMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE  222 (502)
Q Consensus       144 ~~~~~-p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~  222 (502)
                      .++.+ |.+++|.+|+.++   +|++|...........-|      +..+-....|+. ++..-.+|+.|++++.|-+|+
T Consensus        29 ~Lq~da~~~ryLfTgGRDg---~i~~W~~~~d~~~~s~~~------~asme~HsDWVN-DiiL~~~~~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDG---IIRLWSVTQDSNEPSTPY------IASMEHHSDWVN-DIILCGNGKTLISASSDTTVK   98 (735)
T ss_pred             hccccCCCCceEEecCCCc---eEEEeccccccCCcccch------hhhhhhhHhHHh-hHHhhcCCCceEEecCCceEE
Confidence            45555 5577899999887   678887765544211111      111111223421 111124688999999999999


Q ss_pred             EeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEe-cCCCCcEEEEEecCCcEEEEECCCC--
Q 010769          223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASASADKQVKIWDVAAG--  299 (502)
Q Consensus       223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~l~sgs~Dg~v~vwd~~~~--  299 (502)
                      +|+.....                         ......+..|.+-|.||+. -++ ..++|||+-|+.|+|||++++  
T Consensus        99 ~W~~~~~~-------------------------~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~  152 (735)
T KOG0308|consen   99 VWNAHKDN-------------------------TFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTA  152 (735)
T ss_pred             EeecccCc-------------------------chhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcch
Confidence            99987532                         1122345579999999999 555 679999999999999999987  


Q ss_pred             eeeEE--------ec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEE
Q 010769          300 KCNLT--------LE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       300 ~~~~~--------~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  370 (502)
                      +.+.+        +. ++...|.+++.++.+ ..|++|+..+.+++||.++.+.+..+.+|...|.++..+++|. .+++
T Consensus       153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt-~~ls  230 (735)
T KOG0308|consen  153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT-RLLS  230 (735)
T ss_pred             hhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC-eEee
Confidence            22322        22 788899999999999 8999999999999999999998887889999999999999876 7999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCC
Q 010769          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKA  449 (502)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~  449 (502)
                      ++.||+|++||++..         +++.++..|...|.++..+|.- ..+++|+.||.|..=|+++... ..++.   ..
T Consensus       231 ~sSDgtIrlWdLgqQ---------rCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick---~d  297 (735)
T KOG0308|consen  231 ASSDGTIRLWDLGQQ---------RCLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICK---ED  297 (735)
T ss_pred             cCCCceEEeeecccc---------ceeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeec---CC
Confidence            999999999999986         8899999999999999999987 8999999999999999998532 22222   23


Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       450 ~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      .+|..+..+..... +-+++.|+.|+-|-..-
T Consensus       298 aPv~~l~~~~~~~~-~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  298 APVLKLHLHEHDNS-VWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             CchhhhhhccccCC-ceeeeccccceecCCcc
Confidence            45666666643332 34567788888887654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.7e-23  Score=184.34  Aligned_cols=247  Identities=17%  Similarity=0.272  Sum_probs=189.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++.|.+||+|+.+|.|.|||+.+.                           .+...+.+|..+|++|+|+++| .+|+|+
T Consensus        32 s~~G~~lAvGc~nG~vvI~D~~T~---------------------------~iar~lsaH~~pi~sl~WS~dg-r~Llts   83 (405)
T KOG1273|consen   32 SRWGDYLAVGCANGRVVIYDFDTF---------------------------RIARMLSAHVRPITSLCWSRDG-RKLLTS   83 (405)
T ss_pred             ccCcceeeeeccCCcEEEEEcccc---------------------------chhhhhhccccceeEEEecCCC-CEeeee
Confidence            788999999999999999999862                           3344566899999999999995 599999


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe----ecCCeEEEEeC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----VAADVESLAWD  361 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~v~~~  361 (502)
                      |.|..|++||+..|.+++.++ ..++|+.+.|+|...+.+++.-.+..-.+-++..+........    ......+..|.
T Consensus        84 S~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd  162 (405)
T KOG1273|consen   84 SRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD  162 (405)
T ss_pred             cCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccccc
Confidence            999999999999999999997 6889999999998877777777666666666654332221111    11223344688


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC---
Q 010769          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN---  437 (502)
Q Consensus       362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~---  437 (502)
                      +.|. ++++|+..|.+.+|+..+.         +++..+.... ..|..+.++..| .+|++-+.|..|+.|+++.-   
T Consensus       163 r~g~-yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~  231 (405)
T KOG1273|consen  163 RRGK-YIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDE  231 (405)
T ss_pred             CCCC-EEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhccc
Confidence            8765 8999999999999999987         6666666555 788999999988 89999999999999998731   


Q ss_pred             ----CeeEEEEec--CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          438 ----QPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       438 ----~~~~~~~~~--~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                          .+.....+.  .....=.+++|+.+|.|++|+...-..++||.-..|.+++-+.+..
T Consensus       232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK  292 (405)
T ss_pred             CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence                111111111  1122345788999999977766666789999999999987666554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=4.6e-25  Score=213.55  Aligned_cols=222  Identities=25%  Similarity=0.422  Sum_probs=195.6

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      ..++.+++|+.+-.+-+|.+.......                           .+.+|..+|.+|.|++. ..+|++|+
T Consensus        38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~---------------------------S~~~hespIeSl~f~~~-E~Llaags   89 (825)
T KOG0267|consen   38 KSSRSLVTGGEDEKVNLWAIGKPNAIT---------------------------SLTGHESPIESLTFDTS-ERLLAAGS   89 (825)
T ss_pred             ccceeeccCCCceeeccccccCCchhh---------------------------eeeccCCcceeeecCcc-hhhhcccc
Confidence            458899999999999999886432221                           35689999999999999 66999999


Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  366 (502)
                      .+|+|++||+...+.++++.+|...+.++.|+|.+ .++++|+.|+.+++||++...+......|...+.++.|+|+|. 
T Consensus        90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr-  167 (825)
T KOG0267|consen   90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR-  167 (825)
T ss_pred             cCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc-
Confidence            99999999999999999999999999999999999 8889999999999999998888776777888899999999876 


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      +++.|++|..+++||++.+         +....+..|.+.+.++.|+|.. .++++||.|++|++||+++..  .+....
T Consensus       168 ~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe--~I~s~~  235 (825)
T KOG0267|consen  168 WVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE--VISSGK  235 (825)
T ss_pred             eeeccCCcceeeeeccccc---------ccccccccccccccccccCchh-hhhccCCCCceeeeeccceeE--EeeccC
Confidence            8999999999999999987         7788899999999999999987 899999999999999999876  555666


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEeCC
Q 010769          447 PKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~llasg~~d  471 (502)
                      .....|.+.+|+|++. .+++|...
T Consensus       236 ~~~~~v~~~~fn~~~~-~~~~G~q~  259 (825)
T KOG0267|consen  236 PETDGVRSLAFNPDGK-IVLSGEQI  259 (825)
T ss_pred             CccCCceeeeecCCce-eeecCchh
Confidence            6678899999999998 46665544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=3.2e-23  Score=192.64  Aligned_cols=281  Identities=20%  Similarity=0.280  Sum_probs=205.9

Q ss_pred             eEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec--CCCcEEEeeCCCCC
Q 010769          153 VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS--MEPAIEIWDLDVID  230 (502)
Q Consensus       153 ~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~--~dg~I~iwdl~~~~  230 (502)
                      +.++.+.+    .+++|.+.....  ..-|+||.... + ...+.|       +. .++|++++  .|..|++|.-+...
T Consensus         5 l~~aS~gd----~~kl~D~s~~~~--~~~~~~~t~~p-g-~~s~~w-------~~-~n~lvvas~~gdk~~~~~~K~g~~   68 (673)
T KOG4378|consen    5 LHVASTGD----KTKLSDFSDLET--KSEYVHQTAEP-G-DFSFNW-------QR-RNFLVVASMAGDKVMRIKEKDGKT   68 (673)
T ss_pred             eeeeccCC----ceEEeecccccC--ccccccCCCCC-c-ceeeec-------cc-cceEEEeecCCceeEEEecccCCC
Confidence            44444444    368888776554  14456665442 2 456667       22 34455554  56789999754321


Q ss_pred             CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCC
Q 010769          231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD  310 (502)
Q Consensus       231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~  310 (502)
                      ..-|  .                     .....+  +.-.|++.... ..++++|+..++|+|||++...+.+.++.|..
T Consensus        69 ~~Vp--~---------------------~~k~~g--d~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~s  122 (673)
T KOG4378|consen   69 PEVP--R---------------------VRKLTG--DNAFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQS  122 (673)
T ss_pred             Cccc--e---------------------eecccc--chHHHHhhhhc-ceeeeccCcCceeeehhhHHHHHhhhccCCcc
Confidence            1111  1                     111112  23445554444 45899999999999999998778888899999


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee-cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 010769          311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP  389 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~  389 (502)
                      .|+++.++... .+|++++..|-|.|..+.++.....+... ...|.-+.|+|....+|.+++.+|.|.+||+...    
T Consensus       123 tvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~----  197 (673)
T KOG4378|consen  123 TVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM----  197 (673)
T ss_pred             eeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC----
Confidence            99999999888 89999999999999999887765533332 3446689999998888999999999999999876    


Q ss_pred             CCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769          390 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       390 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~  469 (502)
                          .........|..+...|+|+|..+.+|++.+.|+.|.+||++..+......   ...+..+++|.++|.+ |++|.
T Consensus       198 ----sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~-L~aG~  269 (673)
T KOG4378|consen  198 ----SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPLSTVAFSECGTY-LCAGN  269 (673)
T ss_pred             ----CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee---ecCCcceeeecCCceE-EEeec
Confidence                233444578999999999999999999999999999999999766322222   2357899999999985 89999


Q ss_pred             CCCcEEEEECCCCcccccc
Q 010769          470 SKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       470 ~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..|.|..||++..+.....
T Consensus       270 s~G~~i~YD~R~~k~Pv~v  288 (673)
T KOG4378|consen  270 SKGELIAYDMRSTKAPVAV  288 (673)
T ss_pred             CCceEEEEecccCCCCceE
Confidence            9999999999887654333

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=4.8e-23  Score=189.97  Aligned_cols=266  Identities=17%  Similarity=0.239  Sum_probs=202.9

Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccccee
Q 010769          191 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  270 (502)
Q Consensus       191 ~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  270 (502)
                      ...+|++|+++     .+-+++|+|...|.|-+||+...+..                       ......+..|..+|.
T Consensus       187 ~Rit~l~fHPt-----~~~~lva~GdK~G~VG~Wn~~~~~~d-----------------------~d~v~~f~~hs~~Vs  238 (498)
T KOG4328|consen  187 RRITSLAFHPT-----ENRKLVAVGDKGGQVGLWNFGTQEKD-----------------------KDGVYLFTPHSGPVS  238 (498)
T ss_pred             cceEEEEeccc-----CcceEEEEccCCCcEEEEecCCCCCc-----------------------cCceEEeccCCcccc
Confidence            34478888643     24579999999999999999633222                       233345568999999


Q ss_pred             eEEecCCCCcEEEEEecCCcEEEEECCCCee--eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-
Q 010769          271 GLAWNKEFRNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-  347 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-  347 (502)
                      +|.|+|.....+++.|.||+|++-|++.+..  +.++......+.++.|+... ..++.+..=|...+||+|+...... 
T Consensus       239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~  317 (498)
T KOG4328|consen  239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYEN  317 (498)
T ss_pred             ceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchh
Confidence            9999999888999999999999999987643  33333345677888898887 5566666666999999999876433 


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      ..-|...|.+|+++|..+.++++++.|++++|||+|......     .++.....|...|.+..|||.+.. |+|.+.|.
T Consensus       318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~  391 (498)
T KOG4328|consen  318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDN  391 (498)
T ss_pred             hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCCc-eEeeccCC
Confidence            335667999999999999999999999999999999864311     135666789999999999999844 99999999


Q ss_pred             cEEEEECC----CCCeeEEEEecCCC---CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          428 MVKLWDLS----NNQPSCIASRNPKA---GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       428 ~i~vwd~~----~~~~~~~~~~~~~~---~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      .|+|||..    ...+.+........   -......|.|+.. ++++|..-..|-|+|-..++.+..+....
T Consensus       392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~  462 (498)
T KOG4328|consen  392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPE  462 (498)
T ss_pred             ceEEeecccccccCCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence            99999984    33333333322211   1356788999988 68899988899999999888776654443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=1.1e-22  Score=196.49  Aligned_cols=307  Identities=15%  Similarity=0.184  Sum_probs=223.6

Q ss_pred             cccCCCceEEEEEecCCcceeEEEEEecCCCCC-Cceee--------------ee---ccccCCCcceeeeecCCCCCCC
Q 010769          146 TINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYV--------------HH---HIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       146 ~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~--------------~~---~~~~~~~~~~~~w~~~~~~~s~  207 (502)
                      ++.-+.++|++|+.++     -|..|+.....- ..|-.              .|   .....-||-|++.     .|.+
T Consensus       265 CIcVs~r~I~cgCa~g-----~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~-----~Fde  334 (1080)
T KOG1408|consen  265 CICVSSRLIACGCAKG-----MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIAC-----QFDE  334 (1080)
T ss_pred             eeeeecceEEEeeccc-----eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEE-----EecC
Confidence            4445778999999998     444444332200 00000              00   0111234555543     3577


Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC----------
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE----------  277 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~----------  277 (502)
                      ....|.+...|..|+|||+.....+                        ...+.+..|...|+++.--|-          
T Consensus       335 t~~klscVYndhSlYvWDvrD~~kv------------------------gk~~s~lyHS~ciW~Ve~~p~nv~~~~~acl  390 (1080)
T KOG1408|consen  335 TTDKLSCVYNDHSLYVWDVRDVNKV------------------------GKCSSMLYHSACIWDVENLPCNVHSPTAACL  390 (1080)
T ss_pred             CCceEEEEEcCceEEEEeccccccc------------------------cceeeeeeccceeeeeccccccccCcccccC
Confidence            8888999999999999999754332                        222344468888888876551          


Q ss_pred             CCcEEEEEecCCcEEEEECCCCe---eeE----------------------------------EeccCCCCeEEEEEcCC
Q 010769          278 FRNILASASADKQVKIWDVAAGK---CNL----------------------------------TLEHHTDKVQAVAWNHH  320 (502)
Q Consensus       278 ~~~~l~sgs~Dg~v~vwd~~~~~---~~~----------------------------------~~~~h~~~v~~l~~~~~  320 (502)
                      -+..+++||.|++|++|++..+.   ..+                                  ..-...-.+.+++.+|+
T Consensus       391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~  470 (1080)
T KOG1408|consen  391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD  470 (1080)
T ss_pred             CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence            12368999999999999987531   100                                  00012346899999999


Q ss_pred             CCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC--CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE
Q 010769          321 SPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF  398 (502)
Q Consensus       321 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  398 (502)
                      + +.|++|..-|++++|++...........|.+.|.|+.|+.-  +..+|++++.|..|++||+...        ..++.
T Consensus       471 g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--------y~l~q  541 (1080)
T KOG1408|consen  471 G-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--------YDLVQ  541 (1080)
T ss_pred             c-ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--------cchhh
Confidence            9 99999999999999999988888878899999999999752  3458899999999999999876        35666


Q ss_pred             EEecCCCCeeEEEEcCCC------------------------------------------------CCEEEEEeCCCcEE
Q 010769          399 TLHAHDKAVCTISYNPLV------------------------------------------------PNLLATGSTDKMVK  430 (502)
Q Consensus       399 ~~~~h~~~v~~l~~sp~~------------------------------------------------~~~l~t~s~dg~i~  430 (502)
                      ++.+|...|+++.|...|                                                .+++++++.|..|+
T Consensus       542 tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir  621 (1080)
T KOG1408|consen  542 TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR  621 (1080)
T ss_pred             hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence            666677666666653322                                                16899999999999


Q ss_pred             EEECCCCCeeEEEE-ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCCC
Q 010769          431 LWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK  496 (502)
Q Consensus       431 vwd~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  496 (502)
                      ||++.+++....+. -..|.|....+...|.|-| ||++..|.++.++|+.+++++.+.++|.....
T Consensus       622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sgEcvA~m~GHsE~VT  687 (1080)
T KOG1408|consen  622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSGECVAQMTGHSEAVT  687 (1080)
T ss_pred             EEeccccceeeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccchhhhhhcCcchhee
Confidence            99999988433322 2456788999999999997 89999999999999999999999999976543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=2.8e-22  Score=197.26  Aligned_cols=296  Identities=17%  Similarity=0.271  Sum_probs=219.2

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCC-EEEEec
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~-~la~g~  216 (502)
                      +...|+++.-+|--..+|.|..+|     +|.+++...+.. .+...|+   -+..+.+.+       ..||+ .||+|+
T Consensus       201 ~~s~IT~ieqsPaLDVVaiG~~~G-----~ViifNlK~dki-l~sFk~d---~g~VtslSF-------rtDG~p~las~~  264 (910)
T KOG1539|consen  201 FFSRITAIEQSPALDVVAIGLENG-----TVIIFNLKFDKI-LMSFKQD---WGRVTSLSF-------RTDGNPLLASGR  264 (910)
T ss_pred             cccceeEeccCCcceEEEEeccCc-----eEEEEEcccCcE-EEEEEcc---ccceeEEEe-------ccCCCeeEEecc
Confidence            457899999999999999999998     666666555411 1112222   122244443       55665 567777


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      ..|.+.+||++..                          +........|.+.|..+.|.|. ..+|++++.|+.+++|=.
T Consensus       265 ~~G~m~~wDLe~k--------------------------kl~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~vf  317 (910)
T KOG1539|consen  265 SNGDMAFWDLEKK--------------------------KLINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWVF  317 (910)
T ss_pred             CCceEEEEEcCCC--------------------------eeeeeeeccccCCcccceecCC-CceEeeccCCCceeEEEe
Confidence            7899999999731                          2222233478899999999998 779999999999999866


Q ss_pred             CCC----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-------------------------------
Q 010769          297 AAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-------------------------------  341 (502)
Q Consensus       297 ~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-------------------------------  341 (502)
                      .++    +.++.-.+|+.+..|+.|.-....++++++.|++++.+++..                               
T Consensus       318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~  397 (910)
T KOG1539|consen  318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP  397 (910)
T ss_pred             eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence            544    455666799999999999855558888998888777766431                               


Q ss_pred             ----------------------------------CCCccceEeec------CCeEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 010769          342 ----------------------------------STHSGFKWAVA------ADVESLAWDPHAEHSFVVSLEDGTIKGFD  381 (502)
Q Consensus       342 ----------------------------------~~~~~~~~~~~------~~v~~v~~~p~~~~~l~~~~~dg~i~i~d  381 (502)
                                                        ...-.....+.      ..+++++.++-| ++.+.|+..|.|-+|+
T Consensus       398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fN  476 (910)
T KOG1539|consen  398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFN  476 (910)
T ss_pred             ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEE
Confidence                                              11100011111      346778888755 4899999999999999


Q ss_pred             CCCCCCCCCCCCCCccEEE---ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-------------------
Q 010769          382 IRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------------------  439 (502)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-------------------  439 (502)
                      ++++         ....++   ..|.++|++++....+ +.+++++.+|.+++||+....+                   
T Consensus       477 mQSG---------i~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s  546 (910)
T KOG1539|consen  477 MQSG---------IHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS  546 (910)
T ss_pred             cccC---------eeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh
Confidence            9987         333344   6899999999999877 8999999999999999876431                   


Q ss_pred             --------------------eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          440 --------------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       440 --------------------~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                                          ..+..+.+|...|+.++|||||++ |++++.|++|++||+.++.++--+
T Consensus       547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEeccCcceeeeE
Confidence                                023344579999999999999997 888999999999999999987543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.91  E-value=1.6e-22  Score=176.40  Aligned_cols=300  Identities=22%  Similarity=0.329  Sum_probs=217.6

Q ss_pred             cccccccc--CC-CceEEEEEecCC-cceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          141 DLEDMTIN--PN-DAVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       141 ~v~~~~~~--p~-~~~l~~~~~~~~-~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      ...++.|+  |+ .-.||.|+...+ ...++|-.++....   .+........+..++.+.|++-..+..  ..+||+.+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~---e~~~~a~fd~~YP~tK~~wiPd~~g~~--pdlLATs~  120 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG---ELVEDANFDHPYPVTKLMWIPDSKGVY--PDLLATSS  120 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC---ceeccCCCCCCCCccceEecCCccccC--cchhhccc
Confidence            35666666  33 457777775443 23556666665444   444333345666778888975432222  36777765


Q ss_pred             CCCcEEEeeCCCCC-CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          217 MEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       217 ~dg~I~iwdl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                        ..+|+|.+...+ .+.+...|.                   ...-..+..++++..|+.-..++|.++|-|-+..|||
T Consensus       121 --D~LRlWri~~ee~~~~~~~~L~-------------------~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWd  179 (364)
T KOG0290|consen  121 --DFLRLWRIGDEESRVELQSVLN-------------------NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWD  179 (364)
T ss_pred             --CeEEEEeccCcCCceehhhhhc-------------------cCcccccCCcccccccccCCcceeEeecccCeEEEEE
Confidence              589999986422 122211111                   0112246789999999988888999999999999999


Q ss_pred             CCCCe---eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee---cCCeEEEEeCCCCCCEEE
Q 010769          296 VAAGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFV  369 (502)
Q Consensus       296 ~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~l~  369 (502)
                      ++++.   ....+-.|...|..++|...+..+|++.+.||.|++||+|...........   ..+...++|++..+++++
T Consensus       180 ie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymA  259 (364)
T KOG0290|consen  180 IETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMA  259 (364)
T ss_pred             EeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHh
Confidence            99873   355677899999999999988889999999999999999988776655533   456889999999988888


Q ss_pred             EEeC-CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----eEEEE
Q 010769          370 VSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----SCIAS  444 (502)
Q Consensus       370 ~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----~~~~~  444 (502)
                      +-.. ...|.+.|+|..        ..++..+..|.+.|++++|.|..+..|+|++.|..+.+||+.....    ..+..
T Consensus       260 Tf~~dS~~V~iLDiR~P--------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila  331 (364)
T KOG0290|consen  260 TFAMDSNKVVILDIRVP--------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA  331 (364)
T ss_pred             hhhcCCceEEEEEecCC--------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence            7554 457999999988        5889999999999999999999989999999999999999976431    11222


Q ss_pred             ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010769          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~v  476 (502)
                      .. ..+.|+.++|++..+--++.+..+ .+.+
T Consensus       332 y~-a~~EVNqi~Ws~~~~Dwiai~~~k-klei  361 (364)
T KOG0290|consen  332 YT-AGGEVNQIQWSSSQPDWIAICFGK-KLEI  361 (364)
T ss_pred             hh-ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence            22 346799999997665457766543 4443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=9.2e-25  Score=211.47  Aligned_cols=212  Identities=23%  Similarity=0.352  Sum_probs=192.2

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  343 (502)
                      .|...|.|+..-.. ...+++|+.|..+-+|.+....++..|.+|..+|.+|.|++.. .+|++|+.+|+|++||+...+
T Consensus        26 ~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhceeeeecc-ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhh
Confidence            68899999988444 5689999999999999999888888999999999999999998 899999999999999999988


Q ss_pred             CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE
Q 010769          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      ....+.+|...+.+|.|+|.+. +++.|+.|+.+.+||++..         .+.+.+.+|...|.++.|+|+| ++++.|
T Consensus       104 ~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~---------Gc~~~~~s~~~vv~~l~lsP~G-r~v~~g  172 (825)
T KOG0267|consen  104 IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKK---------GCSHTYKSHTRVVDVLRLSPDG-RWVASG  172 (825)
T ss_pred             hhhhhhccccCcceeeeccceE-Eeccccccccceehhhhcc---------CceeeecCCcceeEEEeecCCC-ceeecc
Confidence            8888889999999999999876 7799999999999999975         6888899999999999999998 999999


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +.|..++|||+..++  .+..+..|.+.+.++.|+|..- ++++||.|+++++||+.+-+.+.+.-..
T Consensus       173 ~ed~tvki~d~~agk--~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe~I~s~~~~  237 (825)
T KOG0267|consen  173 GEDNTVKIWDLTAGK--LSKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFEVISSGKPE  237 (825)
T ss_pred             CCcceeeeecccccc--cccccccccccccccccCchhh-hhccCCCCceeeeeccceeEEeeccCCc
Confidence            999999999999988  6778889999999999999875 8999999999999999987766544333

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4e-22  Score=198.37  Aligned_cols=276  Identities=17%  Similarity=0.249  Sum_probs=208.4

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      |...-+.++|.|+|..|++++.+++   +++|.-.... ..|.....+    ....+|+         ...+++|++|+.
T Consensus        12 ht~G~t~i~~d~~gefi~tcgsdg~---ir~~~~~sd~-e~P~ti~~~----g~~v~~i---------a~~s~~f~~~s~   74 (933)
T KOG1274|consen   12 HTGGLTLICYDPDGEFICTCGSDGD---IRKWKTNSDE-EEPETIDIS----GELVSSI---------ACYSNHFLTGSE   74 (933)
T ss_pred             ccCceEEEEEcCCCCEEEEecCCCc---eEEeecCCcc-cCCchhhcc----CceeEEE---------eecccceEEeec
Confidence            6677889999999999999999983   3555443332 122222211    1111333         235779999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      +++|.+|.+..++.-.                           .+...+-++.+++++.+ +.++|.||.|-.|++-++.
T Consensus        75 ~~tv~~y~fps~~~~~---------------------------iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~  126 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDT---------------------------ILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLD  126 (933)
T ss_pred             cceEEEeeCCCCCccc---------------------------eeeeeeccceEEEEecC-CcEEEeecCceeEEEEecc
Confidence            9999999997644321                           12235678999999998 6799999999999999999


Q ss_pred             CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe--------ecCCeEEEEeCCCCCCEEE
Q 010769          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~v~~~p~~~~~l~  369 (502)
                      .......+++|.++|.+|.|+|.+ .+|++.+.||.|++|++..+........        ....+..++|+|++. .|+
T Consensus       127 D~s~~~~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la  204 (933)
T KOG1274|consen  127 DSSQEKVLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLA  204 (933)
T ss_pred             ccchheeecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEE
Confidence            999999999999999999999999 9999999999999999998765432221        134577899999977 577


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCCCCCccEEE--ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010769          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP  447 (502)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~  447 (502)
                      +-..++.|++|+....         ...+.+  ..+...++.++|+|+| .|||+++.+|.|.|||..+..      ...
T Consensus       205 ~~~~d~~Vkvy~r~~w---------e~~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~------~~~  268 (933)
T KOG1274|consen  205 VPPVDNTVKVYSRKGW---------ELQFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE------RHE  268 (933)
T ss_pred             eeccCCeEEEEccCCc---------eeheeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch------hcc
Confidence            7778999999999886         444444  3345559999999998 999999999999999998733      123


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~llasg~~dg~i~vw  477 (502)
                      ....|.+++|.|+.+- +..-...|+..+|
T Consensus       269 ~~~~Vc~~aw~p~~n~-it~~~~~g~~~~~  297 (933)
T KOG1274|consen  269 FKRAVCCEAWKPNANA-ITLITALGTLGVS  297 (933)
T ss_pred             ccceeEEEecCCCCCe-eEEEeeccccccC
Confidence            3467999999999873 5444444544443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=1.7e-21  Score=181.69  Aligned_cols=284  Identities=20%  Similarity=0.334  Sum_probs=211.4

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCC-CCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      .+.|....|+|.+.-|++.+..+   ++..|.+..... +...++..++   ..+.+|+.+       .++|. +++|..
T Consensus       200 ne~v~~a~FHPtd~nliit~Gk~---H~~Fw~~~~~~l~k~~~~fek~e---kk~Vl~v~F-------~engd-viTgDS  265 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITCGKG---HLYFWTLRGGSLVKRQGIFEKRE---KKFVLCVTF-------LENGD-VITGDS  265 (626)
T ss_pred             cceEEEEEeccCCCcEEEEeCCc---eEEEEEccCCceEEEeecccccc---ceEEEEEEE-------cCCCC-EEeecC
Confidence            45678999999998777777665   455554332221 0011122222   266788887       45564 789999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      +|.|.||+....                           +.......|.+.|.+|....+ + .|+||+.|..|..||-.
T Consensus       266 ~G~i~Iw~~~~~---------------------------~~~k~~~aH~ggv~~L~~lr~-G-tllSGgKDRki~~Wd~~  316 (626)
T KOG2106|consen  266 GGNILIWSKGTN---------------------------RISKQVHAHDGGVFSLCMLRD-G-TLLSGGKDRKIILWDDN  316 (626)
T ss_pred             CceEEEEeCCCc---------------------------eEEeEeeecCCceEEEEEecC-c-cEeecCccceEEecccc
Confidence            999999997531                           122222379999999999998 4 57789999999999832


Q ss_pred             CCe----------------------------------------eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 010769          298 AGK----------------------------------------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK  337 (502)
Q Consensus       298 ~~~----------------------------------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  337 (502)
                      -.+                                        ......+|......++.+|.. .++++++.|+.+++|
T Consensus       317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW  395 (626)
T KOG2106|consen  317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLW  395 (626)
T ss_pred             ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEc
Confidence            000                                        001224688889999999998 889999999999999


Q ss_pred             eCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769          338 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      +   ...+........++.|+.|+|.+  .+++|+..|...+.|..+.          .+.+++....++++++|+|+| 
T Consensus       396 ~---~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~----------~lv~~~~d~~~ls~v~ysp~G-  459 (626)
T KOG2106|consen  396 N---DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ----------DLVTIHTDNEQLSVVRYSPDG-  459 (626)
T ss_pred             c---CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccc----------eeEEEEecCCceEEEEEcCCC-
Confidence            9   33344455677889999999976  7999999999999999874          344444458999999999999 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          418 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      .+||.|+.|+.|+||-+..+..........+..+|+.+.|++|++| |.+-+.|-.|..|.....+
T Consensus       460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~-~~~~S~d~eiLyW~~~~~~  524 (626)
T KOG2106|consen  460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF-LVSNSGDYEILYWKPSECK  524 (626)
T ss_pred             CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce-EEeccCceEEEEEccccCc
Confidence            9999999999999999987665444444555589999999999997 7788888899999544433

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.8e-22  Score=175.99  Aligned_cols=261  Identities=14%  Similarity=0.243  Sum_probs=188.2

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...+++++.+  +.++|+|+.+.     .|++|+-..........+|...    ..|+.+..+     ...+.|++|
T Consensus        40 ~aH~~sitavAVs--~~~~aSGssDe-----tI~IYDm~k~~qlg~ll~Hags----itaL~F~~~-----~S~shLlS~  103 (362)
T KOG0294|consen   40 SAHAGSITALAVS--GPYVASGSSDE-----TIHIYDMRKRKQLGILLSHAGS----ITALKFYPP-----LSKSHLLSG  103 (362)
T ss_pred             cccccceeEEEec--ceeEeccCCCC-----cEEEEeccchhhhcceeccccc----eEEEEecCC-----cchhheeee
Confidence            4588889888874  89999999998     5555554433222333344322    256665321     123489999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.||.|.+|+...                           ......+.+|...|+.|+.+|. +.+.++.+.|+.+++||
T Consensus       104 sdDG~i~iw~~~~---------------------------W~~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WN  155 (362)
T KOG0294|consen  104 SDDGHIIIWRVGS---------------------------WELLKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWN  155 (362)
T ss_pred             cCCCcEEEEEcCC---------------------------eEEeeeecccccccceeEecCC-CceEEEEcCCceeeeeh
Confidence            9999999999864                           3444466789999999999999 56888999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      +-+|+....+.- ....+.+.|+|.| .+|+.++.+ .|-+|.+....... ....+..+.|+.|..  ...+++|+.++
T Consensus       156 LV~Gr~a~v~~L-~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~~-~i~~~~r~l~~~~l~--~~~L~vG~d~~  229 (362)
T KOG0294|consen  156 LVRGRVAFVLNL-KNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVFR-EIENPKRILCATFLD--GSELLVGGDNE  229 (362)
T ss_pred             hhcCccceeecc-CCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHhh-hhhccccceeeeecC--CceEEEecCCc
Confidence            999987655542 2334459999999 656666554 58899887655433 223335577777765  34799999999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEc--CCCCCEEEEEeCCCcEEEEECCCCC---eeEEEEecCCCC
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN--PLVPNLLATGSTDKMVKLWDLSNNQ---PSCIASRNPKAG  450 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~~~~~l~t~s~dg~i~vwd~~~~~---~~~~~~~~~~~~  450 (502)
                      .|.+||....         .+...+.+|...|-.+.+-  |.+ .+|+|+|.||.|+|||+....   +..+..... ..
T Consensus       230 ~i~~~D~ds~---------~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~  298 (362)
T KOG0294|consen  230 WISLKDTDSD---------TPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NV  298 (362)
T ss_pred             eEEEeccCCC---------ccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccccccCCcceeEEeec-CC
Confidence            9999999875         7889999999999999843  444 799999999999999998762   223333332 34


Q ss_pred             CEEEEEE
Q 010769          451 AVFSVAF  457 (502)
Q Consensus       451 ~v~~~~~  457 (502)
                      .++|+..
T Consensus       299 RltCl~~  305 (362)
T KOG0294|consen  299 RLTCLRV  305 (362)
T ss_pred             ccceeee
Confidence            5555554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.8e-22  Score=171.94  Aligned_cols=256  Identities=19%  Similarity=0.270  Sum_probs=194.4

Q ss_pred             CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCceeeeeccccCCCcceeeeecCCCCCCC-CCCE
Q 010769          135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNF  211 (502)
Q Consensus       135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~-~~~~  211 (502)
                      +..|++.|-+++..--|+.||++++++   +++|+.......  ....|.+|.     +....+.|.      +| -|++
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~---tVkIf~v~~n~~s~ll~~L~Gh~-----GPVwqv~wa------hPk~G~i   72 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDG---TVKIFEVRNNGQSKLLAELTGHS-----GPVWKVAWA------HPKFGTI   72 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCc---cEEEEEEcCCCCceeeeEecCCC-----CCeeEEeec------ccccCcE
Confidence            456899999999999999999999998   556665554432  112233333     333788886      44 3999


Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEEEEecCCc
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQ  290 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~Dg~  290 (502)
                      ||++++||.|.||.-..+                         .....+....|...|++++|-|.. +.+|++++.||.
T Consensus        73 LAScsYDgkVIiWke~~g-------------------------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~  127 (299)
T KOG1332|consen   73 LASCSYDGKVIIWKEENG-------------------------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGK  127 (299)
T ss_pred             eeEeecCceEEEEecCCC-------------------------chhhhhhhhhhcccceeecccccccceEEEEeeCCCc
Confidence            999999999999997643                         133444566899999999999873 458999999999


Q ss_pred             EEEEECCCC---eeeEEeccCCCCeEEEEEcCC---C----------CcEEEEEECCCcEEEEeCCCCCC--ccceEeec
Q 010769          291 VKIWDVAAG---KCNLTLEHHTDKVQAVAWNHH---S----------PQILLSGSFDRSVVMKDARISTH--SGFKWAVA  352 (502)
Q Consensus       291 v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~---~----------~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~  352 (502)
                      |.|.+++..   ........|.-.|++++|.|.   |          .+.|++|+.|..|+||+.....-  ...+..|.
T Consensus       128 vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~  207 (299)
T KOG1332|consen  128 VSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK  207 (299)
T ss_pred             EEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc
Confidence            999988754   223445789999999999986   2          14699999999999999987532  22356788


Q ss_pred             CCeEEEEeCCCC---CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          353 ADVESLAWDPHA---EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       353 ~~v~~v~~~p~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ..|+.++|.|.-   ...+++++.||+|.||..+.....      -....+......+.+++|++.| ++|+.++.|+.|
T Consensus       208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~------wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkv  280 (299)
T KOG1332|consen  208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP------WKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKV  280 (299)
T ss_pred             hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc------ccccccccCCcceEEEEEeccc-cEEEEecCCcEE
Confidence            999999999963   347999999999999998843211      1122233456789999999998 999999999999


Q ss_pred             EEEECCC
Q 010769          430 KLWDLSN  436 (502)
Q Consensus       430 ~vwd~~~  436 (502)
                      .+|.-..
T Consensus       281 tlwke~~  287 (299)
T KOG1332|consen  281 TLWKENV  287 (299)
T ss_pred             EEEEeCC
Confidence            9997544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=9.6e-23  Score=196.85  Aligned_cols=225  Identities=18%  Similarity=0.248  Sum_probs=189.9

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee-EEecCCCCcEEEEEe
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~l~sgs  286 (502)
                      ++..+++++.||++++|+-..                         +.....+.+.+|.+-|.+ +++-+..+-.|++|+
T Consensus        24 ~~~~i~s~sRd~t~~vw~~~~-------------------------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~   78 (745)
T KOG0301|consen   24 DGVCIISGSRDGTVKVWAKKG-------------------------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGG   78 (745)
T ss_pred             CCeEEeecCCCCceeeeeccC-------------------------cccccceecccCcceeeccceeccccCcceEeec
Confidence            466899999999999998532                         222233445567777777 888764344799999


Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  366 (502)
                      .|++|.+|.+.+..+..++++|...|+|++...++ . +++|+.|.++++|-....  .....+|...|.++..-|.+  
T Consensus        79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l--~~~l~gH~asVWAv~~l~e~--  152 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGEL--VYSLQGHTASVWAVASLPEN--  152 (745)
T ss_pred             ccceEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchhh--hcccCCcchheeeeeecCCC--
Confidence            99999999999999999999999999999988877 3 999999999999987543  33367899999999999865  


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      .+++|+.|.+|++|.-.           ..+.++.+|...|+++++-+.  ..+++|+.||.|++|++ ++.  ++....
T Consensus       153 ~~vTgsaDKtIklWk~~-----------~~l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~-~ge--~l~~~~  216 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKGG-----------TLLKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDL-DGE--VLLEMH  216 (745)
T ss_pred             cEEeccCcceeeeccCC-----------chhhhhccchhheeeeEEecC--CCeEeecCCceEEEEec-cCc--eeeeee
Confidence            79999999999999764           668889999999999999995  46999999999999999 444  688899


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      +|...|++++..+++. +++++|.|++++||+..
T Consensus       217 ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  217 GHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence            9999999999766666 69999999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=4.6e-22  Score=185.03  Aligned_cols=268  Identities=17%  Similarity=0.215  Sum_probs=206.5

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA  220 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~  220 (502)
                      .+.++.|+.... |++++..++ ..+.+|.-+...+   .+-....... .-..|+...       ....|+++|+..+.
T Consensus        36 g~~s~~w~~~n~-lvvas~~gd-k~~~~~~K~g~~~---~Vp~~~k~~g-d~~~Cv~~~-------s~S~y~~sgG~~~~  102 (673)
T KOG4378|consen   36 GDFSFNWQRRNF-LVVASMAGD-KVMRIKEKDGKTP---EVPRVRKLTG-DNAFCVACA-------SQSLYEISGGQSGC  102 (673)
T ss_pred             cceeeeccccce-EEEeecCCc-eeEEEecccCCCC---ccceeecccc-chHHHHhhh-------hcceeeeccCcCce
Confidence            388899998877 556665554 2344444333322   2211111111 122566543       34689999999999


Q ss_pred             EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe
Q 010769          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~  300 (502)
                      |+|||+..                           +.....+.+|++.|+++.++.. ..+||+++..|.|.|..+.++.
T Consensus       103 Vkiwdl~~---------------------------kl~hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~  154 (673)
T KOG4378|consen  103 VKIWDLRA---------------------------KLIHRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQ  154 (673)
T ss_pred             eeehhhHH---------------------------HHHhhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCc
Confidence            99999962                           3444567799999999999988 4599999999999999999998


Q ss_pred             eeEEeccCC-CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-eEeecCCeEEEEeCCCCCCEEEEEeCCCeEE
Q 010769          301 CNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       301 ~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  378 (502)
                      ....|...+ ..|.-+.|+|....+|.+++.+|.|.+||+........ ...|..+...++|+|.++.+|++.+.|..|.
T Consensus       155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~  234 (673)
T KOG4378|consen  155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKIN  234 (673)
T ss_pred             cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEE
Confidence            888887553 45568999999878889999999999999987765442 3468889999999999999999999999999


Q ss_pred             EEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc
Q 010769          379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      +||++..         .....+ ....+.+.++|+++| .+|++|+..|.|..||++..+ ..+..+..|...|++++|-
T Consensus       235 ~yD~~s~---------~s~~~l-~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sah~~sVt~vafq  302 (673)
T KOG4378|consen  235 IYDIRSQ---------ASTDRL-TYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK-APVAVRSAHDASVTRVAFQ  302 (673)
T ss_pred             Eeecccc---------ccccee-eecCCcceeeecCCc-eEEEeecCCceEEEEecccCC-CCceEeeecccceeEEEee
Confidence            9999964         333333 356789999999998 999999999999999999765 4677888899999999998


Q ss_pred             CCC
Q 010769          459 EDS  461 (502)
Q Consensus       459 pd~  461 (502)
                      |.-
T Consensus       303 ~s~  305 (673)
T KOG4378|consen  303 PSP  305 (673)
T ss_pred             ecc
Confidence            764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=8.5e-22  Score=173.88  Aligned_cols=304  Identities=11%  Similarity=0.147  Sum_probs=206.1

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCE-EEE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF-MAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~-la~  214 (502)
                      ..|..+|++++|+.+|+.||+++.++   .++||..+.-..      ..|..+....++.   .+..+.|+|+-+- ++.
T Consensus        83 KgH~~~vt~~~FsSdGK~lat~~~Dr---~Ir~w~~~DF~~------~eHr~~R~nve~d---hpT~V~FapDc~s~vv~  150 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSDGKKLATISGDR---SIRLWDVRDFEN------KEHRCIRQNVEYD---HPTRVVFAPDCKSVVVS  150 (420)
T ss_pred             hccCCceeeeEEcCCCceeEEEeCCc---eEEEEecchhhh------hhhhHhhccccCC---CceEEEECCCcceEEEE
Confidence            46899999999999999999999887   677777765332      2222222222111   1122334788554 444


Q ss_pred             ecCCCcEEEeeCCCCC-CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769          215 GSMEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v  293 (502)
                      .-...++++|.+.... ...++...                ..-.......|.-.|..+-...+ ..+|+|++.|..|.|
T Consensus       151 ~~~g~~l~vyk~~K~~dG~~~~~~v----------------~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~l  213 (420)
T KOG2096|consen  151 VKRGNKLCVYKLVKKTDGSGSHHFV----------------HIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICL  213 (420)
T ss_pred             EccCCEEEEEEeeecccCCCCcccc----------------cccccccchhcccceEEEeecCC-ceEEEEecCCCcEEE
Confidence            4555689999885321 11111000                01111122346666767766655 679999999999999


Q ss_pred             EECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC--------CccceEeecCCeEEEEeCCCCC
Q 010769          294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST--------HSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~v~~~p~~~  365 (502)
                      |++. |+.+.++......-+..+.+|+| +++++++.---|++|.+--.+        ....+.+|.+.|..++|++++.
T Consensus       214 w~lk-Gq~L~~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~  291 (420)
T KOG2096|consen  214 WDLK-GQLLQSIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST  291 (420)
T ss_pred             EecC-CceeeeeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence            9998 99999887777778889999999 999999999999999863211        1223457899999999999865


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE----EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF----TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                       .+++.+.||.+++||+.-.......  .+.+.    .+..-.+.-..++++|.| ..||.+. ...+++|..++++...
T Consensus       292 -r~vtvSkDG~wriwdtdVrY~~~qD--pk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s~-gs~l~~~~se~g~~~~  366 (420)
T KOG2096|consen  292 -RAVTVSKDGKWRIWDTDVRYEAGQD--PKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVSF-GSDLKVFASEDGKDYP  366 (420)
T ss_pred             -eeEEEecCCcEEEeeccceEecCCC--chHhhcCCcchhhcCCCceEEEeCCCC-cEEEeec-CCceEEEEcccCccch
Confidence             7999999999999998654221111  11111    122233444589999988 6555543 4569999998876322


Q ss_pred             EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                       .--..|.+.|.+++|+++|+| ++++| |..+++..
T Consensus       367 -~~e~~h~~~Is~is~~~~g~~-~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  367 -ELEDIHSTTISSISYSSDGKY-IATCG-DRYVRVIR  400 (420)
T ss_pred             -hHHHhhcCceeeEEecCCCcE-Eeeec-ceeeeeec
Confidence             223468899999999999996 77766 55777776

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.5e-22  Score=196.44  Aligned_cols=241  Identities=17%  Similarity=0.256  Sum_probs=193.7

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .|+|.+|++++.||.|++|+...... .|..                         ...|...|.+++...   ++|++|
T Consensus        22 d~~gefi~tcgsdg~ir~~~~~sd~e-~P~t-------------------------i~~~g~~v~~ia~~s---~~f~~~   72 (933)
T KOG1274|consen   22 DPDGEFICTCGSDGDIRKWKTNSDEE-EPET-------------------------IDISGELVSSIACYS---NHFLTG   72 (933)
T ss_pred             cCCCCEEEEecCCCceEEeecCCccc-CCch-------------------------hhccCceeEEEeecc---cceEEe
Confidence            68999999999999999999764321 1111                         112677888888754   489999


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  365 (502)
                      +.+++|.+|.+..+..-..+...+-++.+++|+.+| .+++.|+.|-.|++.++..........+|.++|.++.|+|.+.
T Consensus        73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~  151 (933)
T KOG1274|consen   73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN  151 (933)
T ss_pred             eccceEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC
Confidence            999999999999887665666667899999999999 8999999999999999998888888889999999999999865


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                       ++++++.||.|++|++..+.......  ........ ....++.++|+|++ ..++..+.|+.|++|+.....+.....
T Consensus       152 -fLAvss~dG~v~iw~~~~~~~~~tl~--~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr  227 (933)
T KOG1274|consen  152 -FLAVSSCDGKVQIWDLQDGILSKTLT--GVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLR  227 (933)
T ss_pred             -EEEEEecCceEEEEEcccchhhhhcc--cCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeec
Confidence             89999999999999999873211110  00001111 14567889999998 667777789999999999988655555


Q ss_pred             ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ...+...+..++|+|.|.| ||+++.+|.|.|||+.+
T Consensus       228 ~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  228 DKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT  263 (933)
T ss_pred             ccccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence            5666666999999999997 99999999999999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=1.2e-21  Score=173.84  Aligned_cols=305  Identities=17%  Similarity=0.254  Sum_probs=210.0

Q ss_pred             CCCCccccccccccCC----C-ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCC
Q 010769          135 DDEDSEDLEDMTINPN----D-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKG  209 (502)
Q Consensus       135 ~~~~~~~v~~~~~~p~----~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~  209 (502)
                      .++|...|..++|.+-    . ..+|+++..    .+.+|.+..... ...|....+...+.-.+.++|..- .  ....
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~----rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd-~--~~~~  105 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN----RVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYD-S--NTGN  105 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCc----EEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEec-C--CCCC
Confidence            3567788988888842    2 233333322    466666655441 123333333323333355677421 1  1236


Q ss_pred             CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC
Q 010769          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  289 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg  289 (502)
                      .+||+|+.-|.|+|.|+.+..                           ....+.+|..+|+.|.++|...++|++||.|.
T Consensus       106 p~la~~G~~GvIrVid~~~~~---------------------------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~  158 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQ---------------------------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDH  158 (385)
T ss_pred             eeEEeecceeEEEEEecchhh---------------------------hccceeccCccchhhhcCCCCCcEEEEecCCc
Confidence            689999999999999997533                           33356689999999999999889999999999


Q ss_pred             cEEEEECCCCeeeEEe---ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc--------------------
Q 010769          290 QVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--------------------  346 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--------------------  346 (502)
                      +|++|++++..|+..|   .+|.+.|.++.|++++ .+|++++.|.+|.+|++..++...                    
T Consensus       159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~  237 (385)
T KOG1034|consen  159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP  237 (385)
T ss_pred             eEEEEeccCCeEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence            9999999999999988   5799999999999999 799999999999999998432110                    


Q ss_pred             --------ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCC-CCC----CCCCccEEEecCCCCeeEE--E
Q 010769          347 --------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD-PDS----TSQQSSFTLHAHDKAVCTI--S  411 (502)
Q Consensus       347 --------~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~----~~~~~~~~~~~h~~~v~~l--~  411 (502)
                              ....|...|-|+.|--   .++++-+-++.|..|-....... .+.    .....+..+.-....|.-+  +
T Consensus       238 ~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~  314 (385)
T KOG1034|consen  238 KTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA  314 (385)
T ss_pred             ccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe
Confidence                    0112445566677753   37788788889999987322111 000    0011223333334444444  5


Q ss_pred             EcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe--cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR--NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       412 ~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      |.|.+ .+||.|...|.|.+||++...+....++  ......|...+|+.|+. +|+....+++|.-||..
T Consensus       315 ~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  315 FDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence            56666 8999999999999999998876332222  23345799999999999 46677889999999864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=1.9e-22  Score=186.00  Aligned_cols=208  Identities=20%  Similarity=0.306  Sum_probs=172.8

Q ss_pred             CCcccceeeEEecCCCC-cEEEEEecCCcEEEEECCCC----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 010769          263 GSHTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK  337 (502)
Q Consensus       263 ~~h~~~V~~l~~~~~~~-~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  337 (502)
                      ..|.++|++++|+|... +++|+|..-|+|-+||+.+.    .-+..+..|+.+|.+|.|+|.+...+++.++||+|++-
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~  262 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ  262 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence            35889999999999855 79999999999999999533    23566788999999999999999999999999999999


Q ss_pred             eCCCCCCccceEe--ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          338 DARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       338 d~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      |+...........  ....+..+.|+.... .++.+..=|...+||+|+.        ......+..|...|++++++|.
T Consensus       263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~--------~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  263 DFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTD--------GSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             eecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecC--------CccchhhhhhhcccceeecCCC
Confidence            9987654332222  344566777877655 5667777779999999998        4557777889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeE--EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          416 VPNLLATGSTDKMVKLWDLSNNQPSC--IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      .+.+|||+|.|++++|||++......  +.....|.-.|.++.|||.+.. |+|.+.|..|+|||..
T Consensus       334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence            99999999999999999998754322  4556678899999999999985 8888999999999994

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=1.5e-21  Score=187.02  Aligned_cols=247  Identities=15%  Similarity=0.189  Sum_probs=179.5

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      +.+.|+       |....|++++.|.+|++||+........                         ..+.||...|.+++
T Consensus       104 fDl~wa-------pge~~lVsasGDsT~r~Wdvk~s~l~G~-------------------------~~~~GH~~SvkS~c  151 (720)
T KOG0321|consen  104 FDLKWA-------PGESLLVSASGDSTIRPWDVKTSRLVGG-------------------------RLNLGHTGSVKSEC  151 (720)
T ss_pred             EeeccC-------CCceeEEEccCCceeeeeeeccceeecc-------------------------eeecccccccchhh
Confidence            566774       6677899999999999999976433221                         13458999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCe---------------------------eeEEeccCCCCeEE---EEEcCCCCc
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGK---------------------------CNLTLEHHTDKVQA---VAWNHHSPQ  323 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~---------------------------~~~~~~~h~~~v~~---l~~~~~~~~  323 (502)
                      |.|.....|++|+.||.|.|||++...                           .+..-..+...|.+   +.+..++ .
T Consensus       152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~  230 (720)
T KOG0321|consen  152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-S  230 (720)
T ss_pred             hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-c
Confidence            999999999999999999999986321                           01112234445555   5555666 6


Q ss_pred             EEEEEEC-CCcEEEEeCCCCCCccceE--------ee---cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC
Q 010769          324 ILLSGSF-DRSVVMKDARISTHSGFKW--------AV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS  391 (502)
Q Consensus       324 ~l~s~~~-dg~i~vwd~~~~~~~~~~~--------~~---~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  391 (502)
                      .|++++. |+.|+|||+|.........        .+   .-.+.++.....|. ++++.+.|+.|++|+++....    
T Consensus       231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~----  305 (720)
T KOG0321|consen  231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSI----  305 (720)
T ss_pred             eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCc----
Confidence            7888777 9999999999765432111        11   33577888888777 455555699999999998743    


Q ss_pred             CCCCccEEEecCCCC--eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769          392 TSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       392 ~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~  469 (502)
                         .++..+.++...  -..-..+|++ .+|++|+.|...++|.+.+... ....+.+|.-.|++++|.|..--=+++++
T Consensus       306 ---sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~t~v~TcS  380 (720)
T KOG0321|consen  306 ---SPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSATTPVATCS  380 (720)
T ss_pred             ---CchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccCCCceeec
Confidence               445555444321  1223467887 9999999999999999988763 45566789999999999886433377789


Q ss_pred             CCCcEEEEECCCCc
Q 010769          470 SKGKLEIWDTLSDA  483 (502)
Q Consensus       470 ~dg~i~vwd~~~~~  483 (502)
                      .|.+++||++..+-
T Consensus       381 dD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  381 DDFRVKIWRLSNGL  394 (720)
T ss_pred             cCcceEEEeccCch
Confidence            99999999996544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=1.3e-21  Score=187.32  Aligned_cols=255  Identities=20%  Similarity=0.243  Sum_probs=182.4

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      .....||++..+|.|.++|.....-.                     -..+.......|..+|..+.|-| +...|++++
T Consensus        62 n~eHiLavadE~G~i~l~dt~~~~fr---------------------~ee~~lk~~~aH~nAifDl~wap-ge~~lVsas  119 (720)
T KOG0321|consen   62 NKEHILAVADEDGGIILFDTKSIVFR---------------------LEERQLKKPLAHKNAIFDLKWAP-GESLLVSAS  119 (720)
T ss_pred             CccceEEEecCCCceeeecchhhhcc---------------------hhhhhhcccccccceeEeeccCC-CceeEEEcc
Confidence            35788999999999999998632111                     01222334567999999999999 588999999


Q ss_pred             cCCcEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc------------------
Q 010769          287 ADKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------------------  346 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------------------  346 (502)
                      .|.++++||+.+++++..  +.+|.+.|.+++|.|.++..|++|+.||.|.|||+|......                  
T Consensus       120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence            999999999999988776  889999999999999999999999999999999998433100                  


Q ss_pred             ---------ceEeecCC----eEEEEeCCCCCCEEEEEeC-CCeEEEEECCCCCCCCCCCCCCccEEEecC---CCCeeE
Q 010769          347 ---------FKWAVAAD----VESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---DKAVCT  409 (502)
Q Consensus       347 ---------~~~~~~~~----v~~v~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h---~~~v~~  409 (502)
                               ....+...    |+.+.| .+.. .|++++. |+.|++||+|+........ ......+..|   ...+++
T Consensus       200 skp~~kr~~k~kA~s~ti~ssvTvv~f-kDe~-tlaSaga~D~~iKVWDLRk~~~~~r~e-p~~~~~~~t~skrs~G~~n  276 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAASNTIFSSVTVVLF-KDES-TLASAGAADSTIKVWDLRKNYTAYRQE-PRGSDKYPTHSKRSVGQVN  276 (720)
T ss_pred             CchhhccccccccccCceeeeeEEEEE-eccc-eeeeccCCCcceEEEeecccccccccC-CCcccCccCcccceeeeEE
Confidence                     00011222    444444 4434 6776665 9999999999874322210 1222333334   346788


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCC--EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          410 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       410 l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +.....|..++|+|. |++|++|++.......+..+.++...  -..-..+|++.+ |++|+.|...++|.+.+-+.-..
T Consensus       277 L~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgSsd~~ayiw~vs~~e~~~~  354 (720)
T KOG0321|consen  277 LILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGSSDEQAYIWVVSSPEAPPA  354 (720)
T ss_pred             EEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce-EeccCCCcceeeeeecCccCChh
Confidence            888888855555555 99999999998765455555444321  223346899997 88999999999999988765443


Q ss_pred             c
Q 010769          488 R  488 (502)
Q Consensus       488 ~  488 (502)
                      +
T Consensus       355 ~  355 (720)
T KOG0321|consen  355 L  355 (720)
T ss_pred             h
Confidence            3

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4e-21  Score=169.00  Aligned_cols=266  Identities=17%  Similarity=0.305  Sum_probs=191.0

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCcee-----eeeccccCCCcceeeeecCCCCCCCC-C
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY-----VHHHIIIPAFPLCMAWLDCPLKDREK-G  209 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~w~~~~~~~s~~-~  209 (502)
                      ..|.+-|.++.|.+-|+.+|+++.+.   +++||.++...+   +..     .-|+..    ...+.|.      +|. |
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq---~vkI~d~~~~s~---~W~~Ts~Wrah~~S----i~rV~WA------hPEfG   73 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQ---TVKIWDSTSDSG---TWSCTSSWRAHDGS----IWRVVWA------HPEFG   73 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCC---cEEEEeccCCCC---ceEEeeeEEecCCc----EEEEEec------Ccccc
Confidence            45888899999999999999999997   678888755444   322     223222    2678886      454 9


Q ss_pred             CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEEEEecC
Q 010769          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASAD  288 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~D  288 (502)
                      +.+|+++.|+++.||.-...+.                  ..+.+.......+......|+.+.|.|.. +-.||+++.|
T Consensus        74 qvvA~cS~Drtv~iWEE~~~~~------------------~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aD  135 (361)
T KOG2445|consen   74 QVVATCSYDRTVSIWEEQEKSE------------------EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASAD  135 (361)
T ss_pred             ceEEEEecCCceeeeeeccccc------------------ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccC
Confidence            9999999999999998531100                  01122344445566778899999999963 4589999999


Q ss_pred             CcEEEEECCCC------eeeEEec-------cCCCCeEEEEEcCCC--CcEEEEEECC-----CcEEEEeCCCCC----C
Q 010769          289 KQVKIWDVAAG------KCNLTLE-------HHTDKVQAVAWNHHS--PQILLSGSFD-----RSVVMKDARIST----H  344 (502)
Q Consensus       289 g~v~vwd~~~~------~~~~~~~-------~h~~~v~~l~~~~~~--~~~l~s~~~d-----g~i~vwd~~~~~----~  344 (502)
                      |+||||+.-..      ...+.++       .+..+..|+.|+|..  ..+|+.|+.+     +.+.||......    .
T Consensus       136 G~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k  215 (361)
T KOG2445|consen  136 GILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK  215 (361)
T ss_pred             cEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee
Confidence            99999986532      3333333       466788999999753  2567777765     478888765443    2


Q ss_pred             ccceEeecCCeEEEEeCCCCC---CEEEEEeCCCeEEEEECCCCCC--------C---CCCCCCCccEEEecCCCCeeEE
Q 010769          345 SGFKWAVAADVESLAWDPHAE---HSFVVSLEDGTIKGFDIRTAKS--------D---PDSTSQQSSFTLHAHDKAVCTI  410 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~p~~~---~~l~~~~~dg~i~i~d~~~~~~--------~---~~~~~~~~~~~~~~h~~~v~~l  410 (502)
                      ...+..+..+|+.++|.|.-+   +++++++.|| |+||.++....        .   ........+..+..|.+.|..+
T Consensus       216 va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv  294 (361)
T KOG2445|consen  216 VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRV  294 (361)
T ss_pred             ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEE
Confidence            233447889999999999633   4788999999 99999985321        0   0011123345567899999999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          411 SYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      .|+-.| ..|++.|.||.||+|...-.
T Consensus       295 ~wNmtG-tiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  295 RWNMTG-TILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             EEeeee-eEEeecCCCceeeehhhhhh
Confidence            999988 99999999999999976543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.1e-20  Score=182.41  Aligned_cols=284  Identities=19%  Similarity=0.263  Sum_probs=223.4

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d  218 (502)
                      ..+|.+|+|+...+.||++..++   .+++|.....--.++.++++.+..+    -.++|       + .+..|.+.+.+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g---~IEiwN~~~~w~~~~vi~g~~drsI----E~L~W-------~-e~~RLFS~g~s   89 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDG---NIEIWNLSNNWFLEPVIHGPEDRSI----ESLAW-------A-EGGRLFSSGLS   89 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCC---cEEEEccCCCceeeEEEecCCCCce----eeEEE-------c-cCCeEEeecCC
Confidence            35799999999999999999998   7799988765544445555444444    46677       3 46677888889


Q ss_pred             CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~  298 (502)
                      |.|.-||+.+...                           ........++|++++.+|. ...++.|+.||.+..++...
T Consensus        90 g~i~EwDl~~lk~---------------------------~~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p  141 (691)
T KOG2048|consen   90 GSITEWDLHTLKQ---------------------------KYNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGP  141 (691)
T ss_pred             ceEEEEecccCce---------------------------eEEecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCC
Confidence            9999999976332                           2334456789999999999 57999999999888888877


Q ss_pred             CeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE----e----ecCCeEEEEeCCCCCCEE
Q 010769          299 GKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----A----VAADVESLAWDPHAEHSF  368 (502)
Q Consensus       299 ~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~----~~~~v~~v~~~p~~~~~l  368 (502)
                      ++...  .|...++.|.+++|+|++ ..+++|+.||.|++||..++.......    +    ...-|.+|.|-.++  .+
T Consensus       142 ~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI  218 (691)
T KOG2048|consen  142 DKITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TI  218 (691)
T ss_pred             ceEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cE
Confidence            76543  344456899999999999 789999999999999999877544111    1    12236777776543  79


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEEEec
Q 010769          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIASRN  446 (502)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~~~~  446 (502)
                      ++|...|+|.+||...+         ..+..+..|...|.+++..+++ .++++++.|+.|..|...++..  .....+.
T Consensus       219 ~sgDS~G~V~FWd~~~g---------TLiqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~  288 (691)
T KOG2048|consen  219 ASGDSAGTVTFWDSIFG---------TLIQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRD  288 (691)
T ss_pred             EEecCCceEEEEcccCc---------chhhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeecccc
Confidence            99999999999999987         7788889999999999999987 8999999999999998877642  2344556


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      .|...|.+++..++   .+++||.|..+.+=-.+.
T Consensus       289 ~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  289 LHAHDVRSMAVIEN---ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             CCcccceeeeeecc---eEEecceeeEEEEccccc
Confidence            78888999999887   588999999888866554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=3.7e-20  Score=172.87  Aligned_cols=296  Identities=14%  Similarity=0.229  Sum_probs=214.9

Q ss_pred             CccccccccccCC--CceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCC-CCEEEE
Q 010769          138 DSEDLEDMTINPN--DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAV  214 (502)
Q Consensus       138 ~~~~v~~~~~~p~--~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~-~~~la~  214 (502)
                      -+..|.+++|++.  |.+| ++-.++....|.||.|..+.... ......+.+     +..+|       +|. .+++++
T Consensus       153 f~~GV~~vaFsk~~~G~~l-~~vD~s~~h~lSVWdWqk~~~~~-~vk~sne~v-----~~a~F-------HPtd~nliit  218 (626)
T KOG2106|consen  153 FDRGVTCVAFSKINGGSLL-CAVDDSNPHMLSVWDWQKKAKLG-PVKTSNEVV-----FLATF-------HPTDPNLIIT  218 (626)
T ss_pred             ccccceeeeecccCCCceE-EEecCCCccccchhhchhhhccC-cceeccceE-----EEEEe-------ccCCCcEEEE
Confidence            3567999999986  3444 44444455688999998665311 111122222     33444       554 566666


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      .+ .|.+.+|++..........++.+                       ....-|+|++|.+++.  +++|..+|.|.||
T Consensus       219 ~G-k~H~~Fw~~~~~~l~k~~~~fek-----------------------~ekk~Vl~v~F~engd--viTgDS~G~i~Iw  272 (626)
T KOG2106|consen  219 CG-KGHLYFWTLRGGSLVKRQGIFEK-----------------------REKKFVLCVTFLENGD--VITGDSGGNILIW  272 (626)
T ss_pred             eC-CceEEEEEccCCceEEEeecccc-----------------------ccceEEEEEEEcCCCC--EEeecCCceEEEE
Confidence            65 58999999876544333222221                       1225699999999954  7899999999999


Q ss_pred             ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC------------------------------
Q 010769          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------------------------------  344 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------------------------------  344 (502)
                      +..+.+..+....|.+.|.+++...+|  .|++|+.|+.|..||-.-.+.                              
T Consensus       273 ~~~~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~  350 (626)
T KOG2106|consen  273 SKGTNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF  350 (626)
T ss_pred             eCCCceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence            998888877777999999999999998  577799999999998321100                              


Q ss_pred             ----------ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769          345 ----------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       345 ----------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                                ......|......++.+|+.+ ++++++.|+.+++|+  .         .++.++.. ...++.|+.|+|
T Consensus       351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~---------~k~~wt~~-~~d~~~~~~fhp  417 (626)
T KOG2106|consen  351 ILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--D---------HKLEWTKI-IEDPAECADFHP  417 (626)
T ss_pred             EEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--C---------CceeEEEE-ecCceeEeeccC
Confidence                      001123445667788888754 899999999999999  2         26666655 457789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010769          415 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       415 ~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      .|  .+|.|+..|...+.|..+...  +..... ..++++++|+|+|.+ ||.|+.|+.|+||-+..+.....+.+...+
T Consensus       418 sg--~va~Gt~~G~w~V~d~e~~~l--v~~~~d-~~~ls~v~ysp~G~~-lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g  491 (626)
T KOG2106|consen  418 SG--VVAVGTATGRWFVLDTETQDL--VTIHTD-NEQLSVVRYSPDGAF-LAVGSHDNHIYIYRVSANGRKYSRVGKCSG  491 (626)
T ss_pred             cc--eEEEeeccceEEEEeccccee--EEEEec-CCceEEEEEcCCCCE-EEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence            76  899999999999999998663  333333 789999999999995 999999999999999887776666655444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=3.9e-21  Score=182.77  Aligned_cols=312  Identities=16%  Similarity=0.217  Sum_probs=224.1

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      -.|.+.|.++...|.|..|++|+.+|   +++||.+.++..    ++   ...+.+...|++|.+.     ++-..||++
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDG---tvriWEi~TgRc----vr---~~~~d~~I~~vaw~P~-----~~~~vLAvA  461 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDG---TVRIWEIATGRC----VR---TVQFDSEIRSVAWNPL-----SDLCVLAVA  461 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCC---cEEEEEeecceE----EE---EEeecceeEEEEecCC-----CCceeEEEE
Confidence            46889999999999999999999887   678887776552    22   2234455689999532     334456666


Q ss_pred             cCCCcEEEeeCCCCCCCCc---eeeeCCcch------hhhhhccccCC-ccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQP---HVILGGIDE------EKKKKKSKKGK-KSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~---~~~l~~~~~------~~~~~~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .... +.|-+...++.+..   .-.|.....      +...|...... ...-......|...|..|.|+..| .+|++.
T Consensus       462 ~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV  539 (733)
T KOG0650|consen  462 VGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATV  539 (733)
T ss_pred             ecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEe
Confidence            5444 66666544422211   111111100      00111111000 111123445689999999999994 588887


Q ss_pred             ecC---CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769          286 SAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       286 s~D---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p  362 (502)
                      ..+   ..|.|+++...+...-|+...+.|+++.|+|.. .+|++++ -..|++||+..+............|.+++.+|
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp  617 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHP  617 (733)
T ss_pred             ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence            654   579999998887777777678899999999998 4555554 46799999988766655556667799999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC-------C
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL-------S  435 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~-------~  435 (502)
                      .|. .+++|+.++.+..||+.-.        .++..++..|...+++++|++.- .++++|+.||++.||--       .
T Consensus       618 ~GD-nli~gs~d~k~~WfDldls--------skPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~q  687 (733)
T KOG0650|consen  618 NGD-NLILGSYDKKMCWFDLDLS--------SKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQ  687 (733)
T ss_pred             CCC-eEEEecCCCeeEEEEcccC--------cchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhc
Confidence            887 5888999999999999877        57889999999999999999987 79999999999999842       2


Q ss_pred             CCCeeEEEEecCCCCC----EEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769          436 NNQPSCIASRNPKAGA----VFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       436 ~~~~~~~~~~~~~~~~----v~~~~~spd~~~llasg~~dg~i~vw  477 (502)
                      +.-...+..+.+|...    |..+.|+|..++ |.++|.||+|++|
T Consensus       688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf  732 (733)
T KOG0650|consen  688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF  732 (733)
T ss_pred             CCceEeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence            2223456667777554    889999999997 7778899999998

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.88  E-value=1.8e-20  Score=186.15  Aligned_cols=252  Identities=18%  Similarity=0.287  Sum_probs=194.3

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..|+.+.++      +.++||.|+.+|.|.+||+.......+                     .........|..+|+.+
T Consensus       245 v~~~~f~p~------~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------------s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  245 VTCLKFCPF------DPNLLAGGCYNGQVVLWDLRKGSDTPP---------------------SGLSALEVSHSEPVTAV  297 (555)
T ss_pred             eeEEEeccC------CcceEEeeccCceEEEEEccCCCCCCC---------------------cccccccccCCcCeEEE
Confidence            356666422      689999999999999999975433211                     22333445799999999


Q ss_pred             EecCCCC-cEEEEEecCCcEEEEECCCCee-e-----EEec------cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeC
Q 010769          273 AWNKEFR-NILASASADKQVKIWDVAAGKC-N-----LTLE------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       273 ~~~~~~~-~~l~sgs~Dg~v~vwd~~~~~~-~-----~~~~------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  339 (502)
                      .|..+-. .-++++|.||.|+.|+++.-.. +     ....      .-...+++++|.+..++.|+.|+..|.|..-..
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r  377 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR  377 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence            9976521 3488999999999998764321 1     1111      123478999999999999999999999887443


Q ss_pred             CCCCC--------ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEE
Q 010769          340 RISTH--------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS  411 (502)
Q Consensus       340 ~~~~~--------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  411 (502)
                      ...+.        ......|.+.|.++.++|....+|++++ |.+|++|.....        ..++..+..+...|++++
T Consensus       378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~--------~~Pl~~~~~~~~~v~~va  448 (555)
T KOG1587|consen  378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI--------ASPLLSLDSSPDYVTDVA  448 (555)
T ss_pred             cCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC--------CCcchhhhhccceeeeeE
Confidence            32221        1234467889999999999987777777 999999998843        377888888888899999


Q ss_pred             EcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       412 ~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      |||..+.+++++..+|.|.+||+.......+.+...+....+.+.|++.|+ +|++|...|++.+|++..
T Consensus       449 WSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  449 WSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence            999999999999999999999998876556666665667788899999999 699999999999999964

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=1.2e-20  Score=171.10  Aligned_cols=220  Identities=20%  Similarity=0.334  Sum_probs=177.9

Q ss_pred             ccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC-------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc
Q 010769          261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS  333 (502)
Q Consensus       261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  333 (502)
                      .+.||+.+|+.++|+|.+.+.|||||.|.+|.||.+..+       .++..+.+|...|--++|||.-.++|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            456999999999999998999999999999999998654       4567788999999999999999999999999999


Q ss_pred             EEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCC-eeEEEE
Q 010769          334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCTISY  412 (502)
Q Consensus       334 i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~  412 (502)
                      |.+|++.++..... ..|...|.+++|+.+|. ++++.+.|..|++||.|++         ..+..-.+|.+. -..+.|
T Consensus       156 v~iWnv~tgeali~-l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~---------~~v~e~~~heG~k~~Raif  224 (472)
T KOG0303|consen  156 VSIWNVGTGEALIT-LDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRG---------TVVSEGVAHEGAKPARAIF  224 (472)
T ss_pred             EEEEeccCCceeee-cCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCC---------cEeeecccccCCCcceeEE
Confidence            99999999887653 44999999999999876 8999999999999999997         666666777653 345557


Q ss_pred             cCCCCCEEEEEe---CCCcEEEEECCCC-CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          413 NPLVPNLLATGS---TDKMVKLWDLSNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       413 sp~~~~~l~t~s---~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      -.++ .++.||-   .+.++-+||..+. ++.....+....| |.---|.++...+.++|-.|+.||-|.+.........
T Consensus       225 l~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hy  302 (472)
T KOG0303|consen  225 LASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG-VLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHY  302 (472)
T ss_pred             eccC-ceeeeccccccccceeccCcccccCcceeEEeccCCc-eEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEE
Confidence            7666 5444443   3678999998764 3445556665544 5556688998877788888999999999888765555


Q ss_pred             ccCCC
Q 010769          489 FSKYS  493 (502)
Q Consensus       489 ~~~~~  493 (502)
                      +..+.
T Consensus       303 ln~f~  307 (472)
T KOG0303|consen  303 LNTFS  307 (472)
T ss_pred             ecccc
Confidence            54444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=1.4e-20  Score=166.61  Aligned_cols=291  Identities=19%  Similarity=0.288  Sum_probs=208.0

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCC-----CCCCceeeeec--cccCCCcceeeeecCCCCCCCCCCE
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESD-----GGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~-----~~~~~l~~~~~--~~~~~~~~~~~w~~~~~~~s~~~~~  211 (502)
                      .+-...+.|+|+|.-|++-+.+.   .|.+|.+-...     ........|..  .+-+...+...|.+.--..-|+.++
T Consensus        49 ~nf~kgckWSPDGSciL~~sedn---~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   49 LNFLKGCKWSPDGSCILSLSEDN---CLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             hhhhccceeCCCCceEEeecccC---eeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence            34556789999999999998876   56777553211     11111111111  1112223445565432233588999


Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccc---ceeeEEecCCCCcEEEEEecC
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD---SVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      +|+.+.+.-|.+||.-++.....                         +....|.+   +..+|+|+|+|. .|++| ..
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraS-------------------------y~~ydh~de~taAhsL~Fs~DGe-qlfaG-yk  178 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRAS-------------------------YRAYDHQDEYTAAHSLQFSPDGE-QLFAG-YK  178 (406)
T ss_pred             eeeccccCceeeeeccccccccc-------------------------hhhhhhHHhhhhheeEEecCCCC-eEeec-cc
Confidence            99999999999999876543221                         11223433   456899999965 66555 55


Q ss_pred             CcEEEEEC-CCCee--eEE-e----ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEe
Q 010769          289 KQVKIWDV-AAGKC--NLT-L----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW  360 (502)
Q Consensus       289 g~v~vwd~-~~~~~--~~~-~----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~  360 (502)
                      .+|+++|+ +.|+.  +.+ +    .+..+-+.+++|+|.....++.|++...+-||.-..........+|.+.|+.++|
T Consensus       179 rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~  258 (406)
T KOG2919|consen  179 RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQW  258 (406)
T ss_pred             ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEe
Confidence            79999999 44432  111 1    1236788999999999789999999999999988888888878899999999999


Q ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC-CeeE--EEEcCCCCCEEEEEeCCCcEEEEECCC-
Q 010769          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCT--ISYNPLVPNLLATGSTDKMVKLWDLSN-  436 (502)
Q Consensus       361 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~-~v~~--l~~sp~~~~~l~t~s~dg~i~vwd~~~-  436 (502)
                      .++|..++.-+..+-.|.+||+|..        ..+++.+..|.. .-..  +...|.+ .+|++|+.||.|++||+.. 
T Consensus       259 ~edGn~lfsGaRk~dkIl~WDiR~~--------~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  259 CEDGNKLFSGARKDDKILCWDIRYS--------RDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDL  329 (406)
T ss_pred             ccCcCeecccccCCCeEEEEeehhc--------cchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCC
Confidence            9999865555567889999999987        578888888765 3333  4446777 9999999999999999988 


Q ss_pred             CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC
Q 010769          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d  471 (502)
                      +.  .+..+..+...++.++++|--+ ++|+++..
T Consensus       330 gn--~~sv~~~~sd~vNgvslnP~mp-ilatssGq  361 (406)
T KOG2919|consen  330 GN--EVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ  361 (406)
T ss_pred             CC--cccccccccccccceecCcccc-eeeeccCc
Confidence            44  3556677888999999999977 68776643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=4.9e-20  Score=160.77  Aligned_cols=207  Identities=20%  Similarity=0.351  Sum_probs=167.1

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCee-eEEe-----ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK  337 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~-~~~~-----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  337 (502)
                      .+-+.|.|+.|.|+ +..||+-. |..|.+|++..+.. +..+     ..|....++-+|+|...-..+....++++..|
T Consensus       121 eavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~  198 (370)
T KOG1007|consen  121 EAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFW  198 (370)
T ss_pred             HHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEE
Confidence            45568999999998 55676655 78999999987754 3333     23566788899999332334445568999999


Q ss_pred             eCCCCCCcc-ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          338 DARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       338 d~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      |+|+..... ....|...|..+.|+|+...++++++.||.|++||.|+.        ..+++.+.+|...|.++.|+|.-
T Consensus       199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEEEEEEecCcc
Confidence            999866543 234677889999999998889999999999999999988        58999999999999999999987


Q ss_pred             CCEEEEEeCCCcEEEEECCCCC------------------------e---eEEEEecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769          417 PNLLATGSTDKMVKLWDLSNNQ------------------------P---SCIASRNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~------------------------~---~~~~~~~~~~~~v~~~~~spd~~~llasg~  469 (502)
                      ..+|++|+.|..|.+|....-.                        |   -.+.++..|...|++++|+.-.++++|+-+
T Consensus       271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS  350 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS  350 (370)
T ss_pred             ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence            7999999999999999764311                        1   124466778899999999999999999999


Q ss_pred             CCCcEEEEECC
Q 010769          470 SKGKLEIWDTL  480 (502)
Q Consensus       470 ~dg~i~vwd~~  480 (502)
                      .||++.|=.+.
T Consensus       351 YDGRviIs~V~  361 (370)
T KOG1007|consen  351 YDGRVIISSVP  361 (370)
T ss_pred             cCceEEeecCC
Confidence            99999886664

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=2.7e-21  Score=197.13  Aligned_cols=250  Identities=20%  Similarity=0.324  Sum_probs=194.8

Q ss_pred             cccccccccCCCce----EEEEEecCCcceeEEEEEecC--CCCCC---ceeeeeccccCCCcceeeeecCCCCCCC-CC
Q 010769          140 EDLEDMTINPNDAV----IVCARNEDDVSHLEVYILEES--DGGDP---NLYVHHHIIIPAFPLCMAWLDCPLKDRE-KG  209 (502)
Q Consensus       140 ~~v~~~~~~p~~~~----l~~~~~~~~~~~l~v~~~~~~--~~~~~---~l~~~~~~~~~~~~~~~~w~~~~~~~s~-~~  209 (502)
                      ..-..+.|.+.+..    ||.|..+|   .|.+|.-..-  .....   ....|+..+     +.+++       ++ .+
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG---~I~ly~p~~~~~~~~~~~la~~~~h~G~V-----~gLDf-------N~~q~  129 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDG---NIVLYDPASIIANASEEVLATKSKHTGPV-----LGLDF-------NPFQG  129 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCC---ceEEecchhhccCcchHHHhhhcccCCce-----eeeec-------cccCC
Confidence            45577888888776    55555555   5666665542  11111   112333222     45555       44 47


Q ss_pred             CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC
Q 010769          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  289 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg  289 (502)
                      ++||+|+.+|.|.|||+...+.....                         ....-.+.|.+|+|+....++|++++.+|
T Consensus       130 nlLASGa~~geI~iWDlnn~~tP~~~-------------------------~~~~~~~eI~~lsWNrkvqhILAS~s~sg  184 (1049)
T KOG0307|consen  130 NLLASGADDGEILIWDLNKPETPFTP-------------------------GSQAPPSEIKCLSWNRKVSHILASGSPSG  184 (1049)
T ss_pred             ceeeccCCCCcEEEeccCCcCCCCCC-------------------------CCCCCcccceEeccchhhhHHhhccCCCC
Confidence            79999999999999999753322110                         01235678999999999899999999999


Q ss_pred             cEEEEECCCCeeeEEeccCCC--CeEEEEEcCCCCcEEEEEECCC---cEEEEeCCCCCCccc-eEeecCCeEEEEeCCC
Q 010769          290 QVKIWDVAAGKCNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDR---SVVMKDARISTHSGF-KWAVAADVESLAWDPH  363 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~  363 (502)
                      .+.|||++..+.+..+..|.+  .+..|.|||+....+++++.|.   .|.+||+|....... ...|...|.++.|++.
T Consensus       185 ~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~  264 (1049)
T KOG0307|consen  185 RAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ  264 (1049)
T ss_pred             CceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCC
Confidence            999999999988888866554  5789999999988888888764   689999997665443 4589999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      +..++++++.|+.|.+|+..++         ..+..+......+..+.|+|..+.++++++.||.|.||.+....
T Consensus       265 D~~lllSsgkD~~ii~wN~~tg---------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  265 DPRLLLSSGKDNRIICWNPNTG---------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CchhhhcccCCCCeeEecCCCc---------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9889999999999999999997         78888888889999999999998999999999999999997754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=1.6e-19  Score=172.72  Aligned_cols=238  Identities=13%  Similarity=0.124  Sum_probs=166.4

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      ++++++++.++.|++||+.+...+.                           .+..| ..+.+++|+|++..++++++.+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~---------------------------~~~~~-~~~~~l~~~~dg~~l~~~~~~~   52 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTR---------------------------TFPVG-QRPRGITLSKDGKLLYVCASDS   52 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEE---------------------------EEECC-CCCCceEECCCCCEEEEEECCC
Confidence            3578899999999999987533211                           12223 3467899999965455778889


Q ss_pred             CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEE
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  368 (502)
                      +.|++||+.+++.+..+..+.. +..++|+|++..++++++.++.|++||+++.+... .......+.+++|+|++. ++
T Consensus        53 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~dg~-~l  129 (300)
T TIGR03866        53 DTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA-EIPVGVEPEGMAVSPDGK-IV  129 (300)
T ss_pred             CeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe-EeeCCCCcceEEECCCCC-EE
Confidence            9999999999988877765443 56789999994444556678999999998765433 233344578899999876 66


Q ss_pred             EEEeCCC-eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCCeeEEEEec
Q 010769          369 VVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL-ATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       369 ~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l-~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      +++..++ .+.+||.++.         ....... ....+.+++|+|++ .+| +++..++.|++||+.+++........
T Consensus       130 ~~~~~~~~~~~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~  198 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKTY---------EIVDNVL-VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVIKKITFE  198 (300)
T ss_pred             EEEecCCCeEEEEeCCCC---------eEEEEEE-cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence            6666554 5777898765         3333322 23345789999998 555 55567999999999987632222221


Q ss_pred             C---C--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          447 P---K--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       447 ~---~--~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .   +  ......++|+|++++++++.+.++.|.+||+.+++.+...
T Consensus       199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~  245 (300)
T TIGR03866       199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL  245 (300)
T ss_pred             ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            1   1  1123568899999976666666778999999988766543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=8.6e-20  Score=176.27  Aligned_cols=252  Identities=20%  Similarity=0.278  Sum_probs=194.5

Q ss_pred             CCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccce
Q 010769          190 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  269 (502)
Q Consensus       190 ~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  269 (502)
                      |+-..|+++       +.+.+.||++-.+|.|.||++...=...+.                         ...+..+.|
T Consensus        25 Ps~I~slA~-------s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v-------------------------i~g~~drsI   72 (691)
T KOG2048|consen   25 PSEIVSLAY-------SHKSNQLAVSRTDGNIEIWNLSNNWFLEPV-------------------------IHGPEDRSI   72 (691)
T ss_pred             ccceEEEEE-------eccCCceeeeccCCcEEEEccCCCceeeEE-------------------------EecCCCCce
Confidence            333456655       778888999999999999999752222111                         111345789


Q ss_pred             eeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc--c
Q 010769          270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--F  347 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~  347 (502)
                      -+|+|.+.  ..|+|.+.+|.|.-||+.++++...+....+.|++++.+|.+ ..++.|+.||.+..++........  .
T Consensus        73 E~L~W~e~--~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~  149 (691)
T KOG2048|consen   73 ESLAWAEG--GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRS  149 (691)
T ss_pred             eeEEEccC--CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEee
Confidence            99999965  368899999999999999999999999889999999999999 889999999977777776554332  1


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEEEeCC
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      +....+.+.++.|+|++. .+++|+.||.|++||...+......  ...+..+.. ...-|+++.|-.+  ..|++|..-
T Consensus       150 l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~~t~~~~--~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~  224 (691)
T KOG2048|consen  150 LMRQKSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKSGQTLHII--TMQLDRLSKREPTIVWSVLFLRD--STIASGDSA  224 (691)
T ss_pred             cccccceEEEEEecCCcc-EEEecccCceEEEEEcCCCceEEEe--eecccccccCCceEEEEEEEeec--CcEEEecCC
Confidence            234568899999999865 6999999999999999987320000  000011111 2234778888764  589999999


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      |+|++||...+.  ++..+..|.+.|.+++..+++.+ +.++|.|+.|..|...++..
T Consensus       225 G~V~FWd~~~gT--LiqS~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  225 GTVTFWDSIFGT--LIQSHSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             ceEEEEcccCcc--hhhhhhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEecCCcc
Confidence            999999999988  67788889999999999999884 88899999999998887754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=6.7e-20  Score=177.30  Aligned_cols=300  Identities=14%  Similarity=0.208  Sum_probs=223.0

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeee--ccccC---CCcceeeeecCCCCCCCCCC
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHH--HIIIP---AFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~--~~~~~---~~~~~~~w~~~~~~~s~~~~  210 (502)
                      ..|++.|.++.|+|.+..|++++.+.   ++-||.-+...+    +++..  -..+.   .-.+..-|       +|+++
T Consensus       264 ~GHeDWV~sv~W~p~~~~LLSASaDk---smiiW~pd~~tG----iWv~~vRlGe~gg~a~GF~g~lw-------~~n~~  329 (764)
T KOG1063|consen  264 MGHEDWVYSVWWHPEGLDLLSASADK---SMIIWKPDENTG----IWVDVVRLGEVGGSAGGFWGGLW-------SPNSN  329 (764)
T ss_pred             cCcccceEEEEEccchhhheecccCc---ceEEEecCCccc----eEEEEEEeecccccccceeeEEE-------cCCCC
Confidence            46999999999999999999999987   566666555432    22111  11111   00122334       78999


Q ss_pred             EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~  290 (502)
                      .+++-+..|-.++|....                        +..........||.+.|.++.|.|.| .+|+|.|.|.+
T Consensus       330 ~ii~~g~~Gg~hlWkt~d------------------------~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQT  384 (764)
T KOG1063|consen  330 VIIAHGRTGGFHLWKTKD------------------------KTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQT  384 (764)
T ss_pred             EEEEecccCcEEEEeccC------------------------ccceeeccccccccccceeeeecCCC-CEEEEeccccc
Confidence            999999999999998211                        11122333456899999999999995 59999999999


Q ss_pred             EEEEECCCC----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-------------------------
Q 010769          291 VKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-------------------------  341 (502)
Q Consensus       291 v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-------------------------  341 (502)
                      -||+-.-..    ..+..-+-|...++|+++-+.. ..|++|.....+|+|+...                         
T Consensus       385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~  463 (764)
T KOG1063|consen  385 TRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN  463 (764)
T ss_pred             eeeecccccccceeeecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence            999865411    1233346688899999998864 7899999999999987530                         


Q ss_pred             ------------------CCC---------------------------------ccceEeecCCeEEEEeCCCCCCEEEE
Q 010769          342 ------------------STH---------------------------------SGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       342 ------------------~~~---------------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~  370 (502)
                                        +..                                 ....++|...|.+++.+|++. ++++
T Consensus       464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liAS  542 (764)
T KOG1063|consen  464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIAS  542 (764)
T ss_pred             cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEee
Confidence                              000                                 001234556799999999865 7888


Q ss_pred             EeCCC-----eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEE
Q 010769          371 SLEDG-----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIA  443 (502)
Q Consensus       371 ~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~  443 (502)
                      ++...     .|++|+..+.         ..+..+..|+-.|+.++|||++ ++|++.|.|.++.+|.......  ....
T Consensus       543 aCKS~~~ehAvI~lw~t~~W---------~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa  612 (764)
T KOG1063|consen  543 ACKSSLKEHAVIRLWNTANW---------LQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFA  612 (764)
T ss_pred             hhhhCCccceEEEEEeccch---------hhhheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhc
Confidence            76543     5899999886         6667899999999999999998 9999999999999998855321  1122


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--ccccc
Q 010769          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD--AGISN  487 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~--~~~~~  487 (502)
                      ....|..-|+.+.|+|++.| ++|++.|.+|+||.....  +.+.+
T Consensus       613 ~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~~~~d~~i~~  657 (764)
T KOG1063|consen  613 CLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEPDLRDKYISR  657 (764)
T ss_pred             cccccceEEEEcccCcccce-eEEecCCceEEEEeccCchhhhhhh
Confidence            36778888999999999997 999999999999999887  54443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.3e-20  Score=168.13  Aligned_cols=195  Identities=15%  Similarity=0.244  Sum_probs=152.9

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC-CCcEEEEEec
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASASA  287 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~sgs~  287 (502)
                      .+.+|++...|.|++||..+++.++                           .+.+|...++.++|... +.+.+.+|+.
T Consensus        40 e~~vav~lSngsv~lyd~~tg~~l~---------------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ss   92 (376)
T KOG1188|consen   40 ETAVAVSLSNGSVRLYDKGTGQLLE---------------------------EFKGPPATTNGVRFISCDSPHGVISCSS   92 (376)
T ss_pred             ceeEEEEecCCeEEEEeccchhhhh---------------------------eecCCCCcccceEEecCCCCCeeEEecc
Confidence            4679999999999999998744433                           45578888889998764 5789999999


Q ss_pred             CCcEEEEECCCCeeeEEe--ccCC-CCeEEEEEcCCCCcEEEEEEC----CCcEEEEeCCCCCCc-c-ceEeecCCeEEE
Q 010769          288 DKQVKIWDVAAGKCNLTL--EHHT-DKVQAVAWNHHSPQILLSGSF----DRSVVMKDARISTHS-G-FKWAVAADVESL  358 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~--~~h~-~~v~~l~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~-~-~~~~~~~~v~~v  358 (502)
                      ||+|++||++.......+  ..+. .+..|++.+-.+ +++++|..    +-.|.+||+|..+.. . ....|...|+++
T Consensus        93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~l  171 (376)
T KOG1188|consen   93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQL  171 (376)
T ss_pred             CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeE
Confidence            999999999987544433  4455 567778777666 77777753    678999999987762 2 234788999999


Q ss_pred             EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       359 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      +|+|..++++++|+.||.|.+||+.....      ...+.....|...|.++.|...+-..|.+-+...+..+|++..+
T Consensus       172 rFHP~~pnlLlSGSvDGLvnlfD~~~d~E------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  172 RFHPSDPNLLLSGSVDGLVNLFDTKKDNE------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             EecCCCCCeEEeecccceEEeeecCCCcc------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence            99999999999999999999999987632      23445555677889999999866457888888888999988654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=3.2e-20  Score=162.09  Aligned_cols=254  Identities=20%  Similarity=0.297  Sum_probs=193.0

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCC----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccc
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  268 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  268 (502)
                      .+.+.|...    ...+.+||+|+.-    +.|.|-.++.... .                      ... .....|.-+
T Consensus        47 lya~~Ws~~----~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-e----------------------~~~-~a~fd~~YP   98 (364)
T KOG0290|consen   47 LYAMNWSVR----PDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-E----------------------LVE-DANFDHPYP   98 (364)
T ss_pred             eeeeccccC----CCcceeEEEeeeccccCCeeEEEEEccCCC-c----------------------eec-cCCCCCCCC
Confidence            356777432    2346789999853    6677766652110 0                      000 011368999


Q ss_pred             eeeEEecCCC----CcEEEEEecCCcEEEEECCC--Cee--eEEe-----ccCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 010769          269 VLGLAWNKEF----RNILASASADKQVKIWDVAA--GKC--NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVV  335 (502)
Q Consensus       269 V~~l~~~~~~----~~~l~sgs~Dg~v~vwd~~~--~~~--~~~~-----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  335 (502)
                      ++.+.|.|+.    ..+|||++  ..+|+|.+..  ++.  ...+     ..+..++++..|+.-.++++.+++-|-++.
T Consensus        99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCT  176 (364)
T KOG0290|consen   99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCT  176 (364)
T ss_pred             ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEE
Confidence            9999999983    23666654  4799999873  221  1111     346689999999999999999999999999


Q ss_pred             EEeCCCCCC---ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEE
Q 010769          336 MKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  412 (502)
Q Consensus       336 vwd~~~~~~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  412 (502)
                      |||+.++..   ...+..|...|..++|...+...|++.+.||.|++||+|....      ...++.-.....+...++|
T Consensus       177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH------STIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH------STIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             EEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc------ceEEecCCCCCCcceeecc
Confidence            999998633   4556789999999999998888999999999999999998732      2233333333678999999


Q ss_pred             cCCCCCEEEEEeCCC-cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          413 NPLVPNLLATGSTDK-MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       413 sp~~~~~l~t~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +++.++++||-..|+ .|.|.|++... ..+..+.+|.+.|+.++|.|..+..|+++|.|..+.+||+.+-.
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCC-cceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence            999999999977764 59999999865 36788999999999999999988789999999999999997643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.86  E-value=4.4e-20  Score=176.55  Aligned_cols=129  Identities=23%  Similarity=0.452  Sum_probs=112.2

Q ss_pred             cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      ...|+.+.|+|.....+++++.||.|++|.+.........  ..+-..+.+|...|+++.|+|-...+|++++.|.+|++
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~--~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~l  704 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE--MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIEL  704 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc--CCcceeeecccceEEEEEecchhhhHhhhhhccceeee
Confidence            3457889999998889999999999999999876443322  35667788999999999999987789999999999999


Q ss_pred             EECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      ||+.+.+  ....+.+|.+.|+.++|||+|+ ++|+.+.||+|+||+.++++..
T Consensus       705 WDl~~~~--~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  705 WDLANAK--LYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQP  755 (1012)
T ss_pred             eehhhhh--hhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCc
Confidence            9999988  4567889999999999999999 6999999999999999887653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.2e-19  Score=160.08  Aligned_cols=291  Identities=12%  Similarity=0.216  Sum_probs=203.9

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010769          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      .++++|++-|.+||+|+.+|   .+-||.+.+-  +...+..-|..++    .|++|       |++|++|++++.|..|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG---~vvI~D~~T~--~iar~lsaH~~pi----~sl~W-------S~dgr~LltsS~D~si   89 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANG---RVVIYDFDTF--RIARMLSAHVRPI----TSLCW-------SRDGRKLLTSSRDWSI   89 (405)
T ss_pred             cceEEeccCcceeeeeccCC---cEEEEEcccc--chhhhhhccccce----eEEEe-------cCCCCEeeeecCCcee
Confidence            78999999999999999998   4556655543  3335555555554    68888       8999999999999999


Q ss_pred             EEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCee
Q 010769          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC  301 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~  301 (502)
                      .+||+..+..+..+                            ....+|+.+.|+|...+.++++-.+..-.+-++..++.
T Consensus        90 ~lwDl~~gs~l~ri----------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h  141 (405)
T KOG1273|consen   90 KLWDLLKGSPLKRI----------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH  141 (405)
T ss_pred             EEEeccCCCceeEE----------------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce
Confidence            99999876544332                            24688999999998777777776666666666654321


Q ss_pred             eEEecc----CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec-CCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          302 NLTLEH----HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       302 ~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      ...-..    .+....+..|.+.| .++++|...|.+.+++..+.++........ ..|..+.++..+. +|++-+.|..
T Consensus       142 ~~Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRv  219 (405)
T KOG1273|consen  142 SVLPKDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRV  219 (405)
T ss_pred             eeccCCCccccccccccccccCCC-CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCce
Confidence            111010    11122334578888 999999999999999999988766444433 6788899988766 8999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEe--cCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCeeEEEEecCCC-CCE
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQPSCIASRNPKA-GAV  452 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~~~~~~~~~~~~~~~-~~v  452 (502)
                      |+.|+++............+.+.++  ....+-.+++|+.+| .++++++ .-..++||.-..+.  ++..+.+.. ...
T Consensus       220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~Gs--LVKILhG~kgE~l  296 (405)
T KOG1273|consen  220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGS--LVKILHGTKGEEL  296 (405)
T ss_pred             EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCcc--eeeeecCCchhhe
Confidence            9999988432110000011112221  112344678899988 5555554 45679999999988  455566555 457


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       453 ~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ..+.|+|-.+ ++++- ..|.++||....-.
T Consensus       297 ~DV~whp~rp-~i~si-~sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  297 LDVNWHPVRP-IIASI-ASGVVYIWAVVQVE  325 (405)
T ss_pred             eeccccccee-eeeec-cCCceEEEEeeccc
Confidence            7899999988 36554 78899999986543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.86  E-value=1e-20  Score=176.26  Aligned_cols=250  Identities=16%  Similarity=0.224  Sum_probs=200.1

Q ss_pred             CCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCC
Q 010769          128 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       128 d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~  207 (502)
                      .|...++...-++-|.++.++|+|+.|++|+.   .++|.||.+.....   .+...-   ..+-|.|     ++++.+|
T Consensus       454 ~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe---astlsiWDLAapTp---rikael---tssapaC-----yALa~sp  519 (705)
T KOG0639|consen  454 SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE---ASTLSIWDLAAPTP---RIKAEL---TSSAPAC-----YALAISP  519 (705)
T ss_pred             CccccccccCcccceeeeEecCCCceEEeccc---cceeeeeeccCCCc---chhhhc---CCcchhh-----hhhhcCC
Confidence            34444555556788999999999999999985   46889999876654   222111   1112222     2345599


Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      |.++++++..||.|.|||+..                           ..++..+.||++.+.||..+++ +..|-+|+-
T Consensus       520 DakvcFsccsdGnI~vwDLhn---------------------------q~~VrqfqGhtDGascIdis~d-GtklWTGGl  571 (705)
T KOG0639|consen  520 DAKVCFSCCSDGNIAVWDLHN---------------------------QTLVRQFQGHTDGASCIDISKD-GTKLWTGGL  571 (705)
T ss_pred             ccceeeeeccCCcEEEEEccc---------------------------ceeeecccCCCCCceeEEecCC-CceeecCCC
Confidence            999999999999999999974                           4455678899999999999999 568999999


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  367 (502)
                      |.+||-||+++++.+.... .++.|.++.++|++ ..|+.|-.++.+-|...+...... ...|.+.|.++.|.+.|. .
T Consensus       572 DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~kyq-lhlheScVLSlKFa~cGk-w  647 (705)
T KOG0639|consen  572 DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEKYQ-LHLHESCVLSLKFAYCGK-W  647 (705)
T ss_pred             ccceeehhhhhhhhhhhhh-hhhhheecccCCCc-cceeeecccCcEEEEecCCcccee-ecccccEEEEEEecccCc-e
Confidence            9999999999998776654 56889999999999 899999999999998887655433 567888999999999876 8


Q ss_pred             EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      |++.+.|..+..|.+.-+         ..++... ..++|.++.++.+. ++++||+.|+...||.+
T Consensus       648 fvStGkDnlLnawrtPyG---------asiFqsk-E~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  648 FVSTGKDNLLNAWRTPYG---------ASIFQSK-ESSSVLSCDISFDD-KYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eeecCchhhhhhccCccc---------cceeecc-ccCcceeeeeccCc-eEEEecCCCcceEEEEE
Confidence            999999999999988766         4444444 46789999999987 99999999998888864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4.9e-20  Score=170.40  Aligned_cols=239  Identities=13%  Similarity=0.193  Sum_probs=188.3

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|...+|++++.||.++||.++..                         .......+.-...+|.+..|.|+|...++++
T Consensus       222 Hp~~plllvaG~d~~lrifqvDGk-------------------------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s  276 (514)
T KOG2055|consen  222 HPTAPLLLVAGLDGTLRIFQVDGK-------------------------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS  276 (514)
T ss_pred             cCCCceEEEecCCCcEEEEEecCc-------------------------cChhheeeeeccCccceeeecCCCceEEEec
Confidence            788999999999999999999741                         1222233334568999999999976699999


Q ss_pred             ecCCcEEEEECCCCeeeE--EeccCC-CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769          286 SADKQVKIWDVAAGKCNL--TLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~--~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p  362 (502)
                      +.-..+..||+.+.+...  ...++. ..+.....++++ ++|+..+..|.|.+.-..+...+. .+...+.|..++|+.
T Consensus       277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~-s~KieG~v~~~~fsS  354 (514)
T KOG2055|consen  277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELIT-SFKIEGVVSDFTFSS  354 (514)
T ss_pred             ccceEEEEeeccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhh-eeeeccEEeeEEEec
Confidence            999999999999886533  333433 356677889999 899999999999999988877665 677889999999998


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC----C
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN----N  437 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~----~  437 (502)
                      ++. .+++++.+|.|.+||++..         .++.++.... -.-++++.++++ .+||+||..|.|.|||..+    .
T Consensus       355 dsk-~l~~~~~~GeV~v~nl~~~---------~~~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~  423 (514)
T KOG2055|consen  355 DSK-ELLASGGTGEVYVWNLRQN---------SCLHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAST  423 (514)
T ss_pred             CCc-EEEEEcCCceEEEEecCCc---------ceEEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhccC
Confidence            875 7788888999999999986         5555554322 133667777888 8999999999999999654    3


Q ss_pred             CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCc
Q 010769          438 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDA  483 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~--dg~i~vwd~~~~~  483 (502)
                      .|.++..+..-...|++++|+|+.+ +||.++.  +..+++-.+.+..
T Consensus       424 ~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~T  470 (514)
T KOG2055|consen  424 NPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCT  470 (514)
T ss_pred             CCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEecccee
Confidence            4566777777788999999999998 6777665  4678888886644

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=1.5e-19  Score=160.05  Aligned_cols=249  Identities=17%  Similarity=0.334  Sum_probs=181.4

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec-------CCC
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-------KEF  278 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-------~~~  278 (502)
                      ||+|..|++-+.|..+++|++.....-...   ++          ...-+......+ .....|...+|-       |. 
T Consensus        58 SPDGSciL~~sedn~l~~~nlP~dlys~~~---~~----------~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~-  122 (406)
T KOG2919|consen   58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKA---DG----------PLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPS-  122 (406)
T ss_pred             CCCCceEEeecccCeeeEEecChhhcccCC---CC----------ccccccceeEEe-ccCCEEEEEEeeeccccCCCc-
Confidence            899999999999999999998632110000   00          000001111111 234667787875       45 


Q ss_pred             CcEEEEEecCCcEEEEECCCCeeeEEecc--CCC---CeEEEEEcCCCCcEEEEEECCCcEEEEeC-CCCCCcc------
Q 010769          279 RNILASASADKQVKIWDVAAGKCNLTLEH--HTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDA-RISTHSG------  346 (502)
Q Consensus       279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~--h~~---~v~~l~~~~~~~~~l~s~~~dg~i~vwd~-~~~~~~~------  346 (502)
                      .+++|+.+.+.-|++||.-+|+...++.+  |..   ...+|+|+|+| ..|++ +..+.|++||+ |.+....      
T Consensus       123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfa-GykrcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFA-GYKRCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEee-cccceEEEeeccCCCCCCcchhhhh
Confidence            57999999999999999999998877754  333   45689999999 66655 56789999999 4433211      


Q ss_pred             -ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769          347 -FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       347 -~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                       -..+..+-+.|++|+|.....+++|+-...+-||.-...         .+++.+.+|.+.|+.++|.++| +.|.+|+.
T Consensus       201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---------~pl~llggh~gGvThL~~~edG-n~lfsGaR  270 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---------RPLQLLGGHGGGVTHLQWCEDG-NKLFSGAR  270 (406)
T ss_pred             cccccccceeeeeeccCCCCcceeeecccceeeeEecCCC---------CceeeecccCCCeeeEEeccCc-Ceeccccc
Confidence             122346678999999998889999998888888876664         7889999999999999999999 66777665


Q ss_pred             -CCcEEEEECCCCCeeEEEEecCCCC-CEEEE--EEcCCCCcEEEEEeCCCcEEEEECCC-Cc
Q 010769          426 -DKMVKLWDLSNNQPSCIASRNPKAG-AVFSV--AFSEDSPFVLAIGGSKGKLEIWDTLS-DA  483 (502)
Q Consensus       426 -dg~i~vwd~~~~~~~~~~~~~~~~~-~v~~~--~~spd~~~llasg~~dg~i~vwd~~~-~~  483 (502)
                       +-.|-+||++..+- .+..+..|.+ .-..|  ...|+++ +|++|+.+|.|++||+.+ +.
T Consensus       271 k~dkIl~WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  271 KDDKILCWDIRYSRD-PVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             CCCeEEEEeehhccc-hhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCC
Confidence             77899999998653 4556666655 33334  4468898 599999999999999988 44

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=8.9e-20  Score=175.42  Aligned_cols=275  Identities=18%  Similarity=0.347  Sum_probs=205.8

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      .|.+++|.|+|..|+.+..+      ++++|+...+. ...|..|.+.+     .|++|       +.+|+.+|+|+.|.
T Consensus        14 ci~d~afkPDGsqL~lAAg~------rlliyD~ndG~llqtLKgHKDtV-----ycVAy-------s~dGkrFASG~aDK   75 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS------RLLVYDTSDGTLLQPLKGHKDTV-----YCVAY-------AKDGKRFASGSADK   75 (1081)
T ss_pred             chheeEECCCCceEEEecCC------EEEEEeCCCcccccccccccceE-----EEEEE-------ccCCceeccCCCce
Confidence            79999999999988777655      78888877663 23556777766     79999       78999999999999


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .|.||+-.....+                             -..|.+.|.|++|+|- .+.|+||+-. ..-+|.....
T Consensus        76 ~VI~W~~klEG~L-----------------------------kYSH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK  124 (1081)
T KOG1538|consen   76 SVIIWTSKLEGIL-----------------------------KYSHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQK  124 (1081)
T ss_pred             eEEEeccccccee-----------------------------eeccCCeeeEeecCch-HHHhhhcchh-hccccChhhh
Confidence            9999986421111                             1269999999999998 6789998874 5778886543


Q ss_pred             eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce--EeecCCeEEEEeCCCCC----CEEEEEeC
Q 010769          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAE----HSFVVSLE  373 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~v~~~p~~~----~~l~~~~~  373 (502)
                      . +...+ ....|.+++|..+| ++|+.|-.+|+|.+-+-.........  .+..++|.+++|+|...    ..+++...
T Consensus       125 ~-V~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW  201 (1081)
T KOG1538|consen  125 S-VSKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW  201 (1081)
T ss_pred             h-HHhhh-hheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec
Confidence            3 22222 35678999999999 99999999999999865443332211  13567899999999632    35667777


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      +.++.+|.+...          .+..-..-.-...|+++.++| .+++.|+.|+.+++|--..-   .+-+.......|+
T Consensus       202 ~qTLSFy~LsG~----------~Igk~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~Gv---rLGTvg~~D~WIW  267 (1081)
T KOG1538|consen  202 GQTLSFYQLSGK----------QIGKDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDGV---RLGTVGEQDSWIW  267 (1081)
T ss_pred             cceeEEEEecce----------eecccccCCCCchhheeccCC-cEEEEccCCCceEEEeecCe---EEeeccccceeEE
Confidence            777777777632          222223334456789999998 89999999999999964432   3455555667899


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          454 SVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       454 ~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      +++..|++++ ++.|+.||+|.-|++...
T Consensus       268 tV~~~PNsQ~-v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  268 TVQAKPNSQY-VVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             EEEEccCCce-EEEEEccCeeehhhhHHh
Confidence            9999999996 899999999999998543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=4.5e-20  Score=174.81  Aligned_cols=259  Identities=18%  Similarity=0.222  Sum_probs=190.6

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |++....|++++.+|.|.+|++...                   .....+.......+.+|.++|.|++..++ +..+++
T Consensus       302 ~~~sep~lit~sed~~lk~WnLqk~-------------------~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ys  361 (577)
T KOG0642|consen  302 FHPSEPVLITASEDGTLKLWNLQKA-------------------KKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYS  361 (577)
T ss_pred             cCCCCCeEEEeccccchhhhhhccc-------------------CCccccceeeeEEEecccCceEEEEecCC-ceEEEe
Confidence            3677889999999999999999420                   01233446677788999999999999999 669999


Q ss_pred             EecCCcEEEEECCCC----------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecC
Q 010769          285 ASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAA  353 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~  353 (502)
                      |+.||+|+.|++...          .....+.||++.|+.+++|+.. ..|++++.||++++|............ ...+
T Consensus       362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g  440 (577)
T KOG0642|consen  362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG  440 (577)
T ss_pred             eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCccccCCccccC
Confidence            999999999976421          2345678999999999999988 789999999999999988766522111 1223


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-----CCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-----HDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      ...++.+-.......++....+.-.++++.....       ..+....+     -...+..+.++|.+ .+.+++..|+.
T Consensus       441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-------~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~  512 (577)
T KOG0642|consen  441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-------LLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRS  512 (577)
T ss_pred             CcceEeeccchhHhhhhhcccccccchhhhhhhh-------eeeccccCCCcccccCccceEEecCCC-CeeEecccCCc
Confidence            3455555433222333333333333444433211       01111111     12346778889987 89999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                      |+++|..++.  .+.....|...++++++.|+|.| |++|+.||.+++|.+....++.....++..+
T Consensus       513 Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~k~~~~es~~~r~~~  576 (577)
T KOG0642|consen  513 IRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDVKTCVLESTAHRKKP  576 (577)
T ss_pred             eecccccccc--cchheeeccceecceeecCCCce-EEeecCCceeehhhccchheeeccccccccC
Confidence            9999999998  56777788899999999999996 8999999999999999988888877777654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=9.4e-19  Score=152.83  Aligned_cols=269  Identities=17%  Similarity=0.258  Sum_probs=193.3

Q ss_pred             CCccccccccccCCCceEEEEEecCCc-----ceeEEEEEecCCCCCC--ce--eeeeccccCCCcceeeeecCCCCCCC
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDV-----SHLEVYILEESDGGDP--NL--YVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~-----~~l~v~~~~~~~~~~~--~l--~~~~~~~~~~~~~~~~w~~~~~~~s~  207 (502)
                      .+.++|..++-+|.++.|++.......     ...-||.+.+..+...  .+  ..+-+...-+...|+.|       .|
T Consensus        61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew-------~P  133 (370)
T KOG1007|consen   61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW-------EP  133 (370)
T ss_pred             cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE-------cC
Confidence            467899999999999888777655321     1334555544333100  01  11222122223478999       57


Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC-CCcEEEEEe
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~sgs  286 (502)
                      ++..||+-. +..|.+|+++........ +                    ......+|....++-+|+|. .++.+++. 
T Consensus       134 ns~klasm~-dn~i~l~~l~ess~~vae-v--------------------~ss~s~e~~~~ftsg~WspHHdgnqv~tt-  190 (370)
T KOG1007|consen  134 NSDKLASMD-DNNIVLWSLDESSKIVAE-V--------------------LSSESAEMRHSFTSGAWSPHHDGNQVATT-  190 (370)
T ss_pred             CCCeeEEec-cCceEEEEcccCcchhee-e--------------------cccccccccceecccccCCCCccceEEEe-
Confidence            888888876 789999999754332110 0                    00111236777888999993 35566554 


Q ss_pred             cCCcEEEEECCCCeeeEEe-ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecCCeEEEEeCCCC
Q 010769          287 ADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHA  364 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~p~~  364 (502)
                      .|+++..||+++.++...+ ..|...|..+.|+|+-..+|++|+.||.|++||+|..+.+. .+..|...|.+|.|+|..
T Consensus       191 ~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  191 SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc
Confidence            5789999999998887777 57888999999999988899999999999999999877654 345788899999999988


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCC--------------------CCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDP--------------------DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~--------------------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ..++++|+.|..|.+|-...-....                    .+.....+.++..|...|.+++|+.-.|-++|+-|
T Consensus       271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS  350 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS  350 (370)
T ss_pred             ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence            8899999999999999876543100                    01112334567789999999999998899999999


Q ss_pred             CCCcEEEEECC
Q 010769          425 TDKMVKLWDLS  435 (502)
Q Consensus       425 ~dg~i~vwd~~  435 (502)
                      .||.+.|=.+.
T Consensus       351 YDGRviIs~V~  361 (370)
T KOG1007|consen  351 YDGRVIISSVP  361 (370)
T ss_pred             cCceEEeecCC
Confidence            99999886654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=6e-19  Score=156.02  Aligned_cols=207  Identities=19%  Similarity=0.253  Sum_probs=160.8

Q ss_pred             ccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC-----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc
Q 010769          259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS  333 (502)
Q Consensus       259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  333 (502)
                      ...+.+|.+.|++++|+.+ +.+|++++.|++|+||+++.-     ++++. .-.-+..+.+.|.|+-..++++.-...+
T Consensus        79 ~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCE
Confidence            3457899999999999999 669999999999999998753     12211 1122367889999999778888888889


Q ss_pred             EEEEeCCCCCC---cc--c-------eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe
Q 010769          334 VVMKDARISTH---SG--F-------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH  401 (502)
Q Consensus       334 i~vwd~~~~~~---~~--~-------~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  401 (502)
                      +++|-+...+-   ..  .       ...|.-.+..+-... +..++++++.|..|.+|+++ +         +.+..+.
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-G---------q~L~~id  225 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-G---------QLLQSID  225 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-C---------ceeeeec
Confidence            99998754321   11  1       112334455555554 34589999999999999999 3         6677777


Q ss_pred             cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC------CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEE
Q 010769          402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE  475 (502)
Q Consensus       402 ~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~  475 (502)
                      .....-+..+.||+| ++|++++..--|+||.+--.      +...++.+.+|...|..++|+|+.. .+++.+.||+++
T Consensus       226 tnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wr  303 (420)
T KOG2096|consen  226 TNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWR  303 (420)
T ss_pred             cccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEE
Confidence            777778889999999 99999999888999986432      2245778899999999999999998 599999999999


Q ss_pred             EEECC
Q 010769          476 IWDTL  480 (502)
Q Consensus       476 vwd~~  480 (502)
                      |||+.
T Consensus       304 iwdtd  308 (420)
T KOG2096|consen  304 IWDTD  308 (420)
T ss_pred             Eeecc
Confidence            99985

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=1.4e-18  Score=158.62  Aligned_cols=308  Identities=20%  Similarity=0.324  Sum_probs=213.1

Q ss_pred             ccccccccccCCCc-eEEEEEecCCcceeEEEEEecCCCCCC--ce-e----eeeccccCCCcceeeeecCCCCCCCCCC
Q 010769          139 SEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDGGDP--NL-Y----VHHHIIIPAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       139 ~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~~~~--~l-~----~~~~~~~~~~~~~~~w~~~~~~~s~~~~  210 (502)
                      .+.|..+.|.+++. .|++|+.+.   .+++|..+.......  .+ |    .+|+..+    .++.|       +|+|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~---~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aV----N~vRf-------~p~ge   78 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDK---DIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAV----NVVRF-------SPDGE   78 (434)
T ss_pred             CCceEEEEeccCcccceecccCcc---ceeeeeeeecCCCCCceeEEEeecccCCccee----EEEEE-------cCCcC
Confidence            35789999999877 999999887   568998876554331  11 1    2332222    46666       89999


Q ss_pred             EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~  290 (502)
                      +||+|+.+|.|.+|...........      ...     ...+........+.+|...|..++|+|+ .+++++++.|.+
T Consensus        79 lLASg~D~g~v~lWk~~~~~~~~~d------~e~-----~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns  146 (434)
T KOG1009|consen   79 LLASGGDGGEVFLWKQGDVRIFDAD------TEA-----DLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNS  146 (434)
T ss_pred             eeeecCCCceEEEEEecCcCCcccc------chh-----hhCccceEEEEEecccccchhhhhccCC-Cceeeeeeccce
Confidence            9999999999999987631111000      000     0112224445566789999999999999 679999999999


Q ss_pred             EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-------------------eEee
Q 010769          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-------------------KWAV  351 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------~~~~  351 (502)
                      +++||+..|+....+..|..-|+.++|.|.+ +++++-+.|...+.+.+...+....                   ..-|
T Consensus       147 ~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfh  225 (434)
T KOG1009|consen  147 VRLWDVHAGQLLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFH  225 (434)
T ss_pred             EEEEEeccceeEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeee
Confidence            9999999999999999999999999999998 8899999888777766553322110                   0001


Q ss_pred             ----cCCeEEEEeCCCCCCEEEEEe----CCC-----eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC--
Q 010769          352 ----AADVESLAWDPHAEHSFVVSL----EDG-----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--  416 (502)
Q Consensus       352 ----~~~v~~v~~~p~~~~~l~~~~----~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--  416 (502)
                          ..-...++|+|+|. ++++..    ..+     ..++|+-...        .+|...+.....+...+.|+|--  
T Consensus       226 DeTlksFFrRlsfTPdG~-llvtPag~~~~g~~~~~n~tYvfsrk~l--------~rP~~~lp~~~k~~lavr~~pVy~e  296 (434)
T KOG1009|consen  226 DETLKSFFRRLSFTPDGS-LLVTPAGLFKVGGGVFRNTSYVFSRKDL--------KRPAARLPSPKKPALAVRFSPVYYE  296 (434)
T ss_pred             cCchhhhhhhcccCCCCc-EEEcccceeeeCCceeeceeEeeccccc--------cCceeecCCCCcceEEEEeeeeEEE
Confidence                12356788999876 555542    122     2345544433        46667777767777777666510  


Q ss_pred             ---------------CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          417 ---------------PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       417 ---------------~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                                     ...+|.++ .+.|+|||..+..|..+. -.-|-..|+.++|+++|.+ |+.++.||...+--+..
T Consensus       297 lrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v-~nihy~~iTDiaws~dg~~-l~vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  297 LRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVV-DNIHYSAITDIAWSDDGSV-LLVSSTDGFCSLVTFEP  373 (434)
T ss_pred             eccccccccccccccceEEEEee-cceEEEeccccccceEEE-eeeeeeeecceeecCCCcE-EEEeccCCceEEEEEcc
Confidence                           12344454 456999999998875443 3557789999999999995 77788999887777766


Q ss_pred             Cccc
Q 010769          482 DAGI  485 (502)
Q Consensus       482 ~~~~  485 (502)
                      .++-
T Consensus       374 ~elg  377 (434)
T KOG1009|consen  374 WELG  377 (434)
T ss_pred             hhcc
Confidence            5543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=2.2e-18  Score=173.83  Aligned_cols=304  Identities=18%  Similarity=0.268  Sum_probs=204.7

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeecc-ccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010769          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI-IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA  220 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~  220 (502)
                      -..+.|+|-...++++....   .+.||.|+...    .|...+.. .-+.....+..++     ..+..++++|+.||.
T Consensus      1067 pk~~~~hpf~p~i~~ad~r~---~i~vwd~e~~~----~l~~F~n~~~~~t~Vs~l~liN-----e~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRE---RIRVWDWEKGR----LLNGFDNGAFPDTRVSDLELIN-----EQDDALLLTASSDGV 1134 (1387)
T ss_pred             CceeeecCCCceeEEcCCcc---eEEEEecccCc----eeccccCCCCCCCccceeeeec-----ccchhheeeeccCce
Confidence            45678889888888886333   67888887665    33333322 2233334454442     346789999999999


Q ss_pred             EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe
Q 010769          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~  300 (502)
                      ||||+-.......+..+.+-               ..+.-...+-.+.=.-+.|....+ +|++++.-..|+|||+...+
T Consensus      1135 IRIwk~y~~~~~~~eLVTaw---------------~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAW---------------SSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred             EEEecccccccCCceeEEee---------------ccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccce
Confidence            99997532110111111000               000001111112224567888856 45555557899999999888


Q ss_pred             eeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC---ccceEeecCC--eEEEEeCCCCCCEEEEEeCC
Q 010769          301 CNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAAD--VESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       301 ~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~--v~~v~~~p~~~~~l~~~~~d  374 (502)
                      +++.+. +....|+++.-+-.+++++++|..||.|++||.|....   +.....|...  |..+.+.+.|-..+++|+.+
T Consensus      1199 ~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1199 VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred             eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence            887774 34567888876655568999999999999999997654   2223345555  89999998776679999999


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCC--C-CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe----cC
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--K-AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR----NP  447 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~--~-~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~----~~  447 (502)
                      |.|++||+|...       ......+..|-  + .++++..+++. .++|+|+. +.|+||++...+...+...    ..
T Consensus      1279 G~I~~~DlR~~~-------~e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q 1349 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSS-------KETFLTIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQ 1349 (1387)
T ss_pred             CeEEEEecccCc-------ccccceeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhcccccCcccccC
Confidence            999999999842       23334444443  3 58999999987 88999998 9999999987553222211    12


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ..+.+.|++|+|... ++|+|..|.+|.||......
T Consensus      1350 ~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1350 RIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cCCCcceeeecchhH-hhhhccCCceEEEeecCCcC
Confidence            346789999999987 69999999999999876543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=3.3e-19  Score=169.74  Aligned_cols=231  Identities=19%  Similarity=0.285  Sum_probs=180.1

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .|.|.+||+|+.||+|+||.+.++.++....                            ..+.|.||+|+|.....++++
T Consensus       409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~----------------------------~d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----------------------------FDSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             cCCcceeeecCCCCcEEEEEeecceEEEEEe----------------------------ecceeEEEEecCCCCceeEEE
Confidence            6789999999999999999999887765432                            335799999999866555555


Q ss_pred             ecCCcEEEEECCCC-------------------------------------eeeEEeccCCCCeEEEEEcCCCCcEEEEE
Q 010769          286 SADKQVKIWDVAAG-------------------------------------KCNLTLEHHTDKVQAVAWNHHSPQILLSG  328 (502)
Q Consensus       286 s~Dg~v~vwd~~~~-------------------------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  328 (502)
                      +....+.|-+..-|                                     +-++..-.|...|..|.||..| .+|++.
T Consensus       461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV  539 (733)
T KOG0650|consen  461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATV  539 (733)
T ss_pred             EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEe
Confidence            55555555543211                                     0012223478899999999999 788877


Q ss_pred             EC---CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC
Q 010769          329 SF---DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK  405 (502)
Q Consensus       329 ~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~  405 (502)
                      .-   ...|.|+++........+....+.+.++.|+|..+ +|++++ -..|++||+...         ..+..+.....
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kq---------elvKkL~tg~k  608 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQ---------ELVKKLLTGSK  608 (733)
T ss_pred             ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHH---------HHHHHHhcCCe
Confidence            65   35789999987766655566778899999999877 455554 467999999875         66777777788


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      .|.+++++|.| .-|+.|+.|+.+..||+.-+. .....+..|...+++++|++.-+ |||+|+.||++.|+--
T Consensus       609 wiS~msihp~G-Dnli~gs~d~k~~WfDldlss-kPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  609 WISSMSIHPNG-DNLILGSYDKKMCWFDLDLSS-KPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHG  679 (733)
T ss_pred             eeeeeeecCCC-CeEEEecCCCeeEEEEcccCc-chhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEee
Confidence            99999999998 778889999999999998664 24667778899999999999999 7999999999988753

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.82  E-value=3.8e-18  Score=165.31  Aligned_cols=290  Identities=18%  Similarity=0.220  Sum_probs=215.9

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCC----CCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG----GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      -....|+|+++.+++-+..|   .+.+|.  ....    ..+.+.+|-+.+     ..+.|       +|.|.||++.+.
T Consensus       319 F~g~lw~~n~~~ii~~g~~G---g~hlWk--t~d~~~w~~~~~iSGH~~~V-----~dv~W-------~psGeflLsvs~  381 (764)
T KOG1063|consen  319 FWGGLWSPNSNVIIAHGRTG---GFHLWK--TKDKTFWTQEPVISGHVDGV-----KDVDW-------DPSGEFLLSVSL  381 (764)
T ss_pred             eeeEEEcCCCCEEEEecccC---cEEEEe--ccCccceeeccccccccccc-----eeeee-------cCCCCEEEEecc
Confidence            45678899999888887776   345555  2221    112333444433     46777       799999999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      |.+-|||---. .                      +.........+-|...++|++|-+. +..+++|.....+|+|+..
T Consensus       382 DQTTRlFa~wg-~----------------------q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aP  437 (764)
T KOG1063|consen  382 DQTTRLFARWG-R----------------------QQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAP  437 (764)
T ss_pred             ccceeeecccc-c----------------------ccceeeecccccccccceeeehccC-CceeeecccceeeeeecCc
Confidence            99999986431 0                      0112223344568889999999885 5689999999999999753


Q ss_pred             -------------------------------------------CCee---------------------------------
Q 010769          298 -------------------------------------------AGKC---------------------------------  301 (502)
Q Consensus       298 -------------------------------------------~~~~---------------------------------  301 (502)
                                                                 +|..                                 
T Consensus       438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE  517 (764)
T KOG1063|consen  438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE  517 (764)
T ss_pred             HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence                                                       0000                                 


Q ss_pred             eEEeccCCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          302 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       302 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      ++.+.+|...|.+++.+|++ +++++++...     .|++|+..+-........|.-.|+.++|+|++. +|++.+.|.+
T Consensus       518 v~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~-~LLsvsRDRt  595 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR-YLLSVSRDRT  595 (764)
T ss_pred             hHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCc-EEEEeecCce
Confidence            01234688899999999999 9999988654     589999988777776778999999999999876 8999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC--CeeEEEEecCCCCCEEE
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--QPSCIASRNPKAGAVFS  454 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~  454 (502)
                      +.+|.........     ........|+.-|..+.|+|+. .+++|+|.|++|+||.....  +..+......+..+|+.
T Consensus       596 ~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~pde-~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA  669 (764)
T KOG1063|consen  596 VSLYEVQEDIKDE-----FRFACLKAHTRIIWDCSWSPDE-KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA  669 (764)
T ss_pred             EEeeeeecccchh-----hhhccccccceEEEEcccCccc-ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence            9999986542111     1223377899999999999998 88999999999999999887  32222234557788999


Q ss_pred             EEEcCC----CCcEEEEEeCCCcEEEEECC
Q 010769          455 VAFSED----SPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       455 ~~~spd----~~~llasg~~dg~i~vwd~~  480 (502)
                      ++|.|-    ..++++.|-..|.|.||...
T Consensus       670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             EEeeccccccccceEEEEecccEEEEEecc
Confidence            999773    34488999999999999976

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=4.5e-18  Score=154.60  Aligned_cols=230  Identities=19%  Similarity=0.291  Sum_probs=172.6

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      +.+.|.++      +.+.||+|+.|.+|.||.+.......+                    .......+.+|+..|--++
T Consensus        85 LDi~w~Pf------nD~vIASgSeD~~v~vW~IPe~~l~~~--------------------ltepvv~L~gH~rrVg~V~  138 (472)
T KOG0303|consen   85 LDIDWCPF------NDCVIASGSEDTKVMVWQIPENGLTRD--------------------LTEPVVELYGHQRRVGLVQ  138 (472)
T ss_pred             cccccCcc------CCceeecCCCCceEEEEECCCcccccC--------------------cccceEEEeecceeEEEEe
Confidence            67888643      688999999999999999964332221                    1344556779999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  353 (502)
                      |+|...+.|+|++.|.+|.+|++.+|..+.++. |...|+++.|+.+| .+|++++.|..|+|||.|++........|.+
T Consensus       139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG  216 (472)
T KOG0303|consen  139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG  216 (472)
T ss_pred             ecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccC
Confidence            999999999999999999999999999998888 99999999999999 8999999999999999999987765545543


Q ss_pred             -CeEEEEeCCCCCCEEEEEe---CCCeEEEEECCCCCCCCCCCCCCccE-EEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769          354 -DVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       354 -~v~~v~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                       ....+.|-.++. ++.+|.   .+..+.+||..+..        .++. .-...+..|.---|.|+..-+.++|-.|+.
T Consensus       217 ~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~--------eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  217 AKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLE--------EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             CCcceeEEeccCc-eeeeccccccccceeccCccccc--------CcceeEEeccCCceEEeeecCCCCEEEEEecCCcc
Confidence             456677777665 555553   56789999988763        3322 222344566666788877344445556999


Q ss_pred             EEEEECCCCCeeE--EEEecCCCCCEEEEEEcCCC
Q 010769          429 VKLWDLSNNQPSC--IASRNPKAGAVFSVAFSEDS  461 (502)
Q Consensus       429 i~vwd~~~~~~~~--~~~~~~~~~~v~~~~~spd~  461 (502)
                      |+.|.+....|..  +.++. ...+-..+.|-|..
T Consensus       288 IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  288 IRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKR  321 (472)
T ss_pred             eEEEEecCCCceeEEecccc-cCCccccccccccc
Confidence            9999998876421  22222 23445567777764

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=3.3e-18  Score=161.04  Aligned_cols=275  Identities=17%  Similarity=0.251  Sum_probs=189.8

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      |.+.|.++.|+.+...+.++...      .+..+.............   +-..+|..+---............|+.++.
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dDh------~~~~~~~~~~~s~~~~~~---p~df~pt~~h~~~rs~~~g~~~d~~~i~s~   83 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDDH------QIFKWSDVSRDSVEVAKL---PDDFVPTDMHLGGRSSGGGKGSDTLLICSN   83 (737)
T ss_pred             cceeEEeecccccceEEEeccCc------eEEEeecccchhhhhhhC---CcccCCccccccccccCCCCCcceEEEEcC
Confidence            56677888888888777766533      333333322211111111   111122222100111111233567888999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      ||.+.|.+-.                            .+.......|.++|.|-.|+|+ +.-|++++.||.|++|. +
T Consensus        84 DGkf~il~k~----------------------------~rVE~sv~AH~~A~~~gRW~~d-GtgLlt~GEDG~iKiWS-r  133 (737)
T KOG1524|consen   84 DGRFVILNKS----------------------------ARVERSISAHAAAISSGRWSPD-GAGLLTAGEDGVIKIWS-R  133 (737)
T ss_pred             CceEEEeccc----------------------------chhhhhhhhhhhhhhhcccCCC-CceeeeecCCceEEEEe-c
Confidence            9999887632                            2333345689999999999999 45888999999999998 5


Q ss_pred             CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeE
Q 010769          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i  377 (502)
                      +|-...++.....+|.|++|.|+..+.+++.+  +.+.+=.+.....+..-..|.+-|.++.|++.+. ++++|++|-..
T Consensus       134 sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kf  210 (737)
T KOG1524|consen  134 SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRF  210 (737)
T ss_pred             cchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeE
Confidence            66555555556789999999999977776654  5666666665555544457888999999999865 89999999999


Q ss_pred             EEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEE
Q 010769          378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF  457 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~  457 (502)
                      ++||..          ..+++.-..|..+|++++|+|+  ..++.+|.. +++             --.+..|.|+.++|
T Consensus       211 KvWD~~----------G~~Lf~S~~~ey~ITSva~npd--~~~~v~S~n-t~R-------------~~~p~~GSifnlsW  264 (737)
T KOG1524|consen  211 KIWDAQ----------GANLFTSAAEEYAITSVAFNPE--KDYLLWSYN-TAR-------------FSSPRVGSIFNLSW  264 (737)
T ss_pred             Eeeccc----------CcccccCChhccceeeeeeccc--cceeeeeee-eee-------------ecCCCccceEEEEE
Confidence            999987          3678888899999999999996  455555532 233             12345688999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCC
Q 010769          458 SEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       458 spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      |+||.. +++|...|.+.+=-+-.
T Consensus       265 S~DGTQ-~a~gt~~G~v~~A~~ie  287 (737)
T KOG1524|consen  265 SADGTQ-ATCGTSTGQLIVAYAIE  287 (737)
T ss_pred             cCCCce-eeccccCceEEEeeeeh
Confidence            999995 88888888776544433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=1.1e-16  Score=159.93  Aligned_cols=296  Identities=24%  Similarity=0.434  Sum_probs=210.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCC-EEEEe
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~-~la~g  215 (502)
                      .+...+..+.+.+.+..++.++.++   .+.+|.+.........+..++...+    ..+.+     . ++++. +++..
T Consensus        63 ~~~~~i~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~-~~~~~~~~~~~  129 (466)
T COG2319          63 GHEDSITSIAFSPDGELLLSGSSDG---TIKLWDLDNGEKLIKSLEGLHDSSV----SKLAL-----S-SPDGNSILLAS  129 (466)
T ss_pred             eccceEEEEEECCCCcEEEEecCCC---cEEEEEcCCCceeEEEEeccCCCce----eeEEE-----E-CCCcceEEecc
Confidence            4778899999999999999998665   4566665554310111112121001    11111     1 24555 55554


Q ss_pred             -cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec-CCcEEE
Q 010769          216 -SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKI  293 (502)
Q Consensus       216 -~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~-Dg~v~v  293 (502)
                       ..++.+.+|++...                          ......+..|...|.+++|+|++. .+++++. ++.+++
T Consensus       130 ~~~d~~~~~~~~~~~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~  182 (466)
T COG2319         130 SSLDGTVKLWDLSTP--------------------------GKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKL  182 (466)
T ss_pred             CCCCccEEEEEecCC--------------------------CeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEE
Confidence             44899999998740                          122334557999999999999954 7777775 999999


Q ss_pred             EECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecCCeEEEEeCCCCCCEEEEEe
Q 010769          294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~  372 (502)
                      |++..+..+..+.+|...|.+++|+|++..++++++.|+.|++||.+...... ....+.... ...|+|.+ .++++++
T Consensus       183 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~  260 (466)
T COG2319         183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGS  260 (466)
T ss_pred             EEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEec
Confidence            99999889999999999999999999884355566999999999888554443 233444443 33899987 5788999


Q ss_pred             CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCE
Q 010769          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      .++.+++|+++...        ..+..+..|...+.++.|+|.+ ..+++++.|+.+++|++.............|...+
T Consensus       261 ~d~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (466)
T COG2319         261 SDGTIRLWDLRSSS--------SLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV  331 (466)
T ss_pred             CCCcEEEeeecCCC--------cEEEEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence            99999999999762        2234446789999999999976 66777888988999998887643333334677789


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       453 ~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ..+.|.+++..++.++..++.+.+|++....
T Consensus       332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            9999943324334443678899999998876

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.80  E-value=2.6e-18  Score=164.55  Aligned_cols=256  Identities=15%  Similarity=0.242  Sum_probs=188.1

Q ss_pred             CCCCEEEE--ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          207 EKGNFMAV--GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       207 ~~~~~la~--g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      .+..++|+  .+.-|.|-||+++....+..-.+ .                     .+ -....|+.+.|.|-....||.
T Consensus       589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~-p---------------------~l-~Ngt~vtDl~WdPFD~~rLAV  645 (1012)
T KOG1445|consen  589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVM-P---------------------GL-FNGTLVTDLHWDPFDDERLAV  645 (1012)
T ss_pred             eccceEEEEecCCCceEEEEEcCCCCCCCcccc-c---------------------cc-ccCceeeecccCCCChHHeee
Confidence            34556665  44568999999975432221110 0                     11 134679999999988889999


Q ss_pred             EecCCcEEEEECCCC-------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEE
Q 010769          285 ASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES  357 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  357 (502)
                      ++.||.|++|.+..+       .+...+..|..+|+++.|||-...+|+++++|-+|++||+++......+.+|...|..
T Consensus       646 a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~  725 (1012)
T KOG1445|consen  646 ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFG  725 (1012)
T ss_pred             cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeE
Confidence            999999999998754       3556778899999999999998899999999999999999999888888899999999


Q ss_pred             EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-CCeeEEEEcCCCCCEEEEEeCC----CcEEEE
Q 010769          358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTD----KMVKLW  432 (502)
Q Consensus       358 v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~d----g~i~vw  432 (502)
                      ++|+|+|. .+++.+.||+|++|.-+..        ..+++.-.+.. ..-..|.|.-+| +++++.+.|    .+|.+|
T Consensus       726 ~AWSpdGr-~~AtVcKDg~~rVy~Prs~--------e~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y  795 (1012)
T KOG1445|consen  726 IAWSPDGR-RIATVCKDGTLRVYEPRSR--------EQPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQMY  795 (1012)
T ss_pred             EEECCCCc-ceeeeecCceEEEeCCCCC--------CCccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhhh
Confidence            99999986 7999999999999999987        35554443322 234567788888 777776665    458899


Q ss_pred             ECCCCCeeEEE--EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCCC
Q 010769          433 DLSNNQPSCIA--SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK  496 (502)
Q Consensus       433 d~~~~~~~~~~--~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  496 (502)
                      |..+-....+.  .+..... +.--.+.+|...+|++|-.|..|.+|.+.-.....-.+.++..+.
T Consensus       796 ~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~  860 (1012)
T KOG1445|consen  796 DAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPV  860 (1012)
T ss_pred             hhhhccCCcceeeeecccCc-cccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCC
Confidence            87764322222  2222111 222345677777899999999999999977666544444444443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.3e-18  Score=162.51  Aligned_cols=229  Identities=23%  Similarity=0.326  Sum_probs=172.2

Q ss_pred             ccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe-ccCCCCeEEEEEcCCC-CcEEEEEECCCcEEEEe
Q 010769          261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKD  338 (502)
Q Consensus       261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd  338 (502)
                      .+.||++.|+||.|+.+ +.+|+|||.|-.+.|||.-..+.++.+ .+|...|.++.|-|.. ..++++|..|..|++||
T Consensus        45 eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            56699999999999999 569999999999999999988888888 6899999999999854 36889999999999999


Q ss_pred             CCCCCC----------ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCC-CCCccEEEecCCCCe
Q 010769          339 ARISTH----------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST-SQQSSFTLHAHDKAV  407 (502)
Q Consensus       339 ~~~~~~----------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~h~~~v  407 (502)
                      +...+.          ......|...|..++-.|.+++.|.++++||+|+-||+|......... ....+......--..
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel  203 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL  203 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence            985221          122234667788899999999999999999999999999863211110 011111222223456


Q ss_pred             eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----------------eEEEEe-cCCC-----------CCEEEEEEcC
Q 010769          408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------------SCIASR-NPKA-----------GAVFSVAFSE  459 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----------------~~~~~~-~~~~-----------~~v~~~~~sp  459 (502)
                      .|+.++|..+.+|++|+.|-..++||.+...+                .++..+ .+|.           ..++-+.|+|
T Consensus       204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp  283 (758)
T KOG1310|consen  204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP  283 (758)
T ss_pred             eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence            88999999999999999999999999543110                012211 1121           1256788999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          460 DSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       460 d~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +|.-+|++-+.+ .|+++|+..++.....+..
T Consensus       284 NGtElLvs~~gE-hVYlfdvn~~~~~~~y~~~  314 (758)
T KOG1310|consen  284 NGTELLVSWGGE-HVYLFDVNEDKSPTPYFLP  314 (758)
T ss_pred             CCcEEEEeeCCe-EEEEEeecCCCCceeecCc
Confidence            998877766555 7999999998887766654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=2.2e-18  Score=163.42  Aligned_cols=265  Identities=20%  Similarity=0.339  Sum_probs=188.3

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC---C--CC--ceeeeeccccCCCcceeeeecCCCCCCCCC
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG---G--DP--NLYVHHHIIIPAFPLCMAWLDCPLKDREKG  209 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~---~--~~--~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~  209 (502)
                      .|.+.|.++.|+|....|++|+.++   .|++|.+.....   .  ++  .++.|.     +..+|+..       ++++
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed~---~lk~WnLqk~~~s~~~~~epi~tfraH~-----gPVl~v~v-------~~n~  356 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASEDG---TLKLWNLQKAKKSAEKDVEPILTFRAHE-----GPVLCVVV-------PSNG  356 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEecccc---chhhhhhcccCCccccceeeeEEEeccc-----CceEEEEe-------cCCc
Confidence            3678899999999999999999887   789999832111   0  01  112222     23367765       6789


Q ss_pred             CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC
Q 010769          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  289 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg  289 (502)
                      ..+.+|+.||+|+.|++....  .|.               ...........+.||+++|+.+++++. ...|++||.||
T Consensus       357 ~~~ysgg~Dg~I~~w~~p~n~--dp~---------------ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~Dg  418 (577)
T KOG0642|consen  357 EHCYSGGIDGTIRCWNLPPNQ--DPD---------------DSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDG  418 (577)
T ss_pred             eEEEeeccCceeeeeccCCCC--Ccc---------------cccCcchhccceeccccceeeeeeccc-ccceeeecCCc
Confidence            999999999999999886211  111               011123445567899999999999998 66899999999


Q ss_pred             cEEEEECCCCeeeEEecc--CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-------eecCCeEEEEe
Q 010769          290 QVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAW  360 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~v~~  360 (502)
                      +|++|+.....+ .+|..  ..+..+++.+-.......++...-+.-.++++........+.       .....+..+.+
T Consensus       419 Tvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs  497 (577)
T KOG0642|consen  419 TVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS  497 (577)
T ss_pred             eEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe
Confidence            999999876655 44422  223345566554442334444444444444444333222111       11245788899


Q ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       361 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      +|..+ +.+++..++.|+++|..++         .++....+|...++++++.|+| .+|++++.|+.+++|.+....  
T Consensus       498 ~~~~~-~~~~~hed~~Ir~~dn~~~---------~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~--  564 (577)
T KOG0642|consen  498 HPTAD-ITFTAHEDRSIRFFDNKTG---------KILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT--  564 (577)
T ss_pred             cCCCC-eeEecccCCceeccccccc---------ccchheeeccceecceeecCCC-ceEEeecCCceeehhhccchh--
Confidence            99875 8999999999999999997         8899999999999999999998 899999999999999987665  


Q ss_pred             EEEEecCC
Q 010769          441 CIASRNPK  448 (502)
Q Consensus       441 ~~~~~~~~  448 (502)
                      ++.....|
T Consensus       565 ~~~es~~~  572 (577)
T KOG0642|consen  565 CVLESTAH  572 (577)
T ss_pred             eeeccccc
Confidence            45554444

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7.8e-18  Score=150.50  Aligned_cols=198  Identities=18%  Similarity=0.263  Sum_probs=157.2

Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCC-CCcEEEEEECCCcEEEEeCCCCCCccce-Eeec--CCe
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH-SPQILLSGSFDRSVVMKDARISTHSGFK-WAVA--ADV  355 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~--~~v  355 (502)
                      +.+|++...|+|++||..+++.+..|+++...+..+.|... ++..+.+|+.||+|++||+|........ +...  .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            57888888999999999999999999999999999999774 6688999999999999999987655433 2222  356


Q ss_pred             EEEEeCCCCCCEEEEEe----CCCeEEEEECCCCCCCCCCCCCCccEE-EecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          356 ESLAWDPHAEHSFVVSL----EDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      .|++.+-. .+++++|+    .+-.|.+||+|..        .+++.. ...|..-|++++|+|..+++|++||.||.|.
T Consensus       121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~--------qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn  191 (376)
T KOG1188|consen  121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSE--------QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN  191 (376)
T ss_pred             eEeeccCc-CCeEEeccccccCceEEEEEEeccc--------cchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence            66666544 34677765    4678999999987        343433 4679999999999999999999999999999


Q ss_pred             EEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          431 LWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       431 vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      |||+..... -.+.....+...|.++.|..++-..|.+-+..+++.+|++..+.+..
T Consensus       192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~  248 (376)
T KOG1188|consen  192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET  248 (376)
T ss_pred             eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence            999976421 12333445677899999999883347777888999999999888654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.8e-17  Score=138.02  Aligned_cols=243  Identities=16%  Similarity=0.229  Sum_probs=172.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|.+++|++|+.+|.|.|+.+.......                 .+.+.+.+....++|.++|..++|..+   +|++|
T Consensus        19 sp~~~~l~agn~~G~iav~sl~sl~s~s-----------------a~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~   78 (325)
T KOG0649|consen   19 SPSKQYLFAGNLFGDIAVLSLKSLDSGS-----------------AEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSG   78 (325)
T ss_pred             CCcceEEEEecCCCeEEEEEehhhhccc-----------------cCCCCCcceeeccccCCCeeeeeeehh---heeec
Confidence            7889999999999999999987533211                 112234445566899999999999844   67777


Q ss_pred             ecCCcEEEEECCCCe------eeEEe--ccC-----CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769          286 SADKQVKIWDVAAGK------CNLTL--EHH-----TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~------~~~~~--~~h-----~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      +. |.|+-|..+...      .+...  ..|     -..|+++...|..+. ++.++.|+.++-||+.+++......+|.
T Consensus        79 gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHt  156 (325)
T KOG0649|consen   79 GD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHT  156 (325)
T ss_pred             cC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence            65 999998765321      11111  112     246889999998845 4555589999999999999988888999


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-CCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      ..+.++.-...++ .+++|++||++++||+++.+........+....+..| ...|-+++.+.   .+|++|+. ..+.+
T Consensus       157 DYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGgG-p~lsl  231 (325)
T KOG0649|consen  157 DYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGGG-PKLSL  231 (325)
T ss_pred             ceeeeeeecccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecCC-CceeE
Confidence            9999998844334 6999999999999999998542222111111222223 34577777664   67777664 56999


Q ss_pred             EECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      |.++..++.+++.+.+|   +..+.|..+   .++++|..+.|.-|.+..
T Consensus       232 whLrsse~t~vfpipa~---v~~v~F~~d---~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  232 WHLRSSESTCVFPIPAR---VHLVDFVDD---CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             EeccCCCceEEEecccc---eeEeeeecc---eEEEeccccceeeeeecc
Confidence            99999998888877754   777788776   355677677788887754

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4.5e-17  Score=147.83  Aligned_cols=294  Identities=14%  Similarity=0.218  Sum_probs=209.4

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC----CCCceeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG----GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~  211 (502)
                      -+|..-|++++|+.++++||+|+.+.   ++.||..+...-    ....+..||.   .+-.+|+++       .....+
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~---~~~~W~~de~~~~k~~KPI~~~~~~H---~SNIF~L~F-------~~~N~~  119 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDM---HGRVWNVDELMVRKTPKPIGVMEHPH---RSNIFSLEF-------DLENRF  119 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcc---eeeeechHHHHhhcCCCCceeccCcc---ccceEEEEE-------ccCCee
Confidence            46889999999999999999998665   667777664221    1112333332   223378877       456789


Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v  291 (502)
                      |.+|+.+++|.+.|+.+.+.+..+                         ......+.|..+..+|. .+.|++.+.++.|
T Consensus       120 ~~SG~~~~~VI~HDiEt~qsi~V~-------------------------~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V  173 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQSIYVA-------------------------NENNNRGDVYHMDQHPT-DNTLIVVTRAKLV  173 (609)
T ss_pred             EecCCCcceeEeeecccceeeeee-------------------------cccCcccceeecccCCC-CceEEEEecCceE
Confidence            999999999999999864433221                         11123358999999999 7899999999999


Q ss_pred             EEEECCCCe-eeE--EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE----eecC---CeEEEEeC
Q 010769          292 KIWDVAAGK-CNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAA---DVESLAWD  361 (502)
Q Consensus       292 ~vwd~~~~~-~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~~~~---~v~~v~~~  361 (502)
                      .+||.+..+ .+.  .+........++.|+|..+.+|++.+..+-+.+||.|.+.......    ..+.   .-..+.|+
T Consensus       174 ~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~  253 (609)
T KOG4227|consen  174 SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS  253 (609)
T ss_pred             EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence            999998654 222  2233456788899999999999999999999999999876544322    2222   23568899


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-------CCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      |.|. .|++-.....-.+||+-..        ..+++.+. |.       ..+.+++|..+  ..+++|+.+-.|++|.+
T Consensus       254 ~~G~-Q~msiRR~~~P~~~D~~S~--------R~~V~k~D-~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~Wkl  321 (609)
T KOG4227|consen  254 PSGN-QFMSIRRGKCPLYFDFISQ--------RCFVLKSD-HNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKL  321 (609)
T ss_pred             CCCC-eehhhhccCCCEEeeeecc--------cceeEecc-CCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEec
Confidence            9876 5555555555667887654        12333333 22       24566777764  56999999999999988


Q ss_pred             CCCC---------------------eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          435 SNNQ---------------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       435 ~~~~---------------------~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ....                     ...+..+.+|..-+..+.|+|... +|+++|-...++||.-..
T Consensus       322 P~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  322 PRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN-LLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             CCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc-eEeccchhhheecccccc
Confidence            5421                     012456788999999999999876 799999999999997643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4.7e-17  Score=147.72  Aligned_cols=244  Identities=15%  Similarity=0.193  Sum_probs=180.7

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      ||.++++||+|+.|..+++|+++..-                    ..+..+.+...-..|...|.||+|+.. ..+|++
T Consensus        64 FS~N~~~L~SGGDD~~~~~W~~de~~--------------------~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~S  122 (609)
T KOG4227|consen   64 FSHNDRFLASGGDDMHGRVWNVDELM--------------------VRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYS  122 (609)
T ss_pred             eccCCeEEeecCCcceeeeechHHHH--------------------hhcCCCCceeccCccccceEEEEEccC-CeeEec
Confidence            38889999999999999999986310                    011112222333467789999999987 569999


Q ss_pred             EecCCcEEEEECCCCeeeEEecc--CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce---EeecCCeEEEE
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLA  359 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~v~  359 (502)
                      |..+++|.+.|+.+.+.+..+..  ..+.|..+..+|.. +.|++.+.++.|.+||.|........   ........++.
T Consensus       123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~  201 (609)
T KOG4227|consen  123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE  201 (609)
T ss_pred             CCCcceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence            99999999999999988887752  23589999999997 89999999999999999976532222   23355678899


Q ss_pred             eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC------CCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      |+|..+.++++.+..+-+.+||.|...        .++....+.      ...-.++.|+|+| +.|.+--.-..-.+||
T Consensus       202 F~P~~P~Li~~~~~~~G~~~~D~R~~~--------~~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D  272 (609)
T KOG4227|consen  202 FHPETPALILVNSETGGPNVFDRRMQA--------RPVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFD  272 (609)
T ss_pred             ecCCCceeEEeccccCCCCceeecccc--------chHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEee
Confidence            999999999999999999999999873        344332221      2223578899998 5666655555667889


Q ss_pred             CCCCCeeEEEEecCC------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          434 LSNNQPSCIASRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~------~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      +-..+. .++.+...      ...+.+++|..+..  +++|+.+-.|++|.+...
T Consensus       273 ~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  273 FISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             eecccc-eeEeccCCCCcceeeeeeeeeeeeccee--eeccCcccceEEEecCCC
Confidence            887653 33343321      12466788887754  899999999999998543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.77  E-value=9.3e-17  Score=159.89  Aligned_cols=267  Identities=17%  Similarity=0.215  Sum_probs=187.7

Q ss_pred             ccccccccccCCCceEEE-EEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          139 SEDLEDMTINPNDAVIVC-ARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~-~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      ...|.++.|+|....+++ |+.+|   .+-+|.........+....-+....+...+.+.|+..     +.+.-+++++.
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~G---qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~-----~~~~~f~s~ss  313 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNG---QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN-----EHNTEFFSLSS  313 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCc---eEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc-----CCCCceEEEec
Confidence            457999999999765555 45555   4555555544432123333344444556678888752     33366888888


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE--
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD--  295 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd--  295 (502)
                      ||.|..|+++..........+..               .........-...+++++|.+...+.++.|+..|.|..=.  
T Consensus       314 DG~i~~W~~~~l~~P~e~~~~~~---------------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  314 DGSICSWDTDMLSLPVEGLLLES---------------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK  378 (555)
T ss_pred             CCcEeeeeccccccchhhccccc---------------ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence            99999998865333211111110               0000011123467899999998888999999999988733  


Q ss_pred             -CCCCe-----eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC-CCCCccceEeecCCeEEEEeCCCCCCEE
Q 010769          296 -VAAGK-----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR-ISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       296 -~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~v~~~p~~~~~l  368 (502)
                       .....     .+..+..|.++|.++.++|-+..+|++++ |-+++||... ..............+++++|+|..+.+|
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF  457 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF  457 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence             22221     23355678999999999999977777777 9999999988 4444443445556699999999999899


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      +++..+|.|.+||+....       ..++.+...+....+.+.|++.| .+|++|...|++++|++...
T Consensus       458 ~~~d~~G~l~iWDLl~~~-------~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  458 ATVDGDGNLDIWDLLQDD-------EEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             EEEcCCCceehhhhhccc-------cCCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCch
Confidence            999999999999998764       36666666667778888999988 99999999999999999643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.76  E-value=3.5e-17  Score=145.58  Aligned_cols=217  Identities=17%  Similarity=0.310  Sum_probs=168.6

Q ss_pred             CcccceeeEEecCC---CCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769          264 SHTDSVLGLAWNKE---FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       264 ~h~~~V~~l~~~~~---~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  340 (502)
                      .|......++|+-+   +..+||.|+.-|.|+|.|+.++++...+.+|...|+.+.++|..++++++++.|.+|++|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            36677788888643   345889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceE---eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCC------------------CCCCCCCccE-
Q 010769          341 ISTHSGFKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD------------------PDSTSQQSSF-  398 (502)
Q Consensus       341 ~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~------------------~~~~~~~~~~-  398 (502)
                      +..++..+-   +|...|.++.|++++. ++++++.|.+|++|++......                  +.....-+.+ 
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence            998876544   5788899999999987 8999999999999999843210                  0000111222 


Q ss_pred             EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-C-----------eeEEEEecCCCCCEEEEE--EcCCCCcE
Q 010769          399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN-Q-----------PSCIASRNPKAGAVFSVA--FSEDSPFV  464 (502)
Q Consensus       399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~-~-----------~~~~~~~~~~~~~v~~~~--~spd~~~l  464 (502)
                      +-..|...|-|+.|--   .++++-|-++.|..|..... +           ...+..+......|+-+.  |.|-+. +
T Consensus       246 t~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~  321 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-M  321 (385)
T ss_pred             ccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-H
Confidence            3346888899998883   78999899999999987211 1           112333444445565554  456677 6


Q ss_pred             EEEEeCCCcEEEEECCCCccc
Q 010769          465 LAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       465 lasg~~dg~i~vwd~~~~~~~  485 (502)
                      ||.|+..|.|.+||+......
T Consensus       322 la~gnq~g~v~vwdL~~~ep~  342 (385)
T KOG1034|consen  322 LALGNQSGKVYVWDLDNNEPP  342 (385)
T ss_pred             HhhccCCCcEEEEECCCCCCc
Confidence            999999999999999988874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=2.2e-15  Score=146.15  Aligned_cols=242  Identities=11%  Similarity=0.126  Sum_probs=152.4

Q ss_pred             CCCCCEEEEec-CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          206 REKGNFMAVGS-MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~~la~g~-~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +|++++|++++ .++.|.+|+++....+...                    .  ..   ........++|+|+++ +|++
T Consensus        43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~--------------------~--~~---~~~~~p~~i~~~~~g~-~l~v   96 (330)
T PRK11028         43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFA--------------------A--ES---PLPGSPTHISTDHQGR-FLFS   96 (330)
T ss_pred             CCCCCEEEEEECCCCcEEEEEECCCCceEEe--------------------e--ee---cCCCCceEEEECCCCC-EEEE
Confidence            89999987764 4789999998621111100                    0  00   1123457899999955 5555


Q ss_pred             Ee-cCCcEEEEECCC-C---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc------ceEeecC
Q 010769          285 AS-ADKQVKIWDVAA-G---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------FKWAVAA  353 (502)
Q Consensus       285 gs-~Dg~v~vwd~~~-~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~  353 (502)
                      ++ .++.|.+|++.+ +   +.+..+. +.....+++++|++..++++...++.|.+||+.+.....      .......
T Consensus        97 ~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~  175 (330)
T PRK11028         97 ASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA  175 (330)
T ss_pred             EEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC
Confidence            54 589999999974 2   2233333 234567789999994455666677999999997633221      0112344


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC------CCCeeEEEEcCCCCCEEEEEe-CC
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGS-TD  426 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~t~s-~d  426 (502)
                      ....+.|+|++..++++...++.|.+|++......     ...+..+..+      ......+.++|++ ++|+++. .+
T Consensus       176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~~~~  249 (330)
T PRK11028        176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE-----IECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACDRTA  249 (330)
T ss_pred             CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-----EEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEecCCC
Confidence            56789999988744444445999999999742100     1222222221      1233468899998 6777664 47


Q ss_pred             CcEEEEECCCCC--eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          427 KMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       427 g~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      +.|.+|++....  ...+..... ......+.|+|+|++++++...+++|.+|++..
T Consensus       250 ~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        250 SLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            899999986533  112222221 124557899999998777666689999998853

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.76  E-value=2.5e-17  Score=142.34  Aligned_cols=290  Identities=16%  Similarity=0.232  Sum_probs=189.0

Q ss_pred             CCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCC
Q 010769          128 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       128 d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~  207 (502)
                      ||+..++  .|...|+++.|..+++ |.+|...|   .+.+|.+..... .+.+..++.       .++.|+..    -|
T Consensus         5 dP~fvLR--p~~~~v~s~~fqa~~r-L~sg~~~G---~V~~w~lqt~r~-~~~~r~~g~-------~~it~lq~----~p   66 (323)
T KOG0322|consen    5 DPFFVLR--PHSSSVTSVLFQANER-LMSGLSVG---IVKMWVLQTERD-LPLIRLFGR-------LFITNLQS----IP   66 (323)
T ss_pred             CCeeEec--cccchheehhhccchh-hhcccccc---eEEEEEeecCcc-chhhhhhcc-------ceeeceee----cC
Confidence            5655554  4778999999999998 56676555   789999987654 112222332       45556543    23


Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                       +..|.+-+.|+.+.+|++......                              .-|.-.++++-|.+.   -+...+.
T Consensus        67 -~d~l~tqgRd~~L~lw~ia~s~~i------------------------------~i~Si~~nslgFCrf---Sl~~~~k  112 (323)
T KOG0322|consen   67 -NDSLDTQGRDPLLILWTIAYSAFI------------------------------SIHSIVVNSLGFCRF---SLVKKPK  112 (323)
T ss_pred             -CcchhhcCCCceEEEEEccCcceE------------------------------EEeeeeccccccccc---eeccCCC
Confidence             367888889999999999742111                              124444555555443   1111111


Q ss_pred             CC-c-----------EEEEECCCCeeeEEe----ccCCCCeEEEEEcCCCC--cEEEEEECCCcEEEEeCCCCCCc----
Q 010769          288 DK-Q-----------VKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHS----  345 (502)
Q Consensus       288 Dg-~-----------v~vwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~----  345 (502)
                      .. .           +.+-|......++..    .+..+.+.|..|.....  -+|++|..+|.+.+||+.++...    
T Consensus       113 ~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~  192 (323)
T KOG0322|consen  113 NSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP  192 (323)
T ss_pred             cchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc
Confidence            10 1           122222211112211    12345677777543322  35677888999999999986322    


Q ss_pred             ------cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCE
Q 010769          346 ------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       346 ------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                            .....|..+|.++.+.+.-. .=++|+.+..+..|.+.-.....     +....+....-.|..+.+-|++ +.
T Consensus       193 ~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gsl-----q~~~e~~lknpGv~gvrIRpD~-KI  265 (323)
T KOG0322|consen  193 QSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSL-----QIRKEITLKNPGVSGVRIRPDG-KI  265 (323)
T ss_pred             cccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcc-----cccceEEecCCCccceEEccCC-cE
Confidence                  22335778899999987433 45666777778888876542111     1122223334568899999998 99


Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      +||++.|+.||||+.++.+|  +..+..|.+.|++++|+|+.+ ++|+++.|++|.+|++
T Consensus       266 lATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  266 LATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL  322 (323)
T ss_pred             EeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence            99999999999999999985  555667889999999999988 7999999999999986

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=8.9e-16  Score=153.26  Aligned_cols=307  Identities=16%  Similarity=0.210  Sum_probs=201.2

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      -..+.+++.+.+.+......    +.+|.......  .......||...    ..|.+.       ||+++++|+|..||
T Consensus       163 ~~~I~~~~~ge~~~i~~~~~----~~~~~v~~~~~~~~~~~~~~~Htf~----~t~~~~-------spn~~~~Aa~d~dG  227 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHMCK----IHIYFVPKHTKHTSSRDITVHHTFN----ITCVAL-------SPNERYLAAGDSDG  227 (792)
T ss_pred             CccEEEcCCceEEEEEEeee----EEEEEecccceeeccchhhhhhccc----ceeEEe-------ccccceEEEeccCC
Confidence            56788889999888887663    34444444221  111223455433    245444       89999999999999


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .|.+|.--..                       .........+.-|...|++++|+++| .+|+||+..|.+.+|.+.++
T Consensus       228 rI~vw~d~~~-----------------------~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  228 RILVWRDFGS-----------------------SDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             cEEEEecccc-----------------------ccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCC
Confidence            9999974320                       01112222445688999999999995 59999999999999999998


Q ss_pred             eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-----------eEeecCCeEEEEeCCCCCCEE
Q 010769          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-----------KWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----------~~~~~~~v~~v~~~p~~~~~l  368 (502)
                      + .+-+..-.++|..+.++|++ .+.+....|+.|.+...........           .....+-.+.++++|. .+.+
T Consensus       284 ~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~  360 (792)
T KOG1963|consen  284 K-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSL  360 (792)
T ss_pred             C-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCce
Confidence            8 34445568899999999999 7777777899999887643222111           1112334667888884 3467


Q ss_pred             EEEeCCCeEEEEECCCCCCCCC------------------------------------------CC------------CC
Q 010769          369 VVSLEDGTIKGFDIRTAKSDPD------------------------------------------ST------------SQ  394 (502)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~------------------------------------------~~------------~~  394 (502)
                      +..+..|.|++||+.+......                                          ..            ..
T Consensus       361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~  440 (792)
T KOG1963|consen  361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN  440 (792)
T ss_pred             eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence            7778889999998876543000                                          00            00


Q ss_pred             CccE-----EEecCCCCeeEEEEcC-CCCCEEEEEeCCCcEEEEECCCC--------CeeEEEEecCCCCCEEEEEEcCC
Q 010769          395 QSSF-----TLHAHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNN--------QPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       395 ~~~~-----~~~~h~~~v~~l~~sp-~~~~~l~t~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ..-+     ....|...+...++.+ .....++|++.||.++||-+...        ...|......|..++++++|+.|
T Consensus       441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d  520 (792)
T KOG1963|consen  441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD  520 (792)
T ss_pred             cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence            0000     0123544444444443 33238899999999999988432        12344444457889999999999


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          461 SPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       461 ~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      |. +| +.+.+++|.+||..+...+...++.+
T Consensus       521 Gs-ll-a~s~~~~Itiwd~~~~~~l~~~~~~~  550 (792)
T KOG1963|consen  521 GS-LL-AVSFDDTITIWDYDTKNELLCTEGSR  550 (792)
T ss_pred             Cc-EE-EEecCCEEEEecCCChhhhhcccccc
Confidence            97 45 46778899999998854443333333

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=9.8e-16  Score=138.66  Aligned_cols=230  Identities=17%  Similarity=0.226  Sum_probs=169.0

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ..+...|.+|+.+|. ++|+.+......                           ......-.|.-+-|+..   ++|..
T Consensus        14 Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~---------------------------~~~~~~~~IvEmLFSSS---LvaiV   62 (391)
T KOG2110|consen   14 NQDSTLLSVGSKDGY-KIFSCSPFEKCF---------------------------SKDTEGVSIVEMLFSSS---LVAIV   62 (391)
T ss_pred             ccceeEEEccCCCce-eEEecCchHHhh---------------------------cccCCCeEEEEeecccc---eeEEE
Confidence            678889999999885 477776432211                           01112234555566654   66666


Q ss_pred             ecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe---ecCCeEEEEe
Q 010769          286 SADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADVESLAW  360 (502)
Q Consensus       286 s~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~v~~  360 (502)
                      +.+.  .+++++++.+..+..+. ....|.++.++.+   .|+++-.+. |+|||++..+.......   +...+.++++
T Consensus        63 ~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~  137 (391)
T KOG2110|consen   63 SIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSP  137 (391)
T ss_pred             ecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc---eEEEEEccc-EEEEecccceeehhhhccCCCccceEeecc
Confidence            6654  49999999888888776 4678999999874   466555444 99999998776554332   3334555555


Q ss_pred             CCCCCCEEEE--EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc-EEEEECCCC
Q 010769          361 DPHAEHSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLWDLSNN  437 (502)
Q Consensus       361 ~p~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~-i~vwd~~~~  437 (502)
                      ++.+. +++.  +...|.|.+||+.+.         +++..+.+|.+++.+++|+++| .+|||+|..|+ ||||.+.++
T Consensus       138 n~~n~-ylAyp~s~t~GdV~l~d~~nl---------~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  138 NNANC-YLAYPGSTTSGDVVLFDTINL---------QPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CCCCc-eEEecCCCCCceEEEEEcccc---------eeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCc
Confidence            55433 3443  346789999999987         8889999999999999999999 99999999998 799999999


Q ss_pred             CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          438 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +....+.+......|.+++|+|++++ |++.|+.++|+||.+....
T Consensus       207 ~kl~eFRRG~~~~~IySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  207 QKLYEFRRGTYPVSIYSLSFSPDSQF-LAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             cEeeeeeCCceeeEEEEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence            85444444444556899999999995 8888899999999997654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=6.5e-17  Score=147.75  Aligned_cols=255  Identities=20%  Similarity=0.249  Sum_probs=174.1

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      .++||+|+.|..|+||.+........                  ..+-.....+..|..+|+++.|+|+ +.+||||+.+
T Consensus        26 ~~~laT~G~D~~iriW~v~r~~~~~~------------------~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~   86 (434)
T KOG1009|consen   26 LNKLATAGGDKDIRIWKVNRSEPGGG------------------DMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDG   86 (434)
T ss_pred             ccceecccCccceeeeeeeecCCCCC------------------ceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCC
Confidence            44999999999999999975433221                  0123344567789999999999999 5699999999


Q ss_pred             CcEEEEECC--------C--------CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769          289 KQVKIWDVA--------A--------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       289 g~v~vwd~~--------~--------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      |.|.+|-..        +        ....+.+.+|...|..++|+|++ .++++++.|..+++||++.+........|.
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~  165 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHE  165 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeeccccc
Confidence            999999765        2        23456678899999999999999 999999999999999999999988888999


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC-----------CCCCccEEEe---cCCCCeeEEEEcCCCCC
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-----------TSQQSSFTLH---AHDKAVCTISYNPLVPN  418 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~~~~~~~~~~---~h~~~v~~l~~sp~~~~  418 (502)
                      ..+.-++|.|.+. ++++-+.|...+.+.+.........           .......++.   .-..-...++|+|+| .
T Consensus       166 ~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG-~  243 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG-S  243 (434)
T ss_pred             cccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC-c
Confidence            9999999999765 6777777776666665443210000           0000111111   112335667899998 7


Q ss_pred             EEEEEeC----CCc-----EEEEECCCCCeeEEEEecCCCCCEEEEEEcCC-----------------CCcEEEEEeCCC
Q 010769          419 LLATGST----DKM-----VKLWDLSNNQPSCIASRNPKAGAVFSVAFSED-----------------SPFVLAIGGSKG  472 (502)
Q Consensus       419 ~l~t~s~----dg~-----i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd-----------------~~~llasg~~dg  472 (502)
                      +|++.+.    .+.     .++|+-...+ .....+.....+...+.|+|=                 .+.++|.++.+ 
T Consensus       244 llvtPag~~~~g~~~~~n~tYvfsrk~l~-rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-  321 (434)
T KOG1009|consen  244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLK-RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-  321 (434)
T ss_pred             EEEcccceeeeCCceeeceeEeecccccc-CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-
Confidence            8877543    222     3455433222 123334444444555555441                 12256666554 


Q ss_pred             cEEEEECCCCccccc
Q 010769          473 KLEIWDTLSDAGISN  487 (502)
Q Consensus       473 ~i~vwd~~~~~~~~~  487 (502)
                      .|+|||..+-.++..
T Consensus       322 svyvydtq~~~P~~~  336 (434)
T KOG1009|consen  322 SVYVYDTQTLEPLAV  336 (434)
T ss_pred             eEEEeccccccceEE
Confidence            799999988665543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=7.2e-18  Score=166.32  Aligned_cols=237  Identities=23%  Similarity=0.371  Sum_probs=181.0

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |...|.++++|+.|..++||..++..++.                           ...||.+.|+.++.+.+ ..++++
T Consensus       198 fDrtg~~Iitgsdd~lvKiwS~et~~~lA---------------------------s~rGhs~ditdlavs~~-n~~iaa  249 (1113)
T KOG0644|consen  198 FDRTGRYIITGSDDRLVKIWSMETARCLA---------------------------SCRGHSGDITDLAVSSN-NTMIAA  249 (1113)
T ss_pred             eccccceEeecCccceeeeeeccchhhhc---------------------------cCCCCccccchhccchh-hhhhhh
Confidence            36789999999999999999987654443                           44589999999999988 669999


Q ss_pred             EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-CCCcc---ceEeecC-------
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSG---FKWAVAA-------  353 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~---~~~~~~~-------  353 (502)
                      +|.|..|++|.+..+.++..+.+|++.|++++|+|-.     +.+.||++++||.+- .....   .......       
T Consensus       250 aS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~  324 (1113)
T KOG0644|consen  250 ASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF  324 (1113)
T ss_pred             cccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeec
Confidence            9999999999999999999999999999999999953     778899999999881 11000   0000001       


Q ss_pred             -------------------CeEEEEeCCC----------CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC
Q 010769          354 -------------------DVESLAWDPH----------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD  404 (502)
Q Consensus       354 -------------------~v~~v~~~p~----------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~  404 (502)
                                         ...+++|...          ...+.+++-.+-.+.+|++.++         .....+.+|.
T Consensus       325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghs  395 (1113)
T KOG0644|consen  325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHS  395 (1113)
T ss_pred             cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc---------hhhhhhcccc
Confidence                               1222223221          1122333334455677777776         6677788899


Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      ..+..+.++|.++....+++.||...|||+..+.+...+. .+| +.+....||++|.. ++....-|.++|.....++.
T Consensus       396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~gh-~kl~d~kFSqdgts-~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IGH-GKLVDGKFSQDGTS-IALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-ccc-ceeeccccCCCCce-EecCCCCCceEEeccCCCcc
Confidence            9999999999998899999999999999999998765555 444 66888899999985 77777778999998876665


Q ss_pred             cc
Q 010769          485 IS  486 (502)
Q Consensus       485 ~~  486 (502)
                      ..
T Consensus       473 ~k  474 (1113)
T KOG0644|consen  473 QK  474 (1113)
T ss_pred             cc
Confidence            43

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.2e-16  Score=143.52  Aligned_cols=204  Identities=18%  Similarity=0.173  Sum_probs=156.6

Q ss_pred             eeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE
Q 010769          270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  349 (502)
                      .+++|+.+ +..|++|+.||++|||+..+...+.....|...|.+|.|+|++ .+|++.+.| ..+||+++++.......
T Consensus       148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcC
Confidence            78999999 4599999999999999988888888888899999999999999 999999999 99999999985554333


Q ss_pred             e--ecCCeEEEEeCCCC---CCEEEE-EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE
Q 010769          350 A--VAADVESLAWDPHA---EHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       350 ~--~~~~v~~v~~~p~~---~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .  .......+.|+.++   ..++++ -..-+.|+.|++.......    .-+..+.......|++++.+++| ++++.|
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~----~l~~~~~~~~~~siSsl~VS~dG-kf~AlG  299 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN----FLRLRKKIKRFKSISSLAVSDDG-KFLALG  299 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc----ccchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence            2  22335667777654   222333 2345567777776553210    11233333344579999999998 999999


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +.||.|-|++..+.+. .......|.+.|+.+.|+|+.++ +++-+.+..+.|..+.-..
T Consensus       300 T~dGsVai~~~~~lq~-~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~vd~  357 (398)
T KOG0771|consen  300 TMDGSVAIYDAKSLQR-LQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAVDK  357 (398)
T ss_pred             ccCCcEEEEEeceeee-eEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEeecc
Confidence            9999999999988874 34456789999999999999997 7778888888888876543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.74  E-value=2.1e-15  Score=150.52  Aligned_cols=244  Identities=32%  Similarity=0.480  Sum_probs=187.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcc-cceeeEEe-cCCCCcEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAW-NKEFRNILA  283 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-~~~~~~~l~  283 (502)
                      .+.+..++.++.++.+.+|+.....                          .....+.++. ..+..+.+ ++++..+++
T Consensus        74 ~~~~~~~~~~~~d~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (466)
T COG2319          74 SPDGELLLSGSSDGTIKLWDLDNGE--------------------------KLIKSLEGLHDSSVSKLALSSPDGNSILL  127 (466)
T ss_pred             CCCCcEEEEecCCCcEEEEEcCCCc--------------------------eeEEEEeccCCCceeeEEEECCCcceEEe
Confidence            5778999999999999999987532                          0111112222 36777777 777443555


Q ss_pred             EEec-CCcEEEEECCC-CeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEeCCCCCCccceEeecCCeEEEEe
Q 010769          284 SASA-DKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWAVAADVESLAW  360 (502)
Q Consensus       284 sgs~-Dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~  360 (502)
                      ..+. |+.+.+|++.. ......+..|...|..++|+|++ ..+++++. ++.+++|++...........|...+.+++|
T Consensus       128 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  206 (466)
T COG2319         128 ASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF  206 (466)
T ss_pred             ccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence            5444 99999999998 78888889999999999999999 67888875 999999999986665555567889999999


Q ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE-EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       361 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      +|.+..++++++.++.|++||.+..         .... .+..|...+ ...|+|++ .++++++.|+.+++|++.....
T Consensus       207 ~~~~~~~~~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         207 SPDGGLLIASGSSDGTIRLWDLSTG---------KLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             cCCcceEEEEecCCCcEEEEECCCC---------cEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc
Confidence            9887634555589999999988844         4444 577787775 44899988 8888999999999999997764


Q ss_pred             eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                       .+.....|...|.++.|.|++.. +++++.++.+++|++.+........
T Consensus       276 -~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~  323 (466)
T COG2319         276 -LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLT  323 (466)
T ss_pred             -EEEEEecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEee
Confidence             23333677889999999998875 5558888899999998877655444

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=7.1e-16  Score=136.99  Aligned_cols=251  Identities=19%  Similarity=0.255  Sum_probs=184.5

Q ss_pred             cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccc
Q 010769          189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  268 (502)
Q Consensus       189 ~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  268 (502)
                      +....+|.+|       ++++..+|++.....|.||.....+.                        ....+.+..|...
T Consensus         9 ~~~pitchAw-------n~drt~iAv~~~~~evhiy~~~~~~~------------------------w~~~htls~Hd~~   57 (361)
T KOG1523|consen    9 LLEPITCHAW-------NSDRTQIAVSPNNHEVHIYSMLGADL------------------------WEPAHTLSEHDKI   57 (361)
T ss_pred             ccCceeeeee-------cCCCceEEeccCCceEEEEEecCCCC------------------------ceeceehhhhCcc
Confidence            3455578888       78999999999999999999865433                        3344456679999


Q ss_pred             eeeEEecCCCCcEEEEEecCCcEEEEECC-CC--eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-
Q 010769          269 VLGLAWNKEFRNILASASADKQVKIWDVA-AG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-  344 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~-~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-  344 (502)
                      |++|.|+|. .+.|++|+.|..-+||... .+  ++...+..++..++++.|+|.+ +.|++|+.-..|.||-+..... 
T Consensus        58 vtgvdWap~-snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdW  135 (361)
T KOG1523|consen   58 VTGVDWAPK-SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDW  135 (361)
T ss_pred             eeEEeecCC-CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccce
Confidence            999999999 6799999999999999983 33  4555666789999999999999 8999999999999998876543 


Q ss_pred             ---ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC---------CCCCccEEEecCCCCeeEEEE
Q 010769          345 ---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS---------TSQQSSFTLHAHDKAVCTISY  412 (502)
Q Consensus       345 ---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~~h~~~v~~l~~  412 (502)
                         ......+.+.|+++.|+|++ -++++|+.|+..++|..--......+         +-......+....+.|..+.|
T Consensus       136 WVsKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f  214 (361)
T KOG1523|consen  136 WVSKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF  214 (361)
T ss_pred             ehhhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence               22344667889999999975 48899999999999875322111100         001122233345688999999


Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769          413 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       413 sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vw  477 (502)
                      +|.| ..|+-.+.|+++.+-|....... +.......-+..++.|-.+..  ++++|.+..-.++
T Consensus       215 s~sG-~~lawv~Hds~v~~~da~~p~~~-v~~~~~~~lP~ls~~~ise~~--vv~ag~~c~P~lf  275 (361)
T KOG1523|consen  215 SPSG-NRLAWVGHDSTVSFVDAAGPSER-VQSVATAQLPLLSVSWISENS--VVAAGYDCGPVLF  275 (361)
T ss_pred             CCCC-CEeeEecCCCceEEeecCCCchh-ccchhhccCCceeeEeecCCc--eeecCCCCCceEE
Confidence            9998 89999999999999998776432 222222236788888876654  4555666433333

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=5.3e-15  Score=126.55  Aligned_cols=288  Identities=16%  Similarity=0.216  Sum_probs=180.4

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCC---CCcee--eeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG---DPNLY--VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~---~~~l~--~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~  214 (502)
                      ..|.+-+++|.+++|++|...+++..+.+-........   ...+.  .-|+.++    ..+.+         ...+|++
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpi----y~~~f---------~d~~Lls   77 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPI----YYLAF---------HDDFLLS   77 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCe----eeeee---------ehhheee
Confidence            35778899999999999999996544444433322211   11111  1233222    33333         2567777


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      |+ ||.|+=|..+........         +..+..     +.+...-....-.|+++...|. .+-++.++.|+.+.-|
T Consensus        78 ~g-dG~V~gw~W~E~~es~~~---------K~lwe~-----~~P~~~~~~evPeINam~ldP~-enSi~~AgGD~~~y~~  141 (325)
T KOG0649|consen   78 GG-DGLVYGWEWNEEEESLAT---------KRLWEV-----KIPMQVDAVEVPEINAMWLDPS-ENSILFAGGDGVIYQV  141 (325)
T ss_pred             cc-CceEEEeeehhhhhhccc---------hhhhhh-----cCccccCcccCCccceeEeccC-CCcEEEecCCeEEEEE
Confidence            76 499999987643221000         000000     0000010122346899999998 5566666789999999


Q ss_pred             ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe----------ecCCeEEEEeCCCC
Q 010769          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----------VAADVESLAWDPHA  364 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----------~~~~v~~v~~~p~~  364 (502)
                      |+++|+..+++++|++.|.++.-.... ..+++|+.||++++||+++++.......          ....|-+++-+.  
T Consensus       142 dlE~G~i~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--  218 (325)
T KOG0649|consen  142 DLEDGRIQREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--  218 (325)
T ss_pred             EecCCEEEEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--
Confidence            999999999999999999999885544 5799999999999999999887653321          223466666553  


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      . .+++| ....+.+|.+|..         .+...+. ...++..+.|-.   .++++++..+.|.-|.+..-   ....
T Consensus       219 d-WlvCG-gGp~lslwhLrss---------e~t~vfp-ipa~v~~v~F~~---d~vl~~G~g~~v~~~~l~Gv---l~a~  280 (325)
T KOG0649|consen  219 D-WLVCG-GGPKLSLWHLRSS---------ESTCVFP-IPARVHLVDFVD---DCVLIGGEGNHVQSYTLNGV---LQAN  280 (325)
T ss_pred             c-eEEec-CCCceeEEeccCC---------CceEEEe-cccceeEeeeec---ceEEEeccccceeeeeeccE---EEEe
Confidence            2 45544 4667999999986         3333333 334566677774   67888888888999987542   1222


Q ss_pred             ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vw  477 (502)
                      .+......++..|+..--.+|..+|....+.|+
T Consensus       281 ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  281 IPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ccCCccceeeecccCCceEEEEecccceeeeee
Confidence            222233455666654332346667777777765

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1e-15  Score=155.01  Aligned_cols=247  Identities=18%  Similarity=0.215  Sum_probs=174.5

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec-CCCCcEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILA  283 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~  283 (502)
                      |+|=...++++...-.|+|||...+..+..+-                        .-..-...|+.|.+- .+...+|+
T Consensus      1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~------------------------n~~~~~t~Vs~l~liNe~D~aLlL 1127 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFD------------------------NGAFPDTRVSDLELINEQDDALLL 1127 (1387)
T ss_pred             ecCCCceeEEcCCcceEEEEecccCceecccc------------------------CCCCCCCccceeeeecccchhhee
Confidence            35557788888877899999997654432211                        000233568888874 34466899


Q ss_pred             EEecCCcEEEEECC-----CCeeeEEecc-------CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce-Ee
Q 010769          284 SASADKQVKIWDVA-----AGKCNLTLEH-------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WA  350 (502)
Q Consensus       284 sgs~Dg~v~vwd~~-----~~~~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~  350 (502)
                      +|+.||.|+||+--     +.+.+..+.+       ..+.-.-+.|.... .+|++++.-..|+|||........-. ..
T Consensus      1128 tas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1128 TASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred             eeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecccC
Confidence            99999999999742     2233333321       11222446788777 45555666889999999876554321 23


Q ss_pred             ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCC--eeEEEEcCCCCCEEEEEeCCCc
Q 010769          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      ....++++.-+....+.+++|..||.|++||.|....      ...+.....|+..  |..+.+.+.|-..|++|+.+|.
T Consensus      1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred             CCccceeecccccCCceEEEeecCCceEEeecccCCc------cccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence            4455777776665667999999999999999998742      2356677788877  9999999988667999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCC--C-CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          429 VKLWDLSNNQPSCIASRNPKA--G-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~--~-~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      |++||++........+...|.  | .++++..++..+ ++|+|+. +.|+||++.....
T Consensus      1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred             EEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhh
Confidence            999999985322333333332  3 599999999999 7998888 8999999976554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.3e-16  Score=148.98  Aligned_cols=307  Identities=14%  Similarity=0.166  Sum_probs=217.0

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|.+-|+.+.|+..|..|++|+.+.   .+-+|.|........-...|...+     +...|+++     .+..-++++
T Consensus       139 ~~H~GcVntV~FN~~Gd~l~SgSDD~---~vv~WdW~~~~~~l~f~SGH~~Nv-----fQaKFiP~-----s~d~ti~~~  205 (559)
T KOG1334|consen  139 NKHKGCVNTVHFNQRGDVLASGSDDL---QVVVWDWVSGSPKLSFESGHCNNV-----FQAKFIPF-----SGDRTIVTS  205 (559)
T ss_pred             cCCCCccceeeecccCceeeccCccc---eEEeehhhccCcccccccccccch-----hhhhccCC-----CCCcCceec
Confidence            56899999999999999999999775   567777766554111112333333     33344433     346678999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.||.+++=.+.....+.                        ....+..|.++|.-++.-|...+.|.|++.|+.|.-.|
T Consensus       206 s~dgqvr~s~i~~t~~~e------------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~D  261 (559)
T KOG1334|consen  206 SRDGQVRVSEILETGYVE------------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHID  261 (559)
T ss_pred             cccCceeeeeecccccee------------------------cceecccccCccceeeecCCCCCcccccccccceeeee
Confidence            999999998775322221                        22344579999999999999889999999999999999


Q ss_pred             CCCCeeeEEe---ccCCC---CeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc------ceE------eecCCeEE
Q 010769          296 VAAGKCNLTL---EHHTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------FKW------AVAADVES  357 (502)
Q Consensus       296 ~~~~~~~~~~---~~h~~---~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~------~~~~~v~~  357 (502)
                      ++++.+...+   ..+..   ...+++.+|...+.+++|+.|..+++||.|.-....      .+.      ...-.|++
T Consensus       262 lr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITg  341 (559)
T KOG1334|consen  262 LRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITG  341 (559)
T ss_pred             eccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCccccee
Confidence            9987654444   22333   567899999998899999999999999988543221      011      22346999


Q ss_pred             EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCC-CCCC--CCccEE-EecCCC--CeeEEEEc-CCCCCEEEEEeCCCcEE
Q 010769          358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP-DSTS--QQSSFT-LHAHDK--AVCTISYN-PLVPNLLATGSTDKMVK  430 (502)
Q Consensus       358 v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~--~~~~~~-~~~h~~--~v~~l~~s-p~~~~~l~t~s~dg~i~  430 (502)
                      ++|+.++. -++++..|-.|++|.-..+.... .+..  ...+.. +.+|..  .|-++-|- |.. .++++||.-|.|.
T Consensus       342 l~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIF  419 (559)
T KOG1334|consen  342 LVYSHDGS-ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIF  419 (559)
T ss_pred             EEecCCcc-ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEE
Confidence            99997665 57778888899999544332210 0000  011222 566753  46666554 544 8999999999999


Q ss_pred             EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      ||+-.+++.+...  .+...-|+|+.-+|--+ +||++|-|..|+||-..+.+.
T Consensus       420 iW~K~t~eii~~M--egDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  420 IWDKKTGEIIRFM--EGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             EEecchhHHHHHh--hcccceEeccCCCCCCc-hhhccCCccceeeecCCcccc
Confidence            9999998844433  34344899999999999 799999999999999865543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.71  E-value=2.2e-17  Score=153.09  Aligned_cols=226  Identities=16%  Similarity=0.238  Sum_probs=182.0

Q ss_pred             CCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769          204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      .++.+|.+|+.|+..|.|..+|..+......+                            .-...|.++.|..+ .+++|
T Consensus       136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei----------------------------~v~Etv~Dv~~LHn-eq~~A  186 (545)
T KOG1272|consen  136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI----------------------------NVMETVRDVTFLHN-EQFFA  186 (545)
T ss_pred             eecCCccEEEecCCccceeeeecccceeeeee----------------------------ehhhhhhhhhhhcc-hHHHH
Confidence            33789999999999999999998754332211                            23467889999877 55666


Q ss_pred             EEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769          284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       284 sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  363 (502)
                      .+ ....+.||| ..|..++.++.| ..|..+.|-|.. .+|++++..|.++--|+.+++.+..+....+.+..++-+|.
T Consensus       187 VA-QK~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~  262 (545)
T KOG1272|consen  187 VA-QKKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY  262 (545)
T ss_pred             hh-hhceEEEec-CCCcEEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc
Confidence            55 557899999 668888888754 568999999998 88999999999999999999988877777788899999997


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      +. ++-+|..+|+|.+|.....         .++..+..|.++|++|++.+.| ++++|.+.|..|+|||+++...  +.
T Consensus       263 Na-Vih~GhsnGtVSlWSP~sk---------ePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~q--l~  329 (545)
T KOG1272|consen  263 NA-VIHLGHSNGTVSLWSPNSK---------EPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQ--LH  329 (545)
T ss_pred             cc-eEEEcCCCceEEecCCCCc---------chHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeeccccc--cc
Confidence            65 7889999999999998875         7888889999999999999998 9999999999999999998762  32


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      +... .-+...++||..|  +||++ ....|.||.=
T Consensus       330 t~~t-p~~a~~ls~Sqkg--lLA~~-~G~~v~iw~d  361 (545)
T KOG1272|consen  330 TYRT-PHPASNLSLSQKG--LLALS-YGDHVQIWKD  361 (545)
T ss_pred             eeec-CCCcccccccccc--ceeee-cCCeeeeehh
Confidence            3222 2356778898887  46654 4457999963

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.71  E-value=2.9e-15  Score=133.46  Aligned_cols=291  Identities=15%  Similarity=0.250  Sum_probs=183.1

Q ss_pred             ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCE-EEEecCCCcEEE
Q 010769          145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF-MAVGSMEPAIEI  223 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~-la~g~~dg~I~i  223 (502)
                      ..|+|+|++||+++..    ++-|...  .     .+..||-...-....-++|       ..+.-+ |.+...++.|.+
T Consensus        14 c~fSp~g~yiAs~~~y----rlviRd~--~-----tlq~~qlf~cldki~yieW-------~ads~~ilC~~yk~~~vqv   75 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY----RLVIRDS--E-----TLQLHQLFLCLDKIVYIEW-------KADSCHILCVAYKDPKVQV   75 (447)
T ss_pred             eeECCCCCeeeeeeee----EEEEecc--c-----hhhHHHHHHHHHHhhheee-------eccceeeeeeeeccceEEE
Confidence            5799999999999744    2333332  2     4444543221111234566       445544 455677889999


Q ss_pred             eeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeE
Q 010769          224 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  303 (502)
Q Consensus       224 wdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~  303 (502)
                      |++...+                           -..........+.+++|+|+|+++|.+...+-.|.||.+.+.+...
T Consensus        76 wsl~Qpe---------------------------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   76 WSLVQPE---------------------------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             EEeecce---------------------------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            9996421                           1112234567899999999999999999999999999999877644


Q ss_pred             EeccCCCCeEEEEEcCCCCcEEEEEECC------------------------------------CcEEEEeCCCCCCccc
Q 010769          304 TLEHHTDKVQAVAWNHHSPQILLSGSFD------------------------------------RSVVMKDARISTHSGF  347 (502)
Q Consensus       304 ~~~~h~~~v~~l~~~~~~~~~l~s~~~d------------------------------------g~i~vwd~~~~~~~~~  347 (502)
                       ++.....+..++|+|+| ++.+..+.-                                    ..+.+||.--.-.+ .
T Consensus       129 -~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv-~  205 (447)
T KOG4497|consen  129 -LPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV-Y  205 (447)
T ss_pred             -ecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee-e
Confidence             33344566888999998 666655431                                    12333332111110 1


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCC------------------------------------CCCC
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS------------------------------------DPDS  391 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------------------------------------~~~~  391 (502)
                      .....-.+..+.|+|.+. ++++|+.|+.+++.+--+.+.                                    ....
T Consensus       206 aYe~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~  284 (447)
T KOG4497|consen  206 AYERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL  284 (447)
T ss_pred             eeeeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc
Confidence            223345688899999755 899999999988765433221                                    0000


Q ss_pred             ---------------------CCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCC
Q 010769          392 ---------------------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPK  448 (502)
Q Consensus       392 ---------------------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~  448 (502)
                                           ...++...+......+.-++|+++. .+++|-..  -+.+-+||++..+.   ...--.
T Consensus       285 ~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l---~avLiQ  360 (447)
T KOG4497|consen  285 EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL---HAVLIQ  360 (447)
T ss_pred             ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhh---hhhhhh
Confidence                                 0000011111123457778999987 77777543  35699999998773   222234


Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       449 ~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ..+|....|+|..+. |+.+.....+++|-......+....
T Consensus       361 k~piraf~WdP~~pr-L~vctg~srLY~W~psg~~~V~vP~  400 (447)
T KOG4497|consen  361 KHPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGPRVVGVPK  400 (447)
T ss_pred             ccceeEEEeCCCCce-EEEEcCCceEEEEcCCCceEEecCC
Confidence            467999999999985 5555666689999987765554433

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.70  E-value=2.3e-17  Score=162.77  Aligned_cols=225  Identities=17%  Similarity=0.287  Sum_probs=172.7

Q ss_pred             ccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 010769          257 SIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM  336 (502)
Q Consensus       257 ~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  336 (502)
                      +....+.+|..+|.|+.|... +.++++|+.|..|+||.+.++.++.+..+|.+.|+.++.+..+ .++++++.|..|++
T Consensus       181 k~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEE
Confidence            344566799999999999999 5699999999999999999999999999999999999999887 88999999999999


Q ss_pred             EeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC-----CCCCccEEEe----------
Q 010769          337 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-----TSQQSSFTLH----------  401 (502)
Q Consensus       337 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~----------  401 (502)
                      |.++.+..+..+.+|.+.|++++|+|.     .+++.||++++||.+-......+     .....+..+.          
T Consensus       259 Wrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  259 WRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             EecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence            999999999999999999999999994     37788999999999822111000     0000000000          


Q ss_pred             ------cCCCCeeEEEEcCC----------CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEE
Q 010769          402 ------AHDKAVCTISYNPL----------VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL  465 (502)
Q Consensus       402 ------~h~~~v~~l~~sp~----------~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll  465 (502)
                            +.....-+++|...          ...+.+++-.+..+++|++.++.  ......+|...+..+.++|-.+.+.
T Consensus       334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~--l~H~l~ghsd~~yvLd~Hpfn~ri~  411 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ--LLHNLMGHSDEVYVLDVHPFNPRIA  411 (1113)
T ss_pred             ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch--hhhhhcccccceeeeeecCCCcHhh
Confidence                  00001111222221          11334444455668889988887  4666778889999999999988778


Q ss_pred             EEEeCCCcEEEEECCCCcccccccc
Q 010769          466 AIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       466 asg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      .++|.||...|||+-.+..++..+.
T Consensus       412 msag~dgst~iwdi~eg~pik~y~~  436 (1113)
T KOG0644|consen  412 MSAGYDGSTIIWDIWEGIPIKHYFI  436 (1113)
T ss_pred             hhccCCCceEeeecccCCcceeeec
Confidence            8999999999999999998877763

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.70  E-value=5.5e-16  Score=149.63  Aligned_cols=230  Identities=19%  Similarity=0.303  Sum_probs=166.1

Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      ++|-|+|..|+.+.. ..+.|||.+.+..++                           .+++|.+.|.|++|+.+ +..+
T Consensus        18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llq---------------------------tLKgHKDtVycVAys~d-GkrF   68 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ---------------------------PLKGHKDTVYCVAYAKD-GKRF   68 (1081)
T ss_pred             eEECCCCceEEEecC-CEEEEEeCCCccccc---------------------------ccccccceEEEEEEccC-Ccee
Confidence            344789888877754 578899998755544                           45689999999999999 5699


Q ss_pred             EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769          283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p  362 (502)
                      |||+.|..|.+|...-.- +..+ .|++.|+|+.|+|-. +.|++++.+ -.-+|........  .......+.+++|..
T Consensus        69 ASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~--K~kss~R~~~CsWtn  142 (1081)
T KOG1538|consen   69 ASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVS--KHKSSSRIICCSWTN  142 (1081)
T ss_pred             ccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHH--hhhhheeEEEeeecC
Confidence            999999999999854322 2233 499999999999998 788888754 3567766543322  344556789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC----CEEEEEeCCCcEEEEECCCCC
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP----NLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~----~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      +|. +++.|..+|+|.+-+.....       ...+....+...+|.+++|+|..+    ..+++.....++.+|.+....
T Consensus       143 DGq-ylalG~~nGTIsiRNk~gEe-------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~  214 (1081)
T KOG1538|consen  143 DGQ-YLALGMFNGTISIRNKNGEE-------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ  214 (1081)
T ss_pred             CCc-EEEEeccCceEEeecCCCCc-------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee
Confidence            876 89999999999987543321       122233345678999999999642    467777778888888776432


Q ss_pred             eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          439 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       439 ~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                         +-.-..-.-...|+++.++|.| +..||.++.+++|--
T Consensus       215 ---Igk~r~L~FdP~CisYf~NGEy-~LiGGsdk~L~~fTR  251 (1081)
T KOG1538|consen  215 ---IGKDRALNFDPCCISYFTNGEY-ILLGGSDKQLSLFTR  251 (1081)
T ss_pred             ---ecccccCCCCchhheeccCCcE-EEEccCCCceEEEee
Confidence               2211112223568999999998 566888999988853

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=5.2e-15  Score=133.50  Aligned_cols=242  Identities=17%  Similarity=0.196  Sum_probs=162.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++.-..+|+++.|-.|+||+-.. .+..                          .........|+||+|-|.+...|+.|
T Consensus       107 hqH~~~fava~nddvVriy~kss-t~pt--------------------------~Lks~sQrnvtclawRPlsaselavg  159 (445)
T KOG2139|consen  107 HQHIIAFAVATNDDVVRIYDKSS-TCPT--------------------------KLKSVSQRNVTCLAWRPLSASELAVG  159 (445)
T ss_pred             chhhhhhhhhccCcEEEEeccCC-CCCc--------------------------eecchhhcceeEEEeccCCcceeeee
Confidence            55566688999999999998653 1110                          01112346799999999988889888


Q ss_pred             ecCCcEEEEECCCC----ee----------eEEeccCCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEeCCCCCCccceEe
Q 010769          286 SADKQVKIWDVAAG----KC----------NLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       286 s~Dg~v~vwd~~~~----~~----------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~  350 (502)
                      +.. -|++|.....    +.          +....+| .+|++++|+++| ..+++++. +..|.|||..++......+.
T Consensus       160 Cr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~  236 (445)
T KOG2139|consen  160 CRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPK  236 (445)
T ss_pred             ecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccccc
Confidence            885 4999986421    11          1122344 689999999999 66666654 67899999999988776667


Q ss_pred             ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      ..+.+.-+.|+|++. .|++++-|+..++|.....        ... .......+.|...+|+|.|..+|++++..-.++
T Consensus       237 glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~--------wt~-erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly  306 (445)
T KOG2139|consen  237 GLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQS--------WTK-ERWILGSGRVQTACWSPCGSFLLFACSGSPRLY  306 (445)
T ss_pred             CCCceeeEEEcCCCC-EEEEecccceeeeehhccc--------cee-cceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence            778899999999987 7888888999999965443        111 122223458999999999977777777655444


Q ss_pred             EEECCCCCe-----------eEEEEe-----c----CCCCCEEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCC
Q 010769          431 LWDLSNNQP-----------SCIASR-----N----PKAGAVFSVAFSEDSPFVLAIGGSK--------GKLEIWDTLSD  482 (502)
Q Consensus       431 vwd~~~~~~-----------~~~~~~-----~----~~~~~v~~~~~spd~~~llasg~~d--------g~i~vwd~~~~  482 (502)
                      -..+....+           ..+..+     .    .-.+.+.+++|.|.|.| ||+.-..        +.|.+||.+..
T Consensus       307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-Lav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-LAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-EEEEEcCCchhhhhhhhhhhhccccc
Confidence            332222110           011111     1    12467889999999997 5554332        23667887765


Q ss_pred             cccccc
Q 010769          483 AGISNR  488 (502)
Q Consensus       483 ~~~~~~  488 (502)
                      ..+.-.
T Consensus       386 p~vels  391 (445)
T KOG2139|consen  386 PPVELS  391 (445)
T ss_pred             CceEEE
Confidence            554433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=5.5e-14  Score=126.96  Aligned_cols=306  Identities=17%  Similarity=0.209  Sum_probs=189.8

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      -.+.-++|+|.-.-++++..++     .|.+|+........|..-    ...-..|++|-+.      .+.-|++|+. +
T Consensus        99 ~dlr~~aWhqH~~~fava~ndd-----vVriy~ksst~pt~Lks~----sQrnvtclawRPl------saselavgCr-~  162 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDD-----VVRIYDKSSTCPTKLKSV----SQRNVTCLAWRPL------SASELAVGCR-A  162 (445)
T ss_pred             cceeeEeechhhhhhhhhccCc-----EEEEeccCCCCCceecch----hhcceeEEEeccC------Ccceeeeeec-c
Confidence            3567789999888888888887     666666655322222211    2233479999633      4668888887 4


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec-CCcEEEEECCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKIWDVAA  298 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~-Dg~v~vwd~~~  298 (502)
                      -|.||..+..-....... +.            ...........+| ..|++|+|++++ ..|++++. |..|.|||..+
T Consensus       163 gIciW~~s~tln~~r~~~-~~------------s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdt  227 (445)
T KOG2139|consen  163 GICIWSDSRTLNANRNIR-MM------------STHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDT  227 (445)
T ss_pred             eeEEEEcCcccccccccc-cc------------cccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCC
Confidence            578999864322211000 00            0111222334466 889999999995 57777765 67899999999


Q ss_pred             CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEE
Q 010769          299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  378 (502)
                      +.++......-+.++-+.|+|++ .+|++++.|+..++|..........-....+.|...+|+|.|..++++++..-.|+
T Consensus       228 g~~~pL~~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly  306 (445)
T KOG2139|consen  228 GQKIPLIPKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLY  306 (445)
T ss_pred             CCcccccccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence            98776654456789999999999 88999999999999966543322222234558999999999998888877666555


Q ss_pred             EEECCCCCCCCC-CCCC---CccEEE-----ec----CCCCeeEEEEcCCCCCEEEEEeCCC--------cEEEEECCCC
Q 010769          379 GFDIRTAKSDPD-STSQ---QSSFTL-----HA----HDKAVCTISYNPLVPNLLATGSTDK--------MVKLWDLSNN  437 (502)
Q Consensus       379 i~d~~~~~~~~~-~~~~---~~~~~~-----~~----h~~~v~~l~~sp~~~~~l~t~s~dg--------~i~vwd~~~~  437 (502)
                      -........... +...   .++..+     .+    ..+++.+++|.|.| .+||+.-..+        .|.+||.+..
T Consensus       307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhccccc
Confidence            443332211110 0000   001111     11    14678999999999 7777755433        3677887765


Q ss_pred             CeeEEEE--ecCCCCCEEEEEEcC---CCCcEEEEEeCCCcEEEEECC
Q 010769          438 QPSCIAS--RNPKAGAVFSVAFSE---DSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       438 ~~~~~~~--~~~~~~~v~~~~~sp---d~~~llasg~~dg~i~vwd~~  480 (502)
                      .+.....  ..... ...-++|+|   +++ +|..+=+.|.+.-|.+.
T Consensus       386 p~vels~cg~i~ge-~P~~IsF~pl~n~g~-lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  386 PPVELSYCGMIGGE-YPAYISFGPLKNEGR-LLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             CceEEEecccccCC-CCceEEeeecccCCc-EEEEEeccCceEeeeeE
Confidence            4322221  11111 123345544   456 67777788888888763

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=2.8e-14  Score=126.93  Aligned_cols=180  Identities=19%  Similarity=0.340  Sum_probs=136.6

Q ss_pred             CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-CCCccceEee--cCCeEEEEeCCCCC
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKWAV--AADVESLAWDPHAE  365 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~--~~~v~~v~~~p~~~  365 (502)
                      ..|.|||=...+++.++. ...+|.++.+.++-   +++. ..+.|.||.... .+........  +..+.+  ..|...
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~--~~~~~~  147 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCS--LCPTSN  147 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEe--ecCCCC
Confidence            479999977778888886 57899999998853   4444 467899999873 3333222221  223333  344333


Q ss_pred             CEEEE--EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc-EEEEECCCCCeeEE
Q 010769          366 HSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLWDLSNNQPSCI  442 (502)
Q Consensus       366 ~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~-i~vwd~~~~~~~~~  442 (502)
                      ..+++  |..-|.|++-|+.....       .+...+.+|.+.|.|++++.+| .++||+|..|+ |||||..++.+...
T Consensus       148 k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E  219 (346)
T KOG2111|consen  148 KSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQE  219 (346)
T ss_pred             ceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeee
Confidence            33333  56779999999987631       2467889999999999999998 99999999998 89999999997666


Q ss_pred             EEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      .........|.+++|||+..+ ||+++..|+|+|+.++....
T Consensus       220 ~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  220 LRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHIFSLRDTEN  260 (346)
T ss_pred             eecCCchheEEEEEeCCCccE-EEEEcCCCeEEEEEeecCCC
Confidence            666666778999999999995 99999999999999987553

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.69  E-value=3.4e-15  Score=141.13  Aligned_cols=232  Identities=13%  Similarity=0.143  Sum_probs=159.9

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA  220 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~  220 (502)
                      .+....++-.|..|+..-.+.    |-+|.|.........+  ....-...-|.|-.+....  -.+.+--|++|-.-|.
T Consensus       125 ~~~~~~~~~~gd~lcFnvg~~----lyv~~~~g~~~~~~pi--~k~~y~gt~P~cHdfn~~~--a~~~g~dllIGf~tGq  196 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVGRE----LYVYSYRGAADLSKPI--DKREYKGTSPTCHDFNSFT--ATPKGLDLLIGFTTGQ  196 (636)
T ss_pred             ceeeccccCCCCEEEEecCCe----EEEEEccCcchhccch--hhhcccCCCCceecccccc--cCCCCcceEEeeccCc
Confidence            345566666677776665442    4555555323211111  1111112234555443221  1466778888888899


Q ss_pred             EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC-
Q 010769          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-  299 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~-  299 (502)
                      |.+.+...    .+..                   +.......-....|+|+.|-|....+++.+-.+|.+.+||.... 
T Consensus       197 vq~idp~~----~~~s-------------------klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~  253 (636)
T KOG2394|consen  197 VQLIDPIN----FEVS-------------------KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC  253 (636)
T ss_pred             eEEecchh----hHHH-------------------HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc
Confidence            98887642    1000                   00000011234789999999988889999999999999975310 


Q ss_pred             ---------------------------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769          300 ---------------------------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       300 ---------------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                                                 .++..+....+.|...+|+|+| .+|++.+.||.++|||..+..........-
T Consensus       254 ~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF  332 (636)
T KOG2394|consen  254 GATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYF  332 (636)
T ss_pred             cCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhc
Confidence                                       1111122234578899999998 999999999999999999887776666677


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      +...||+|+|++. ++++|++|..|.+|.+...         +.+..-++|.++|+.++|.|
T Consensus       333 GGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~er---------RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  333 GGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEER---------RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cceEEEEEcCCcc-EEEecCCcceEEEEEeccc---------eEEEeccccccceeeEeecc
Confidence            8899999999987 8999999999999999876         78888899999999999997

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=5.9e-16  Score=146.42  Aligned_cols=221  Identities=19%  Similarity=0.296  Sum_probs=162.0

Q ss_pred             ceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccc
Q 010769          180 NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIK  259 (502)
Q Consensus       180 ~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  259 (502)
                      .|.+|...+     .|++|       +.+|.+||+|+.|-.+.|||.-..                          +...
T Consensus        45 eL~GH~GCV-----N~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~--------------------------Kllh   86 (758)
T KOG1310|consen   45 ELTGHTGCV-----NCLEW-------NADGELLASGSDDTRLIVWDPFEY--------------------------KLLH   86 (758)
T ss_pred             hhcccccee-----cceee-------cCCCCEEeecCCcceEEeecchhc--------------------------ceee
Confidence            566666555     68999       789999999999999999998521                          2223


Q ss_pred             cccCCcccceeeEEecCCC-CcEEEEEecCCcEEEEECCCC----------eeeEEeccCCCCeEEEEEcCCCCcEEEEE
Q 010769          260 YKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSG  328 (502)
Q Consensus       260 ~~~~~h~~~V~~l~~~~~~-~~~l~sgs~Dg~v~vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  328 (502)
                      ..-.+|...|.++.|-|.. ..+++||+.|..|+|+|+...          ...+.+..|...|..|+..|.+++.+.++
T Consensus        87 sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa  166 (758)
T KOG1310|consen   87 SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA  166 (758)
T ss_pred             eeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe
Confidence            3445899999999999863 348899999999999999842          34455677999999999999999999999


Q ss_pred             ECCCcEEEEeCCCCCCccceE----------eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC------CC
Q 010769          329 SFDRSVVMKDARISTHSGFKW----------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD------ST  392 (502)
Q Consensus       329 ~~dg~i~vwd~~~~~~~~~~~----------~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~  392 (502)
                      +.||+|+-+|+|.+.......          ..--...|+..+|..+++|++|+.+-..++||.|.......      ..
T Consensus       167 sEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~  246 (758)
T KOG1310|consen  167 SEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTC  246 (758)
T ss_pred             cCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCC
Confidence            999999999999754322111          11134678999999999999999999999999654322110      00


Q ss_pred             ---CCCccEEE-ecCC-----------CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          393 ---SQQSSFTL-HAHD-----------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       393 ---~~~~~~~~-~~h~-----------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                         .-.++..+ .+|-           ..++-+.|+|+|..+|++-+.+ .|+++|+...+.
T Consensus       247 pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~  307 (758)
T KOG1310|consen  247 PPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKS  307 (758)
T ss_pred             CCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCC
Confidence               00112222 2222           1256688999996777766654 699999998774

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=2.2e-16  Score=146.54  Aligned_cols=279  Identities=18%  Similarity=0.156  Sum_probs=204.5

Q ss_pred             ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010769          143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE  222 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~  222 (502)
                      ..+.+..+|+.|+.|+..|   +|-...|....     |  |..+.+-.-...+.|+       .+.+|+|++- ...+.
T Consensus       133 Y~~~ytrnGrhlllgGrKG---HlAa~Dw~t~~-----L--~~Ei~v~Etv~Dv~~L-------Hneq~~AVAQ-K~y~y  194 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKG---HLAAFDWVTKK-----L--HFEINVMETVRDVTFL-------HNEQFFAVAQ-KKYVY  194 (545)
T ss_pred             eeeeecCCccEEEecCCcc---ceeeeecccce-----e--eeeeehhhhhhhhhhh-------cchHHHHhhh-hceEE
Confidence            5577889999999998887   45555554332     2  2222233333445554       5688888885 57899


Q ss_pred             EeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeee
Q 010769          223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  302 (502)
Q Consensus       223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~  302 (502)
                      |||-..                            ...+.+..| ..|..|.|.|. -.+|++++..|.++.-|+.+|+.+
T Consensus       195 vYD~~G----------------------------tElHClk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklV  244 (545)
T KOG1272|consen  195 VYDNNG----------------------------TELHCLKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLV  244 (545)
T ss_pred             EecCCC----------------------------cEEeehhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhh
Confidence            998642                            222233333 67899999998 568999999999999999999999


Q ss_pred             EEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEEC
Q 010769          303 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  382 (502)
Q Consensus       303 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~  382 (502)
                      ..+..-.+.+..++-+|-+ .++-+|..+|+|.+|...+.........|.++|.++++.+.|. ++++++.|..++|||+
T Consensus       245 a~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDl  322 (545)
T KOG1272|consen  245 ASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDL  322 (545)
T ss_pred             HHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeee
Confidence            9998888999999999998 7899999999999999999988888889999999999999765 8999999999999999


Q ss_pred             CCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE-CCCCCeeEEEEe--cCCCCCEEEEEEcC
Q 010769          383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD-LSNNQPSCIASR--NPKAGAVFSVAFSE  459 (502)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd-~~~~~~~~~~~~--~~~~~~v~~~~~sp  459 (502)
                      |+.         ..+.+... ..+...+++|..|   +++++....|.||. .-.+.+.+...+  ....++|..+.|+|
T Consensus       323 R~~---------~ql~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP  389 (545)
T KOG1272|consen  323 RNF---------YQLHTYRT-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP  389 (545)
T ss_pred             ccc---------cccceeec-CCCcccccccccc---ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence            987         33444443 4567788888744   44455556799994 222111111111  12245899999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          460 DSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       460 d~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      -.. +|..|-..|.-.|.=..+|++.
T Consensus       390 ~ED-vLGIGH~~G~tsilVPGsGePN  414 (545)
T KOG1272|consen  390 YED-VLGIGHAGGITSILVPGSGEPN  414 (545)
T ss_pred             HHH-eeeccccCCceeEeccCCCCCC
Confidence            876 6877777776555555555544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.68  E-value=2.9e-15  Score=133.18  Aligned_cols=209  Identities=20%  Similarity=0.290  Sum_probs=166.4

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  341 (502)
                      -..+|+|.+|+++ +..+|.+.....|.||.....   +..++++.|...|++++|+|.. +.|++++.|...++|....
T Consensus         9 ~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC
Confidence            3478999999999 779999999999999988655   4788899999999999999999 8899999999999999854


Q ss_pred             CC---CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769          342 ST---HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       342 ~~---~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      +.   ....+..+...+++|.|+|.. +.|++|+....|.+|-+.....-.     .....-..+.+.|+++.|+|++ -
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWW-----VsKhikkPirStv~sldWhpnn-V  159 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWW-----VSKHIKKPIRSTVTSLDWHPNN-V  159 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEeccccee-----hhhhhCCccccceeeeeccCCc-c
Confidence            32   344566889999999999975 589999999999999887542111     1111234467789999999987 8


Q ss_pred             EEEEEeCCCcEEEEECCCC----C----------e--eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          419 LLATGSTDKMVKLWDLSNN----Q----------P--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~----~----------~--~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      +|++|+.|+.++||..--.    +          |  .++.......+.|..+.|+|+|. .|+-.+.|+.+.+=|....
T Consensus       160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCCC
Confidence            9999999999999974210    0          0  12333335568899999999999 6888999999999998766


Q ss_pred             c
Q 010769          483 A  483 (502)
Q Consensus       483 ~  483 (502)
                      .
T Consensus       239 ~  239 (361)
T KOG1523|consen  239 S  239 (361)
T ss_pred             c
Confidence            5

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.67  E-value=7.6e-14  Score=135.39  Aligned_cols=249  Identities=10%  Similarity=0.104  Sum_probs=150.7

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC-C
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-E  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~-d  218 (502)
                      .....+.++|++++|+++....  ..+.+|.++. .+   .+........+..|..+.+       +|++++|++++. +
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~--~~i~~~~~~~-~g---~l~~~~~~~~~~~p~~i~~-------~~~g~~l~v~~~~~  101 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPE--FRVLSYRIAD-DG---ALTFAAESPLPGSPTHIST-------DHQGRFLFSASYNA  101 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCC--CcEEEEEECC-CC---ceEEeeeecCCCCceEEEE-------CCCCCEEEEEEcCC
Confidence            4567789999999998876533  3455566642 22   2322222223333444433       899998888764 7


Q ss_pred             CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~  298 (502)
                      +.|.+|+++.......                       ..... .+.....+++++|+++.++++...++.|.+||+.+
T Consensus       102 ~~v~v~~~~~~g~~~~-----------------------~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028        102 NCVSVSPLDKDGIPVA-----------------------PIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CeEEEEEECCCCCCCC-----------------------ceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            8999999863211110                       00001 12234677889999665556777789999999976


Q ss_pred             CeeeE-------EeccCCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEeCCCC--CCcc--ceEee------cCCeEEEEe
Q 010769          299 GKCNL-------TLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARIS--THSG--FKWAV------AADVESLAW  360 (502)
Q Consensus       299 ~~~~~-------~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~--~~~~--~~~~~------~~~v~~v~~  360 (502)
                      ...+.       .+. .......+.|+|++ ++++++.. ++.|.+|++...  ....  .....      ......+.+
T Consensus       158 ~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~  235 (330)
T PRK11028        158 DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI  235 (330)
T ss_pred             CCcccccCCCceecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence            33221       111 12346789999999 66655554 999999999742  2111  01111      112335889


Q ss_pred             CCCCCCEEEEE-eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECC
Q 010769          361 DPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLS  435 (502)
Q Consensus       361 ~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~  435 (502)
                      +|++. +++++ ..++.|.+|++......     ...+..... ......++++|++ ++|+++. .+++|.+|++.
T Consensus       236 ~pdg~-~lyv~~~~~~~I~v~~i~~~~~~-----~~~~~~~~~-~~~p~~~~~~~dg-~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        236 TPDGR-HLYACDRTASLISVFSVSEDGSV-----LSFEGHQPT-ETQPRGFNIDHSG-KYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCCCC-EEEEecCCCCeEEEEEEeCCCCe-----EEEeEEEec-cccCCceEECCCC-CEEEEEEccCCcEEEEEEc
Confidence            99877 55555 45789999999654100     011222222 1345678999998 5666555 48999999875

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=1.9e-14  Score=131.36  Aligned_cols=212  Identities=16%  Similarity=0.187  Sum_probs=168.9

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe----eeEEeccCCCCeEEEEEcCCCCcEEEEEECC--CcEEEE
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMK  337 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~vw  337 (502)
                      ..+.+|..++....   .|++|-.+|.+.+|....+.    .+..+..+ ..+..|.-++..+.++++|+..  ..+.+|
T Consensus       103 l~~~~I~gl~~~dg---~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  103 LGTKSIKGLKLADG---TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW  178 (412)
T ss_pred             cccccccchhhcCC---EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence            34566777766533   78889999999999988442    23333332 5677777788887888889999  889999


Q ss_pred             eCCCCCCccce---------EeecCCeEEEEeCCC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769          338 DARISTHSGFK---------WAVAADVESLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       338 d~~~~~~~~~~---------~~~~~~v~~v~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      |+.+.+.+-..         ...+-.++.+.|-+. ..+.|++++.-+.|++||.+.+        .+|+..+.....++
T Consensus       179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--------RRPV~~fd~~E~~i  250 (412)
T KOG3881|consen  179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--------RRPVAQFDFLENPI  250 (412)
T ss_pred             ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc--------CcceeEeccccCcc
Confidence            99876322110         122345678888774 1458999999999999999987        58999999889999


Q ss_pred             eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +++...|.+ +++++|..-+.+..||++.++. ....+.+..|.|+++..+|.++ +||++|-|..|||+|+.+.+++..
T Consensus       251 s~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl-~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  251 SSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKL-LGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             eeeeecCCC-cEEEEecccchhheecccCcee-eccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccchhhhh
Confidence            999999998 9999999999999999999873 3445788899999999999999 599999999999999999888776


Q ss_pred             ccc
Q 010769          488 RFS  490 (502)
Q Consensus       488 ~~~  490 (502)
                      .|-
T Consensus       328 vYv  330 (412)
T KOG3881|consen  328 VYV  330 (412)
T ss_pred             hhh
Confidence            653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.66  E-value=3.5e-15  Score=140.84  Aligned_cols=183  Identities=16%  Similarity=0.243  Sum_probs=145.8

Q ss_pred             CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEE
Q 010769          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      ...|+.++.||.+.+.+ +.++.-+.+..|.+.+.+-.|+|+| .-|++++.||.|++|.-. +-...........|.|+
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCA  151 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEecc-chHHHHHhhcCceeEEE
Confidence            34788899999999987 6678888889999999999999999 889999999999999854 33333344567789999


Q ss_pred             EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       359 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      +|.|++.+.+++.+  +.+.+=.+...         ..+....+|.+-|.++.|++.. .++++|+.|-..+|||-... 
T Consensus       152 ~W~p~S~~vl~c~g--~h~~IKpL~~n---------~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~-  218 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQG--GHISIKPLAAN---------SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGA-  218 (737)
T ss_pred             EECCCCCceEEecC--CeEEEeecccc---------cceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCc-
Confidence            99999887777654  55666555543         5567788999999999999987 99999999999999997654 


Q ss_pred             eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          439 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       439 ~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                        .++....|..+|++++|.|+.  +++.++.+ ++++=..+.|
T Consensus       219 --~Lf~S~~~ey~ITSva~npd~--~~~v~S~n-t~R~~~p~~G  257 (737)
T KOG1524|consen  219 --NLFTSAAEEYAITSVAFNPEK--DYLLWSYN-TARFSSPRVG  257 (737)
T ss_pred             --ccccCChhccceeeeeecccc--ceeeeeee-eeeecCCCcc
Confidence              367778899999999999994  46666543 5664333333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.9e-14  Score=144.19  Aligned_cols=209  Identities=16%  Similarity=0.111  Sum_probs=136.4

Q ss_pred             CCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcE
Q 010769          205 DREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       205 ~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      |||+|+.||.++.+   ..|++||+.++...                         ....+.+|   ...++|+|++..+
T Consensus       211 wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------------------------~l~~~~g~---~~~~~wSPDG~~L  262 (429)
T PRK01742        211 WSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------------------------VVASFRGH---NGAPAFSPDGSRL  262 (429)
T ss_pred             EcCCCCEEEEEEecCCCcEEEEEeCCCCceE-------------------------EEecCCCc---cCceeECCCCCEE
Confidence            38999999987654   47999998653210                         11112233   3468999996544


Q ss_pred             EEEEecCCcEEEE--ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEE
Q 010769          282 LASASADKQVKIW--DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA  359 (502)
Q Consensus       282 l~sgs~Dg~v~vw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~  359 (502)
                      +++.+.+|.+.||  |+.+++. ..+..+...+.+..|+|++..+++++..+|...||++...........+..  .+..
T Consensus       263 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~  339 (429)
T PRK01742        263 AFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQ  339 (429)
T ss_pred             EEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCcc
Confidence            4445578876655  6665553 456667777889999999944555555678889988764332222222222  4578


Q ss_pred             eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC--CC
Q 010769          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS--NN  437 (502)
Q Consensus       360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~--~~  437 (502)
                      |+|++. .++..+.++ +.+||+.++.         .. .+..+ ....++.|+|++ .+|+.++.++.+.+|.+.  ++
T Consensus       340 ~SpDG~-~ia~~~~~~-i~~~Dl~~g~---------~~-~lt~~-~~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G  405 (429)
T PRK01742        340 ISADGK-TLVMINGDN-VVKQDLTSGS---------TE-VLSST-FLDESPSISPNG-IMIIYSSTQGLGKVLQLVSADG  405 (429)
T ss_pred             CCCCCC-EEEEEcCCC-EEEEECCCCC---------eE-EecCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEEECCC
Confidence            999987 555555554 5669998762         11 11111 123567899998 888888889988888763  34


Q ss_pred             CeeEEEEecCCCCCEEEEEEcCC
Q 010769          438 QPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      +  ....+..|.+.+...+|+|-
T Consensus       406 ~--~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        406 R--FKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             C--ceEEccCCCCCCCCcccCCC
Confidence            3  45666677788899999985

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2.4e-14  Score=143.35  Aligned_cols=204  Identities=14%  Similarity=0.148  Sum_probs=135.5

Q ss_pred             CCcccceeeEEecCCCCcEEEEEecC---CcEEEEECCCCee--eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 010769          263 GSHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK  337 (502)
Q Consensus       263 ~~h~~~V~~l~~~~~~~~~l~sgs~D---g~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  337 (502)
                      ..|...+.+.+|+|++. .|+.++.+   ..|++||+.+++.  +..+.+|   ...++|+|+|..++++.+.+|.+.||
T Consensus       200 t~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy  275 (429)
T PRK01742        200 NRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIY  275 (429)
T ss_pred             ccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEE
Confidence            35777899999999954 66666543   3699999988753  3334433   44689999994444445578876665


Q ss_pred             --eCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          338 --DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       338 --d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                        |+.++.... ...+...+....|+|++..+++++..+|..++|++....        .....+ .+..  ..+.|+|+
T Consensus       276 ~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--------~~~~~l-~~~~--~~~~~SpD  343 (429)
T PRK01742        276 VMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--------GGASLV-GGRG--YSAQISAD  343 (429)
T ss_pred             EEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--------CCeEEe-cCCC--CCccCCCC
Confidence              555544322 334455678899999988666666678888899876531        112222 3333  45789999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC--CCccccccc
Q 010769          416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL--SDAGISNRF  489 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~--~~~~~~~~~  489 (502)
                      + +.|+.++.++ +.+||+.+++...+.  ...  ...++.|+|+|++ |+.++.++.+.+|.+.  ++..++++.
T Consensus       344 G-~~ia~~~~~~-i~~~Dl~~g~~~~lt--~~~--~~~~~~~sPdG~~-i~~~s~~g~~~~l~~~~~~G~~~~~l~  412 (429)
T PRK01742        344 G-KTLVMINGDN-VVKQDLTSGSTEVLS--STF--LDESPSISPNGIM-IIYSSTQGLGKVLQLVSADGRFKARLP  412 (429)
T ss_pred             C-CEEEEEcCCC-EEEEECCCCCeEEec--CCC--CCCCceECCCCCE-EEEEEcCCCceEEEEEECCCCceEEcc
Confidence            8 7777777655 666999888743222  111  2356789999995 7777788888888763  455555543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3.5e-14  Score=135.39  Aligned_cols=286  Identities=15%  Similarity=0.181  Sum_probs=191.6

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      -++...-+.+.++|+|++|++.+...  -.+++|.+..-..   .+-.|-+    +-+..+.-+      +.+-..++.-
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YK--P~ikvydlanLSL---KFERhlD----ae~V~feiL------sDD~SK~v~L  112 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYK--PQIKVYDLANLSL---KFERHLD----AEVVDFEIL------SDDYSKSVFL  112 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccC--CceEEEEccccee---eeeeccc----ccceeEEEe------ccchhhheEe
Confidence            35667788999999999998887665  3567776664332   2223333    222333322      4444445555


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      ..|.+|.+..-..                         ......     -...-..++++.-.. =|++++....|.-++
T Consensus       113 ~~DR~IefHak~G-------------------------~hy~~R-----IP~~GRDm~y~~~sc-Dly~~gsg~evYRlN  161 (703)
T KOG2321|consen  113 QNDRTIEFHAKYG-------------------------RHYRTR-----IPKFGRDMKYHKPSC-DLYLVGSGSEVYRLN  161 (703)
T ss_pred             ecCceeeehhhcC-------------------------eeeeee-----cCcCCccccccCCCc-cEEEeecCcceEEEE
Confidence            5677776653211                         000000     112223445544323 244555556799999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE------eec-----CCeEEEEeCCCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------AVA-----ADVESLAWDPHA  364 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~-----~~v~~v~~~p~~  364 (502)
                      +..|+.+..|....+.++++..++.. .+|++|+.+|.|-+||.|.........      .+.     ..|+++.|+-+|
T Consensus       162 LEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g  240 (703)
T KOG2321|consen  162 LEQGRFLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG  240 (703)
T ss_pred             ccccccccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc
Confidence            99999999998888999999999988 899999999999999999876544222      122     239999999864


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                       ..+++|+..|.|.|||+|+.        ...+..-+...-+|..+.|.+.+..--+.......++|||-.++++  ...
T Consensus       241 -L~~aVGts~G~v~iyDLRa~--------~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~--~as  309 (703)
T KOG2321|consen  241 -LHVAVGTSTGSVLIYDLRAS--------KPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP--MAS  309 (703)
T ss_pred             -eeEEeeccCCcEEEEEcccC--------CceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCc--eee
Confidence             57999999999999999987        2333444555678999999886433333334456799999999985  333


Q ss_pred             ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ... ...+..+++-|++. ++.++..++.+..|=+..
T Consensus       310 iEp-t~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  310 IEP-TSDLNDFCFVPGSG-MFFTANESSKMHTYYIPS  344 (703)
T ss_pred             ccc-cCCcCceeeecCCc-eEEEecCCCcceeEEccc
Confidence            332 34588999999987 688888888777665544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=3.5e-14  Score=146.23  Aligned_cols=312  Identities=13%  Similarity=0.169  Sum_probs=193.1

Q ss_pred             CCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccc-cCCCcceeeeecCCCCCCCCCCEEE
Q 010769          136 DEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMA  213 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~~s~~~~~la  213 (502)
                      .+|...|..++.++.. .++++|+.+|   +++||......+........-... ..+...|+..       -+.++.+|
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DG---tVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~-------~~~~~~~A 1114 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDG---TVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM-------CGNGDQFA 1114 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCc---eEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe-------ccCCCeEE
Confidence            3577788888888766 9999999887   789998876554211111111111 1122233333       25799999


Q ss_pred             EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCc-EEEEEecCCcEE
Q 010769          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN-ILASASADKQVK  292 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~l~sgs~Dg~v~  292 (502)
                      +|+.||.|++..++...........                  ............|...+|....+. .|+.+..-+.|.
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~------------------~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQ------------------VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeee------------------eecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence            9999999999999863211111100                  001111112223344445443333 788888889999


Q ss_pred             EEECCCCeeeEEec--cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE--eecCCeEEEEeCCCCC--C
Q 010769          293 IWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAE--H  366 (502)
Q Consensus       293 vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~--~  366 (502)
                      .||++......+++  ...+.|++++.+|.+ +.+++|+..|.+.+||+|-+..+. .|  .+..+++.+..+|..+  .
T Consensus      1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~-sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPIL-SWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred             EecchhhhhHHhhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceee-cccCcccCCcceEEeeccCCCCc
Confidence            99998876655553  235789999999999 899999999999999999766543 34  3456778887776543  3


Q ss_pred             EEEE-Ee-CCCeEEEEECCCCCCCCCCCCC--Ccc--EEEe------cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769          367 SFVV-SL-EDGTIKGFDIRTAKSDPDSTSQ--QSS--FTLH------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       367 ~l~~-~~-~dg~i~i~d~~~~~~~~~~~~~--~~~--~~~~------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      ..++ |. ..+.|.+|++.++.........  .+.  +...      .+.-......+. .+..++++|+.|..|+.||.
T Consensus      1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-EKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc-cCCceeeecCCccceeeccC
Confidence            3443 44 5788999999987431110000  000  0000      111111222222 23479999999999999997


Q ss_pred             CCCCee----------------------------------------------EE--------EEecCCCCCEEEEEEcCC
Q 010769          435 SNNQPS----------------------------------------------CI--------ASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       435 ~~~~~~----------------------------------------------~~--------~~~~~~~~~v~~~~~spd  460 (502)
                      ......                                              ..        .....|..+|+.+++...
T Consensus      1334 ~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~ 1413 (1431)
T KOG1240|consen 1334 TRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKS 1413 (1431)
T ss_pred             CCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhcc
Confidence            542100                                              00        001235667888888776


Q ss_pred             CCcEEEEEeCCCcEEEEE
Q 010769          461 SPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       461 ~~~llasg~~dg~i~vwd  478 (502)
                      ..-+|++++.+|.|+||.
T Consensus      1414 ~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1414 EQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             CccEEEEecCCCeeeecC
Confidence            655799999999999994

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=9.1e-13  Score=119.66  Aligned_cols=234  Identities=15%  Similarity=0.229  Sum_probs=164.1

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d-  218 (502)
                      ..+..+.|+.+..+|..|+.+|    .++|..+.-..     +.|...  .+.. -++-+     |  ...++|..+.+ 
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G----yk~~~~~~~~k-----~~~~~~--~~~~-IvEmL-----F--SSSLvaiV~~~q   66 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG----YKIFSCSPFEK-----CFSKDT--EGVS-IVEML-----F--SSSLVAIVSIKQ   66 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc----eeEEecCchHH-----hhcccC--CCeE-EEEee-----c--ccceeEEEecCC
Confidence            3456667889999999999886    57776654432     112111  1110 01111     1  34566655544 


Q ss_pred             -CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          219 -PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       219 -g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                       +.+++.++..                           .... ........|.++.++.+   .|+.+-.+ .|.|||++
T Consensus        67 pr~Lkv~~~Kk---------------------------~~~I-Ce~~fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~  114 (391)
T KOG2110|consen   67 PRKLKVVHFKK---------------------------KTTI-CEIFFPTSILAVRMNRK---RLVVCLEE-SIYIYDIK  114 (391)
T ss_pred             CceEEEEEccc---------------------------CceE-EEEecCCceEEEEEccc---eEEEEEcc-cEEEEecc
Confidence             3467766632                           1111 11124578999999876   46666654 49999999


Q ss_pred             CCeeeEEecc---CCCCeEEEEEcCCCCcEEEEE--ECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEe
Q 010769          298 AGKCNLTLEH---HTDKVQAVAWNHHSPQILLSG--SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       298 ~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  372 (502)
                      +.+.++++..   +...+.++.+++.+ .+++--  ...|.|.+||+.+-+.......|.+.+.+++|+++|. ++++++
T Consensus       115 ~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATAS  192 (391)
T KOG2110|consen  115 DMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATAS  192 (391)
T ss_pred             cceeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEec
Confidence            9999998853   44557777777766 555542  2368999999999888887889999999999999876 899999


Q ss_pred             CCCe-EEEEECCCCCCCCCCCCCCccEEEecC--CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          373 EDGT-IKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       373 ~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      ..|+ ||+|.+..+         ..++.+...  ...|.+++|+|++ .+|++.|..++|++|.+..
T Consensus       193 eKGTVIRVf~v~~G---------~kl~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  193 EKGTVIRVFSVPEG---------QKLYEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             cCceEEEEEEcCCc---------cEeeeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecc
Confidence            9996 799999887         556666533  3468999999998 8999999999999998864

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=3e-13  Score=135.47  Aligned_cols=118  Identities=19%  Similarity=0.304  Sum_probs=99.4

Q ss_pred             CCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC--C--eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769          263 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--G--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       263 ~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~--~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  338 (502)
                      ..|+..++|.+++|. +.++|+|..||.|.+|.--.  .  ...+.+.-|...|.++.|+++| .+|++|+..|.+.+|.
T Consensus       202 ~~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq  279 (792)
T KOG1963|consen  202 VHHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQ  279 (792)
T ss_pred             hhhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEe
Confidence            357778999999999 66999999999999996432  1  2345567799999999999999 8999999999999999


Q ss_pred             CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCC
Q 010769          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  384 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~  384 (502)
                      +.+++ ...+.+..+.|..+.++|++. +.++...|+.|.+.....
T Consensus       280 ~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  280 LETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             ecCCC-cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccc
Confidence            99988 555778899999999999876 677777899998887643

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.63  E-value=5e-15  Score=139.98  Aligned_cols=205  Identities=14%  Similarity=0.184  Sum_probs=143.5

Q ss_pred             ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEe
Q 010769          145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW  224 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iw  224 (502)
                      ..=.|.+--|++|..-+     .|+.++........|+.....+...-.+|+.|++-      +...++++-.+|.+++|
T Consensus       179 ~~a~~~g~dllIGf~tG-----qvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg------~~~~Fl~a~~sGnlyly  247 (636)
T KOG2394|consen  179 FTATPKGLDLLIGFTTG-----QVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG------SDSLFLVAHASGNLYLY  247 (636)
T ss_pred             cccCCCCcceEEeeccC-----ceEEecchhhHHHHhhhhcccccccceEEEEEEeC------CCceEEEEEecCceEEe
Confidence            33456777888888777     44444333222234455444445566799999843      56677777889999999


Q ss_pred             eCCCCCCCCc-eeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeE
Q 010769          225 DLDVIDEVQP-HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL  303 (502)
Q Consensus       225 dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~  303 (502)
                      |......... ....-.....-+.-..+.++...++..+.--.+.|+..+|+|+ +.+||+.|.||.+||+|..+.+.+.
T Consensus       248 ~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg  326 (636)
T KOG2394|consen  248 DKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD-GKYLATVSQDGFLRIFDFDTQELLG  326 (636)
T ss_pred             eccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC-CceEEEEecCceEEEeeccHHHHHH
Confidence            8754322211 1110000000000011122222344444444569999999998 5699999999999999999988888


Q ss_pred             EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769          304 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       304 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p  362 (502)
                      .++..-+...|++|+|+| +++++|+.|-.|.||.+...+.+..-.+|.+.|..|+|.|
T Consensus       327 ~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  327 VMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            887778899999999999 9999999999999999999888887789999999999997

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=7e-15  Score=135.53  Aligned_cols=193  Identities=19%  Similarity=0.266  Sum_probs=145.6

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |+.+|..|++|+.||++|||++....                           .......|...|.+|.|+|+ +.+|++
T Consensus       152 f~~~gs~latgg~dg~lRv~~~Ps~~---------------------------t~l~e~~~~~eV~DL~FS~d-gk~las  203 (398)
T KOG0771|consen  152 FNGDGSKLATGGTDGTLRVWEWPSML---------------------------TILEEIAHHAEVKDLDFSPD-GKFLAS  203 (398)
T ss_pred             EcCCCCEeeeccccceEEEEecCcch---------------------------hhhhhHhhcCccccceeCCC-CcEEEE
Confidence            37899999999999999999976432                           22234468899999999999 669999


Q ss_pred             EecCCcEEEEECCCCeeeEEecc--CCCCeEEEEEcCCC--Cc-EEEEE-ECCCcEEEEeCCCCCCc-----cceEeecC
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHS--PQ-ILLSG-SFDRSVVMKDARISTHS-----GFKWAVAA  353 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~--~~-~l~s~-~~dg~i~vwd~~~~~~~-----~~~~~~~~  353 (502)
                      -+.| ..+||+++++.++.....  -......+.|+.++  .. ++++. ..-+.|+.|++......     ........
T Consensus       204 ig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~  282 (398)
T KOG0771|consen  204 IGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK  282 (398)
T ss_pred             ecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence            9999 999999999977666542  23455667777654  12 33332 33466777776543321     11122345


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .|.+++.+++|. +++.|+.+|.|.+++....        ........+|...|+.+.|+|+. +++++.+.+..+.|..
T Consensus       283 siSsl~VS~dGk-f~AlGT~dGsVai~~~~~l--------q~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  283 SISSLAVSDDGK-FLALGTMDGSVAIYDAKSL--------QRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTK  352 (398)
T ss_pred             cceeEEEcCCCc-EEEEeccCCcEEEEEecee--------eeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEE
Confidence            799999999876 8999999999999999876        34455567899999999999997 8999999999888887


Q ss_pred             CCC
Q 010769          434 LSN  436 (502)
Q Consensus       434 ~~~  436 (502)
                      +.-
T Consensus       353 l~v  355 (398)
T KOG0771|consen  353 LAV  355 (398)
T ss_pred             Eee
Confidence            755

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.62  E-value=4.1e-14  Score=145.68  Aligned_cols=224  Identities=19%  Similarity=0.270  Sum_probs=164.2

Q ss_pred             cccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC-------eeeEEeccCCCCeEEEEEcCCCCcEEEEE
Q 010769          256 SSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSG  328 (502)
Q Consensus       256 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  328 (502)
                      ......+..|...|..++.++....+++|||.||+|++|+++.-       +...++......+.++...+.+ ..++.+
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~ 1116 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVS 1116 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEE
Confidence            45556677899999999999987689999999999999998631       2334444456789999999988 889999


Q ss_pred             ECCCcEEEEeCCCCCCcc--ce------EeecCC-eEEEEeCCCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE
Q 010769          329 SFDRSVVMKDARISTHSG--FK------WAVAAD-VESLAWDPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF  398 (502)
Q Consensus       329 ~~dg~i~vwd~~~~~~~~--~~------~~~~~~-v~~v~~~p~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  398 (502)
                      +.||.|++.++.......  ..      ....+. +..-+|..... ..++.++..+.|..||+++.         ...+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~---------~~~w 1187 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR---------HDAW 1187 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh---------hhHH
Confidence            999999999987521111  00      011222 33334443333 37888999999999999987         3334


Q ss_pred             EE--ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCC---CcEEEEEe-CCC
Q 010769          399 TL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGG-SKG  472 (502)
Q Consensus       399 ~~--~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~---~~llasg~-~dg  472 (502)
                      ++  ....+.|++++.+|.+ .++++|+..|.+.+||++-+.+.+......+ .+|..+..+|-.   .+.+++|. ..+
T Consensus      1188 ~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred             hhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCC
Confidence            33  3345789999999988 8999999999999999999987766666544 778888777643   34444444 567


Q ss_pred             cEEEEECCCCccccccccC
Q 010769          473 KLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       473 ~i~vwd~~~~~~~~~~~~~  491 (502)
                      .|.+|++.+|.+-......
T Consensus      1266 evs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred             ceeeeecccCcceEEEEcC
Confidence            8999999999765554444

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.59  E-value=1.6e-14  Score=141.29  Aligned_cols=296  Identities=19%  Similarity=0.291  Sum_probs=212.3

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d  218 (502)
                      +..+.++.++|.|+-+|.|+..      .+|+.+......+..+.||.  .|-+.-.+.|..     +|...+-++.+..
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~------gl~i~dld~p~~ppr~l~h~--tpw~vad~qws~-----h~a~~~wiVsts~   90 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQ------GLYIIDLDDPFTPPRWLHHI--TPWQVADVQWSP-----HPAKPYWIVSTSN   90 (1081)
T ss_pred             cCcccceeeccccchhhhhhhc------CeEEEeccCCCCCceeeecc--Ccchhcceeccc-----CCCCceeEEecCc
Confidence            4578999999999999999865      56677766666678888884  333444556632     2345566666666


Q ss_pred             CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~  298 (502)
                      ..-.||++...                        ....+...+.+|+.+|+.+-|+|+.+.+|++++.|-.|..||+++
T Consensus        91 qkaiiwnlA~s------------------------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS  146 (1081)
T KOG0309|consen   91 QKAIIWNLAKS------------------------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS  146 (1081)
T ss_pred             chhhhhhhhcC------------------------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence            66669998632                        235566677899999999999999999999999999999999987


Q ss_pred             C-eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-eEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          299 G-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       299 ~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      . .++..+..-......++|+-..+. +++.+..+.|.+||+|.+..+.. ..++-..+..+.|+..-...+.+++.||+
T Consensus       147 p~~p~ys~~~w~s~asqVkwnyk~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t  225 (1081)
T KOG0309|consen  147 PHRPFYSTSSWRSAASQVKWNYKDPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT  225 (1081)
T ss_pred             CCcceeeeecccccCceeeecccCcc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence            6 455665555566778999988855 45556778899999998776543 33456667778887765557899999999


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC-cEEEEE---------CCCCCeeEEEEec
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK-MVKLWD---------LSNNQPSCIASRN  446 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg-~i~vwd---------~~~~~~~~~~~~~  446 (502)
                      |++||.....        ...........+|..-++.|.|..+++--...+ .+.+++         ..+. +..+..+.
T Consensus       226 vkfw~y~kSt--------~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~-~~pVh~F~  296 (1081)
T KOG0309|consen  226 VKFWDYSKST--------TESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL-NTPVHTFV  296 (1081)
T ss_pred             eeeecccccc--------cccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccC-Ccceeeec
Confidence            9999988652        222333345667777778887655544433222 333333         3322 34688999


Q ss_pred             CCCCCEEEEEEcCC---------CCcEEEEEeCCCcEEEEECCC
Q 010769          447 PKAGAVFSVAFSED---------SPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       447 ~~~~~v~~~~~spd---------~~~llasg~~dg~i~vwd~~~  481 (502)
                      +|...|..+.|-..         ..|-|+|-+.|..+++|-+.+
T Consensus       297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            99998887777543         246799999999999999864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.56  E-value=7.7e-12  Score=121.58  Aligned_cols=278  Identities=14%  Similarity=0.168  Sum_probs=174.3

Q ss_pred             ceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC----CCcEEEeeCCCCC-CCCceeee
Q 010769          164 SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM----EPAIEIWDLDVID-EVQPHVIL  238 (502)
Q Consensus       164 ~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~----dg~I~iwdl~~~~-~~~~~~~l  238 (502)
                      ..|.++.++...+   .|...+......-|..+++       +|++++|.+...    .|.|..|.+.... .+..    
T Consensus        13 ~gI~~~~~d~~~g---~l~~~~~~~~~~~Ps~l~~-------~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~----   78 (345)
T PF10282_consen   13 GGIYVFRFDEETG---TLTLVQTVAEGENPSWLAV-------SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL----   78 (345)
T ss_dssp             TEEEEEEEETTTT---EEEEEEEEEESSSECCEEE--------TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE----
T ss_pred             CcEEEEEEcCCCC---CceEeeeecCCCCCceEEE-------EeCCCEEEEEEccccCCCCEEEEEECCCcceeEE----
Confidence            4677777776766   6665554444444444444       788999888766    4789999886421 1111    


Q ss_pred             CCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC-CeeeEE---ec--------
Q 010769          239 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNLT---LE--------  306 (502)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~-~~~~~~---~~--------  306 (502)
                                          .............++++|+++.++++...+|+|.++++.. +.....   +.        
T Consensus        79 --------------------~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~  138 (345)
T PF10282_consen   79 --------------------LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP  138 (345)
T ss_dssp             --------------------EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred             --------------------eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence                                1111112345567999999654444445689999999986 433222   21        


Q ss_pred             --cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-cc----ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEE
Q 010769          307 --HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SG----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG  379 (502)
Q Consensus       307 --~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~----~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i  379 (502)
                        .......++.|+|++..++++.-....|.+|++..... ..    .........+.++|+|++..++++.-.++.|.+
T Consensus       139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v  218 (345)
T PF10282_consen  139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV  218 (345)
T ss_dssp             TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence              12356789999999944444444456899999977652 11    112345668999999998876777778899999


Q ss_pred             EECCCCCCCCCCCCCCccEEEecC------CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC--CCCeeEEEEecCCCCC
Q 010769          380 FDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGSTDKMVKLWDLS--NNQPSCIASRNPKAGA  451 (502)
Q Consensus       380 ~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~  451 (502)
                      |++......     ...+..+...      ......|+++|++..++++....++|.+|++.  ++++..+.........
T Consensus       219 ~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~  293 (345)
T PF10282_consen  219 FDYDPSDGS-----LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF  293 (345)
T ss_dssp             EEEETTTTE-----EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS
T ss_pred             EeecccCCc-----eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC
Confidence            998832110     1222222211      12578899999994444555567889999993  3555555555444455


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       452 v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      .+.++++|+|++|+++...++.|.+|++.
T Consensus       294 Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  294 PRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            89999999999877777778899999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=4e-13  Score=118.56  Aligned_cols=156  Identities=14%  Similarity=0.257  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCcEEEEEEC---------CCcEEEEeCCCCCCccceE--eecCCeEEEEeCCCCCCEEEE-EeCCCeEEEE
Q 010769          313 QAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVV-SLEDGTIKGF  380 (502)
Q Consensus       313 ~~l~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~i~  380 (502)
                      ..+.|++.|..+++....         -+...+|-++.........  ...++|..++|+|++..++++ |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            467899999655555541         2345666665444333233  334579999999998755444 4467899999


Q ss_pred             ECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCCeeEEEEecCCCCCEEEEEE
Q 010769          381 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF  457 (502)
Q Consensus       381 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~  457 (502)
                      |++.          ..+..+.  ...+..+.|+|+| ++|++++.   .|.|.+||+++.+  .+.... | ..++.++|
T Consensus        89 d~~~----------~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~~-~-~~~t~~~W  151 (194)
T PF08662_consen   89 DVKG----------KKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKK--KISTFE-H-SDATDVEW  151 (194)
T ss_pred             cCcc----------cEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCE--Eeeccc-c-CcEEEEEE
Confidence            9972          4555553  5678899999998 88888764   4669999999766  343333 3 34789999


Q ss_pred             cCCCCcEEEEEeC-----CCcEEEEECCCCcccc
Q 010769          458 SEDSPFVLAIGGS-----KGKLEIWDTLSDAGIS  486 (502)
Q Consensus       458 spd~~~llasg~~-----dg~i~vwd~~~~~~~~  486 (502)
                      +|+|+|++++.+.     |+.++||+.. |+.+.
T Consensus       152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  152 SPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             cCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence            9999985555443     7889999995 55543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=3e-12  Score=128.02  Aligned_cols=206  Identities=11%  Similarity=0.087  Sum_probs=130.1

Q ss_pred             CcccceeeEEecCCCCcEEEEEe---cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEe
Q 010769          264 SHTDSVLGLAWNKEFRNILASAS---ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD  338 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs---~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd  338 (502)
                      .+...+.+.+|+|+|. .|+..+   ....|.+|++.+++.... ......+..+.|+|+|..++++.+.+|  .|.+||
T Consensus       196 ~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        196 RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            3567899999999965 555443   235799999988854332 223334557899999954555555555  488899


Q ss_pred             CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEE--ECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF--DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      +.++.... .......+....|+|++..+++++...|...+|  ++.++          ....+..+........|+|+|
T Consensus       274 ~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g----------~~~~lt~~~~~~~~~~~SpDG  342 (429)
T PRK03629        274 LASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG----------APQRITWEGSQNQDADVSSDG  342 (429)
T ss_pred             CCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC----------CeEEeecCCCCccCEEECCCC
Confidence            98765433 233345678899999987555555555555555  55443          223344444556778999998


Q ss_pred             CCEEEEEeC-C--CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc---EEEEECCCCccccccc
Q 010769          417 PNLLATGST-D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK---LEIWDTLSDAGISNRF  489 (502)
Q Consensus       417 ~~~l~t~s~-d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~---i~vwd~~~~~~~~~~~  489 (502)
                       ++|+..+. +  ..|.+||+.++....+..  .  .......|+|||++ |+.++.++.   +.++++. +...+++.
T Consensus       343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~--~--~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~-G~~~~~l~  414 (429)
T PRK03629        343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLTD--T--FLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTD-GRFKARLP  414 (429)
T ss_pred             -CEEEEEEccCCCceEEEEECCCCCeEEeCC--C--CCCCCceECCCCCE-EEEEEcCCCceEEEEEECC-CCCeEECc
Confidence             66655543 3  358889998887433321  1  22346789999996 555555543   6777773 44444443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.56  E-value=8.6e-13  Score=118.60  Aligned_cols=296  Identities=16%  Similarity=0.224  Sum_probs=180.5

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC--Ccee---eeeccc--------cCCCcceeeeecCCCC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLY---VHHHII--------IPAFPLCMAWLDCPLK  204 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~--~~l~---~~~~~~--------~~~~~~~~~w~~~~~~  204 (502)
                      +.+-|.++.|..+|.+|++|...|     +|-.|.......  -+++   ..|+..        +......+.|+.    
T Consensus        24 eadiis~vef~~~Ge~LatGdkgG-----RVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~----   94 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGG-----RVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD----   94 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCC-----eEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC----
Confidence            356789999999999999999887     665555433211  1122   122211        222345677753    


Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                       ..+...++..+.|.+|++|.+.....                      ++........+-...|++|..-.       .
T Consensus        95 -~~n~a~FLlstNdktiKlWKi~er~~----------------------k~~~~~~~~~~~~~~~~~lr~p~-------~  144 (433)
T KOG1354|consen   95 -DGNLAEFLLSTNDKTIKLWKIRERGS----------------------KKEGYNLPEEGPPGTITSLRLPV-------E  144 (433)
T ss_pred             -CCCccEEEEecCCcceeeeeeecccc----------------------ccccccccccCCCCccceeecee-------e
Confidence             13466788888999999999863211                      10111111112233344443211       1


Q ss_pred             EecCCcEEEEECCCCeeeEEe-ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe--------ecCCe
Q 010769          285 ASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADV  355 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v  355 (502)
                      +..+-.+-      -.+.+.+ .+|+..|.++.++.+. ..++++ .|=.|.+|++...........        ...-|
T Consensus       145 ~~~~~~ve------a~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVI  216 (433)
T KOG1354|consen  145 GRHDLEVE------ASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVI  216 (433)
T ss_pred             ccccceee------eeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHH
Confidence            11111110      1223333 4689999999999998 666665 477899999875543322221        22348


Q ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC-------CCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769          356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      ++..|+|..-+.|+-++..|+|++.|+|........       ..+....-+..--..|+.+.|++.| +++++-.. -+
T Consensus       217 TsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-lt  294 (433)
T KOG1354|consen  217 TSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LT  294 (433)
T ss_pred             hhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ce
Confidence            899999988889999999999999999964221100       0001111112223578999999998 88887543 57


Q ss_pred             EEEEECCC-CCeeEEEEecCCC------------CC---EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          429 VKLWDLSN-NQPSCIASRNPKA------------GA---VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       429 i~vwd~~~-~~~~~~~~~~~~~------------~~---v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      |++||+.. .+|  +.+.+.|.            ..   -+.++|+.++.+ ++||+....++++++..|...
T Consensus       295 vk~wD~nme~~p--v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~-v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  295 VKLWDLNMEAKP--VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY-VMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             eEEEeccccCCc--ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce-EecccccceEEEecCCCCcce
Confidence            99999954 343  33333332            12   357899999985 999999999999997665543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=4.1e-12  Score=127.01  Aligned_cols=209  Identities=16%  Similarity=0.056  Sum_probs=131.9

Q ss_pred             CCCCCEEEEecC---CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          206 REKGNFMAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       206 s~~~~~la~g~~---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      ||+|+.||..+.   ...|.+|++..+...                         ....   ....+..++|+|++..++
T Consensus       207 SPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------------------------~l~~---~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        207 SPDGSKLAYVTFESGRSALVIQTLANGAVR-------------------------QVAS---FPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             cCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EccC---CCCCcCCeEECCCCCEEE
Confidence            899999987542   357899998653210                         1111   122345689999966555


Q ss_pred             EEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEE--eCCCCCCccceEeecCCeEE
Q 010769          283 ASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMK--DARISTHSGFKWAVAADVES  357 (502)
Q Consensus       283 ~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vw--d~~~~~~~~~~~~~~~~v~~  357 (502)
                      ++.+.+|  .|.+||+.+++... +..+...+....|+|++ +.|+.++ .++...+|  ++.++.... ..........
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~  335 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQD  335 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCccC
Confidence            5555555  48899998887654 43345567889999999 5554444 44554555  555543322 2223344567


Q ss_pred             EEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc---EEEE
Q 010769          358 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM---VKLW  432 (502)
Q Consensus       358 v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~---i~vw  432 (502)
                      ..|+|++..+++++..++  .|.+||+.++.          ...+.. ........|+|+| .+|+.++.++.   +.++
T Consensus       336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----------~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~  403 (429)
T PRK03629        336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------VQVLTD-TFLDETPSIAPNG-TMVIYSSSQGMGSVLNLV  403 (429)
T ss_pred             EEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEeCC-CCCCCCceECCCC-CEEEEEEcCCCceEEEEE
Confidence            899999885555554443  58888987652          222221 1234567899998 77777776654   6777


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ++....   ...+..|.+.+...+|+|-
T Consensus       404 ~~~G~~---~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        404 STDGRF---KARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             ECCCCC---eEECccCCCCcCCcccCCC
Confidence            875544   3445567778888999873

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.7e-12  Score=129.88  Aligned_cols=200  Identities=16%  Similarity=0.161  Sum_probs=128.2

Q ss_pred             CcccceeeEEecCCCCcEEEEEecC---CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeC-
Q 010769          264 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA-  339 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~D---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~-  339 (502)
                      .+...+.+.+|+|++. .|+..+..   ..|.+||+.+++... +....+.+.+..|+|++..++++.+.+|...||.+ 
T Consensus       193 ~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        193 SSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             cCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            4667899999999954 66655532   359999999887543 33334566789999999555567788887776654 


Q ss_pred             -CCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769          340 -RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       340 -~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                       ..+... ....+........|+|++..+++++...|...+|.+....        .....+..+.......+|+|+| +
T Consensus       271 ~~~~~~~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--------g~~~~lt~~g~~~~~~~~SpDG-~  340 (427)
T PRK02889        271 ADGSGLR-RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--------GAAQRVTFTGSYNTSPRISPDG-K  340 (427)
T ss_pred             CCCCCcE-ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--------CceEEEecCCCCcCceEECCCC-C
Confidence             333322 1223334456788999988666666556777777654321        1122222233344568899998 6


Q ss_pred             EEEEEeCCC---cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc--EEEEEC
Q 010769          419 LLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDT  479 (502)
Q Consensus       419 ~l~t~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~--i~vwd~  479 (502)
                      +|+..+.++   .|.+||+.+++...+.   .. .......|+|+|+++++++...|.  +.+.++
T Consensus       341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt---~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        341 LLAYISRVGGAFKLYVQDLATGQVTALT---DT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             EEEEEEccCCcEEEEEEECCCCCeEEcc---CC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            776665544   5999999888743322   11 234678999999976666655554  555555

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=2.2e-12  Score=129.70  Aligned_cols=203  Identities=12%  Similarity=0.088  Sum_probs=135.7

Q ss_pred             CcccceeeEEecCCCCcEEEEEec---CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc--EEEEe
Q 010769          264 SHTDSVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKD  338 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~---Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~vwd  338 (502)
                      .|...+.+.+|+|++. .|+..+.   +..|.+||+.+++.. .+..+.+.+.+..|+|+|..++++.+.++.  |.+||
T Consensus       199 ~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  276 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD  276 (435)
T ss_pred             cCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence            5777899999999955 5655543   468999999888653 344566678889999999555667776665  67778


Q ss_pred             CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      +.++.... ...+........|+|++..+++++..+|  .|+++|+...          ....+..+...+....|+|+|
T Consensus       277 ~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~----------~~~~lt~~~~~~~~~~~SpdG  345 (435)
T PRK05137        277 LRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS----------NPRRISFGGGRYSTPVWSPRG  345 (435)
T ss_pred             CCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC----------CeEEeecCCCcccCeEECCCC
Confidence            87765433 3334445677899999875555554444  5777787643          233444445567778999999


Q ss_pred             CCEEEEEeCC---CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCcc
Q 010769          417 PNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDAG  484 (502)
Q Consensus       417 ~~~l~t~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d-----g~i~vwd~~~~~~  484 (502)
                       +.|+..+.+   ..|.+|++..+.... ..   ....+....|+|||++++.++...     ..|+++++..+..
T Consensus       346 -~~ia~~~~~~~~~~i~~~d~~~~~~~~-lt---~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        346 -DLIAFTKQGGGQFSIGVMKPDGSGERI-LT---SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             -CEEEEEEcCCCceEEEEEECCCCceEe-cc---CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence             666655443   358888986654322 11   122467889999999755554433     2578888865543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.55  E-value=1e-11  Score=120.66  Aligned_cols=253  Identities=13%  Similarity=0.098  Sum_probs=158.1

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      ++|+|+++.+++.||.|.++|+.+.+.+...                           . -.....+++++++|+.++++
T Consensus        44 ~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i---------------------------~-~G~~~~~i~~s~DG~~~~v~   95 (369)
T PF02239_consen   44 FSPDGRYLYVANRDGTVSVIDLATGKVVATI---------------------------K-VGGNPRGIAVSPDGKYVYVA   95 (369)
T ss_dssp             -TT-SSEEEEEETTSEEEEEETTSSSEEEEE---------------------------E--SSEEEEEEE--TTTEEEEE
T ss_pred             ecCCCCEEEEEcCCCeEEEEECCcccEEEEE---------------------------e-cCCCcceEEEcCCCCEEEEE
Confidence            3899999999999999999999864432221                           1 12346789999997655556


Q ss_pred             EecCCcEEEEECCCCeeeEEeccC-------CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecCCeE
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVE  356 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~  356 (502)
                      +...+.+.++|..+.++++.+...       ...+.++..+|..+.++++.-..+.|.+.|........ ..........
T Consensus        96 n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~  175 (369)
T PF02239_consen   96 NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPH  175 (369)
T ss_dssp             EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEE
T ss_pred             ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccc
Confidence            678999999999999998887432       34678888888884455555556888888887664433 2334455678


Q ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCC----------------------------------------------CC
Q 010769          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD----------------------------------------------PD  390 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----------------------------------------------~~  390 (502)
                      ...|+|++.+++++......|.++|..+....                                              ..
T Consensus       176 D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d  255 (369)
T PF02239_consen  176 DGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHD  255 (369)
T ss_dssp             EEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred             ccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccch
Confidence            89999988766666666777888887665320                                              00


Q ss_pred             CCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE----eCCCcEEEEECCCCCeeEEEEecC-CCCCEEEEEEcCCCCcEE
Q 010769          391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATG----STDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVL  465 (502)
Q Consensus       391 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~----s~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~spd~~~ll  465 (502)
                      ....+.+..+.....+ .-+..+|++ .++.+.    ...++|.++|..+.+  .+..+.. ....+..+.|+++|+++.
T Consensus       256 ~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~tl~--~~~~i~~~~~~~~~h~ef~~dG~~v~  331 (369)
T PF02239_consen  256 DYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKTLK--VVKTITPGPGKRVVHMEFNPDGKEVW  331 (369)
T ss_dssp             TTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGTE--EEE-HHHHHT--EEEEEE-TTSSEEE
T ss_pred             hhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcCcc--eeEEEeccCCCcEeccEECCCCCEEE
Confidence            0112233333333334 556779988 666666    445889999999885  3334322 223589999999999877


Q ss_pred             EEEeCCC-cEEEEECCCCccccccc
Q 010769          466 AIGGSKG-KLEIWDTLSDAGISNRF  489 (502)
Q Consensus       466 asg~~dg-~i~vwd~~~~~~~~~~~  489 (502)
                      ++.-..+ .|.|||..+.+.+.++.
T Consensus       332 vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  332 VSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCCEEEEEECCCcEEEEEEE
Confidence            7776665 89999999999887765

...

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.55  E-value=3.2e-13  Score=117.14  Aligned_cols=159  Identities=22%  Similarity=0.291  Sum_probs=126.3

Q ss_pred             CcccceeeEEecCCC--CcEEEEEecCCcEEEEECCCCee----------eEEeccCCCCeEEEEEcCCCCcEEEEEECC
Q 010769          264 SHTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAGKC----------NLTLEHHTDKVQAVAWNHHSPQILLSGSFD  331 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~--~~~l~sgs~Dg~v~vwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  331 (502)
                      +..+.++|..|.-..  ..+|++|-.+|.|.+||+.++..          ......|..+|.++.|.+.- ..=++|+.+
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~  226 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGAD  226 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCcc
Confidence            455778888864332  34677888999999999998733          33445689999999998765 455778888


Q ss_pred             CcEEEEeCCCCC--Cc--cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769          332 RSVVMKDARIST--HS--GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       332 g~i~vwd~~~~~--~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      ..+..|.+.-..  ..  ....-....+..+...|+++ ++++++.|+.|++|..++.         .++..+.-|...|
T Consensus       227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl---------~pLAVLkyHsagv  296 (323)
T KOG0322|consen  227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGV  296 (323)
T ss_pred             ccceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC---------Cchhhhhhhhcce
Confidence            888999886432  11  11222345688899999876 9999999999999999997         8888999999999


Q ss_pred             eEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769          408 CTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      ++++|+|+. .++|++|.|++|.+|++
T Consensus       297 n~vAfspd~-~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  297 NAVAFSPDC-ELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEEeCCCC-chhhhccCCceEEeeec
Confidence            999999986 89999999999999986

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=2.4e-12  Score=129.29  Aligned_cols=200  Identities=17%  Similarity=0.160  Sum_probs=130.6

Q ss_pred             CcccceeeEEecCCCCcEEEEEec---CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEe
Q 010769          264 SHTDSVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD  338 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~---Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd  338 (502)
                      .|...+.+.+|+|++. .|+.++.   ...|.+|++.+++... +..+.+...+..|+|+|..++++.+.+|  .|++||
T Consensus       201 ~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d  278 (433)
T PRK04922        201 RSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD  278 (433)
T ss_pred             cCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence            4667899999999955 6666653   3469999998876533 3334455568899999955666666666  589999


Q ss_pred             CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe--EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      +.++.... ...+.......+|+|++..+++++...|.  |+++++.++         . ...+..+......++|+|+|
T Consensus       279 ~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---------~-~~~lt~~g~~~~~~~~SpDG  347 (433)
T PRK04922        279 LGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---------S-AERLTFQGNYNARASVSPDG  347 (433)
T ss_pred             CCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C-eEEeecCCCCccCEEECCCC
Confidence            98766433 23333445678999998755555555555  666666544         1 22232333445578999998


Q ss_pred             CCEEEEEeCCC---cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC--CcEEEEECCC
Q 010769          417 PNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLS  481 (502)
Q Consensus       417 ~~~l~t~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d--g~i~vwd~~~  481 (502)
                       +.|+..+.++   .|.+||+.+++...+   . +........|+|+|++++++....  +.|.++++..
T Consensus       348 -~~Ia~~~~~~~~~~I~v~d~~~g~~~~L---t-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        348 -KKIAMVHGSGGQYRIAVMDLSTGSVRTL---T-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             -CEEEEEECCCCceeEEEEECCCCCeEEC---C-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence             6666554332   599999988774322   2 222345679999999755555443  3577777744

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=6.8e-13  Score=121.26  Aligned_cols=214  Identities=13%  Similarity=0.155  Sum_probs=159.5

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      ...|++|..+|.+.+|....++.-.                       .+...+..+ ..+..|.-++...+++|+|+..
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hs-----------------------s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke  170 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHS-----------------------SKLIKLATG-PGLYDVRQTDTDPYIVATGGKE  170 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCcccc-----------------------ccceeeecC-CceeeeccCCCCCceEecCchh
Confidence            4467778889999999987543211                       011111122 5567777777777889999998


Q ss_pred             --CcEEEEECCCCeeeEEeccC---------CCCeEEEEEcCC--CCcEEEEEECCCcEEEEeCCCCCCccceE-eecCC
Q 010769          289 --KQVKIWDVAAGKCNLTLEHH---------TDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHSGFKW-AVAAD  354 (502)
Q Consensus       289 --g~v~vwd~~~~~~~~~~~~h---------~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~  354 (502)
                        ..+++||+.+.+.+.+-+.-         .-.++.+.|-+.  . +.|++++.-+.+++||.+.++.+...+ -...+
T Consensus       171 ~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~  249 (412)
T KOG3881|consen  171 NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFDFLENP  249 (412)
T ss_pred             cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEeccccCc
Confidence              88999999988665544321         124677888776  4 789999999999999999877665444 34678


Q ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      ++++...|.+. ++++|..-|.+..||+|.+        ......+.+..+.|++|..+|.. .+|++||-|..|+|+|+
T Consensus       250 is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~--------kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  250 ISSTGLTPSGN-FIYTGNTKGQLAKFDLRGG--------KLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDI  319 (412)
T ss_pred             ceeeeecCCCc-EEEEecccchhheecccCc--------eeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeec
Confidence            99999999765 8999999999999999987        23444588889999999999987 89999999999999999


Q ss_pred             CCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          435 SNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       435 ~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      .+.++......   ...++++-+.++
T Consensus       320 ktrkll~kvYv---Ks~lt~il~~~~  342 (412)
T KOG3881|consen  320 KTRKLLHKVYV---KSRLTFILLRDD  342 (412)
T ss_pred             ccchhhhhhhh---hccccEEEecCC
Confidence            99663222222   244666666554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=4.9e-12  Score=127.03  Aligned_cols=211  Identities=15%  Similarity=0.096  Sum_probs=131.7

Q ss_pred             CCCCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC
Q 010769          203 LKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       203 ~~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                      +.|+|+|+.|+..+..   ..|.+|++..+...                            .+..+.....+++|+|++.
T Consensus       209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----------------------------~l~~~~g~~~~~~~SpDG~  260 (433)
T PRK04922        209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----------------------------LVASFRGINGAPSFSPDGR  260 (433)
T ss_pred             ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----------------------------EeccCCCCccCceECCCCC
Confidence            3448999999987643   46999998653210                            0112233445789999976


Q ss_pred             cEEEEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-CCCc--EEEEeCCCCCCccceEeecCC
Q 010769          280 NILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRS--VVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       280 ~~l~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~--i~vwd~~~~~~~~~~~~~~~~  354 (502)
                      .++++.+.+|  .|.+||+.+++.. .+..+.......+|+|++ +.|+.++ .+|.  |.++++.++...... .....
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~  337 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNY  337 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeEEee-cCCCC
Confidence            6666767666  5999999887653 455555566788999999 5555444 4555  666666655433222 22334


Q ss_pred             eEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC---CCcE
Q 010769          355 VESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DKMV  429 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~---dg~i  429 (502)
                      ....+|+|++..++++...++  .|.+||+.++.         . ..+. +........|+|+| ++|+..+.   .+.|
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---------~-~~Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L  405 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---------V-RTLT-PGSLDESPSFAPNG-SMVLYATREGGRGVL  405 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---------e-EECC-CCCCCCCceECCCC-CEEEEEEecCCceEE
Confidence            557899999885444444333  58999987652         1 1222 33345567999998 65555444   2357


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcC
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSE  459 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp  459 (502)
                      .++++....   ...+..+.+.+...+|+|
T Consensus       406 ~~~~~~g~~---~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        406 AAVSTDGRV---RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEECCCCc---eEEcccCCCCCCCCccCC
Confidence            788886543   233333456677778876

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.53  E-value=5.2e-14  Score=125.56  Aligned_cols=232  Identities=17%  Similarity=0.247  Sum_probs=163.1

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |||+|+++|+.+.- .+.|-|..+.+..+-+.                            --+.|.-+.|..+...+|..
T Consensus        16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~----------------------------cldki~yieW~ads~~ilC~   66 (447)
T KOG4497|consen   16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFL----------------------------CLDKIVYIEWKADSCHILCV   66 (447)
T ss_pred             ECCCCCeeeeeeee-EEEEeccchhhHHHHHH----------------------------HHHHhhheeeeccceeeeee
Confidence            48999999999875 67787876543322111                            13567888999887777888


Q ss_pred             EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~  364 (502)
                      ...++.|.+|++....-...+......+.+++|+|+|..+|.+...+-.|.+|.+.+....... -....+..++|+|++
T Consensus        67 ~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg  145 (447)
T KOG4497|consen   67 AYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDG  145 (447)
T ss_pred             eeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCC
Confidence            8999999999999998888898888999999999999889999999999999999987655422 234456889999998


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      . +.+..+.-.....+.+..-+      ....+..+...+-..+.+.|+|+| ..||         |||---.-  .+..
T Consensus       146 ~-f~ai~sRrDCkdyv~i~~c~------~W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~Ley--kv~a  206 (447)
T KOG4497|consen  146 Q-FCAILSRRDCKDYVQISSCK------AWILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVLEY--KVYA  206 (447)
T ss_pred             c-eeeeeecccHHHHHHHHhhH------HHHHHHhcCCCcccccCceECCCC-cEEE---------Eecchhhh--eeee
Confidence            7 44444432222222221100      023344555556678999999998 5554         56543222  1111


Q ss_pred             ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      .. ..-.+..++|+|.++ +|+.|+.|+.+||-+--+.+.+.+
T Consensus       207 Ye-~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~e  247 (447)
T KOG4497|consen  207 YE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGE  247 (447)
T ss_pred             ee-eccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhh
Confidence            11 123588899999999 599999999999988776665543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=2.8e-13  Score=126.98  Aligned_cols=257  Identities=19%  Similarity=0.231  Sum_probs=185.7

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILA  283 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~  283 (502)
                      |...|..|++|+.|..|.+||.......                          .....+|...|..-.|-|.. ...++
T Consensus       150 FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------------l~f~SGH~~NvfQaKFiP~s~d~ti~  203 (559)
T KOG1334|consen  150 FNQRGDVLASGSDDLQVVVWDWVSGSPK--------------------------LSFESGHCNNVFQAKFIPFSGDRTIV  203 (559)
T ss_pred             ecccCceeeccCccceEEeehhhccCcc--------------------------cccccccccchhhhhccCCCCCcCce
Confidence            3678999999999999999999753222                          22345899999888888862 34789


Q ss_pred             EEecCCcEEEEECCC-Cee--eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE---eecC---C
Q 010769          284 SASADKQVKIWDVAA-GKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAA---D  354 (502)
Q Consensus       284 sgs~Dg~v~vwd~~~-~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~---~  354 (502)
                      +++.||.|++=.+.. +.+  ...+..|.++|.-++.-|..+..|++++.|+.+.-+|+++........   ....   .
T Consensus       204 ~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~  283 (559)
T KOG1334|consen  204 TSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG  283 (559)
T ss_pred             eccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence            999999999987653 332  344567999999999999999999999999999999999876543222   1222   4


Q ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe------cCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      ...++.+|...+.|++|+.+..+++||.|........   .++..+.      ...-.|++++|+..+..+| ++..|-.
T Consensus       284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n---~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYnDe~  359 (559)
T KOG1334|consen  284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN---GVLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYNDED  359 (559)
T ss_pred             eeeEecCCCCccccccCChhhhhhhhcccchhhcccc---chhhhcCCccccccCcccceeEEecCCcccee-eeecccc
Confidence            6788999998889999999999999999976432211   1122222      2345799999998774444 4555677


Q ss_pred             EEEEECCCCCe----------eEE-EEecCCCC--CEEEEEE-cCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          429 VKLWDLSNNQP----------SCI-ASRNPKAG--AVFSVAF-SEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       429 i~vwd~~~~~~----------~~~-~~~~~~~~--~v~~~~~-spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      |++|.-..+.-          ..+ ..+.+|..  .|-.+-| -|...| +++|+.=|.|.||+-.+++.++-+-+.+
T Consensus       360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-VvSGSDCGhIFiW~K~t~eii~~MegDr  436 (559)
T KOG1334|consen  360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-VVSGSDCGHIFIWDKKTGEIIRFMEGDR  436 (559)
T ss_pred             eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-EEecCccceEEEEecchhHHHHHhhccc
Confidence            99995433211          111 12455543  4666665 577776 8888888999999999999887665554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.3e-12  Score=124.87  Aligned_cols=242  Identities=14%  Similarity=0.175  Sum_probs=161.8

Q ss_pred             CCCCCEE-EEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcc--cceeeEEecCCCCcEE
Q 010769          206 REKGNFM-AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLGLAWNKEFRNIL  282 (502)
Q Consensus       206 s~~~~~l-a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~l  282 (502)
                      +|+|+|+ |+|...+.|+|||+.....                             .+..|.  ..|.-.-++.+ -..+
T Consensus        60 s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------------KFERhlDae~V~feiLsDD-~SK~  109 (703)
T KOG2321|consen   60 SPDGQYLLATGTYKPQIKVYDLANLSL-----------------------------KFERHLDAEVVDFEILSDD-YSKS  109 (703)
T ss_pred             cCCCcEEEEecccCCceEEEEccccee-----------------------------eeeecccccceeEEEeccc-hhhh
Confidence            8999875 7889999999999974221                             222332  33444444444 3344


Q ss_pred             EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769          283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p  362 (502)
                      +.-..|.+|-+... .|.- ..++ -...-..++++.-. .-|++++....|+-+++..+.....+....+.+++|..++
T Consensus       110 v~L~~DR~IefHak-~G~h-y~~R-IP~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~  185 (703)
T KOG2321|consen  110 VFLQNDRTIEFHAK-YGRH-YRTR-IPKFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE  185 (703)
T ss_pred             eEeecCceeeehhh-cCee-eeee-cCcCCccccccCCC-ccEEEeecCcceEEEEccccccccccccccccceeeeecC
Confidence            44556677765532 2211 1111 12233456666544 3355555667788899998887776666678899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC-----CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-----AVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      -.+ ++++|+.+|.|.+||.|........   .....+..|.+     .|+++.|+.+| -.+++|+..|.|.|||++..
T Consensus       186 ~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l---~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~  260 (703)
T KOG2321|consen  186 EHG-LLACGTEDGVVEFWDPRDKSRVGTL---DAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRAS  260 (703)
T ss_pred             ccc-eEEecccCceEEEecchhhhhheee---ecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccC
Confidence            654 8999999999999999986321111   11111223443     49999999987 89999999999999999999


Q ss_pred             CeeEEEEecCCCCCEEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCcccccc
Q 010769          438 QPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~spd~~-~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +|..+.. ++..-+|..+.|.+.+. -.|++ .....++|||-.+|+.....
T Consensus       261 ~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asi  310 (703)
T KOG2321|consen  261 KPLLVKD-HGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASI  310 (703)
T ss_pred             Cceeecc-cCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeec
Confidence            9755543 44567899999977632 13544 44568999999999876543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.52  E-value=1.1e-11  Score=109.41  Aligned_cols=244  Identities=15%  Similarity=0.130  Sum_probs=169.1

Q ss_pred             CCC-EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          208 KGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      +|. .|+.+-..|.|.++..+.......+.-+.                     ...-......++.|++. +..++++-
T Consensus        83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls---------------------~~ki~~~~~lslD~~~~-~~~i~vs~  140 (339)
T KOG0280|consen   83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS---------------------SKKISVVEALSLDISTS-GTKIFVSD  140 (339)
T ss_pred             CccceeeeccccceEEEEeeccceeeeeecccc---------------------hhhhhheeeeEEEeecc-CceEEEEc
Confidence            455 56777778999999875322211110000                     00001114567889888 55788888


Q ss_pred             cCCcEEEEECCCCee--eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc--ceEeecCCeEEEEeCC
Q 010769          287 ADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDP  362 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~v~~~p  362 (502)
                      .+|.+.+-+......  ++..+.|.-.+....|+...++++++|+.|+.+..||+|.+....  ....|...|.++.-+|
T Consensus       141 s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~  220 (339)
T KOG0280|consen  141 SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSP  220 (339)
T ss_pred             CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCC
Confidence            889998666555543  347789999999999999998999999999999999999655322  1345788999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee--
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS--  440 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~--  440 (502)
                      ..+.++++|+-|-.|++||.|+.        .+|++.-. -.+.|..+.++|.-...|+.++.-+-.+|-++..+...  
T Consensus       221 ~~~~~I~TGsYDe~i~~~DtRnm--------~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~  291 (339)
T KOG0280|consen  221 PKPTYIATGSYDECIRVLDTRNM--------GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQ  291 (339)
T ss_pred             CCCceEEEeccccceeeeehhcc--------cCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchh
Confidence            88889999999999999999976        35555443 34889999999964333344444344888888766543  


Q ss_pred             -EEEEecCCCCCEEEEEEcCCCCcEEEEEe-CCCcEE-EEECCCCc
Q 010769          441 -CIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLE-IWDTLSDA  483 (502)
Q Consensus       441 -~~~~~~~~~~~v~~~~~spd~~~llasg~-~dg~i~-vwd~~~~~  483 (502)
                       .......|.+-+..-.|..... +|||++ .|..++ +|-..++.
T Consensus       292 ~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  292 IVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             eeeeccccccceeeccccccccc-eeeeeeccccceeeeeeeccCC
Confidence             3445566777777777855544 477754 466644 78766654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.47  E-value=1.8e-10  Score=102.95  Aligned_cols=234  Identities=14%  Similarity=0.187  Sum_probs=154.3

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEE-EecCC--
Q 010769          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-VGSME--  218 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la-~g~~d--  218 (502)
                      ..+++|+.+..-+++|...|    .+||..+.-.....  ..+++   .+  +.+.=+-      -..++|| +||..  
T Consensus         8 ~lsvs~NQD~ScFava~~~G----friyn~~P~ke~~~--r~~~~---~G--~~~veML------fR~N~laLVGGg~~p   70 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG----FRIYNCDPFKESAS--RQFID---GG--FKIVEML------FRSNYLALVGGGSRP   70 (346)
T ss_pred             eeEEEEccCCceEEEEecCc----eEEEecCchhhhhh--hcccc---Cc--hhhhhHh------hhhceEEEecCCCCC
Confidence            44589999999999998776    68888775322000  01111   11  1110000      1245554 44443  


Q ss_pred             ----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          219 ----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       219 ----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                          ..+.|||=....+                           . ..-....+|.++.+.++   .|+..- .+.|.||
T Consensus        71 ky~pNkviIWDD~k~~~---------------------------i-~el~f~~~I~~V~l~r~---riVvvl-~~~I~Vy  118 (346)
T KOG2111|consen   71 KYPPNKVIIWDDLKERC---------------------------I-IELSFNSEIKAVKLRRD---RIVVVL-ENKIYVY  118 (346)
T ss_pred             CCCCceEEEEecccCcE---------------------------E-EEEEeccceeeEEEcCC---eEEEEe-cCeEEEE
Confidence                4799999221110                           0 11135678999999987   454444 4789999


Q ss_pred             ECC-CCeeeEEeccCC--CCeEEEEEcCCCCcEEEE-EECCCcEEEEeCCCCCC--ccceEeecCCeEEEEeCCCCCCEE
Q 010769          295 DVA-AGKCNLTLEHHT--DKVQAVAWNHHSPQILLS-GSFDRSVVMKDARISTH--SGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       295 d~~-~~~~~~~~~~h~--~~v~~l~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l  368 (502)
                      ... +.+.++.+..-.  ..+.+++-+... .+|+. |-.-|.|.|-|+.....  ......|.+.|.|++.+.+|. ++
T Consensus       119 tF~~n~k~l~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~v  196 (346)
T KOG2111|consen  119 TFPDNPKLLHVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LV  196 (346)
T ss_pred             EcCCChhheeeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EE
Confidence            988 556666664322  234333333322 33333 45579999999987665  355678999999999999876 89


Q ss_pred             EEEeCCCe-EEEEECCCCCCCCCCCCCCccEEEec--CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          369 VVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       369 ~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      ++++..|+ |+|||..++         ..+..+..  ....|.+++|||+. .+||++|..|+|+||.++.
T Consensus       197 ATaStkGTLIRIFdt~~g---------~~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  197 ATASTKGTLIRIFDTEDG---------TLLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEeccCcEEEEEEEcCCC---------cEeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeec
Confidence            99999997 899999998         55555542  34579999999998 9999999999999999876

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.47  E-value=2e-12  Score=114.01  Aligned_cols=207  Identities=18%  Similarity=0.165  Sum_probs=149.5

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .+++.|       ++.+.-++++-.+|.+.+-+...+.                         .......+.|.-.++..
T Consensus       124 ~lslD~-------~~~~~~i~vs~s~G~~~~v~~t~~~-------------------------le~vq~wk~He~E~Wta  171 (339)
T KOG0280|consen  124 ALSLDI-------STSGTKIFVSDSRGSISGVYETEMV-------------------------LEKVQTWKVHEFEAWTA  171 (339)
T ss_pred             eeEEEe-------eccCceEEEEcCCCcEEEEecceee-------------------------eeecccccccceeeeee
Confidence            355666       6778889999999999854443211                         11222456899999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECC-CCeeeEE-eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe
Q 010769          273 AWNKEFRNILASASADKQVKIWDVA-AGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~-~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  350 (502)
                      .|+....+++++|+.|+.+.-||++ .++.+.. .+.|...|.++.-+|..+.++++|++|-.|++||.|+-..+.....
T Consensus       172 ~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~  251 (339)
T KOG0280|consen  172 KFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK  251 (339)
T ss_pred             ecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc
Confidence            9998888899999999999999998 3344444 4678999999999988889999999999999999997666655667


Q ss_pred             ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-CCcE
Q 010769          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMV  429 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~i  429 (502)
                      ..+.|..+.++|.....+++++.-.-.++.+........    .........|.+-+..-.|.... .+|+||+. |+.+
T Consensus       252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~----~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~  326 (339)
T KOG0280|consen  252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEF----QIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKI  326 (339)
T ss_pred             cccceEEEEecchhhhHHHHHHHhcCceEEEecccccch----heeeeccccccceeecccccccc-ceeeeeeccccce
Confidence            779999999999755455555555556777776653210    12344456677777777775543 67888764 5554


Q ss_pred             E-EEECCC
Q 010769          430 K-LWDLSN  436 (502)
Q Consensus       430 ~-vwd~~~  436 (502)
                      + +|-.-+
T Consensus       327 ~~~Wl~~t  334 (339)
T KOG0280|consen  327 RQLWLHIT  334 (339)
T ss_pred             eeeeeecc
Confidence            4 664333

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.7e-11  Score=121.78  Aligned_cols=208  Identities=13%  Similarity=0.097  Sum_probs=132.8

Q ss_pred             CCCCCEEEEecC---CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          206 REKGNFMAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       206 s~~~~~la~g~~---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +|+|+.|+..+.   ++.|.+|++.++...                            .+..+...+.+.+|+|++..++
T Consensus       210 SpDG~~lay~s~~~g~~~i~~~dl~~g~~~----------------------------~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        210 SPNRQEITYMSYANGRPRVYLLDLETGQRE----------------------------LVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             CCCCCEEEEEEecCCCCEEEEEECCCCcEE----------------------------EeecCCCcccCcEECCCCCEEE
Confidence            899999988764   468999999753210                            1123455677889999977666


Q ss_pred             EEEecCCc--EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-CCC--cEEEEeCCCCCCccceEeecCCeEE
Q 010769          283 ASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDR--SVVMKDARISTHSGFKWAVAADVES  357 (502)
Q Consensus       283 ~sgs~Dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~  357 (502)
                      ++.+.++.  |.+||+.++.. ..+..+........|+|++ +.|+..+ .+|  .|.++|+..+.... .......+..
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~  338 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYST  338 (435)
T ss_pred             EEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccC
Confidence            67777665  77779887765 4455566667789999999 5555444 444  57788876654433 2223455677


Q ss_pred             EEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-C-----CcE
Q 010769          358 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-D-----KMV  429 (502)
Q Consensus       358 v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-d-----g~i  429 (502)
                      ..|+|++..++++....+  .|.+||+...          ....+. ....+..+.|+|+| ++|+..+. .     ..+
T Consensus       339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~----------~~~~lt-~~~~~~~p~~spDG-~~i~~~~~~~~~~~~~~L  406 (435)
T PRK05137        339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGS----------GERILT-SGFLVEGPTWAPNG-RVIMFFRQTPGSGGAPKL  406 (435)
T ss_pred             eEECCCCCEEEEEEcCCCceEEEEEECCCC----------ceEecc-CCCCCCCCeECCCC-CEEEEEEccCCCCCcceE
Confidence            899999885555543333  5788887543          112222 22346788999998 55554333 2     257


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      .++++......   .+. ..+.+...+|+|-
T Consensus       407 ~~~dl~g~~~~---~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        407 YTVDLTGRNER---EVP-TPGDASDPAWSPL  433 (435)
T ss_pred             EEEECCCCceE---Ecc-CCCCccCcccCCC
Confidence            88888766532   222 2344667778763

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.6e-11  Score=121.45  Aligned_cols=211  Identities=13%  Similarity=0.076  Sum_probs=126.6

Q ss_pred             CCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcE
Q 010769          205 DREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       205 ~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      |+|+|+.|+..+..   ..|.+||+.++...                            .+......+.+.+|+|++..+
T Consensus       203 wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----------------------------~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        203 WSPDGTKLAYVSFESKKPVVYVHDLATGRRR----------------------------VVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             EcCCCCEEEEEEccCCCcEEEEEECCCCCEE----------------------------EeecCCCCccceEECCCCCEE
Confidence            38999999887643   46999999753211                            011122345688999997655


Q ss_pred             EEEEecCCcEEEEEC--CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC--CCCCccceEeecCCeEE
Q 010769          282 LASASADKQVKIWDV--AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--ISTHSGFKWAVAADVES  357 (502)
Q Consensus       282 l~sgs~Dg~v~vwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~  357 (502)
                      +++.+.+|...||.+  ..+. ...+..+........|+|+|..+++++...|...+|.+.  ++.... ..........
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~  332 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTS  332 (427)
T ss_pred             EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCc
Confidence            567788887666654  4443 455655666667889999994444454445666777654  332222 1112233456


Q ss_pred             EEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-CCc--EEEE
Q 010769          358 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKM--VKLW  432 (502)
Q Consensus       358 v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~--i~vw  432 (502)
                      .+|+|++..+++++...+  .|.+||+.++.          ...+. .........|+|++ ++|+.++. .|.  +.+.
T Consensus       333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~----------~~~lt-~~~~~~~p~~spdg-~~l~~~~~~~g~~~l~~~  400 (427)
T PRK02889        333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQ----------VTALT-DTTRDESPSFAPNG-RYILYATQQGGRSVLAAV  400 (427)
T ss_pred             eEECCCCCEEEEEEccCCcEEEEEEECCCCC----------eEEcc-CCCCccCceECCCC-CEEEEEEecCCCEEEEEE
Confidence            789999875444443333  69999998752          12222 22334678999999 55555443 433  5555


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ++. +.  ....+..+.+.+...+|+|-
T Consensus       401 ~~~-g~--~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        401 SSD-GR--IKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ECC-CC--ceEEeecCCCCCCCCccCCC
Confidence            664 33  22333345566777888874

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.44  E-value=1.3e-11  Score=118.82  Aligned_cols=189  Identities=13%  Similarity=0.189  Sum_probs=156.3

Q ss_pred             CCcEEEEEecCCcEEEEECCCCeeeEEec---cCCCCeEEEEEc------C-------------CCCcEEEEEECCCcEE
Q 010769          278 FRNILASASADKQVKIWDVAAGKCNLTLE---HHTDKVQAVAWN------H-------------HSPQILLSGSFDRSVV  335 (502)
Q Consensus       278 ~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~---~h~~~v~~l~~~------~-------------~~~~~l~s~~~dg~i~  335 (502)
                      ...++|....||.+++|+...++....|.   .-++..++..|.      |             .+...++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            35689999999999999999988777663   234556666662      1             1335788889999999


Q ss_pred             EEeCCCCCCccceE--eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEc
Q 010769          336 MKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN  413 (502)
Q Consensus       336 vwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  413 (502)
                      +|++..++......  .|.+.|.++.|+.... .|++++.|+.+..|+....         ............+.+++++
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~---------~~~~~~~~~~~~~~sl~is  153 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEK---------VIIRIWKEQKPLVSSLCIS  153 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccc---------eeeeeeccCCCccceEEEc
Confidence            99999887665443  5788999999988755 8999999999999999886         6677777888889999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCC-----CCcEEEEEeCCCcEEEEECCC
Q 010769          414 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED-----SPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       414 p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd-----~~~llasg~~dg~i~vwd~~~  481 (502)
                      |++ .+|++++  ++|++||+.+.+  .+..+.+|.++|.+++|.-.     |.|+|.+......+.+|-+..
T Consensus       154 ~D~-~~l~~as--~~ik~~~~~~ke--vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  154 PDG-KILLTAS--RQIKVLDIETKE--VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCC-CEEEecc--ceEEEEEccCce--EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            997 8898887  479999999998  68899999999999999877     788888888888899998865

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.44  E-value=1.1e-11  Score=109.48  Aligned_cols=152  Identities=18%  Similarity=0.331  Sum_probs=102.4

Q ss_pred             eeEEecCCCCcEEEEEec---------CCcEEEEECCC-CeeeEEecc-CCCCeEEEEEcCCCCcEEEE-EECCCcEEEE
Q 010769          270 LGLAWNKEFRNILASASA---------DKQVKIWDVAA-GKCNLTLEH-HTDKVQAVAWNHHSPQILLS-GSFDRSVVMK  337 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~---------Dg~v~vwd~~~-~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s-~~~dg~i~vw  337 (502)
                      ..+.|+|.|..+++....         -+...||-++. +..+..+.. ..++|.+++|+|++..++++ |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            467899997666665552         13455665532 233444432 34579999999999554333 4467899999


Q ss_pred             eCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEe---CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769          338 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      |++. ..+  ..-....+..+.|+|+|. ++++++   ..|.|.+||+++.         ..+.... | ..++.++|+|
T Consensus        89 d~~~-~~i--~~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~---------~~i~~~~-~-~~~t~~~WsP  153 (194)
T PF08662_consen   89 DVKG-KKI--FSFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK---------KKISTFE-H-SDATDVEWSP  153 (194)
T ss_pred             cCcc-cEe--EeecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC---------EEeeccc-c-CcEEEEEEcC
Confidence            9972 222  222356788999999987 555543   3578999999965         4444433 3 3478999999


Q ss_pred             CCCCEEEEEeC------CCcEEEEECCCC
Q 010769          415 LVPNLLATGST------DKMVKLWDLSNN  437 (502)
Q Consensus       415 ~~~~~l~t~s~------dg~i~vwd~~~~  437 (502)
                      +| ++|++++.      |+.++||++...
T Consensus       154 dG-r~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  154 DG-RYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CC-CEEEEEEeccceeccccEEEEEecCe
Confidence            99 77777664      788999998643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=4.9e-11  Score=114.20  Aligned_cols=288  Identities=16%  Similarity=0.263  Sum_probs=179.8

Q ss_pred             ccccccccCCCceEEEEE-----ecCCcc--eeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEE
Q 010769          141 DLEDMTINPNDAVIVCAR-----NEDDVS--HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA  213 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~-----~~~~~~--~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la  213 (502)
                      .+.++.|+|-|++|.+=.     .++..+  .+.+|...+  ..  ..+.....      ..-.|   .+.|+.+..+.|
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~--~~s~~q~k------~Q~~W---~~qfs~dEsl~a  141 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET--GV--QRSQIQKK------MQNGW---VPQFSIDESLAA  141 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeecc--ce--ehhheehh------hhcCc---ccccccchhhhh
Confidence            688999999999997631     111111  344555443  20  00111111      12234   244577766544


Q ss_pred             EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC-cEEEE-----Eec
Q 010769          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-NILAS-----ASA  287 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s-----gs~  287 (502)
                      -- ..+.+.+|++.......                          ..  -|...|+.+.++|... ..+|+     ++.
T Consensus       142 rl-v~nev~f~~~~~f~~~~--------------------------~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGa  192 (566)
T KOG2315|consen  142 RL-VSNEVQFYDLGSFKTIQ--------------------------HK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGA  192 (566)
T ss_pred             hh-hcceEEEEecCCcccee--------------------------ee--eeccceeeEEecCCCCCceEEEEccCCCCC
Confidence            33 34789999987522111                          11  2567899999998733 34443     356


Q ss_pred             CCcEEEEECCCCee-----eEEeccCCCCeEEEEEcCCCCcEEEEEEC--C---------CcEEEEeCCCCCCccceEee
Q 010769          288 DKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHHSPQILLSGSF--D---------RSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       288 Dg~v~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--d---------g~i~vwd~~~~~~~~~~~~~  351 (502)
                      -+.|+||.+.....     .++|  ....-..+.|++.|..+|+.++.  |         .++++.++.... .......
T Consensus       193 Pa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-~~V~L~k  269 (566)
T KOG2315|consen  193 PASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-VSVPLLK  269 (566)
T ss_pred             CcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-EEEecCC
Confidence            67899998763221     1222  12233457899988666665543  2         367788877322 3334455


Q ss_pred             cCCeEEEEeCCCCCCE-EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC---CC
Q 010769          352 AADVESLAWDPHAEHS-FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DK  427 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~---dg  427 (502)
                      .++|.++.|+|.+..+ ++.|..-..+.|||++.          .+++.+  ..++-+++-|+|.| ++|+.+|.   -|
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----------~~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G  336 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----------KPVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPG  336 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCC----------CEeEeC--CCCCccceEECCCC-CEEEEeecCCCCC
Confidence            7899999999987643 33466788999999984          455544  46777899999999 78777776   47


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC-----CCcEEEEECCCCcccccccc
Q 010769          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS-----KGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~-----dg~i~vwd~~~~~~~~~~~~  490 (502)
                      .|-|||+.+.+  ++..+...  .-+-+.|+|||+|+|.+...     |+.++||+......-.+.|.
T Consensus       337 ~mEvwDv~n~K--~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~  400 (566)
T KOG2315|consen  337 DMEVWDVPNRK--LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFK  400 (566)
T ss_pred             ceEEEeccchh--hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhh
Confidence            89999999866  55555543  34558999999985554444     67899999965443333333

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.41  E-value=9.9e-11  Score=117.59  Aligned_cols=199  Identities=18%  Similarity=0.181  Sum_probs=129.7

Q ss_pred             CcccceeeEEecCCCCcEEEEEecC---CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEe
Q 010769          264 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD  338 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~D---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd  338 (502)
                      .+...+.+.+|+|++. +|+.++..   ..|++|++.+++... +..+...+.+++|+|++..++++.+.++  .|++|+
T Consensus       187 ~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       187 RSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             cCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence            3556788999999955 56655543   479999999886543 3335566778999999955555665554  588889


Q ss_pred             CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      +.++.... ...+........|+|++..+++++...+  .|+++++.+.          ....+..+...+..+.|+|++
T Consensus       265 ~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~----------~~~~l~~~~~~~~~~~~spdg  333 (417)
T TIGR02800       265 LDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG----------EVRRLTFRGGYNASPSWSPDG  333 (417)
T ss_pred             CCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC----------CEEEeecCCCCccCeEECCCC
Confidence            87765332 2223334456789998875555555444  5777777654          233444455667888999998


Q ss_pred             CCEEEEEeCCC---cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC--cEEEEECC
Q 010769          417 PNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDTL  480 (502)
Q Consensus       417 ~~~l~t~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg--~i~vwd~~  480 (502)
                       .+|+.++.++   .|.+||+.++....+..   . .......|+|++++++++...++  .+++.+..
T Consensus       334 -~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~---~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       334 -DLIAFVHREGGGFNIAVMDLDGGGERVLTD---T-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             -CEEEEEEccCCceEEEEEeCCCCCeEEccC---C-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence             7777776665   78999998865322221   1 22445689999997655555444  35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.40  E-value=3.8e-11  Score=108.23  Aligned_cols=250  Identities=15%  Similarity=0.239  Sum_probs=171.9

Q ss_pred             CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769          135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~  214 (502)
                      -+.|.+.|++...-|...-+..++.+.   +++||.-......-+.  .+|.  .|..+.++.+       .+....|++
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~dr---tvrv~lkrds~q~wps--I~~~--mP~~~~~~~y-------~~e~~~L~v   85 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDR---TVRVWLKRDSGQYWPS--IYHY--MPSPCSAMEY-------VSESRRLYV   85 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccc---eeeeEEeccccccCch--hhhh--CCCCceEeee-------eccceEEEE
Confidence            355778899999999999999998776   6788876555433233  3343  3455566655       577889999


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      |-..|++.-+.+...-                       .+.........|...|..+-|+-. ...+++.+.|..+.--
T Consensus        86 g~~ngtvtefs~sedf-----------------------nkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~h  141 (404)
T KOG1409|consen   86 GQDNGTVTEFALSEDF-----------------------NKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWH  141 (404)
T ss_pred             EEecceEEEEEhhhhh-----------------------hhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEE
Confidence            9999999888774210                       112222334479999999999877 5688899998766544


Q ss_pred             ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC--CCccceEeecCCeEEEEeCCCCCCEEEEEe
Q 010769          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFKWAVAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  372 (502)
                      -.+.+..+..+.. ....+++.+.-   .+...|...|.|.+..+...  ..+..+.+|.+.+.+++|.|. +.++++|.
T Consensus       142 c~e~~~~lg~Y~~-~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~  216 (404)
T KOG1409|consen  142 CTESGNRLGGYNF-ETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGA  216 (404)
T ss_pred             eeccCCcccceEe-eccCCCCceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEecc
Confidence            4444443332211 11111111111   13445555666655544332  334445578889999999996 45899999


Q ss_pred             CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      .|..+.+||+.-.        ......+.+|...|..+...+.- +.|.+++.||.|.+|+++.
T Consensus       217 ~d~~vi~wdigg~--------~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  217 SDHSVIMWDIGGR--------KGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ccCceEEEeccCC--------cceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccc
Confidence            9999999999876        35667788999999999988876 8899999999999999865

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=2.3e-10  Score=115.00  Aligned_cols=206  Identities=13%  Similarity=0.107  Sum_probs=125.4

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc--EEEEeC
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDA  339 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~vwd~  339 (502)
                      .+...+.+..|+|++..++++...++  .|.+||+.+++... +...........|+|+|..++++.+.+|.  |.++|+
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            35567889999999654444433333  58889998876432 22223344578999999556666777775  777788


Q ss_pred             CCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe--EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769          340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      .++.... ...+.......+|+|++..+++++..+|.  |+++|+.++         . ...+..+.......+|+|+| 
T Consensus       294 ~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---------~-~~~Lt~~g~~~~~~~~SpDG-  361 (448)
T PRK04792        294 ATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---------K-VSRLTFEGEQNLGGSITPDG-  361 (448)
T ss_pred             CCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C-EEEEecCCCCCcCeeECCCC-
Confidence            7665432 22334456778999998866666655554  556666654         1 22222222334557899998 


Q ss_pred             CEEEEEe-CCC--cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCccccc
Q 010769          418 NLLATGS-TDK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAGISN  487 (502)
Q Consensus       418 ~~l~t~s-~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~--i~vwd~~~~~~~~~  487 (502)
                      ++|+..+ ..+  .|.++|+.+++...+..   . .......|+|+|++++.+...+|.  ++++++ ++...+.
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~---~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~  431 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDLETGAMQVLTS---T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR  431 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCCCCeEEccC---C-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence            5555444 344  35667888776433221   1 122345799999976666665554  667776 3444333

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.38  E-value=4.8e-10  Score=106.23  Aligned_cols=308  Identities=13%  Similarity=0.125  Sum_probs=193.2

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      ....+..+++||.|.+|++....+    +++|-......   .+...|.        .+..    +.|||.++||.+-+.
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~----V~~~~g~~~~~---l~~~~~~--------~V~~----~~fSP~~kYL~tw~~   91 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG----VECWGGPSKAK---LVRFRHP--------DVKY----LDFSPNEKYLVTWSR   91 (561)
T ss_pred             cCcchhheeecCcchheehhhccc----eEEccccchhh---eeeeecC--------Ccee----cccCcccceeeeecc
Confidence            456789999999999999998775    67776654432   2222221        1122    344899999999776


Q ss_pred             CCc---------------EEEeeCCCCCCCCceeeeCCcchhh-hhhcc-------------------ccCCcccccccc
Q 010769          218 EPA---------------IEIWDLDVIDEVQPHVILGGIDEEK-KKKKS-------------------KKGKKSSIKYKK  262 (502)
Q Consensus       218 dg~---------------I~iwdl~~~~~~~~~~~l~~~~~~~-~~~~~-------------------~~~~~~~~~~~~  262 (502)
                      .+.               +.|||..++..+..+......-... -.+..                   ...-.......+
T Consensus        92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l  171 (561)
T COG5354          92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL  171 (561)
T ss_pred             CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhc
Confidence            655               8999998877665543332220000 00000                   000000000011


Q ss_pred             CCcccceeeEEecCCCCc-EEEE-----EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-------
Q 010769          263 GSHTDSVLGLAWNKEFRN-ILAS-----ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-------  329 (502)
Q Consensus       263 ~~h~~~V~~l~~~~~~~~-~l~s-----gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-------  329 (502)
                        ....|+..+|+|.+.+ .||.     ....+++++|.+..++.+.+-......-..+.|++.|..+|+-.-       
T Consensus       172 --r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnK  249 (561)
T COG5354         172 --RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNK  249 (561)
T ss_pred             --cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccc
Confidence              1256778888887322 3333     466789999999877766554433444457899999843333211       


Q ss_pred             ---CCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEE-eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC
Q 010769          330 ---FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK  405 (502)
Q Consensus       330 ---~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~  405 (502)
                         ....+.|++++....... ....++|...+|.|.+..+.++. .....+.++|++..          .  .+.....
T Consensus       250 syfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------l--~~~~Pe~  316 (561)
T COG5354         250 SYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------L--RFYFPEQ  316 (561)
T ss_pred             ceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc----------e--EEecCCc
Confidence               125688888886555442 36688999999999887654444 68889999999853          2  2333445


Q ss_pred             CeeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe-----CCCcEEEE
Q 010769          406 AVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-----SKGKLEIW  477 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~-----~dg~i~vw  477 (502)
                      .=..+.|+|.+ ++++.++.+   |.+-+||..... .++..+.+.  ...-+.|+|+++|++....     .|..|+||
T Consensus       317 ~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf-~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~  392 (561)
T COG5354         317 KRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRF-KVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLW  392 (561)
T ss_pred             ccccccccCcc-cEEEEecCCccccceEEeccCCce-EEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEE
Confidence            55778899998 888887765   679999987654 344344433  3455789999997544332     36689999


Q ss_pred             ECCCCc
Q 010769          478 DTLSDA  483 (502)
Q Consensus       478 d~~~~~  483 (502)
                      ++....
T Consensus       393 ~v~g~~  398 (561)
T COG5354         393 DVYGAK  398 (561)
T ss_pred             EecCch
Confidence            996544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=2.6e-10  Score=114.79  Aligned_cols=200  Identities=13%  Similarity=0.122  Sum_probs=126.1

Q ss_pred             CcccceeeEEecCCCCcEEEEEecC---CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEe
Q 010769          264 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD  338 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~D---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd  338 (502)
                      .+...+...+|+|++. .|+..+..   ..|.+|++.+++... +....+.+....|+|+|..++++.+.+|  .|.+||
T Consensus       196 ~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        196 QSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             cCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence            4567789999999965 55554433   369999998886533 3333445567899999955555666665  588889


Q ss_pred             CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      +.++.... ............|+|++..+++++..+|  .|+++++.++         . ...+...........|+|++
T Consensus       274 ~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g---------~-~~~lt~~~~~~~~~~~Spdg  342 (430)
T PRK00178        274 LASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG---------R-AERVTFVGNYNARPRLSADG  342 (430)
T ss_pred             CCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC---------C-EEEeecCCCCccceEECCCC
Confidence            88765432 2333445667889999886666655554  4666777654         1 12222122334567899998


Q ss_pred             CCEEEEEeC-CC--cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC--cEEEEECCC
Q 010769          417 PNLLATGST-DK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDTLS  481 (502)
Q Consensus       417 ~~~l~t~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg--~i~vwd~~~  481 (502)
                       +.|+..+. ++  .|.+||+.++....+.. .   .......|+|+|++++.+....|  .|.++++..
T Consensus       343 -~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        343 -KTLVMVHRQDGNFHVAAQDLQRGSVRILTD-T---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             -CEEEEEEccCCceEEEEEECCCCCEEEccC-C---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence             56655543 33  48889998877433322 1   12235689999997666655444  466667643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.37  E-value=1.5e-09  Score=105.48  Aligned_cols=286  Identities=13%  Similarity=0.176  Sum_probs=169.2

Q ss_pred             ccccccccCCCceEEEEEecC-CcceeEEEEEecCCCCCCceeeeeccc-cCCCcceeeeecCCCCCCCCCCEEEEecC-
Q 010769          141 DLEDMTINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAVGSM-  217 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~-~~~~l~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~~s~~~~~la~g~~-  217 (502)
                      .-.-++++|++++|.++.... ....+..|.++...+   .|....... ...-|..+..       +|++++|+++.. 
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g---~L~~~~~~~~~g~~p~~i~~-------~~~g~~l~vany~  107 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG---TLTLLNSVPSGGSSPCHIAV-------DPDGRFLYVANYG  107 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT---EEEEEEEEEESSSCEEEEEE-------CTTSSEEEEEETT
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc---eeEEeeeeccCCCCcEEEEE-------ecCCCEEEEEEcc
Confidence            446788999999999987653 445777777776644   444433333 2333333332       789999998875 


Q ss_pred             CCcEEEeeCCCCCCCCcee-eeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          218 EPAIEIWDLDVIDEVQPHV-ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      +|.|.+++++....+.... +..-           .......   .........++.|+|+++.++++.-....|.+|++
T Consensus       108 ~g~v~v~~l~~~g~l~~~~~~~~~-----------~g~g~~~---~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~  173 (345)
T PF10282_consen  108 GGSVSVFPLDDDGSLGEVVQTVRH-----------EGSGPNP---DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI  173 (345)
T ss_dssp             TTEEEEEEECTTSEEEEEEEEEES-----------EEEESST---TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEEccCCcccceeeeeccc-----------CCCCCcc---cccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence            7999999997532222110 0000           0000000   01123446789999996655555545568999999


Q ss_pred             CCCe--e--eEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc-cceE--e-------ecCCeEEEEeC
Q 010769          297 AAGK--C--NLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKW--A-------VAADVESLAWD  361 (502)
Q Consensus       297 ~~~~--~--~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~--~-------~~~~v~~v~~~  361 (502)
                      ....  .  ...+. ........+.|+|++..++++.-.++.|.++++...... ....  .       .......++++
T Consensus       174 ~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is  253 (345)
T PF10282_consen  174 DDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS  253 (345)
T ss_dssp             -TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred             eCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence            7654  2  12222 234568899999999566667777899999998832211 1111  0       11257789999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEEC--CCCC
Q 010769          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDL--SNNQ  438 (502)
Q Consensus       362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~--~~~~  438 (502)
                      |++..++++....+.|.+|++......     ...+..+.........++++|++ ++|+++. .++.|.+|++  .++.
T Consensus       254 pdg~~lyvsnr~~~sI~vf~~d~~~g~-----l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG~  327 (345)
T PF10282_consen  254 PDGRFLYVSNRGSNSISVFDLDPATGT-----LTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTGK  327 (345)
T ss_dssp             TTSSEEEEEECTTTEEEEEEECTTTTT-----EEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTE
T ss_pred             cCCCEEEEEeccCCEEEEEEEecCCCc-----eEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCCc
Confidence            998866666677889999999432100     13344444445568999999999 6665555 6778999976  4555


Q ss_pred             eeEEEEecCCCCCEEEEEE
Q 010769          439 PSCIASRNPKAGAVFSVAF  457 (502)
Q Consensus       439 ~~~~~~~~~~~~~v~~~~~  457 (502)
                      +...... .......||.|
T Consensus       328 l~~~~~~-~~~~~p~ci~f  345 (345)
T PF10282_consen  328 LTPVGSS-VPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEEE-EESSSEEEEEE
T ss_pred             EEEeccc-ccCCCCEEEeC
Confidence            4333322 22344666665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=5.4e-10  Score=111.44  Aligned_cols=206  Identities=10%  Similarity=0.058  Sum_probs=125.8

Q ss_pred             ccceeeEEecCCCCc--EEEEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC----cEEEE
Q 010769          266 TDSVLGLAWNKEFRN--ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMK  337 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~--~l~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg----~i~vw  337 (502)
                      ...+.+-+|+|+|..  ++++...+|  .|.+.++.+++... +....+......|+|+|..++++....|    .+.+|
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~  262 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF  262 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence            345667799999765  333444444  57778888775433 2223445567899999955554443333    34446


Q ss_pred             eCCCCC--CccceEee-cCCeEEEEeCCCCCCEEEEEeCCCeEEEEE--CCCCCCCCCCCCCCccEEEecCCCCeeEEEE
Q 010769          338 DARIST--HSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFD--IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY  412 (502)
Q Consensus       338 d~~~~~--~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  412 (502)
                      ++..+.  ........ .......+|+|+|..+++++..+|...+|.  +...        ......+..+...+....|
T Consensus       263 ~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~--------g~~~~~lt~~~~~~~~p~w  334 (428)
T PRK01029        263 SLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE--------GQSPRLLTKKYRNSSCPAW  334 (428)
T ss_pred             ecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc--------ccceEEeccCCCCccceeE
Confidence            766431  11112221 233467899999886666666677555554  4321        1223344445566788999


Q ss_pred             cCCCCCEEEEEeC-C--CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCcc
Q 010769          413 NPLVPNLLATGST-D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAG  484 (502)
Q Consensus       413 sp~~~~~l~t~s~-d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d--g~i~vwd~~~~~~  484 (502)
                      +|+| +.|+..+. +  ..|.+||+.+++...+.   .....+....|+|||+++++++...  ..|++|++.+++.
T Consensus       335 SPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt---~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        335 SPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLT---TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             CCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEcc---CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            9999 65655443 3  36999999988743332   2234567899999999766555443  4688889877654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.36  E-value=3e-10  Score=110.45  Aligned_cols=196  Identities=16%  Similarity=0.198  Sum_probs=140.7

Q ss_pred             cEE-EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEE
Q 010769          280 NIL-ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       280 ~~l-~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      +++ ++-..++.|.|.|..+.+.+..+.........+.++|++ +++++++.||.|.++|+.+.+... ..........+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~-~i~~G~~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVA-TIKVGGNPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEE-EEE-SSEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEE-EEecCCCcceE
Confidence            455 455668999999999999999997655545567899999 788888999999999999988655 45666778999


Q ss_pred             EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-------CCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       359 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      +++++|..++++....+.+.++|.++.         +++..+...       ...+.++..+|..+.++++.-.-+.|.+
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tl---------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~v  154 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETL---------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWV  154 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT-----------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccc---------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEE
Confidence            999999866666678999999999987         666666543       3467888888887456666666688988


Q ss_pred             EECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      .|....++....... .........|+|+++|++++......|-++|+.+++.+..
T Consensus       155 Vdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  155 VDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             EETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEeccccccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence            898877654443433 3456788999999999888777788999999999877654

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.35  E-value=2.7e-10  Score=109.95  Aligned_cols=194  Identities=19%  Similarity=0.249  Sum_probs=149.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec------C---
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN------K---  276 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~------~---  276 (502)
                      +|.+.|+|..+.||.++||+.........+....                        .-++..+++.|.      |   
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~------------------------~~s~t~~~~~w~L~~~~s~~k~   57 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA------------------------SLSGTCTYTKWGLSADYSPMKW   57 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccch------------------------hccCcceeEEEEEEeccchHHH
Confidence            4568899999999999999987644322211110                        111222333331      1   


Q ss_pred             ----------CCCcEEEEEecCCcEEEEECCCCeeeEEec--cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          277 ----------EFRNILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       277 ----------~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                                .+...++-|...|.|.+|++..++....+.  .|.+.|.++.|+.+- ..|.+++.|+.+..|+......
T Consensus        58 ~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~  136 (541)
T KOG4547|consen   58 LSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI  136 (541)
T ss_pred             HhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEeccccee
Confidence                      123478888999999999999999888874  689999999999887 7899999999999999999888


Q ss_pred             ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC-----CCCE
Q 010769          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL-----VPNL  419 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-----~~~~  419 (502)
                      ....+.....+.+++.+|++. .+++++  +.|++||+.+.         +.+..+.+|.++|++++|.-.     |..+
T Consensus       137 ~~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~~~g~~G~~v  204 (541)
T KOG4547|consen  137 IRIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTLIDGIIGKYV  204 (541)
T ss_pred             eeeeccCCCccceEEEcCCCC-EEEecc--ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEecccccccee
Confidence            876667778899999999966 666654  78999999997         889999999999999999876     5455


Q ss_pred             EEEEeCCCcEEEEECCC
Q 010769          420 LATGSTDKMVKLWDLSN  436 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~  436 (502)
                      |.+...+..+.+|-+..
T Consensus       205 Lssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  205 LSSAAAERGITVWVVEK  221 (541)
T ss_pred             eeccccccceeEEEEEc
Confidence            66666677788886654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.34  E-value=5.2e-10  Score=112.37  Aligned_cols=190  Identities=17%  Similarity=0.163  Sum_probs=116.8

Q ss_pred             CCCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCc
Q 010769          204 KDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  280 (502)
Q Consensus       204 ~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  280 (502)
                      .|+|+|++||.++..   ..|++|++.++...                            .+..+...+.+++|+|++..
T Consensus       196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----------------------------~~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----------------------------KVASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----------------------------EeecCCCCccceEECCCCCE
Confidence            348999999987654   47999998753210                            11123455667899999665


Q ss_pred             EEEEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEeCCCCCCccceEeecCCeE
Q 010769          281 ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADVE  356 (502)
Q Consensus       281 ~l~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~  356 (502)
                      ++++.+.++  .|.+|++.+++.. .+..+........|+|++..+++++...+  .|.++++.+..... .........
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~  325 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNA  325 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCcc
Confidence            656666555  5888998877543 34445555567899999944444444444  57777877654322 222345567


Q ss_pred             EEEeCCCCCCEEEEEeCCC---eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC---cEE
Q 010769          357 SLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---MVK  430 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg---~i~  430 (502)
                      .+.|+|++. +++.+..++   .|.+||+.+..          ...+.. ........|+|++ ++|+..+.++   .++
T Consensus       326 ~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~----------~~~l~~-~~~~~~p~~spdg-~~l~~~~~~~~~~~l~  392 (417)
T TIGR02800       326 SPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG----------ERVLTD-TGLDESPSFAPNG-RMILYATTRGGRGVLG  392 (417)
T ss_pred             CeEECCCCC-EEEEEEccCCceEEEEEeCCCCC----------eEEccC-CCCCCCceECCCC-CEEEEEEeCCCcEEEE
Confidence            889999887 455555444   78888887641          122221 2234556899998 5555555443   355


Q ss_pred             EEECCC
Q 010769          431 LWDLSN  436 (502)
Q Consensus       431 vwd~~~  436 (502)
                      +.+...
T Consensus       393 ~~~~~g  398 (417)
T TIGR02800       393 LVSTDG  398 (417)
T ss_pred             EEECCC
Confidence            555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.5e-08  Score=92.83  Aligned_cols=279  Identities=11%  Similarity=0.177  Sum_probs=177.8

Q ss_pred             eeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCc
Q 010769          165 HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGI  241 (502)
Q Consensus       165 ~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~  241 (502)
                      .+.+|.++...+   .+..-.......-|.-++|       +|++++|.++..+   |.|.-|.++..+....  .+.  
T Consensus        17 gI~v~~ld~~~g---~l~~~~~v~~~~nptyl~~-------~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--~ln--   82 (346)
T COG2706          17 GIYVFNLDTKTG---ELSLLQLVAELGNPTYLAV-------NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--FLN--   82 (346)
T ss_pred             ceEEEEEeCccc---ccchhhhccccCCCceEEE-------CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--Eee--
Confidence            567788876665   4443333334445566666       7899888887554   7888888874321111  000  


Q ss_pred             chhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE-ecCCcEEEEECCC-CeeeE--EeccCCCC------
Q 010769          242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA-SADKQVKIWDVAA-GKCNL--TLEHHTDK------  311 (502)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg-s~Dg~v~vwd~~~-~~~~~--~~~~h~~~------  311 (502)
                                       .....+  .+-+.++++++++ +|+++ -..|.|.++-++. |....  .+..|.+.      
T Consensus        83 -----------------~~~~~g--~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ  142 (346)
T COG2706          83 -----------------RQTLPG--SPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ  142 (346)
T ss_pred             -----------------ccccCC--CCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc
Confidence                             001112  2238899999965 55555 4568999999865 43221  12235544      


Q ss_pred             ----eEEEEEcCCCCcEEEEEEC-CCcEEEEeCCCCCCccc---eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECC
Q 010769          312 ----VQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGF---KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  383 (502)
Q Consensus       312 ----v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~---~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~  383 (502)
                          +.+..+.|++ ++|++... --.|.+|++..+.....   ........+.+.|+|+++...+++=-+++|.+|...
T Consensus       143 ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         143 ESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             cCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence                8889999999 66666643 34689999986554321   224566789999999988555566679999999988


Q ss_pred             CCCCCCCCCCCCccEEEe------cCCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEECCC--CCeeEEEEecCCCCCEEE
Q 010769          384 TAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN--NQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~vwd~~~--~~~~~~~~~~~~~~~v~~  454 (502)
                      .....     ...+..+.      ........|.++|+| ++|+++.. ...|-+|.+..  ++...+.....+...-+.
T Consensus       222 ~~~g~-----~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~  295 (346)
T COG2706         222 PAVGK-----FEELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD  295 (346)
T ss_pred             CCCce-----EEEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc
Confidence            74110     01112111      123567889999999 77777654 44688887754  344444445555555789


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          455 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       455 ~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      +.|+|.+++|+|++-...+|.+|.+.....
T Consensus       296 F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG  325 (346)
T COG2706         296 FNINPSGRFLIAANQKSDNITVFERDKETG  325 (346)
T ss_pred             ceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence            999999998666665566899998865543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=1.3e-09  Score=109.58  Aligned_cols=213  Identities=14%  Similarity=0.086  Sum_probs=125.6

Q ss_pred             CCCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCc
Q 010769          204 KDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  280 (502)
Q Consensus       204 ~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  280 (502)
                      .|+|+|+.|+..+..   ..|.+||+.++...                         .....   .......+|+|++..
T Consensus       224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-------------------------~lt~~---~g~~~~~~wSPDG~~  275 (448)
T PRK04792        224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-------------------------KVTSF---PGINGAPRFSPDGKK  275 (448)
T ss_pred             eECCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EecCC---CCCcCCeeECCCCCE
Confidence            348999999876543   35888887643210                         00111   122346799999765


Q ss_pred             EEEEEecCCc--EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc--EEEEeCCCCCCccceEeecCCeE
Q 010769          281 ILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDARISTHSGFKWAVAADVE  356 (502)
Q Consensus       281 ~l~sgs~Dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~  356 (502)
                      ++++.+.+|.  |.+||+.+++. ..+..+........|+|++..+++++..++.  |.++|+.+++...... ......
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~  353 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQNL  353 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-CCCCCc
Confidence            6666777775  77788887764 3444455567788999999545555544444  5566776555332221 222334


Q ss_pred             EEEeCCCCCCEEEEEeCCCe--EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc--EEEE
Q 010769          357 SLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKLW  432 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~--i~vw  432 (502)
                      ..+|+|++..+++++..++.  |.++|+.++.          ...+... .......|+|++..++++...++.  ++++
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~----------~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~  422 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGA----------MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAV  422 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEEECCCCC----------eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence            57899998866666555554  5556766541          1222211 122345799999444555544544  6777


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      +.....   ...+..+.+.+...+|+|-
T Consensus       423 ~~~G~~---~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        423 SIDGRF---KARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             ECCCCc---eEECcCCCCCcCCCccCCC
Confidence            774433   3334444566777888873

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=1.4e-09  Score=109.53  Aligned_cols=211  Identities=14%  Similarity=0.133  Sum_probs=126.4

Q ss_pred             CCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcE
Q 010769          205 DREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       205 ~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      |+|+|+.|+..+.+   ..|.+|++.++...                         .   +....+.+...+|+|++..+
T Consensus       206 wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-------------------------~---l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        206 WSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-------------------------Q---ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             ECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-------------------------E---ccCCCCCcCCeEECCCCCEE
Confidence            38999999876544   46888898653211                         0   11122334568999996655


Q ss_pred             EEEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEeCCCCCCccceEeecCCeEE
Q 010769          282 LASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADVES  357 (502)
Q Consensus       282 l~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~  357 (502)
                      +++.+.+|  .|.+||+.+++.. .+..+........|+|++..++++...+|  .|.++++.++....... .......
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~  335 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR  335 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence            55666665  5888899887654 45555666777899999955555554444  46667776655332221 1223445


Q ss_pred             EEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-CCC--cEEEE
Q 010769          358 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDK--MVKLW  432 (502)
Q Consensus       358 v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg--~i~vw  432 (502)
                      ..|+|++..++++...++  .|.+||+.++.          ...+. +........|+|+| ++|+..+ ..+  .|.++
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~----------~~~lt-~~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~  403 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGS----------VRILT-DTSLDESPSVAPNG-TMLIYATRQQGRGVLMLV  403 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCC----------EEEcc-CCCCCCCceECCCC-CEEEEEEecCCceEEEEE
Confidence            789999885555554444  57888887652          11121 22223356899998 5555444 333  46677


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ++....   ...+..+.+.+...+|+|-
T Consensus       404 ~~~g~~---~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        404 SINGRV---RLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ECCCCc---eEECcCCCCCcCCCccCCC
Confidence            775443   2223334556777778763

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.31  E-value=9.6e-10  Score=112.63  Aligned_cols=202  Identities=14%  Similarity=0.173  Sum_probs=142.7

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      +.|....+.-....++.++..+     .+++++....   .+...-    ..--.|+-...+-..++++.-++++|+.-+
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~n-----s~~i~d~~~~---~~~~~i----~~~er~~l~~~~~~g~s~~~~~i~~gsv~~  155 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRN-----SLLIRDSKNS---SVLSKI----QSDERCTLYSSLIIGDSAEELYIASGSVFG  155 (967)
T ss_pred             ccccccchhhhcceEEEEEcCc-----eEEEEecccC---ceehhc----CCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence            3444455555667777777666     5555554443   222110    000011111111233477888999999999


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .|.+|+... +                          .+...+.+|.+.|.++.|+.+ +.+++++|.|.++++|.+.++
T Consensus       156 ~iivW~~~~-d--------------------------n~p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~  207 (967)
T KOG0974|consen  156 EIIVWKPHE-D--------------------------NKPIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSR  207 (967)
T ss_pred             cEEEEeccc-c--------------------------CCcceecccCCceEEEEEccC-CcEEEEEecCcceeeeecccc
Confidence            999999861 1                          111145689999999999999 569999999999999999998


Q ss_pred             eeeE-EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEE
Q 010769          300 KCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       300 ~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  378 (502)
                      +... +.-+|+..|..++|+|.   .+++++.|.++++|+................+..++..+.. ...++++.||.++
T Consensus       208 ~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk  283 (967)
T KOG0974|consen  208 EVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLK  283 (967)
T ss_pred             cccCcccccccceeEEEEeccc---eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchh
Confidence            7766 66789999999999996   79999999999999776554443233345568888888754 4788899999999


Q ss_pred             EEECCCC
Q 010769          379 GFDIRTA  385 (502)
Q Consensus       379 i~d~~~~  385 (502)
                      +|++...
T Consensus       284 ~~~l~~r  290 (967)
T KOG0974|consen  284 LWDLNGR  290 (967)
T ss_pred             hhhhhcc
Confidence            9987543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=3.5e-10  Score=115.76  Aligned_cols=192  Identities=13%  Similarity=0.175  Sum_probs=149.9

Q ss_pred             EEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCe-----EEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKV-----QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      ..+.-. ...++.++.++.+.+||...+.....+.. ...+     .-+.+++.. -++++|+.-+.|.+|+........
T Consensus        93 ~~l~~e-~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~  169 (967)
T KOG0974|consen   93 AKLFEE-NKKIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPI  169 (967)
T ss_pred             cchhhh-cceEEEEEcCceEEEEecccCceehhcCC-CceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCcc
Confidence            333334 34788888889999999988777666652 3222     122334554 789999999999999998555444


Q ss_pred             ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCC
Q 010769          347 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      ...+|.+.+.++.|+-++. ++++.++|.++++|++.+..        ......-+|+..|..+.|.|+   .++|++.|
T Consensus       170 ~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~--------~~~~~~fgHsaRvw~~~~~~n---~i~t~ged  237 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSRE--------VLGCTGFGHSARVWACCFLPN---RIITVGED  237 (967)
T ss_pred             eecccCCceEEEEEccCCc-EEEEEecCcceeeeeccccc--------ccCcccccccceeEEEEeccc---eeEEeccc
Confidence            5778999999999999876 89999999999999999873        333567789999999999984   89999999


Q ss_pred             CcEEEEECCCCCeeEEEEecCCC-CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          427 KMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      .+.++|+....+.   ..+..|. ..|+.++..+... +++|++.||.+++|++...
T Consensus       238 ctcrvW~~~~~~l---~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  238 CTCRVWGVNGTQL---EVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eEEEEEeccccee---hhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhcc
Confidence            9999997765542   2455553 4689999988887 6999999999999998653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=2.9e-09  Score=106.26  Aligned_cols=181  Identities=10%  Similarity=0.091  Sum_probs=106.5

Q ss_pred             ceeeEEecCCCCcEEEEEecCC----cEEEEECCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe--
Q 010769          268 SVLGLAWNKEFRNILASASADK----QVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD--  338 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg----~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd--  338 (502)
                      .....+|+|+|..++++...+|    .+.+|++..+   +.......+.......+|+|+|..++++...+|...+|.  
T Consensus       232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            3456799999665555543333    3445777653   333333333344567899999944455555567655554  


Q ss_pred             CCCC-CCccceEeecCCeEEEEeCCCCCCEEEEEeCC--CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          339 ARIS-THSGFKWAVAADVESLAWDPHAEHSFVVSLED--GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       339 ~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      +... ............+....|+|++..+++++..+  ..|.+||+.++.          ...+......+....|+|+
T Consensus       312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~----------~~~Lt~~~~~~~~p~wSpD  381 (428)
T PRK01029        312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR----------DYQLTTSPENKESPSWAID  381 (428)
T ss_pred             CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC----------eEEccCCCCCccceEECCC
Confidence            4321 11221222334567889999988655555444  368999998762          2233333345678999999


Q ss_pred             CCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCC
Q 010769          416 VPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS  461 (502)
Q Consensus       416 ~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~  461 (502)
                      |..+++++..  ...|++|++..++...+..   ..+.+...+|+|-.
T Consensus       382 G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~---~~g~~~~p~Ws~~~  426 (428)
T PRK01029        382 SLHLVYSAGNSNESELYLISLITKKTRKIVI---GSGEKRFPSWGAFP  426 (428)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCEEEeec---CCCcccCceecCCC
Confidence            8444444443  3568889998877433332   33556678888753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.27  E-value=7.3e-09  Score=113.68  Aligned_cols=260  Identities=13%  Similarity=0.147  Sum_probs=159.4

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      +++++++-+..+.|++|+.... .   ...+++....       ......   ....+-.....|++.+++..++++-..
T Consensus       579 ~g~lyVaDs~n~rI~v~d~~G~-~---i~~ig~~g~~-------G~~dG~---~~~a~f~~P~GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        579 NNRLFISDSNHNRIVVTDLDGN-F---IVQIGSTGEE-------GLRDGS---FEDATFNRPQGLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             CCeEEEEECCCCeEEEEeCCCC-E---EEEEccCCCc-------CCCCCc---hhccccCCCcEEEEeCCCCEEEEEeCC
Confidence            4667777778899999997532 1   1111110000       000000   001223446889999884434444455


Q ss_pred             CCcEEEEECCCCeeeEEeccC-----------------CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce--
Q 010769          288 DKQVKIWDVAAGKCNLTLEHH-----------------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--  348 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h-----------------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--  348 (502)
                      .+.|+++|+.++.. .++.+-                 -.....++++|++..++++.+.++.|++||...+......  
T Consensus       645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~  723 (1057)
T PLN02919        645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD  723 (1057)
T ss_pred             CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecC
Confidence            67899999877653 333110                 1234679999965478888888999999998765432100  


Q ss_pred             ------------EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC----CCCCCccEEEec--------CC
Q 010769          349 ------------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD----STSQQSSFTLHA--------HD  404 (502)
Q Consensus       349 ------------~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~--------h~  404 (502)
                                  ...-.....++++|++..++++-+.++.|++||+.++.....    .........+..        .-
T Consensus       724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l  803 (1057)
T PLN02919        724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL  803 (1057)
T ss_pred             CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence                        001123567999998876777778889999999886521000    000000011100        11


Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-----------CCCCCEEEEEEcCCCCcEEEEEeCCCc
Q 010769          405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-----------PKAGAVFSVAFSEDSPFVLAIGGSKGK  473 (502)
Q Consensus       405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-----------~~~~~v~~~~~spd~~~llasg~~dg~  473 (502)
                      ....+++++++| .++++-+.++.|++||..++....+....           ........++++++|+ ++++-+.++.
T Consensus       804 ~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~  881 (1057)
T PLN02919        804 QHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSL  881 (1057)
T ss_pred             cCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCE
Confidence            124588999988 78888888999999999887633222111           1122467899999998 7888888999


Q ss_pred             EEEEECCCCcc
Q 010769          474 LEIWDTLSDAG  484 (502)
Q Consensus       474 i~vwd~~~~~~  484 (502)
                      |++||+.++..
T Consensus       882 Irvid~~~~~~  892 (1057)
T PLN02919        882 IRYLDLNKGEA  892 (1057)
T ss_pred             EEEEECCCCcc
Confidence            99999998765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.27  E-value=2.1e-11  Score=130.27  Aligned_cols=201  Identities=14%  Similarity=0.185  Sum_probs=152.2

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  342 (502)
                      .|-..|.++.-+|. ..+.+||+.||.|++|....++.+..++ ..+..|+.+.|+.+| +.+..+..||.+.+|... +
T Consensus      2206 ~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             cccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC-C
Confidence            35577888888888 4578899999999999998888877773 344899999999999 788899999999999987 3


Q ss_pred             CCccceEeecCCeEEEEeCCCCCCEEEEE---eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCE
Q 010769          343 THSGFKWAVAADVESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       343 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                      +.......|......++|-.  . .+++.   +.++.+.+||.....        .....-..|.+.++++++.|.. .+
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~--------~~s~v~~~H~~gaT~l~~~P~~-ql 2350 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPP--------MNSLVHTCHDGGATVLAYAPKH-QL 2350 (2439)
T ss_pred             cceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCc--------ccceeeeecCCCceEEEEcCcc-eE
Confidence            33322334555666666654  2 34443   467899999987652        2222338899999999999987 99


Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      |++||.+|.|++||++..+.  ...++.         +. ... .+++|+..|.|+||++..-..+......+
T Consensus      2351 lisggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQL--RHTFQA---------LD-TRE-YFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             EEecCCcCcEEEeehHHHHH--HHHhhh---------hh-hhh-eeeccCcccceEEEEccccchhhcCchhh
Confidence            99999999999999998763  323221         44 334 58999999999999998887666554444

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=3.6e-09  Score=101.30  Aligned_cols=290  Identities=13%  Similarity=0.159  Sum_probs=184.2

Q ss_pred             ccccccccCCCceEEEEEecCCc--------ceeEEEEEecCCCCCCceeeeec--cccCCCcceeeeecCCCCCCCCCC
Q 010769          141 DLEDMTINPNDAVIVCARNEDDV--------SHLEVYILEESDGGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~--------~~l~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~w~~~~~~~s~~~~  210 (502)
                      .|.-+.|||..++|++-+..-..        ..|.||....+..    +...+.  ...+..|+ +.       ||.+++
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l----krsF~~~~~~~~~WP~-fr-------WS~DdK  318 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL----KRSFPVIKSPYLKWPI-FR-------WSHDDK  318 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch----hcceeccCCCccccce-EE-------eccCCc
Confidence            46778888999999887644322        4667776665542    112221  11111121 23       489999


Q ss_pred             EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec---
Q 010769          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA---  287 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~---  287 (502)
                      |+|.-+. ..|.||+......+.      +               +.      -.-..|...+|+|. +++||--.-   
T Consensus       319 y~Arm~~-~sisIyEtpsf~lld------~---------------Ks------lki~gIr~FswsP~-~~llAYwtpe~~  369 (698)
T KOG2314|consen  319 YFARMTG-NSISIYETPSFMLLD------K---------------KS------LKISGIRDFSWSPT-SNLLAYWTPETN  369 (698)
T ss_pred             eeEEecc-ceEEEEecCceeeec------c---------------cc------cCCccccCcccCCC-cceEEEEccccc
Confidence            9998776 578899876432221      1               00      12356888999998 667764322   


Q ss_pred             --CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEE----------ECCCcEEEEeCCCCCCccceEeecCCe
Q 010769          288 --DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG----------SFDRSVVMKDARISTHSGFKWAVAADV  355 (502)
Q Consensus       288 --Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~----------~~dg~i~vwd~~~~~~~~~~~~~~~~v  355 (502)
                        -..+.|-.+.+++.+++-..|.-.=..|.|-.+| .+|+.-          +.=..+-|+.++....+.........|
T Consensus       370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v  448 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV  448 (698)
T ss_pred             CCcceEEEEecCccceeeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence              2357777777887777776666555667787777 555432          222346678888877777777888899


Q ss_pred             EEEEeCCCCCCEEEEEeC--CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE---eCCCcEE
Q 010769          356 ESLAWDPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG---STDKMVK  430 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~---s~dg~i~  430 (502)
                      ...+|-|.|..+.+..+.  ..++.+|-+.+....     ...+..+.  ....+.+.|+|.| ++++.+   |..|.+.
T Consensus       449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~-----~~lVk~~d--k~~~N~vfwsPkG-~fvvva~l~s~~g~l~  520 (698)
T KOG2314|consen  449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK-----PSLVKELD--KKFANTVFWSPKG-RFVVVAALVSRRGDLE  520 (698)
T ss_pred             eeeeeccCCCeEEEEEccccccceeEEEeecCCCc-----hhhhhhhc--ccccceEEEcCCC-cEEEEEEecccccceE
Confidence            999999998866555543  357889988753110     13333333  3667899999998 666654   4578899


Q ss_pred             EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCc
Q 010769          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDA  483 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~------dg~i~vwd~~~~~  483 (502)
                      ++|+...... ......| ...+.+.|.|.|+| ++++++      |..-+||++...-
T Consensus       521 F~D~~~a~~k-~~~~~eh-~~at~veWDPtGRY-vvT~ss~wrhk~d~GYri~tfqGrl  576 (698)
T KOG2314|consen  521 FYDTDYADLK-DTASPEH-FAATEVEWDPTGRY-VVTSSSSWRHKVDNGYRIFTFQGRL  576 (698)
T ss_pred             EEecchhhhh-hccCccc-cccccceECCCCCE-EEEeeehhhhccccceEEEEeecHH
Confidence            9999853311 1222223 34677899999998 555554      4457888886543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.22  E-value=1.6e-10  Score=100.47  Aligned_cols=148  Identities=19%  Similarity=0.234  Sum_probs=105.0

Q ss_pred             CcEEEEEecCCcEEEEECCCCee-eEEecc-CCCCeEEEEEcCCCCcEEEEEE-----CCCcEEEEeCCCCCCccceEee
Q 010769          279 RNILASASADKQVKIWDVAAGKC-NLTLEH-HTDKVQAVAWNHHSPQILLSGS-----FDRSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       279 ~~~l~sgs~Dg~v~vwd~~~~~~-~~~~~~-h~~~v~~l~~~~~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~  351 (502)
                      .+-++++..||.+.+++.+.-.. .+.+.. |.+ -.+.++...+ +++.++.     .-+..+.|+++..+........
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~  178 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA  178 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecc-cEEecCCcceEeeccceeeecccccccccccccc
Confidence            45799999999999999765211 111111 111 1222233333 3444332     1234566777654433322233


Q ss_pred             cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      ...|.+++-+|...+++++|+.+|.+.+||.|+.        ..+...+.+|..+++.+-|+|..|..|++++.||.+..
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~  250 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH  250 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence            3449999999998889999999999999999988        47777889999999999999999999999999999999


Q ss_pred             EECCC
Q 010769          432 WDLSN  436 (502)
Q Consensus       432 wd~~~  436 (502)
                      ||..+
T Consensus       251 wdas~  255 (319)
T KOG4714|consen  251 WDAST  255 (319)
T ss_pred             EcCCC
Confidence            99875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=2e-09  Score=105.78  Aligned_cols=233  Identities=13%  Similarity=0.285  Sum_probs=145.2

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +....|+|+|+.||.++|..+.+...-....-|.            .......-..+.||...|.-+.
T Consensus        18 ~c~~W-------Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla------------a~snLsmNQtLeGH~~sV~vvT   78 (1189)
T KOG2041|consen   18 HCAEW-------NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA------------AASNLSMNQTLEGHNASVMVVT   78 (1189)
T ss_pred             EEEEE-------cccCCeEEeccccceeEEEEccccCCcccccccc------------cccccchhhhhccCcceEEEEE
Confidence            48888       5778999999999999999886532211100000            1112333446789999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEe--ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc----
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----  347 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----  347 (502)
                      |+.+ .+.|-|...+|.|.||-+-.|.-...+  ....+-|.+++|+.+| ..+.....||.|.+=.+...+....    
T Consensus        79 WNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg  156 (1189)
T KOG2041|consen   79 WNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKG  156 (1189)
T ss_pred             eccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcch
Confidence            9998 568889999999999999877654333  2245678999999999 7788888888776654432221100    


Q ss_pred             ------eE------------------------------------------eecCCeEEEEeC--------CCCCCEEEEE
Q 010769          348 ------KW------------------------------------------AVAADVESLAWD--------PHAEHSFVVS  371 (502)
Q Consensus       348 ------~~------------------------------------------~~~~~v~~v~~~--------p~~~~~l~~~  371 (502)
                            .|                                          ..+..+..+.|.        |+.+ .|+++
T Consensus       157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavc  235 (1189)
T KOG2041|consen  157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVC  235 (1189)
T ss_pred             heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEE
Confidence                  00                                          001113333443        2222 56666


Q ss_pred             eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC---------cEEEEECCCCCeeEE
Q 010769          372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---------MVKLWDLSNNQPSCI  442 (502)
Q Consensus       372 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg---------~i~vwd~~~~~~~~~  442 (502)
                      ..+|.+.+..-.+.        ..|+..-  ..-.+..+.|+++| ..|+.++.+.         .|.+|..-. .  .+
T Consensus       236 y~nGr~QiMR~eND--------~~Pvv~d--tgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G-~--i~  301 (1189)
T KOG2041|consen  236 YANGRMQIMRSEND--------PEPVVVD--TGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYG-H--IV  301 (1189)
T ss_pred             EcCceehhhhhcCC--------CCCeEEe--cccEeecceecCCC-cEEEEccCcccccCccccceEEEeccch-h--he
Confidence            66666665433332        1222221  22567889999998 8999888653         455554332 2  24


Q ss_pred             EEecCCCCCEEEEEEcCCCC
Q 010769          443 ASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~  462 (502)
                      .++......|++++|-..|-
T Consensus       302 gtlkvpg~~It~lsWEg~gL  321 (1189)
T KOG2041|consen  302 GTLKVPGSCITGLSWEGTGL  321 (1189)
T ss_pred             EEEecCCceeeeeEEcCCce
Confidence            44555556788888876653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=8.6e-09  Score=99.09  Aligned_cols=284  Identities=14%  Similarity=0.176  Sum_probs=176.9

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec----
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----  216 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~----  216 (502)
                      .....+++++|+++|.+..+      .++++.....   . ..+.....  -       .+++.|||-|+||.+--    
T Consensus        36 ~~~v~~~S~~G~lfA~~~~~------~v~i~~~~~~---~-~~lt~~~~--~-------~~~L~fSP~g~yL~T~e~~~i   96 (566)
T KOG2315|consen   36 PCNVFAYSNNGRLFAYSDNQ------VVKVFEIATL---K-VVLCVELK--K-------TYDLLFSPKGNYLLTWEPWAI   96 (566)
T ss_pred             cceeEEEcCCCcEEEEEcCC------eEEEEEccCC---c-EEEEeccc--e-------eeeeeeccccccccccccccc
Confidence            36778899999999988765      7777776654   1 11111111  1       22344588888888621    


Q ss_pred             ------CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769          217 ------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       217 ------~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~  290 (502)
                            ....+.+|++.++..... .                         ....+.. ++++|+.+ . .|++=-..+.
T Consensus        97 ~~~~~~~~pn~~v~~vet~~~~s~-~-------------------------q~k~Q~~-W~~qfs~d-E-sl~arlv~ne  147 (566)
T KOG2315|consen   97 YGPKNASNPNVLVYNVETGVQRSQ-I-------------------------QKKMQNG-WVPQFSID-E-SLAARLVSNE  147 (566)
T ss_pred             ccCCCCCCCceeeeeeccceehhh-e-------------------------ehhhhcC-cccccccc-h-hhhhhhhcce
Confidence                  124577898876211111 0                         0012222 68899998 4 3444444578


Q ss_pred             EEEEECCCCeeeEEeccCCCCeEEEEEcCCCC-cEEEE-----EECCCcEEEEeCCCCCC---ccceEeecCCeEEEEeC
Q 010769          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-QILLS-----GSFDRSVVMKDARISTH---SGFKWAVAADVESLAWD  361 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s-----~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~v~~~  361 (502)
                      |.+|++..-+.+. -.-|...|+.+.++|... ..+++     .+.-+.|+||.......   .....-....-..+.|+
T Consensus       148 v~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN  226 (566)
T KOG2315|consen  148 VQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWN  226 (566)
T ss_pred             EEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEec
Confidence            9999987743222 233678899999999843 33332     34556899998763221   11111223444567899


Q ss_pred             CCCCCEEEEEeC-----------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE-EeCCCcE
Q 010769          362 PHAEHSFVVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDKMV  429 (502)
Q Consensus       362 p~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t-~s~dg~i  429 (502)
                      +-+..+|+..+.           ..+++++++...         .....+ ...++|.++.|+|.+..+.++ |-.-..+
T Consensus       227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~---------s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkv  296 (566)
T KOG2315|consen  227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE---------SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKV  296 (566)
T ss_pred             cCCceEEEEEEEeecCCCccccccceEEEEEecCc---------eEEEec-CCCCCceEEEECCCCCEEEEEEecccceE
Confidence            877766655542           235777777732         233333 257899999999998444443 4456789


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCcccccc
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~--dg~i~vwd~~~~~~~~~~  488 (502)
                      .|||++..-   ++.+  ..++-+++-|+|.|++++++|-.  .|.|.|||+.+.+++.+.
T Consensus       297 tifnlr~~~---v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~  352 (566)
T KOG2315|consen  297 TIFNLRGKP---VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF  352 (566)
T ss_pred             EEEcCCCCE---eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence            999997542   4443  45788899999999976655543  378999999998777554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.20  E-value=5.6e-09  Score=91.40  Aligned_cols=238  Identities=15%  Similarity=0.088  Sum_probs=152.1

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      +-.+||.|+..|...+|...+.+....                          .-..|...|+-+.=..+...-+..++.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~--------------------------~cd~snn~v~~~~r~cd~~~~~~i~sn  136 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLY--------------------------QCDVSNNDVTLVKRYCDLKFPLNIASN  136 (344)
T ss_pred             cccEEEeccccceeeeecccCccccee--------------------------eecccccchhhhhhhcccccceeeccC
Confidence            456899999999999999875433211                          111232322222211121234667888


Q ss_pred             CCcEEEEECCCCeeeEEeccCCC--CeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce---EeecCCeEEEEeCC
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDP  362 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~v~~~p  362 (502)
                      |.++++.++..+.....+  |..  .+.++++++++ +++++.+....|.+|.+.........   ......-.+..|+.
T Consensus       137 dht~k~~~~~~~s~~~~~--h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~  213 (344)
T KOG4532|consen  137 DHTGKTMVVSGDSNKFAV--HNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE  213 (344)
T ss_pred             CcceeEEEEecCccccee--eccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence            999999988754332222  332  38899999998 89999999999999988765433222   12344567888998


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC-EEEEEeCCCcEEEEECCCCCeeE
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      .+. .|++++.||++.|||+|......    .....+...|.+.+..+.|++.|+- +|...-.-+.+.|.|+++.+...
T Consensus       214 ~~~-~FAv~~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  214 NDL-QFAVVFQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             Ccc-eEEEEecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            655 89999999999999999863211    1112233458999999999986643 33333345779999999986433


Q ss_pred             EEEec------CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          442 IASRN------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       442 ~~~~~------~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      +....      .....|+...|+.++.. +.+.+.+ .+.=|++.+
T Consensus       289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s-~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  289 VIVIPDDVERKHNTQHIFGTNFNNENES-NDVKNEL-QGAEYNILS  332 (344)
T ss_pred             EEecCccccccccccccccccccCCCcc-cccccch-hhheeeccc
Confidence            33322      22245888888888775 3333332 344555544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.20  E-value=1.3e-08  Score=109.79  Aligned_cols=314  Identities=16%  Similarity=0.247  Sum_probs=188.3

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEE--ecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYIL--EESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ....|-++.+.++...|+++...|     .|..+  +....   .....--..+..-..|++|       |||+.+||..
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~G-----di~~~~~~~~~~---~~~~E~VG~vd~GI~a~~W-------SPD~Ella~v  138 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASG-----DIILVREDPDPD---EDEIEIVGSVDSGILAASW-------SPDEELLALV  138 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCc-----eEEEEEccCCCC---CceeEEEEEEcCcEEEEEE-------CCCcCEEEEE
Confidence            456899999999999999999888     44444  22111   1111111234444589999       8999999999


Q ss_pred             cCCCcEEEeeCCCCCCCCc-----------eeeeCCcchhhhhhccccCC-------cccc----ccccCCcccceeeEE
Q 010769          216 SMEPAIEIWDLDVIDEVQP-----------HVILGGIDEEKKKKKSKKGK-------KSSI----KYKKGSHTDSVLGLA  273 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~-------~~~~----~~~~~~h~~~V~~l~  273 (502)
                      +.+++|.+..-+- +.+..           ..+.-|.++...+.+.+..|       ....    ...+. +.+.-..|+
T Consensus       139 T~~~~l~~mt~~f-d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS  216 (928)
T PF04762_consen  139 TGEGNLLLMTRDF-DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS  216 (928)
T ss_pred             eCCCEEEEEeccc-eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence            9999988765321 11110           00000000000000000000       0000    11222 556778899


Q ss_pred             ecCCCCcEEEEEec---C---CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC---CCcEEEEeCCCCCC
Q 010769          274 WNKEFRNILASASA---D---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DRSVVMKDARISTH  344 (502)
Q Consensus       274 ~~~~~~~~l~sgs~---D---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~  344 (502)
                      |-.| +.++|+.+.   .   ..++||+ +.|....+...-.+--.+++|.|.| +++++.-.   ...|.+|.-...+.
T Consensus       217 WRGD-G~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrh  293 (928)
T PF04762_consen  217 WRGD-GEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRH  293 (928)
T ss_pred             ECCC-CcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEe
Confidence            9999 457777764   2   5799999 4466555444344445678999999 77777654   34566776554333


Q ss_pred             ccceE---eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEE
Q 010769          345 SGFKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       345 ~~~~~---~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l  420 (502)
                      -....   .....|..+.|++++. +|++...+. |++|-..+..       .-..+.+.. ....+..+.|+|..+..|
T Consensus       294 geF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~p~~L  364 (928)
T PF04762_consen  294 GEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYH-------WYLKQEIRFSSSESVNFVKWDPEKPLRL  364 (928)
T ss_pred             eeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCE-------EEEEEEEEccCCCCCCceEECCCCCCEE
Confidence            22222   2345789999999876 677766544 9999988752       122222322 223455599999887888


Q ss_pred             EEEeCCCcEEEEEC----CCC----------------CeeEE--------------EEecCCCCCEEEEEEcCCCCcEEE
Q 010769          421 ATGSTDKMVKLWDL----SNN----------------QPSCI--------------ASRNPKAGAVFSVAFSEDSPFVLA  466 (502)
Q Consensus       421 ~t~s~dg~i~vwd~----~~~----------------~~~~~--------------~~~~~~~~~v~~~~~spd~~~lla  466 (502)
                      ...+.+|.+..+++    ..+                ....+              ..+. -..+|..++|++++. .+|
T Consensus       365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-~~a  442 (928)
T PF04762_consen  365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-RFA  442 (928)
T ss_pred             EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-eEE
Confidence            88887777765443    111                10111              1111 246799999999987 488


Q ss_pred             EEeCCCcEEEEECCCC
Q 010769          467 IGGSKGKLEIWDTLSD  482 (502)
Q Consensus       467 sg~~dg~i~vwd~~~~  482 (502)
                      +-..+|.|.+|.....
T Consensus       443 vl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  443 VLTSDGSLSIYEWDLK  458 (928)
T ss_pred             EEECCCCEEEEEecCC
Confidence            8899999999986543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.18  E-value=3e-09  Score=96.17  Aligned_cols=235  Identities=15%  Similarity=0.220  Sum_probs=168.4

Q ss_pred             CCCCEEEEecCCCcEEEeeC-CCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          207 EKGNFMAVGSMEPAIEIWDL-DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      |...-+.+.+.|.++|||-- +.++....                          .......+++++++++. ...|+.|
T Consensus        34 ~~e~gv~~~s~drtvrv~lkrds~q~wps--------------------------I~~~mP~~~~~~~y~~e-~~~L~vg   86 (404)
T KOG1409|consen   34 PKEEGVISVSEDRTVRVWLKRDSGQYWPS--------------------------IYHYMPSPCSAMEYVSE-SRRLYVG   86 (404)
T ss_pred             cCCCCeEEccccceeeeEEeccccccCch--------------------------hhhhCCCCceEeeeecc-ceEEEEE
Confidence            45666889999999999953 22221111                          11234578999999998 5588999


Q ss_pred             ecCCcEEEEECC----CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeC
Q 010769          286 SADKQVKIWDVA----AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  361 (502)
Q Consensus       286 s~Dg~v~vwd~~----~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~  361 (502)
                      -..|++.-+.+.    ....++....|...|..+-|+-.. ..+++.+.|..+.---.+.+.... ........+++.+.
T Consensus        87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg-~Y~~~~~~t~~~~d  164 (404)
T KOG1409|consen   87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLG-GYNFETPASALQFD  164 (404)
T ss_pred             EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCccc-ceEeeccCCCCcee
Confidence            999999988654    445566677899999999998766 788888888876544444433322 11222222222222


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      -  . +.++|...|.|..-.+....       ..++.++.+|...+.+++|.|.. ++|.+|..|..+.+||+...+. .
T Consensus       165 ~--~-~~fvGd~~gqvt~lr~~~~~-------~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g-~  232 (404)
T KOG1409|consen  165 A--L-YAFVGDHSGQITMLKLEQNG-------CQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKG-T  232 (404)
T ss_pred             e--E-EEEecccccceEEEEEeecC-------CceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcc-e
Confidence            1  1 45566667766665554332       37788999999999999999976 9999999999999999987653 4


Q ss_pred             EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      .....+|...|..+...+--+ .|.+++.||.|.+|++....
T Consensus       233 ~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  233 AYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEecccee
Confidence            667788889999988888777 58889999999999997544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.17  E-value=1e-07  Score=90.77  Aligned_cols=249  Identities=11%  Similarity=0.104  Sum_probs=144.7

Q ss_pred             CCCCCEEEEecC----------CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec
Q 010769          206 REKGNFMAVGSM----------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN  275 (502)
Q Consensus       206 s~~~~~la~g~~----------dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  275 (502)
                      ||+++.|.++..          +..|.|||+.+......+.+-..                 +..   ........++++
T Consensus        54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~-----------------p~~---~~~~~~~~~~ls  113 (352)
T TIGR02658        54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG-----------------PRF---LVGTYPWMTSLT  113 (352)
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC-----------------chh---hccCccceEEEC
Confidence            899998887766          68999999987654433221100                 000   012234578899


Q ss_pred             CCCCcEEEEEe-c-CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-eEee-
Q 010769          276 KEFRNILASAS-A-DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAV-  351 (502)
Q Consensus       276 ~~~~~~l~sgs-~-Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~-  351 (502)
                      |+++ +|+... . +..|.+.|+.+++.+..+.- .+...-...+...   +.+-+.||.....-+........ .... 
T Consensus       114 ~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf  188 (352)
T TIGR02658       114 PDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDT---FFMHCRDGSLAKVGYGTKGNPKIKPTEVF  188 (352)
T ss_pred             CCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCc---cEEEeecCceEEEEecCCCceEEeeeeee
Confidence            9965 555444 3 78999999999999988864 2222222332222   22333455544433322211110 0000 


Q ss_pred             -c--CCe-EEEEeCC-CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-------cCCCCeeEEEEcCCCCCE
Q 010769          352 -A--ADV-ESLAWDP-HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       352 -~--~~v-~~v~~~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~~  419 (502)
                       .  ..+ ..-.|.+ ++ ..++++.. |.|.+.|+.......    ..+...+.       ...+.+.-++++|++.++
T Consensus       189 ~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~----~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l  262 (352)
T TIGR02658       189 HPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKF----LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI  262 (352)
T ss_pred             cCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCccee----cceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence             0  000 0003445 44 46666666 999999975542111    11111111       133444559999998444


Q ss_pred             EEEEe---------CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCcccccc
Q 010769          420 LATGS---------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       420 l~t~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ++...         ..+.|.++|..+.+.  +..+.. ...+..++++||++ .++++...++.|.++|+.+++.+++.
T Consensus       263 yV~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       263 YLLADQRAKWTHKTASRFLFVVDAKTGKR--LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEecCCccccccCCCCEEEEEECCCCeE--EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            44231         125799999998873  333332 35789999999999 65666657889999999999998876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=2.8e-07  Score=84.68  Aligned_cols=290  Identities=12%  Similarity=0.185  Sum_probs=176.7

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .+....+-|+|+|+.+.|-++...++.+.+..|.++...+   .|..-....++.-|.|-      ++.+++|++|+++.
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G---~Lt~ln~~~~~g~~p~y------vsvd~~g~~vf~An  107 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG---RLTFLNRQTLPGSPPCY------VSVDEDGRFVFVAN  107 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC---eEEEeeccccCCCCCeE------EEECCCCCEEEEEE
Confidence            3556788899999999999998887777888888887655   55555555566665442      22278999999987


Q ss_pred             CC-CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe-cCCcEEEE
Q 010769          217 ME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIW  294 (502)
Q Consensus       217 ~d-g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs-~Dg~v~vw  294 (502)
                      .. |.|.++-+.....+.+..-.-.+..          + .....   ..+.-+.+..+.|+++ +|+++. .--.|.+|
T Consensus       108 Y~~g~v~v~p~~~dG~l~~~v~~~~h~g----------~-~p~~r---Q~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y  172 (346)
T COG2706         108 YHSGSVSVYPLQADGSLQPVVQVVKHTG----------S-GPHER---QESPHVHSANFTPDGR-YLVVPDLGTDRIFLY  172 (346)
T ss_pred             ccCceEEEEEcccCCccccceeeeecCC----------C-CCCcc---ccCCccceeeeCCCCC-EEEEeecCCceEEEE
Confidence            65 8999999865333322211100000          0 00000   1112277888999954 665553 33469999


Q ss_pred             ECCCCeeeEEec---cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-ccce---------EeecCCeEEEEeC
Q 010769          295 DVAAGKCNLTLE---HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFK---------WAVAADVESLAWD  361 (502)
Q Consensus       295 d~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~---------~~~~~~v~~v~~~  361 (502)
                      ++..|+....-.   .-......|.|||++.-..++.-.+++|.+|....... ....         +........+..+
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis  252 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS  252 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence            999776432211   23456788999999944445556799999999876411 1111         1223457788999


Q ss_pred             CCCCCEEEEE-eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEECCC--C
Q 010769          362 PHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN--N  437 (502)
Q Consensus       362 p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~vwd~~~--~  437 (502)
                      |+|+ +|+++ .....|.+|.+......     ...+.....+...-..+.|+|.+ ++|+++.. +.+|.+|.+..  +
T Consensus       253 ~dGr-FLYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~~TG  325 (346)
T COG2706         253 PDGR-FLYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDKETG  325 (346)
T ss_pred             CCCC-EEEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcCCCc
Confidence            9987 45554 34457888887755210     12222333445557889999988 77777665 45688886654  4


Q ss_pred             CeeEEEEecCCCCCEEEEEEc
Q 010769          438 QPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      +...+.. ........|+.|.
T Consensus       326 ~L~~~~~-~~~~p~Pvcv~f~  345 (346)
T COG2706         326 RLTLLGR-YAVVPEPVCVKFL  345 (346)
T ss_pred             eEEeccc-ccCCCCcEEEEEc
Confidence            3222222 1233344566654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.17  E-value=1.2e-09  Score=97.38  Aligned_cols=242  Identities=19%  Similarity=0.281  Sum_probs=159.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCC-CCCceeeeCCcchhhhhhccccCCccccccccCCc------------ccceeeE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH------------TDSVLGL  272 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~V~~l  272 (502)
                      ...|.|||+|...|.|.+|.-.... +..                       +....+++|            ...|..+
T Consensus        35 d~tg~YlatGDkgGRVvlfer~~s~~cey-----------------------kf~teFQshe~EFDYLkSleieEKin~I   91 (460)
T COG5170          35 DETGLYLATGDKGGRVVLFEREKSYGCEY-----------------------KFFTEFQSHELEFDYLKSLEIEEKINAI   91 (460)
T ss_pred             ccccceEeecCCCceEEEeecccccccch-----------------------hhhhhhcccccchhhhhhccHHHHhhhe
Confidence            5679999999999999999764321 111                       111112222            3467888


Q ss_pred             EecCC-CCcEEEEEecCCcEEEEECCCCe-------------------e-----------------------eEEe-ccC
Q 010769          273 AWNKE-FRNILASASADKQVKIWDVAAGK-------------------C-----------------------NLTL-EHH  308 (502)
Q Consensus       273 ~~~~~-~~~~l~sgs~Dg~v~vwd~~~~~-------------------~-----------------------~~~~-~~h  308 (502)
                      .|..+ +++.++..+.|.+|++|.+....                   +                       .+.+ ..|
T Consensus        92 ~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH  171 (460)
T COG5170          92 EWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAH  171 (460)
T ss_pred             eeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccc
Confidence            88654 56677778899999999875220                   0                       0011 347


Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe--------ecCCeEEEEeCCCCCCEEEEEeCCCeEEEE
Q 010769          309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVESLAWDPHAEHSFVVSLEDGTIKGF  380 (502)
Q Consensus       309 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~  380 (502)
                      ...|.++.++.+. ..++++ .|=.|.+|++...........        ...-|++..|+|...+.|..++..|.|++-
T Consensus       172 ~yhiNSiS~NsD~-et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         172 PYHINSISFNSDK-ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             eeEeeeeeecCch-heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            7788899999887 556554 477899999886554322221        123488999999877889999999999999


Q ss_pred             ECCCCCCCCCCCCCCccE----------EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC-
Q 010769          381 DIRTAKSDPDSTSQQSSF----------TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA-  449 (502)
Q Consensus       381 d~~~~~~~~~~~~~~~~~----------~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~-  449 (502)
                      |+|........   ..++          -+..-.+.|+.+.|+++| +++++-.. -+|++||++..+. ++.+...|. 
T Consensus       250 DlRq~alcdn~---~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~-pikTi~~h~~  323 (460)
T COG5170         250 DLRQSALCDNS---KKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKN-PIKTIPMHCD  323 (460)
T ss_pred             hhhhhhhccCc---hhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccC-CceeechHHH
Confidence            99965321111   1111          112234678899999998 78877654 5799999987652 455554442 


Q ss_pred             -----------CCE---EEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          450 -----------GAV---FSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       450 -----------~~v---~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                                 ..|   +.+.|+.+... +.+|+..+..-+|-+
T Consensus       324 l~~~l~d~YEnDaifdkFeisfSgd~~~-v~sgsy~NNfgiyp~  366 (460)
T COG5170         324 LMDELNDVYENDAIFDKFEISFSGDDKH-VLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHHHhhhhccceeeeEEEEecCCccc-ccccccccceeeecc
Confidence                       223   46788888875 777888777777764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.14  E-value=1.1e-09  Score=98.99  Aligned_cols=206  Identities=13%  Similarity=0.234  Sum_probs=140.4

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe-----eeEEeccCC------------CCeEEEEEcCCCC-cEEE
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-----CNLTLEHHT------------DKVQAVAWNHHSP-QILL  326 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~~-~~l~  326 (502)
                      ..+.|.++.|... +.+||+|..+|.|.++.-....     ....++.|.            .+|..+.|.+++. ..++
T Consensus        24 eadiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   24 EADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hhcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            4577999999998 5699999999999999643222     233444443            4788999988763 4677


Q ss_pred             EEECCCcEEEEeCCCCCCcc--------------------c----------------eEeecCCeEEEEeCCCCCCEEEE
Q 010769          327 SGSFDRSVVMKDARISTHSG--------------------F----------------KWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       327 s~~~dg~i~vwd~~~~~~~~--------------------~----------------~~~~~~~v~~v~~~p~~~~~l~~  370 (502)
                      ..+.|.+|++|.++......                    .                ...|...|++++++.+..  .+.
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t~l  180 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--TFL  180 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--eEe
Confidence            78889999999886432111                    0                012345688899988765  445


Q ss_pred             EeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee----E
Q 010769          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS----C  441 (502)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~----~  441 (502)
                      +..|=.|.+|++.-...      .-.+.-+..+     +.-|++..|+|...++++-.+..|+|++.|++.....    .
T Consensus       181 SADdLRINLWnlei~d~------sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  181 SADDLRINLWNLEIIDQ------SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             eccceeeeeccccccCC------ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence            56788999999876521      1112222223     2458899999987789999999999999999954310    0


Q ss_pred             EEEe----------cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          442 IASR----------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       442 ~~~~----------~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ++..          ..-...|..+.|+++|+| +++- .--+|+|||+..
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~sGry-ilsR-Dyltvk~wD~nm  302 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-ILSR-DYLTVKLWDLNM  302 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEccCCcE-EEEe-ccceeEEEeccc
Confidence            1111          112346888999999997 4432 236899999944

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=1.1e-10  Score=111.22  Aligned_cols=210  Identities=19%  Similarity=0.262  Sum_probs=143.7

Q ss_pred             cccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC-------CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC
Q 010769          260 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR  332 (502)
Q Consensus       260 ~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  332 (502)
                      ..+.||+..|..++-..+ .+-++++|.|++|++|.++.       ..|..+++.|..+|.++.|-.+. +.++  +.||
T Consensus       729 ~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--ScD~  804 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SCDG  804 (1034)
T ss_pred             ecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceee--eccC
Confidence            356799999999987666 67899999999999999863       34778889999999999998876 5554  5589


Q ss_pred             cEEEEeCCCCCCccc-eE-eecCCeEEEEeCCC-CCCEEEEE-eCCCeEEEEECCCCCCCCCCCCCCccEEE---ecCCC
Q 010769          333 SVVMKDARISTHSGF-KW-AVAADVESLAWDPH-AEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDK  405 (502)
Q Consensus       333 ~i~vwd~~~~~~~~~-~~-~~~~~v~~v~~~p~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~h~~  405 (502)
                      .|.+||.-.++.... .+ ...+.+..+..-++ ...++++| +...+|+++|.|...-       .+-+..   .+...
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-------~~E~kVcna~~Pna  877 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-------TCELKVCNAPGPNA  877 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc-------eeeEEeccCCCCch
Confidence            999999866655432 22 11222222222222 22344444 7888999999997631       222222   33456


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEE-EECCCCcc
Q 010769          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI-WDTLSDAG  484 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~v-wd~~~~~~  484 (502)
                      .+.+++..+.| +.++++-..|+|.+.|.++++.  +....+..-....++- |..++ |+....|.++.| |....+..
T Consensus       878 ~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~v--INswrpmecdllqlaa-psdq~-L~~saldHslaVnWhaldgim  952 (1034)
T KOG4190|consen  878 LTRAIAVADKG-NKLAAALSNGCIAILDARNGKV--INSWRPMECDLLQLAA-PSDQA-LAQSALDHSLAVNWHALDGIM  952 (1034)
T ss_pred             heeEEEeccCc-chhhHHhcCCcEEEEecCCCce--eccCCcccchhhhhcC-chhHH-HHhhcccceeEeeehhcCCee
Confidence            68999999998 8999999999999999999973  3333333233333332 44453 666777778888 87766554


Q ss_pred             c
Q 010769          485 I  485 (502)
Q Consensus       485 ~  485 (502)
                      .
T Consensus       953 h  953 (1034)
T KOG4190|consen  953 H  953 (1034)
T ss_pred             e
Confidence            3

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.10  E-value=5.3e-10  Score=110.20  Aligned_cols=220  Identities=19%  Similarity=0.291  Sum_probs=157.1

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC--CcEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF--RNILA  283 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~~l~  283 (502)
                      +|.|+-+|.++.-|.. |-|++..  ..|...|                       ...-.-.|-.+.|+|..  ...++
T Consensus        33 ~p~grdi~lAsr~gl~-i~dld~p--~~ppr~l-----------------------~h~tpw~vad~qws~h~a~~~wiV   86 (1081)
T KOG0309|consen   33 NPSGRDIVLASRQGLY-IIDLDDP--FTPPRWL-----------------------HHITPWQVADVQWSPHPAKPYWIV   86 (1081)
T ss_pred             ccccchhhhhhhcCeE-EEeccCC--CCCceee-----------------------eccCcchhcceecccCCCCceeEE
Confidence            6778888888877654 5577531  1111110                       00112346677887752  22344


Q ss_pred             EEecCCcEEEEECCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEE
Q 010769          284 SASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLA  359 (502)
Q Consensus       284 sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~  359 (502)
                      +.+ ...-.+|++...   ..-..+-+|+..|+.+.|+|+.+.++++++.|-.+..||+|++......+ ........|.
T Consensus        87 sts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVk  165 (1081)
T KOG0309|consen   87 STS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVK  165 (1081)
T ss_pred             ecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceee
Confidence            444 455678988643   33445578999999999999999999999999999999999987654333 4456678899


Q ss_pred             eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      |+...++ +++.+....|++||+|.+        ..++..+.+|...|.++.|+......+.+++.|++|++||......
T Consensus       166 wnyk~p~-vlasshg~~i~vwd~r~g--------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  166 WNYKDPN-VLASSHGNDIFVWDLRKG--------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             ecccCcc-hhhhccCCceEEEeccCC--------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence            9988774 556666778999999998        6889999999999999999987667899999999999999977543


Q ss_pred             eEEEEecCCCCCEEEEEEcCCCC
Q 010769          440 SCIASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~  462 (502)
                      ..... .....+|+.-.+.|-|.
T Consensus       237 e~~~~-vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  237 ESKRT-VTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             cccee-ccccCcceeccccccCc
Confidence            22222 22345677777777553

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.10  E-value=2.4e-08  Score=87.44  Aligned_cols=202  Identities=13%  Similarity=0.013  Sum_probs=137.8

Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEe-ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEE
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      .+||.|+..|...+|.+.+.+....+ ..|...|+-+.=.-+...-+..++.|.++++.++.............-.+.++
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~  164 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL  164 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence            48999999999999999876543332 33444343222112222346778888888888887554332222222337899


Q ss_pred             EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE-EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       359 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      ++++++. ++++.+....|..|.+.....       ..+. ........-.+.+|+... ..+|+++.||++.|||++..
T Consensus       165 ~~snd~~-~~~~Vgds~~Vf~y~id~~se-------y~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  165 HYSNDPS-WGSSVGDSRRVFRYAIDDESE-------YIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             EEcCCCc-eEEEecCCCcceEEEeCCccc-------eeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccc
Confidence            9999866 788888889999999876521       2222 333444556788899876 89999999999999999986


Q ss_pred             Cee---EEEEecCCCCCEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCCcccccccc
Q 010769          438 QPS---CIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       438 ~~~---~~~~~~~~~~~v~~~~~spd~~~-llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      ...   ...+...|.|.+..+.|++.|.. ||...-.-+.+.|-|+++......+..
T Consensus       236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i  292 (344)
T KOG4532|consen  236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI  292 (344)
T ss_pred             ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence            532   22345678999999999987642 344344457899999999887665443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.07  E-value=1.3e-09  Score=117.14  Aligned_cols=187  Identities=17%  Similarity=0.244  Sum_probs=140.2

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d  218 (502)
                      -+.|.++.=+|...+.++|+.++   .+++|.|..+.    .+++...... +....       ..|+.+|+.+.++..|
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~dg---sv~~~~w~~~~----~v~~~rt~g~-s~vtr-------~~f~~qGnk~~i~d~d 2272 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDG---SVRMFEWGHGQ----QVVCFRTAGN-SRVTR-------SRFNHQGNKFGIVDGD 2272 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCCc---eEEEEeccCCC----eEEEeeccCc-chhhh-------hhhcccCCceeeeccC
Confidence            35688899999999999999887   56777776554    4444443222 22222       2347789999999999


Q ss_pred             CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe---cCCcEEEEE
Q 010769          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS---ADKQVKIWD  295 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs---~Dg~v~vwd  295 (502)
                      |.+.+|...                            +++....+.|......+.|-.   ..+++++   .++.+.+||
T Consensus      2273 g~l~l~q~~----------------------------pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwD 2321 (2439)
T KOG1064|consen 2273 GDLSLWQAS----------------------------PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWD 2321 (2439)
T ss_pred             CceeecccC----------------------------CcceeccccCCccccceeeee---hhhhccccCCCCCcccchh
Confidence            999999986                            222233456888888888875   3666664   468899999


Q ss_pred             CCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEe
Q 010769          296 VAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       296 ~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  372 (502)
                      ..-.   .++.  ..|.+.++++++-|.. ++|++|+.+|.|++||++..+.......         ++  ...+|++|+
T Consensus      2322 tl~~~~~s~v~--~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~s 2387 (2439)
T KOG1064|consen 2322 TLLPPMNSLVH--TCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGS 2387 (2439)
T ss_pred             cccCcccceee--eecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccC
Confidence            6532   2333  7799999999999999 9999999999999999998766543222         33  245899999


Q ss_pred             CCCeEEEEECCCC
Q 010769          373 EDGTIKGFDIRTA  385 (502)
Q Consensus       373 ~dg~i~i~d~~~~  385 (502)
                      ..|.++||++...
T Consensus      2388 s~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2388 SEGNIKIWRLSEF 2400 (2439)
T ss_pred             cccceEEEEcccc
Confidence            9999999999876

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=5e-08  Score=93.70  Aligned_cols=282  Identities=14%  Similarity=0.213  Sum_probs=164.3

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC---
Q 010769          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---  218 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d---  218 (502)
                      -+-+.|||-|.+|++-...|    +.+|-=..-..  ..-+.|.         .+.++++    ||..+||+|-+..   
T Consensus       213 etyv~wSP~GTYL~t~Hk~G----I~lWGG~~f~r--~~RF~Hp---------~Vq~idf----SP~EkYLVT~s~~p~~  273 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG----IALWGGESFDR--IQRFYHP---------GVQFIDF----SPNEKYLVTYSPEPII  273 (698)
T ss_pred             eeeEEecCCceEEEEEeccc----eeeecCccHHH--HHhccCC---------Cceeeec----CCccceEEEecCCccc
Confidence            46689999999999998775    45553221110  0111121         3344333    8999999986643   


Q ss_pred             --------CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769          219 --------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       219 --------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~  290 (502)
                              ..|+|||+.++..+..+.++.                        +....-.-+.||.+ ..++|.-.. .+
T Consensus       274 ~~~~d~e~~~l~IWDI~tG~lkrsF~~~~------------------------~~~~~WP~frWS~D-dKy~Arm~~-~s  327 (698)
T KOG2314|consen  274 VEEDDNEGQQLIIWDIATGLLKRSFPVIK------------------------SPYLKWPIFRWSHD-DKYFARMTG-NS  327 (698)
T ss_pred             cCcccCCCceEEEEEccccchhcceeccC------------------------CCccccceEEeccC-CceeEEecc-ce
Confidence                    468999999877665544321                        11112234579988 567776665 57


Q ss_pred             EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC-----CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  365 (502)
                      |.||+..+-.++-.-.-.-..|....|+|.+ ++|+-=.-     -..+.+-.+.+.+.+....-+.-.-..+.|..+|.
T Consensus       328 isIyEtpsf~lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd  406 (698)
T KOG2314|consen  328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD  406 (698)
T ss_pred             EEEEecCceeeecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence            9999876533322212234578888999987 66553221     11233333333332221111111122344555444


Q ss_pred             CEEEE----------EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEE
Q 010769          366 HSFVV----------SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWD  433 (502)
Q Consensus       366 ~~l~~----------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd  433 (502)
                       +|++          .+.-..+.|+.++..        ..++..+. -...|...+|-|.|.++.+..+.  ..++.+|-
T Consensus       407 -yLcvkvdR~tK~~~~g~f~n~eIfrireK--------dIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~  476 (698)
T KOG2314|consen  407 -YLCVKVDRHTKSKVKGQFSNLEIFRIREK--------DIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYA  476 (698)
T ss_pred             -EEEEEEEeeccccccceEeeEEEEEeecc--------CCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEE
Confidence             2222          122234667777765        24444443 45678999999999555444443  35688888


Q ss_pred             CCC--CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEE--eCCCcEEEEECCC
Q 010769          434 LSN--NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG--GSKGKLEIWDTLS  481 (502)
Q Consensus       434 ~~~--~~~~~~~~~~~~~~~v~~~~~spd~~~llasg--~~dg~i~vwd~~~  481 (502)
                      +.+  .++.++..+..  ...+.+.|+|.|+++++.+  |..|.+.++|+.-
T Consensus       477 ~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  477 VETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             eecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            874  33444444443  5678899999999865544  3478999999975

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.02  E-value=6.1e-07  Score=80.08  Aligned_cols=237  Identities=15%  Similarity=0.200  Sum_probs=134.5

Q ss_pred             ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCc--ceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010769          145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFP--LCMAWLDCPLKDREKGNFMAVGSMEPAIE  222 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~w~~~~~~~s~~~~~la~g~~dg~I~  222 (502)
                      +..+++|++||+....    .|+|..-...-.   .....-..+-..+|  -.++|       ||++.+||.+...|+|+
T Consensus         3 ~~~~~~Gk~lAi~qd~----~iEiRsa~Ddf~---si~~kcqVpkD~~PQWRkl~W-------SpD~tlLa~a~S~G~i~   68 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQ----CIEIRSAKDDFS---SIIGKCQVPKDPNPQWRKLAW-------SPDCTLLAYAESTGTIR   68 (282)
T ss_pred             eeecCCCcEEEEEecc----EEEEEeccCCch---heeEEEecCCCCCchheEEEE-------CCCCcEEEEEcCCCeEE
Confidence            5667899999888644    467765554333   33232232333333  13444       99999999999999999


Q ss_pred             EeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-----CcEEEEEecCCcEEEEECC
Q 010769          223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-----RNILASASADKQVKIWDVA  297 (502)
Q Consensus       223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-----~~~l~sgs~Dg~v~vwd~~  297 (502)
                      +||+......   .+.++               .   .....-..+|..|.|.+..     ...|+.-...|.++-|-+.
T Consensus        69 vfdl~g~~lf---~I~p~---------------~---~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs  127 (282)
T PF15492_consen   69 VFDLMGSELF---VIPPA---------------M---SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS  127 (282)
T ss_pred             EEecccceeE---EcCcc---------------c---ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence            9998642211   11000               0   0011234677778775542     2356667778888877653


Q ss_pred             C-----CeeeEEec---cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEE
Q 010769          298 A-----GKCNLTLE---HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       298 ~-----~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  369 (502)
                      .     .+..++|.   .+...|.++.|+|.. ++|++|+....      ..+.    .......+++-+.-.+.+.+..
T Consensus       128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~  196 (282)
T PF15492_consen  128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQ  196 (282)
T ss_pred             cccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEE
Confidence            2     23344442   357799999999998 67777665332      0000    0111222332222222232222


Q ss_pred             EEe-CCCe------EEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          370 VSL-EDGT------IKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       370 ~~~-~dg~------i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      +.. .++.      ..+|.+-+          ...+.. ......|..|..||+| .+||+...+|.|.+|++.+-+
T Consensus       197 v~~~~~~~~~~~~~~~~~~~~~----------~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRIPS----------FKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             ccccCccccccccccceeeccc----------eeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcch
Confidence            222 2221      11222211          111111 2245679999999999 999999999999999998765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=3.5e-07  Score=90.82  Aligned_cols=196  Identities=12%  Similarity=0.032  Sum_probs=120.6

Q ss_pred             ceeeEEecCCCCcEEEEEec---CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC--CcEEEEeCCCC
Q 010769          268 SVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKDARIS  342 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~---Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~vwd~~~~  342 (502)
                      .+....|+|++..+++..+.   ...|.++|+.+++...... ..+......|+|+|..++++.+.+  ..|.++++.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            67789999996654554333   3569999998886544433 455667788999996666666555  45777787766


Q ss_pred             CCccceEeecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769          343 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       343 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      .... ............|+|+|..+++++...|  .|+++|+.++.         . ..+.....  ....|+|+|..++
T Consensus       268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---------~-~rlt~~g~--~~~~~SPDG~~Ia  334 (419)
T PRK04043        268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---------V-EQVVFHGK--NNSSVSTYKNYIV  334 (419)
T ss_pred             cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---------e-EeCccCCC--cCceECCCCCEEE
Confidence            5332 2223333445689999987777765555  47777776552         1 11111111  1248999994444


Q ss_pred             EEEeCC--------CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc--EEEEECCC
Q 010769          421 ATGSTD--------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLS  481 (502)
Q Consensus       421 ~t~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~--i~vwd~~~  481 (502)
                      ++....        ..|.+.|+.++....+..   . +......|+|||+.++.+....+.  |.+.++..
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSDYIRRLTA---N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCCCeEECCC---C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            444332        368888988887433322   1 223358899999976555544444  55666644

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=9.3e-08  Score=95.32  Aligned_cols=241  Identities=16%  Similarity=0.158  Sum_probs=162.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-------
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-------  278 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-------  278 (502)
                      +| +.+||.|+. ..|.|-|..+.+.+                           ..+..|...|+.+.|.|..       
T Consensus        24 ~~-~GLiAygsh-slV~VVDs~s~q~i---------------------------qsie~h~s~V~~VrWap~~~p~~llS   74 (1062)
T KOG1912|consen   24 SP-SGLIAYGSH-SLVSVVDSRSLQLI---------------------------QSIELHQSAVTSVRWAPAPSPRDLLS   74 (1062)
T ss_pred             Cc-cceEEEecC-ceEEEEehhhhhhh---------------------------hccccCccceeEEEeccCCCchhccC
Confidence            55 447788765 56777776543322                           2344688999999998742       


Q ss_pred             ----CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCC---CcEEEEEECCCcEEEEeCCCCCCccceEee
Q 010769          279 ----RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS---PQILLSGSFDRSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       279 ----~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  351 (502)
                          ..+||++...|.|.+||...+..+..+..|..+++.++|-+..   ..+|++-....+|.+|+..+++..-.....
T Consensus        75 ~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys  154 (1062)
T KOG1912|consen   75 PSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS  154 (1062)
T ss_pred             ccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence                2367888889999999999999999999999999999997532   257888888899999999988754322223


Q ss_pred             cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC-------------------------C
Q 010769          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-------------------------A  406 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~-------------------------~  406 (502)
                      .....|+.+.|.+...|...+..|.|.+.+.-.......+  .+..+.-..|..                         .
T Consensus       155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~p--gk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity  232 (1062)
T KOG1912|consen  155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVP--GKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY  232 (1062)
T ss_pred             CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCC--ceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence            3456679999988878888888888888776544322111  111111111211                         1


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCC--CcEEEEEeCCCcEEEEECCC
Q 010769          407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS--PFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~--~~llasg~~dg~i~vwd~~~  481 (502)
                      ...++|+|.-.+.+.. .....+.|+|+.-.....+..+.  .+.+.-+.|-|++  . .|.+.-.+|.+.+|-.+.
T Consensus       233 ~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd-~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  233 CAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRD-ALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             HHhhhcChhhhceEEE-EeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcc-eEEEEecCCeEEEEEeec
Confidence            2235778876444443 34566999999988744444444  3444456666654  4 588899999999998765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.99  E-value=1.5e-08  Score=90.49  Aligned_cols=274  Identities=13%  Similarity=0.277  Sum_probs=166.4

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC--CCce---eeeeccc--------cCCCcceeeeecCCCC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG--DPNL---YVHHHII--------IPAFPLCMAWLDCPLK  204 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~--~~~l---~~~~~~~--------~~~~~~~~~w~~~~~~  204 (502)
                      ..+-|+++.|..+|.+|++|-..|     +|-.|......  +-.+   +..|+..        +......+.|..-   
T Consensus        25 ead~ItaVefd~tg~YlatGDkgG-----RVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~---   96 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGG-----RVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD---   96 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCc-----eEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC---
Confidence            467899999999999999997766     56555543321  0011   1223222        2223456777531   


Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCC--CCceee-------eCCc-chhhhhh--ccccCC----ccccccccCCcccc
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDE--VQPHVI-------LGGI-DEEKKKK--KSKKGK----KSSIKYKKGSHTDS  268 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~--~~~~~~-------l~~~-~~~~~~~--~~~~~~----~~~~~~~~~~h~~~  268 (502)
                        .+.+.++..+.|.+|++|.+.....  +....+       .++. ...+...  ......    ....+.....|+-.
T Consensus        97 --t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh  174 (460)
T COG5170          97 --TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH  174 (460)
T ss_pred             --CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence              2345666777899999999853211  000000       0000 0000000  000000    01112233578899


Q ss_pred             eeeEEecCCCCcEEEEEecCCcEEEEECCCCe---eeEEeccCC-----CCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGK---CNLTLEHHT-----DKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~---~~~~~~~h~-----~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  340 (502)
                      |.+++|+.+ ...+++ +.|-.|.+|++....   .+.-++.|.     .-|++..|+|.....+.-.+..|.|++.|+|
T Consensus       175 iNSiS~NsD-~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         175 INSISFNSD-KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             eeeeeecCc-hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            999999998 445554 456789999987532   222334443     4688999999987889999999999999999


Q ss_pred             CCCCccc----------------eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC
Q 010769          341 ISTHSGF----------------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD  404 (502)
Q Consensus       341 ~~~~~~~----------------~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~  404 (502)
                      .......                +......|..+.|++.|.  ++.+..--+|++||++..        ..|+.++..|.
T Consensus       253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr--yIlsRdyltvkiwDvnm~--------k~pikTi~~h~  322 (460)
T COG5170         253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR--YILSRDYLTVKIWDVNMA--------KNPIKTIPMHC  322 (460)
T ss_pred             hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc--EEEEeccceEEEEecccc--------cCCceeechHH
Confidence            5332110                011234577889999765  445555678999999988        47788776653


Q ss_pred             C------------Ce---eEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769          405 K------------AV---CTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       405 ~------------~v---~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      .            .|   ..+.|+.+. ..+++|+..+..-+|-.
T Consensus       323 ~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         323 DLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeecc
Confidence            1            22   346777766 77888888777777753

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.99  E-value=1e-06  Score=78.62  Aligned_cols=195  Identities=15%  Similarity=0.241  Sum_probs=115.6

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc-------CCCCeEEEEEcCCC-----CcEEEEEECCCcEE
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHS-----PQILLSGSFDRSVV  335 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~  335 (502)
                      .-.-++|+|+ ..+||.+...|+|+++|+.... +..+..       -+..|..|.|.+..     ...|++-.+.|.++
T Consensus        45 QWRkl~WSpD-~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   45 QWRKLAWSPD-CTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             hheEEEECCC-CcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            4567999999 6699999999999999987533 333321       23566777675432     24677888899888


Q ss_pred             EEeCCCCCCccc----eE----eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769          336 MKDARISTHSGF----KW----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       336 vwd~~~~~~~~~----~~----~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      -|-+..+.....    .+    .....|.++.|+|... +|++|+....      ...          .   -.+....+
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~------~~~----------~---s~a~~~GL  182 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR-LLLVGGCEQN------QDG----------M---SKASSCGL  182 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC-EEEEeccCCC------CCc----------c---ccccccCc
Confidence            887643221111    11    2356899999999755 6666543221      000          0   01122233


Q ss_pred             eEEEEcCCCCCEEEEEeC-CCc------EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          408 CTISYNPLVPNLLATGST-DKM------VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~-dg~------i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      ++-....+.|.+..+.+. ++.      ..+|.+-+.+  ...........|..|..||||. +||+...+|.|.+|++-
T Consensus       183 taWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~--~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  183 TAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK--FFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIP  259 (282)
T ss_pred             eEEEEcCCCCcEEEccccCccccccccccceeecccee--eeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecC
Confidence            333333333333322222 221      2344433322  1111223456799999999999 69999999999999998


Q ss_pred             CCccccc
Q 010769          481 SDAGISN  487 (502)
Q Consensus       481 ~~~~~~~  487 (502)
                      +-.+.+.
T Consensus       260 sL~~~~~  266 (282)
T PF15492_consen  260 SLRLQRS  266 (282)
T ss_pred             cchhhcc
Confidence            7766544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=1.7e-07  Score=93.47  Aligned_cols=300  Identities=12%  Similarity=0.113  Sum_probs=192.3

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCC---CCCC--CCEE
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK---DREK--GNFM  212 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~---~s~~--~~~l  212 (502)
                      +.....++.|+|.| +||.|+..      -|.+.+...-+......+|.    +....+.|.+...-   +||.  .-+|
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygshs------lV~VVDs~s~q~iqsie~h~----s~V~~VrWap~~~p~~llS~~~~~lli   82 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSHS------LVSVVDSRSLQLIQSIELHQ----SAVTSVRWAPAPSPRDLLSPSSSQLLI   82 (1062)
T ss_pred             CcccccccccCccc-eEEEecCc------eEEEEehhhhhhhhccccCc----cceeEEEeccCCCchhccCccccceeE
Confidence            44557889999998 45555533      45555544332222223443    45578899765433   2332  4467


Q ss_pred             EEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC---CCcEEEEEecCC
Q 010769          213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNILASASADK  289 (502)
Q Consensus       213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~~l~sgs~Dg  289 (502)
                      |++...|.|.+||+..                           ......+..|.++|..++|-+.   .+.+|+.-....
T Consensus        83 AsaD~~GrIil~d~~~---------------------------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss  135 (1062)
T KOG1912|consen   83 ASADISGRIILVDFVL---------------------------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS  135 (1062)
T ss_pred             EeccccCcEEEEEehh---------------------------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCc
Confidence            8888889999999864                           2223345578899999998653   346777777788


Q ss_pred             cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC---ccceE----eecC---------
Q 010769          290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKW----AVAA---------  353 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~----~~~~---------  353 (502)
                      +|.+|+..+|+.............|+.+.|-..+.+..-+..|.+.+.+.-....   ....+    .|..         
T Consensus       136 ~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a  215 (1062)
T KOG1912|consen  136 TLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA  215 (1062)
T ss_pred             EEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence            9999999999999888777778888999998877777777788887776532211   11111    1100         


Q ss_pred             ----------------CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769          354 ----------------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       354 ----------------~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                                      -...++|+|+-.+.++.. -...+.++|+.-.         .++.......+.+.-+.+.|+..
T Consensus       216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~---------~~l~vvpier~~akfv~vlP~~~  285 (1062)
T KOG1912|consen  216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYE---------CCLAVVPIERGGAKFVDVLPDPR  285 (1062)
T ss_pred             ccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhh---------ceeEEEEeccCCcceeEeccCCC
Confidence                            012356788766555544 4677899999865         56666666667677777877653


Q ss_pred             -CEEEEEeCCCcEEEEECCCCCee---------------EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          418 -NLLATGSTDKMVKLWDLSNNQPS---------------CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       418 -~~l~t~s~dg~i~vwd~~~~~~~---------------~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                       ..|++...||.+.+|-.+.....               +-.......-.+.....+|..+..++.--++|.+.+|.+++
T Consensus       286 rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~  365 (1062)
T KOG1912|consen  286 RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN  365 (1062)
T ss_pred             cceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence             47888889999999976542100               00000111223344455666444555556788899999987


Q ss_pred             Cccc
Q 010769          482 DAGI  485 (502)
Q Consensus       482 ~~~~  485 (502)
                      ++.-
T Consensus       366 ~ri~  369 (1062)
T KOG1912|consen  366 GRIH  369 (1062)
T ss_pred             CCcC
Confidence            6543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.97  E-value=6.9e-07  Score=98.41  Aligned_cols=168  Identities=9%  Similarity=0.153  Sum_probs=112.5

Q ss_pred             eeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc---------------CCCCeEEEEEcCCCCcEEEEEECCCc
Q 010769          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---------------HTDKVQAVAWNHHSPQILLSGSFDRS  333 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~---------------h~~~v~~l~~~~~~~~~l~s~~~dg~  333 (502)
                      -.+|+++|+++.++++.+.++.|++||..++... .+.+               .-.....|+++|++..++++-+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            4589999965778888888999999999877543 2211               11245679999998557777788899


Q ss_pred             EEEEeCCCCCCccce------------Ee---------ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCC
Q 010769          334 VVMKDARISTHSGFK------------WA---------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST  392 (502)
Q Consensus       334 i~vwd~~~~~~~~~~------------~~---------~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  392 (502)
                      |++||+.++......            +.         .-.....+++++++. ++++-+.++.|++||..+........
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG  842 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAG  842 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEec
Confidence            999999865421100            00         011246788999875 77888889999999987652100000


Q ss_pred             CCCc----cEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          393 SQQS----SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       393 ~~~~----~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      ....    -....++-.....++++++| +++++-+.++.|++||+.+++.
T Consensus       843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        843 TGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence            0000    00011222356789999998 8888888999999999988763

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.97  E-value=4.6e-08  Score=90.59  Aligned_cols=162  Identities=14%  Similarity=0.160  Sum_probs=110.9

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe---cC
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG---SM  217 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g---~~  217 (502)
                      .......+|.+++||++....   ..-+..|.....   .........++.-|..+.++       .....+.++   +.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K---~~~~f~~~~~~~---~~kl~~~~~v~~~~~ai~~~-------~~~~sv~v~dkagD  130 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSK---QRAVFDYRENPK---GAKLLDVSCVPKRPTAISFI-------REDTSVLVADKAGD  130 (390)
T ss_pred             cccccccCCCceEEEEEeCCC---ceEEEEEecCCC---cceeeeEeecccCcceeeee-------eccceEEEEeecCC
Confidence            345667889999999998876   233555554442   12222222334444444443       223333333   33


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      ...+.+|....+                            .....-||-..++.|+|+|+ ..+|+++..|..|+|-...
T Consensus       131 ~~~~di~s~~~~----------------------------~~~~~lGhvSml~dVavS~D-~~~IitaDRDEkIRvs~yp  181 (390)
T KOG3914|consen  131 VYSFDILSADSG----------------------------RCEPILGHVSMLLDVAVSPD-DQFIITADRDEKIRVSRYP  181 (390)
T ss_pred             ceeeeeeccccc----------------------------CcchhhhhhhhhheeeecCC-CCEEEEecCCceEEEEecC
Confidence            345556655421                            11123489999999999999 5699999999999998887


Q ss_pred             CCeeeEEe-ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          298 AGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       298 ~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      ..-.+.+| -||+..|..++.-++.  .|++|+.|++|++||+++++...
T Consensus       182 a~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  182 ATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDITSGKLLD  229 (390)
T ss_pred             cccchhhhccccHhheeeeeeccCc--eeeecCCCCcEEEEecccCCccc
Confidence            77677776 4699999999998764  69999999999999999988763

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.96  E-value=4.1e-06  Score=90.68  Aligned_cols=304  Identities=16%  Similarity=0.257  Sum_probs=184.9

Q ss_pred             CccccccccccCCCceEEEEEecCCcc-eeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVS-HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~-~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .++.-..++|..||.++|+.+.+.... .-.+.+|+.. +   .|....+ .+++..-+++|       .|.|++||+..
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G---~L~stSE-~v~gLe~~l~W-------rPsG~lIA~~q  275 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G---ELQSTSE-PVDGLEGALSW-------RPSGNLIASSQ  275 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c---eEEeccc-cCCCccCCccC-------CCCCCEEEEEE
Confidence            455778899999999999998743322 2344445443 2   4443333 55666677888       78999999986


Q ss_pred             C---CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769          217 M---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       217 ~---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v  293 (502)
                      .   ...|.+|.-+...                        .......+......|..|+||++ +.+||....|. |.+
T Consensus       276 ~~~~~~~VvFfErNGLr------------------------hgeF~l~~~~~~~~v~~l~Wn~d-s~iLAv~~~~~-vqL  329 (928)
T PF04762_consen  276 RLPDRHDVVFFERNGLR------------------------HGEFTLRFDPEEEKVIELAWNSD-SEILAVWLEDR-VQL  329 (928)
T ss_pred             EcCCCcEEEEEecCCcE------------------------eeeEecCCCCCCceeeEEEECCC-CCEEEEEecCC-ceE
Confidence            5   3456666644211                        11222222345678999999999 66888877655 999


Q ss_pred             EECCCCe--eeEEecc-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC----CCCC--------c-------------
Q 010769          294 WDVAAGK--CNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR----ISTH--------S-------------  345 (502)
Q Consensus       294 wd~~~~~--~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~----~~~~--------~-------------  345 (502)
                      |-..+-.  ..+.+.. ....+..+.|+|..+..|...+.+|.+..+++.    ....        .             
T Consensus       330 Wt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf  409 (928)
T PF04762_consen  330 WTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPF  409 (928)
T ss_pred             EEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecc
Confidence            9887653  2233321 234455699999988888888887777665432    1100        0             


Q ss_pred             ----------cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE----------EecCCC
Q 010769          346 ----------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT----------LHAHDK  405 (502)
Q Consensus       346 ----------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----------~~~h~~  405 (502)
                                .........|..++|++.+. .+++-..+|.|.+|........... .......          ......
T Consensus       410 ~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  487 (928)
T PF04762_consen  410 RRAVVPPPMSSYELELPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKNMWSVK-PPKLLSSISLDSMDISDSELPLG  487 (928)
T ss_pred             cccCCCchHhceEEcCCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCCccccc-Ccchhhhcccccccccccccccc
Confidence                      01123457799999999765 5888889999999986543211000 0011111          112244


Q ss_pred             CeeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCC-eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          406 AVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~d---g~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      .+..++|.... .+++....+   ..+.++++.... ...+.......+.+..+...+... .++.-..+|.+...+...
T Consensus       488 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~G~v~~~~~~~  565 (928)
T PF04762_consen  488 SLRQLAWLNDD-TLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSG-SLYIQTNDGKVFQLSSDG  565 (928)
T ss_pred             cEEEEEEeCCC-EEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCc-EEEEEECCCEEEEeecCC
Confidence            57788888765 555554443   568888875433 223333344456666666666655 355567788888666554


Q ss_pred             Cc
Q 010769          482 DA  483 (502)
Q Consensus       482 ~~  483 (502)
                      ..
T Consensus       566 ~~  567 (928)
T PF04762_consen  566 EL  567 (928)
T ss_pred             Cc
Confidence            43

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.5e-08  Score=92.23  Aligned_cols=220  Identities=15%  Similarity=0.179  Sum_probs=140.0

Q ss_pred             ccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769          261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  340 (502)
                      .+.+|...|.+|+|+|....+|..++.+.+|+|.|+.+..++..+..+ ..+++++|.-+..+++.+|-.+|.|.+||+|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            344788999999999996668999999999999999999999999877 8899999999998999999999999999999


Q ss_pred             CCCCccceE---eecCCeEEEEeCC------CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEE
Q 010769          341 ISTHSGFKW---AVAADVESLAWDP------HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS  411 (502)
Q Consensus       341 ~~~~~~~~~---~~~~~v~~v~~~p------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  411 (502)
                      .........   ....+|..++.-+      .+. +++....  .+..|.+......     ..++. .....+.+.+++
T Consensus       267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~-----~p~vl-ele~pG~cismq  337 (463)
T KOG1645|consen  267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAEC-----LPCVL-ELEPPGICISMQ  337 (463)
T ss_pred             CCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccC-----CCccc-ccCCCcceeeee
Confidence            876543222   1223444443322      222 3333322  2456665543211     11111 122356667777


Q ss_pred             EcCCCCCEEEEEeCCCc------EEE-EECCCCCeeEEEEecCC-CC---CE---EEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769          412 YNPLVPNLLATGSTDKM------VKL-WDLSNNQPSCIASRNPK-AG---AV---FSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       412 ~sp~~~~~l~t~s~dg~------i~v-wd~~~~~~~~~~~~~~~-~~---~v---~~~~~spd~~~llasg~~dg~i~vw  477 (502)
                      +.+....+|+|.-.+.+      |-+ -|...+.+.+.... .+ .+   ++   ..+.-.++..+++.+|+..+.+.+|
T Consensus       338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~-~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~  416 (463)
T KOG1645|consen  338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRR-TYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ  416 (463)
T ss_pred             ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecc-cccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence            77765566666554321      111 12233333322221 11 11   11   1222345667788888888899999


Q ss_pred             ECCCCccccccccC
Q 010769          478 DTLSDAGISNRFSK  491 (502)
Q Consensus       478 d~~~~~~~~~~~~~  491 (502)
                      |+.+.+.++++.-.
T Consensus       417 D~~s~evvQ~l~~~  430 (463)
T KOG1645|consen  417 DPHSFEVVQTLALS  430 (463)
T ss_pred             ccchhheeeecccC
Confidence            99999988765443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.92  E-value=9.6e-07  Score=83.55  Aligned_cols=175  Identities=14%  Similarity=0.119  Sum_probs=131.4

Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC-cEEEEeCCCCCCccceEeec
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~  352 (502)
                      |++-.+.+++..|. |...|.+...+-.++.  +|...|.-..+..++ .-++.|..|| .+-++|.+++.... ....-
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l  401 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL  401 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEE-eeCCc
Confidence            45545678888887 7788887665544432  466778888887777 5789999999 99999999876543 44556


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC----c
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----M  428 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg----~  428 (502)
                      +.|.++..+|+|. .++++.....|.++|+.++         .+...-....+-|+.+.|+|++ +++|-+--+|    .
T Consensus       402 g~I~av~vs~dGK-~~vvaNdr~el~vididng---------nv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~  470 (668)
T COG4946         402 GNIEAVKVSPDGK-KVVVANDRFELWVIDIDNG---------NVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQS  470 (668)
T ss_pred             cceEEEEEcCCCc-EEEEEcCceEEEEEEecCC---------CeeEecccccceeEEEEEcCCc-eeEEEecCcceeeee
Confidence            7899999999876 7888888899999999987         3444444566789999999998 8998876665    5


Q ss_pred             EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEE
Q 010769          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI  467 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llas  467 (502)
                      |+++|+..++..-+.+   ..+.=.+-+|.|+++||..-
T Consensus       471 Iklydm~~~Kiy~vTT---~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         471 IKLYDMDGGKIYDVTT---PTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             EEEEecCCCeEEEecC---CcccccCcccCCCCcEEEEE
Confidence            8999999987433333   33445667899999986543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=7.5e-09  Score=93.72  Aligned_cols=171  Identities=15%  Similarity=0.185  Sum_probs=122.4

Q ss_pred             EEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCC
Q 010769          316 AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ  395 (502)
Q Consensus       316 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  395 (502)
                      +|+-.-.-+-++.+.+..|.+-++.++-...  +...+.|.++.|...++ ++..|+.+|.|..+|+|......    ..
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--f~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~----~~  290 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--FQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGN----GW  290 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccccc--cccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCC----Cc
Confidence            5653322233566677888898988765443  44778899999988655 89999999999999999863211    23


Q ss_pred             ccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCCEEE--EEEcCCCCcEEEEEeCCC
Q 010769          396 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFS--VAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       396 ~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~--~~~spd~~~llasg~~dg  472 (502)
                      +... .-|.+.|+++..-.....+|++.+.+|+|++||++.-+. ..+.+..+|...-.-  +...+... .++++|.|.
T Consensus       291 ~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDc  368 (425)
T KOG2695|consen  291 CAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDC  368 (425)
T ss_pred             ceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCee
Confidence            3333 348999999987774448899999999999999997662 126777777543322  23345555 477799999


Q ss_pred             cEEEEECCCCccccccccCCCCC
Q 010769          473 KLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       473 ~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                      ..|||.+..+..+.+....+..+
T Consensus       369 ytRiWsl~~ghLl~tipf~~s~~  391 (425)
T KOG2695|consen  369 YTRIWSLDSGHLLCTIPFPYSAS  391 (425)
T ss_pred             EEEEEecccCceeeccCCCCccc
Confidence            99999999999988766555443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.89  E-value=2.8e-06  Score=80.48  Aligned_cols=198  Identities=14%  Similarity=0.163  Sum_probs=135.4

Q ss_pred             cccCCCceEEEEEecCCcceeEEEEEecCCCCCCceee----eeccccCCCcceeeeecCCCCCC-CCCCEEEEecCCCc
Q 010769          146 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYV----HHHIIIPAFPLCMAWLDCPLKDR-EKGNFMAVGSMEPA  220 (502)
Q Consensus       146 ~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~w~~~~~~~s-~~~~~la~g~~dg~  220 (502)
                      ..+.+|+.|+.....      .||.|+........|-.    ......+.+...+.++.   -|+ .+|+++|..+. |.
T Consensus       273 ~~nsDGkrIvFq~~G------dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyle---dfa~~~Gd~ia~VSR-Gk  342 (668)
T COG4946         273 NANSDGKRIVFQNAG------DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLE---DFAVVNGDYIALVSR-GK  342 (668)
T ss_pred             ccCCCCcEEEEecCC------cEEEeCCCcCcceeeecCCccccccccccccCHHHhhh---hhccCCCcEEEEEec-Cc
Confidence            345678888766533      89999987762222211    11122223333333332   123 36999998876 77


Q ss_pred             EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC-cEEEEECCCC
Q 010769          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK-QVKIWDVAAG  299 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg-~v~vwd~~~~  299 (502)
                      ..|.+...+-.+                             ..+|...|.-..+..+. .-++.|..|| .+-|+|..++
T Consensus       343 aFi~~~~~~~~i-----------------------------qv~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~  392 (668)
T COG4946         343 AFIMRPWDGYSI-----------------------------QVGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGG  392 (668)
T ss_pred             EEEECCCCCeeE-----------------------------EcCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCc
Confidence            777665322111                             12577778888888774 4788999999 8999999887


Q ss_pred             eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC----
Q 010769          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG----  375 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg----  375 (502)
                      +.. .+...-+.|.++..+++| .+++++.....|.+.|+.++.....-....+-|+.+.|+|++. +++-+--+|    
T Consensus       393 e~k-r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq  469 (668)
T COG4946         393 EVK-RIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQ  469 (668)
T ss_pred             eEE-EeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce-eEEEecCcceeee
Confidence            754 444567889999999999 8899999899999999999887665555667799999999876 666655444    


Q ss_pred             eEEEEECCCCC
Q 010769          376 TIKGFDIRTAK  386 (502)
Q Consensus       376 ~i~i~d~~~~~  386 (502)
                      .|++||+..++
T Consensus       470 ~Iklydm~~~K  480 (668)
T COG4946         470 SIKLYDMDGGK  480 (668)
T ss_pred             eEEEEecCCCe
Confidence            58888887643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=3.3e-08  Score=92.61  Aligned_cols=250  Identities=13%  Similarity=0.134  Sum_probs=166.3

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ..+++.+++.||.++.|.-...                        ........+..|...|.+++.+-+ +.+++|++.
T Consensus        19 ka~fiiqASlDGh~KFWkKs~i------------------------sGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d   73 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRI------------------------SGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVED   73 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCc------------------------cceeehhhhHHHHHHHHhhhcccc-ceeEeeccC
Confidence            4789999999999999964321                        112334455678899999999988 568888777


Q ss_pred             -CCcEEEEECCCCeeeEEecc--CCCCeEEEEEcCCCC--cEEEEEECCCcEEEEeCCCCCCcc--ceEeecCCeEEEEe
Q 010769          288 -DKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAW  360 (502)
Q Consensus       288 -Dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~v~~  360 (502)
                       |..++++|+.+-..+.-++.  -.+.+. +..++...  .+.++...++.+.++|-+...+..  ....|..+|.++.+
T Consensus        74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y  152 (558)
T KOG0882|consen   74 PDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY  152 (558)
T ss_pred             cccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence             99999999987654433321  122222 12222211  233344567899999988765433  23357889999999


Q ss_pred             CCCCCCEEEEEeCCCeEEEEECCCC-C-----CCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769          361 DPHAEHSFVVSLEDGTIKGFDIRTA-K-----SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       361 ~p~~~~~l~~~~~dg~i~i~d~~~~-~-----~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      +|.+. .+++....|.|..|..... +     .........-++.+.-......++.|+|++ ..+.+-+.|..|+++.+
T Consensus       153 ~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  153 NQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVF  230 (558)
T ss_pred             ecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEe
Confidence            99776 6888888999999998741 1     111111122233334455678999999998 88999999999999999


Q ss_pred             CCCCeeEEEE------------------------------ecCC-CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          435 SNNQPSCIAS------------------------------RNPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       435 ~~~~~~~~~~------------------------------~~~~-~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ++++......                              +..| ...-+.+.|...+.|||. |+-= .|+|.++.++.
T Consensus       231 KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly-~t~~-gikvin~~tn~  308 (558)
T KOG0882|consen  231 KTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY-GTIL-GIKVINLDTNT  308 (558)
T ss_pred             ccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe-ecce-eEEEEEeecCe
Confidence            8875311000                              0011 123456789999997554 4444 49999999988


Q ss_pred             cccc
Q 010769          484 GISN  487 (502)
Q Consensus       484 ~~~~  487 (502)
                      .++-
T Consensus       309 v~ri  312 (558)
T KOG0882|consen  309 VVRI  312 (558)
T ss_pred             EEEE
Confidence            7654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.87  E-value=7.6e-06  Score=75.73  Aligned_cols=220  Identities=14%  Similarity=0.099  Sum_probs=139.6

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec-CCCCcEEEEEe
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~sgs  286 (502)
                      ++.++++-...+.|..|+.......                          ...    .....++++. ++ + .|+.+.
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~--------------------------~~~----~~~~~G~~~~~~~-g-~l~v~~   58 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVE--------------------------VID----LPGPNGMAFDRPD-G-RLYVAD   58 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEE--------------------------EEE----SSSEEEEEEECTT-S-EEEEEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEE--------------------------EEe----cCCCceEEEEccC-C-EEEEEE
Confidence            6888888888899999998642110                          011    1126777777 55 4 555555


Q ss_pred             cCCcEEEEECCCCeeeEEecc-----CCCCeEEEEEcCCCCcEEEEEECC--------CcEEEEeCCCCCCccceEeecC
Q 010769          287 ADKQVKIWDVAAGKCNLTLEH-----HTDKVQAVAWNHHSPQILLSGSFD--------RSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~  353 (502)
                      .. .+.++|+.+++....+..     .....+.+++.++| ++.++....        |.|..++.. .+ .......-.
T Consensus        59 ~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~  134 (246)
T PF08450_consen   59 SG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLG  134 (246)
T ss_dssp             TT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEES
T ss_pred             cC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcc
Confidence            54 456669998865443332     34567899999999 677766544        456666666 33 333444456


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      ..+.++|+|++..++++-+..+.|..|++.........  ......+....+..-.+++..+| ++.++....+.|.+++
T Consensus       135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN--RRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFD  211 (246)
T ss_dssp             SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE--EEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEE
T ss_pred             cccceEECCcchheeecccccceeEEEeccccccceee--eeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEEC
Confidence            67899999998766667788999999999754110000  01111222222347889999988 7777777889999999


Q ss_pred             CCCCCeeEEEEecCCCCCEEEEEE-cCCCCcEEEEEe
Q 010769          434 LSNNQPSCIASRNPKAGAVFSVAF-SEDSPFVLAIGG  469 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~-spd~~~llasg~  469 (502)
                      .. ++........  ...+++++| -++...|++|..
T Consensus       212 p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  212 PD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             TT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEEB
T ss_pred             CC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEeC
Confidence            88 6644444443  347999999 467666676653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.84  E-value=8.3e-08  Score=97.37  Aligned_cols=186  Identities=15%  Similarity=0.211  Sum_probs=136.0

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ++..++.|+....+..+|+.+......                           ..-....|.-++.+   ..+|.+|..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---------------------------~~v~a~~v~imR~N---nr~lf~G~t  195 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRT---------------------------TNVSASGVTIMRYN---NRNLFCGDT  195 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeee---------------------------eeccCCceEEEEec---CcEEEeecc
Confidence            466677777777777888865322111                           11122236666554   348999999


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC---------CCcEEEEeCCCCCCccceEeecCCeEEE
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      .|+|.+-|+++.+.++++..|++.|..+..+  | ++|++++.         |..|+|||+|.-+..... .......-+
T Consensus       196 ~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~~P~fl  271 (1118)
T KOG1275|consen  196 RGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPYGPQFL  271 (1118)
T ss_pred             cceEEeecCCcCceeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCc-ccccCchhh
Confidence            9999999999999999999999999877664  5 78888876         456899999987765432 223334667


Q ss_pred             EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       359 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .|+|.-...+++.+..|...+.|..+....     ...+..+......+..+.+++++ ..|+.|..+|.|.+|-
T Consensus       272 rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP-----~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  272 RFHPSLTTRLAVTSQSGQFQFVDTATLSNP-----PAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             hhcccccceEEEEecccceeeccccccCCC-----ccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence            889987778999999999999995544210     12334444455669999999998 9999999999999997

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.84  E-value=7e-06  Score=81.23  Aligned_cols=228  Identities=15%  Similarity=0.139  Sum_probs=136.8

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee-EEecCCCCcEEEEEe
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~l~sgs  286 (502)
                      ++..+++++.+|.+..+|..+++.+.....                            ...+.+ ...  . ...++.++
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----------------------------~~~~~~~p~v--~-~~~v~v~~  152 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL----------------------------SSEVLSPPLV--A-NGLVVVRT  152 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeecc----------------------------CceeecCCEE--E-CCEEEEEC
Confidence            477888899999999999876554321100                            011111 111  1 23677788


Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeE-----EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecC---Ce--
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQ-----AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAA---DV--  355 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~-----~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~---~v--  355 (502)
                      .+|.|..||..+|+.+..+......+.     +....  + ..++.+..++.+..+|.++++..-... ....   .+  
T Consensus       153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~  229 (377)
T TIGR03300       153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER  229 (377)
T ss_pred             CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence            899999999999998877654322111     11111  2 357778888999999998876432110 0000   00  


Q ss_pred             -EEEEeCC--CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          356 -ESLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       356 -~~v~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                       ..+.-+|  .+ ..+++++.+|.++.||..++         +.++.....  ........  + ..+++++.+|.|..+
T Consensus       230 ~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG---------~~~W~~~~~--~~~~p~~~--~-~~vyv~~~~G~l~~~  294 (377)
T TIGR03300       230 LVDVDGDPVVDG-GQVYAVSYQGRVAALDLRSG---------RVLWKRDAS--SYQGPAVD--D-NRLYVTDADGVVVAL  294 (377)
T ss_pred             hhccCCccEEEC-CEEEEEEcCCEEEEEECCCC---------cEEEeeccC--CccCceEe--C-CEEEEECCCCeEEEE
Confidence             0000011  12 36788888999999999887         445544421  11222222  3 678888899999999


Q ss_pred             ECCCCCeeEEEEecC-CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          433 DLSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       433 d~~~~~~~~~~~~~~-~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |..+++.  +..... ......+...  .+. .|++++.+|.|+++|..+++.+.+..
T Consensus       295 d~~tG~~--~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       295 DRRSGSE--LWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             ECCCCcE--EEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            9998873  333311 1111222222  244 47778999999999999998876544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.83  E-value=8.3e-08  Score=88.92  Aligned_cols=160  Identities=15%  Similarity=0.212  Sum_probs=108.0

Q ss_pred             EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc---eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 010769          314 AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD  390 (502)
Q Consensus       314 ~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  390 (502)
                      .+..++.+ .+++++..+....+++++.......   ........+++.|..... ...++..-|-++-+|+-...    
T Consensus        67 ~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~----  140 (390)
T KOG3914|consen   67 LVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSAD----  140 (390)
T ss_pred             ccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeeccc----
Confidence            34455555 7777777777776777665443111   112233344555544433 34444444545555544321    


Q ss_pred             CCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769          391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       391 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~llasg~  469 (502)
                         ..+...+.+|-+.++.++|+|++ .+|+|+..|..|++-.+....  .+.. .-+|...|..++.-++.  +|++||
T Consensus       141 ---~~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f--~IesfclGH~eFVS~isl~~~~--~LlS~s  212 (390)
T KOG3914|consen  141 ---SGRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATF--VIESFCLGHKEFVSTISLTDNY--LLLSGS  212 (390)
T ss_pred             ---ccCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCccc--chhhhccccHhheeeeeeccCc--eeeecC
Confidence               13345567899999999999998 999999999999998776543  2222 34689999999998876  488999


Q ss_pred             CCCcEEEEECCCCccccc
Q 010769          470 SKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       470 ~dg~i~vwd~~~~~~~~~  487 (502)
                      .|++|++||+.+++++..
T Consensus       213 GD~tlr~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  213 GDKTLRLWDITSGKLLDT  230 (390)
T ss_pred             CCCcEEEEecccCCcccc
Confidence            999999999999998844

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.83  E-value=1.8e-08  Score=87.90  Aligned_cols=199  Identities=18%  Similarity=0.209  Sum_probs=123.3

Q ss_pred             eeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeE------------EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 010769          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL------------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM  336 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~------------~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  336 (502)
                      |+.+.+..+  ..|+++..++.+.....-++.+..            .+..|+++-.+-..+-.+ +-+++++.||.+.+
T Consensus        39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAV  115 (319)
T ss_pred             EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC-CceEecCCCceEEE
Confidence            566666655  478888888777776655444332            222233322222222233 56899999999999


Q ss_pred             EeCCCCCCccceEe-ecCCeEEEEeCCCCCCEEEEEe-----CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEE
Q 010769          337 KDARISTHSGFKWA-VAADVESLAWDPHAEHSFVVSL-----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI  410 (502)
Q Consensus       337 wd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  410 (502)
                      ++.+.-........ ......+.+....+. ++.++.     .-+..+.|+++...        ........- ..|+++
T Consensus       116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~--------t~~~~~~~~-~~v~~l  185 (319)
T KOG4714|consen  116 FSTDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIK--------TLIPSKKAL-DAVTAL  185 (319)
T ss_pred             EechHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccc--------ccccccccc-ccchhh
Confidence            99876211111110 011111222222222 232221     22345566665431        122222222 339999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          411 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      +-+|...+++++|+.||.+.+||+++.. .....+..|..+|+.+.|+|..+--|.+++.||.+..||.++
T Consensus       186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  186 CSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            9999887899999999999999999874 345566789999999999998766688999999999999875

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2.8e-08  Score=93.10  Aligned_cols=212  Identities=17%  Similarity=0.133  Sum_probs=153.6

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCC--C-eeeEEeccCCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEeC
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--G-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDA  339 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~--~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~  339 (502)
                      -|.+.|+.+.-...  .++++++.||.++.|.-..  + ..+..+..|-..|.+++.+.++ .++.|++. |..++++|+
T Consensus         7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEe
Confidence            48888888876654  6999999999999998543  1 3445567788899999999998 88888777 999999999


Q ss_pred             CCCCCccceEeecCCeEEEEe--CCCCC--CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          340 RISTHSGFKWAVAADVESLAW--DPHAE--HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~v~~--~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      ..-..... .....-...+.|  +|...  .+.+....+|.+.++|-+...+       +....-.-|..+|.++.++|.
T Consensus        84 En~Dminm-iKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q~~~fkklH~sPV~~i~y~qa  155 (558)
T KOG0882|consen   84 ENFDMINM-IKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------QDGYFKKLHFSPVKKIRYNQA  155 (558)
T ss_pred             eccchhhh-cccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------ccceecccccCceEEEEeecc
Confidence            87665431 111111222233  22111  2333345789999999887632       455666779999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEECCC-CC-e-----------eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          416 VPNLLATGSTDKMVKLWDLSN-NQ-P-----------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~-~~-~-----------~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      + ..+++....|.|.-|.... .+ |           .-+..+....+...++.|+|++.. +++-+.|..|+++.+.++
T Consensus       156 ~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtG  233 (558)
T KOG0882|consen  156 G-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTG  233 (558)
T ss_pred             c-cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccc
Confidence            8 8888888899999998873 00 0           012222334456789999999995 888889999999999999


Q ss_pred             cccccc
Q 010769          483 AGISNR  488 (502)
Q Consensus       483 ~~~~~~  488 (502)
                      +.++.+
T Consensus       234 klvqei  239 (558)
T KOG0882|consen  234 KLVQEI  239 (558)
T ss_pred             hhhhhh
Confidence            987654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=1.4e-08  Score=92.01  Aligned_cols=176  Identities=18%  Similarity=0.263  Sum_probs=125.8

Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC----CCccce
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS----THSGFK  348 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~  348 (502)
                      +|+-+-..+-++.+.+..|-+-++.+|.. +.|. ..+.|.++.|+..+ ++++.|..+|.|..+|+|..    .-....
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            66543222335667778899999988753 3444 57789999999877 89999999999999999976    334456


Q ss_pred             EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEE--EcCCCCCEEEEEeCC
Q 010769          349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS--YNPLVPNLLATGSTD  426 (502)
Q Consensus       349 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~sp~~~~~l~t~s~d  426 (502)
                      .-|.+.|+++..-.....++++++.+|.|.+||+|..+.      ...+.+..+|-..-.-+-  ..+.. ..+++++.|
T Consensus       295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdD  367 (425)
T KOG2695|consen  295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------KKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDD  367 (425)
T ss_pred             EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------ccceeeeeccccccccccccccccc-ceEEEccCe
Confidence            678899999987764556899999999999999998632      234777788865433332  33433 788889999


Q ss_pred             CcEEEEECCCCCeeEEEEecCC--CCCEEEEEEc
Q 010769          427 KMVKLWDLSNNQPSCIASRNPK--AGAVFSVAFS  458 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~s  458 (502)
                      ...+||.+..+...+...+...  ...+.+++|.
T Consensus       368 cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  368 CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             eEEEEEecccCceeeccCCCCccccccccceehh
Confidence            9999999999984433333221  1235556664

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=4.9e-06  Score=82.69  Aligned_cols=192  Identities=9%  Similarity=0.019  Sum_probs=112.4

Q ss_pred             CCCCCCCE-EEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC
Q 010769          204 KDREKGNF-MAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       204 ~~s~~~~~-la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                      .|+|+|+. ++..+..   ..|.++|+.++...                         .   +....+.+....|+|++.
T Consensus       194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-------------------------~---lt~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-------------------------K---IASSQGMLVVSDVSKDGS  245 (419)
T ss_pred             EECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-------------------------E---EecCCCcEEeeEECCCCC
Confidence            34899984 6654433   56888887643210                         0   111234455678999977


Q ss_pred             cEEEEEecC--CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEeCCCCCCccceEeecCCe
Q 010769          280 NILASASAD--KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADV  355 (502)
Q Consensus       280 ~~l~sgs~D--g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v  355 (502)
                      .++++.+.+  ..|.++++.+++. ..+..+........|+|+|..++++....+  .|.+.|+.++........  +. 
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-  321 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-  321 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-
Confidence            666666555  4577778877764 344434433455689999966666655544  577777776654332221  11 


Q ss_pred             EEEEeCCCCCCEEEEEeCC--------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769          356 ESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      ....|+|++..+++++...        ..|.+.|+.++.          ...+... .......|+|+|..++++....+
T Consensus       322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----------~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~  390 (419)
T PRK04043        322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----------IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGN  390 (419)
T ss_pred             cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----------eEECCCC-CCcCCeEECCCCCEEEEEEccCC
Confidence            1248999998666666543        367888887652          2223222 23346889999944444433333


Q ss_pred             --cEEEEECCCCC
Q 010769          428 --MVKLWDLSNNQ  438 (502)
Q Consensus       428 --~i~vwd~~~~~  438 (502)
                        .+.+.++....
T Consensus       391 ~~~L~~~~l~g~~  403 (419)
T PRK04043        391 QSALGIIRLNYNK  403 (419)
T ss_pred             cEEEEEEecCCCe
Confidence              35666766543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.79  E-value=7.1e-06  Score=81.21  Aligned_cols=259  Identities=12%  Similarity=0.113  Sum_probs=144.7

Q ss_pred             CCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCC
Q 010769          150 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI  229 (502)
Q Consensus       150 ~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~  229 (502)
                      ++..+++++.++     .+|.++...+   .+.-.+.  ++..+.+.      +.  -.+..+++++.+|.|..||..++
T Consensus       104 ~~~~v~v~~~~g-----~l~ald~~tG---~~~W~~~--~~~~~~~~------p~--v~~~~v~v~~~~g~l~a~d~~tG  165 (377)
T TIGR03300       104 DGGLVFVGTEKG-----EVIALDAEDG---KELWRAK--LSSEVLSP------PL--VANGLVVVRTNDGRLTALDAATG  165 (377)
T ss_pred             cCCEEEEEcCCC-----EEEEEECCCC---cEeeeec--cCceeecC------CE--EECCEEEEECCCCeEEEEEcCCC
Confidence            456677776666     7788876554   2221111  11111110      00  12557777888999999999765


Q ss_pred             CCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCC
Q 010769          230 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT  309 (502)
Q Consensus       230 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~  309 (502)
                      +.+.....                  ............+    ... +  ..++.++.++.+..+|+.+|+.+.......
T Consensus       166 ~~~W~~~~------------------~~~~~~~~~~~sp----~~~-~--~~v~~~~~~g~v~ald~~tG~~~W~~~~~~  220 (377)
T TIGR03300       166 ERLWTYSR------------------VTPALTLRGSASP----VIA-D--GGVLVGFAGGKLVALDLQTGQPLWEQRVAL  220 (377)
T ss_pred             ceeeEEcc------------------CCCceeecCCCCC----EEE-C--CEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence            54322110                  0000000011111    111 2  267788888999999999998765543110


Q ss_pred             C----C------e-EEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC-CeEEEEeCCCCCCEEEEEeCCCeE
Q 010769          310 D----K------V-QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA-DVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       310 ~----~------v-~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~l~~~~~dg~i  377 (502)
                      .    .      + .+..+  .+ ..+++++.+|.+..||..+++..   |.... .......  .+ ..+++++.+|.|
T Consensus       221 ~~g~~~~~~~~~~~~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~---W~~~~~~~~~p~~--~~-~~vyv~~~~G~l  291 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVV--DG-GQVYAVSYQGRVAALDLRSGRVL---WKRDASSYQGPAV--DD-NRLYVTDADGVV  291 (377)
T ss_pred             CCCCCchhhhhccCCccEE--EC-CEEEEEEcCCEEEEEECCCCcEE---EeeccCCccCceE--eC-CEEEEECCCCeE
Confidence            0    0      0 01111  13 46777888999999999877543   22211 1111222  23 367888899999


Q ss_pred             EEEECCCCCCCCCCCCCCccEEEecC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE-EE
Q 010769          378 KGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF-SV  455 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~  455 (502)
                      +.+|..++         ..++..... .....+....  + ..|++++.+|.|+++|..+++.  +.....+...+. +.
T Consensus       292 ~~~d~~tG---------~~~W~~~~~~~~~~ssp~i~--g-~~l~~~~~~G~l~~~d~~tG~~--~~~~~~~~~~~~~sp  357 (377)
T TIGR03300       292 VALDRRSG---------SELWKNDELKYRQLTAPAVV--G-GYLVVGDFEGYLHWLSREDGSF--VARLKTDGSGIASPP  357 (377)
T ss_pred             EEEECCCC---------cEEEccccccCCccccCEEE--C-CEEEEEeCCCEEEEEECCCCCE--EEEEEcCCCccccCC
Confidence            99999887         444444221 1222222232  3 6888999999999999999884  444444443332 22


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEE
Q 010769          456 AFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       456 ~~spd~~~llasg~~dg~i~vw  477 (502)
                      .+. ++.  |..++.||.|+.|
T Consensus       358 ~~~-~~~--l~v~~~dG~l~~~  376 (377)
T TIGR03300       358 VVV-GDG--LLVQTRDGDLYAF  376 (377)
T ss_pred             EEE-CCE--EEEEeCCceEEEe
Confidence            333 343  5667889988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.77  E-value=5.8e-09  Score=101.74  Aligned_cols=245  Identities=22%  Similarity=0.287  Sum_probs=154.6

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      -|++|..     ..+.-.+++|..+|.|.+-.+....                         ........+|...+++++
T Consensus        60 kcva~~y-----~~d~cIlavG~atG~I~l~s~r~~h-------------------------dSs~E~tp~~ar~Ct~lA  109 (783)
T KOG1008|consen   60 KCVASFY-----GNDRCILAVGSATGNISLLSVRHPH-------------------------DSSAEVTPGYARPCTSLA  109 (783)
T ss_pred             eeehhhc-----CCchhhhhhccccCceEEeecCCcc-------------------------cccceecccccccccccc
Confidence            4777631     2345689999999999998774311                         111122346889999999


Q ss_pred             ecCCCCcEEEEEe----cCCcEEEEECCCC--eee--EEecc-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          274 WNKEFRNILASAS----ADKQVKIWDVAAG--KCN--LTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       274 ~~~~~~~~l~sgs----~Dg~v~vwd~~~~--~~~--~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      |++-..+.||.|-    .|..+.|||+.++  .+.  ..|.+ .-....+++|-.+. .++++|...+.+.++|+|....
T Consensus       110 wneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~  188 (783)
T KOG1008|consen  110 WNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLD  188 (783)
T ss_pred             cccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhh
Confidence            9998778888873    3668999999876  222  22222 33456689999666 8899999999999999995332


Q ss_pred             ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEE-CCCCCCCCCCCCCCccEEEecCC----CCeeEEEEcCCCCCE
Q 010769          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNL  419 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~sp~~~~~  419 (502)
                      .. ..-....+..+...|..++++++. .+|.|.+|| .++.        ..++..+....    ..+..++|+|..+.+
T Consensus       189 ~~-~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rni--------enpl~~i~~~~N~~~~~l~~~aycPtrtgl  258 (783)
T KOG1008|consen  189 SV-SSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNI--------ENPLQIILRNENKKPKQLFALAYCPTRTGL  258 (783)
T ss_pred             hh-hhhhhhhcccceecCCCCCceecc-ccCceeeccchhhh--------ccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence            21 111222455566777656555554 499999999 4544        23333333222    348999999988788


Q ss_pred             EEEEeCC-CcEEEEECCCC--------CeeEEEE----ecCC--CCCEEEEEEcCCCC-cEEEEEeCCCcEEEEEC
Q 010769          420 LATGSTD-KMVKLWDLSNN--------QPSCIAS----RNPK--AGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       420 l~t~s~d-g~i~vwd~~~~--------~~~~~~~----~~~~--~~~v~~~~~spd~~-~llasg~~dg~i~vwd~  479 (502)
                      +++.+.| ++|+++++...        .+.....    +.+.  -..|.++.|++..+ ....++-..-++.-+++
T Consensus       259 la~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V  334 (783)
T KOG1008|consen  259 LAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV  334 (783)
T ss_pred             hhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence            8888875 67999998642        1111111    2222  25688888887652 12333444444444444

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=1.4e-07  Score=93.22  Aligned_cols=199  Identities=18%  Similarity=0.267  Sum_probs=141.3

Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe---------------eeEEeccCCCCeEEEEEcCCCCcEEEEEEC
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK---------------CNLTLEHHTDKVQAVAWNHHSPQILLSGSF  330 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~---------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  330 (502)
                      .....|++|+.. ..++|+|+.||.++|..+.+..               .-+++.+|+..|.-+.|+... +.|.++..
T Consensus        14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt   91 (1189)
T KOG2041|consen   14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDT   91 (1189)
T ss_pred             CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCC
Confidence            356889999998 6699999999999999876431               124567999999999999988 88999999


Q ss_pred             CCcEEEEeCCCCCCccc--eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCee
Q 010769          331 DRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  408 (502)
Q Consensus       331 dg~i~vwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~  408 (502)
                      +|.|.+|-+-.++-...  .....+-|.+++|+.+|. .+.....||.|.+=.+...          .++..........
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGN----------RIwgKeLkg~~l~  160 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGN----------RIWGKELKGQLLA  160 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccc----------eecchhcchhecc
Confidence            99999999876653221  224456789999999876 6888888998877666532          2332222233455


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCC-----eeEEEE----ecCCCCCEEEEEEc--------CCCCcEEEEEeCC
Q 010769          409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQ-----PSCIAS----RNPKAGAVFSVAFS--------EDSPFVLAIGGSK  471 (502)
Q Consensus       409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~-----~~~~~~----~~~~~~~v~~~~~s--------pd~~~llasg~~d  471 (502)
                      .+.|+++. ..++.+-..|.+.+||...+-     ..+...    +......|..+.|.        |+.+ .||.+-.+
T Consensus       161 hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~n  238 (1189)
T KOG2041|consen  161 HVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYAN  238 (1189)
T ss_pred             ceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcC
Confidence            78899987 777777778999999976531     112111    11112235566663        5777 68888888


Q ss_pred             CcEEEEEC
Q 010769          472 GKLEIWDT  479 (502)
Q Consensus       472 g~i~vwd~  479 (502)
                      |.+.|-.-
T Consensus       239 Gr~QiMR~  246 (1189)
T KOG2041|consen  239 GRMQIMRS  246 (1189)
T ss_pred             ceehhhhh
Confidence            88776543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.71  E-value=4.4e-05  Score=73.00  Aligned_cols=242  Identities=11%  Similarity=0.092  Sum_probs=130.7

Q ss_pred             cccCCCceEEEEEe---------cCCcceeEEEEEecCCCCCCceeeeeccccCCCccee-eeecCCCCCCCCCCEEEEe
Q 010769          146 TINPNDAVIVCARN---------EDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCM-AWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       146 ~~~p~~~~l~~~~~---------~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~w~~~~~~~s~~~~~la~g  215 (502)
                      .++|+++.|.++..         +.+  .+.|  |+...     +..-+++.++.-|-.. .-.+..++++|+|++|.+.
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d--~V~v--~D~~t-----~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~  122 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTD--YVEV--IDPQT-----HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY  122 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCC--EEEE--EECcc-----CcEEeEEccCCCchhhccCccceEEECCCCCEEEEe
Confidence            39999999988887         443  3444  44443     2334444444333200 0011123348999999987


Q ss_pred             cC--CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769          216 SM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       216 ~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v  293 (502)
                      ..  +..|.|.|+.....+....+                            .+...-...++. .++  +-+.||....
T Consensus       123 n~~p~~~V~VvD~~~~kvv~ei~v----------------------------p~~~~vy~t~e~-~~~--~~~~Dg~~~~  171 (352)
T TIGR02658       123 QFSPSPAVGVVDLEGKAFVRMMDV----------------------------PDCYHIFPTAND-TFF--MHCRDGSLAK  171 (352)
T ss_pred             cCCCCCEEEEEECCCCcEEEEEeC----------------------------CCCcEEEEecCC-ccE--EEeecCceEE
Confidence            74  58999999976433322111                            111111112221 111  2234444444


Q ss_pred             EECCC-Cee-eEE---eccCCCCeEEE-EEcC-CCCcEEEEEECCCcEEEEeCCCCCCcc-ceEe-----------ecCC
Q 010769          294 WDVAA-GKC-NLT---LEHHTDKVQAV-AWNH-HSPQILLSGSFDRSVVMKDARISTHSG-FKWA-----------VAAD  354 (502)
Q Consensus       294 wd~~~-~~~-~~~---~~~h~~~v~~l-~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~-----------~~~~  354 (502)
                      ..+.. |+. ..+   |..-..++..- .|.+ ++ ..+.+... |+|.+.|+....... ..+.           ..+.
T Consensus       172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g  249 (352)
T TIGR02658       172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG  249 (352)
T ss_pred             EEecCCCceEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence            33321 221 111   11100011000 3455 55 55655555 999999975433211 1111           1233


Q ss_pred             eEEEEeCCCCCCEEEEEe---------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-
Q 010769          355 VESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-  424 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-  424 (502)
                      ..-++++|++..+++...         ..+.|.++|..+.         +.+..+.. ...+..++++|++..+|++.. 
T Consensus       250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~  319 (352)
T TIGR02658       250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------KRLRKIEL-GHEIDSINVSQDAKPLLYALST  319 (352)
T ss_pred             ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------eEEEEEeC-CCceeeEEECCCCCeEEEEeCC
Confidence            445999998875555342         2257999999886         56666553 457899999999842666554 


Q ss_pred             CCCcEEEEECCCCCe
Q 010769          425 TDKMVKLWDLSNNQP  439 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~  439 (502)
                      .++.|.++|..+.+.
T Consensus       320 ~s~~VsViD~~t~k~  334 (352)
T TIGR02658       320 GDKTLYIFDAETGKE  334 (352)
T ss_pred             CCCcEEEEECcCCeE
Confidence            688899999999873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.70  E-value=4.9e-07  Score=91.97  Aligned_cols=183  Identities=17%  Similarity=0.242  Sum_probs=139.6

Q ss_pred             CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEE
Q 010769          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL  358 (502)
Q Consensus       279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v  358 (502)
                      +..++.|+.-..+..+|+++.+..+......+.|+-++.+.   +++.+|...|+|.+-|.++.+.+.....|.+.+..+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nn---r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNN---RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecC---cEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            34677888888899999999888777765555677666543   789999999999999999999888888899888877


Q ss_pred             EeCCCCCCEEEEEeC---------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          359 AWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       359 ~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ...  |. ++++++.         |..|++||+|+.         +.+..+.-+.++ .-+.|+|.-...+++++..|..
T Consensus       224 Dv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmm---------ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~  290 (1118)
T KOG1275|consen  224 DVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMM---------RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF  290 (1118)
T ss_pred             ecc--CC-eEEEeecccccccccccchhhhhhhhhh---------hccCCcccccCc-hhhhhcccccceEEEEecccce
Confidence            665  34 5666553         556899999987         333333334443 5578888877889999999999


Q ss_pred             EEEE---CCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          430 KLWD---LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       430 ~vwd---~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      .+-|   +.+.. ..+.........+.++.+++++. .||.|..+|.|.+|--
T Consensus       291 q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  291 QFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             eeccccccCCCc-cceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence            9999   43332 23444555555699999999999 5999999999999983

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=1.4e-07  Score=90.47  Aligned_cols=232  Identities=16%  Similarity=0.268  Sum_probs=144.4

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      .+.+-+++++.|.+|++|.+.....                    ..+.......+..|+.+|.++.|..+.+ +++  |
T Consensus       745 dNENSFiSASkDKTVKLWSik~EgD--------------------~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~--S  801 (1034)
T KOG4190|consen  745 DNENSFISASKDKTVKLWSIKPEGD--------------------EIGTSACQFTYQAHKKPIHDIGFLADLR-SIA--S  801 (1034)
T ss_pred             ccccceeeccCCceEEEEEeccccC--------------------ccccceeeeEhhhccCcccceeeeeccc-eee--e
Confidence            3577889999999999999864211                    1122334566778999999999998833 454  5


Q ss_pred             cCCcEEEEECCCCeeeEEecc--CCCCeEEEEEcCC-CCcEEEEE-ECCCcEEEEeCCCCCCccceEe-----ecCCeEE
Q 010769          287 ADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH-SPQILLSG-SFDRSVVMKDARISTHSGFKWA-----VAADVES  357 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~-~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~  357 (502)
                      .||.|.+||.-.++++..+..  ..+.+..+..-+. ...++++| +...+|+++|.|...-......     ...-+.+
T Consensus       802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence            689999999888877664421  1223333333333 22444444 7789999999998765432221     2345789


Q ss_pred             EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEE-EECCC
Q 010769          358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL-WDLSN  436 (502)
Q Consensus       358 v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v-wd~~~  436 (502)
                      ++..+.|. .++++-.+|+|.+.|.|++         +.+..+.........++ .|.. ..|+....|.++.| |-.-.
T Consensus       882 iaVa~~GN-~lAa~LSnGci~~LDaR~G---------~vINswrpmecdllqla-apsd-q~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  882 IAVADKGN-KLAAALSNGCIAILDARNG---------KVINSWRPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             EEeccCcc-hhhHHhcCCcEEEEecCCC---------ceeccCCcccchhhhhc-Cchh-HHHHhhcccceeEeeehhcC
Confidence            99998765 7999999999999999998         33333333222233332 2333 67777777888888 87666


Q ss_pred             CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      +.  ...+..+...+..-+  -.-|+. |+++.....+.||-
T Consensus       950 gi--mh~q~kpppepahfl--qsvgpS-LV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  950 GI--MHLQDKPPPEPAHFL--QSVGPS-LVTAQNGNILGVYA  986 (1034)
T ss_pred             Ce--eeeccCCCCcchhhh--hccCce-eEEeccCcEEEEEe
Confidence            54  223332222221111  122443 55565556677774

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.66  E-value=5.7e-06  Score=79.17  Aligned_cols=233  Identities=11%  Similarity=0.153  Sum_probs=150.4

Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      ..+||.|.+|++.... -|.+|.-.....+..                            ..| ..|..+.|+|. +++|
T Consensus        38 ~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~----------------------------~~~-~~V~~~~fSP~-~kYL   86 (561)
T COG5354          38 VSESPLGTYLFSEHAA-GVECWGGPSKAKLVR----------------------------FRH-PDVKYLDFSPN-EKYL   86 (561)
T ss_pred             eeecCcchheehhhcc-ceEEccccchhheee----------------------------eec-CCceecccCcc-ccee
Confidence            3348999999998764 577998764332111                            124 45889999999 6788


Q ss_pred             EEEecCC---------------cEEEEECCCCeeeEEeccCCCC--eE-EEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          283 ASASADK---------------QVKIWDVAAGKCNLTLEHHTDK--VQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       283 ~sgs~Dg---------------~v~vwd~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      .+-+.-+               .+++||+.++..+..+..-..+  .+ -+.|+-+. .+++-. ....++|+++ +...
T Consensus        87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~  163 (561)
T COG5354          87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNI  163 (561)
T ss_pred             eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCcc
Confidence            8865543               4999999999999999766555  45 67888877 554443 4567999997 3332


Q ss_pred             cc-ceEee-cCCeEEEEeCCCCCC-EEEE-----EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          345 SG-FKWAV-AADVESLAWDPHAEH-SFVV-----SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       345 ~~-~~~~~-~~~v~~v~~~p~~~~-~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      .. ..... ...+....|+|.+.+ .|+.     ....+.+++|.+...         ..+.+..-..-.-..+.|++.|
T Consensus       164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~---------s~l~tk~lfk~~~~qLkW~~~g  234 (561)
T COG5354         164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN---------SVLVTKNLFKVSGVQLKWQVLG  234 (561)
T ss_pred             ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC---------CeeeeeeeEeecccEEEEecCC
Confidence            21 11111 356888889986432 2222     356778999988754         3333332223334567888887


Q ss_pred             CCEEEE-Ee----------CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCC
Q 010769          417 PNLLAT-GS----------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       417 ~~~l~t-~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~-llasg~~dg~i~vwd~~~~  482 (502)
                       .+|+. .-          ....++|++++...  +... ....++|..++|.|.++. .+++|-....+.++|++.+
T Consensus       235 -~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~--i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         235 -KYLLVLVMTHTKSNKSYFGESNLYLLRITERS--IPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             -ceEEEEEEEeeecccceeccceEEEEeecccc--ccee-ccccccceeeeecccCCceeEEecccccceeecccccc
Confidence             44332 11          12457888887544  1112 145689999999998753 3444456788999999876

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=1.2e-06  Score=88.22  Aligned_cols=186  Identities=18%  Similarity=0.193  Sum_probs=133.7

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      ..+.+.|++++.   ..|+-|+.+|.|++++... .+ .+...|+..      ...| .++++|+.||+|.|..+-+.+.
T Consensus        38 ~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   38 QNDAISCCAVHD---KFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhhHHHHHHhhc---ceeeeccccceEEEEecCC-cc-ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCcc
Confidence            357788888874   4899999999999999653 33 333345543      4456 8999999999999999887765


Q ss_pred             ccceEeecCCeEEEEeCCC----CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769          345 SGFKWAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~p~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      .. ......++.+++++|+    ....|++|+..| +.++.-+-...       +....+....++|.++.|..   +++
T Consensus       106 ~~-~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i~W~g---~lI  173 (846)
T KOG2066|consen  106 IT-QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSIKWRG---NLI  173 (846)
T ss_pred             ce-eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEEEecC---cEE
Confidence            54 5677788999999997    344799999998 77776543311       22224666789999999993   788


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCC------CEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAG------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~------~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      |=++.+| |+|||+.+.+..  ........      ....+.|.++.+  |+. |...+|+|..++
T Consensus       174 AWand~G-v~vyd~~~~~~l--~~i~~p~~~~R~e~fpphl~W~~~~~--LVI-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  174 AWANDDG-VKVYDTPTRQRL--TNIPPPSQSVRPELFPPHLHWQDEDR--LVI-GWGDSVKICSIK  233 (846)
T ss_pred             EEecCCC-cEEEecccccee--eccCCCCCCCCcccCCCceEecCCCe--EEE-ecCCeEEEEEEe
Confidence            8888777 999999987632  22221112      234688988876  444 445579999988

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.60  E-value=5.4e-05  Score=70.02  Aligned_cols=198  Identities=12%  Similarity=0.135  Sum_probs=126.8

Q ss_pred             eEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEc-CCCCcEEEEEECCCcEEEEeCCCCCCccceE
Q 010769          271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-HHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  349 (502)
                      ++.|.+..+.++++-...+.|..|+..+++... +... . ...+.+. +++  .|+.+...+ +.++|..+++......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDG--RLYVADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTS--EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCC--EEEEEEcCc-eEEEecCCCcEEEEee
Confidence            568888546677777788999999998876543 2211 2 6777777 554  455555544 5556988775543333


Q ss_pred             e-----ecCCeEEEEeCCCCCCEEEEEeCC--------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          350 A-----VAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       350 ~-----~~~~v~~v~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      .     .....+.+++.|+|. ++++....        |.|..++.. .         . +..+...-...+.|+|+|++
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~---------~-~~~~~~~~~~pNGi~~s~dg  145 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G---------K-VTVVADGLGFPNGIAFSPDG  145 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S---------E-EEEEEEEESSEEEEEEETTS
T ss_pred             ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C---------e-EEEEecCcccccceEECCcc
Confidence            2     223478899999876 55554432        557777776 3         2 22222234557899999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCe-----eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          417 PNLLATGSTDKMVKLWDLSNNQP-----SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..++++-+..+.|..|++.....     .....+....+..-.+++..+|. +.++....+.|.+++.. ++.+..+
T Consensus       146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i  220 (246)
T PF08450_consen  146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREI  220 (246)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred             hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEE
Confidence            44556777888899999864321     12223333334588999999998 67777778899999987 6665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.60  E-value=0.0001  Score=72.69  Aligned_cols=113  Identities=19%  Similarity=0.262  Sum_probs=83.5

Q ss_pred             ceeeEEecCCCCcEEEEE----ecCCc----EEEEECCCCee----eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 010769          268 SVLGLAWNKEFRNILASA----SADKQ----VKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVV  335 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sg----s~Dg~----v~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  335 (502)
                      ...++.|+...++.+.+.    +.+|.    -++|++..++.    +.++ .....|.|++++|+. ..|+.|+.||+|.
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E-~kLvlGC~DgSii  284 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSE-DKLVLGCEDGSII  284 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCccc-ceEEEEecCCeEE
Confidence            346777876556666654    33443    34677665532    2222 367899999999999 8899999999999


Q ss_pred             EEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCC
Q 010769          336 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       336 vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~  385 (502)
                      +||...+...  .....-.++.++|+|+|. +|++|+..|.+.+||+.-.
T Consensus       285 LyD~~~~~t~--~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEcCCCeee--eeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecC
Confidence            9999876433  334455678999999876 8999999999999998755

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.59  E-value=1.5e-08  Score=98.97  Aligned_cols=203  Identities=21%  Similarity=0.253  Sum_probs=139.8

Q ss_pred             ccceeeEEecCCC-CcEEEEEecCCcEEEEECCCCee--eEEeccCCCCeEEEEEcCCCCcEEEEEE----CCCcEEEEe
Q 010769          266 TDSVLGLAWNKEF-RNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGS----FDRSVVMKD  338 (502)
Q Consensus       266 ~~~V~~l~~~~~~-~~~l~sgs~Dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~----~dg~i~vwd  338 (502)
                      ...+.|++++-+. +.+++.|..+|.|.+-.++...-  .....+|...+++++|++-..+.|++|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            4557788776543 36899999999999988765432  2334568889999999998767777763    356799999


Q ss_pred             CCCCCC----ccceE-eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEc
Q 010769          339 ARISTH----SGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN  413 (502)
Q Consensus       339 ~~~~~~----~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  413 (502)
                      +.+.-.    ...+. .......+++|..+ ..++++|.....+.++|+|..          ........+..+..+...
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs----------~~~~~svnTk~vqG~tVd  204 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQS----------LDSVSSVNTKYVQGITVD  204 (783)
T ss_pred             cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhh----------hhhhhhhhhhhcccceec
Confidence            986521    11111 23445678999865 448899999999999999954          222222334567778888


Q ss_pred             CCCCCEEEEEeCCCcEEEEE-CCCCCeeEEEEe----cCCCCCEEEEEEcCCCCcEEEEEeCC-CcEEEEECCC
Q 010769          414 PLVPNLLATGSTDKMVKLWD-LSNNQPSCIASR----NPKAGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDTLS  481 (502)
Q Consensus       414 p~~~~~l~t~s~dg~i~vwd-~~~~~~~~~~~~----~~~~~~v~~~~~spd~~~llasg~~d-g~i~vwd~~~  481 (502)
                      |..++++++-. ||.|-+|| .++-+. .+...    ......+..++|+|..+.++++...| ++|+++++..
T Consensus       205 p~~~nY~cs~~-dg~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  205 PFSPNYFCSNS-DGDIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCCCCceeccc-cCceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            86668887766 99999999 333221 11111    11223599999999877778777765 6899999853

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.59  E-value=2.7e-08  Score=100.33  Aligned_cols=203  Identities=18%  Similarity=0.180  Sum_probs=141.9

Q ss_pred             ccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC-cEE
Q 010769          257 SIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-SVV  335 (502)
Q Consensus       257 ~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~  335 (502)
                      +....+..|+...+|++|+-. .+.|+.|+..|.|+++++.+|........|.++|+.+.-+.+|...|.+++... -..
T Consensus      1092 r~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            334456678899999999988 679999999999999999999999999999999999999999955555555555 567


Q ss_pred             EEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE-Ee---cCCCCeeEEE
Q 010769          336 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LH---AHDKAVCTIS  411 (502)
Q Consensus       336 vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~---~h~~~v~~l~  411 (502)
                      +|++...-.....   -..-.++.|+.... .-+.|+......+||+.+..         ++.+ +.   +....-++..
T Consensus      1171 LW~~~s~~~~~Hs---f~ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~---------~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHS---FDEDKAVKFSNSLQ-FRALGTEADDALLYDVQTCS---------PLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred             HhccccccCcccc---ccccceeehhhhHH-HHHhcccccceEEEecccCc---------HHHHhcCcchhhhhhccccc
Confidence            8998753222211   23356788887533 45667767789999999972         3322 21   2223347788


Q ss_pred             EcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       412 ~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      |+|.. .+++   .||.  +||++..+  .+..+..... -..-.|+|.|..+++      +-.|||+++-+.++..
T Consensus      1238 FsP~D-~LIl---ndGv--LWDvR~~~--aIh~FD~ft~-~~~G~FHP~g~eVII------NSEIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1238 FSPCD-TLIL---NDGV--LWDVRIPE--AIHRFDQFTD-YGGGGFHPSGNEVII------NSEIWDMRTFKLLHSV 1299 (1516)
T ss_pred             cCCCc-ceEe---eCce--eeeeccHH--HHhhhhhhee-cccccccCCCceEEe------echhhhhHHHHHHhcC
Confidence            99987 6665   3553  89998875  3433332221 123359999986444      2358999998876543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.54  E-value=2.7e-07  Score=58.08  Aligned_cols=39  Identities=33%  Similarity=0.646  Sum_probs=36.7

Q ss_pred             CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769          299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  338 (502)
                      ++++.++.+|...|++|+|+|++ .+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            46789999999999999999998 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.53  E-value=2.5e-05  Score=82.50  Aligned_cols=286  Identities=12%  Similarity=0.204  Sum_probs=156.8

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      .++.|.++.|.-+.+-|+.+...|+     |...+.... ...+.+.    +..-..|++|       ||++..++..+.
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~-----iilvd~et~-~~eivg~----vd~GI~aasw-------S~Dee~l~liT~  129 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGD-----IILVDPETL-ELEIVGN----VDNGISAASW-------SPDEELLALITG  129 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCc-----EEEEccccc-ceeeeee----ccCceEEEee-------cCCCcEEEEEeC
Confidence            4578999999999999999998883     333333322 0011111    2233367788       899999999998


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      .+++.+-.-+ .+.....                     .. ..-....+....+-|-.. .+.+ .|+. |.....+..
T Consensus       130 ~~tll~mT~~-f~~i~E~---------------------~L-~~d~~~~sk~v~VGwGrk-eTqf-rgs~-gr~~~~~~~  183 (1265)
T KOG1920|consen  130 RQTLLFMTKD-FEPIAEK---------------------PL-DADDERKSKFVNVGWGRK-ETQF-RGSE-GRQAARQKI  183 (1265)
T ss_pred             CcEEEEEecc-ccchhcc---------------------cc-ccccccccccceeccccc-ceee-ecch-hhhcccccc
Confidence            8888665432 1111100                     00 000001122233344332 1111 1211 111111111


Q ss_pred             CC-eeeEEeccCCCCeEEEEEcCCCCcEEEEEE----CC-CcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEE
Q 010769          298 AG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGS----FD-RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       298 ~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----~d-g~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  371 (502)
                      .. +......-+ +.=++|.|.-+| .++++..    .+ +.|++||.. +..........+--.+++|-|.|. .+++-
T Consensus       184 ~~ek~~~~~~~~-~~~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs-~iA~i  259 (1265)
T KOG1920|consen  184 EKEKALEQIEQD-DHKTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS-LIAAI  259 (1265)
T ss_pred             cccccccchhhc-cCCceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC-eEeee
Confidence            10 001111112 233468999998 7777632    23 799999987 333332333444557899999766 44443


Q ss_pred             ---eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE---EeCCCcEEEEECCCCCeeEEEEe
Q 010769          372 ---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT---GSTDKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       372 ---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t---~s~dg~i~vwd~~~~~~~~~~~~  445 (502)
                         +.++.|.+|.-.....      ......+......|..++|+.++ .+|++   ......|++|-+.+....+...+
T Consensus       260 q~~~sd~~IvffErNGL~h------g~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l  332 (1265)
T KOG1920|consen  260 QCKTSDSDIVFFERNGLRH------GEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHWYLKQEL  332 (1265)
T ss_pred             eecCCCCcEEEEecCCccc------cccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEEEEEEEE
Confidence               4566788887654321      12222333344559999999987 77777   44455599999988765444444


Q ss_pred             cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      .......  +.|+|-..+.|.+-...|...++++
T Consensus       333 ~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  333 QFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             ecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence            3322222  7788876655665556666655554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.52  E-value=6.2e-08  Score=97.82  Aligned_cols=199  Identities=17%  Similarity=0.229  Sum_probs=133.5

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +-+.++|++|+..|.|++|++.++....                           ....|..+|+-+.-+.+|..+|.++
T Consensus      1110 s~~~~hL~vG~~~Geik~~nv~sG~~e~---------------------------s~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1110 SGGTNHLAVGSHAGEIKIFNVSSGSMEE---------------------------SVNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred             ecCCceEEeeeccceEEEEEccCccccc---------------------------cccccccccccccccCCcceeeeec
Confidence            6789999999999999999998755433                           3457999999999999977666666


Q ss_pred             ecCC-cEEEEECCC-CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE----eecCCeEEEE
Q 010769          286 SADK-QVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAADVESLA  359 (502)
Q Consensus       286 s~Dg-~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~v~  359 (502)
                      +... -..+|++.. +...++|.    .-.++.|+... ..-+.|+.-..+.+||+.+........    .....-+++.
T Consensus      1163 s~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred             cccCchHHHhccccccCcccccc----ccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence            6555 578999864 45555554    34577887764 455566666789999999887654322    2233347889


Q ss_pred             eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      |+|... +++   .||  .+||+|..         ..+..+...+..+. -.|+|+| .-++.-+     -|||+++.+ 
T Consensus      1238 FsP~D~-LIl---ndG--vLWDvR~~---------~aIh~FD~ft~~~~-G~FHP~g-~eVIINS-----EIwD~RTF~- 1294 (1516)
T KOG1832|consen 1238 FSPCDT-LIL---NDG--VLWDVRIP---------EAIHRFDQFTDYGG-GGFHPSG-NEVIINS-----EIWDMRTFK- 1294 (1516)
T ss_pred             cCCCcc-eEe---eCc--eeeeeccH---------HHHhhhhhheeccc-ccccCCC-ceEEeec-----hhhhhHHHH-
Confidence            999765 443   355  47999976         44444443332222 3489998 5566544     389999876 


Q ss_pred             eEEEEecCCCCCEEEEEEcCCCC
Q 010769          440 SCIASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~  462 (502)
                       ++.....-  .-..+.|+..|.
T Consensus      1295 -lLh~VP~L--dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1295 -LLHSVPSL--DQCAVTFNSTGD 1314 (1516)
T ss_pred             -HHhcCccc--cceEEEeccCcc
Confidence             23322211  124566777766

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=7.5e-07  Score=82.67  Aligned_cols=167  Identities=17%  Similarity=0.209  Sum_probs=115.2

Q ss_pred             EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEE
Q 010769          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  370 (502)
                      |++.+..+-+...-+.+|...|..++|+|...-++..++.+..|+|.|+++....... .....+++++|.-+..+++++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAYNQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-eccCCceeeeeccCCcceeEE
Confidence            5666555555555667788999999999998558999999999999999987766533 344889999999999999999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCCCCCccEEEec--CCCCeeEEE------EcCCCCCEEEEEeCCCcEEEEECCCCC--ee
Q 010769          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTIS------YNPLVPNLLATGSTDKMVKLWDLSNNQ--PS  440 (502)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~------~sp~~~~~l~t~s~dg~i~vwd~~~~~--~~  440 (502)
                      |..+|.|.+||+|...        .++..+.+  ...+|..++      ..+.+ .+|+..+.+  +..|.+....  +.
T Consensus       254 Gl~nG~VlvyD~R~~~--------~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~~~p  322 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPE--------GPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAECLP  322 (463)
T ss_pred             eccCceEEEEEccCCC--------chHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhccccCCC
Confidence            9999999999999873        23332222  122333332      33334 566655554  5677665432  22


Q ss_pred             EEEEecCCCCCEEEEEEcCCCCcEEEEEeC
Q 010769          441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       441 ~~~~~~~~~~~v~~~~~spd~~~llasg~~  470 (502)
                      ++.... ..+.+.+++.++-.+.+|++.-.
T Consensus       323 ~vlele-~pG~cismqy~~~snh~l~tyRs  351 (463)
T KOG1645|consen  323 CVLELE-PPGICISMQYHGVSNHLLLTYRS  351 (463)
T ss_pred             cccccC-CCcceeeeeecCccceEEEEecC
Confidence            333333 34667788888866667776544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=1.3e-05  Score=81.61  Aligned_cols=199  Identities=14%  Similarity=0.143  Sum_probs=130.9

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCC-eEEEEEcCCCCcEEEEEECCCc-----EEEEeCCC
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHHSPQILLSGSFDRS-----VVMKDARI  341 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~dg~-----i~vwd~~~  341 (502)
                      .|.|  |++. +..++.|+.+|.|.+.+ +.-+.++.|+.+... |+.+ |.-++.++|++.+.|+.     |++|++..
T Consensus        27 ~isc--~~s~-~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   27 AISC--CSSS-TGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             ceeE--EcCC-CceEEEeeccccEEEec-ccceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccc
Confidence            5555  4555 45899999999988877 334555778877777 4444 44444478888877654     89999875


Q ss_pred             CCC---ccc-----eEe-----ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCee
Q 010769          342 STH---SGF-----KWA-----VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  408 (502)
Q Consensus       342 ~~~---~~~-----~~~-----~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~  408 (502)
                      .+.   +..     ...     ...++.+++.+.+ -..+++|-.+|.|.++.-.-...   .  .....-......+|+
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RD---r--gsr~~~~~~~~~pIT  175 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRD---R--GSRQDYSHRGKEPIT  175 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhc---c--ccceeeeccCCCCce
Confidence            321   111     111     2456788888876 45899999999999885322110   0  122222334467999


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ++++..++...+.+++ -..|.+|.+.... ........|..+++|.+|++.... +++++.. .|.+|+...
T Consensus       176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~q-fIca~~e-~l~fY~sd~  244 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQ-FICAGSE-FLYFYDSDG  244 (933)
T ss_pred             eeEEecCCceeEEEEe-cceeEEEEecCCC-cceeeeccCCccceeeecCCCCcc-EEEecCc-eEEEEcCCC
Confidence            9999988744333333 3469999998554 345567788889999999987764 4444433 699999863

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.49  E-value=5.3e-05  Score=69.63  Aligned_cols=182  Identities=18%  Similarity=0.164  Sum_probs=114.1

Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec----C--
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA----A--  353 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~--  353 (502)
                      ..+++++.++.|..||..+|+.+.++.. ...+....... + ..+++++.++.|+.+|..+++..-......    .  
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~  113 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD-G-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR  113 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE-T-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec-c-cccccccceeeeEecccCCcceeeeeccccccccccc
Confidence            4677778999999999999999887764 22221111222 2 456777788899999988887644311111    0  


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe-----------eEEEEcCCCCCEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV-----------CTISYNPLVPNLLAT  422 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v-----------~~l~~sp~~~~~l~t  422 (502)
                      ......+.  + ..++++..++.|..+|++++         +.++.........           ..+.+.  + ..++.
T Consensus       114 ~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~v~~  178 (238)
T PF13360_consen  114 SSSSPAVD--G-DRLYVGTSSGKLVALDPKTG---------KLLWKYPVGEPRGSSPISSFSDINGSPVIS--D-GRVYV  178 (238)
T ss_dssp             --SEEEEE--T-TEEEEEETCSEEEEEETTTT---------EEEEEEESSTT-SS--EEEETTEEEEEECC--T-TEEEE
T ss_pred             cccCceEe--c-CEEEEEeccCcEEEEecCCC---------cEEEEeecCCCCCCcceeeecccccceEEE--C-CEEEE
Confidence            11122222  3 36888888999999999998         6677666544221           222222  2 36666


Q ss_pred             EeCCCc-EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          423 GSTDKM-VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       423 ~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      ++.++. +.+ |+.+++.  +....  ...+..+ ....+.. |++++.++.|..||+++++.+-
T Consensus       179 ~~~~g~~~~~-d~~tg~~--~w~~~--~~~~~~~-~~~~~~~-l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  179 SSGDGRVVAV-DLATGEK--LWSKP--ISGIYSL-PSVDGGT-LYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             ECCTSSEEEE-ETTTTEE--EEEEC--SS-ECEC-EECCCTE-EEEEETTTEEEEEETTTTEEEE
T ss_pred             EcCCCeEEEE-ECCCCCE--EEEec--CCCccCC-ceeeCCE-EEEEeCCCEEEEEECCCCCEEe
Confidence            777775 555 9999983  33333  2223332 3455553 5556689999999999998753

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=1.5e-05  Score=81.14  Aligned_cols=193  Identities=15%  Similarity=0.184  Sum_probs=128.2

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccc-eeeEEecCCCCcEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS-VLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~l~s  284 (502)
                      ++++..+|.|+.+|.|.+.+-.                            ......++.+... |..|. .-++.++|++
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------~~~~~~fqa~~~siv~~L~-~~~~~~~L~s   82 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNSS----------------------------FQLIRGFQAYEQSIVQFLY-ILNKQNFLFS   82 (933)
T ss_pred             cCCCceEEEeeccccEEEeccc----------------------------ceeeehheecchhhhhHhh-cccCceEEEE
Confidence            6789999999999999887643                            1222234455555 44444 4443678888


Q ss_pred             EecCCc-----EEEEECCCC------eee--EEecc-----CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC--CCCC
Q 010769          285 ASADKQ-----VKIWDVAAG------KCN--LTLEH-----HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--ISTH  344 (502)
Q Consensus       285 gs~Dg~-----v~vwd~~~~------~~~--~~~~~-----h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~  344 (502)
                      .+.|+.     |+||+++.-      +++  +.+..     ...++.+++.+.+- ..+++|-.+|.|..+.-.  ..+.
T Consensus        83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrg  161 (933)
T KOG2114|consen   83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRG  161 (933)
T ss_pred             EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccc
Confidence            877654     999998632      344  12222     34678899999886 889999999999988532  1222


Q ss_pred             ccce--EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE
Q 010769          345 SGFK--WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       345 ~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      ....  .....+|+.+.+..++...+++++ ...|.+|.+...        ......+..|..++.|.++++..+.++++
T Consensus       162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr--------~p~~~~ld~~G~~lnCss~~~~t~qfIca  232 (933)
T KOG2114|consen  162 SRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGR--------TPSLKVLDNNGISLNCSSFSDGTYQFICA  232 (933)
T ss_pred             cceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCC--------CcceeeeccCCccceeeecCCCCccEEEe
Confidence            2222  234678999999887765334433 456889998844        22345577888899999999865334444


Q ss_pred             EeCCCcEEEEECCCCCe
Q 010769          423 GSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~  439 (502)
                      ++  ..+.+|+.....+
T Consensus       233 ~~--e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  233 GS--EFLYFYDSDGRGP  247 (933)
T ss_pred             cC--ceEEEEcCCCcce
Confidence            33  4599999886653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=2.2e-05  Score=79.33  Aligned_cols=181  Identities=17%  Similarity=0.180  Sum_probs=119.4

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+++|+-|+-.|.|++++.+..-                             .....|+..      .-. +.+++|||.
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s~~------~~~-Gey~asCS~   91 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHSSS------ILE-GEYVASCSD   91 (846)
T ss_pred             hcceeeeccccceEEEEecCCcc-----------------------------ccccccccc------ccC-CceEEEecC
Confidence            48899999999999999876310                             011123332      334 569999999


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCC----CCcEEEEEECCCcEEEEeCCCCC--CccceEeecCCeEEEEeC
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH----SPQILLSGSFDRSVVMKDARIST--HSGFKWAVAADVESLAWD  361 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~v~~~  361 (502)
                      ||+|.|-.+-+.+...++. ...++.+++++|+    ....+++|+.-| +.++.-+-..  .........+.|.++.|.
T Consensus        92 DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~  169 (846)
T KOG2066|consen   92 DGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR  169 (846)
T ss_pred             CCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence            9999999999888777776 4578999999998    236799999988 7776544221  122244567889999998


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      .   ++++-+...| |++||+.+.+......  .+. ........-..+.|.+..  .|+.| ...+|+|..++.
T Consensus       170 g---~lIAWand~G-v~vyd~~~~~~l~~i~--~p~-~~~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  170 G---NLIAWANDDG-VKVYDTPTRQRLTNIP--PPS-QSVRPELFPPHLHWQDED--RLVIG-WGDSVKICSIKK  234 (846)
T ss_pred             C---cEEEEecCCC-cEEEeccccceeeccC--CCC-CCCCcccCCCceEecCCC--eEEEe-cCCeEEEEEEec
Confidence            4   3666666555 8999998763221110  011 011112234567788743  45544 445699988873

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.45  E-value=5.8e-06  Score=83.63  Aligned_cols=104  Identities=17%  Similarity=0.267  Sum_probs=81.4

Q ss_pred             CCCCCEEEEecCC----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcE
Q 010769          206 REKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       206 s~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      +|...++|+++..    |+|.||- ++++....                         .   ...-.+++|+|+|. ..+
T Consensus        24 HPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-------------------------V---t~P~hatSLCWHpe-~~v   73 (1416)
T KOG3617|consen   24 HPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-------------------------V---TYPVHATSLCWHPE-EFV   73 (1416)
T ss_pred             CCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-------------------------c---ccceehhhhccChH-HHH
Confidence            7888899998764    7888873 33331110                         0   11223667999999 778


Q ss_pred             EEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769          282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       282 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  340 (502)
                      |++|-.-|.+.+|...+.+.......|..+|+.+.|+++| ..|+++..-|.|.+|...
T Consensus        74 La~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   74 LAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             HhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence            9999999999999988776666667799999999999999 899999999999999765

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.42  E-value=7.3e-07  Score=56.04  Aligned_cols=38  Identities=32%  Similarity=0.679  Sum_probs=35.5

Q ss_pred             CccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       395 ~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      +++..+.+|...|++++|+|++ .+|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            4678899999999999999997 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.42  E-value=7.9e-05  Score=68.82  Aligned_cols=206  Identities=14%  Similarity=0.083  Sum_probs=126.8

Q ss_pred             eeeEEecCCCCcEEEEEecCCc-EEEEECCCCeeeEEeccCCCCeE--EEEEcCCCCcEEEEEE-----CCCcEEEEeCC
Q 010769          269 VLGLAWNKEFRNILASASADKQ-VKIWDVAAGKCNLTLEHHTDKVQ--AVAWNHHSPQILLSGS-----FDRSVVMKDAR  340 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~Dg~-v~vwd~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~l~s~~-----~dg~i~vwd~~  340 (502)
                      ...++.+|..+..++.+-.-|+ ..+||..+++....+....+.-.  .-.|+++| ++|++.-     ..|.|-|||..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEECc
Confidence            4467888865777888877765 77899999988877754332221  35799999 6777653     35899999998


Q ss_pred             -CCCCccceEeecCCeEEEEeCCCCCCEEEEEe-----------------CCCeEEEEECCCCCCCCCCCCCCccEE--E
Q 010769          341 -ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-----------------EDGTIKGFDIRTAKSDPDSTSQQSSFT--L  400 (502)
Q Consensus       341 -~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~--~  400 (502)
                       +-..+.....+.-....+.+.|+++.+++.-+                 .+.++.+.|.+++         ..+..  +
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---------~ll~q~~L  156 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---------ALLEQVEL  156 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---------ceeeeeec
Confidence             33333323334445667788998864333321                 1223344444444         22322  3


Q ss_pred             --ecCCCCeeEEEEcCCCCCEEEEEeCCCc-------EEEEECCCCCeeEEEEe-----cCCCCCEEEEEEcCCCCcEEE
Q 010769          401 --HAHDKAVCTISYNPLVPNLLATGSTDKM-------VKLWDLSNNQPSCIASR-----NPKAGAVFSVAFSEDSPFVLA  466 (502)
Q Consensus       401 --~~h~~~v~~l~~sp~~~~~l~t~s~dg~-------i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~spd~~~lla  466 (502)
                        ..|.-.|..+++.++| ..++..-..|-       |-++.....  ......     ..-.+.+-+|++++++.++.+
T Consensus       157 p~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~  233 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV  233 (305)
T ss_pred             CccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence              3367789999999886 44443333221       333332221  111111     122466899999999997667


Q ss_pred             EEeCCCcEEEEECCCCccccc
Q 010769          467 IGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       467 sg~~dg~i~vwd~~~~~~~~~  487 (502)
                      |+=..+.+.+||..++..+..
T Consensus       234 tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  234 TSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             ECCCCCEEEEEECCCCCEeec
Confidence            766778999999999987654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.35  E-value=2.9e-05  Score=76.37  Aligned_cols=132  Identities=15%  Similarity=0.147  Sum_probs=89.3

Q ss_pred             ecCCeEEEEeCCCCCCEEEEE----eCCCe----EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE
Q 010769          351 VAADVESLAWDPHAEHSFVVS----LEDGT----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~----~~dg~----i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      ......++.|+...++.+.+.    +.+|.    -.+|++...+.      .....+.....+.|.+++++|+. ..|+.
T Consensus       204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl------qrvsvtsipL~s~v~~ca~sp~E-~kLvl  276 (545)
T PF11768_consen  204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL------QRVSVTSIPLPSQVICCARSPSE-DKLVL  276 (545)
T ss_pred             ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce------eEEEEEEEecCCcceEEecCccc-ceEEE
Confidence            344556677776555555543    22333    34566543321      11122223567889999999987 89999


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010769          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      |+.||+|.+||...+.....    ...-..+.++|+|+|. ++++|+..|.+.+||+.-+..-.+.++....
T Consensus       277 GC~DgSiiLyD~~~~~t~~~----ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~  343 (545)
T PF11768_consen  277 GCEDGSIILYDTTRGVTLLA----KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSEDAT  343 (545)
T ss_pred             EecCCeEEEEEcCCCeeeee----eecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeeccccCC
Confidence            99999999999987642211    2234478899999999 6899999999999999877766666555433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.33  E-value=0.00021  Score=65.10  Aligned_cols=202  Identities=15%  Similarity=0.189  Sum_probs=117.6

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccC-CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  342 (502)
                      +-...+.+|+|+|+.+.++++....+.|..+++ +|+.++++... .+-.-.|++..++ .++++.-.++.+.++++...
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE---
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEecc
Confidence            445569999999986778888888889988886 47888777433 3567888998776 66666656899999988443


Q ss_pred             CCc--c---ceE------eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE--E------EecC
Q 010769          343 THS--G---FKW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF--T------LHAH  403 (502)
Q Consensus       343 ~~~--~---~~~------~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~------~~~h  403 (502)
                      ...  .   ...      .....+..++|+|.+.. |+++-...-..+|.++....      ...+.  .      ....
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPG------GFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-------SS--EEEE-HHHH-HT--
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccC------ccceeeccccccccccce
Confidence            211  1   011      13356899999998764 55556666666777664210      01111  1      1123


Q ss_pred             CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-------CCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010769          404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       404 ~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~v~~~~~spd~~~llasg~~dg~i~v  476 (502)
                      ...+++++++|..+.+++.......|..+| ..+++.....+...       ....-.|+|.++|. |++ .+.-+.+++
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYI-vsEpNlfy~  246 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYI-VSEPNLFYR  246 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEE-EETTTEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEE-EcCCceEEE
Confidence            456899999998767888888889999999 55665555555431       12467899999997 444 456666655


Q ss_pred             E
Q 010769          477 W  477 (502)
Q Consensus       477 w  477 (502)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            4

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.32  E-value=0.00067  Score=67.50  Aligned_cols=223  Identities=9%  Similarity=0.060  Sum_probs=125.0

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      +..+++++.+|.|.-+|..+++.+.....                  ........+...++.    . . + .++.++.+
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~------------------~~~~~~~~~~~sP~v----~-~-~-~v~~~~~~  214 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNL------------------DVPSLTLRGESAPAT----A-F-G-GAIVGGDN  214 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecC------------------CCCcccccCCCCCEE----E-C-C-EEEEEcCC
Confidence            45677788889999999887655432211                  000000011112221    1 1 2 46667788


Q ss_pred             CcEEEEECCCCeeeEEeccCCC-------CeEEEEEcC--CCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEE
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTD-------KVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA  359 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~-------~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~  359 (502)
                      |.+..+|..+|+.+........       ....+..+|  .+ ..++.++.+|.+..+|..+++..- ...... ...+.
T Consensus       215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~W-~~~~~~-~~~~~  291 (394)
T PRK11138        215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIVW-KREYGS-VNDFA  291 (394)
T ss_pred             CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEEE-eecCCC-ccCcE
Confidence            9999999999887665431110       001111112  13 456777789999999998876432 111111 11122


Q ss_pred             eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ..  +. .+++++.+|.|..+|..++         ..++...... ....+..+.  + ..|+.++.+|.|.++|..+++
T Consensus       292 ~~--~~-~vy~~~~~g~l~ald~~tG---------~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        292 VD--GG-RIYLVDQNDRVYALDTRGG---------VELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             EE--CC-EEEEEcCCCeEEEEECCCC---------cEEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCCC
Confidence            21  23 6778888999999999887         3344332111 112222222  2 678889999999999999998


Q ss_pred             eeEEEEecCCCCCEEE-EEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          439 PSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       439 ~~~~~~~~~~~~~v~~-~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      .  +.........+.+ ..+ .++  .|..++.+|.|+.++.
T Consensus       357 ~--~~~~~~~~~~~~s~P~~-~~~--~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        357 F--VAQQKVDSSGFLSEPVV-ADD--KLLIQARDGTVYAITR  393 (394)
T ss_pred             E--EEEEEcCCCcceeCCEE-ECC--EEEEEeCCceEEEEeC
Confidence            4  3333222222322 222 234  3667889999888764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.31  E-value=0.00067  Score=62.82  Aligned_cols=226  Identities=14%  Similarity=0.072  Sum_probs=135.4

Q ss_pred             CC-CCCEEEEecCCC-cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769          206 RE-KGNFMAVGSMEP-AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       206 s~-~~~~la~g~~dg-~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      +| .+..+|.+-.-| ...+||..++.......                   ...-..+.+|      -.|+++|+ +|+
T Consensus        13 ~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-------------------a~~gRHFyGH------g~fs~dG~-~Ly   66 (305)
T PF07433_consen   13 HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-------------------APPGRHFYGH------GVFSPDGR-LLY   66 (305)
T ss_pred             CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-------------------CCCCCEEecC------EEEcCCCC-EEE
Confidence            55 566777777665 46788887655433211                   1222345566      46999955 666


Q ss_pred             EE-----ecCCcEEEEECC-CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC------------------CCcEEEEeC
Q 010769          284 SA-----SADKQVKIWDVA-AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF------------------DRSVVMKDA  339 (502)
Q Consensus       284 sg-----s~Dg~v~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~------------------dg~i~vwd~  339 (502)
                      +.     +..|.|-|||.. +-+.+..+..|.-....+.+.|++ ..|+++..                  +.++.+.|.
T Consensus        67 tTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~  145 (305)
T PF07433_consen   67 TTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA  145 (305)
T ss_pred             EeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence            65     335889999998 567788888888778889999999 55555521                  234555566


Q ss_pred             CCCCCccce----EeecCCeEEEEeCCCCCCEEEEEeC-CC-------eEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769          340 RISTHSGFK----WAVAADVESLAWDPHAEHSFVVSLE-DG-------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       340 ~~~~~~~~~----~~~~~~v~~v~~~p~~~~~l~~~~~-dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      +++......    ..+...+..+++.+++.  ++.+.. .|       .|.++.........    ..+......-.+.+
T Consensus       146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~--V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~----~~p~~~~~~l~~Y~  219 (305)
T PF07433_consen  146 RSGALLEQVELPPDLHQLSIRHLAVDGDGT--VAFAMQYQGDPGDAPPLVALHRRGGALRLL----PAPEEQWRRLNGYI  219 (305)
T ss_pred             CCCceeeeeecCccccccceeeEEecCCCc--EEEEEecCCCCCccCCeEEEEcCCCcceec----cCChHHHHhhCCce
Confidence            666544321    12455788889988764  444321 11       23333332210000    00001112345789


Q ss_pred             eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC
Q 010769          408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~  470 (502)
                      -+|++++++..+.+|+=.-+.+.+||..+++......    ...+..++..+++ | +++++.
T Consensus       220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f-~~ssG~  276 (305)
T PF07433_consen  220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-F-LVSSGQ  276 (305)
T ss_pred             EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-e-EEeCCC
Confidence            9999999884455666678889999999998432222    2346677777776 3 555443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.30  E-value=0.00061  Score=60.27  Aligned_cols=102  Identities=13%  Similarity=0.103  Sum_probs=68.2

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE-EecCCCCcEEEEEec
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL-AWNKEFRNILASASA  287 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~~l~sgs~  287 (502)
                      |++++.|+..|.+++.++.++.....+.+++.                            |.+- ...++ +.++..|+.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~----------------------------vk~~a~~d~~-~glIycgsh  113 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET----------------------------VKVRAQCDFD-GGLIYCGSH  113 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhh----------------------------hccceEEcCC-CceEEEecC
Confidence            88999999999999999988766555444331                            1111 22344 459999999


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  340 (502)
                      |++....|..+..++...+-..+...+-+..|-. ..|..+...|.+.--...
T Consensus       114 d~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  114 DGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             CCcEEEecccccceEEecccCCceeccceecCCC-ceEEEEeccceEEEEccC
Confidence            9999999999999988876443333344455533 345555556665554443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.27  E-value=0.001  Score=66.11  Aligned_cols=229  Identities=10%  Similarity=0.070  Sum_probs=132.6

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+..+++++.+|.+..+|..+++.+.....-+                       .....++    .. +  ..++.++.
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-----------------------~~~ssP~----v~-~--~~v~v~~~  168 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-----------------------EALSRPV----VS-D--GLVLVHTS  168 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-----------------------ceecCCE----EE-C--CEEEEECC
Confidence            35677788889999999988766544211100                       0011111    11 2  35677888


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEE-EEEcC--CCCcEEEEEECCCcEEEEeCCCCCCccceEeecCC--------eE
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQA-VAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD--------VE  356 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~-l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~  356 (502)
                      ++.|..+|..+|+.+..+......+.. ..-+|  .+ ..++.++.+|.+..+|..+++..-. .....+        ..
T Consensus       169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~-~~~~~~~~~~~~~~~~  246 (394)
T PRK11138        169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQ-QRISQPTGATEIDRLV  246 (394)
T ss_pred             CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhhe-eccccCCCccchhccc
Confidence            899999999999988777532111000 00011  12 3466777889999999887764321 111000        00


Q ss_pred             EEEeCC--CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769          357 SLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       357 ~v~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      .+.-+|  .+. .+++++.+|.+..+|..++         +.++.....  ....+...  + ..|+.++.+|.+..+|.
T Consensus       247 ~~~~sP~v~~~-~vy~~~~~g~l~ald~~tG---------~~~W~~~~~--~~~~~~~~--~-~~vy~~~~~g~l~ald~  311 (394)
T PRK11138        247 DVDTTPVVVGG-VVYALAYNGNLVALDLRSG---------QIVWKREYG--SVNDFAVD--G-GRIYLVDQNDRVYALDT  311 (394)
T ss_pred             ccCCCcEEECC-EEEEEEcCCeEEEEECCCC---------CEEEeecCC--CccCcEEE--C-CEEEEEcCCCeEEEEEC
Confidence            111122  123 5777778999999999987         444443321  11122222  3 57777888999999999


Q ss_pred             CCCCeeEEEEecCCC-CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          435 SNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       435 ~~~~~~~~~~~~~~~-~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .+++.  +....... ....+.... ++  .|..++.+|.|.+.|..+++.+.+.
T Consensus       312 ~tG~~--~W~~~~~~~~~~~sp~v~-~g--~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        312 RGGVE--LWSQSDLLHRLLTAPVLY-NG--YLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             CCCcE--EEcccccCCCcccCCEEE-CC--EEEEEeCCCEEEEEECCCCCEEEEE
Confidence            98873  33222111 112222222 33  3667889999999999999877554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.26  E-value=5.9e-05  Score=76.66  Aligned_cols=112  Identities=12%  Similarity=0.276  Sum_probs=76.3

Q ss_pred             ccccccCCCceEEEEEecCC-cceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010769          143 EDMTINPNDAVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~-~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      +-..|+|...++++++..-. .+++.||.-. ++.   .  .|-..  |.-..++.|       +|..-.||.|-.-|.+
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadt-GEP---q--r~Vt~--P~hatSLCW-------Hpe~~vLa~gwe~g~~   83 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADT-GEP---Q--RDVTY--PVHATSLCW-------HPEEFVLAQGWEMGVS   83 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecC-CCC---C--ccccc--ceehhhhcc-------ChHHHHHhhcccccee
Confidence            34579999999999976542 2344444322 221   1  11111  111244567       6778889999889999


Q ss_pred             EEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      .+|.....                           ........|+.+|..+.|+++ ++.|.++..=|.|.+|.+.
T Consensus        84 ~v~~~~~~---------------------------e~htv~~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   84 DVQKTNTT---------------------------ETHTVVETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EEEecCCc---------------------------eeeeeccCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence            99987642                           122233469999999999999 5699999999999999875

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.22  E-value=0.00023  Score=71.31  Aligned_cols=161  Identities=12%  Similarity=0.185  Sum_probs=100.2

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      .-|.=-++..++.+|+.|+..|     -||.|+...+....+...   . .....|+..+      |++..++|.|+..|
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G-----~lyl~~R~~~~~~~~~~~---~-~~~~~~~~~v------s~~e~lvAagt~~g   98 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAG-----SVYLYNRHTGEMRKLKNE---G-ATGITCVRSV------SSVEYLVAAGTASG   98 (726)
T ss_pred             ceEEEEEeecCCceEEEecccc-----eEEEEecCchhhhccccc---C-ccceEEEEEe------cchhHhhhhhcCCc
Confidence            3444456777899999999888     888888766522222110   0 1122333333      67889999999999


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .|.|+-++. ....+...+                    ...-..|...|+|++|+++ ...|++|...|+|.+-.+.+.
T Consensus        99 ~V~v~ql~~-~~p~~~~~~--------------------t~~d~~~~~rVTal~Ws~~-~~k~ysGD~~Gkv~~~~L~s~  156 (726)
T KOG3621|consen   99 RVSVFQLNK-ELPRDLDYV--------------------TPCDKSHKCRVTALEWSKN-GMKLYSGDSQGKVVLTELDSR  156 (726)
T ss_pred             eEEeehhhc-cCCCcceee--------------------ccccccCCceEEEEEeccc-ccEEeecCCCceEEEEEechh
Confidence            999998875 222221111                    1112248899999999999 669999999999999888772


Q ss_pred             ----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC
Q 010769          300 ----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       300 ----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  341 (502)
                          -..+.+-...+.|..+.+...  .+|++.. - ...++++..
T Consensus       157 ~~~~~~~q~il~~ds~IVQlD~~q~--~LLVStl-~-r~~Lc~tE~  198 (726)
T KOG3621|consen  157 QAFLSKSQEILSEDSEIVQLDYLQS--YLLVSTL-T-RCILCQTEA  198 (726)
T ss_pred             hhhccccceeeccCcceEEeecccc--eehHhhh-h-hhheeecch
Confidence                112223334567777776542  3444333 2 234455543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.17  E-value=0.00011  Score=72.79  Aligned_cols=204  Identities=14%  Similarity=0.090  Sum_probs=122.5

Q ss_pred             ccceeeEEecCCCCcEEEEEecC---CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcE--EEEeCC
Q 010769          266 TDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV--VMKDAR  340 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~D---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i--~vwd~~  340 (502)
                      ...+..-+|+|++..+.+..-..   ..+.++++.+++....+. ..+.-..-+|+|+|..++++...||..  .++|+.
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            35566778999865544443222   359999999886544443 233344567999998888888888865  555666


Q ss_pred             CCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769          341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       341 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ...... +....+.-..=.|+|+|..+++++...|.-.+|-....        ......+....+.-..-.|+|+| .+|
T Consensus       271 ~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~--------g~~~~riT~~~~~~~~p~~SpdG-~~i  340 (425)
T COG0823         271 GKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE--------GSQVTRLTFSGGGNSNPVWSPDG-DKI  340 (425)
T ss_pred             CCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC--------CCceeEeeccCCCCcCccCCCCC-CEE
Confidence            655333 22233333466799999988888888887555544433        12233444333333477899999 555


Q ss_pred             EEEeC-CCc--EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          421 ATGST-DKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       421 ~t~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +..+. .|.  |.+.++.++..   .....+......-.|.|++..++.+++.-+.=.++.+....
T Consensus       341 ~~~~~~~g~~~i~~~~~~~~~~---~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g  403 (425)
T COG0823         341 VFESSSGGQWDIDKNDLASGGK---IRILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDG  403 (425)
T ss_pred             EEEeccCCceeeEEeccCCCCc---EEEccccccCCCCCcCCCCceEEEeccCCCCceEEEeeccc
Confidence            54443 454  66667766552   11222223344567888888766655555444555554433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.17  E-value=0.00027  Score=74.95  Aligned_cols=202  Identities=15%  Similarity=0.251  Sum_probs=130.1

Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeC----CC
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA----RI  341 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~----~~  341 (502)
                      .+.|.++.|..+ .+-++.+...|.|.+-|..+..... ...-...|.+++|+|++ ..++..+..+++.+-.-    -.
T Consensus        68 d~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   68 DDEIVSVQFLAD-TNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             CcceEEEEEecc-cceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchh
Confidence            378999999988 6678888899999999887764322 22346789999999999 78888887777766332    10


Q ss_pred             -----------CCCccceEe-----------------------------ecCCeEEEEeCCCCCCEEEEE-----eCCCe
Q 010769          342 -----------STHSGFKWA-----------------------------VAADVESLAWDPHAEHSFVVS-----LEDGT  376 (502)
Q Consensus       342 -----------~~~~~~~~~-----------------------------~~~~v~~v~~~p~~~~~l~~~-----~~dg~  376 (502)
                                 .+.+..-|+                             ....-++++|.-+|. +|+++     .....
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEeccCCcee
Confidence                       010100010                             112234689998876 66663     22378


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe---CCCcEEEEECCCCCe-eEEEEecCCCCCE
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS---TDKMVKLWDLSNNQP-SCIASRNPKAGAV  452 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s---~dg~i~vwd~~~~~~-~~~~~~~~~~~~v  452 (502)
                      |++||.. +..         -..-....+.-.+++|-|.| .++++..   .|+.|.+|.-+.-+. ............|
T Consensus       224 irV~drE-g~L---------ns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v  292 (1265)
T KOG1920|consen  224 IRVYDRE-GAL---------NSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV  292 (1265)
T ss_pred             EEEeccc-chh---------hcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence            9999987 311         11111122334678999987 7777753   356799997654331 1222334444559


Q ss_pred             EEEEEcCCCCcEEEE---EeCCCcEEEEECCCCc
Q 010769          453 FSVAFSEDSPFVLAI---GGSKGKLEIWDTLSDA  483 (502)
Q Consensus       453 ~~~~~spd~~~llas---g~~dg~i~vwd~~~~~  483 (502)
                      ..++|+.++. +||+   ......|++|-+.+..
T Consensus       293 e~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  293 EELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             heeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence            9999999998 6777   4555569999887644

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.15  E-value=0.00061  Score=68.96  Aligned_cols=257  Identities=13%  Similarity=0.151  Sum_probs=136.7

Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchh------hhhhccccCCc-cccccccCCcccceeeEEec---CCCCcE
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKKKSKKGKK-SSIKYKKGSHTDSVLGLAWN---KEFRNI  281 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~~---~~~~~~  281 (502)
                      |.+|+..|.++|+-+.++..+..+.++...+..      ..++....... .....--..|.    .+++.   -+|+ +
T Consensus        69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp----~~s~t~g~ydGr-~  143 (635)
T PRK02888         69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHP----HMSFTDGTYDGR-Y  143 (635)
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCC----cccccCCcccee-E
Confidence            678899999999999998887776666543221      01100000000 00000000111    11121   1333 4


Q ss_pred             EEEEe-cCCcEEEEECCCCeeeEEecc-CCCCeEEEE-------------------EcCCCCcEEEEEECCCcEEEEeCC
Q 010769          282 LASAS-ADKQVKIWDVAAGKCNLTLEH-HTDKVQAVA-------------------WNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       282 l~sgs-~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~-------------------~~~~~~~~l~s~~~dg~i~vwd~~  340 (502)
                      |+.-. ....|-.-++...++-+.+.- ....+..++                   +.|+|..+..+.-..+.+.+.|..
T Consensus       144 ~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~e  223 (635)
T PRK02888        144 LFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAE  223 (635)
T ss_pred             EEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECc
Confidence            44433 355666666665544332210 111222222                   234442222233344566777776


Q ss_pred             CCCCccceEeecCCeEEEEeCCCCCCEEEEEe---------------------------------------CCCeEEEEE
Q 010769          341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL---------------------------------------EDGTIKGFD  381 (502)
Q Consensus       341 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---------------------------------------~dg~i~i~d  381 (502)
                      +.+.. ......+....+.++|++...++++.                                       .++.|.++|
T Consensus       224 tmeV~-~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID  302 (635)
T PRK02888        224 TMEVA-WQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVD  302 (635)
T ss_pred             cceEE-EEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEE
Confidence            54332 23344455566777777664444431                                       124466666


Q ss_pred             CCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----------eEEEEecCCCCC
Q 010769          382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------SCIASRNPKAGA  451 (502)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----------~~~~~~~~~~~~  451 (502)
                      .++.....    ...+..+. -......+.++|+|..+++++..+.+|.|+|+.+.+.          ..+.......+ 
T Consensus       303 ~~t~~~~~----~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-  376 (635)
T PRK02888        303 GRKAANAG----SALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-  376 (635)
T ss_pred             CCccccCC----cceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-
Confidence            66510000    12333333 4456788999999966666777799999999987542          12333333333 


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       452 v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      -...+|.++|. .+.+-.-|..|..|++.+
T Consensus       377 PLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        377 PLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEECCCCC-EEEeEeecceeEEEehHH
Confidence            34678999987 688888999999999976

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.14  E-value=0.00088  Score=65.50  Aligned_cols=272  Identities=15%  Similarity=0.195  Sum_probs=143.8

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeecc---cc------------CCCcceeeeecCCC
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI---II------------PAFPLCMAWLDCPL  203 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~---~~------------~~~~~~~~w~~~~~  203 (502)
                      ...+....|+|+|+.||.....      .||..+...+....|.  ++.   +.            -.....+-|     
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~------nly~~~~~~~~~~~lT--~dg~~~i~nG~~dwvyeEEv~~~~~~~~W-----  108 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDN------NLYLRDLATGQETQLT--TDGEPGIYNGVPDWVYEEEVFDRRSAVWW-----  108 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETT------EEEEESSTTSEEEESE--S--TTTEEESB--HHHHHHTSSSSBSEEE-----
T ss_pred             ccccccceeecCCCeeEEEecC------ceEEEECCCCCeEEec--cccceeEEcCccceeccccccccccceEE-----
Confidence            4578899999999999999854      7888865443111111  111   00            111234444     


Q ss_pred             CCCCCCCEEEEecCC-CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          204 KDREKGNFMAVGSME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       204 ~~s~~~~~la~g~~d-g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                        ||+|++||....| ..|+.+.+.......                              +.--.+..+.+-.-|... 
T Consensus       109 --Spd~~~la~~~~d~~~v~~~~~~~~~~~~------------------------------~~yp~~~~~~YPk~G~~n-  155 (353)
T PF00930_consen  109 --SPDSKYLAFLRFDEREVPEYPLPDYSPPD------------------------------SQYPEVESIRYPKAGDPN-  155 (353)
T ss_dssp             ---TTSSEEEEEEEE-TTS-EEEEEEESSST------------------------------ESS-EEEEEE--BTTS---
T ss_pred             --CCCCCEEEEEEECCcCCceEEeeccCCcc------------------------------ccCCcccccccCCCCCcC-
Confidence              8999999987655 455555542100000                              000123444442221111 


Q ss_pred             EEEecCCcEEEEECCCCeeeE-E-e---ccCCCCeEEEEEcCCCCcEEEE-EECCC---cEEEEeCCCCCCccceEe-ec
Q 010769          283 ASASADKQVKIWDVAAGKCNL-T-L---EHHTDKVQAVAWNHHSPQILLS-GSFDR---SVVMKDARISTHSGFKWA-VA  352 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~-~-~---~~h~~~v~~l~~~~~~~~~l~s-~~~dg---~i~vwd~~~~~~~~~~~~-~~  352 (502)
                      .    .-.+.|+++.+++... . .   ..-..-+..+.|.+++..+++. ...+.   .+.++|..++........ ..
T Consensus       156 p----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~  231 (353)
T PF00930_consen  156 P----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD  231 (353)
T ss_dssp             -----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred             C----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence            1    1246778888776532 1 1   2234578899999998313333 23332   466677776554332222 22


Q ss_pred             CCe---EEEEeC-CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeE-EEEcCCCCCEEEEEeCCC
Q 010769          353 ADV---ESLAWD-PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT-ISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       353 ~~v---~~v~~~-p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~sp~~~~~l~t~s~dg  427 (502)
                      +.|   ....|. +++..++.....+|.-++|-+...        ......+....-.|.. +.+++.+..+..++..++
T Consensus       232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--------~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~  303 (353)
T PF00930_consen  232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD--------GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDN  303 (353)
T ss_dssp             SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT--------SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred             cceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc--------ccceeccccCceeecccceEcCCCCEEEEEecCCC
Confidence            222   244554 777777777778887666555443        2334455555566744 677888756666776533


Q ss_pred             ----cEEEEECC-CCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC
Q 010769          428 ----MVKLWDLS-NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       428 ----~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d  471 (502)
                          .|+.-++. .+.+.   .+....+.-..+.|||+++|++.+++.-
T Consensus       304 p~~r~lY~v~~~~~~~~~---~LT~~~~~~~~~~~Spdg~y~v~~~s~~  349 (353)
T PF00930_consen  304 PGERHLYRVSLDSGGEPK---CLTCEDGDHYSASFSPDGKYYVDTYSGP  349 (353)
T ss_dssp             TTSBEEEEEETTETTEEE---ESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred             CCceEEEEEEeCCCCCeE---eccCCCCCceEEEECCCCCEEEEEEcCC
Confidence                56666777 55533   3333333337999999999877776643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.06  E-value=0.004  Score=58.46  Aligned_cols=247  Identities=15%  Similarity=0.131  Sum_probs=135.2

Q ss_pred             CCCCCEEEEec----------CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec
Q 010769          206 REKGNFMAVGS----------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN  275 (502)
Q Consensus       206 s~~~~~la~g~----------~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~  275 (502)
                      +|+++.+.+++          ..-.|.+||..+......+.+.++               ++..     .......++++
T Consensus        44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k---------------~R~~-----~~~~~~~~~ls  103 (342)
T PF06433_consen   44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK---------------PRAQ-----VVPYKNMFALS  103 (342)
T ss_dssp             -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS----------------B-------BS--GGGEEE-
T ss_pred             CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc---------------chhe-----ecccccceEEc
Confidence            78999888743          235799999987544433333221               0000     11123345777


Q ss_pred             CCCCcEEEEEe--cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-ee-
Q 010769          276 KEFRNILASAS--ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV-  351 (502)
Q Consensus       276 ~~~~~~l~sgs--~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~-  351 (502)
                      .+++ +++...  --.+|.|.|+..++.+..+.. .+ +..+  -|.++.-|.+-+.||.+.-..+.......... .. 
T Consensus       104 ~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F  178 (342)
T PF06433_consen  104 ADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF  178 (342)
T ss_dssp             TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred             cCCc-EEEEEccCCCCeEEEEECCCCceeeeecC-CC-EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence            7744 554443  345789999999998887752 22 2222  24444568899999999999888544332111 10 


Q ss_pred             ---cCC-eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec----------CCCCeeEEEEcCCCC
Q 010769          352 ---AAD-VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----------HDKAVCTISYNPLVP  417 (502)
Q Consensus       352 ---~~~-v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~sp~~~  417 (502)
                         ..+ +..-++...+. .++--+-.|.|+-.|+.....       .....+..          -.+.-.-+++++.. 
T Consensus       179 ~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~-------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-  249 (342)
T PF06433_consen  179 DPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSA-------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-  249 (342)
T ss_dssp             STTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSE-------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTT-
T ss_pred             CCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcc-------cccCcccccCccccccCcCCcceeeeeecccc-
Confidence               111 11222322223 455567789999888876521       12222211          11334456777655 


Q ss_pred             CEEEEEeC---CC-------cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEE-EEEeCCCcEEEEECCCCcccc
Q 010769          418 NLLATGST---DK-------MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL-AIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       418 ~~l~t~s~---dg-------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll-asg~~dg~i~vwd~~~~~~~~  486 (502)
                      +.|++--.   ++       .|-++|+.+.+......+.   .++.+|+.+.+..=+| +....++.|.+||..+++.++
T Consensus       250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            33333221   22       2777888888743333332   4577899988764345 445568999999999999887


Q ss_pred             ccc
Q 010769          487 NRF  489 (502)
Q Consensus       487 ~~~  489 (502)
                      +.-
T Consensus       327 ~~~  329 (342)
T PF06433_consen  327 SIE  329 (342)
T ss_dssp             EE-
T ss_pred             ehh
Confidence            653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.04  E-value=0.00041  Score=68.71  Aligned_cols=179  Identities=16%  Similarity=0.141  Sum_probs=111.5

Q ss_pred             EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC---CcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE
Q 010769          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  367 (502)
                      +.+-|.. +.....+......+..-+|+|++..+....-..   ..+.++++.++.... .....+.-..-+|+|+|..+
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~g~~~~P~fspDG~~l  252 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-eeccCCccCCccCCCCCCEE
Confidence            4444433 444445544556677788999985544443333   348899998877654 33345556667899999988


Q ss_pred             EEEEeCCCe--EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc--EEEEECCCCCeeEEE
Q 010769          368 FVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKLWDLSNNQPSCIA  443 (502)
Q Consensus       368 l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~--i~vwd~~~~~~~~~~  443 (502)
                      +++...+|.  |+++|+...          ....+....+.-+.-.|+|+|..++++.+..|.  |.++++...... ..
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~----------~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-ri  321 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGK----------NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RL  321 (425)
T ss_pred             EEEECCCCCccEEEEcCCCC----------cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Ee
Confidence            888888886  555566654          123343333334467899999666667666776  555566665532 22


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCcc
Q 010769          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAG  484 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~--i~vwd~~~~~~  484 (502)
                      +...  +.-..-.|+|+|.+++..+..+|.  |.+.++.++..
T Consensus       322 T~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         322 TFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             eccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            2222  222277899999976665544454  77777766653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.00  E-value=0.0006  Score=71.55  Aligned_cols=143  Identities=17%  Similarity=0.191  Sum_probs=98.2

Q ss_pred             CcEEEEE-ecCCcEEEEECCCCeeeEEeccCCCC-eEEEEEcCC----CCcEEEEEECCCcEEEEeCCCCCCcc-----c
Q 010769          279 RNILASA-SADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHH----SPQILLSGSFDRSVVMKDARISTHSG-----F  347 (502)
Q Consensus       279 ~~~l~sg-s~Dg~v~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~-----~  347 (502)
                      .++|+.- .....|.-.|++.|+.+.....|... |..++-...    .+...+.|-.+..+..||.|......     .
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            4454443 34578999999999999999877644 555543211    12345678888999999999754211     1


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      .........|++-+.+|  .+++|+.+|.||+||- .+        .+....+++-..+|.+|..+.+| ++|++.+ +.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g--------~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~t  639 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LG--------KRAKTALPGLGDPIIGIDVTADG-KWILATC-KT  639 (794)
T ss_pred             ccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cc--------hhhhhcCCCCCCCeeEEEecCCC-cEEEEee-cc
Confidence            12334567788777654  7999999999999994 33        24445566778999999999999 5554444 34


Q ss_pred             cEEEEEC
Q 010769          428 MVKLWDL  434 (502)
Q Consensus       428 ~i~vwd~  434 (502)
                      .+.|++.
T Consensus       640 yLlLi~t  646 (794)
T PF08553_consen  640 YLLLIDT  646 (794)
T ss_pred             eEEEEEE
Confidence            6777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.95  E-value=0.0017  Score=59.48  Aligned_cols=184  Identities=14%  Similarity=0.085  Sum_probs=110.0

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ++.++++++.++.|..||..++..+.....                            ...+...... . ...++.++.
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~----------------------------~~~~~~~~~~-~-~~~v~v~~~   84 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL----------------------------PGPISGAPVV-D-GGRVYVGTS   84 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC----------------------------SSCGGSGEEE-E-TTEEEEEET
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec----------------------------cccccceeee-c-ccccccccc
Confidence            577788888899999999976544332211                            0011010111 2 236777778


Q ss_pred             CCcEEEEECCCCeeeEEe-ccCC---CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC----------
Q 010769          288 DKQVKIWDVAAGKCNLTL-EHHT---DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA----------  353 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~-~~h~---~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------  353 (502)
                      ++.|..+|+.+|+.+..+ ....   .....+.....+ ..++++..++.|..+|+++++..-.......          
T Consensus        85 ~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~  163 (238)
T PF13360_consen   85 DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS  163 (238)
T ss_dssp             TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred             eeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence            889999999999998874 3221   111122222224 6788888899999999998876432222111          


Q ss_pred             Ce-EEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          354 DV-ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       354 ~v-~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      .+ ..+.+. . . .++++..+|.+..+|+.++         ..++...  ...+..+ ....+ ..|+.++.++.|..|
T Consensus       164 ~~~~~~~~~-~-~-~v~~~~~~g~~~~~d~~tg---------~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~  227 (238)
T PF13360_consen  164 DINGSPVIS-D-G-RVYVSSGDGRVVAVDLATG---------EKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYAL  227 (238)
T ss_dssp             TEEEEEECC-T-T-EEEEECCTSSEEEEETTTT---------EEEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEE
T ss_pred             ccccceEEE-C-C-EEEEEcCCCeEEEEECCCC---------CEEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEE
Confidence            11 223333 2 3 6777777776444499987         4445433  2223331 23445 677777799999999


Q ss_pred             ECCCCC
Q 010769          433 DLSNNQ  438 (502)
Q Consensus       433 d~~~~~  438 (502)
                      |+++++
T Consensus       228 d~~tG~  233 (238)
T PF13360_consen  228 DLKTGK  233 (238)
T ss_dssp             ETTTTE
T ss_pred             ECCCCC
Confidence            999997

...

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.93  E-value=0.00019  Score=71.84  Aligned_cols=154  Identities=12%  Similarity=0.145  Sum_probs=103.2

Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeE-EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce---
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---  348 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---  348 (502)
                      ++... ..+++.|+.-|.|.+|+-..++... ...+..+.+..+..++.. .++++|+..|.|.++-+.........   
T Consensus        40 c~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t  117 (726)
T KOG3621|consen   40 CVDAT-EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVT  117 (726)
T ss_pred             EeecC-CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeec
Confidence            34444 4599999999999999966554322 222344556667788887 88999999999999988764433211   


Q ss_pred             ---EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769          349 ---WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       349 ---~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                         ..|+..|++++|++++. .+++|...|.|.+-.+..... .    ......+..-.+.|..+.+..   .+|+.++.
T Consensus       118 ~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~-~----~~~~q~il~~ds~IVQlD~~q---~~LLVStl  188 (726)
T KOG3621|consen  118 PCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQA-F----LSKSQEILSEDSEIVQLDYLQ---SYLLVSTL  188 (726)
T ss_pred             cccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhh-h----ccccceeeccCcceEEeeccc---ceehHhhh
Confidence               13567899999999876 799999999999888776200 0    133445555677888888775   33433333


Q ss_pred             CCcEEEEECCCCC
Q 010769          426 DKMVKLWDLSNNQ  438 (502)
Q Consensus       426 dg~i~vwd~~~~~  438 (502)
                      -. ..++++....
T Consensus       189 ~r-~~Lc~tE~et  200 (726)
T KOG3621|consen  189 TR-CILCQTEAET  200 (726)
T ss_pred             hh-hheeecchhH
Confidence            33 3355555443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.93  E-value=0.0028  Score=56.28  Aligned_cols=147  Identities=10%  Similarity=0.024  Sum_probs=95.3

Q ss_pred             cCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCC
Q 010769          275 NKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       275 ~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  354 (502)
                      .++...+++.||..+.+.--|..+|+....-. -...+.+-+.- -| .+++.|.+.|.+++.+..++.....+.....-
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v   95 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIWNFVILETV   95 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence            34446789999999999999999998765432 12233332222 23 67999999999999999998665433333222


Q ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      -......+++. ++++|+.|++.+..|.++.         .++++.+...+...+-++.|- +..|+.+...|.|.--..
T Consensus        96 k~~a~~d~~~g-lIycgshd~~~yalD~~~~---------~cVykskcgG~~f~sP~i~~g-~~sly~a~t~G~vlavt~  164 (354)
T KOG4649|consen   96 KVRAQCDFDGG-LIYCGSHDGNFYALDPKTY---------GCVYKSKCGGGTFVSPVIAPG-DGSLYAAITAGAVLAVTK  164 (354)
T ss_pred             ccceEEcCCCc-eEEEecCCCcEEEeccccc---------ceEEecccCCceeccceecCC-CceEEEEeccceEEEEcc
Confidence            22334456555 8999999999999999986         667776544444444455552 244444555555444433


Q ss_pred             C
Q 010769          435 S  435 (502)
Q Consensus       435 ~  435 (502)
                      +
T Consensus       165 ~  165 (354)
T KOG4649|consen  165 N  165 (354)
T ss_pred             C
Confidence            3

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=0.0052  Score=60.64  Aligned_cols=212  Identities=13%  Similarity=0.114  Sum_probs=141.4

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEeCCCCCCc
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHS  345 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~  345 (502)
                      .-..++.++.+.+..++...++.|.+.|..+.+.......-. ....+++++++..+.++-.  .++++.+.|..+....
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            345678888866677777777999999988887777664322 6778999999955555544  3788999998887766


Q ss_pred             cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769          346 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      .. ......-..++++|++...+++-..++.|.++|........ .   ....... -...-..+.++|++.+..++...
T Consensus       154 ~~-~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         154 AT-IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVG-VGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             EE-EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---ccccccc-cCCCCceEEECCCCCEEEEEecc
Confidence            54 33332338899999988666666689999999976542110 0   0000111 12334678899998545555444


Q ss_pred             C--CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          426 D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       426 d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +  +.+...|..++............ ....+.++|+|.++.+.-+..+.+.+-|..+......
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            4  68999998887632211112222 4567899999997555545568899999888776554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.85  E-value=0.0061  Score=60.74  Aligned_cols=232  Identities=14%  Similarity=0.190  Sum_probs=112.0

Q ss_pred             ccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccc
Q 010769          188 IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD  267 (502)
Q Consensus       188 ~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  267 (502)
                      ....+|..+.+       +|+|+++++++ +|.-.|+......                                ....+
T Consensus        30 ~~~~~p~~ls~-------npngr~v~V~g-~geY~iyt~~~~r--------------------------------~k~~G   69 (443)
T PF04053_consen   30 SCEIYPQSLSH-------NPNGRFVLVCG-DGEYEIYTALAWR--------------------------------NKAFG   69 (443)
T ss_dssp             E-SS--SEEEE--------TTSSEEEEEE-TTEEEEEETTTTE--------------------------------EEEEE
T ss_pred             CCCcCCeeEEE-------CCCCCEEEEEc-CCEEEEEEccCCc--------------------------------ccccC
Confidence            34445666655       79999999955 6777777732100                                01235


Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  347 (502)
                      .-..+.|.+.  +.+|+-...++|.|+.--.......++. ...+..|-.   | .+|+..+.+ .|.+||+.+++.+. 
T Consensus        70 ~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~-  140 (443)
T PF04053_consen   70 SGLSFVWSSR--NRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIR-  140 (443)
T ss_dssp             E-SEEEE-TS--SEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEE-
T ss_pred             ceeEEEEecC--ccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---C-cEEEEECCC-CEEEEEhhHcceee-
Confidence            5667889884  4577777788999974333333334432 123444433   5 666666544 89999999887654 


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCC--CCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA--KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ..... +|..|.|++++. +++..+. ..+.+++....  ..............+......|.+..|..+  -++.| +.
T Consensus       141 ~i~v~-~vk~V~Ws~~g~-~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYt-T~  214 (443)
T PF04053_consen  141 RIDVS-AVKYVIWSDDGE-LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYT-TS  214 (443)
T ss_dssp             EESS--E-EEEEE-TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--T
T ss_pred             EEecC-CCcEEEEECCCC-EEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEE-cC
Confidence            22222 389999999876 5555554 45666654321  000000000133444433677888999863  33444 33


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      . .++.  +..+....+..+.   .++.=+...|... .+.....++.|..+.+..
T Consensus       215 ~-~lkY--l~~Ge~~~i~~ld---~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  215 N-HLKY--LVNGETGIIAHLD---KPLYLLGYLPKEN-RLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             T-EEEE--EETTEEEEEEE-S---S--EEEEEETTTT-EEEEE-TT--EEEEE--H
T ss_pred             C-eEEE--EEcCCcceEEEcC---CceEEEEEEccCC-EEEEEECCCCEEEEEECH
Confidence            3 6766  4455533344433   4566677777555 466678888888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.83  E-value=0.0024  Score=62.64  Aligned_cols=213  Identities=16%  Similarity=0.148  Sum_probs=117.7

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCe-------------------------------------------eeEE
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGK-------------------------------------------CNLT  304 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~-------------------------------------------~~~~  304 (502)
                      .|+.++|.+. ..-|+.|...|.|.||.....+                                           +...
T Consensus         3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            4888999998 4588999999999998653211                                           1111


Q ss_pred             eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE--------eecCCeEEEEeCC---C----CCCEEE
Q 010769          305 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLAWDP---H----AEHSFV  369 (502)
Q Consensus       305 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------~~~~~v~~v~~~p---~----~~~~l~  369 (502)
                      +....++|++++.+.-|  +++.|..+|.+.|.|+|.+..+....        .....++++.|..   .    ..-+++
T Consensus        82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            22346899999998777  89999999999999999876543211        1223577787752   1    123789


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEE-EcCC--------------------CCCEEEEEeCCCc
Q 010769          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS-YNPL--------------------VPNLLATGSTDKM  428 (502)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~sp~--------------------~~~~l~t~s~dg~  428 (502)
                      +|+..|.+.+|.+-.....  ............+.++|..+. |+.+                    .+.++++++ +..
T Consensus       160 vGTn~G~v~~fkIlp~~~g--~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~  236 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNG--RFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESD  236 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG---EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSE
T ss_pred             EEeCCCCEEEEEEecCCCC--ceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccc
Confidence            9999999999988521100  000011111124556665554 3211                    123555544 667


Q ss_pred             EEEEECCCCCeeEEEEecCCCCCEEEEEEc----CCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFS----EDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s----pd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ++++...+.+..  .......-....+.+-    ..+.+.|++-..+|.|++|.+-.-+.+.+.
T Consensus       237 irv~~~~~~k~~--~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~  298 (395)
T PF08596_consen  237 IRVFKPPKSKGA--HKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV  298 (395)
T ss_dssp             EEEE-TT---EE--EEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred             eEEEeCCCCccc--ceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence            999999887632  2222221223344453    123346888899999999999887776544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.83  E-value=0.00053  Score=71.91  Aligned_cols=144  Identities=16%  Similarity=0.236  Sum_probs=98.5

Q ss_pred             cEEEEE-ECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC------CCEEEEEeCCCeEEEEECCCCCCCCCCCCCC
Q 010769          323 QILLSG-SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ  395 (502)
Q Consensus       323 ~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  395 (502)
                      ++|+.. .....|+-.|+..++.+. .|.....+.-..+.|+.      +...++|-.+..|..||.|....       +
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~-eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-------k  565 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVE-EWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-------K  565 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEE-EeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-------c
Confidence            444433 346788888999888765 56555544444455531      23567788899999999997521       2


Q ss_pred             ccEE---EecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC
Q 010769          396 SSFT---LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       396 ~~~~---~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg  472 (502)
                      .+..   .-......+|++-+.+  .+||+|+.+|.||+||--..+  ....+++-..+|.+|..+.||+|+|||+  +.
T Consensus       566 ~v~~~~k~Y~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc--~t  639 (794)
T PF08553_consen  566 LVDSQSKQYSSKNNFSCFATTED--GYIAVGSNKGDIRLYDRLGKR--AKTALPGLGDPIIGIDVTADGKWILATC--KT  639 (794)
T ss_pred             eeeccccccccCCCceEEEecCC--ceEEEEeCCCcEEeecccchh--hhhcCCCCCCCeeEEEecCCCcEEEEee--cc
Confidence            2211   1123456777777765  589999999999999953322  3445566678999999999999988875  45


Q ss_pred             cEEEEECC
Q 010769          473 KLEIWDTL  480 (502)
Q Consensus       473 ~i~vwd~~  480 (502)
                      .|.|+++.
T Consensus       640 yLlLi~t~  647 (794)
T PF08553_consen  640 YLLLIDTL  647 (794)
T ss_pred             eEEEEEEe
Confidence            78888874

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.82  E-value=0.011  Score=58.82  Aligned_cols=174  Identities=10%  Similarity=0.125  Sum_probs=89.5

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe-------ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe-
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-  338 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd-  338 (502)
                      +.|.++.|+.+ . .|+.-..||++++||+.... ...+       .-....+....+...| -.++  ..++.+.+.. 
T Consensus        81 ~~iv~~~wt~~-e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G-ivvL--t~~~~~~~v~n  154 (410)
T PF04841_consen   81 GRIVGMGWTDD-E-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG-IVVL--TGNNRFYVVNN  154 (410)
T ss_pred             CCEEEEEECCC-C-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC-EEEE--CCCCeEEEEeC
Confidence            78999999886 4 56677899999999986333 1111       1111222223333345 3333  3344444432 


Q ss_pred             CCCCCCccceEeecCCeE---------E-EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCee
Q 010769          339 ARISTHSGFKWAVAADVE---------S-LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  408 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~---------~-v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~  408 (502)
                      ..................         . ..++.+.. ..+....++.+.+.+-...            ..+. ..+++.
T Consensus       155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~------------~~i~-~~~~i~  220 (410)
T PF04841_consen  155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSF------------KQID-SDGPII  220 (410)
T ss_pred             ccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccc------------cccc-CCCCeE
Confidence            221111010000011000         0 12232222 3333344455554433221            0111 246899


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC
Q 010769          409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~  462 (502)
                      .+++||++ ++||.-..+|.+.+.+..-.+..+..... .......+.|+-+..
T Consensus       221 ~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  221 KIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDA  272 (410)
T ss_pred             EEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCc
Confidence            99999998 89999999999999876655533333222 234556777776653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.80  E-value=0.0096  Score=58.37  Aligned_cols=89  Identities=16%  Similarity=0.143  Sum_probs=57.1

Q ss_pred             cEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC----CEEEEEEc--------------
Q 010769          397 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG----AVFSVAFS--------------  458 (502)
Q Consensus       397 ~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~----~v~~~~~s--------------  458 (502)
                      .+.+......+.+++.+|.+ ++.|+...=|.|.++|+.++....+  .++...    .+....-.              
T Consensus       300 r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vvrm--WKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~  376 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVVRM--WKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS  376 (415)
T ss_pred             EEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhhhh--hccCccceEEEEEeecccccccccccccCCCC
Confidence            34455566779999999997 8888877779999999988753221  111111    01000000              


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          459 EDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       459 pd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ....+|++=+-..|.|.||.++++..+...
T Consensus       377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  377 RFALFLVIYAPRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             cceEEEEEEeccCCeEEEEecCCCCEEEEE
Confidence            012345666677899999999999987654

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.80  E-value=0.0056  Score=62.20  Aligned_cols=159  Identities=10%  Similarity=0.039  Sum_probs=98.5

Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE------------------------
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------------------------  329 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~------------------------  329 (502)
                      +.|++..+..+.-..+.+.+.|..+.+...++.- ......+++++++ .++++.+                        
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            3445332223333446677778777766665542 2233455666666 3443332                        


Q ss_pred             ----------------CCCcEEEEeCCC----CCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 010769          330 ----------------FDRSVVMKDARI----STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP  389 (502)
Q Consensus       330 ----------------~dg~i~vwd~~~----~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~  389 (502)
                                      .++.|.+.|.++    ................+.++|++..+++++..+..|.++|+.+.....
T Consensus       278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence                            124578888776    333444556777888999999999888888889999999998863210


Q ss_pred             CC--CCC-CccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          390 DS--TSQ-QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       390 ~~--~~~-~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      ..  ... ..+..... ...-...+|.+.| +...|...|..|..|++..
T Consensus       358 ~~~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        358 DGKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hccCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence            00  000 11222222 2233567788887 7888888899999999876

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.80  E-value=0.033  Score=55.89  Aligned_cols=254  Identities=14%  Similarity=0.203  Sum_probs=130.8

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC-
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP-  219 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg-  219 (502)
                      .+..+.++|++++||.+-..+..-...+++++...+   .+.. .....+.+ ..+.|       .++++.|+....+. 
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~-d~i~~~~~-~~~~W-------~~d~~~~~y~~~~~~  192 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLP-DGIENPKF-SSVSW-------SDDGKGFFYTRFDED  192 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEE-EEEEEEES-EEEEE-------CTTSSEEEEEECSTT
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcC-Cccccccc-ceEEE-------eCCCCEEEEEEeCcc
Confidence            345788999999999886555443567777777665   3322 11111111 22777       57777666554332 


Q ss_pred             ----------cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC
Q 010769          220 ----------AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  289 (502)
Q Consensus       220 ----------~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg  289 (502)
                                .|+.|.+.+..... ..++                      ....+......+..+++++.+++......
T Consensus       193 ~~~~~~~~~~~v~~~~~gt~~~~d-~lvf----------------------e~~~~~~~~~~~~~s~d~~~l~i~~~~~~  249 (414)
T PF02897_consen  193 QRTSDSGYPRQVYRHKLGTPQSED-ELVF----------------------EEPDEPFWFVSVSRSKDGRYLFISSSSGT  249 (414)
T ss_dssp             TSS-CCGCCEEEEEEETTS-GGG--EEEE----------------------C-TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred             cccccCCCCcEEEEEECCCChHhC-eeEE----------------------eecCCCcEEEEEEecCcccEEEEEEEccc
Confidence                      36666665322110 1111                      11112122567888999665555454433


Q ss_pred             ---cEEEEECCCC----eeeEEeccCCCCe-EEEEEcCCCCcEEEEEE---CCCcEEEEeCCCCCCcc---ceEeecCC-
Q 010769          290 ---QVKIWDVAAG----KCNLTLEHHTDKV-QAVAWNHHSPQILLSGS---FDRSVVMKDARISTHSG---FKWAVAAD-  354 (502)
Q Consensus       290 ---~v~vwd~~~~----~~~~~~~~h~~~v-~~l~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~---~~~~~~~~-  354 (502)
                         .|.+.++..+    .....+......+ ..+... .+ .+++...   ..+.|...++.......   ....+... 
T Consensus       250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~  327 (414)
T PF02897_consen  250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV  327 (414)
T ss_dssp             SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred             cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce
Confidence               4778888764    2233333333334 334333 33 4554443   24677777887766421   23334443 


Q ss_pred             -eEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEEEeC---CC
Q 010769          355 -VESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGST---DK  427 (502)
Q Consensus       355 -v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~---dg  427 (502)
                       +..+..  .+..+++....++  .|+++++...         .....+.. -.+.|..+...+.++.+.++.+.   -+
T Consensus       328 ~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~---------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~  396 (414)
T PF02897_consen  328 SLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDG---------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPP  396 (414)
T ss_dssp             EEEEEEE--ETTEEEEEEEETTEEEEEEEETT-T---------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEE
T ss_pred             eEEEEEE--ECCEEEEEEEECCccEEEEEECCCC---------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCC
Confidence             444444  3455666666666  4788888822         23333332 23445666666666555555443   35


Q ss_pred             cEEEEECCCCCeeEE
Q 010769          428 MVKLWDLSNNQPSCI  442 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~  442 (502)
                      ++..||+.+++...+
T Consensus       397 ~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  397 TVYRYDLATGELTLL  411 (414)
T ss_dssp             EEEEEETTTTCEEEE
T ss_pred             EEEEEECCCCCEEEE
Confidence            688899998875443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.79  E-value=0.021  Score=58.42  Aligned_cols=233  Identities=13%  Similarity=0.109  Sum_probs=126.0

Q ss_pred             CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccce-eeEEecCCCCcEEEEEe--
Q 010769          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV-LGLAWNKEFRNILASAS--  286 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~~l~sgs--  286 (502)
                      ..+++++.+|.|.-+|..+++.+-.......               .       .....+ .+..+..   .+++.++  
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~---------------~-------~~~~~i~ssP~v~~---~~v~vg~~~  165 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQ---------------V-------PPGYTMTGAPTIVK---KLVIIGSSG  165 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCC---------------c-------CcceEecCCCEEEC---CEEEEeccc
Confidence            6888888999999999987654432111000               0       000001 0111111   2444443  


Q ss_pred             -------cCCcEEEEECCCCeeeEEeccCCCC--------------------e-EEEEEcCCCCcEEEEEECCC------
Q 010769          287 -------ADKQVKIWDVAAGKCNLTLEHHTDK--------------------V-QAVAWNHHSPQILLSGSFDR------  332 (502)
Q Consensus       287 -------~Dg~v~vwd~~~~~~~~~~~~h~~~--------------------v-~~l~~~~~~~~~l~s~~~dg------  332 (502)
                             .++.|..+|..+|+.+..+......                    + .+..+.+.+ .+++.++.++      
T Consensus       166 ~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~  244 (488)
T cd00216         166 AEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWG  244 (488)
T ss_pred             cccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccC
Confidence                   4678999999999988776532110                    1 122333334 4666676554      


Q ss_pred             ------------cEEEEeCCCCCCccceEeecCCeE------EEEeC----CCC--CCEEEEEeCCCeEEEEECCCCCCC
Q 010769          333 ------------SVVMKDARISTHSGFKWAVAADVE------SLAWD----PHA--EHSFVVSLEDGTIKGFDIRTAKSD  388 (502)
Q Consensus       333 ------------~i~vwd~~~~~~~~~~~~~~~~v~------~v~~~----p~~--~~~l~~~~~dg~i~i~d~~~~~~~  388 (502)
                                  .|..+|..+++..-..........      ...+.    -++  ...+++++.+|.+..+|.+++   
T Consensus       245 ~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG---  321 (488)
T cd00216         245 GRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG---  321 (488)
T ss_pred             CccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC---
Confidence                        688888887765421111111000      00110    111  125788889999999999998   


Q ss_pred             CCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE------------------eCCCcEEEEECCCCCeeEEEEecCC--
Q 010769          389 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG------------------STDKMVKLWDLSNNQPSCIASRNPK--  448 (502)
Q Consensus       389 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~------------------s~dg~i~vwd~~~~~~~~~~~~~~~--  448 (502)
                            +.++.....   ...++.+|   ..++.+                  ..+|.|.-.|+.+++.  +......  
T Consensus       322 ------~~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~--~W~~~~~~~  387 (488)
T cd00216         322 ------KLISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV--VWEKREGTI  387 (488)
T ss_pred             ------cEeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE--eeEeeCCcc
Confidence                  556554321   11223333   222221                  2357788888888873  3333221  


Q ss_pred             C------CCE--EEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          449 A------GAV--FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       449 ~------~~v--~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .      .+.  ..+..  .+. +|.+++.+|.|+.+|..+++.+-+.
T Consensus       388 ~~~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG~~lW~~  432 (488)
T cd00216         388 RDSWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTGKELWKF  432 (488)
T ss_pred             ccccccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCCceeeEE
Confidence            0      111  11222  334 4777889999999999999987553

The alignment model contains an 8-bladed beta-propeller.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.77  E-value=0.015  Score=54.75  Aligned_cols=238  Identities=18%  Similarity=0.164  Sum_probs=128.5

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .++.|++|+.+| |.++++.....  +..                          ..+...|..|...+.. +.|++-+ 
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~--~~~--------------------------i~~~~~I~ql~vl~~~-~~llvLs-   54 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSK--PTR--------------------------ILKLSSITQLSVLPEL-NLLLVLS-   54 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCcc--cee--------------------------EeecceEEEEEEeccc-CEEEEEc-
Confidence            589999999998 88988821111  000                          0122339999999984 4554443 


Q ss_pred             CCcEEEEECCCCeeeEEe--------------ccCCCCeEEEE--EcCCCCcEEEEEECCCcEEEEeCCCCC----Cccc
Q 010769          288 DKQVKIWDVAAGKCNLTL--------------EHHTDKVQAVA--WNHHSPQILLSGSFDRSVVMKDARIST----HSGF  347 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~--------------~~h~~~v~~l~--~~~~~~~~l~s~~~dg~i~vwd~~~~~----~~~~  347 (502)
                      |+.+.++++..-......              ......+...+  -...+ ...++.....+|.+|......    ....
T Consensus        55 d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~k  133 (275)
T PF00780_consen   55 DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLLK  133 (275)
T ss_pred             CCccEEEEchhhccccccccccccccccccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCcccccceeE
Confidence            599999998754433210              11233444444  12333 344445555689998887642    1223


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCc---cEEEecCCCCeeEEEEcCCCCCEEEEEe
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS---SFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      .......+.+++|.+   ..+++|..++ ..+.|+.++....-......   .........++..+.... + .+|++. 
T Consensus       134 e~~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-e~Ll~~-  206 (275)
T PF00780_consen  134 EISLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-N-EFLLCY-  206 (275)
T ss_pred             EEEcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-c-eEEEEe-
Confidence            456678899999984   3577776544 77888886532110000000   000111223444444443 3 455543 


Q ss_pred             CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                       +..-.+.|... ++.....+.- ...+.++++.  .+|+++. +. +.|.||++.+++.++..-..
T Consensus       207 -~~~g~fv~~~G-~~~r~~~i~W-~~~p~~~~~~--~pyli~~-~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  207 -DNIGVFVNKNG-EPSRKSTIQW-SSAPQSVAYS--SPYLIAF-SS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             -cceEEEEcCCC-CcCcccEEEc-CCchhEEEEE--CCEEEEE-CC-CEEEEEECcCCcEEEEEECC
Confidence             33344445433 3222112221 2245556663  4565654 33 56999999999888766543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.75  E-value=0.0013  Score=50.97  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=72.1

Q ss_pred             eeeEEe---cCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc
Q 010769          269 VLGLAW---NKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       269 V~~l~~---~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  345 (502)
                      |++|++   ..++.+.|+.||.|..|++|+-  ...+..+. ..+.|++|.-...+  .|+.+..+|+|-+|+-..   .
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~---R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ---R   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcc---e
Confidence            445544   4566789999999999999983  46677776 46778888877664  699999999999997632   1


Q ss_pred             cceEeecCCeEEEEeC---CCCCCEEEEEeCCCeEE
Q 010769          346 GFKWAVAADVESLAWD---PHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~---p~~~~~l~~~~~dg~i~  378 (502)
                      ......+..+.++.+.   .+|..-|++|-.+|.|-
T Consensus        74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            1222334456666553   34445799999999874

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.71  E-value=0.011  Score=58.91  Aligned_cols=180  Identities=12%  Similarity=0.091  Sum_probs=93.3

Q ss_pred             cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe---ecCCe-----EEEEeC
Q 010769          290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADV-----ESLAWD  361 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v-----~~v~~~  361 (502)
                      .|+||+. .|+.+.++.--.+.+.++.|+.+.  .|++...||.+++||+....  .....   ....|     ....+.
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccC
Confidence            5999984 567777765445899999998865  57778899999999987433  11111   11112     112222


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCC-CCC-CCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          362 PHAEHSFVVSLEDGTIKGFDIRTAKSD-PDS-TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       362 p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~-~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      . ++  +++-+.++.+.+..--..... ... ...........+........++.+. ...+....++.+.+.+-...+ 
T Consensus       137 ~-~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~-  211 (410)
T PF04841_consen  137 K-NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFK-  211 (410)
T ss_pred             C-CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEccccc-
Confidence            2 22  444445565555432221100 000 0000000011111110012233333 334444444555544322211 


Q ss_pred             eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                          ... ..+++..|+.||++++ ||.-..+|.+.|....-.+.+
T Consensus       212 ----~i~-~~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf~~~~  251 (410)
T PF04841_consen  212 ----QID-SDGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDFSEKL  251 (410)
T ss_pred             ----ccc-CCCCeEEEEECCCCCE-EEEEECCCCEEEEECccccee
Confidence                011 2468999999999995 888888999988876554444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.71  E-value=0.0037  Score=61.39  Aligned_cols=252  Identities=12%  Similarity=0.060  Sum_probs=125.0

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcc----------hhhhhh-ccc----c-CCccccccccCCcccce
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGID----------EEKKKK-KSK----K-GKKSSIKYKKGSHTDSV  269 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~----------~~~~~~-~~~----~-~~~~~~~~~~~~h~~~V  269 (502)
                      ++...-||+|...|.|.||.+...+...........+          ...+.. ...    . +....+...+....++|
T Consensus        10 a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~v   89 (395)
T PF08596_consen   10 APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPV   89 (395)
T ss_dssp             ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SE
T ss_pred             cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCCcE
Confidence            4667789999999999999875432221000000000          000000 000    0 11123333445568999


Q ss_pred             eeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe--cc------CCCCeEEEEEcC---CC----CcEEEEEECCCcE
Q 010769          270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EH------HTDKVQAVAWNH---HS----PQILLSGSFDRSV  334 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~--~~------h~~~v~~l~~~~---~~----~~~l~s~~~dg~i  334 (502)
                      ++++.+.- + ++|.|..+|++.|.|++....+..-  ..      ....|+++.|.-   .+    .-.|++|+..|.+
T Consensus        90 tal~~S~i-G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v  167 (395)
T PF08596_consen   90 TALKNSDI-G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNV  167 (395)
T ss_dssp             EEEEE-BT-S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEE
T ss_pred             eEEecCCC-c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCE
Confidence            99999865 4 9999999999999999887776552  22      345688888861   11    1478899999999


Q ss_pred             EEEeCCCC--C-CccceE----eecCCeEEEE-eCCCC-------------------CCEEEEEeCCCeEEEEECCCCCC
Q 010769          335 VMKDARIS--T-HSGFKW----AVAADVESLA-WDPHA-------------------EHSFVVSLEDGTIKGFDIRTAKS  387 (502)
Q Consensus       335 ~vwd~~~~--~-~~~~~~----~~~~~v~~v~-~~p~~-------------------~~~l~~~~~dg~i~i~d~~~~~~  387 (502)
                      .+|.+.-.  . ......    .+.+.+..+. ++.+.                   -.-+++......++++...+.  
T Consensus       168 ~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~--  245 (395)
T PF08596_consen  168 LTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKS--  245 (395)
T ss_dssp             EEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----
T ss_pred             EEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCC--
Confidence            99987521  1 111111    2234444443 32211                   012444455778999988765  


Q ss_pred             CCCCCCCCccEEEecCCCCeeEEEEcC----CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC--CCCCEEEEEEcCCC
Q 010769          388 DPDSTSQQSSFTLHAHDKAVCTISYNP----LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSEDS  461 (502)
Q Consensus       388 ~~~~~~~~~~~~~~~h~~~v~~l~~sp----~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~spd~  461 (502)
                             +...........+.++.+-+    .+...|++-..+|.|++|.+..-+......+..  ....+....++++|
T Consensus       246 -------k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  246 -------KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             --------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred             -------cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence                   33333222222333344421    123788888999999999999887544444321  11234456778999


Q ss_pred             CcEEEEEe
Q 010769          462 PFVLAIGG  469 (502)
Q Consensus       462 ~~llasg~  469 (502)
                      .. ++-.|
T Consensus       319 di-~~~~g  325 (395)
T PF08596_consen  319 DI-FYWTG  325 (395)
T ss_dssp             -E-EEE-S
T ss_pred             CE-EEEeC
Confidence            84 44433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.0032  Score=61.44  Aligned_cols=145  Identities=18%  Similarity=0.258  Sum_probs=100.9

Q ss_pred             cEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC------EEEEEeCCCeEEEEECCCCCCCCCCCCCCc
Q 010769          323 QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH------SFVVSLEDGTIKGFDIRTAKSDPDSTSQQS  396 (502)
Q Consensus       323 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  396 (502)
                      -+|.++..-..++-.|+..++.+. .|.....|+-+.+.|+...      .-++|-.+..|.-||.|-...       ..
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVe-EWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------~k  418 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVE-EWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------NK  418 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeee-EeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc-------ce
Confidence            345556666778888888887665 6777777888888886431      345677899999999995421       12


Q ss_pred             cEEEecCC----CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC
Q 010769          397 SFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       397 ~~~~~~h~----~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg  472 (502)
                      +....+|.    ....|++-..  ..++|+||.+|.|++||--..+  ....+++-..+|..+..+.+|.++|+|+  +.
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri~~~--AKTAlPgLG~~I~hVdvtadGKwil~Tc--~t  492 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDRIGRR--AKTALPGLGDAIKHVDVTADGKWILATC--KT  492 (644)
T ss_pred             eeeeeccccccccccceeeecC--CceEEEeecCCcEEeehhhhhh--hhhcccccCCceeeEEeeccCcEEEEec--cc
Confidence            22223332    3345555554  4699999999999999973332  3445677788999999999999877754  55


Q ss_pred             cEEEEECCC
Q 010769          473 KLEIWDTLS  481 (502)
Q Consensus       473 ~i~vwd~~~  481 (502)
                      .+.+-++.-
T Consensus       493 yLlLi~t~~  501 (644)
T KOG2395|consen  493 YLLLIDTLI  501 (644)
T ss_pred             EEEEEEEec
Confidence            788877643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.69  E-value=0.038  Score=52.13  Aligned_cols=251  Identities=15%  Similarity=0.157  Sum_probs=127.7

Q ss_pred             cccccccCCCceEEEEEecC--Cc---ceeEEEEEecCCCCCCceeeeeccccCCCcceee-eecCCCCCCCCCCEEEEe
Q 010769          142 LEDMTINPNDAVIVCARNED--DV---SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMA-WLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~--~~---~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-w~~~~~~~s~~~~~la~g  215 (502)
                      .-.+.++|+++.+.++.+--  ..   .+=-|-+|+..     .|....++.+|..|-... -.....+.+.+++++++.
T Consensus        38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-----TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~  112 (342)
T PF06433_consen   38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-----TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQ  112 (342)
T ss_dssp             SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-----TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEE
T ss_pred             CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-----cCcccceEecCCcchheecccccceEEccCCcEEEEE
Confidence            34467899999988764210  00   00023334433     556666777776422111 011112235566666655


Q ss_pred             cCC--CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769          216 SME--PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       216 ~~d--g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v  293 (502)
                      ...  ..|.|-|+....-+..                               -..--|...-|.+..-+.+-|.||++.-
T Consensus       113 N~TPa~SVtVVDl~~~kvv~e-------------------------------i~~PGC~~iyP~~~~~F~~lC~DGsl~~  161 (342)
T PF06433_consen  113 NFTPATSVTVVDLAAKKVVGE-------------------------------IDTPGCWLIYPSGNRGFSMLCGDGSLLT  161 (342)
T ss_dssp             EESSSEEEEEEETTTTEEEEE-------------------------------EEGTSEEEEEEEETTEEEEEETTSCEEE
T ss_pred             ccCCCCeEEEEECCCCceeee-------------------------------ecCCCEEEEEecCCCceEEEecCCceEE
Confidence            443  3555666543111110                               0111122223443446888899999999


Q ss_pred             EECC-CCeeeEEe----ccCCCCeE-EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEee-----------cCCe
Q 010769          294 WDVA-AGKCNLTL----EHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAV-----------AADV  355 (502)
Q Consensus       294 wd~~-~~~~~~~~----~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~-----------~~~v  355 (502)
                      ..+. .|+...+.    ..-..++. .-.+...+ ..++-.++.|.|+-.|+....... ..+..           ++.-
T Consensus       162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~  240 (342)
T PF06433_consen  162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW  240 (342)
T ss_dssp             EEETSTSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred             EEECCCCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence            9887 55544222    11122222 22344444 345557889999998887654221 11111           2233


Q ss_pred             EEEEeCCCCCCEEEEEe-------CCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE-eC
Q 010769          356 ESLAWDPHAEHSFVVSL-------EDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-ST  425 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~-------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~-s~  425 (502)
                      .-+++++..+.+++.-.       .++  .|-+||+.+.         +.+.++.. ..++.+|+.+.+..-+|++. ..
T Consensus       241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~  310 (342)
T PF06433_consen  241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------KRVARIPL-EHPIDSIAVSQDDKPLLYALSAG  310 (342)
T ss_dssp             S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------EEEEEEEE-EEEESEEEEESSSS-EEEEEETT
T ss_pred             eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------eEEEEEeC-CCccceEEEccCCCcEEEEEcCC
Confidence            45667765443333221       122  3667777775         66666653 34578999998765566554 45


Q ss_pred             CCcEEEEECCCCCe
Q 010769          426 DKMVKLWDLSNNQP  439 (502)
Q Consensus       426 dg~i~vwd~~~~~~  439 (502)
                      ++.+.+||..+++.
T Consensus       311 ~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  311 DGTLDVYDAATGKL  324 (342)
T ss_dssp             TTEEEEEETTT--E
T ss_pred             CCeEEEEeCcCCcE
Confidence            78999999999984

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.68  E-value=0.059  Score=51.83  Aligned_cols=178  Identities=17%  Similarity=0.179  Sum_probs=90.0

Q ss_pred             cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC---CCc-EEEEeCCCCCCccce-Eee--cCCeEEEEeCC
Q 010769          290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DRS-VVMKDARISTHSGFK-WAV--AADVESLAWDP  362 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~-i~vwd~~~~~~~~~~-~~~--~~~v~~v~~~p  362 (502)
                      .|.--|+.+|+....+. -+..+..+.|+|..+.+|+-|-.   +.. -+||-+++....... ..+  ...+..=-|.|
T Consensus       169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~  247 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP  247 (386)
T ss_dssp             EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred             eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence            45566777777654444 46678889999998776666533   332 366766543321111 111  12234446899


Q ss_pred             CCCCEEEEEeC----CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC-----------
Q 010769          363 HAEHSFVVSLE----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK-----------  427 (502)
Q Consensus       363 ~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg-----------  427 (502)
                      +|..+++.+..    +..|.-+|+.+..         ... +. .......+-.++++ .+++-=+.|.           
T Consensus       248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~---------~~~-~~-~~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~  315 (386)
T PF14583_consen  248 DGSTIWYDSYTPGGQDFWIAGYDPDTGE---------RRR-LM-EMPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYK  315 (386)
T ss_dssp             TSS-EEEEEEETTT--EEEEEE-TTT-----------EEE-EE-EE-SEEEEEE-TTS-SEEEEEE--------------
T ss_pred             CCCEEEEEeecCCCCceEEEeeCCCCCC---------ceE-EE-eCCceeeeEEcCCC-CEEEecCCCCCccccccccce
Confidence            99877776542    3357777777652         111 11 11235556667777 6665534332           


Q ss_pred             -----cEEEEECCCCCeeEEEEe-------cCCCC-CEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          428 -----MVKLWDLSNNQPSCIASR-------NPKAG-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       428 -----~i~vwd~~~~~~~~~~~~-------~~~~~-~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                           .|+++++..++...+...       .++.. .=....|+||++++|.++...|...||=+.
T Consensus       316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence                 466788877664333322       11111 124578999999999999999988887553

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.016  Score=57.11  Aligned_cols=208  Identities=18%  Similarity=0.168  Sum_probs=135.4

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  347 (502)
                      ....+...+.+....++-.....+.+.+............-...-..+..++.+.+.+++...++.|.+.|..+..... 
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~-  110 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG-  110 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee-
Confidence            4556677777544444444444566655552222222221114456788888886677777778999999977655443 


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEe--CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ..........++++|++..+.++-.  .++.+.+.|..+.         ........-..+ ..+++.|++...+++-..
T Consensus       111 ~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~  180 (381)
T COG3391         111 SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---------KVTATIPVGNTP-TGVAVDPDGNKVYVTNSD  180 (381)
T ss_pred             EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC---------eEEEEEecCCCc-ceEEECCCCCeEEEEecC
Confidence            3334447788999998875555555  3788999998876         444444443345 899999999556666668


Q ss_pred             CCcEEEEECCCCCeeEEEE---ecCCCCCEEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCccccc
Q 010769          426 DKMVKLWDLSNNQPSCIAS---RNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAGISN  487 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~spd~~~llasg~~d--g~i~vwd~~~~~~~~~  487 (502)
                      ++.|.+.|........ ..   .......-..+.++|++.++.++-..+  +.+...|..++.....
T Consensus       181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            8999999977765221 11   111123346789999999766665555  6899999988777655

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.66  E-value=0.017  Score=57.71  Aligned_cols=217  Identities=18%  Similarity=0.213  Sum_probs=106.5

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA  220 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~  220 (502)
                      ....+.++|+|+.+++++ ++     +-.+|.....     ....    .+......|       .+ .+.+|+-...+.
T Consensus        34 ~p~~ls~npngr~v~V~g-~g-----eY~iyt~~~~-----r~k~----~G~g~~~vw-------~~-~n~yAv~~~~~~   90 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVCG-DG-----EYEIYTALAW-----RNKA----FGSGLSFVW-------SS-RNRYAVLESSST   90 (443)
T ss_dssp             --SEEEE-TTSSEEEEEE-TT-----EEEEEETTTT-----EEEE----EEE-SEEEE--------T-SSEEEEE-TTS-
T ss_pred             CCeeEEECCCCCEEEEEc-CC-----EEEEEEccCC-----cccc----cCceeEEEE-------ec-CccEEEEECCCe
Confidence            357899999999999943 44     3334432211     1111    111245566       34 444666666889


Q ss_pred             EEEe-eCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          221 IEIW-DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       221 I~iw-dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      |.|+ ++.... .                       +  ...+   ...+..|-.    +.+|+..+. +.|.+||+.++
T Consensus        91 I~I~kn~~~~~-~-----------------------k--~i~~---~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~  136 (443)
T PF04053_consen   91 IKIYKNFKNEV-V-----------------------K--SIKL---PFSVEKIFG----GNLLGVKSS-DFICFYDWETG  136 (443)
T ss_dssp             EEEEETTEE-T-T---------------------------------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT-
T ss_pred             EEEEEcCcccc-c-----------------------e--EEcC---CcccceEEc----CcEEEEECC-CCEEEEEhhHc
Confidence            9996 442100 0                       0  0011   112333322    345655554 48999999999


Q ss_pred             eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC-----------CCccceEeecCCeEEEEeCCCCCCEE
Q 010769          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-----------THSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~~~~~~v~~v~~~p~~~~~l  368 (502)
                      +.++.+...  +|..+.|++++ .+++..+. ..+.+++....           ............|.+.+|..+   .|
T Consensus       137 ~~i~~i~v~--~vk~V~Ws~~g-~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~f  209 (443)
T PF04053_consen  137 KLIRRIDVS--AVKYVIWSDDG-ELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CF  209 (443)
T ss_dssp             -EEEEESS---E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EE
T ss_pred             ceeeEEecC--CCcEEEEECCC-CEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EE
Confidence            999999733  48999999998 66666654 46777665432           011222233678999999864   45


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010769          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      +-.+.. .|+.  +..+          -...+..-..++.=+.+.|.. +.+.....++.|..+.+.
T Consensus       210 iYtT~~-~lkY--l~~G----------e~~~i~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  210 IYTTSN-HLKY--LVNG----------ETGIIAHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEE-TT-EEEE--EETT----------EEEEEEE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--
T ss_pred             EEEcCC-eEEE--EEcC----------CcceEEEcCCceEEEEEEccC-CEEEEEECCCCEEEEEEC
Confidence            544444 7766  3333          223333335566667777754 667777777777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00026  Score=70.10  Aligned_cols=95  Identities=16%  Similarity=0.310  Sum_probs=80.8

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeE-EEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  343 (502)
                      -...|.-+.|+|. ..++|.+..+|.|.+..++ .+.+.++..|...++ +++|.|+| ++|+.|-.||+|++.|+.++.
T Consensus        19 l~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   19 LPINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCC
Confidence            3456888999999 6799999999999999988 788888987888887 99999998 999999999999999999877


Q ss_pred             Cccc-eEeecCCeEEEEeCC
Q 010769          344 HSGF-KWAVAADVESLAWDP  362 (502)
Q Consensus       344 ~~~~-~~~~~~~v~~v~~~p  362 (502)
                      .... ......+|.++-|.+
T Consensus        96 ~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ceeccccccccchheeeccc
Confidence            6542 245567788888875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.62  E-value=0.021  Score=52.18  Aligned_cols=202  Identities=15%  Similarity=0.260  Sum_probs=105.9

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCC--cceeeeecCCCCCCCCCCEEEEecC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF--PLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      ++++.++|.|+.+.|++...+..    .|+.++...    .+...  +.+..+  +=.+++       -.++.|+++--.
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~----~i~els~~G----~vlr~--i~l~g~~D~EgI~y-------~g~~~~vl~~Er   84 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPG----EIYELSLDG----KVLRR--IPLDGFGDYEGITY-------LGNGRYVLSEER   84 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTT----EEEEEETT------EEEE--EE-SS-SSEEEEEE--------STTEEEEEETT
T ss_pred             CCccccEEcCCCCeEEEEECCCC----EEEEEcCCC----CEEEE--EeCCCCCCceeEEE-------ECCCEEEEEEcC
Confidence            45999999999887777765542    677777643    22211  112221  123444       245667776666


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCcccccccc-CCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKK-GSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      ++.+.++++...........                 .......+ ..+...+-.|+|.|.+. .|+.+-...-..||.+
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~  146 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSLDRAD-----------------VQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEV  146 (248)
T ss_dssp             TTEEEEEEE----TT--EEE-----------------EEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEE
T ss_pred             CCcEEEEEEeccccccchhh-----------------ceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEE
Confidence            89999998854221111100                 01111111 24566799999999844 5556666666677766


Q ss_pred             CC---CeeeEE--------eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec----------CCe
Q 010769          297 AA---GKCNLT--------LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA----------ADV  355 (502)
Q Consensus       297 ~~---~~~~~~--------~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----------~~v  355 (502)
                      ..   ...+..        .......+.+++++|..+++++.+..+..|..+|. .++... .....          ...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~-~~~L~~g~~gl~~~~~Qp  224 (248)
T PF06977_consen  147 NGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVS-SLSLDRGFHGLSKDIPQP  224 (248)
T ss_dssp             ESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEE-EEE-STTGGG-SS---SE
T ss_pred             ccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEE-EEEeCCcccCcccccCCc
Confidence            53   211111        11234568899999998788888888999999994 444332 22211          357


Q ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEE
Q 010769          356 ESLAWDPHAEHSFVVSLEDGTIKGF  380 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~~dg~i~i~  380 (502)
                      ..|+|.++|.  +++.++-+..++|
T Consensus       225 EGIa~d~~G~--LYIvsEpNlfy~f  247 (248)
T PF06977_consen  225 EGIAFDPDGN--LYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEEE-TT----EEEEETTTEEEEE
T ss_pred             cEEEECCCCC--EEEEcCCceEEEe
Confidence            8999999763  6666676666554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.60  E-value=0.011  Score=56.98  Aligned_cols=161  Identities=11%  Similarity=0.051  Sum_probs=89.9

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe-eeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~-~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  341 (502)
                      ...++|++|+-..  + .|+.+. .+.|.+|++...+ ....-. .....++++...  + ++++.|..-..+.++..+.
T Consensus        86 ~~~g~V~ai~~~~--~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   86 EVKGPVTAICSFN--G-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EESS-EEEEEEET--T-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEET
T ss_pred             eecCcceEhhhhC--C-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEc
Confidence            3568899998763  3 344433 4789999998777 333222 123367777665  3 5899999988898886554


Q ss_pred             CCC-ccceEe--ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEE---EEcC
Q 010769          342 STH-SGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTI---SYNP  414 (502)
Q Consensus       342 ~~~-~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l---~~sp  414 (502)
                      ... ......  ....++++.+-+++. .++++..+|.|.++.....................- ....|+++   ++.|
T Consensus       159 ~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~  237 (321)
T PF03178_consen  159 ENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIP  237 (321)
T ss_dssp             TTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS-
T ss_pred             cCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeee
Confidence            222 111111  234578888886664 899999999999998864221111100011111222 24557777   5555


Q ss_pred             --CCC-----CEEEEEeCCCcEEEE
Q 010769          415 --LVP-----NLLATGSTDKMVKLW  432 (502)
Q Consensus       415 --~~~-----~~l~t~s~dg~i~vw  432 (502)
                        .+.     ..++.++.+|.|.+.
T Consensus       238 ~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  238 RSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cCCCCcccccceEEEEecCCEEEEE
Confidence              221     247777888888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.59  E-value=0.00012  Score=63.71  Aligned_cols=147  Identities=14%  Similarity=0.106  Sum_probs=82.4

Q ss_pred             cEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec
Q 010769          323 QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA  402 (502)
Q Consensus       323 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  402 (502)
                      ..+...+.+|.|+-++++..+........   +.+..-.+.....+++|+.+|.|++|......        ...-....
T Consensus        31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~---~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g--------~~~d~~~s   99 (238)
T KOG2444|consen   31 HLLRATSADGLVRERKVRKHKESCRSERF---IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEG--------AHSDRVCS   99 (238)
T ss_pred             hhhccccCCcccccchhhhhhhhhhhhhh---hhcceeecccCceEEeecccceEEEecCCccc--------hHHHhhhc
Confidence            34566677889988888765433221111   11111111223369999999999999887331        11111122


Q ss_pred             CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC-CCEEEEEEcCCCCcEEEEE--eCCCcEEEEEC
Q 010769          403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIG--GSKGKLEIWDT  479 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~spd~~~llasg--~~dg~i~vwd~  479 (502)
                      ....|.++.-.-....+.++++.+|.|+.|++.-++.  +-....|. .++..+..+..+. +++.+  |.+..++.|++
T Consensus       100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~--~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV--LGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             ccccceeccccccccceeEEeccCCceeeeccccCce--eeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcch
Confidence            2223333322222225899999999999999988873  33333444 3444444444445 35555  66667777777


Q ss_pred             CCCc
Q 010769          480 LSDA  483 (502)
Q Consensus       480 ~~~~  483 (502)
                      ....
T Consensus       177 e~~~  180 (238)
T KOG2444|consen  177 EKIK  180 (238)
T ss_pred             hhhh
Confidence            5433

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.57  E-value=0.031  Score=54.62  Aligned_cols=201  Identities=16%  Similarity=0.204  Sum_probs=106.1

Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe-cc-------C---------CCCeEEEEEcCCCCcEEEEE
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EH-------H---------TDKVQAVAWNHHSPQILLSG  328 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~-------h---------~~~v~~l~~~~~~~~~l~s~  328 (502)
                      ...+....|+|+ ++.++-.. ++.|.++++.++...+.- .+       -         -+.-..+-|+|++ +.|+..
T Consensus        42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~  118 (353)
T PF00930_consen   42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFL  118 (353)
T ss_dssp             ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEE
T ss_pred             ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEE
Confidence            567889999999 45666554 578999998877544321 12       0         1223578899999 555443


Q ss_pred             E-CCCc-----------------------------------EEEEeCCCCCCccceEe-----ecCCeEEEEeCCCCCCE
Q 010769          329 S-FDRS-----------------------------------VVMKDARISTHSGFKWA-----VAADVESLAWDPHAEHS  367 (502)
Q Consensus       329 ~-~dg~-----------------------------------i~vwd~~~~~~~~~~~~-----~~~~v~~v~~~p~~~~~  367 (502)
                      . .+..                                   +.++++.+++.......     ...-+..+.|.+++..+
T Consensus       119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l  198 (353)
T PF00930_consen  119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL  198 (353)
T ss_dssp             EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred             EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence            3 2322                                   23344444332211111     12237788898876523


Q ss_pred             EEE-EeCCC---eEEEEECCCCCCCCCCCCCCccEEEecCCCCe---eEEEEc-CCCCCEEEEEeCCCcEEE--EECCCC
Q 010769          368 FVV-SLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYN-PLVPNLLATGSTDKMVKL--WDLSNN  437 (502)
Q Consensus       368 l~~-~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~s-p~~~~~l~t~s~dg~i~v--wd~~~~  437 (502)
                      ++. ...+.   .+.++|..++..       ..+. .....+.|   ..+.|. +++..+|.....+|.-+|  ++...+
T Consensus       199 ~~~~~nR~q~~~~l~~~d~~tg~~-------~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~  270 (353)
T PF00930_consen  199 WVQWLNRDQNRLDLVLCDASTGET-------RVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG  270 (353)
T ss_dssp             EEEEEETTSTEEEEEEEEECTTTC-------EEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred             EEEEcccCCCEEEEEEEECCCCce-------eEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence            332 23222   366677766521       2222 22233333   345554 666677777778876544  555555


Q ss_pred             CeeEEEEecCCCCCEEE-EEEcCCCCcEEEEEeCCC--cEEEEECC
Q 010769          438 QPSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKG--KLEIWDTL  480 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~-~~~spd~~~llasg~~dg--~i~vwd~~  480 (502)
                      .   ...+....-.|.. +.|++++..++.++..++  .-.||.+.
T Consensus       271 ~---~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~  313 (353)
T PF00930_consen  271 K---PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS  313 (353)
T ss_dssp             E---EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred             c---eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence            4   3344444555744 778898887777777633  34444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.54  E-value=0.12  Score=54.63  Aligned_cols=299  Identities=14%  Similarity=0.172  Sum_probs=159.9

Q ss_pred             CCccccccccccCCC---c---eEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010769          137 EDSEDLEDMTINPND---A---VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~---~---~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~  210 (502)
                      +-+.+|.|+.|+|.|   +   ++++|...+.   ..+-.+. ...   .+..|.....+.+|-.+-...+    -.+..
T Consensus       528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~---~~~l~~~-pd~---~~~~~~~l~~~~iPRSIl~~~~----e~d~~  596 (1096)
T KOG1897|consen  528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDI---SMILTFL-PDL---ILITHEQLSGEIIPRSILLTTF----EGDIH  596 (1096)
T ss_pred             eecceeEEEecccCCCCCCcceEEEEEeecce---EEEEEEC-CCc---ceeeeeccCCCccchheeeEEe----eccce
Confidence            345689999999873   2   7888887762   1222222 222   5556666677777765544322    34589


Q ss_pred             EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~  290 (502)
                      +|.++..||.+.-|.++........                 .|    +..  -.+.++.--.|+...++.++++| |.-
T Consensus       597 yLlvalgdG~l~~fv~d~~tg~lsd-----------------~K----k~~--lGt~P~~Lr~f~sk~~t~vfa~s-drP  652 (1096)
T KOG1897|consen  597 YLLVALGDGALLYFVLDINTGQLSD-----------------RK----KVT--LGTQPISLRTFSSKSRTAVFALS-DRP  652 (1096)
T ss_pred             EEEEEcCCceEEEEEEEcccceEcc-----------------cc----ccc--cCCCCcEEEEEeeCCceEEEEeC-CCC
Confidence            9999999999998887654332210                 00    001  12345555566666555555544 444


Q ss_pred             EEEEECCCCeeeEE-eccCCCCeE-EEEEcC-CCCcEEEEEECCCcEEEEeCCCCCCc-cceEeecCCeEEEEeCCCCCC
Q 010769          291 VKIWDVAAGKCNLT-LEHHTDKVQ-AVAWNH-HSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       291 v~vwd~~~~~~~~~-~~~h~~~v~-~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~v~~~p~~~~  366 (502)
                      ..+|--+ ++.+.+ +.. . .+. .+.|+. ..+..|+++. .+.+++.-+..-+.. ............+++.+.. .
T Consensus       653 ~viY~~n-~kLv~spls~-k-ev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~s-l  727 (1096)
T KOG1897|consen  653 TVIYSSN-GKLVYSPLSL-K-EVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESS-L  727 (1096)
T ss_pred             EEEEecC-CcEEEeccch-H-HhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccc-e
Confidence            5555433 333221 110 1 111 122322 2223454444 456666665432222 1224455667778887733 2


Q ss_pred             EEEEEeCC--------------CeEEEEECCCCCCCCCCCCCCccEEEecCC-------CCeeEEEEcCCCCCEEEEEeC
Q 010769          367 SFVVSLED--------------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       367 ~l~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ++.+.+.-              ..++++|-.+.            ..+..|.       -.|.++.|..+...++++|..
T Consensus       728 ~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf------------~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~  795 (1096)
T KOG1897|consen  728 TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF------------EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG  795 (1096)
T ss_pred             EEEEEecccccchhhcCCcceEEEEEEecCCce------------eEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence            34433311              12455554443            2233332       235556688774477777763


Q ss_pred             ----------CCcEEEEECCC-CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          426 ----------DKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       426 ----------dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                                .|.|.||.+.. ++...+.... -.+.+.++..- +|+ +||  +-+..|++|+..+.+.++..-+++
T Consensus       796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~Gav~aL~~f-ngk-llA--~In~~vrLye~t~~~eLr~e~~~~  868 (1096)
T KOG1897|consen  796 LVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKGAVYALVEF-NGK-LLA--GINQSVRLYEWTTERELRIECNIS  868 (1096)
T ss_pred             eeccCCCCcccceEEEEEEecCCceeeeeeee-eccceeehhhh-CCe-EEE--ecCcEEEEEEccccceehhhhccc
Confidence                      47788888777 4433333333 34556665443 455 455  455689999999887766554443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.47  E-value=0.0002  Score=62.29  Aligned_cols=107  Identities=12%  Similarity=0.091  Sum_probs=70.2

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      -+.-|++|+.+|.|.+|+..........                          ...-...|.++--+-+...+.++++.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--------------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~  122 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--------------------------VCSGEESIDLGIPNGRDSSLGCVGAQ  122 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHh--------------------------hhcccccceeccccccccceeEEecc
Confidence            3778999999999999998732211111                          01112333333323232458999999


Q ss_pred             CCcEEEEECCCCeeeEEeccCC-CCeEEEEEcCCCCcEEEEE--ECCCcEEEEeCCC
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSG--SFDRSVVMKDARI  341 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~--~~dg~i~vwd~~~  341 (502)
                      ||.|+.|++.-++.+.....|+ .++..+..+..+ .++..+  +.+..++.|++..
T Consensus       123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCceeeeccccCceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence            9999999999988888887787 555555555544 556666  6677777777653

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=0.0044  Score=65.38  Aligned_cols=102  Identities=18%  Similarity=0.253  Sum_probs=74.5

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+.++++|+..|.+-..|+...  +.+                        .+.-..-..+|++++|+.+ +.+++.|-.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~------------------------~~~ne~v~~~Vtsvafn~d-g~~l~~G~~  150 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGP------------------------LHQNERVQGPVTSVAFNQD-GSLLLAGLG  150 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cch------------------------hhcCCccCCcceeeEecCC-CceeccccC
Confidence            3667899999999988887532  111                        0111134589999999999 568999999


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEEE---EEcCCCCcEEEEEECCCcEEEEeC
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAV---AWNHHSPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l---~~~~~~~~~l~s~~~dg~i~vwd~  339 (502)
                      +|.|.+||+.+++.++.+..|..+++++   .|..++ ..++++...|.  +|.+
T Consensus       151 ~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  151 DGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence            9999999999999988887666655544   444555 57888887776  5554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.38  E-value=0.017  Score=55.61  Aligned_cols=175  Identities=14%  Similarity=0.174  Sum_probs=108.2

Q ss_pred             CcEEEEECCCCeeeEEeccC-CCCeEEE---EEcCC---CCcEEEEEEC---------C-CcEEEEeCCCC----CCcc-
Q 010769          289 KQVKIWDVAAGKCNLTLEHH-TDKVQAV---AWNHH---SPQILLSGSF---------D-RSVVMKDARIS----THSG-  346 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h-~~~v~~l---~~~~~---~~~~l~s~~~---------d-g~i~vwd~~~~----~~~~-  346 (502)
                      ..|++.|..+.+.+.++.-. ...+.++   .+..+   ...+|++|+.         . |.|.++++...    .... 
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35888888888777666422 2334444   33332   1367777753         2 88999999884    1111 


Q ss_pred             -ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC--CCCeeEEEEcCCCCCEEEEE
Q 010769          347 -FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       347 -~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~  423 (502)
                       ......++|.+++--  ++ .++++. .+.|.+|++...         ..+.....+  ...++++...  + .+++.|
T Consensus        82 i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~---------~~l~~~~~~~~~~~i~sl~~~--~-~~I~vg  145 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNS---------KTLLKKAFYDSPFYITSLSVF--K-NYILVG  145 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETT---------SSEEEEEEE-BSSSEEEEEEE--T-TEEEEE
T ss_pred             EEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCc---------ccchhhheecceEEEEEEecc--c-cEEEEE
Confidence             223567889888765  23 344443 589999999876         212222222  3356666655  3 688888


Q ss_pred             eCCCcEEEEECCC--CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          424 STDKMVKLWDLSN--NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       424 s~dg~i~vwd~~~--~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ..-..|.++.+..  .+. ...........++++.|-+++. .++++..+|.|.++....
T Consensus       146 D~~~sv~~~~~~~~~~~l-~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  146 DAMKSVSLLRYDEENNKL-ILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             ESSSSEEEEEEETTTE-E-EEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred             EcccCEEEEEEEccCCEE-EEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence            8888888875543  322 3333444456689999987776 588899999999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.34  E-value=0.15  Score=48.35  Aligned_cols=194  Identities=11%  Similarity=0.036  Sum_probs=105.0

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEec----c-CCCCeEEEEEcCCCCcEEEEEEC-----------
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE----H-HTDKVQAVAWNHHSPQILLSGSF-----------  330 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~----~-h~~~v~~l~~~~~~~~~l~s~~~-----------  330 (502)
                      +.+.++.....++ .|+++..  -+.++++.++..+..+.    + -....+.+...|+| .+.++...           
T Consensus        66 ~~~~~~~~~d~~g-~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~  141 (307)
T COG3386          66 GGFSSGALIDAGG-RLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERP  141 (307)
T ss_pred             CCcccceeecCCC-eEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCC
Confidence            3345555444434 4554433  46777776655433321    1 12345677888888 44333222           


Q ss_pred             CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEE
Q 010769          331 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI  410 (502)
Q Consensus       331 dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  410 (502)
                      -|.|+.++. .+........+-...+.++|+|++..++++=+..+.|.-|++.........  ......+....+..-.+
T Consensus       142 ~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~--~~~~~~~~~~~G~PDG~  218 (307)
T COG3386         142 TGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG--RRGFVDFDEEPGLPDGM  218 (307)
T ss_pred             cceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC--cceEEEccCCCCCCCce
Confidence            122333332 223222222334456789999998865666666788998887631100000  11122233345666777


Q ss_pred             EEcCCCCCEEEEEeCCC-cEEEEECCCCCeeEEEEecCCCCCEEEEEEc-CCCCcEEEEEeCC
Q 010769          411 SYNPLVPNLLATGSTDK-MVKLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSK  471 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~llasg~~d  471 (502)
                      +...+| .+-+++...| .|.+|+.. +++  +.........+++++|- |+.+.|++++...
T Consensus       219 ~vDadG-~lw~~a~~~g~~v~~~~pd-G~l--~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         219 AVDADG-NLWVAAVWGGGRVVRFNPD-GKL--LGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EEeCCC-CEEEecccCCceEEEECCC-CcE--EEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            777777 5544444443 89999988 664  33343344667888884 5566567766655

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.33  E-value=0.019  Score=59.61  Aligned_cols=194  Identities=16%  Similarity=0.212  Sum_probs=102.8

Q ss_pred             eeeEEecCCCCcEEEEEecC------CcEEEEECCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECCCc-----EE
Q 010769          269 VLGLAWNKEFRNILASASAD------KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRS-----VV  335 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~D------g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~-----i~  335 (502)
                      -.+++...+  .+.++|+.+      .++..||..+.+-..  .+.......   ....-++.+.++|+.||.     +-
T Consensus       325 ~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~---~v~~l~g~iYavGG~dg~~~l~svE  399 (571)
T KOG4441|consen  325 RVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF---GVAVLDGKLYAVGGFDGEKSLNSVE  399 (571)
T ss_pred             cccEEEECC--EEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc---eeEEECCEEEEEeccccccccccEE
Confidence            445555543  588888888      357788887765332  222111111   111122378899999874     55


Q ss_pred             EEeCCCCCCccc--eEeecCCeEEEEeCCCCCCEEEEEeCCC------eEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769          336 MKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDG------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       336 vwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      .||.++.+-...  ..........+.+   ++.+.++|+.++      ++..||..+..       ...+..+..-....
T Consensus       400 ~YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------W~~~~~M~~~R~~~  469 (571)
T KOG4441|consen  400 CYDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNT-------WTLIAPMNTRRSGF  469 (571)
T ss_pred             EecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCc-------eeecCCcccccccc
Confidence            677665432110  0011112222233   344677776444      47788887653       12222222112222


Q ss_pred             eEEEEcCCCCCEEEEEeCCCc-----EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC-----cEEEE
Q 010769          408 CTISYNPLVPNLLATGSTDKM-----VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIW  477 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg-----~i~vw  477 (502)
                      . ++...  ..+.+.||.|+.     |..||..+.+...+.........+..+.+   +..+.++||.+|     +|..|
T Consensus       470 g-~a~~~--~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~y  543 (571)
T KOG4441|consen  470 G-VAVLN--GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECY  543 (571)
T ss_pred             e-EEEEC--CEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE---CCEEEEEecccCccccceeEEc
Confidence            2 22222  377888887763     78899999886555434333333332332   233788899886     47777


Q ss_pred             ECCCCc
Q 010769          478 DTLSDA  483 (502)
Q Consensus       478 d~~~~~  483 (502)
                      |..+++
T Consensus       544 dp~~d~  549 (571)
T KOG4441|consen  544 DPETDT  549 (571)
T ss_pred             CCCCCc
Confidence            776544

>smart00320 WD40 WD40 repeats

Probab=97.32  E-value=0.00073  Score=41.04  Aligned_cols=39  Identities=33%  Similarity=0.382  Sum_probs=34.2

Q ss_pred             CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769          299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  338 (502)
                      ++++..+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            45667777889999999999988 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.32  E-value=0.14  Score=51.27  Aligned_cols=205  Identities=14%  Similarity=0.149  Sum_probs=110.0

Q ss_pred             cceeeEEecCCCCcEEEEEecCCc----EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC----------C
Q 010769          267 DSVLGLAWNKEFRNILASASADKQ----VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----------R  332 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~----v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----------g  332 (502)
                      ..+..++++|++..++++-+..|.    |+++|+.+++.+...-. ......+.|.+++..++.+....          .
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            345567899997655556566664    99999999977653211 11223499999984444444332          2


Q ss_pred             cEEEEeCCCCCCc-cceEee-cC-C-eEEEEeCCCCCCEEEEEeCCC---eEEEEECCCCCCCCCCCCCCccEEEecCCC
Q 010769          333 SVVMKDARISTHS-GFKWAV-AA-D-VESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDK  405 (502)
Q Consensus       333 ~i~vwd~~~~~~~-~~~~~~-~~-~-v~~v~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~  405 (502)
                      .|+.|.+.+.... ...+.. .. . ...+..++++..+++......   .+.+.++......     ......+..+..
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~-----~~~~~~l~~~~~  277 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP-----DAKPKLLSPRED  277 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS-----S-SEEEEEESSS
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC-----cCCcEEEeCCCC
Confidence            3677777765543 122222 22 2 567888998876555554433   4777788763100     123333443444


Q ss_pred             CeeEEEEcCCCCCEEEEEe---CCCcEEEEECCCCCee-EEEEecCCCC--CEEEEEEcCCCCcEEEEEeCCC--cEEEE
Q 010769          406 AVCTISYNPLVPNLLATGS---TDKMVKLWDLSNNQPS-CIASRNPKAG--AVFSVAFSEDSPFVLAIGGSKG--KLEIW  477 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s---~dg~i~vwd~~~~~~~-~~~~~~~~~~--~v~~~~~spd~~~llasg~~dg--~i~vw  477 (502)
                      .+....-+..+ .+++...   ..+.|.-.++...... ....+..+..  .+..+..  .+.+|++....++  .|++|
T Consensus       278 ~~~~~v~~~~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~  354 (414)
T PF02897_consen  278 GVEYYVDHHGD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVY  354 (414)
T ss_dssp             S-EEEEEEETT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEccCC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence            44333322222 4444332   2456777787776531 1113333433  3555554  4455777776666  58889


Q ss_pred             ECC
Q 010769          478 DTL  480 (502)
Q Consensus       478 d~~  480 (502)
                      ++.
T Consensus       355 ~~~  357 (414)
T PF02897_consen  355 DLD  357 (414)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.011  Score=57.92  Aligned_cols=141  Identities=17%  Similarity=0.180  Sum_probs=97.2

Q ss_pred             EEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCC------cEEEEEECCCcEEEEeCCCCCCccceE-----
Q 010769          281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP------QILLSGSFDRSVVMKDARISTHSGFKW-----  349 (502)
Q Consensus       281 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~------~~l~s~~~dg~i~vwd~~~~~~~~~~~-----  349 (502)
                      +|.++..-..|+-.|++.|+.+.....|.. |+-+.+.|+..      ..-+.|-.+..|.-||.|-...-...+     
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            444555666788889999999999987766 77778877641      123456778899999999655421111     


Q ss_pred             -eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769          350 -AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       350 -~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                       .......|.+-..  ..++++|+.+|-|++||- .+        .+....+++...+|..+..+.+| .+|++.+ +..
T Consensus       427 y~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdr-i~--------~~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~ty  493 (644)
T KOG2395|consen  427 YSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDR-IG--------RRAKTALPGLGDAIKHVDVTADG-KWILATC-KTY  493 (644)
T ss_pred             cccccccceeeecC--CceEEEeecCCcEEeehh-hh--------hhhhhcccccCCceeeEEeeccC-cEEEEec-ccE
Confidence             1233455555544  347999999999999997 33        24556677888999999999998 4444333 456


Q ss_pred             EEEEECC
Q 010769          429 VKLWDLS  435 (502)
Q Consensus       429 i~vwd~~  435 (502)
                      +.+.++.
T Consensus       494 LlLi~t~  500 (644)
T KOG2395|consen  494 LLLIDTL  500 (644)
T ss_pred             EEEEEEe
Confidence            6666653

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.0018  Score=64.44  Aligned_cols=96  Identities=16%  Similarity=0.277  Sum_probs=76.9

Q ss_pred             ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCee-EEEEcCCCCCEEEEEeCCCcE
Q 010769          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC-TISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ....+..+.|+|.-+ +++.++.+|.|.++.+. .         +.++++..|...++ +++|.|+| ++||.|-.||+|
T Consensus        19 l~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~---------qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I   86 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMD-LIATRTEKGELLIHRLN-W---------QRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTI   86 (665)
T ss_pred             cccceEEEEEcCccc-hhheeccCCcEEEEEec-c---------ceeEeccCCCCccceeeeecCCC-CEEEEEecCCeE
Confidence            455688899999755 89999999999999887 3         78899998888888 99999998 999999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcC
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSE  459 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp  459 (502)
                      ++.|+.++....-. .......|.++.|++
T Consensus        87 ~L~Dve~~~~l~~~-~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   87 RLHDVEKGGRLVSF-LFSVETDISKGIWDR  115 (665)
T ss_pred             EEEEccCCCceecc-ccccccchheeeccc
Confidence            99999988732221 122345677777764

>PHA02713 hypothetical protein; Provisional

Probab=97.20  E-value=0.022  Score=59.15  Aligned_cols=186  Identities=5%  Similarity=0.034  Sum_probs=93.2

Q ss_pred             CcEEEEEecC------CcEEEEECCCCeee--EEeccCCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEeCCCCCCc
Q 010769          279 RNILASASAD------KQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHS  345 (502)
Q Consensus       279 ~~~l~sgs~D------g~v~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~  345 (502)
                      +.+++.|+.+      ..+..||+.+....  ..+.........+.+  ++ .+.+.||.++     .+..||..+..=.
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DD-TIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CC-EEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            4577777753      34778888776432  112111112222222  34 7778888764     3778887754211


Q ss_pred             c--ceEeecCCeEEEEeCCCCCCEEEEEeCCC-----------------------eEEEEECCCCCCCCCCCCCCccEEE
Q 010769          346 G--FKWAVAADVESLAWDPHAEHSFVVSLEDG-----------------------TIKGFDIRTAKSDPDSTSQQSSFTL  400 (502)
Q Consensus       346 ~--~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~  400 (502)
                      .  ...........+..   ++.+.++|+.++                       .+..||..+..       ...+..+
T Consensus       381 ~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-------W~~v~~m  450 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-------WETLPNF  450 (557)
T ss_pred             ECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-------EeecCCC
Confidence            0  00000111122222   244666666542                       46777776542       1111111


Q ss_pred             ecCCCCeeEEEEcCCCCCEEEEEeCC------CcEEEEECCC-CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC-
Q 010769          401 HAHDKAVCTISYNPLVPNLLATGSTD------KMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-  472 (502)
Q Consensus       401 ~~h~~~v~~l~~sp~~~~~l~t~s~d------g~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg-  472 (502)
                      .........+.+.  + .+.+.|+.+      ..+..||..+ .+...+............+.+  ++. +.++||.+| 
T Consensus       451 ~~~r~~~~~~~~~--~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~  524 (557)
T PHA02713        451 WTGTIRPGVVSHK--D-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT-IMMLHCYESY  524 (557)
T ss_pred             CcccccCcEEEEC--C-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE-EEEEeeecce
Confidence            1111111122222  3 666777654      2467899998 665554444433333333333  444 899999888 


Q ss_pred             -cEEEEECCCCc
Q 010769          473 -KLEIWDTLSDA  483 (502)
Q Consensus       473 -~i~vwd~~~~~  483 (502)
                       .+..||+.+++
T Consensus       525 ~~~e~yd~~~~~  536 (557)
T PHA02713        525 MLQDTFNVYTYE  536 (557)
T ss_pred             eehhhcCccccc
Confidence             77888887654

>smart00320 WD40 WD40 repeats

Probab=97.06  E-value=0.0015  Score=39.60  Aligned_cols=38  Identities=34%  Similarity=0.575  Sum_probs=33.2

Q ss_pred             CccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       395 ~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .+...+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            4556677889999999999987 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.04  E-value=0.25  Score=45.26  Aligned_cols=171  Identities=18%  Similarity=0.214  Sum_probs=108.3

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  342 (502)
                      +-...|.+|.|+|+ .+.|++......-.||=...|+.++++.- .-...-.+.|...+ ++.++--.++.+.++.+...
T Consensus        83 g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          83 GETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCC
Confidence            44455999999999 55666666667777776678898888742 12334567777776 77777777888888877654


Q ss_pred             CCccc----eE-----ee-cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC-CCCCCccEEEecCCCCeeEEE
Q 010769          343 THSGF----KW-----AV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-STSQQSSFTLHAHDKAVCTIS  411 (502)
Q Consensus       343 ~~~~~----~~-----~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~  411 (502)
                      .....    ..     .+ +.....++|.|... .|++.-+-.-+.||.+........ .....+.....-.-..|+++.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            32110    11     11 45688999999866 566666777777777664421000 000000000011124578899


Q ss_pred             EcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          412 YNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       412 ~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      |++..+.+|+-+..++.+.-.|....
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC
Confidence            99877678888888888888887654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.01  E-value=0.049  Score=42.30  Aligned_cols=103  Identities=24%  Similarity=0.266  Sum_probs=68.5

Q ss_pred             eEEEEe---CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769          355 VESLAW---DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       355 v~~v~~---~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      |+++++   ..++.+.|++|+.|..|++|+-.           ..+..+. -...|++++-...  ..++.+..+|+|-+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----------e~~~Ei~-e~~~v~~L~~~~~--~~F~Y~l~NGTVGv   67 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----------EIVAEIT-ETDKVTSLCSLGG--GRFAYALANGTVGV   67 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----------cEEEEEe-cccceEEEEEcCC--CEEEEEecCCEEEE
Confidence            445554   44566889999999999999865           3455555 3456777776653  67999999999999


Q ss_pred             EECCCCCeeEEEEecCCCCCEEEEEEc---CCCCcEEEEEeCCCcEEE
Q 010769          432 WDLSNNQPSCIASRNPKAGAVFSVAFS---EDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~s---pd~~~llasg~~dg~i~v  476 (502)
                      |+-...    +...... ..++++.+.   .+|..-|++|-++|.|-+
T Consensus        68 Y~~~~R----lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   68 YDRSQR----LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EeCcce----eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            986433    2333322 235555543   344435888888888753

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.98  E-value=0.11  Score=53.25  Aligned_cols=193  Identities=16%  Similarity=0.225  Sum_probs=109.3

Q ss_pred             EEEEEecCCcEEEEECCCCeeeEEeccCCC------CeE--EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769          281 ILASASADKQVKIWDVAAGKCNLTLEHHTD------KVQ--AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       281 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~------~v~--~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      .++.++.++.|.-.|..+|+.+.++.....      .+.  .+... ++ ..++.++.++.|+.+|.++++..-. ....
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~-~~V~v~~~~g~v~AlD~~TG~~~W~-~~~~  139 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DP-RKVFFGTFDGRLVALDAETGKQVWK-FGNN  139 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cC-CeEEEecCCCeEEEEECCCCCEeee-ecCC
Confidence            677788889999999999988877653322      010  11111 21 4677788899999999998775421 1111


Q ss_pred             CCe---EEEEeCC--CCCCEEEEEe---------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCC-------------
Q 010769          353 ADV---ESLAWDP--HAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-------------  405 (502)
Q Consensus       353 ~~v---~~v~~~p--~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~-------------  405 (502)
                      ..+   ..+.-+|  .+. ++++++         .+|.|..+|..++         +.++.......             
T Consensus       140 ~~~~~~~~i~ssP~v~~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG---------~~~W~~~~~~~~~~~~~~~~~~~~  209 (488)
T cd00216         140 DQVPPGYTMTGAPTIVKK-LVIIGSSGAEFFACGVRGALRAYDVETG---------KLLWRFYTTEPDPNAFPTWGPDRQ  209 (488)
T ss_pred             CCcCcceEecCCCEEECC-EEEEeccccccccCCCCcEEEEEECCCC---------ceeeEeeccCCCcCCCCCCCCCcc
Confidence            110   0011111  012 455554         3678999999887         44454433111             


Q ss_pred             -------Ce-eEEEEcCCCCCEEEEEeCCC------------------cEEEEECCCCCeeEEEEecCCCC----CEEEE
Q 010769          406 -------AV-CTISYNPLVPNLLATGSTDK------------------MVKLWDLSNNQPSCIASRNPKAG----AVFSV  455 (502)
Q Consensus       406 -------~v-~~l~~sp~~~~~l~t~s~dg------------------~i~vwd~~~~~~~~~~~~~~~~~----~v~~~  455 (502)
                             .+ .+.++.+.+ .+++.++.++                  .|.-+|+.+++..-......+..    .....
T Consensus       210 ~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p  288 (488)
T cd00216         210 MWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQP  288 (488)
T ss_pred             eecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCC
Confidence                   01 123444444 5677776554                  68889999988432222222211    00000


Q ss_pred             EEc----CCC--CcEEEEEeCCCcEEEEECCCCccccc
Q 010769          456 AFS----EDS--PFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       456 ~~s----pd~--~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      .+.    -++  ..++++++.+|.+...|..+++.+-+
T Consensus       289 ~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         289 SLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             eEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence            111    122  12477788899999999999998754

The alignment model contains an 8-bladed beta-propeller.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.96  E-value=0.4  Score=46.26  Aligned_cols=197  Identities=12%  Similarity=0.078  Sum_probs=100.3

Q ss_pred             eEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEc--CCCCcEEEEEEC------------------
Q 010769          271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN--HHSPQILLSGSF------------------  330 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~~~~l~s~~~------------------  330 (502)
                      ...++|+.+ .|+-......|+-.|+.+.+....+......+-...|.  .++ ..+ +|..                  
T Consensus        85 g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~-t~~-~g~e~~~~d~~~l~~~~~f~e~  161 (386)
T PF14583_consen   85 GGFLSPDDR-ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDC-TKL-VGIEISREDWKPLTKWKGFREF  161 (386)
T ss_dssp             T-EE-TTSS-EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTS-SEE-EEEEEEGGG-----SHHHHHHH
T ss_pred             ceEEecCCC-eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCc-cEE-EEEEEeehhccCccccHHHHHH
Confidence            456677744 55444455689999999987655555556666556664  333 333 3321                  


Q ss_pred             -----CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC---CCe-EEEEECCCCCCCCCCCCCCccEEEe
Q 010769          331 -----DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE---DGT-IKGFDIRTAKSDPDSTSQQSSFTLH  401 (502)
Q Consensus       331 -----dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~-i~i~d~~~~~~~~~~~~~~~~~~~~  401 (502)
                           ...|...|+.+++.. ..+.....+..+.|+|..+.+++-|-+   +.. -++|-+++..        ...+.+.
T Consensus       162 ~~a~p~~~i~~idl~tG~~~-~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--------~~~~~v~  232 (386)
T PF14583_consen  162 YEARPHCRIFTIDLKTGERK-VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--------SNVKKVH  232 (386)
T ss_dssp             HHC---EEEEEEETTT--EE-EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------EESS
T ss_pred             HhhCCCceEEEEECCCCcee-EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC--------Ccceeee
Confidence                 123555566665543 345566778899999998877776643   221 3677776552        3333333


Q ss_pred             cCC--CCeeEEEEcCCCCCEEEEEe----CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC---
Q 010769          402 AHD--KAVCTISYNPLVPNLLATGS----TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG---  472 (502)
Q Consensus       402 ~h~--~~v~~l~~sp~~~~~l~t~s----~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg---  472 (502)
                      .|.  ..+..=-|.|+|..+...+.    .+..|.-+|+.+.+...+....    ....+.-++||. |++-=|.|.   
T Consensus       233 ~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~-L~vGDG~d~p~~  307 (386)
T PF14583_consen  233 RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGK-LFVGDGGDAPVD  307 (386)
T ss_dssp             ---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSS-EEEEEE------
T ss_pred             cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCC-EEEecCCCCCcc
Confidence            332  23444568999866555433    2445777888887654433332    355667789998 454433332   


Q ss_pred             -------------cEEEEECCCCcc
Q 010769          473 -------------KLEIWDTLSDAG  484 (502)
Q Consensus       473 -------------~i~vwd~~~~~~  484 (502)
                                   .|+++++..+..
T Consensus       308 v~~~~~~~~~~~p~i~~~~~~~~~~  332 (386)
T PF14583_consen  308 VADAGGYKIENDPWIYLFDVEAGRF  332 (386)
T ss_dssp             -------------EEEEEETTTTEE
T ss_pred             ccccccceecCCcEEEEeccccCce
Confidence                         466777776553

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.91  E-value=0.00022  Score=68.61  Aligned_cols=210  Identities=18%  Similarity=0.222  Sum_probs=140.8

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      |-.......|-+.+.+ ++.++.+..|..|| +.++....+. .++....++|..+++..++.+-..+.+.+||+.+...
T Consensus        33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt  109 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT  109 (615)
T ss_pred             hccccceeeEecCCCc-eehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence            3344556678888665 77788888999999 4455444443 4567778999998877888888899999999987654


Q ss_pred             ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe
Q 010769          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ...-.+....-.-+.|++..+ .++.+...|.+.+++.++.         +.......|...++++++.+.+  +.+.++
T Consensus       110 qqLE~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgts---------R~iiv~Gkh~RRgtq~av~lEd--~vil~d  177 (615)
T KOG2247|consen  110 QQLESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTS---------RRIIVMGKHQRRGTQIAVTLED--YVILCD  177 (615)
T ss_pred             HHHhccCcchHHHHhhccCCc-cccccccccceEEEeccch---------hhhhhhcccccceeEEEecccc--eeeecC
Confidence            433333333333378888655 7888889999999999876         3344444488899999999854  444444


Q ss_pred             CCCc----------EEEEECCCC----------------------------------------CeeEEEEecCCCCCEEE
Q 010769          425 TDKM----------VKLWDLSNN----------------------------------------QPSCIASRNPKAGAVFS  454 (502)
Q Consensus       425 ~dg~----------i~vwd~~~~----------------------------------------~~~~~~~~~~~~~~v~~  454 (502)
                      .|..          +.++.....                                        .+..+ .+....+-+.|
T Consensus       178 cd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~fq~~~gni~c  256 (615)
T KOG2247|consen  178 CDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QFQEKYGNIHC  256 (615)
T ss_pred             cHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-EeeecCCceeE
Confidence            4432          333322210                                        11112 33334567889


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          455 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       455 ~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      ..|--||+  |..+-.-|.|.+-.+.+++.....|...
T Consensus       257 yrwylDg~--i~igf~ag~iV~iS~h~aeLgaeffqkl  292 (615)
T KOG2247|consen  257 YRWYLDGY--ILIGFDAGYIVSISAHNAELGAEFFQKL  292 (615)
T ss_pred             EEEecccc--ccccccceeEEEEeccchHHHHHHHHHh
Confidence            99999987  4556677788888888888877766543

>PHA02713 hypothetical protein; Provisional

Probab=96.90  E-value=0.07  Score=55.47  Aligned_cols=147  Identities=11%  Similarity=0.109  Sum_probs=75.2

Q ss_pred             CcEEEEEecCC-----cEEEEECCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECCC-------------------
Q 010769          279 RNILASASADK-----QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDR-------------------  332 (502)
Q Consensus       279 ~~~l~sgs~Dg-----~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-------------------  332 (502)
                      +.+.+.|+.++     ++..||..+.+-..  .+.........+..  ++ .+.+.|+.++                   
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CC-EEEEEeCCCcccccccccccccccccccc
Confidence            45777777654     48889988764322  22211111222222  34 7777787653                   


Q ss_pred             ----cEEEEeCCCCCCc--cceEeecCCeEEEEeCCCCCCEEEEEeCC------CeEEEEECCC-CCCCCCCCCCCccEE
Q 010769          333 ----SVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRT-AKSDPDSTSQQSSFT  399 (502)
Q Consensus       333 ----~i~vwd~~~~~~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~  399 (502)
                          .+..||..+.+=.  ............+.+.   +.+.++|+.+      ..+..||..+ ..       ...+..
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~---~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~~  498 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHK---DDIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELITT  498 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEEC---CEEEEEeCCCCCCccceeEEEecCCCCCC-------eeEccc
Confidence                3667777654311  1010111111122222   3466666643      2467888876 31       222333


Q ss_pred             EecCCCCeeEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCeeE
Q 010769          400 LHAHDKAVCTISYNPLVPNLLATGSTDK--MVKLWDLSNNQPSC  441 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg--~i~vwd~~~~~~~~  441 (502)
                      +.........+.+.   +.+.++|+.++  .+..||..+.+...
T Consensus       499 m~~~r~~~~~~~~~---~~iyv~Gg~~~~~~~e~yd~~~~~W~~  539 (557)
T PHA02713        499 TESRLSALHTILHD---NTIMMLHCYESYMLQDTFNVYTYEWNH  539 (557)
T ss_pred             cCcccccceeEEEC---CEEEEEeeecceeehhhcCcccccccc
Confidence            33222333333332   38888999888  77888888877543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.89  E-value=0.14  Score=49.87  Aligned_cols=185  Identities=14%  Similarity=0.084  Sum_probs=83.9

Q ss_pred             CCCCcEEEEEec------CCcEEEEECCCCeeeEEeccC---CCCeEEEEEcCCCCcEEEEEEC----------------
Q 010769          276 KEFRNILASASA------DKQVKIWDVAAGKCNLTLEHH---TDKVQAVAWNHHSPQILLSGSF----------------  330 (502)
Q Consensus       276 ~~~~~~l~sgs~------Dg~v~vwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~----------------  330 (502)
                      |+ +.+++|+-.      -|-+.+.|-++..........   ...-..+-|.|.. +.++|+..                
T Consensus       139 p~-G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~  216 (461)
T PF05694_consen  139 PD-GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLE  216 (461)
T ss_dssp             SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHH
T ss_pred             CC-ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhh
Confidence            45 447776522      246888887777766665432   2344567788877 77777753                


Q ss_pred             ----CCcEEEEeCCCCCCccceEeec---CCeEEEEe--CCCCCCEEEEEeCCCeEEEEEC-CCCCCCCCCCCCCccEEE
Q 010769          331 ----DRSVVMKDARISTHSGFKWAVA---ADVESLAW--DPHAEHSFVVSLEDGTIKGFDI-RTAKSDPDSTSQQSSFTL  400 (502)
Q Consensus       331 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~v~~--~p~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~  400 (502)
                          ..++.+||+.+.+..+. ....   ..+..|.|  .|....-|+.+.-.++|..|-- ..+.  ..   .+.+..+
T Consensus       217 ~~~yG~~l~vWD~~~r~~~Q~-idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--W~---a~kVi~i  290 (461)
T PF05694_consen  217 AGKYGHSLHVWDWSTRKLLQT-IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--WA---AEKVIDI  290 (461)
T ss_dssp             HH-S--EEEEEETTTTEEEEE-EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--EE---EEEEEEE
T ss_pred             cccccCeEEEEECCCCcEeeE-EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--ee---eeEEEEC
Confidence                35899999998876653 3222   22445655  4544444555445555555433 2221  00   0111111


Q ss_pred             e-----------------cCCCCeeEEEEcCCCCCEEEE-EeCCCcEEEEECCCC-CeeEEEEec--C------------
Q 010769          401 H-----------------AHDKAVCTISYNPLVPNLLAT-GSTDKMVKLWDLSNN-QPSCIASRN--P------------  447 (502)
Q Consensus       401 ~-----------------~h~~~v~~l~~sp~~~~~l~t-~s~dg~i~vwd~~~~-~~~~~~~~~--~------------  447 (502)
                      .                 +-..-|+.|.+|.+. ++|.. +=..|.|+.||+... .|.++-+..  +            
T Consensus       291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g  369 (461)
T PF05694_consen  291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKG  369 (461)
T ss_dssp             --EE--SS---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS--
T ss_pred             CCcccCcccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccc
Confidence            1                 113558999999998 55555 456899999999874 333333321  1            


Q ss_pred             --CCCCEEEEEEcCCCCcEEEEEe
Q 010769          448 --KAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       448 --~~~~v~~~~~spd~~~llasg~  469 (502)
                        -.+...-++.|-||+.+.+|.|
T Consensus       370 ~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  370 KRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ----S----EEE-TTSSEEEEE--
T ss_pred             cccCCCCCeEEEccCCeEEEEEee
Confidence              1123466888899987666654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.82  E-value=0.015  Score=61.92  Aligned_cols=99  Identities=17%  Similarity=0.144  Sum_probs=70.5

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCee-eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  343 (502)
                      ...-+.++.|+|.-....+.+..|+.|+|..+..... +.++. ....++|++|+|.| ..++.|-..|++.-|-..-..
T Consensus       154 k~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~lei  231 (1405)
T KOG3630|consen  154 KPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEI  231 (1405)
T ss_pred             cccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeecccce
Confidence            3455778999998777788889999999987764332 33333 46778999999999 899999999999888754331


Q ss_pred             Ccc---ceEeecCCeEEEEeCCCCC
Q 010769          344 HSG---FKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       344 ~~~---~~~~~~~~v~~v~~~p~~~  365 (502)
                      ...   .-......|.+|+|-....
T Consensus       232 k~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  232 KSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             eecccCCCcCCCcceeEEEEeccee
Confidence            111   0111256799999986443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.015  Score=61.88  Aligned_cols=147  Identities=15%  Similarity=0.128  Sum_probs=92.6

Q ss_pred             CeEEEEEcCCCCcEEEE--EECCCcEEEEeCCCCCCcc-----------ceEeecCCeEEEEeCCCCCCEEEEEeCCCeE
Q 010769          311 KVQAVAWNHHSPQILLS--GSFDRSVVMKDARISTHSG-----------FKWAVAADVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s--~~~dg~i~vwd~~~~~~~~-----------~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i  377 (502)
                      ++..+..++++ .+.++  .+.+-.|.+||++.-....           ..........++.|+|.=+..++++..|+.|
T Consensus       102 pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            44555555665 33332  3334478899988543221           0111233467889999767678888899999


Q ss_pred             EEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC-CCCCEEEEE
Q 010769          378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVA  456 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~  456 (502)
                      ++.-+...        ...+..+ ......++++|+|.| ..++.|-..|++.-|-..-.....+..... ....|.+++
T Consensus       181 ~V~~~~~~--------~~~v~s~-p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~  250 (1405)
T KOG3630|consen  181 RVKSTKQL--------AQNVTSF-PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT  250 (1405)
T ss_pred             hhhhhhhh--------hhhhccc-CcccceeeEEecccc-ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence            98877654        1222222 245678999999998 899999999999988654332111111111 147899999


Q ss_pred             EcCCCCcEEEEE
Q 010769          457 FSEDSPFVLAIG  468 (502)
Q Consensus       457 ~spd~~~llasg  468 (502)
                      |-....|+++-+
T Consensus       251 Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  251 WLSTQEFLVVYG  262 (1405)
T ss_pred             EecceeEEEEec
Confidence            998887654443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.78  E-value=0.45  Score=44.57  Aligned_cols=150  Identities=15%  Similarity=0.154  Sum_probs=90.0

Q ss_pred             CcEEEEEecCCcEEEEECCC-CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc----------
Q 010769          279 RNILASASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----------  347 (502)
Q Consensus       279 ~~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----------  347 (502)
                      ++.|+.|..+| |.++++.. ........  ...|..+...+.- +.|++-+ |+.++++++..-.....          
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            45788998888 99999833 33333332  3349999999877 4444443 59999999875443321          


Q ss_pred             ----eEeecCCeEEEE-eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCC-CccEEEecCCCCeeEEEEcCCCCCEEE
Q 010769          348 ----KWAVAADVESLA-WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ-QSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       348 ----~~~~~~~v~~v~-~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                          .......+...+ -........++......|.+|........     . .....+ .-...+.+++|.+   ..|+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~-----f~~~~ke~-~lp~~~~~i~~~~---~~i~  152 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS-----FSKLLKEI-SLPDPPSSIAFLG---NKIC  152 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccc-----ccceeEEE-EcCCCcEEEEEeC---CEEE
Confidence                111223344444 11222234444445558888888764110     1 223333 3457789999994   6677


Q ss_pred             EEeCCCcEEEEECCCCCeeEEE
Q 010769          422 TGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      .|..++ ..+.|+.++.+..+.
T Consensus       153 v~~~~~-f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  153 VGTSKG-FYLIDLNTGSPSELL  173 (275)
T ss_pred             EEeCCc-eEEEecCCCCceEEe
Confidence            777554 889999977654444

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.78  E-value=0.32  Score=47.42  Aligned_cols=117  Identities=12%  Similarity=0.125  Sum_probs=61.9

Q ss_pred             ceeeEEecCCCCcEEEEEec--------------------CCcEEEEECCCCeeeEEeccCC--CCeEEEEEc--CCCCc
Q 010769          268 SVLGLAWNKEFRNILASASA--------------------DKQVKIWDVAAGKCNLTLEHHT--DKVQAVAWN--HHSPQ  323 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~--------------------Dg~v~vwd~~~~~~~~~~~~h~--~~v~~l~~~--~~~~~  323 (502)
                      --..+-|+|. .++++|...                    -.++.+||+.+.+.++++..-.  ..+..|.|.  |....
T Consensus       182 ~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~  260 (461)
T PF05694_consen  182 FGYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANY  260 (461)
T ss_dssp             ----EEEETT-TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--E
T ss_pred             CCCCeEEcCC-CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccc
Confidence            3456667776 567776543                    3689999999999999986433  235567765  44434


Q ss_pred             EEEEEECCCcEEEEeC-CCCCCcc---------------------ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 010769          324 ILLSGSFDRSVVMKDA-RISTHSG---------------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD  381 (502)
Q Consensus       324 ~l~s~~~dg~i~vwd~-~~~~~~~---------------------~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d  381 (502)
                      -|+.+...++|..|-- ..+.-..                     .+.....-++.+..|.+...+.+++-..|.|+.||
T Consensus       261 gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYD  340 (461)
T PF05694_consen  261 GFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYD  340 (461)
T ss_dssp             EEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE
T ss_pred             eEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEe
Confidence            4555555566655543 2211000                     00111344788999999887677777899999999


Q ss_pred             CCCC
Q 010769          382 IRTA  385 (502)
Q Consensus       382 ~~~~  385 (502)
                      +...
T Consensus       341 ISDP  344 (461)
T PF05694_consen  341 ISDP  344 (461)
T ss_dssp             -SST
T ss_pred             cCCC
Confidence            9876

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.64  E-value=0.15  Score=50.97  Aligned_cols=156  Identities=14%  Similarity=0.189  Sum_probs=96.2

Q ss_pred             cccceeeEEecCCCCcEEEEEe--cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCC---CcEEEEEECCCcEEEEeC
Q 010769          265 HTDSVLGLAWNKEFRNILASAS--ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS---PQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs--~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~vwd~  339 (502)
                      --.+|..++|.-. ...+++.-  ..|.+++=|   .+.+..|    ..|..+.|.|-+   ...|++.-....|.+|-+
T Consensus        18 AiHPvhGlaWTDG-kqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   18 AIHPVHGLAWTDG-KQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             hhccccceEecCC-CEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            3467899999744 55666543  334443322   2334333    468999999864   135677778899999998


Q ss_pred             CCCCCccceE--e----ecC----CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeE
Q 010769          340 RISTHSGFKW--A----VAA----DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  409 (502)
Q Consensus       340 ~~~~~~~~~~--~----~~~----~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~  409 (502)
                      .........+  .    ...    -...+.|+|... ++++-+....-.+++++..        ...+..-....+.|.|
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d--------~srVkaDi~~~G~IhC  160 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCD--------SSRVKADIKTSGLIHC  160 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeC--------CceEEEeccCCceEEE
Confidence            6322111111  1    111    124568999766 5555554444456777765        2344443456788999


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          410 ISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       410 l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      .+|.++|.+++++.+..=.-++||-...
T Consensus       161 ACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  161 ACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            9999999777777776666789986543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.61  E-value=1.1  Score=46.32  Aligned_cols=25  Identities=12%  Similarity=0.226  Sum_probs=21.1

Q ss_pred             EEEEEeCCCcEEEEECCCCcccccc
Q 010769          464 VLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       464 llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +++.++.+|.++.+|..+++.+-+.
T Consensus       474 lvf~g~~~G~l~a~D~~TGe~lw~~  498 (527)
T TIGR03075       474 LVFYGTLEGYFKAFDAKTGEELWKF  498 (527)
T ss_pred             EEEEECCCCeEEEEECCCCCEeEEE
Confidence            5667888999999999999988544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.55  E-value=0.011  Score=62.58  Aligned_cols=102  Identities=17%  Similarity=0.270  Sum_probs=73.2

Q ss_pred             EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      .+++|++.|.|..+|++..        ..+...-..-.++|++++|+.+| .+++.|-.+|.|.+||+..+++.......
T Consensus       101 ~ivi~Ts~ghvl~~d~~~n--------L~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGN--------LGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcc--------cchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeec
Confidence            6888999999999998864        13333333346899999999998 99999999999999999998765554443


Q ss_pred             CC-CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          447 PK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       447 ~~-~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      ++ ...|..+.+..++. .+.++...|.  +|.+.
T Consensus       172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence            33 22344455555555 5777777776  66653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.48  E-value=0.69  Score=43.91  Aligned_cols=199  Identities=11%  Similarity=0.077  Sum_probs=110.8

Q ss_pred             EEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe-
Q 010769          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-  350 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-  350 (502)
                      -.|.+....++.+--..+.|.-|+..+++. ..+. +...+.++.....+ ..|+++..  .+.+++............ 
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAG-GRLIACEH--GVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCC-CeEEEEcc--ccEEEeccCCceeEEeccc
Confidence            357777555677777788899999876643 2232 23334444443333 34554432  355566544433111111 


Q ss_pred             ----ecCCeEEEEeCCCCCCEEEEEeCC------------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769          351 ----VAADVESLAWDPHAEHSFVVSLED------------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       351 ----~~~~v~~v~~~p~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                          .....+.+...|+|.  ++.++..            |.|+.++.. +         .....+..+-..-++|+|||
T Consensus       105 ~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g---------~~~~l~~~~~~~~NGla~Sp  172 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPD-G---------GVVRLLDDDLTIPNGLAFSP  172 (307)
T ss_pred             cCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCC-C---------CEEEeecCcEEecCceEECC
Confidence                123456677788765  4444333            234333321 1         23333344445568899999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCC--C---CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC-cEEEEECCCCcccccc
Q 010769          415 LVPNLLATGSTDKMVKLWDLSN--N---QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-KLEIWDTLSDAGISNR  488 (502)
Q Consensus       415 ~~~~~l~t~s~dg~i~vwd~~~--~---~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg-~i~vwd~~~~~~~~~~  488 (502)
                      ++..++++=+..+.|.-|++..  .   ............+..-.++...+|.+ .+++...| .|.+|+.. ++.+..+
T Consensus       173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l-w~~a~~~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL-WVAAVWGGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE-EEecccCCceEEEECCC-CcEEEEE
Confidence            9955555656668888887752  1   11122233334566667888888874 43444444 89999988 7766554


Q ss_pred             c
Q 010769          489 F  489 (502)
Q Consensus       489 ~  489 (502)
                      .
T Consensus       251 ~  251 (307)
T COG3386         251 K  251 (307)
T ss_pred             E
Confidence            3

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.47  E-value=0.36  Score=50.24  Aligned_cols=147  Identities=18%  Similarity=0.132  Sum_probs=75.3

Q ss_pred             CcEEEEEecCCc-----EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC------cEEEEeCCCCCCcc-
Q 010769          279 RNILASASADKQ-----VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMKDARISTHSG-  346 (502)
Q Consensus       279 ~~~l~sgs~Dg~-----v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg------~i~vwd~~~~~~~~-  346 (502)
                      +.+.|+|+.||.     |-.||..+.+....-. ......+.....-++.+.++|+.++      ++..||..+..-.. 
T Consensus       381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~  459 (571)
T KOG4441|consen  381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI  459 (571)
T ss_pred             CEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence            568888988864     6778877654322111 1112222222222237888888665      45677776543211 


Q ss_pred             -ceEeecCCeEEEEeCCCCCCEEEEEeCCCe-----EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769          347 -FKWAVAADVESLAWDPHAEHSFVVSLEDGT-----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       347 -~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                       .............+   +..++++|+.++.     |..||..+..       ...+..+......+....+   +..+.
T Consensus       460 ~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~-------W~~v~~m~~~rs~~g~~~~---~~~ly  526 (571)
T KOG4441|consen  460 APMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQ-------WTMVAPMTSPRSAVGVVVL---GGKLY  526 (571)
T ss_pred             CCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCc-------eeEcccCccccccccEEEE---CCEEE
Confidence             11111111222222   2457788887763     7778887652       1222222222233333333   24778


Q ss_pred             EEEeCCCc-----EEEEECCCCCe
Q 010769          421 ATGSTDKM-----VKLWDLSNNQP  439 (502)
Q Consensus       421 ~t~s~dg~-----i~vwd~~~~~~  439 (502)
                      ++|+.||.     |..||..+.+.
T Consensus       527 ~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  527 AVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             EEecccCccccceeEEcCCCCCce
Confidence            88887764     66677666653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.46  E-value=1.1  Score=44.46  Aligned_cols=152  Identities=14%  Similarity=0.175  Sum_probs=83.9

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec---CCCCcEEEE
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN---KEFRNILAS  284 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~~~~l~s  284 (502)
                      +...|++|+..|.++||+...........++.                       ..-..+|..|..-   +......++
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-----------------------~~l~~PILqv~~G~F~s~~~~~~La   92 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-----------------------TQLKDPILQVECGKFVSGSEDLQLA   92 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEE-----------------------EecCCcEEEEEeccccCCCCcceEE
Confidence            57799999999999999984322111111111                       1234567777643   221222333


Q ss_pred             EecCCcEEEEECCC--Ce-------eeEEeccCC--CCeEEEEEcCC----CCcEEEEEECCCcEEEEeCCCCCCccceE
Q 010769          285 ASADKQVKIWDVAA--GK-------CNLTLEHHT--DKVQAVAWNHH----SPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       285 gs~Dg~v~vwd~~~--~~-------~~~~~~~h~--~~v~~l~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  349 (502)
                      .-.-..+.||.+..  |.       .+..+..|.  .....+++-|-    +..++.+-+.||.+.+|+-+...... ..
T Consensus        93 VLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~-~l  171 (418)
T PF14727_consen   93 VLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR-FL  171 (418)
T ss_pred             EecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE-Ec
Confidence            35556777777621  11       112222222  22333443332    23688889999999999976533211 11


Q ss_pred             eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCC
Q 010769          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT  384 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~  384 (502)
                      ...--...+++.+... .|++++.+..|..|....
T Consensus       172 p~~llPgPl~Y~~~tD-sfvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  172 PDFLLPGPLCYCPRTD-SFVTASSSWTLECYKYQD  205 (418)
T ss_pred             CCCCCCcCeEEeecCC-EEEEecCceeEEEecHHH
Confidence            1111223456666544 788888888999887643

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.43  E-value=0.31  Score=50.75  Aligned_cols=191  Identities=11%  Similarity=0.174  Sum_probs=98.1

Q ss_pred             cceeeEEecCCCCcEEEEEe-----cCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC--------
Q 010769          267 DSVLGLAWNKEFRNILASAS-----ADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--------  331 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs-----~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--------  331 (502)
                      ..+...+++|++....++..     .|.  .|.+++.. +.. ..+.. ....+.-.|+|+| ..+.+....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG-~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDA-DAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCC-CceEEEecCcceEEEec
Confidence            46788899999665544442     244  45555542 222 22321 2237788999997 444444322        


Q ss_pred             ----CcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-cCCCC
Q 010769          332 ----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKA  406 (502)
Q Consensus       332 ----g~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~  406 (502)
                          +.+.+.++..+....   ...+.|..+.|+|+|..++++.  +|.|++--+....... .. ......+. .-...
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~-l~~~~~l~~~l~~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YA-LTNPREVGPGLGDT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-ee-ecccEEeecccCCc
Confidence                233333443332221   3456799999999998655554  4777763322211000 00 01112222 23334


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCcEEEE--ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcE
Q 010769          407 VCTISYNPLVPNLLATGSTDKMVKLW--DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL  474 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i  474 (502)
                      +.++.|.+++ .+ +++..++...+|  ++...... .........++.+++-++. . ++ ....+|.+
T Consensus       499 ~~~l~W~~~~-~L-~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~-~-iy-v~~~~g~~  562 (591)
T PRK13616        499 AVSLDWRTGD-SL-VVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS-T-VY-VTDARAVL  562 (591)
T ss_pred             cccceEecCC-EE-EEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc-e-EE-EEcCCceE
Confidence            6889999987 44 455554444444  44433211 1122223567888888874 3 34 44566633

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.40  E-value=0.97  Score=48.16  Aligned_cols=80  Identities=19%  Similarity=0.197  Sum_probs=53.5

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCC----------Cee---eEEe--------ccCCCCeEEEEEcCCC--
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA----------GKC---NLTL--------EHHTDKVQAVAWNHHS--  321 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~----------~~~---~~~~--------~~h~~~v~~l~~~~~~--  321 (502)
                      -.-.|..|.+||+| .+||..|..| |.|-.+..          |+.   .+++        ..+...|..+.|||.+  
T Consensus        83 ~~f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   83 PLFEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             CceeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            34579999999995 4666666655 44433321          111   1111        1345689999999985  


Q ss_pred             CcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          322 PQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       322 ~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      ...|++-..|+++++||+.....+.
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~~p~  185 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQHPW  185 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCCCCe
Confidence            3788889999999999997655443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.29  E-value=0.37  Score=50.18  Aligned_cols=174  Identities=11%  Similarity=0.056  Sum_probs=90.1

Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-----CCC--cEEEEeCCCCCCccceEeecCCeEEEEe
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----FDR--SVVMKDARISTHSGFKWAVAADVESLAW  360 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-----~dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~  360 (502)
                      +|.+.-.+-..-.++.-..+....+.+.+.+|+|....++..     .+.  .|.+++..  .... ........++-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~-~lt~g~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAV-QVLEGHSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--Ccce-eeecCCCCCCceE
Confidence            666655442222233222233346788999999954444442     233  45555542  2222 1222234788899


Q ss_pred             CCCCCCEEEEEeC-----------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          361 DPHAEHSFVVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       361 ~p~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      +|++..+.++...           .+.+.+.++..+         ....   ...+.|..+.|||+| ..|+... ++.|
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g---------e~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v  470 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS---------AVAS---RVPGPISELQLSRDG-VRAAMII-GGKV  470 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCc---------hhhh---ccCCCcCeEEECCCC-CEEEEEE-CCEE
Confidence            9987643333221           123333333322         1111   335679999999999 5444443 4677


Q ss_pred             EE---EECCCCCeeE--EEEecC-CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          430 KL---WDLSNNQPSC--IASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       430 ~v---wd~~~~~~~~--~~~~~~-~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      ++   -....+...+  ...+.. -...+.++.|.+++. |+ ++..++...+|.+.
T Consensus       471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             EEEEEEeCCCCceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEe
Confidence            77   4433443211  111222 223468899999998 34 44555555566654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.27  E-value=0.22  Score=49.99  Aligned_cols=159  Identities=13%  Similarity=0.253  Sum_probs=95.5

Q ss_pred             CCeEEEEEcCCCCcEEEEEE--CCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC----CCCEEEEEeCCCeEEEEECC
Q 010769          310 DKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFDIR  383 (502)
Q Consensus       310 ~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~----~~~~l~~~~~dg~i~i~d~~  383 (502)
                      -++..++|.. |.+.+++.-  .+|.+++=|.+       ..+.-..|..++|.|-    .+ .+++.-....|.+|-+.
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds~-------viGqFEhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDSK-------VIGQFEHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCCcc-------EeeccceeeeeeecCcccCCCC-ceEEEeccceEEEEEec
Confidence            4788899964 436666653  34444332221       2344456889999985    33 45555667889999987


Q ss_pred             CCCCCCCCCCCCccEEEecC---CC--CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc
Q 010769          384 TAKSDPDSTSQQSSFTLHAH---DK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~h---~~--~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      ......    .+.+.....+   .-  --.++.|+|.. ..|+.-.....-.+++++.........+ ...|.|.|.+|.
T Consensus        91 ~s~~e~----~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT  164 (671)
T PF15390_consen   91 PSTTER----NKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWT  164 (671)
T ss_pred             cCcccc----ccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEec
Confidence            432111    1222221111   11  12457799976 6666555444445667765543333334 456889999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          459 EDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       459 pd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +||+.|+++.|+.=.-+|||-....
T Consensus       165 ~DG~RLVVAvGSsLHSyiWd~~qKt  189 (671)
T PF15390_consen  165 KDGQRLVVAVGSSLHSYIWDSAQKT  189 (671)
T ss_pred             CcCCEEEEEeCCeEEEEEecCchhh
Confidence            9999777777776678899975543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.27  E-value=0.019  Score=37.17  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       449 ~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      ...|.+++|+|... +||.|..+|.|.+|.+ +++.+
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcCc
Confidence            45699999999998 7999999999999999 55543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.26  E-value=0.24  Score=45.42  Aligned_cols=205  Identities=11%  Similarity=0.107  Sum_probs=112.9

Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCee--eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce-E
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-W  349 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~  349 (502)
                      +|-+.+......++..  .-+|...-...  .+.+.+-...+.++.|+|+. +.|++......-.|+=...++.+... .
T Consensus        49 a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL  125 (316)
T COG3204          49 AWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPL  125 (316)
T ss_pred             EEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecc
Confidence            3433323344444444  44554432211  11234455669999999999 66666666666666655555544321 1


Q ss_pred             eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCC-CCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS-QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      ..-+....+.|...+ .++++--.++.+.++.+........... .-++......+...-+++|.|.. ..|..+-.-.-
T Consensus       126 ~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P  203 (316)
T COG3204         126 TGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNP  203 (316)
T ss_pred             cccCChhHeEEecCC-EEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCC
Confidence            223456677777643 2455555677888887765422111100 01111111125677899999987 66666666666


Q ss_pred             EEEEECCCCC-eeEEEEecCC-------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          429 VKLWDLSNNQ-PSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       429 i~vwd~~~~~-~~~~~~~~~~-------~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      +.||.+.... ...+.....+       ...|.++.|.+....+|+-+..++.+.-.|....
T Consensus       204 ~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         204 IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             cEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            7777665432 1111111111       2347788898876668888888888877776544

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.25  E-value=2.1  Score=45.78  Aligned_cols=175  Identities=9%  Similarity=0.056  Sum_probs=110.5

Q ss_pred             cEEEEECCCCeeeEEeccC----CCCeEEEEEcCCCCcEEEEEEC----------CCcEEEEeCCCCCCccce--EeecC
Q 010769          290 QVKIWDVAAGKCNLTLEHH----TDKVQAVAWNHHSPQILLSGSF----------DRSVVMKDARISTHSGFK--WAVAA  353 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~--~~~~~  353 (502)
                      .++++|-++-+.++..+..    ...|.++.|..+...++++|..          .|.|.+|.+...+.....  ....+
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            4777777766554433211    1245566688875577777753          578888887763322212  23345


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .+.++.--  +. .++ ++-+..|++|+..+.         +.++.-..|..++..+...-.+ ..++.|..-+++.+.-
T Consensus       831 av~aL~~f--ng-kll-A~In~~vrLye~t~~---------~eLr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~  896 (1096)
T KOG1897|consen  831 AVYALVEF--NG-KLL-AGINQSVRLYEWTTE---------RELRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQ  896 (1096)
T ss_pred             ceeehhhh--CC-eEE-EecCcEEEEEEcccc---------ceehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEEE
Confidence            55555432  23 233 345678999999876         4566666788888888888877 8899998888877765


Q ss_pred             CCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          434 LSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       434 ~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      .+..+- ........+...++++.+-.+..|  +.+...|.+.+-...
T Consensus       897 y~~~eg~f~evArD~~p~Wmtaveil~~d~y--lgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  897 YKGDEGNFEEVARDYNPNWMTAVEILDDDTY--LGAENSGNLFTVRKD  942 (1096)
T ss_pred             EeccCCceEEeehhhCccceeeEEEecCceE--EeecccccEEEEEec
Confidence            554431 123344566778888888877764  444566777665543

>PHA03098 kelch-like protein; Provisional

Probab=96.21  E-value=0.16  Score=52.90  Aligned_cols=186  Identities=15%  Similarity=0.150  Sum_probs=87.5

Q ss_pred             cEEEEEecCC------cEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEeCCCCCCcc
Q 010769          280 NILASASADK------QVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHSG  346 (502)
Q Consensus       280 ~~l~sgs~Dg------~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~  346 (502)
                      .+++.|+.++      .+..||+.+.+....  +.........+.+  ++ .+++.||.++     .+..||..+.+-..
T Consensus       296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NN-RIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CC-EEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            4666666542      577888877654321  1111112222222  34 7788888653     46677776543111


Q ss_pred             ce-EeecCCeEEEEeCCCCCCEEEEEeCC------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCE
Q 010769          347 FK-WAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       347 ~~-~~~~~~v~~v~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                      .. ......-.+++..  ++.+++.|+..      ..+..||..+..-       ..+..+....... ++... ++ .+
T Consensus       373 ~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-------~~~~~~p~~r~~~-~~~~~-~~-~i  440 (534)
T PHA03098        373 EPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW-------SKGSPLPISHYGG-CAIYH-DG-KI  440 (534)
T ss_pred             CCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee-------eecCCCCccccCc-eEEEE-CC-EE
Confidence            00 0011111112221  23466666632      3578888876421       1111111111111 22222 23 66


Q ss_pred             EEEEeCC--------CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010769          420 LATGSTD--------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA  483 (502)
Q Consensus       420 l~t~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d-----g~i~vwd~~~~~  483 (502)
                      ++.|+..        ..+.+||..+.+...+............+.+  ++. +++.||.+     ..+.+||+.++.
T Consensus       441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCCCE
Confidence            6666643        2388899988765433222211111122222  454 67778764     468889887653

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.19  E-value=0.4  Score=47.27  Aligned_cols=52  Identities=12%  Similarity=0.113  Sum_probs=38.9

Q ss_pred             cceeeEEecCC----------CCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcC
Q 010769          267 DSVLGLAWNKE----------FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH  319 (502)
Q Consensus       267 ~~V~~l~~~~~----------~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~  319 (502)
                      ..|+++.|-|-          +...++.|..+|.|++|.. +|..+..-..|..+|..+....
T Consensus        57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            45666665432          1468999999999999984 6777666667899999998854

>PRK10115 protease 2; Provisional

Probab=96.14  E-value=2.3  Score=45.58  Aligned_cols=199  Identities=7%  Similarity=0.014  Sum_probs=97.6

Q ss_pred             cceeeEEecCCCCcEEEEEecCC----cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC-----CcEEEE
Q 010769          267 DSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMK  337 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg----~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vw  337 (502)
                      -.+..+.|+|+++.++++...+|    .|++.|+.++..+...-... . ..++|.+++..++++...+     ..|..+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            45778899999664555544444    58899998886432221111 1 5699999985555555432     357777


Q ss_pred             eCCCCCC--ccceEeecCCeEEEEeCC-CCCCEEEEEe--CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe-eEEE
Q 010769          338 DARISTH--SGFKWAVAADVESLAWDP-HAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV-CTIS  411 (502)
Q Consensus       338 d~~~~~~--~~~~~~~~~~v~~v~~~p-~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~  411 (502)
                      ++.++..  ............-..+.+ ++..+++.+.  .++.+.+++.....       ..+ ..+..+...+ ..+.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~-------~~~-~~~~~~~~~~~~~~~  276 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD-------AEP-FVFLPRRKDHEYSLD  276 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCC-------CCc-eEEEECCCCCEEEEE
Confidence            7777632  221222222233223333 5554443332  33568888854321       121 2222222222 2222


Q ss_pred             EcCCCCCEEEEEeC-CC--cEEEEECCC-CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          412 YNPLVPNLLATGST-DK--MVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       412 ~sp~~~~~l~t~s~-dg--~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                       +..+ .+++.... ..  .|...++.. .+...+... .....|..+.+..  .+++++...+|.-+++-+.
T Consensus       277 -~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        277 -HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP-RENIMLEGFTLFT--DWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             -eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECC-CCCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEc
Confidence             2222 33333222 12  343344442 222122211 1123677888873  3578877778765555443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.07  E-value=0.41  Score=42.31  Aligned_cols=154  Identities=18%  Similarity=0.227  Sum_probs=88.3

Q ss_pred             ccccccccccCCCceEEEEEecCCcc-----eeEEEEEecCCCCCCceeeeecccc---CCCcceeeeecCCCCCCCC-C
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVS-----HLEVYILEESDGGDPNLYVHHHIII---PAFPLCMAWLDCPLKDREK-G  209 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~-----~l~v~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~w~~~~~~~s~~-~  209 (502)
                      ....++-..+|+|++. +|...+-..     .-.+|.|..         .||-..+   -.++..++|       +.+ .
T Consensus       108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~---------~h~v~~i~~~v~IsNgl~W-------d~d~K  170 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLA---------GHQVELIWNCVGISNGLAW-------DSDAK  170 (310)
T ss_pred             hcccccCccCCCCcee-eeeeccccccccccccEEEEecc---------CCCceeeehhccCCccccc-------cccCc
Confidence            4567888899999994 444333111     112333322         2221111   234455666       444 5


Q ss_pred             CEEEEecCCCcEEEeeC--CCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          210 NFMAVGSMEPAIEIWDL--DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+-.+-+.+-+|.-||.  .+++...+..++.-          ++.   +..    .|. .--.++.... +++.+++-.
T Consensus       171 ~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dl----------rk~---~~~----e~~-~PDGm~ID~e-G~L~Va~~n  231 (310)
T KOG4499|consen  171 KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDL----------RKS---QPF----ESL-EPDGMTIDTE-GNLYVATFN  231 (310)
T ss_pred             EEEEEccCceEEeeeecCCCcccccCcceeEEe----------ccC---CCc----CCC-CCCcceEccC-CcEEEEEec
Confidence            56667777788877884  45444443333210          111   100    111 1112233344 667888888


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEE
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG  328 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  328 (502)
                      .++|...|+.+|+.+..++..+..|+|++|--.+-.+|++.
T Consensus       232 g~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  232 GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             CcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            89999999999999999988899999999975532344433

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.96  E-value=0.023  Score=36.82  Aligned_cols=35  Identities=14%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCee
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC  301 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~  301 (502)
                      ....|.+++|+|. ..+||.|+.+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcC
Confidence            3456999999999 669999999999999998 4543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.91  E-value=1.8  Score=41.87  Aligned_cols=79  Identities=18%  Similarity=0.139  Sum_probs=45.1

Q ss_pred             CccEEEecCCCCeeEEEEcCCC------CCEEEEEeCCCcEEEEECCCCCe-eEEEEe-cCCCCCEEEEEEcCCCCcEEE
Q 010769          395 QSSFTLHAHDKAVCTISYNPLV------PNLLATGSTDKMVKLWDLSNNQP-SCIASR-NPKAGAVFSVAFSEDSPFVLA  466 (502)
Q Consensus       395 ~~~~~~~~h~~~v~~l~~sp~~------~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~-~~~~~~v~~~~~spd~~~lla  466 (502)
                      .++..+..| ..++.+.|....      ..+|++.-..+.|....+..... .....+ ......+..+++.|||. |++
T Consensus       244 ~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-Lyv  321 (331)
T PF07995_consen  244 PPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-LYV  321 (331)
T ss_dssp             --SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-EEE
T ss_pred             ccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-EEE
Confidence            355555555 556777776421      14666665567788887764432 222222 33444899999999998 677


Q ss_pred             EEeCCCcEE
Q 010769          467 IGGSKGKLE  475 (502)
Q Consensus       467 sg~~dg~i~  475 (502)
                      +...+|.|+
T Consensus       322 ~~d~~G~iy  330 (331)
T PF07995_consen  322 SDDSDGKIY  330 (331)
T ss_dssp             EE-TTTTEE
T ss_pred             EECCCCeEe
Confidence            666788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.84  E-value=2.7  Score=43.43  Aligned_cols=56  Identities=9%  Similarity=0.074  Sum_probs=38.3

Q ss_pred             cEEEEECCCCeeeEEeccCCC---------CeEEEEEcCCCC--cEEEEEECCCcEEEEeCCCCCCc
Q 010769          290 QVKIWDVAAGKCNLTLEHHTD---------KVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h~~---------~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~  345 (502)
                      +|.-.|+++|+....++....         ...-+....++.  ..++.+..+|.+.+.|.++++.+
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            677788999998877754221         112223334552  47889999999999999987753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA03098 kelch-like protein; Provisional

Probab=95.75  E-value=0.45  Score=49.51  Aligned_cols=158  Identities=11%  Similarity=0.071  Sum_probs=73.7

Q ss_pred             CcEEEEEecC-----CcEEEEECCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECC------CcEEEEeCCCCCCc
Q 010769          279 RNILASASAD-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHS  345 (502)
Q Consensus       279 ~~~l~sgs~D-----g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~  345 (502)
                      +.+++.|+.+     ..+..||..+++-..  .+....... +++. -++ .+++.|+..      ..+..||..+.+-.
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            4577777765     357788887664322  121111111 1222 233 677777742      35778887754211


Q ss_pred             cc--eEeecCCeEEEEeCCCCCCEEEEEeCC--------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          346 GF--KWAVAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       346 ~~--~~~~~~~v~~v~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      ..  .........++..   ++.+++.|+.+        ..+.+||..+..-       ..+..+.........+.+  +
T Consensus       420 ~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-------~~~~~~~~~r~~~~~~~~--~  487 (534)
T PHA03098        420 KGSPLPISHYGGCAIYH---DGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-------TELSSLNFPRINASLCIF--N  487 (534)
T ss_pred             ecCCCCccccCceEEEE---CCEEEEECCccCCCCCcccceEEEecCCCCce-------eeCCCCCcccccceEEEE--C
Confidence            10  0000011112222   23466666543        2378888876521       111111111111122222  3


Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCCE
Q 010769          416 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       416 ~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      + .+++.|+.+     +.|.+||..+.+...+.......+.|
T Consensus       488 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~  528 (534)
T PHA03098        488 N-KIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSL  528 (534)
T ss_pred             C-EEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccce
Confidence            3 677777654     46888998887654444444333433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.70  E-value=3.1  Score=44.41  Aligned_cols=36  Identities=11%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             CcccceeeEEecCCC--CcEEEEEecCCcEEEEECCCC
Q 010769          264 SHTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~--~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .+...|..+.|+|.+  +..|+.-..|+++|+||+...
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            456789999999984  457778888999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=95.60  E-value=0.0047  Score=59.07  Aligned_cols=18  Identities=6%  Similarity=0.291  Sum_probs=12.1

Q ss_pred             eeccCCCCccCCcccCCCCHH
Q 010769            6 SWVPKGASKAVPEEAEPPSKE   26 (502)
Q Consensus         6 ~~~~~g~~~~~~~~~~~~~~~   26 (502)
                      -||.+-  ..+..|..+ ++-
T Consensus        14 dWi~~~--~~~~~KlTi-~Dt   31 (458)
T PF10446_consen   14 DWIRQD--TDYKRKLTI-NDT   31 (458)
T ss_pred             hhhhcc--ccccccccH-HHH
Confidence            388874  677778777 543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.48  E-value=1.1  Score=40.97  Aligned_cols=142  Identities=10%  Similarity=0.051  Sum_probs=86.1

Q ss_pred             CeEEEEEcCCCCcEEEEEECCCc-EEEEeCCCCCCccceEeecCC--eEEEEeCCCCCCEEEEE-----eCCCeEEEEEC
Q 010769          311 KVQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSGFKWAVAAD--VESLAWDPHAEHSFVVS-----LEDGTIKGFDI  382 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~~~-----~~dg~i~i~d~  382 (502)
                      ....+.++|..+.-++.+-.-|+ ..++|....+.+.......+.  .-.=+|+|+|. +|++.     ..-|.|-+||.
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEec
Confidence            34457788877666666666665 467888776655433322221  12346899887 45443     23478999999


Q ss_pred             CCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-------CC-----------cEEEEECCCCCeeEEEE
Q 010769          383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-------DK-----------MVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-------dg-----------~i~vwd~~~~~~~~~~~  444 (502)
                      +..        ...+-.+..|.-.-..+.+.++| +.|+.+..       -|           ++.+.|..++..+...+
T Consensus       148 r~~--------fqrvgE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~  218 (366)
T COG3490         148 REG--------FQRVGEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT  218 (366)
T ss_pred             ccc--------cceecccccCCcCcceeEEecCC-cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence            976        46777888888888899999999 65555432       11           12223333333222222


Q ss_pred             ec--CCCCCEEEEEEcCCCC
Q 010769          445 RN--PKAGAVFSVAFSEDSP  462 (502)
Q Consensus       445 ~~--~~~~~v~~~~~spd~~  462 (502)
                      +.  .+.-.|..+...+||.
T Consensus       219 Lp~~l~~lSiRHld~g~dgt  238 (366)
T COG3490         219 LPASLRQLSIRHLDIGRDGT  238 (366)
T ss_pred             CchhhhhcceeeeeeCCCCc
Confidence            22  3345678888888887

>PHA02790 Kelch-like protein; Provisional

Probab=95.47  E-value=0.47  Score=48.47  Aligned_cols=183  Identities=10%  Similarity=0.046  Sum_probs=86.5

Q ss_pred             CcEEEEEecCC-----cEEEEECCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECC--CcEEEEeCCCCCCcc--c
Q 010769          279 RNILASASADK-----QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKDARISTHSG--F  347 (502)
Q Consensus       279 ~~~l~sgs~Dg-----~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~--~  347 (502)
                      ..+++.|+.++     ++..||..+++...  .+.........+.  -++ .+.+.|+.+  ..+..||..+.+-..  .
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANN-KLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECC-EEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            34667777543     57778887765432  2221111122222  234 777778764  357778765432110  0


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCC---eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ..........+..   ++.+.++|+.++   .+..||.++..=       ..+..+.........+.+.  + .+.+.|+
T Consensus       349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W-------~~~~~m~~~r~~~~~~~~~--~-~IYv~GG  415 (480)
T PHA02790        349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQW-------QFGPSTYYPHYKSCALVFG--R-RLFLVGR  415 (480)
T ss_pred             CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEE-------EeCCCCCCccccceEEEEC--C-EEEEECC
Confidence            0000111122222   234666666543   467788765420       1111111111111222222  2 5556653


Q ss_pred             CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010769          425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA  483 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d-----g~i~vwd~~~~~  483 (502)
                         .+.+||..+++...+.......... +++. -++. ++++||.+     ..+..||..+++
T Consensus       416 ---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~-IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        416 ---NAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNK-LLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ---ceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCE-EEEECCcCCCcccceEEEEECCCCe
Confidence               5788999887754443332222222 2222 2444 78888864     357788876653

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.36  E-value=0.78  Score=45.28  Aligned_cols=142  Identities=18%  Similarity=0.123  Sum_probs=90.3

Q ss_pred             CcE-EEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCC------CcEEEEEECCCcEEEEeCCCCCCccceEee
Q 010769          279 RNI-LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS------PQILLSGSFDRSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       279 ~~~-l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  351 (502)
                      +++ +..|..-..+.-.|+..|+.+.....|..-  -+.|.|..      +..-++|-.+..|.-.|.|...........
T Consensus       479 ssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         479 SSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             cceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            444 445666677888899999999988877654  56777753      122345666666776777754422211222


Q ss_pred             c-----CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCC
Q 010769          352 A-----ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       352 ~-----~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      .     ....|..-..  ..++++++..|-|++||--..         +....+++....|..+..+.+|..+||||  .
T Consensus       557 KdY~tKn~Fss~~tTe--sGyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta~Gk~ilaTC--k  623 (776)
T COG5167         557 KDYKTKNKFSSGMTTE--SGYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTANGKHILATC--K  623 (776)
T ss_pred             hhcccccccccccccc--CceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeecCCcEEEEee--c
Confidence            2     2223332222  338999999999999996543         34445666778899999999985555555  3


Q ss_pred             CcEEEEECC
Q 010769          427 KMVKLWDLS  435 (502)
Q Consensus       427 g~i~vwd~~  435 (502)
                      ..+.+-|++
T Consensus       624 ~yllL~d~~  632 (776)
T COG5167         624 NYLLLTDVP  632 (776)
T ss_pred             ceEEEEecc
Confidence            457777764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.20  E-value=5.6  Score=42.92  Aligned_cols=196  Identities=15%  Similarity=0.198  Sum_probs=108.5

Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEeccCCCC--------eEEEEEcCC---------------CCcEEEEEECCCcEEE
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDK--------VQAVAWNHH---------------SPQILLSGSFDRSVVM  336 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~--------v~~l~~~~~---------------~~~~l~s~~~dg~i~v  336 (502)
                      ..|+.++.++.|.-.|..+|+.+.++......        ...+.+...               ....++.++.|+.|.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            36778888899999999999988877532211        122333211               1146788889999999


Q ss_pred             EeCCCCCCccceEeecCCeE-------------EEEeCCC-CCCEEEEEeC----------CCeEEEEECCCCCCCCCCC
Q 010769          337 KDARISTHSGFKWAVAADVE-------------SLAWDPH-AEHSFVVSLE----------DGTIKGFDIRTAKSDPDST  392 (502)
Q Consensus       337 wd~~~~~~~~~~~~~~~~v~-------------~v~~~p~-~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~  392 (502)
                      .|.++++..-. +...+.+.             .+.-.|- ....+++|+.          +|.|+-+|.++++      
T Consensus       275 LDA~TGk~~W~-fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk------  347 (764)
T TIGR03074       275 LDADTGKLCED-FGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA------  347 (764)
T ss_pred             EECCCCCEEEE-ecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc------
Confidence            99988876531 12111110             0111110 0125666643          6889999999984      


Q ss_pred             CCCccEEEecC----------------C-CCe-eEEEEcCCCCCEEEEEe------------------CCCcEEEEECCC
Q 010769          393 SQQSSFTLHAH----------------D-KAV-CTISYNPLVPNLLATGS------------------TDKMVKLWDLSN  436 (502)
Q Consensus       393 ~~~~~~~~~~h----------------~-~~v-~~l~~sp~~~~~l~t~s------------------~dg~i~vwd~~~  436 (502)
                         .++.+..-                . ..+ ..+++.+.. .+++.+.                  ..++|.-.|..+
T Consensus       348 ---l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~T  423 (764)
T TIGR03074       348 ---LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATT  423 (764)
T ss_pred             ---EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEEEEeCCC
Confidence               33333210                0 111 223444433 2333221                  134466677777


Q ss_pred             CCeeEEEEecCCC--------CCEEEEEEcC-CCC--cEEEEEeCCCcEEEEECCCCccccc
Q 010769          437 NQPSCIASRNPKA--------GAVFSVAFSE-DSP--FVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       437 ~~~~~~~~~~~~~--------~~v~~~~~sp-d~~--~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ++..-.+....|.        .++ -+.+.. +|.  -+++.++.+|.+.+.|-.+++.+..
T Consensus       424 Gk~~W~~Q~~~hD~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       424 GKERWVFQTVHHDLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             CceEEEecccCCccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            7743333332231        111 112222 441  2588899999999999999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.16  E-value=2.6  Score=38.90  Aligned_cols=161  Identities=11%  Similarity=0.046  Sum_probs=89.1

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe-CCCCCCcc
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-ARISTHSG  346 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~  346 (502)
                      .+.+.++++++..+.+....++.-.||-...+.....+. ....+..-.|.+++ .+.+....+...+++. ...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCccee
Confidence            688999999965444444233333444333333333321 22377788999997 6666666666666663 33333222


Q ss_pred             ceE--eec-CCeEEEEeCCCCCCEEEEEe--CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEE
Q 010769          347 FKW--AVA-ADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       347 ~~~--~~~-~~v~~v~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                      ...  ... ..|..+.++|+|..+.++..  ..+.|.+--+.............+..........+..+.|.+++ .+++
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V  181 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVV  181 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEE
Confidence            111  111 28999999999987666652  35677776654332110000012222223345688999999987 5555


Q ss_pred             EEeC-CCcEEE
Q 010769          422 TGST-DKMVKL  431 (502)
Q Consensus       422 t~s~-dg~i~v  431 (502)
                      .+.. ++.+..
T Consensus       182 ~~~~~~~~~~~  192 (253)
T PF10647_consen  182 LGRSAGGPVVR  192 (253)
T ss_pred             EeCCCCCceeE
Confidence            5444 443433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK10115 protease 2; Provisional

Probab=95.09  E-value=5.9  Score=42.51  Aligned_cols=249  Identities=12%  Similarity=0.098  Sum_probs=118.4

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC--
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME--  218 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d--  218 (502)
                      .+..+.++|++++|+.+...+..-...|++.+...+   ...   ...++.....+.|       +++++.|+....+  
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg---~~l---~~~i~~~~~~~~w-------~~D~~~~~y~~~~~~  194 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG---NWY---PELLDNVEPSFVW-------ANDSWTFYYVRKHPV  194 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC---CCC---CccccCcceEEEE-------eeCCCEEEEEEecCC
Confidence            467789999999999987665555667777776543   110   0111222234666       6777777666543  


Q ss_pred             ----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccccee-eEEecCCCCcEEEEEec--CCcE
Q 010769          219 ----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL-GLAWNKEFRNILASASA--DKQV  291 (502)
Q Consensus       219 ----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~~l~sgs~--Dg~v  291 (502)
                          ..|..+++.+......                       .  .+........ .+..+.++..+++.++.  ++.+
T Consensus       195 ~~~~~~v~~h~lgt~~~~d~-----------------------l--v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~  249 (686)
T PRK10115        195 TLLPYQVWRHTIGTPASQDE-----------------------L--VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEV  249 (686)
T ss_pred             CCCCCEEEEEECCCChhHCe-----------------------E--EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccE
Confidence                2455566654311110                       0  1111111122 22333354434433322  3568


Q ss_pred             EEEECC--CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC---CcEEEEeCCCCCCccceEee--cCCeEEEEeCCCC
Q 010769          292 KIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHSGFKWAV--AADVESLAWDPHA  364 (502)
Q Consensus       292 ~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~--~~~v~~v~~~p~~  364 (502)
                      .+|+..  .+.....+..-......+. +..+ .+++....+   ..|...++...........+  ...+..+.+..  
T Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--  325 (686)
T PRK10115        250 LLLDAELADAEPFVFLPRRKDHEYSLD-HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT--  325 (686)
T ss_pred             EEEECcCCCCCceEEEECCCCCEEEEE-eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC--
Confidence            888843  3332222221122222222 3333 444433322   23444444422222223333  23577777773  


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-cCCCCeeEEEEc--CCCCCEEEEEeC---CCcEEEEECCCCC
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYN--PLVPNLLATGST---DKMVKLWDLSNNQ  438 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s--p~~~~~l~t~s~---dg~i~vwd~~~~~  438 (502)
                      ..++++...+|.-+++-+...        ...+..+. .....+..+.++  +++..++++.+.   -+.+..+|+.+++
T Consensus       326 ~~l~~~~~~~g~~~l~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        326 DWLVVEERQRGLTSLRQINRK--------TREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CEEEEEEEeCCEEEEEEEcCC--------CCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            457777777887666554422        11222222 222223333344  333345555443   4668888888765


Q ss_pred             e
Q 010769          439 P  439 (502)
Q Consensus       439 ~  439 (502)
                      .
T Consensus       398 ~  398 (686)
T PRK10115        398 R  398 (686)
T ss_pred             E
Confidence            3

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.01  E-value=1.5  Score=45.48  Aligned_cols=176  Identities=13%  Similarity=0.202  Sum_probs=86.2

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEE--e--ccCCCCeEEEEEcCCCCcEEEEEECCCcEEE-EeCCCC
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT--L--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-KDARIS  342 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~--~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v-wd~~~~  342 (502)
                      .+..+.|+.+  ..|++...+|++.||++-.. .+..  .  ......|..+.+...|   +++-..+|.+.+ .+....
T Consensus        85 ~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i~~~~~~  158 (829)
T KOG2280|consen   85 ELIGMGWSDD--EELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNG---VAVLTVSGQVILINGVEEP  158 (829)
T ss_pred             CeeeecccCC--ceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCc---eEEEecCCcEEEEcCCCcc
Confidence            7889999988  36888899999999997532 2222  1  1223345555555566   333334455444 333322


Q ss_pred             CCccceEeecCCeEEEEeC---CCC-CCEEEEEe-CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769          343 THSGFKWAVAADVESLAWD---PHA-EHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       343 ~~~~~~~~~~~~v~~v~~~---p~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      ..............+-+|.   |+. ...++--. ..| ..++-....        ......+....+.+..+..||+. 
T Consensus       159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~--------~~q~~~~~~~~~~~~ki~VS~n~-  228 (829)
T KOG2280|consen  159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES--------RVQLHALSWPNSSVVKISVSPNR-  228 (829)
T ss_pred             hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc--------cccccccCCCCceEEEEEEcCCc-
Confidence            2111000011111112232   211 11111110 111 111212211        11222222234567888999987 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          418 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ++|+--...|.|.+-++...+..+-+....|.- --.++|+.+
T Consensus       229 ~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgn  270 (829)
T KOG2280|consen  229 RFLALYTETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGN  270 (829)
T ss_pred             ceEEEEecCCcEEEEecchhhhhhccCCCCCCc-hHhceeecC
Confidence            899999999999998887766433333333322 224555444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.92  E-value=3  Score=38.28  Aligned_cols=207  Identities=14%  Similarity=0.122  Sum_probs=107.0

Q ss_pred             eeeEEecCCCCcEEEEEecCCc-EEEEECCCCeeeEEeccCCCC--eEEEEEcCCCCcEEEEEEC-----CCcEEEEeCC
Q 010769          269 VLGLAWNKEFRNILASASADKQ-VKIWDVAAGKCNLTLEHHTDK--VQAVAWNHHSPQILLSGSF-----DRSVVMKDAR  340 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~Dg~-v~vwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~~~-----dg~i~vwd~~  340 (502)
                      ...+.|+|..+.-++.+-.-|+ ..++|.+..+...++...++.  --.-.|||+| .+|.+.-.     -|.|-|||.+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEecc
Confidence            3456777776656666666665 567888877665554321111  1123589999 66666543     3789999998


Q ss_pred             CCC-CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEE--------------------ECCCCCCCCCCCCCCccEE
Q 010769          341 IST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF--------------------DIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       341 ~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~--------------------d~~~~~~~~~~~~~~~~~~  399 (502)
                      ..- .+.....+.-....+.|.++|.. +++.  +|-|...                    |..++..       ....+
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrt-lvva--nGGIethpdfgR~~lNldsMePSlvlld~atG~l-------iekh~  218 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRT-LVVA--NGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL-------IEKHT  218 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcE-EEEe--CCceecccccCccccchhhcCccEEEEeccccch-------hhhcc
Confidence            432 22223345556678889998874 4433  2334333                    2222210       00011


Q ss_pred             Ee--cCCCCeeEEEEcCCCCCEEEEEeCCCc-----EEEEECCCCCeeEEEEec-----CCCCCEEEEEEcCCCCcEEEE
Q 010769          400 LH--AHDKAVCTISYNPLVPNLLATGSTDKM-----VKLWDLSNNQPSCIASRN-----PKAGAVFSVAFSEDSPFVLAI  467 (502)
Q Consensus       400 ~~--~h~~~v~~l~~sp~~~~~l~t~s~dg~-----i~vwd~~~~~~~~~~~~~-----~~~~~v~~~~~spd~~~llas  467 (502)
                      +.  .+.-.|..++..++| ..++.+-..|.     -.|=-...+++.......     ....-|-+++.+.+...+.+|
T Consensus       219 Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lT  297 (366)
T COG3490         219 LPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALT  297 (366)
T ss_pred             CchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEe
Confidence            11  233456666666665 44333322221     000001111111111100     011246677887766655555


Q ss_pred             EeCCCcEEEEECCCCccccc
Q 010769          468 GGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       468 g~~dg~i~vwd~~~~~~~~~  487 (502)
                      +=..+...+||..++..+..
T Consensus       298 SP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         298 SPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             cCCCCeEEEEEcCCCcEEec
Confidence            55556788999999987654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.85  E-value=0.048  Score=56.85  Aligned_cols=169  Identities=14%  Similarity=0.179  Sum_probs=97.8

Q ss_pred             ccccccccccCCCc-eEEEEEecCCcceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          139 SEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       139 ~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .+.|-+++|-.... .++     .+++.+-||..+.-.+. .+.|.+|-..+....|--+.|.++    -++.-++..+-
T Consensus       132 ~G~v~dl~fah~~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~----~~~~~~ic~~~  202 (1283)
T KOG1916|consen  132 PGGVGDLQFAHTKCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPI----AVNKVYICYGL  202 (1283)
T ss_pred             CCCcccccccccCChHHH-----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccc----ccccceeeecc
Confidence            34566666643321 111     23345678877764442 346667777777788877888776    34568899999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEe-----------cCCCCcEEEEE
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-----------NKEFRNILASA  285 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----------~~~~~~~l~sg  285 (502)
                      .+|.|++.+.+..                            ....+.+|...+..++|           +|+ +..|+.+
T Consensus       203 ~~~~i~lL~~~ra----------------------------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpD-Gtv~a~a  253 (1283)
T KOG1916|consen  203 KGGEIRLLNINRA----------------------------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPD-GTVFAWA  253 (1283)
T ss_pred             CCCceeEeeechH----------------------------HHHHHHhcCCCcccHHHHhhchhhheeeCCC-CcEEEEe
Confidence            9999999887631                            11223346666655554           666 5577777


Q ss_pred             ecCCcEEEEECC-----CCeeeEEeccCC-CCeEEEEEcCCC------C--cEEEEE-ECCCcEEEEeCCCCCCc
Q 010769          286 SADKQVKIWDVA-----AGKCNLTLEHHT-DKVQAVAWNHHS------P--QILLSG-SFDRSVVMKDARISTHS  345 (502)
Q Consensus       286 s~Dg~v~vwd~~-----~~~~~~~~~~h~-~~v~~l~~~~~~------~--~~l~s~-~~dg~i~vwd~~~~~~~  345 (502)
                      +.||.++.|.+.     ..+|++..+.|. .+-.|.-++.+.      +  .+++++ ..+..+++|.....++.
T Consensus       254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            888877777653     224455556666 333333243221      0  123333 33556777776554443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.76  E-value=3.4  Score=38.15  Aligned_cols=156  Identities=13%  Similarity=0.107  Sum_probs=84.4

Q ss_pred             CeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEE-CCCCCCCC
Q 010769          311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDP  389 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d-~~~~~~~~  389 (502)
                      .+.+.++++++..+.+....++.-.+|-.+......... ....+..-.|++++. +.++...+...+++. ...+.   
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~---   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT---   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCC-EEEEEcCCCceEEEEecCCCc---
Confidence            688999999994444444233334444444333322111 334778889999854 555555566666653 22221   


Q ss_pred             CCCCCCccEEEecC--CCCeeEEEEcCCCCCEEEEEe--CCCcEEEEECCC---CCeeE----EEEecCCCCCEEEEEEc
Q 010769          390 DSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSN---NQPSC----IASRNPKAGAVFSVAFS  458 (502)
Q Consensus       390 ~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s--~dg~i~vwd~~~---~~~~~----~~~~~~~~~~v~~~~~s  458 (502)
                           .........  ...|+.+.+||+|.++.+...  .++.|.+--+..   +.+..    ..........+..+.|.
T Consensus       100 -----~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen  100 -----GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             -----ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence                 111112211  128999999999955444442  346666654432   21111    11122334678999999


Q ss_pred             CCCCcEEEEEeCCCcEEE
Q 010769          459 EDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       459 pd~~~llasg~~dg~i~v  476 (502)
                      +++..++++...++.+..
T Consensus       175 ~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  175 DDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             CCCEEEEEeCCCCCceeE
Confidence            999854444444443444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.71  E-value=3.4  Score=37.90  Aligned_cols=184  Identities=11%  Similarity=0.101  Sum_probs=105.9

Q ss_pred             cceeeEEecCCCCcEEEEEecCC--cEEEEECCCCeeeEEeccC-CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769          267 DSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg--~v~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  343 (502)
                      .-..+|.|..+ +.++-|.+.-|  .|+.+|+.+++......-. .----.++...+  .+..-.-.++...+||..+.+
T Consensus        45 aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   45 AFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             -EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTE
T ss_pred             ccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccce
Confidence            34567888655 45777777766  7999999999877655321 122233333322  455556678899999998766


Q ss_pred             CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec--CC---CCeeEEEEcCCCCC
Q 010769          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HD---KAVCTISYNPLVPN  418 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~sp~~~~  418 (502)
                      ... .+...+.-..++..  +. .++.+..+..|+++|..+.         .....+..  ..   ..++-+.|.. | .
T Consensus       122 ~~~-~~~y~~EGWGLt~d--g~-~Li~SDGS~~L~~~dP~~f---------~~~~~i~V~~~g~pv~~LNELE~i~-G-~  186 (264)
T PF05096_consen  122 KIG-TFPYPGEGWGLTSD--GK-RLIMSDGSSRLYFLDPETF---------KEVRTIQVTDNGRPVSNLNELEYIN-G-K  186 (264)
T ss_dssp             EEE-EEE-SSS--EEEEC--SS-CEEEE-SSSEEEEE-TTT----------SEEEEEE-EETTEE---EEEEEEET-T-E
T ss_pred             EEE-EEecCCcceEEEcC--CC-EEEEECCccceEEECCccc---------ceEEEEEEEECCEECCCcEeEEEEc-C-E
Confidence            554 44555666666633  44 5777777888999998765         33333332  22   2345566652 3 4


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEec-------------CCCCCEEEEEEcCCCCcEEEEE
Q 010769          419 LLATGSTDKMVKLWDLSNNQPSCIASRN-------------PKAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~v~~~~~spd~~~llasg  468 (502)
                      +.|=.=....|...|..+++......+.             +...-.+.|++.|....+++||
T Consensus       187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            4444445566777788887743332221             1134688999999888667765

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.67  E-value=0.003  Score=65.30  Aligned_cols=164  Identities=12%  Similarity=0.112  Sum_probs=83.2

Q ss_pred             eeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEE-----------EcCCCCcEEEEEECCCcEEEE
Q 010769          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVA-----------WNHHSPQILLSGSFDRSVVMK  337 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~-----------~~~~~~~~l~s~~~dg~i~vw  337 (502)
                      |..+-|-++ .-++..+-.+++|++....+... ..|.+|+..++.++           .+|+| ..|++++.||.+++|
T Consensus       186 V~wcp~~~~-~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  186 VSWCPIAVN-KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFY  262 (1283)
T ss_pred             eeecccccc-cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCcccee
Confidence            333333444 45777777888999877664432 33455776665544           47888 899999999999988


Q ss_pred             eCCCCCCcc----ceEe-ec-CCeEEEEeCCC-------CCC-EEEEEe-CCCeEEEEECCCCCCCCCCCCCCccEEEec
Q 010769          338 DARISTHSG----FKWA-VA-ADVESLAWDPH-------AEH-SFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHA  402 (502)
Q Consensus       338 d~~~~~~~~----~~~~-~~-~~v~~v~~~p~-------~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  402 (502)
                      .+.-.....    ..|. |. .+-.|.-++.+       +.. ++++++ .+..+++|......+.... ....+.....
T Consensus       263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~-~~d~v~iV~p  341 (1283)
T KOG1916|consen  263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK-LIDGVQIVGP  341 (1283)
T ss_pred             eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhh-cccceEeecC
Confidence            765332211    1222 22 12222222221       111 233333 3456888877655221000 0011122223


Q ss_pred             CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      |.+.|+-+.....--..+++-+.++.|++|--+.
T Consensus       342 ~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  342 HDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             CCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence            4444443322211112345566788899986544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.49  E-value=0.17  Score=31.78  Aligned_cols=34  Identities=35%  Similarity=0.413  Sum_probs=27.5

Q ss_pred             CCEEEEEEcCCCC--cEEEEEeCCCcEEEEECCCCc
Q 010769          450 GAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       450 ~~v~~~~~spd~~--~llasg~~dg~i~vwd~~~~~  483 (502)
                      |.|.++.|+|...  -+|+.+-..|.|.|+|++++-
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f   36 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF   36 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence            4689999997543  478888888999999998643

It contains a characteristic DLL sequence motif.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.36  E-value=1.2  Score=44.12  Aligned_cols=142  Identities=16%  Similarity=0.203  Sum_probs=89.2

Q ss_pred             EEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC------CEEEEEeCCCeEEEEECCCCCCCCCCCCCCcc
Q 010769          324 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS  397 (502)
Q Consensus       324 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  397 (502)
                      ++..|+....++--|+..++.+. .|.....+ -|.|.|...      ..-++|-++..|.-.|.|...        ..+
T Consensus       482 i~~dg~~~~kLykmDIErGkvve-eW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g--------NKi  551 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVE-EWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG--------NKI  551 (776)
T ss_pred             EEecCCCcccceeeecccceeee-EeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccC--------Cce
Confidence            34445555667777777766554 66666666 677877521      234566677777777777542        111


Q ss_pred             EEEe----cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc
Q 010769          398 FTLH----AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK  473 (502)
Q Consensus       398 ~~~~----~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~  473 (502)
                      ....    ......+|..-..  ..++|++|..|-|++||--..+  ....+++-...|..+..+.+|.++||+|  ...
T Consensus       552 ~v~esKdY~tKn~Fss~~tTe--sGyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta~Gk~ilaTC--k~y  625 (776)
T COG5167         552 KVVESKDYKTKNKFSSGMTTE--SGYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTANGKHILATC--KNY  625 (776)
T ss_pred             eeeeehhcccccccccccccc--CceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeecCCcEEEEee--cce
Confidence            1111    1112223333233  3699999999999999965543  2334555667899999999999988876  347


Q ss_pred             EEEEECCC
Q 010769          474 LEIWDTLS  481 (502)
Q Consensus       474 i~vwd~~~  481 (502)
                      |.+-|+.-
T Consensus       626 llL~d~~i  633 (776)
T COG5167         626 LLLTDVPI  633 (776)
T ss_pred             EEEEeccc
Confidence            88888753

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.27  E-value=5.4  Score=43.45  Aligned_cols=135  Identities=13%  Similarity=0.189  Sum_probs=78.8

Q ss_pred             eecCCeEEEEeC---CC--CCCEEEEEeCCCeEEEEECCCC------CCCCCCCCCCccEEEecC---CCCeeEEEEcCC
Q 010769          350 AVAADVESLAWD---PH--AEHSFVVSLEDGTIKGFDIRTA------KSDPDSTSQQSSFTLHAH---DKAVCTISYNPL  415 (502)
Q Consensus       350 ~~~~~v~~v~~~---p~--~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~  415 (502)
                      ....+|..|+|.   ..  ....++..-....+.|+...-.      ..........++..+..+   ..+...++|+|.
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            356788888887   21  1112444444556777762211      111111112445555432   357788999998


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCC--e-eEEEEecCCCCC----------EEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          416 VPNLLATGSTDKMVKLWDLSNNQ--P-SCIASRNPKAGA----------VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~--~-~~~~~~~~~~~~----------v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      ....||+....|...||++....  . ........+.|.          -..+.|.++...+|+ + ....+.++|+.+.
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~-~r~~l~~~d~~~~  234 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-C-NRSKLMLIDFESN  234 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-E-cCCceEEEECCCC
Confidence            77899999999999999992111  0 011111111122          347889888775554 3 4557999999987


Q ss_pred             cccc
Q 010769          483 AGIS  486 (502)
Q Consensus       483 ~~~~  486 (502)
                      ....
T Consensus       235 ~~~~  238 (765)
T PF10214_consen  235 WQTE  238 (765)
T ss_pred             Cccc
Confidence            7643

These proteins are found in fungi.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.11  E-value=6.8  Score=38.91  Aligned_cols=294  Identities=9%  Similarity=0.101  Sum_probs=142.9

Q ss_pred             CceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCC
Q 010769          151 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVID  230 (502)
Q Consensus       151 ~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~  230 (502)
                      ...|++|+..|   .|+||.-.........+....+  +....++++.-.|-.  ......||+ -.-..+.||.+....
T Consensus        37 ~d~IivGS~~G---~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s--~~~~~~LaV-LhP~kl~vY~v~~~~  108 (418)
T PF14727_consen   37 SDKIIVGSYSG---ILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVS--GSEDLQLAV-LHPRKLSVYSVSLVD  108 (418)
T ss_pred             ccEEEEecccc---EEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccC--CCCcceEEE-ecCCEEEEEEEEecC
Confidence            35888898887   4455544322211123333332  344556776643311  224456666 445788899884322


Q ss_pred             CCCceeeeCCcchhhhhhccccCCccccccccCCcc--cceeeEEecC----CCCcEEEEEecCCcEEEEECCCCeeeEE
Q 010769          231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLGLAWNK----EFRNILASASADKQVKIWDVAAGKCNLT  304 (502)
Q Consensus       231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~~~----~~~~~l~sgs~Dg~v~vwd~~~~~~~~~  304 (502)
                      ....                 ......+ .....|.  .....+.+-|    .++.+|+.-|.||++.+++-+.-...+.
T Consensus       109 g~~~-----------------~g~~~~L-~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~  170 (418)
T PF14727_consen  109 GTVE-----------------HGNQYQL-ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRF  170 (418)
T ss_pred             CCcc-----------------cCcEEEE-EEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEE
Confidence            1100                 0000000 0111121  2222232222    2256889999999999999655433333


Q ss_pred             eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC--------------------CCCccceE--eecCCeE---EEE
Q 010769          305 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--------------------STHSGFKW--AVAADVE---SLA  359 (502)
Q Consensus       305 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~--------------------~~~~~~~~--~~~~~v~---~v~  359 (502)
                      +.. .--.-.+.|.+.. ..|++++.+..+.-|....                    ++.....|  .....+.   .+.
T Consensus       171 lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~  248 (418)
T PF14727_consen  171 LPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVR  248 (418)
T ss_pred             cCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEE
Confidence            332 2233456677776 6788888888888876421                    11111222  2233333   333


Q ss_pred             eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCee--EE--EEcCCCCCEEEEEeCCCcEEEEECC
Q 010769          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC--TI--SYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l--~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      ++.....+++.|  ...+.+.+-...        .+...++........  .+  ...|.....++.++.++++.||.=.
T Consensus       249 ~~~~~~~IvvLg--er~Lf~l~~~G~--------l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~  318 (418)
T PF14727_consen  249 FSSSESDIVVLG--ERSLFCLKDNGS--------LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT  318 (418)
T ss_pred             cCCCCceEEEEe--cceEEEEcCCCe--------EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC
Confidence            333222223322  334444443211        011122211111111  11  1122222358888999999998533


Q ss_pred             CCCeeEEEEecCCCCCEEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          436 NNQPSCIASRNPKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       436 ~~~~~~~~~~~~~~~~v~~~~~--spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +    +++.......+| ++..  -++-+.+|++-+.+|.+.+-=+.|...+..
T Consensus       319 ~----L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~  367 (418)
T PF14727_consen  319 T----LVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQ  367 (418)
T ss_pred             e----EEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCcccc
Confidence            2    334433333343 2322  223334788899999999988888765443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.83  E-value=2.4  Score=44.04  Aligned_cols=121  Identities=12%  Similarity=0.099  Sum_probs=70.0

Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecCCeEEEEeC--CCCCCEEEEEeCCCeEEEEECCCCC
Q 010769          310 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWD--PHAEHSFVVSLEDGTIKGFDIRTAK  386 (502)
Q Consensus       310 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~i~d~~~~~  386 (502)
                      ..++-+.-+.-+ ...++-+....+.|||.+...... ..+.....|..+.|.  |++. .+++.+-...|.+|--....
T Consensus        30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchh
Confidence            344445555544 455555556689999998776322 122347789999995  5555 45555567777777543221


Q ss_pred             CCCCCCCCCccEEE--ecCC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010769          387 SDPDSTSQQSSFTL--HAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       387 ~~~~~~~~~~~~~~--~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      .....+...++..+  ..|+ .+|....|.++| . |++|+ .+.+.|++-.
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~-LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-T-LVVGS-GNQLFVFDKW  156 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCC-e-EEEEe-CCEEEEECCC
Confidence            11111112344433  3444 689999999987 4 44443 3468888643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.76  E-value=0.54  Score=45.65  Aligned_cols=169  Identities=13%  Similarity=0.061  Sum_probs=95.5

Q ss_pred             eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee--cC----CeE-EEEeCCCCCCEEEEEeCC
Q 010769          302 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV--AA----DVE-SLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       302 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~----~v~-~v~~~p~~~~~l~~~~~d  374 (502)
                      +..+..-...|..+-..|++ +.+..-+. ..+.++++.+..........  .+    .|+ ++..- .|...++++..|
T Consensus       213 i~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~d  289 (733)
T COG4590         213 IRLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHED  289 (733)
T ss_pred             hhhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCC
Confidence            33344455678888899999 66655544 67888888765433221111  11    121 11111 244568888889


Q ss_pred             CeEEEE-ECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769          375 GTIKGF-DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       375 g~i~i~-d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      |.|.-| |++......    ...++.+.-...++.-+.--. ..+-+++-+..|++.++.....++......   ...+.
T Consensus       290 G~vsQWFdvr~~~~p~----l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~  361 (733)
T COG4590         290 GLVSQWFDVRRDGQPH----LNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQ  361 (733)
T ss_pred             CceeeeeeeecCCCCc----ceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhh---hcCcc
Confidence            888766 666552100    111222222223333333222 236678888899998887666654322222   23466


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          454 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       454 ~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      -+++||.+.+++.  -..|.++++.+.+..
T Consensus       362 ~~~~Sp~~~~Ll~--e~~gki~~~~l~Nr~  389 (733)
T COG4590         362 LVAMSPNQAYLLS--EDQGKIRLAQLENRN  389 (733)
T ss_pred             eeeeCcccchhee--ecCCceEEEEecCCC
Confidence            7899999997443  456789999987644

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.75  E-value=4.8  Score=35.90  Aligned_cols=149  Identities=12%  Similarity=0.166  Sum_probs=86.7

Q ss_pred             CCeEEEEEcCCCCcEEEEEEC----------CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEE
Q 010769          310 DKVQAVAWNHHSPQILLSGSF----------DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG  379 (502)
Q Consensus       310 ~~v~~l~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i  379 (502)
                      ...+.-..+|+| ++ ..|..          .|.++.|-..  ..+...+..-.--+.++|+.+...+.++-+.+-.|.-
T Consensus       109 nR~NDgkvdP~G-ry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a  184 (310)
T KOG4499|consen  109 NRLNDGKVDPDG-RY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA  184 (310)
T ss_pred             cccccCccCCCC-ce-eeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence            345556678888 55 33332          2334444332  2222334444455678999887767777778888877


Q ss_pred             EE--CCCCCCCCCCCCCCccEEEecC----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769          380 FD--IRTAKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       380 ~d--~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      ||  ..++....    .+.++.+...    .-.--.+++...| ++.+++-..++|..+|..+++.  +.++......|+
T Consensus       185 ~dyd~~tG~~sn----r~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~--L~eiklPt~qit  257 (310)
T KOG4499|consen  185 YDYDCPTGDLSN----RKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKI--LLEIKLPTPQIT  257 (310)
T ss_pred             eecCCCcccccC----cceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCCcE--EEEEEcCCCceE
Confidence            77  55543211    1333333221    1112334455555 7777777889999999999994  444444577899


Q ss_pred             EEEEcCC-CCcEEEEEe
Q 010769          454 SVAFSED-SPFVLAIGG  469 (502)
Q Consensus       454 ~~~~spd-~~~llasg~  469 (502)
                      |++|--. -..+.+++.
T Consensus       258 sccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  258 SCCFGGKNLDILYVTTA  274 (310)
T ss_pred             EEEecCCCccEEEEEeh
Confidence            9999644 232344443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.73  E-value=4  Score=43.01  Aligned_cols=113  Identities=11%  Similarity=0.057  Sum_probs=73.8

Q ss_pred             ceeeEEecCC-CCcEEEEEecCCcEEEEECCC-------C-------------eeeEEeccCCCCeEEEEEc--CCCCcE
Q 010769          268 SVLGLAWNKE-FRNILASASADKQVKIWDVAA-------G-------------KCNLTLEHHTDKVQAVAWN--HHSPQI  324 (502)
Q Consensus       268 ~V~~l~~~~~-~~~~l~sgs~Dg~v~vwd~~~-------~-------------~~~~~~~~h~~~v~~l~~~--~~~~~~  324 (502)
                      .|+.|....- +..+|+.|..||.|.+|.+.+       .             ++-..+. ....+++|+++  ... ++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rl  179 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RL  179 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eE
Confidence            4555544322 245899999999999997531       0             0112222 34578999998  555 78


Q ss_pred             EEEEECCCcEEEEeCCCC--CCc-cceEeecCCeEEEEeCCCC--CC---EEEEEeCCCeEEEEEC
Q 010769          325 LLSGSFDRSVVMKDARIS--THS-GFKWAVAADVESLAWDPHA--EH---SFVVSLEDGTIKGFDI  382 (502)
Q Consensus       325 l~s~~~dg~i~vwd~~~~--~~~-~~~~~~~~~v~~v~~~p~~--~~---~l~~~~~dg~i~i~d~  382 (502)
                      +|+++....|.||-....  +.. .....+...|.+|+|.++.  +.   .+++++-.|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888888888888765542  111 1122466779999997754  22   6777889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.37  E-value=0.011  Score=57.38  Aligned_cols=136  Identities=17%  Similarity=0.163  Sum_probs=92.3

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .+.+.-+++++.+..+..||-...-.                             ....-++....++|..++...++.+
T Consensus        43 ~~e~~nlavaca~tiv~~YD~agq~~-----------------------------le~n~tg~aldm~wDkegdvlavlA   93 (615)
T KOG2247|consen   43 RPEGHNLAVACANTIVIYYDKAGQVI-----------------------------LELNPTGKALDMAWDKEGDVLAVLA   93 (615)
T ss_pred             ecCCCceehhhhhhHHHhhhhhccee-----------------------------cccCCchhHhhhhhccccchhhhhh
Confidence            45555588888888888888532100                             0012346677888888877677778


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  365 (502)
                      -..+.+.+|++.+......=.+.+..-.-+.|++.. ..++.+...|.+.+++.++.+.....-.|...+++++|.+.+ 
T Consensus        94 ek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-  171 (615)
T KOG2247|consen   94 EKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-  171 (615)
T ss_pred             hcCCCeeechhhhhhHHHHhccCcchHHHHhhccCC-ccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-
Confidence            888999999998653221111111122227888877 778888899999999999887776555688899999999854 


Q ss_pred             CEEEEEeC
Q 010769          366 HSFVVSLE  373 (502)
Q Consensus       366 ~~l~~~~~  373 (502)
                       +.+.++.
T Consensus       172 -~vil~dc  178 (615)
T KOG2247|consen  172 -YVILCDC  178 (615)
T ss_pred             -eeeecCc
Confidence             3444443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.35  E-value=4.1  Score=38.51  Aligned_cols=151  Identities=10%  Similarity=0.084  Sum_probs=72.5

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-CC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-ST  343 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~  343 (502)
                      -...+..+.-+++ +.++++++.-....-|+.-...-...-+..+..|++|.|.|++ .+.+ ....|.|++-+... ..
T Consensus       143 ~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  143 TSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-NLWM-LARGGQIQFSDDPDDGE  219 (302)
T ss_dssp             ----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEE
T ss_pred             CcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC-CEEE-EeCCcEEEEccCCCCcc
Confidence            3467888888888 4577777665566678754322222223356899999999997 5544 44888888877211 11


Q ss_pred             C----ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe---cCCCCeeEEEEcCCC
Q 010769          344 H----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLV  416 (502)
Q Consensus       344 ~----~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~  416 (502)
                      .    ........-.+..++|.+.+. +++ ++..|.+. .....+         +.-....   .-...+..|.|.+. 
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa-~gg~G~l~-~S~DgG---------ktW~~~~~~~~~~~n~~~i~f~~~-  286 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNE-IWA-VGGSGTLL-VSTDGG---------KTWQKDRVGENVPSNLYRIVFVNP-  286 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS--EEE-EESTT-EE-EESSTT---------SS-EE-GGGTTSSS---EEEEEET-
T ss_pred             ccccccCCcccCceeeEEEEecCCCC-EEE-EeCCccEE-EeCCCC---------ccceECccccCCCCceEEEEEcCC-
Confidence            0    000111223478899998644 444 55566543 333333         2222222   22455788888764 


Q ss_pred             CCEEEEEeCCCcEEEE
Q 010769          417 PNLLATGSTDKMVKLW  432 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vw  432 (502)
                       ..-.+.+.+|.|--|
T Consensus       287 -~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  287 -DKGFVLGQDGVLLRY  301 (302)
T ss_dssp             -TEEEEE-STTEEEEE
T ss_pred             -CceEEECCCcEEEEe
Confidence             334444567766544

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=93.33  E-value=7  Score=36.55  Aligned_cols=96  Identities=14%  Similarity=0.221  Sum_probs=61.8

Q ss_pred             CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE------CCCcEEEEeCCCCCCccceE----eecCCeEEE
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKW----AVAADVESL  358 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~----~~~~~v~~v  358 (502)
                      ..|++||..+.+-..--.+-.+.|++|.|..+. .++++|.      ....+..||+.+..-.....    ...+++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence            459999988877665555667899999998555 6777664      35567889987765322222    235778888


Q ss_pred             EeCCC-CCCEEEEEe-C--CCeEEEEECCCC
Q 010769          359 AWDPH-AEHSFVVSL-E--DGTIKGFDIRTA  385 (502)
Q Consensus       359 ~~~p~-~~~~l~~~~-~--dg~i~i~d~~~~  385 (502)
                      .+... ...+++.|. .  +..|..||-.+.
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W  125 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSW  125 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCce
Confidence            77443 333454544 2  334777765544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.30  E-value=6.5  Score=36.09  Aligned_cols=168  Identities=10%  Similarity=0.033  Sum_probs=96.0

Q ss_pred             eeeEEeccC-CCCeEEEEEcCCCCcEEEEEECCC--cEEEEeCCCCCCccceEeecCC--eEEEEeCCCCCCEEEEEeCC
Q 010769          300 KCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAAD--VESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       300 ~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~~~~~d  374 (502)
                      +.+.++.+. ..-.+.+.|..++ .++-+.+.-|  .|+.+|+.+++... .......  -..++..  +..++...-.+
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~-~~~l~~~~FgEGit~~--~d~l~qLTWk~  109 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQ-SVPLPPRYFGEGITIL--GDKLYQLTWKE  109 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEE-EEE-TTT--EEEEEEE--TTEEEEEESSS
T ss_pred             EEEEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEE-EEECCccccceeEEEE--CCEEEEEEecC
Confidence            345555422 3456788886666 7777777766  78899999876543 2222222  2333333  24466677788


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC---CCC
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK---AGA  451 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~---~~~  451 (502)
                      +...+||..+.         +.+.++. ..+.-..++..  + ..|+.......++++|..+.+..........   ...
T Consensus       110 ~~~f~yd~~tl---------~~~~~~~-y~~EGWGLt~d--g-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~  176 (264)
T PF05096_consen  110 GTGFVYDPNTL---------KKIGTFP-YPGEGWGLTSD--G-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN  176 (264)
T ss_dssp             SEEEEEETTTT---------EEEEEEE--SSS--EEEEC--S-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred             CeEEEEccccc---------eEEEEEe-cCCcceEEEcC--C-CEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence            99999999876         5555554 33556777733  4 4455544466799999887664333222222   234


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       452 v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      ++-+.|. +|. +.|-.=....|...|..+|..+.
T Consensus       177 LNELE~i-~G~-IyANVW~td~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  177 LNELEYI-NGK-IYANVWQTDRIVRIDPETGKVVG  209 (264)
T ss_dssp             EEEEEEE-TTE-EEEEETTSSEEEEEETTT-BEEE
T ss_pred             cEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCeEEE
Confidence            5667775 443 56655566677788888887654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.11  E-value=7.2  Score=36.07  Aligned_cols=167  Identities=14%  Similarity=0.125  Sum_probs=102.3

Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec--CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCC
Q 010769          309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA--ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK  386 (502)
Q Consensus       309 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~  386 (502)
                      .+-+..+.++.   ++...+..+.-++++|+.++..+.......  +-..++..+  | ++.+++..+.-+.++|+....
T Consensus        86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdps  159 (370)
T COG5276          86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCC
Confidence            34455666664   567777788889999999988765443332  333444443  3 477777756667789998773


Q ss_pred             CCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEE
Q 010769          387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVL  465 (502)
Q Consensus       387 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll  465 (502)
                      .      ....-+.......-..++.|  | ++...+..|+-+.+-|+.+... .++.... -...+.++..+++.-| +
T Consensus       160 s------P~lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y-~  228 (370)
T COG5276         160 S------PQLAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAY-L  228 (370)
T ss_pred             C------ceeeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeE-E
Confidence            2      12223333334444667777  3 6777777899999999987653 3333332 3336888988888764 4


Q ss_pred             EEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769          466 AIGGSKGKLEIWDTLSDAGISNRFSKYSKP  495 (502)
Q Consensus       466 asg~~dg~i~vwd~~~~~~~~~~~~~~~~~  495 (502)
                      +. ... .+.+-|..+.+. .++|+.+...
T Consensus       229 vv-y~e-gvlivd~s~~ss-p~~~gsyet~  255 (370)
T COG5276         229 VV-YDE-GVLIVDVSGPSS-PTVFGSYETS  255 (370)
T ss_pred             EE-ccc-ceEEEecCCCCC-ceEeeccccC
Confidence            43 333 467777755442 3445554443

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=93.11  E-value=0.035  Score=53.33  Aligned_cols=12  Identities=8%  Similarity=0.326  Sum_probs=7.3

Q ss_pred             CCCCEEEEecCC
Q 010769          207 EKGNFMAVGSME  218 (502)
Q Consensus       207 ~~~~~la~g~~d  218 (502)
                      |+..=|++|+.|
T Consensus       190 PDSTDFVCGTLD  201 (458)
T PF10446_consen  190 PDSTDFVCGTLD  201 (458)
T ss_pred             CCcccccCCCcC
Confidence            556666666654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.99  E-value=0.44  Score=29.94  Aligned_cols=33  Identities=24%  Similarity=0.238  Sum_probs=27.6

Q ss_pred             cceeeEEecCCCC--cEEEEEecCCcEEEEECCCC
Q 010769          267 DSVLGLAWNKEFR--NILASASADKQVKIWDVAAG  299 (502)
Q Consensus       267 ~~V~~l~~~~~~~--~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      ++|.++.|+|...  .+|+.+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4689999998745  68888888899999999853

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=92.97  E-value=7.6  Score=39.72  Aligned_cols=58  Identities=10%  Similarity=0.063  Sum_probs=30.0

Q ss_pred             CcEEEEEecCC---cEEEEECCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769          279 RNILASASADK---QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       279 ~~~l~sgs~Dg---~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  342 (502)
                      +.+.+.|+.++   ++..||..+.+-..  .+.........+.+  ++ .+.+.|   |.+.+||.++.
T Consensus       363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~-~IYv~G---G~~e~ydp~~~  425 (480)
T PHA02790        363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GR-RLFLVG---RNAEFYCESSN  425 (480)
T ss_pred             CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CC-EEEEEC---CceEEecCCCC
Confidence            45667777553   47788887664332  11111111122222  33 566666   35678887654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.97  E-value=5.6  Score=41.97  Aligned_cols=105  Identities=16%  Similarity=0.148  Sum_probs=69.8

Q ss_pred             cEEEEEECCCcEEEEeCCC-------C----C--------CccceEeecCCeEEEEeC--CCCCCEEEEEeCCCeEEEEE
Q 010769          323 QILLSGSFDRSVVMKDARI-------S----T--------HSGFKWAVAADVESLAWD--PHAEHSFVVSLEDGTIKGFD  381 (502)
Q Consensus       323 ~~l~s~~~dg~i~vwd~~~-------~----~--------~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~i~d  381 (502)
                      .+|+.+..||.|.+|.+..       .    .        .+.........++.++++  .. .+++++++....|.+|-
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~-~rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK-SRLIAVSSNSQEVTVFA  193 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc-ceEEEEecCCceEEEEE
Confidence            6889999999999997531       0    0        012233456678889987  43 44788888888888876


Q ss_pred             CCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC--CC---EEEEEeCCCcEEEEEC
Q 010769          382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PN---LLATGSTDKMVKLWDL  434 (502)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--~~---~l~t~s~dg~i~vwd~  434 (502)
                      ......      ......-..|...|.+|+|.++.  +.   .|++++-.|.+.+|++
T Consensus       194 f~l~~~------r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  194 FALVDE------RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             Eecccc------ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            654311      01111122366778899998754  22   7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.68  E-value=3.9  Score=40.76  Aligned_cols=83  Identities=10%  Similarity=0.032  Sum_probs=52.6

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCcEEEEE---------CCCCCeeEE----------EEecCCCCCEEEEEEcCCC--Cc
Q 010769          405 KAVCTISYNPLVPNLLATGSTDKMVKLWD---------LSNNQPSCI----------ASRNPKAGAVFSVAFSEDS--PF  463 (502)
Q Consensus       405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd---------~~~~~~~~~----------~~~~~~~~~v~~~~~spd~--~~  463 (502)
                      -.|..+..++.| ..++-.|.+|.+.++=         +..+++...          ++... .-.+..++|+|+.  .-
T Consensus       104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~-~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST-SLTLKQAAWHPSSILDP  181 (741)
T ss_pred             EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC-ceeeeeccccCCccCCc
Confidence            357788889988 7777777788655542         122332211          11111 1246788999986  22


Q ss_pred             EEEEEeCCCcEEEEECCCCccccccc
Q 010769          464 VLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       464 llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .|..-++|..||+|+++....+...-
T Consensus       182 hL~iL~sdnviRiy~lS~~telylqp  207 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSEPTELYLQP  207 (741)
T ss_pred             eEEEEecCcEEEEEecCCcchhhccC
Confidence            35566789999999999887774433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.53  E-value=9.1  Score=35.75  Aligned_cols=219  Identities=12%  Similarity=0.124  Sum_probs=116.9

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECC------CC-eeeEEecc-----CCCCeEEEEEcCCC-----------CcE
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVA------AG-KCNLTLEH-----HTDKVQAVAWNHHS-----------PQI  324 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~------~~-~~~~~~~~-----h~~~v~~l~~~~~~-----------~~~  324 (502)
                      .-+.|+++|. +.+-++....+...+||..      .. ..+-++..     .....+.+.|+...           ...
T Consensus        24 N~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            3578999998 4577777778899999986      12 22333331     23467788887443           134


Q ss_pred             EEEEECCCcEEEEeCCCCCC---cc-ceEe--ecCCe-EEEEeC--CCCCCEEEEEeCCCeEEEEECCCCCCCCC-----
Q 010769          325 LLSGSFDRSVVMKDARISTH---SG-FKWA--VAADV-ESLAWD--PHAEHSFVVSLEDGTIKGFDIRTAKSDPD-----  390 (502)
Q Consensus       325 l~s~~~dg~i~vwd~~~~~~---~~-~~~~--~~~~v-~~v~~~--p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----  390 (502)
                      ++.++.+|+|.-|.......   .. ....  ..+.| .-+++.  ..+..+.++--..++|.+||-.-......     
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D  182 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID  182 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence            67888999999998543222   11 1111  11222 234443  22344455556789999998654321000     


Q ss_pred             --CCCCCccEEEecCCC--CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcC------C
Q 010769          391 --STSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE------D  460 (502)
Q Consensus       391 --~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp------d  460 (502)
                        .+..-..+.+..-.+  .|+-..-.+.. +.=+.|..-|.|-+||+...- .......+....-+.|+..|      .
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l-~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQL-LRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcE-EEEeccCCcccCCceeeeChhhhCCCC
Confidence              000000000000000  11111112222 222333345789999987542 22222334445566777755      3


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769          461 SPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       461 ~~~llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      +. ||+---.||+|..||..++..+..+..
T Consensus       261 g~-lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       261 GA-LLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             CC-eEEeecCCceeEEecCCCCceeeeecC
Confidence            45 566555699999999998886655443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.29  E-value=6.8  Score=40.94  Aligned_cols=181  Identities=10%  Similarity=0.110  Sum_probs=92.7

Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE---eecCCe-EEEEeCC
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAADV-ESLAWDP  362 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v-~~v~~~p  362 (502)
                      .--.|+|+++ +|+.+..+.-....+..+.|+.+.  -|++...+|++++|++-.........   .....| .|-.|+ 
T Consensus        62 a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-  137 (829)
T KOG2280|consen   62 ARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-  137 (829)
T ss_pred             cceeEEEEec-cccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-
Confidence            3456888885 466666664444588899999876  68888999999999986543322111   112233 444444 


Q ss_pred             CCCCEEEEEeCCCeEEEE-ECCCCCCCCCCCCCCccEEEec---CCCCeeEEEEcCCC--CCEEEEEe-CCCcEEEEECC
Q 010769          363 HAEHSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLV--PNLLATGS-TDKMVKLWDLS  435 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~sp~~--~~~l~t~s-~dg~i~vwd~~  435 (502)
                      . +  +++-..+|.+.+- +....          ..+++..   ..-+-+|-...+..  ...++-.. ..+ ..++-..
T Consensus       138 ~-G--Vavlt~~g~v~~i~~~~~~----------~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~  203 (829)
T KOG2280|consen  138 N-G--VAVLTVSGQVILINGVEEP----------KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVE  203 (829)
T ss_pred             C-c--eEEEecCCcEEEEcCCCcc----------hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hccccee
Confidence            2 3  4444455555443 33221          1111111   11111121111111  01111111 011 1122222


Q ss_pred             CCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          436 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       436 ~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      .... ....+....+.+..+..||++++ ||--...|.|.+-.+...+.+..
T Consensus       204 ~~~~-q~~~~~~~~~~~~ki~VS~n~~~-laLyt~~G~i~~vs~D~~~~lce  253 (829)
T KOG2280|consen  204 ESRV-QLHALSWPNSSVVKISVSPNRRF-LALYTETGKIWVVSIDLSQILCE  253 (829)
T ss_pred             cccc-cccccCCCCceEEEEEEcCCcce-EEEEecCCcEEEEecchhhhhhc
Confidence            2111 12222222467888999999996 88888899998888776655433

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.24  E-value=10  Score=35.71  Aligned_cols=176  Identities=9%  Similarity=0.071  Sum_probs=92.3

Q ss_pred             cEEEEECCCCeeeEEecc------CCCCeEEEEEcCCCC-----cEEEEEECCCcEEEEeCCCCCCccc-----------
Q 010769          290 QVKIWDVAAGKCNLTLEH------HTDKVQAVAWNHHSP-----QILLSGSFDRSVVMKDARISTHSGF-----------  347 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~-----~~l~s~~~dg~i~vwd~~~~~~~~~-----------  347 (502)
                      .|.+||+.+++.++++.-      ..+.+..+.+.....     ...++=+..+.|.|+|+.+++....           
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            577889999888777642      235677777766321     3344444557899999987653221           


Q ss_pred             --------eEeecCCeEEEEeCC---CCCCEEEEEe-CCCeEEEEECCCCCCCCCCCC---CCccEEEecCCCCeeEEEE
Q 010769          348 --------KWAVAADVESLAWDP---HAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTS---QQSSFTLHAHDKAVCTISY  412 (502)
Q Consensus       348 --------~~~~~~~v~~v~~~p---~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~h~~~v~~l~~  412 (502)
                              .+.....+..++.+|   ++. .++-+. ....++-..............   ...+..+....+....+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r-~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGR-WLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCcc-EEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                    112233456666655   332 344333 222333332211110000000   0112222222246778899


Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCC----CCeeEEEEecCCCCCEEEEEEcC--CCCcEEEEE
Q 010769          413 NPLVPNLLATGSTDKMVKLWDLSN----NQPSCIASRNPKAGAVFSVAFSE--DSPFVLAIG  468 (502)
Q Consensus       413 sp~~~~~l~t~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~v~~~~~sp--d~~~llasg  468 (502)
                      .+.| .++++--..+.|..|+...    .....+..-......+.++.+.+  +|. |.+.+
T Consensus       194 D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~s  253 (287)
T PF03022_consen  194 DPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY-LWVLS  253 (287)
T ss_dssp             ETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred             CCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce-EEEEE
Confidence            9977 8888888889999999987    22223333222256788999999  776 44443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.20  E-value=5.8  Score=41.39  Aligned_cols=101  Identities=14%  Similarity=0.199  Sum_probs=62.0

Q ss_pred             EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-cCCCCeeEEEEc--CCCCCEEEEEeCCCcEEEEECC-----CCC
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYN--PLVPNLLATGSTDKMVKLWDLS-----NNQ  438 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s--p~~~~~l~t~s~dg~i~vwd~~-----~~~  438 (502)
                      ..++......+.|||.+.+         ...+... .....|..+.|.  |++ +.+++.|..+.|.+|--.     ...
T Consensus        43 ~a~V~~~~~~LtIWD~~~~---------~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSG---------VLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             EEEEECCCCEEEEEEcCCc---------EEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCC
Confidence            4445555668999999976         2222111 346789999886  466 677777788888888532     211


Q ss_pred             e----eEEEEecCCC-CCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          439 P----SCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       439 ~----~~~~~~~~~~-~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      |    ........+. .+|....|.++|.. ++ |+ .+.+.|++-.
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~L-vV-~s-GNqlfv~dk~  156 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTL-VV-GS-GNQLFVFDKW  156 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeE-EE-Ee-CCEEEEECCC
Confidence            1    1122222333 57899999999973 43 32 2368888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PLN02153 epithiospecifier protein

Probab=92.14  E-value=6.9  Score=37.97  Aligned_cols=55  Identities=20%  Similarity=0.277  Sum_probs=28.9

Q ss_pred             CcEEEEECCCCCeeEEEEec--CCCCCEEEEEEcCCCCcEEEEEeCC--------------CcEEEEECCCCc
Q 010769          427 KMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIWDTLSDA  483 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~llasg~~d--------------g~i~vwd~~~~~  483 (502)
                      ..|.+||+.+.+...+....  +......++.. -++. +++.||..              ..|..+|+.+..
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-VGKY-IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCcceeeeEE-ECCE-EEEECcccCCccccccccccccccEEEEEcCccE
Confidence            45889999887754443211  10111122222 2343 78888852              257788876543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.00  E-value=13  Score=36.30  Aligned_cols=198  Identities=13%  Similarity=0.145  Sum_probs=109.6

Q ss_pred             CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcC----CCCcE-EEEEE-CC---CcEEEEeCCCCCCccceE
Q 010769          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH----HSPQI-LLSGS-FD---RSVVMKDARISTHSGFKW  349 (502)
Q Consensus       279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~-l~s~~-~d---g~i~vwd~~~~~~~~~~~  349 (502)
                      ..+++.....+-+.+||+. |+.++.+.  .+.++.+....    .+... |+.++ .+   .+|++|-+..........
T Consensus        68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             G-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             cceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence            4578888888999999987 55566664  23444443321    22121 33333 32   469999775322111011


Q ss_pred             --------eecCCeEEEEe--CC-CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769          350 --------AVAADVESLAW--DP-HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       350 --------~~~~~v~~v~~--~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                              .....+..+|+  +| ++..++++...+|.+..|-+......  ......++.+.. .+.+-.|...... .
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g--~v~~~lVR~f~~-~sQ~EGCVVDDe~-g  220 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG--KVSATLVREFKV-GSQPEGCVVDDET-G  220 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS--SEEEEEEEEEE--SS-EEEEEEETTT-T
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC--cEeeEEEEEecC-CCcceEEEEeccc-C
Confidence                    11123455554  44 35557778889999998888632110  000234566654 4478888888766 7


Q ss_pred             EEEEEeCCCcEEEEECCCC---CeeEEEEecC--CCCCEEEEEEc--CCC-CcEEEEEeCCCcEEEEECCCCc
Q 010769          419 LLATGSTDKMVKLWDLSNN---QPSCIASRNP--KAGAVFSVAFS--EDS-PFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~---~~~~~~~~~~--~~~~v~~~~~s--pd~-~~llasg~~dg~i~vwd~~~~~  483 (502)
                      .|+.+=.+.-|.-|+....   ....+....+  ....|-.|+.-  +++ .|||++.-.+++..||+.....
T Consensus       221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~  293 (381)
T PF02333_consen  221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN  293 (381)
T ss_dssp             EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred             CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence            8999988877777777532   2223333322  34567777764  343 5788888788899999987643

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.68  E-value=12  Score=35.38  Aligned_cols=160  Identities=11%  Similarity=0.158  Sum_probs=75.5

Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCC
Q 010769          306 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       306 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~  385 (502)
                      ..-.+.+..+.-++++ .+++++..-..+.-|+--...-..........|.++.|.|++.  +......|.|++=+....
T Consensus       141 ~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~--lw~~~~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  141 SETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN--LWMLARGGQIQFSDDPDD  217 (302)
T ss_dssp             -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS---EEEEETTTEEEEEE-TTE
T ss_pred             cCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC--EEEEeCCcEEEEccCCCC
Confidence            3445778888889998 7666665555555676543322222333467799999999854  434458888888772221


Q ss_pred             CCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ecCCCCCEEEEEEcCCCCcE
Q 010769          386 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFV  464 (502)
Q Consensus       386 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~l  464 (502)
                      ....    .+++..+....-.+..++|.+.+ .+.++|+ .|.+ +.....++.-.... ...-.+.++.+.|.+... -
T Consensus       218 ~~~w----~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-g  289 (302)
T PF14870_consen  218 GETW----SEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-G  289 (302)
T ss_dssp             EEEE-------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-E
T ss_pred             cccc----ccccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-e
Confidence            0000    01111111223347889999875 5555554 4544 44555555211111 123345688888876654 2


Q ss_pred             EEEEeCCCcEEEE
Q 010769          465 LAIGGSKGKLEIW  477 (502)
Q Consensus       465 lasg~~dg~i~vw  477 (502)
                      ++ -|.+|.|.-|
T Consensus       290 f~-lG~~G~ll~~  301 (302)
T PF14870_consen  290 FV-LGQDGVLLRY  301 (302)
T ss_dssp             EE-E-STTEEEEE
T ss_pred             EE-ECCCcEEEEe
Confidence            44 4678877655

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.51  E-value=11  Score=37.08  Aligned_cols=149  Identities=7%  Similarity=0.029  Sum_probs=73.2

Q ss_pred             CCeEEEEEcCCCCcEEEEEE-----------CCC-cEEEEeCCCCCCc----cceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769          310 DKVQAVAWNHHSPQILLSGS-----------FDR-SVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       310 ~~v~~l~~~~~~~~~l~s~~-----------~dg-~i~vwd~~~~~~~----~~~~~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      .....|+|.++| +++++-.           ..+ .|.+++-....-.    ..+...-.....+++.+++   ++++..
T Consensus        14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G---lyV~~~   89 (367)
T TIGR02604        14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG---VYVATP   89 (367)
T ss_pred             CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC---EEEeCC
Confidence            456678888888 6555542           123 6666654432211    1111222345778888764   444444


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEE-Eec----CCCCeeEEEEcCCCCCEEEEEeCC-------------------CcE
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFT-LHA----HDKAVCTISYNPLVPNLLATGSTD-------------------KMV  429 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~----h~~~v~~l~~sp~~~~~l~t~s~d-------------------g~i  429 (502)
                      ...+++.|........ . ....+.. +..    +......++|.|+| .+.++-+..                   |.|
T Consensus        90 ~~i~~~~d~~gdg~ad-~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        90 PDILFLRDKDGDDKAD-G-EREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             CeEEEEeCCCCCCCCC-C-ccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceE
Confidence            4433344543221000 0 0111211 222    23457889999998 555543311                   345


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~  469 (502)
                      .-++....+.. +. ..++ .....++|+|+|. ++++-.
T Consensus       167 ~r~~pdg~~~e-~~-a~G~-rnp~Gl~~d~~G~-l~~tdn  202 (367)
T TIGR02604       167 FRYNPDGGKLR-VV-AHGF-QNPYGHSVDSWGD-VFFCDN  202 (367)
T ss_pred             EEEecCCCeEE-EE-ecCc-CCCccceECCCCC-EEEEcc
Confidence            55555544421 11 1222 3356899999998 465433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.41  E-value=12  Score=34.72  Aligned_cols=153  Identities=13%  Similarity=0.123  Sum_probs=95.7

Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc-CC-CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  343 (502)
                      .+-+..+.++.+   +...+..+.-++|.|+.+...-..+.. .. +--.++..  .| +++..+..+.-+.+.|+..++
T Consensus        86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sG-n~aYVadlddgfLivdvsdps  159 (370)
T COG5276          86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SG-NYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cC-CEEEEeeccCcEEEEECCCCC
Confidence            456777888765   677777888899999987643332211 12 33344444  45 778888877788899998877


Q ss_pred             CccceEee---cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC-CeeEEEEcCCCCCE
Q 010769          344 HSGFKWAV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNL  419 (502)
Q Consensus       344 ~~~~~~~~---~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~sp~~~~~  419 (502)
                      .+...-..   ......++.+-   ++.+++..++-+.+.|+...        ..+++.-.-..+ .+.++..+++. .+
T Consensus       160 sP~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp--------~sPvli~~~n~g~g~~sv~vsdnr-~y  227 (370)
T COG5276         160 SPQLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNP--------HSPVLIGSYNTGPGTYSVSVSDNR-AY  227 (370)
T ss_pred             CceeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCC--------CCCeEEEEEecCCceEEEEecCCe-eE
Confidence            65533222   22335666653   36777888999999999987        344444333333 78888888753 33


Q ss_pred             EEEEeCCCcEEEEECCCCC
Q 010769          420 LATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~  438 (502)
                      ++. ...| +.+-|..+.+
T Consensus       228 ~vv-y~eg-vlivd~s~~s  244 (370)
T COG5276         228 LVV-YDEG-VLIVDVSGPS  244 (370)
T ss_pred             EEE-cccc-eEEEecCCCC
Confidence            333 3333 5566665543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.40  E-value=14  Score=35.49  Aligned_cols=23  Identities=17%  Similarity=0.146  Sum_probs=15.8

Q ss_pred             CEEEEEeCCCc----EEEEECCCCCee
Q 010769          418 NLLATGSTDKM----VKLWDLSNNQPS  440 (502)
Q Consensus       418 ~~l~t~s~dg~----i~vwd~~~~~~~  440 (502)
                      ++.+.|+.++.    +.+||+.+.+..
T Consensus       173 ~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       173 ELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             EEEEEcCCCCccccceEEEecCCCeeE
Confidence            67777776543    568898887643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.31  E-value=2.9  Score=37.63  Aligned_cols=86  Identities=9%  Similarity=0.021  Sum_probs=55.1

Q ss_pred             EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-----ecCCCCeeEEEEcCCCCCEEEEE
Q 010769          349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       349 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .....++..+...  +. ++++-+.+|.+++||+.+.+......+..++...     ......|..+.++.+| .-|++-
T Consensus         9 i~Lgs~~~~l~~~--~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~l   84 (219)
T PF07569_consen    9 IVLGSPVSFLECN--GS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTL   84 (219)
T ss_pred             EecCCceEEEEeC--CC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEE
Confidence            3344555555543  33 7888999999999999987543322111111111     0356778999999877 666665


Q ss_pred             eCCCcEEEEECCCCCe
Q 010769          424 STDKMVKLWDLSNNQP  439 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~  439 (502)
                      + +|..+.|+..-+..
T Consensus        85 s-ng~~y~y~~~L~~W   99 (219)
T PF07569_consen   85 S-NGDSYSYSPDLGCW   99 (219)
T ss_pred             e-CCCEEEecccccee
Confidence            5 57889998876654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.26  E-value=17  Score=36.10  Aligned_cols=152  Identities=11%  Similarity=0.111  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCcEEEEEECCCcEE-EEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 010769          312 VQAVAWNHHSPQILLSGSFDRSVV-MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD  390 (502)
Q Consensus       312 v~~l~~~~~~~~~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  390 (502)
                      ...+..++++ .+++.+. .|.+. -||--...=..........+..+.|.+++. +++ .+..|.+.. ....+.... 
T Consensus       241 f~~v~~~~dG-~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l-~g~~G~l~~-S~d~G~~~~-  314 (398)
T PLN00033        241 FSTVNRSPDG-DYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWL-LTRGGGLYV-SKGTGLTEE-  314 (398)
T ss_pred             eeeEEEcCCC-CEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEE-EeCCceEEE-ecCCCCccc-
Confidence            3445556665 4444443 34332 333221100111223345688899988765 444 445666543 222221000 


Q ss_pred             CCCCCccEEEec--CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEE
Q 010769          391 STSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAI  467 (502)
Q Consensus       391 ~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llas  467 (502)
                         .........  ....+..+.|.+++ . ++.++..|.+.... ..++. ........-...++.+.|.+++. .++ 
T Consensus       315 ---~~~f~~~~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~-  386 (398)
T PLN00033        315 ---DFDFEEADIKSRGFGILDVGYRSKK-E-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFV-  386 (398)
T ss_pred             ---ccceeecccCCCCcceEEEEEcCCC-c-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEE-
Confidence               001111111  12358889998865 4 55556677665553 33432 12111223345788999988776 354 


Q ss_pred             EeCCCcEEEE
Q 010769          468 GGSKGKLEIW  477 (502)
Q Consensus       468 g~~dg~i~vw  477 (502)
                      .|.+|.|.-|
T Consensus       387 ~G~~G~il~~  396 (398)
T PLN00033        387 LGNDGVLLRY  396 (398)
T ss_pred             EeCCcEEEEe
Confidence            4678877655

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=91.26  E-value=16  Score=35.98  Aligned_cols=50  Identities=16%  Similarity=0.148  Sum_probs=24.5

Q ss_pred             EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC------cEEEEECCC
Q 010769          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------KLEIWDTLS  481 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg------~i~vwd~~~  481 (502)
                      +.+||+.+.+...+...........  +..-++. ++++||...      .|.++....
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~~~~--av~~~~~-iyv~GG~~~~~~~~~~v~~~~~~~  369 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLAYGV--SVSWNNG-VLLIGGETAGGKAVSDVTLLSWDG  369 (376)
T ss_pred             hheEEecCCcccccCcCCCCccceE--EEEeCCE-EEEEcCCCCCCcEeeeEEEEEEcC
Confidence            4578888776433322221111122  2333454 677887642      455555544

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.92  E-value=7.5  Score=31.52  Aligned_cols=120  Identities=11%  Similarity=0.158  Sum_probs=70.4

Q ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC----CCCEEEEEeCCCcEEEE
Q 010769          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL----VPNLLATGSTDKMVKLW  432 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~l~t~s~dg~i~vw  432 (502)
                      .-.|....+ .|++++.-|.|.+++.......... ....+.. ..-...|++|+-.+-    ....|+.|+. .++..|
T Consensus         3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~-LNin~~italaaG~l~~~~~~D~LliGt~-t~llaY   78 (136)
T PF14781_consen    3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR-QDSDISF-LNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAY   78 (136)
T ss_pred             EEEeCCCce-eEEEEecCCEEEEECCCcccccccc-ccCceeE-EECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEE
Confidence            345666555 6888889999999987654221111 0122333 335667888765552    3356777765 569999


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEc---C-CCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFS---E-DSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~s---p-d~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      |+..+.-  ++....+ ..|.++.+-   . ..+ ++++ |.+..|.-||....+..
T Consensus        79 DV~~N~d--~Fyke~~-DGvn~i~~g~~~~~~~~-l~iv-GGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   79 DVENNSD--LFYKEVP-DGVNAIVIGKLGDIPSP-LVIV-GGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             EcccCch--hhhhhCc-cceeEEEEEecCCCCCc-EEEE-CceEEEEEeCCCCcEEE
Confidence            9998863  3332222 446666662   2 234 4444 45667887777655543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=90.79  E-value=17  Score=35.32  Aligned_cols=41  Identities=24%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC
Q 010769          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d  471 (502)
                      .+.+||..+.+...+..+...  .-...+..-++. +++.||.+
T Consensus       291 ~~e~yd~~~~~W~~~~~lp~~--~~~~~~~~~~~~-iyv~GG~~  331 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGKLPQG--LAYGVSVSWNNG-VLLIGGEN  331 (346)
T ss_pred             EeeEEEecCCcccccCCCCCC--ceeeEEEEcCCE-EEEEeccC
Confidence            467888877654333322211  112223333454 67778765

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=90.64  E-value=17  Score=35.20  Aligned_cols=23  Identities=9%  Similarity=0.163  Sum_probs=14.7

Q ss_pred             CcEEEEEecC-----CcEEEEECCCCee
Q 010769          279 RNILASASAD-----KQVKIWDVAAGKC  301 (502)
Q Consensus       279 ~~~l~sgs~D-----g~v~vwd~~~~~~  301 (502)
                      ..+++.|+.+     ..+.+||+.+.+-
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W  113 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTVKNEW  113 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECCCCEE
Confidence            3466667653     3578889877643

>PLN02193 nitrile-specifier protein

Probab=90.30  E-value=9.1  Score=39.06  Aligned_cols=64  Identities=16%  Similarity=0.167  Sum_probs=35.4

Q ss_pred             CEEEEEeCC----CcEEEEECCCCCeeEEEEec--CCCCCEEEEEEcCCCCcEEEEEeCC--------------CcEEEE
Q 010769          418 NLLATGSTD----KMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIW  477 (502)
Q Consensus       418 ~~l~t~s~d----g~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~llasg~~d--------------g~i~vw  477 (502)
                      .+++.++.+    ..+.+||+.+.+...+....  +......+++. -++. +++.||..              ..+.+|
T Consensus       330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~ndv~~~  407 (470)
T PLN02193        330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKH-IVIFGGEIAMDPLAHVGPGQLTDGTFAL  407 (470)
T ss_pred             cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCE-EEEECCccCCccccccCccceeccEEEE
Confidence            666666655    45899999988754443221  11111122222 2344 77888853              247888


Q ss_pred             ECCCCc
Q 010769          478 DTLSDA  483 (502)
Q Consensus       478 d~~~~~  483 (502)
                      |+.+.+
T Consensus       408 D~~t~~  413 (470)
T PLN02193        408 DTETLQ  413 (470)
T ss_pred             EcCcCE
Confidence            887653

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.99  E-value=1.6  Score=45.49  Aligned_cols=96  Identities=16%  Similarity=0.164  Sum_probs=46.7

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCC---CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecC---CCCc
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVID---EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRN  280 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~  280 (502)
                      ++...|+++..||.+.........   ........+.............   .. ......-...+..++++.   ++..
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~  231 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFP---WS-YRGDNSSSSVAASLAVSSSEINDDT  231 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS----TT----SSSS---EEEEEE-----ETTT
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCC---cc-cccCCCCCCccceEEEecceeCCCC
Confidence            367788888999998888876422   1111111110000000000000   00 000111234455555555   2367


Q ss_pred             EEEEEecCCcEEEEECCCCeeeEEec
Q 010769          281 ILASASADKQVKIWDVAAGKCNLTLE  306 (502)
Q Consensus       281 ~l~sgs~Dg~v~vwd~~~~~~~~~~~  306 (502)
                      +|++.+.|+++|+||+.+++++.++.
T Consensus       232 ~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  232 FLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCeEEEEec
Confidence            99999999999999999999977653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.93  E-value=9.2  Score=31.00  Aligned_cols=110  Identities=18%  Similarity=0.159  Sum_probs=65.8

Q ss_pred             EEecCCCCcEEEEEecCCcEEEEECCCCe--------eeEEeccCCCCeEEEEEcCC----CCcEEEEEECCCcEEEEeC
Q 010769          272 LAWNKEFRNILASASADKQVKIWDVAAGK--------CNLTLEHHTDKVQAVAWNHH----SPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~--------~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~vwd~  339 (502)
                      -.|.... ..|++++.-|.|.|++.....        .+..+. -...|++|+-.+-    +...|+.|+ ...|..||+
T Consensus         4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            3455553 367888888999999876432        334443 4567777765442    235566665 567999999


Q ss_pred             CCCCCccceEeecCCeEEEEeCCCC--CCEEEEEeCCCeEEEEECCCC
Q 010769          340 RISTHSGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~dg~i~i~d~~~~  385 (502)
                      ....-.. .......+.++.+-.-+  +.-++..+.+..|.-||..-.
T Consensus        81 ~~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~  127 (136)
T PF14781_consen   81 ENNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN  127 (136)
T ss_pred             ccCchhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence            8765443 33445667777662211  123444445677777776543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.62  E-value=6.8  Score=38.44  Aligned_cols=124  Identities=6%  Similarity=0.090  Sum_probs=79.2

Q ss_pred             eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ...++|.++.|+++.. .+++-..+..|.+++.......     .......+..+..|.++.|+.+  .-+|..+..| +
T Consensus        64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~-----l~~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~  134 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ-----LEYTQECKTKNANILGFCWTSS--TEIAFITDQG-I  134 (657)
T ss_pred             cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh-----hHHHHHhccCcceeEEEEEecC--eeEEEEecCC-e
Confidence            3456899999999865 8999999999999988543110     1122233344556899999975  3455555444 7


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCc
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDA  483 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~-~dg~i~vwd~~~~~  483 (502)
                      -+|-....+. .+.....|...|.-..|+++.+.+|.+.+ ..+++.=+.++++.
T Consensus       135 e~y~v~pekr-slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  135 EFYQVLPEKR-SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             EEEEEchhhh-hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence            7776554331 23344556667888889999875555555 44455555555544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=89.42  E-value=17  Score=33.39  Aligned_cols=198  Identities=11%  Similarity=0.072  Sum_probs=111.5

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      ..-..++-.|+ +..-+++...+.|--.|..+|+....--+....-..|..-|++.. -++-+.. .|.-.|-++.....
T Consensus        62 ~ap~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~-Witd~~~-aI~R~dpkt~evt~  138 (353)
T COG4257          62 SAPFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSA-WITDTGL-AIGRLDPKTLEVTR  138 (353)
T ss_pred             CCccccccCCC-CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCe-eEecCcc-eeEEecCcccceEE
Confidence            44566777888 457788888888888898998876655555666677888888843 3332222 45545554443322


Q ss_pred             ceE---eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEE
Q 010769          347 FKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       347 ~~~---~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t  422 (502)
                      ...   ......+...|.+.|. +.+++. .|.---.|-.          ...+..+.. ....-+.|+..|+| .+-++
T Consensus       139 f~lp~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa----------~~~i~vfpaPqG~gpyGi~atpdG-svwya  205 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPA----------RNVISVFPAPQGGGPYGICATPDG-SVWYA  205 (353)
T ss_pred             eecccccCCCcccceeeCCCcc-EEEeec-cccceecCcc----------cCceeeeccCCCCCCcceEECCCC-cEEEE
Confidence            111   2245578889999875 566654 2211111111          122222222 22345778888988 55555


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      .-.++.|-..|...+....+-...........+--+|.++ +-++-...+.+..+|...
T Consensus       206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~  263 (353)
T COG4257         206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             eccccceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCccc
Confidence            5556667777766654322322222223344555566666 455555556666666544

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.42  E-value=1.9  Score=26.31  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=23.2

Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEeCC--CcEEEE
Q 010769          447 PKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIW  477 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~llasg~~d--g~i~vw  477 (502)
                      ...+.-....|+|||++++.++...  |...||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445678899999999888888877  777776

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.25  E-value=9.5  Score=42.54  Aligned_cols=151  Identities=15%  Similarity=0.198  Sum_probs=86.4

Q ss_pred             EECCCcEEEEeCCCCCCccceEeecCCeEEEEe--------CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE
Q 010769          328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAW--------DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       328 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~--------~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  399 (502)
                      .+.|+.+.+|+..+.......-.....|..|..        .|.=.+++++++ --.|.++-+.-.............++
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~  173 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFK  173 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccccccccee
Confidence            455889999999986655544455555555543        222233444443 33455554432211111100112244


Q ss_pred             EecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC----CCC-------C------------eeEEEEec-CCCCCEEEE
Q 010769          400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL----SNN-------Q------------PSCIASRN-PKAGAVFSV  455 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~----~~~-------~------------~~~~~~~~-~~~~~v~~~  455 (502)
                      +......|+++....+| +.+.+| .||.  +|.+    ..+       +            |. +..+. .+..+|..+
T Consensus       174 i~~dg~~V~~I~~t~nG-RIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi  248 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTENG-RIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQI  248 (1311)
T ss_pred             eecCCceEEEEEeccCC-cEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceee
Confidence            45556778999877766 666555 4554  4432    111       0            11 22223 566789999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          456 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       456 ~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      ....... ++.+-+..|+|.+|++..+-..
T Consensus       249 ~ID~SR~-IlY~lsek~~v~~Y~i~~~G~~  277 (1311)
T KOG1900|consen  249 TIDNSRN-ILYVLSEKGTVSAYDIGGNGLG  277 (1311)
T ss_pred             Eeccccc-eeeeeccCceEEEEEccCCCcc
Confidence            9988776 7888999999999999874443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.17  E-value=38  Score=37.02  Aligned_cols=120  Identities=18%  Similarity=0.200  Sum_probs=75.0

Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-ecCC----------CCeeEEEEcCCCCCEEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHD----------KAVCTISYNPLVPNLLA  421 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~----------~~v~~l~~sp~~~~~l~  421 (502)
                      .+...|+|+|.....|++....|...+|++.......     .....+ ..+.          ..-..+.|.++. ..|+
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lL  219 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRK-----SSNLRLSRNISGSIIFDPEELSNWKRILWVSDS-NRLL  219 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccC-----CcceeeccCCCccccCCCcccCcceeeEecCCC-CEEE
Confidence            4577899999888899999999999999992221100     111111 1111          233478898876 5566


Q ss_pred             EEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC-cEEEEEeCCCcEEEEECCC
Q 010769          422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~llasg~~dg~i~vwd~~~  481 (502)
                      .++. ..+.++|+.+...............|..+.-+|..+ ++++.  ....|...++..
T Consensus       220 v~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~  277 (765)
T PF10214_consen  220 VCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS  277 (765)
T ss_pred             EEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence            6654 458999999876423222233456788888888722 22332  224688888877

These proteins are found in fungi.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.70  E-value=14  Score=35.44  Aligned_cols=102  Identities=6%  Similarity=0.025  Sum_probs=47.1

Q ss_pred             CcEEEEEecC-----CcEEEEECCCCee---eEEeccCCCC--eEEEEEcCCCCcEEEEEECC-----CcEEEEeCCCCC
Q 010769          279 RNILASASAD-----KQVKIWDVAAGKC---NLTLEHHTDK--VQAVAWNHHSPQILLSGSFD-----RSVVMKDARIST  343 (502)
Q Consensus       279 ~~~l~sgs~D-----g~v~vwd~~~~~~---~~~~~~h~~~--v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~  343 (502)
                      ..+++.|+.+     ..+..+|+.+.+.   ...+..-..+  -.+++.. .+ .+++.|+..     ..+..||+.+.+
T Consensus        73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCCC
Confidence            3466667654     3566777766543   1222111111  1122222 23 677777642     357788877543


Q ss_pred             Cccce-Eee--cCCeEEEEeCCCCCCEEEEEeCCCe----EEEEECCCC
Q 010769          344 HSGFK-WAV--AADVESLAWDPHAEHSFVVSLEDGT----IKGFDIRTA  385 (502)
Q Consensus       344 ~~~~~-~~~--~~~v~~v~~~p~~~~~l~~~~~dg~----i~i~d~~~~  385 (502)
                      =.... ...  .....++..   +..+++.|+.++.    +.+||..+.
T Consensus       151 W~~~~~~p~~~r~~~~~~~~---~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKL---QNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             eeECCCCCCCCCCcceEEEE---CCEEEEEcCCCCccccceEEEecCCC
Confidence            21110 000  111112222   2346777765542    467887764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=88.53  E-value=27  Score=37.96  Aligned_cols=69  Identities=16%  Similarity=0.021  Sum_probs=48.0

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe----c-----------c----CCCCeEEEEEcCCCCcEE
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL----E-----------H----HTDKVQAVAWNHHSPQIL  325 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~----~-----------~----h~~~v~~l~~~~~~~~~l  325 (502)
                      ....|.++....- +.+++.+-.||+|.++|-.+.+.+...    .           +    +-..+..++|+|.+ ..+
T Consensus       258 ~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~-c~~  335 (753)
T PF11635_consen  258 LNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM-CSL  335 (753)
T ss_pred             cCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-ceE
Confidence            3466888887766 558999999999999997766443322    0           0    11234457899998 777


Q ss_pred             EEEECCCcEE
Q 010769          326 LSGSFDRSVV  335 (502)
Q Consensus       326 ~s~~~dg~i~  335 (502)
                      +.-..+|.+.
T Consensus       336 v~~~~~~~~~  345 (753)
T PF11635_consen  336 VQIDEDGKTK  345 (753)
T ss_pred             EEEecCCCce
Confidence            7778888755

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.27  E-value=4.2  Score=35.04  Aligned_cols=31  Identities=19%  Similarity=0.426  Sum_probs=26.2

Q ss_pred             cceeeEEecCCC-----CcEEEEEecCCcEEEEECC
Q 010769          267 DSVLGLAWNKEF-----RNILASASADKQVKIWDVA  297 (502)
Q Consensus       267 ~~V~~l~~~~~~-----~~~l~sgs~Dg~v~vwd~~  297 (502)
                      ..|..++|||.|     +.+||+...++.|.||...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            379999999953     5689999999999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.25  E-value=3  Score=37.50  Aligned_cols=79  Identities=14%  Similarity=0.167  Sum_probs=47.8

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      ..+++|++-+.+|.+++||+.....+.+...+...-.            ... ..-......|..+.++.+|. -|++-+
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~------------~~~-~~~~~~~~~i~~~~lt~~G~-PiV~ls   85 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLN------------SSP-VSDKSSSPNITSCSLTSNGV-PIVTLS   85 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhc------------ccc-cccCCCCCcEEEEEEcCCCC-EEEEEe
Confidence            3688999999999999999987655443211100000            000 00004567788888987744 454444


Q ss_pred             cCCcEEEEECCCCe
Q 010769          287 ADKQVKIWDVAAGK  300 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~  300 (502)
                       +|....|+..-+.
T Consensus        86 -ng~~y~y~~~L~~   98 (219)
T PF07569_consen   86 -NGDSYSYSPDLGC   98 (219)
T ss_pred             -CCCEEEeccccce
Confidence             4788888865443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar

Probab=88.21  E-value=0.24  Score=53.80  Aligned_cols=15  Identities=0%  Similarity=0.091  Sum_probs=9.5

Q ss_pred             CCCCHHHHHHHHHccc
Q 010769           21 EPPSKEEIEEIINSGA   36 (502)
Q Consensus        21 ~~~~~~~~~~~~~~~~   36 (502)
                      .+ +++.|+.|+.-+.
T Consensus       619 ~~-t~~~l~~ll~vl~  633 (784)
T PF04931_consen  619 HL-TESGLQLLLDVLD  633 (784)
T ss_pred             hc-CHHHHHHHHHHhc
Confidence            35 6777777665553

The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=88.14  E-value=11  Score=39.40  Aligned_cols=34  Identities=12%  Similarity=0.212  Sum_probs=27.8

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES  174 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~  174 (502)
                      .++.+.+++-+|.+..++.|+.++   ++.+|.|...
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~---si~lfn~~~r   46 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDG---SIILFNFIPR   46 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCC---cEEEEeeccc
Confidence            456789999999999999999997   5677777544

>PLN02193 nitrile-specifier protein

Probab=87.91  E-value=34  Score=34.92  Aligned_cols=102  Identities=8%  Similarity=0.062  Sum_probs=48.3

Q ss_pred             CcEEEEEecC-----CcEEEEECCCCeeeEEecc----CCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEeCCCCCC
Q 010769          279 RNILASASAD-----KQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTH  344 (502)
Q Consensus       279 ~~~l~sgs~D-----g~v~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~  344 (502)
                      ..+++.|+.+     ..+.+||+.+.+-...-..    ....-.++.. -.+ .+++.|+.++     .+..||+.+.+-
T Consensus       229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEE-NVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECC-EEEEECCCCCCCCcceEEEEECCCCEE
Confidence            3466666654     3588889887654321110    1111112222 223 6777777654     356677665321


Q ss_pred             ccce-----EeecCCeEEEEeCCCCCCEEEEEeCC----CeEEEEECCCC
Q 010769          345 SGFK-----WAVAADVESLAWDPHAEHSFVVSLED----GTIKGFDIRTA  385 (502)
Q Consensus       345 ~~~~-----~~~~~~v~~v~~~p~~~~~l~~~~~d----g~i~i~d~~~~  385 (502)
                      ....     .........+.+  . ..+++.++.+    ..+.+||+.+.
T Consensus       307 ~~~~~~~~~~~~R~~~~~~~~--~-gkiyviGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        307 FHCSTPGDSFSIRGGAGLEVV--Q-GKVWVVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             EeCCCCCCCCCCCCCcEEEEE--C-CcEEEEECCCCCccCceEEEECCCC
Confidence            1000     000111122222  2 3366666654    45888998765

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=86.70  E-value=45  Score=35.08  Aligned_cols=167  Identities=14%  Similarity=0.098  Sum_probs=86.1

Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc---ceEeecCCeEEEEeCC-----CCCCEEEEEeC-C---Ce
Q 010769          309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAWDP-----HAEHSFVVSLE-D---GT  376 (502)
Q Consensus       309 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~v~~~p-----~~~~~l~~~~~-d---g~  376 (502)
                      ..+|..+.+.+++ ..+++...+|.|.+||........   ....+...+.--+|-+     .+..++++-+. .   -.
T Consensus       129 ~~kvv~Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  129 DDKVVGIKFSSDG-KIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             ccceEEEEEecCC-CEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence            6789999999888 889999999999999993222111   0111111111112222     12234443332 2   24


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEe---cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC----
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA----  449 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~----  449 (502)
                      .+++.+...        ...+..+.   .+........|+-+. +.|+.- .++.|.+|++...+......+..-.    
T Consensus       208 ykL~~l~~~--------~~~~~El~s~~~e~~~~~~s~f~Y~~-G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~  277 (670)
T PF10395_consen  208 YKLISLSNE--------SSSIFELSSTILENFGLEDSKFCYQF-GKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKES  277 (670)
T ss_pred             EEEEEeccC--------CcceEEeehheeccCCcccceEEEeC-CEEEEE-eCCEEEEEEcCCceEEEEEEechhhcccc
Confidence            677777222        13333332   222222223333222 333333 6778999999887644444443111    


Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       450 ~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ..+.++.--...+ +|.  +.++.|++.|+.-...+.++-
T Consensus       278 ~~~vSl~~~s~nR-vLL--s~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  278 DDLVSLKPPSPNR-VLL--SVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             ccceEeecCCCCe-EEE--EcCCEEEEEeehhhhhhhhhh
Confidence            1233443322233 455  346689999997666554433

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=86.66  E-value=34  Score=33.59  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=31.3

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCC-------Ceee-EEecc----CCCCeEEEEEcCCCCcEEEEEE
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAA-------GKCN-LTLEH----HTDKVQAVAWNHHSPQILLSGS  329 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~-------~~~~-~~~~~----h~~~v~~l~~~~~~~~~l~s~~  329 (502)
                      ...+.|++.++ + +++ ++.....++.+...       .+.+ ..+..    +......+.|.|+| .+.++-+
T Consensus        72 ~~p~Gi~~~~~-G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G  142 (367)
T TIGR02604        72 SMVTGLAVAVG-G-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG  142 (367)
T ss_pred             CCccceeEecC-C-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence            34678888887 4 444 44444333445431       1112 22322    12347789999998 5555444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.40  E-value=6.4  Score=33.90  Aligned_cols=32  Identities=22%  Similarity=0.382  Sum_probs=26.1

Q ss_pred             CCeEEEEeCCCC-----CCEEEEEeCCCeEEEEECCC
Q 010769          353 ADVESLAWDPHA-----EHSFVVSLEDGTIKGFDIRT  384 (502)
Q Consensus       353 ~~v~~v~~~p~~-----~~~l~~~~~dg~i~i~d~~~  384 (502)
                      ..+.+++|+|.|     ..+|++.+.+|.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999943     45788899999999997654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.07  E-value=30  Score=32.45  Aligned_cols=225  Identities=12%  Similarity=0.132  Sum_probs=116.9

Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCC---CCceeee-CCcchhhhhhccccCCccccccccCCcccceeeEEecCCC
Q 010769          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDE---VQPHVIL-GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  278 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~---~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  278 (502)
                      ++++|.+.+-++....+...+||.+....   ..++.+. ...                   .-..-....+.+.|+...
T Consensus        28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~-------------------~~~~~~~~PTGiVfN~~~   88 (336)
T TIGR03118        28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP-------------------PPLAAEGTPTGQVFNGSD   88 (336)
T ss_pred             eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC-------------------CCCCCCCCccEEEEeCCC
Confidence            34478888888888889999999862110   0111110 000                   000122456667776431


Q ss_pred             -----------CcEEEEEecCCcEEEEECCCCee-----eEEec-cCCCCe-EEEEEc--CCCCcEEEEEECCCcEEEEe
Q 010769          279 -----------RNILASASADKQVKIWDVAAGKC-----NLTLE-HHTDKV-QAVAWN--HHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       279 -----------~~~l~sgs~Dg~v~vwd~~~~~~-----~~~~~-~h~~~v-~~l~~~--~~~~~~l~s~~~dg~i~vwd  338 (502)
                                 ...++.++.||+|.-|...-+..     ...+. .....| ..+++.  ..+..+.++--..++|.+||
T Consensus        89 ~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd  168 (336)
T TIGR03118        89 TFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK  168 (336)
T ss_pred             ceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence                       12467889999999998543221     12222 112333 234443  33434455555689999998


Q ss_pred             CCCCCCccc-eE---------------eecCC--eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE
Q 010769          339 ARISTHSGF-KW---------------AVAAD--VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL  400 (502)
Q Consensus       339 ~~~~~~~~~-~~---------------~~~~~--v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  400 (502)
                      -.-...... .+               ...+.  |+-..-.+.. +.=+.|..-|.|-+||+.-          ..++++
T Consensus       169 ~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G----------~l~~r~  237 (336)
T TIGR03118       169 GSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNG----------QLLRRV  237 (336)
T ss_pred             CccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCC----------cEEEEe
Confidence            653321110 00               00000  1111112222 1234445567899999874          445555


Q ss_pred             e--cCCCCeeEEEEcCC-----CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC------CCCEEEEEEcC
Q 010769          401 H--AHDKAVCTISYNPL-----VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK------AGAVFSVAFSE  459 (502)
Q Consensus       401 ~--~h~~~v~~l~~sp~-----~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~------~~~v~~~~~sp  459 (502)
                      .  +.-..-+.|+..|-     ...+|+---.||+|..||..+++.  +-.+...      ...++.++|-.
T Consensus       238 as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~--~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       238 ASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ--LGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             ccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce--eeeecCCCCCeEEecCeEEeeeCC
Confidence            2  22234466776552     225666655699999999988763  2222221      12467888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.96  E-value=17  Score=40.75  Aligned_cols=32  Identities=19%  Similarity=0.349  Sum_probs=25.8

Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~  298 (502)
                      ......++|.|. .+++|.|...|.|+++-...
T Consensus        35 ~~~~~~~afD~~-q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   35 PSTPSALAFDPT-QGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCcceeeccc-cceEEEEEecccEEEecccc
Confidence            345667788888 67999999999999997543

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=85.94  E-value=32  Score=32.67  Aligned_cols=242  Identities=15%  Similarity=0.068  Sum_probs=112.7

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      +++|+.|+.+|...+. +.... ..+                          ....+...|+++...+...-+++.++..
T Consensus        13 ~~~lL~GTe~Gly~~~-~~~~~-~~~--------------------------~kl~~~~~v~q~~v~~~~~lLi~Lsgk~   64 (302)
T smart00036       13 GKWLLVGTEEGLYVLN-ISDQP-GTL--------------------------EKLIGRRSVTQIWVLEENNVLLMISGKK   64 (302)
T ss_pred             CcEEEEEeCCceEEEE-cccCC-CCe--------------------------EEecCcCceEEEEEEhhhCEEEEEeCCc
Confidence            4799999999876554 54211 011                          1113567899999998844333334444


Q ss_pred             CcEEEEECCCCee---------------eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC--CCccce---
Q 010769          289 KQVKIWDVAAGKC---------------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFK---  348 (502)
Q Consensus       289 g~v~vwd~~~~~~---------------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~---  348 (502)
                      ..++++++..-..               ....-.|......+.........++++....+|.++.....  +.....   
T Consensus        65 ~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~  144 (302)
T smart00036       65 PQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKF  144 (302)
T ss_pred             ceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccc
Confidence            4599999842221               01112344434444444322245556666777777654332  111110   


Q ss_pred             ---EeecCCeEEEEeCCC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-CCeeEEEEcCCCCCEEEEE
Q 010769          349 ---WAVAADVESLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       349 ---~~~~~~v~~v~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~  423 (502)
                         .....++..+..+++ ....+.+|+..+...++++.........  ....+...... .++..+.+.. + .+|++ 
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d--~sl~~~~~~~~~~p~~i~~l~~-~-e~Llc-  219 (302)
T smart00036      145 LFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED--LSLPFLSEETSLKPISVVQVPR-D-EFLLC-  219 (302)
T ss_pred             cccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc--ccccccccccccCceEEEEECC-C-eEEEE-
Confidence               011122333322332 1235666766433344444321000000  00000111111 4555555443 3 44443 


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      - +....+-|....+......+. -.+...++++..  +|+++. + +..|.|+++.++..++.+-
T Consensus       220 ~-~~~~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~~--pyll~~-~-~~~ievr~l~~~~l~q~i~  279 (302)
T smart00036      220 Y-DEFGVFVNLYGKRRSRNPILH-WEFMPESFAYHS--PYLLAF-H-DNGIEIRSIKTGELLQELA  279 (302)
T ss_pred             E-CcEEEEEeCCCCccccceEEE-cCCcccEEEEEC--CEEEEE-c-CCcEEEEECCCCceEEEEe
Confidence            3 333555555531211111121 124456777763  666665 3 4569999999998765543

Unpublished observations.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=85.41  E-value=60  Score=35.30  Aligned_cols=64  Identities=11%  Similarity=0.080  Sum_probs=42.0

Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEeccCCCCeE-------------EEEEcC--CCCcEEEEEEC----------CCcE
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-------------AVAWNH--HSPQILLSGSF----------DRSV  334 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-------------~l~~~~--~~~~~l~s~~~----------dg~i  334 (502)
                      ..++.++.|+.|.-.|..+|+.+..|.. .+.|.             .+.-.|  .+ ..+++|+.          +|.|
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEE
Confidence            3788889999999999999998877642 22210             011111  02 35666643          6889


Q ss_pred             EEEeCCCCCCc
Q 010769          335 VMKDARISTHS  345 (502)
Q Consensus       335 ~vwd~~~~~~~  345 (502)
                      +-+|.++++..
T Consensus       339 ~A~Da~TGkl~  349 (764)
T TIGR03074       339 RAFDVNTGALV  349 (764)
T ss_pred             EEEECCCCcEe
Confidence            99999988754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.67  E-value=28  Score=30.87  Aligned_cols=101  Identities=13%  Similarity=0.153  Sum_probs=62.9

Q ss_pred             EEEEEecCCcEEEEECC--CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC------cEEEE-eCCCC----CCcc-
Q 010769          281 ILASASADKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMK-DARIS----THSG-  346 (502)
Q Consensus       281 ~l~sgs~Dg~v~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg------~i~vw-d~~~~----~~~~-  346 (502)
                      .|+.+...+.|.+|++.  ..+...+|.. -+.|..+.++..| .+|+|--.+.      .+|+| +.+..    .... 
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            45444666789999998  3456677764 3789999999999 7888764322      45554 22211    1100 


Q ss_pred             ---------------------ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCC
Q 010769          347 ---------------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       347 ---------------------~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~  385 (502)
                                           ........+.+++..|..++ +++|+ ++.+.+|.+...
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEE
Confidence                                 01122446778888887664 55554 567888887654

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=84.62  E-value=52  Score=33.91  Aligned_cols=107  Identities=18%  Similarity=0.227  Sum_probs=57.8

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      ....++.+..+|.++...+.....       .......+. ....+++.+...++.+|+.||.-|.=.++.+.......+
T Consensus       221 ~~~~~lL~~e~G~l~~l~l~~~~~-------~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~  293 (504)
T PF10433_consen  221 DGDRILLQDEDGDLYLLTLDNDGG-------SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVL  293 (504)
T ss_dssp             TSSEEEEEETTSEEEEEEEEEEEE-------EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEEEECCC-------eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEE
Confidence            455899999999999888775410       111222222 455677777764334888888755544444444444445


Q ss_pred             EEecCCCCCEEEEEEcCC----CC------cEEEEEe--CCCcEEEEE
Q 010769          443 ASRNPKAGAVFSVAFSED----SP------FVLAIGG--SKGKLEIWD  478 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd----~~------~llasg~--~dg~i~vwd  478 (502)
                      ..+. .-+||..+++.+.    ..      .+++++|  .+|.+++..
T Consensus       294 ~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr  340 (504)
T PF10433_consen  294 DSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR  340 (504)
T ss_dssp             EEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred             Eecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence            4444 5688998888532    11      3566655  356777764

...

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.42  E-value=45  Score=33.05  Aligned_cols=116  Identities=9%  Similarity=0.173  Sum_probs=70.6

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeE----EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL----TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  340 (502)
                      ..++|.++.|+++ ...||.--.+++|.+++....+...    +-+..+..|....|....  -++..+..| +-+|-+.
T Consensus        65 d~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen   65 DKGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVL  140 (657)
T ss_pred             CCCceeEEEeccC-cceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEc
Confidence            4569999999999 6699999999999999974333222    223345568899998764  344444333 5555544


Q ss_pred             CCCC-ccceEeecCCeEEEEeCCCCCCEEEEEe-CCCeEEEEECCC
Q 010769          341 ISTH-SGFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRT  384 (502)
Q Consensus       341 ~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~i~d~~~  384 (502)
                      .... ......+...|.-..|.+...-.+++.+ ..+++.=+-+++
T Consensus       141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            3222 2223355667777888887654444444 333333344433

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=84.32  E-value=28  Score=30.64  Aligned_cols=103  Identities=16%  Similarity=0.128  Sum_probs=59.3

Q ss_pred             CcEEEEEecC--CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeE
Q 010769          279 RNILASASAD--KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVE  356 (502)
Q Consensus       279 ~~~l~sgs~D--g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  356 (502)
                      ++++.+.+.-  ..|++||+.+++.+.+-.-....+..=-...-+..+..-.-.+|....+|.++.+... .+...+.-.
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg-~~~y~GeGW  134 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG-RFSYEGEGW  134 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc-ccccCCcce
Confidence            4567666553  3699999999988766543222222111112232444455668888889988776654 344445555


Q ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEECCCC
Q 010769          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~  385 (502)
                      .++-.  +.+ ++.+....+++.-|..+.
T Consensus       135 gLt~d--~~~-LimsdGsatL~frdP~tf  160 (262)
T COG3823         135 GLTSD--DKN-LIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             eeecC--Ccc-eEeeCCceEEEecCHHHh
Confidence            55443  343 555555666776666554

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.25  E-value=22  Score=39.80  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.9

Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          413 NPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       413 sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ++.+ ..++++..||.+.+||...++
T Consensus       243 ~~~~-~~~v~~h~Dgs~~fWd~s~g~  267 (993)
T KOG1983|consen  243 SRDG-SHFVSYHTDGSYAFWDVSSGK  267 (993)
T ss_pred             ccCC-ceEEEEEecCCEEeeecCCCc
Confidence            6666 899999999999999998864

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.24  E-value=19  Score=36.17  Aligned_cols=97  Identities=12%  Similarity=0.107  Sum_probs=53.2

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      -.-.|..+..++.|. .++-.+.+|.+.++=.+..-.-..+......|+|-.+.-.. . |++.+               
T Consensus       102 V~feV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~-~ftss---------------  163 (741)
T KOG4460|consen  102 VLFEVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-R-FFTSS---------------  163 (741)
T ss_pred             ceEEEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-e-eeccC---------------
Confidence            345688888999965 55566666766554333222223333333334444443222 2 22221               


Q ss_pred             ccceEeecCCeEEEEeCCCC--CCEEEEEeCCCeEEEEECCCC
Q 010769          345 SGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~dg~i~i~d~~~~  385 (502)
                            ..-.+..++|+|++  ...++.-+.|..|++|++...
T Consensus       164 ------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  164 ------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             ------CceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence                  01124456788875  456777777888888887765

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.50  E-value=5.4  Score=24.54  Aligned_cols=32  Identities=19%  Similarity=0.215  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEecCCcEEEEECCCCeeeEEecc
Q 010769          276 KEFRNILASASADKQVKIWDVAAGKCNLTLEH  307 (502)
Q Consensus       276 ~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~  307 (502)
                      |+++.++++...+++|.++|+.+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            44454566666788999999998888877754

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.39  E-value=36  Score=38.27  Aligned_cols=148  Identities=15%  Similarity=0.198  Sum_probs=83.1

Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEc-CCCC------cEEEEEECCCcEEEEeCCC----CCCcc----ceEe
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-HHSP------QILLSGSFDRSVVMKDARI----STHSG----FKWA  350 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~------~~l~s~~~dg~i~vwd~~~----~~~~~----~~~~  350 (502)
                      +.|+.+.+|+.+++.....+.+.+..|..+..- |.-+      ++++..+.--.|.++-+.-    .....    ....
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            568899999999987777777666667666542 2110      2233333334455543321    11111    1111


Q ss_pred             e-cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCC---------CCC----CCCCccEEEe-cCCCCeeEEEEcCC
Q 010769          351 V-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD---------PDS----TSQQSSFTLH-AHDKAVCTISYNPL  415 (502)
Q Consensus       351 ~-~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---------~~~----~~~~~~~~~~-~h~~~v~~l~~sp~  415 (502)
                      . +..|.|+....+|. .|+ ++.||.|+-+-.......         ...    .-...+..+. .+..+|..+.+...
T Consensus       176 ~dg~~V~~I~~t~nGR-IF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGR-IFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             cCCceEEEEEeccCCc-EEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            2 44588888665554 444 455664443222211110         000    0001122333 56779999999886


Q ss_pred             CCCEEEEEeCCCcEEEEECCC
Q 010769          416 VPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      . ++|.+-+..|+|.+|++..
T Consensus       254 R-~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  254 R-NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             c-ceeeeeccCceEEEEEccC
Confidence            5 8999999999999999987

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=83.23  E-value=51  Score=36.83  Aligned_cols=170  Identities=15%  Similarity=0.142  Sum_probs=86.1

Q ss_pred             CcceeeeecCCCCCC--CCCCEEEEecC---------CCcEEEeeCCCC--CCCCceeeeCCcchhhhhhccccCCcccc
Q 010769          192 FPLCMAWLDCPLKDR--EKGNFMAVGSM---------EPAIEIWDLDVI--DEVQPHVILGGIDEEKKKKKSKKGKKSSI  258 (502)
Q Consensus       192 ~~~~~~w~~~~~~~s--~~~~~la~g~~---------dg~I~iwdl~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  258 (502)
                      .++++..+.......  ....|||+|+.         -|.+.|+++-..  +.-.|.                 .+.+-+
T Consensus      1027 ~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~-----------------t~~KlK 1089 (1366)
T KOG1896|consen 1027 HVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF-----------------TKNKLK 1089 (1366)
T ss_pred             eeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc-----------------ccceee
Confidence            345555544333222  22568998864         288999987321  111110                 111111


Q ss_pred             ccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769          259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  338 (502)
                      .......+++|..++=-.  + +|++|.. ..|.||+++...-+.-+..-.-++.-.....-. ++|+.|.--..|.+.-
T Consensus      1090 el~~eE~KGtVsavceV~--G-~l~~~~G-qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vk-nlIl~gDV~ksisfl~ 1164 (1366)
T KOG1896|consen 1090 ELYIEEQKGTVSAVCEVR--G-HLLSSQG-QKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVK-NLILAGDVMKSISFLG 1164 (1366)
T ss_pred             eeehhhcccceEEEEEec--c-EEEEccC-cEEEEEEeccCCcceeeEEeccceeEEehhhhh-hheehhhhhhceEEEE
Confidence            222233456777776432  3 4555443 579999994332211111111222222222223 5677777667777666


Q ss_pred             CCCCCCccceEe---ecCCeEEEEeCCCCCC-EEEEEeCCCeEEEEECC
Q 010769          339 ARISTHSGFKWA---VAADVESLAWDPHAEH-SFVVSLEDGTIKGFDIR  383 (502)
Q Consensus       339 ~~~~~~~~~~~~---~~~~v~~v~~~p~~~~-~l~~~~~dg~i~i~d~~  383 (502)
                      ............   ..-.+.++.|--+|.+ .|+++..+++|++|-..
T Consensus      1165 fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1165 FQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred             EccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence            554332222221   1224667777665554 57788889999888654

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=83.11  E-value=38  Score=31.12  Aligned_cols=73  Identities=7%  Similarity=0.038  Sum_probs=44.5

Q ss_pred             CCCeeEEEEcC------CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE-EEcCCCCcEEEEEeCCCcEEE
Q 010769          404 DKAVCTISYNP------LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV-AFSEDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       404 ~~~v~~l~~sp------~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~spd~~~llasg~~dg~i~v  476 (502)
                      ...|+|++--.      +....|+.|...|.|.|.|...........+..-...|... .|. ...|.|+.++.||.|++
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~d-evdyRI~Va~Rdg~iy~  254 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYD-EVDYRIVVACRDGKIYT  254 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeee-ccceEEEEEeCCCEEEE
Confidence            34577775432      34578999999999999998877633333333221111111 222 14456888899998876


Q ss_pred             E
Q 010769          477 W  477 (502)
Q Consensus       477 w  477 (502)
                      -
T Consensus       255 i  255 (257)
T PF14779_consen  255 I  255 (257)
T ss_pred             E
Confidence            4

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=82.92  E-value=47  Score=32.07  Aligned_cols=57  Identities=18%  Similarity=0.178  Sum_probs=33.0

Q ss_pred             EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE-EecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      +|++....+.|....+.....      ...... +......+..+++.|+| .++++...+|.|.
T Consensus       273 ~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~r~~~v~~~pDG-~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  273 LFVADYGGGRIWRLDLDEDGS------VTEEEEFLGGFGGRPRDVAQGPDG-ALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEETTTTEEEEEEEETTEE------EEEEEEECTTSSS-EEEEEEETTS-EEEEEE-TTTTEE
T ss_pred             EEEecCCCCEEEEEeeecCCC------ccceEEccccCCCCceEEEEcCCC-eEEEEECCCCeEe
Confidence            555555567788777764410      001111 12344478999999998 7777766777764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.12  E-value=3.7  Score=43.73  Aligned_cols=77  Identities=19%  Similarity=0.191  Sum_probs=44.9

Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcC--------------CCCcEEEEEeCC
Q 010769          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE--------------DSPFVLAIGGSK  471 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp--------------d~~~llasg~~d  471 (502)
                      .-..++.+|.| ++.|+...=|.|.+.|+.......+  ..+...  .++.|-+              -..++++-+-..
T Consensus       323 ~ge~lslSP~g-tlAAVTD~lgRVlLlDta~~ivvr~--wKGYRD--Asc~fv~vkek~~~s~~~~sRvAlFLvIyAPRr  397 (1244)
T KOG2727|consen  323 KGEKLSLSPSG-TLAAVTDSLGRVLLLDTAALIVVRL--WKGYRD--ASCVFVEVKEKKGKSEPVKSRVALFLVIYAPRR  397 (1244)
T ss_pred             ccceeeeCCCc-cEEEEecccCcEEEEehhhhhHHHH--hccccc--ceeEEEEcccccCCCccCcCceeEEEEEecccc
Confidence            34567889987 7777777778888988866532111  111111  1122211              012344555667


Q ss_pred             CcEEEEECCCCccccc
Q 010769          472 GKLEIWDTLSDAGISN  487 (502)
Q Consensus       472 g~i~vwd~~~~~~~~~  487 (502)
                      |.+-||.+.+|..+..
T Consensus       398 giLEVW~~q~gpRV~A  413 (1244)
T KOG2727|consen  398 GILEVWQMQTGPRVLA  413 (1244)
T ss_pred             cHHHHHHhccCCeEEE
Confidence            8888888888877643

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=81.28  E-value=57  Score=31.96  Aligned_cols=196  Identities=14%  Similarity=0.131  Sum_probs=105.0

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCc---ccceeeEEecCCCCcE-E
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH---TDSVLGLAWNKEFRNI-L  282 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~-l  282 (502)
                      |...+|+.....+-+.+||++... ++.                          ...+.   -+-...+.+.  ++.. |
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~-lq~--------------------------~~~Gr~NNVDvrygf~l~--g~~vDl  116 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKE-LQS--------------------------LPVGRPNNVDVRYGFPLN--GKTVDL  116 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-E-EEE--------------------------E-SS-EEEEEEEEEEEET--TEEEEE
T ss_pred             cccceEEEEeCCCCEEEEcCCCcE-EEe--------------------------ecCCCcceeeeecceecC--CceEEE
Confidence            456677777788899999997421 110                          00111   1222333332  2222 4


Q ss_pred             EEEec-C---CcEEEEECC--CCeeeEEecc-------CCCCeEEEEE--cC-CCCcEEEEEECCCcEEEEeCCCC-C--
Q 010769          283 ASASA-D---KQVKIWDVA--AGKCNLTLEH-------HTDKVQAVAW--NH-HSPQILLSGSFDRSVVMKDARIS-T--  343 (502)
Q Consensus       283 ~sgs~-D---g~v~vwd~~--~~~~~~~~~~-------h~~~v~~l~~--~~-~~~~~l~s~~~dg~i~vwd~~~~-~--  343 (502)
                      +.++. +   .+|++|.+.  ++. +..+..       ....+..+|+  ++ .+..+++....+|.+.-|-+... .  
T Consensus       117 avas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~  195 (381)
T PF02333_consen  117 AVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK  195 (381)
T ss_dssp             EEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS
T ss_pred             EEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc
Confidence            44443 2   469999775  343 333321       1123566665  34 34457778889999888877532 1  


Q ss_pred             C---ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec--CCCCeeEEEEc--CCC
Q 010769          344 H---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYN--PLV  416 (502)
Q Consensus       344 ~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~s--p~~  416 (502)
                      .   ....+...+.+..|....... .++++-++.-|.-|+........    ...+....+  ....|-.|++-  +++
T Consensus       196 v~~~lVR~f~~~sQ~EGCVVDDe~g-~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~g  270 (381)
T PF02333_consen  196 VSATLVREFKVGSQPEGCVVDDETG-RLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSDG  270 (381)
T ss_dssp             EEEEEEEEEE-SS-EEEEEEETTTT-EEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CCC
T ss_pred             EeeEEEEEecCCCcceEEEEecccC-CEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCCC
Confidence            1   223455677899999887654 79999999888888876442100    112222222  34567777764  344


Q ss_pred             CCEEEEEe-CCCcEEEEECCCC
Q 010769          417 PNLLATGS-TDKMVKLWDLSNN  437 (502)
Q Consensus       417 ~~~l~t~s-~dg~i~vwd~~~~  437 (502)
                      ..+|++++ .+++..||+....
T Consensus       271 ~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  271 KGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             -EEEEEEEGGGTEEEEEESSTT
T ss_pred             CeEEEEEcCCCCeEEEEecCCC
Confidence            45555555 4778999998753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.27  E-value=47  Score=36.31  Aligned_cols=76  Identities=11%  Similarity=0.128  Sum_probs=42.6

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      -|+.|.+|+.+|.+.+|.+..............              .......  -+..+|.-|...+. ..++ -...
T Consensus        25 ~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~--------------~~~~~~~--~~kk~i~~l~~~~~-~~~l-l~l~   86 (877)
T KOG2063|consen   25 YGNHLYVGTRDGDLYLYSIYERGNPESVELVTE--------------TVKFEKE--FSKKPINKLLVCAS-LELL-LILS   86 (877)
T ss_pred             hCCEEEEEcCCCcEEEEeccccccccchhhhcc--------------hhHHhhh--hccchhHHHhhcch-hcch-heec
Confidence            489999999999999999864322111100000              0000001  12566777776665 2233 3345


Q ss_pred             CCcEEEEECCCCee
Q 010769          288 DKQVKIWDVAAGKC  301 (502)
Q Consensus       288 Dg~v~vwd~~~~~~  301 (502)
                      |+.|.++++.+-+.
T Consensus        87 dsqi~~~~l~~~~~  100 (877)
T KOG2063|consen   87 DSQIAVHKLPELEP  100 (877)
T ss_pred             CCcceeeecCcccc
Confidence            67788888766544

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=81.07  E-value=55  Score=31.67  Aligned_cols=20  Identities=15%  Similarity=0.278  Sum_probs=13.0

Q ss_pred             cEEEEEECC-----------CcEEEEeCCCC
Q 010769          323 QILLSGSFD-----------RSVVMKDARIS  342 (502)
Q Consensus       323 ~~l~s~~~d-----------g~i~vwd~~~~  342 (502)
                      .+.+.|+..           ..+..||..+.
T Consensus        65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~   95 (346)
T TIGR03547        65 KLYVFGGIGKANSEGSPQVFDDVYRYDPKKN   95 (346)
T ss_pred             EEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence            677777763           24667787654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=81.06  E-value=30  Score=34.12  Aligned_cols=20  Identities=15%  Similarity=0.358  Sum_probs=12.9

Q ss_pred             cEEEEEECCC-----------cEEEEeCCCC
Q 010769          323 QILLSGSFDR-----------SVVMKDARIS  342 (502)
Q Consensus       323 ~~l~s~~~dg-----------~i~vwd~~~~  342 (502)
                      .+++.|+...           .+..||..+.
T Consensus        86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n  116 (376)
T PRK14131         86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN  116 (376)
T ss_pred             EEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence            6777777542           3667787653

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=80.98  E-value=59  Score=31.94  Aligned_cols=183  Identities=15%  Similarity=0.117  Sum_probs=100.6

Q ss_pred             EEEEECCCCeeeEEecc--CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE-
Q 010769          291 VKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS-  367 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~-  367 (502)
                      |.|.| .....+..+++  ....|.++.|..+- -+++|--.-.-+.+.|+..++.+.......-+-.+--.+|-|.+. 
T Consensus       408 vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv-~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~  485 (603)
T COG4880         408 VYILD-ENLNVVGKLTGLAPGERIYAVRFVGDV-LYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRL  485 (603)
T ss_pred             eEEEc-CCCcEEEEEeccCCCceEEEEEEeCce-EEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCcE
Confidence            44444 33445555544  35688899998766 566666666678889999887766554444444444567766554 


Q ss_pred             EEEEeCCCe--EEEEECCCCCCCCCCCCCCccEEEecCCCC----eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769          368 FVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKA----VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       368 l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      +-+|..+|.  |.+||+........    ....++..-=++    -..+.|.|...-+++-+...|.  ++.+..+.  .
T Consensus       486 lGvG~~~g~vKiSLFdiSdl~~PkE----v~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~--k  557 (603)
T COG4880         486 LGVGAYQGGVKISLFDISDLAAPKE----VSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGS--K  557 (603)
T ss_pred             EEeecccCCceEEEEeccCCCCchh----hhheehhhhcchhhhccceeecCCcccEEEecccCccE--EEEEecCc--e
Confidence            446666675  56788876532110    001111100001    1234455544334444555555  44444442  3


Q ss_pred             EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       442 ~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +.....|...+...-|..|-  +...|+.  .+.++|-.+.+.+..
T Consensus       558 l~k~~e~k~na~RA~fi~dy--lY~vg~~--ev~~ldenswe~Vge  599 (603)
T COG4880         558 LRKRAERKLNADRAFFIKDY--LYLVGGN--EVWKLDENSWEVVGE  599 (603)
T ss_pred             eeehhhhcccceeeEEecce--EEEeccc--eeEEeccchHhhhhh
Confidence            44445566666667777664  4444544  477777666665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	502
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-12
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-12
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		3e-12
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-12
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		4e-12
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-11
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-09
2h9l_A	329	Wdr5delta23 Length = 329		3e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-08
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		9e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-08
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-07
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-07
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-07
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-04
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		1e-05
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		1e-05
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		1e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-05
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		5e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		6e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		7e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		8e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		8e-05
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		9e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		1e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-04
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		3e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-04

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 280 NILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS 329
           +I+A+ +    V ++D          +G+CN  L L  H  +   ++WN +    LLS S
Sbjct: 140 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS 199
Query: 330 FDRSVVM-------KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 382
            D +V +       K+ +I          +A VE +AW    E  F    +D  +  +D 
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT 259
Query: 383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442
           R+      +T+ + S  + AH   V  +S+NP    +LATGS DK V LWDL N +    
Sbjct: 260 RS------NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
              + K   +F V +S  +  +LA  G+  +L +WD
Sbjct: 314 TFESHK-DEIFQVHWSPHNETILASSGTDRRLNVWD 348

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 280 NILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS 329
           +I+A+ +    V ++D          +G+CN  L L  H  +   ++WN +    LLS S
Sbjct: 140 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS 199
Query: 330 FDRSVVM-------KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 382
            D +V +       K+ +I          +A VE +AW    E  F    +D  +  +D 
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT 259
Query: 383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442
           R+      +T+ + S  + AH   V  +S+NP    +LATGS DK V LWDL N +    
Sbjct: 260 RS------NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484
              + K   +F V +S  +  +LA  G+  +L +WD LS  G
Sbjct: 314 TFESHK-DEIFQVHWSPHNETILASSGTDRRLNVWD-LSKIG 353

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 298 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 348
           +G+C  +L L  H  +   ++WN +    LLS S D ++ +       K+ R+       
Sbjct: 172 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 231
Query: 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
               A VE +AW    E  F    +D  +  +D R      ++ + + S T+ AH   V 
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 285
Query: 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
            +S+NP    +LATGS DK V LWDL N +   + S       +F V +S  +  +LA  
Sbjct: 286 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 344
Query: 469 GSKGKLEIWD 478
           G+  +L +WD
Sbjct: 345 GTDRRLHVWD 354

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 298 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 348
           +G+C  +L L  H  +   ++WN +    LLS S D ++ +       K+ R+       
Sbjct: 170 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 229
Query: 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
               A VE +AW    E  F    +D  +  +D R      ++ + + S T+ AH   V 
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 283
Query: 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
            +S+NP    +LATGS DK V LWDL N +   + S       +F V +S  +  +LA  
Sbjct: 284 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 342
Query: 469 GSKGKLEIWD 478
           G+  +L +WD
Sbjct: 343 GTDRRLHVWD 352

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 298 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 348
           +G+C  +L L  H  +   ++WN +    LLS S D ++ +       K+ R+       
Sbjct: 168 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 227
Query: 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
               A VE +AW    E  F    +D  +  +D R      ++ + + S T+ AH   V 
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 281
Query: 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
            +S+NP    +LATGS DK V LWDL N +   + S       +F V +S  +  +LA  
Sbjct: 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 340
Query: 469 GSKGKLEIWDTLSDAG 484
           G+  +L +WD LS  G
Sbjct: 341 GTDRRLHVWD-LSKIG 355

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 281 ILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS- 329
           I+A+ +    V ++D          +G+CN  L L  H  +   ++WN +    LLS S 
Sbjct: 139 IIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASD 198
Query: 330 ------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
                 +D S V K+ ++           A VE ++W    E  F    +D  +  +D R
Sbjct: 199 DHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTR 258
Query: 384 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
           +      + + + S ++ AH   V  +S+NP    +LATGS DK V LWDL N +   + 
Sbjct: 259 S------NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-LH 311
Query: 444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           S       +F V +S  +  +LA  G+  +L +WD
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           HT SVL L +++    ++ + S+D  V++WDV  G+   TL HH + V  + +N+    +
Sbjct: 172 HTGSVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GM 225
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
           +++ S DRS+ + D    T    +  +     ++      +   V +  D TIK ++  T
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST 285
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
                     +   TL+ H + +  + Y      L+ +GS+D  ++LWD+     +C+  
Sbjct: 286 C---------EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG--ACLRV 331
Query: 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
                  V  + F  D+  +++ G   GK+++WD ++
Sbjct: 332 LEGHEELVRCIRF--DNKRIVS-GAYDGKIKVWDLVA 365

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 63  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 120
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 121 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 175
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 176 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 228
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 70  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 81  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 138
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 139 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 193
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 194 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 246
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 60  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 117
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 118 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 172
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 173 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 225
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 70  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 69  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 126
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 127 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 181
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 182 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 234
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 64  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 121
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 122 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 176
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 177 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 229
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 70  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 65  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 122
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 123 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 177
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 178 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 230
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 64  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 121
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 122 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 176
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 177 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 229
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 86  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 143
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 144 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 198
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 199 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 251
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 88  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 145
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 146 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 200
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 201 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 253
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   +  +AW+ +  N+L SAS DK +KIWDV++GKC  TL+ H++ V    +N  S  +
Sbjct: 67  HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
           ++SGSFD SV + D +  T    K   A      A   + + S +VS   DG  + +   
Sbjct: 125 IVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
                 D+ S Q   TL   D   V  + ++P    +LA  + D  +KLWD S       
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNDLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
                N+  CI +     G  + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 57/256 (22%)
Query: 271 GLAWNKEFR-NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS 329
           G  W+ + R NI+ S S D+ +K+W+   G+C  TL  HT  V+ +   H   + ++SGS
Sbjct: 160 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM---HLHEKRVVSGS 216
Query: 330 FDRSVVMKD----------------ARISTHSGFKWAVAA-DVESLAWDPHAE---HSF- 368
            D ++ + D                 R   + G +    A D     WDP  E   H+  
Sbjct: 217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 276
Query: 369 -----VVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412
                V SL+           D +I+ +D+ T       T  QS              S 
Sbjct: 277 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS------------LTSG 324
Query: 413 NPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
             L  N+L +G+ D  VK+WD+   Q    +   N    AV  + F+++  FV+      
Sbjct: 325 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVIT-SSDD 381
Query: 472 GKLEIWDTLSDAGISN 487
           G +++WD  +   I N
Sbjct: 382 GTVKLWDLKTGEFIRN 397

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 61/250 (24%)
Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDS 268
           GN +A  S + ++ +W++D  DE +   +L                          HT  
Sbjct: 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNS------------------------HTQD 152
Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHSPQILL 326
           V  + W+   + +LASAS D  VK++        C  TLE H   V ++A++  S Q L 
Sbjct: 153 VKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLA 210
Query: 327 SGSFDRSVVMKDAR-------------------ISTHSGFKWAVAADVESLAWDPHAEHS 367
           S S DR+V +                       I T SGF    +  +  +AW      +
Sbjct: 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH---SRTIYDIAW-CQLTGA 266
Query: 368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLAT 422
              +  D  I+ F     + DP+S  QQ +F+L      AH + V  +++NP  P LLA+
Sbjct: 267 LATACGDDAIRVF-----QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 423 GSTDKMVKLW 432
            S D  V  W
Sbjct: 322 CSDDGEVAFW 331

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 28/205 (13%)
Query: 265 HTDS-VLGLAWNKEFRNILASASADKQVKIWDVAAGK--CNLTL-EHHTDKVQAVAWNHH 320
           H DS    LAWN     +LAS   D++++IW        C   L E H   V+ VAW   
Sbjct: 14  HPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW--- 69
Query: 321 SP--QILLSGSFDRSVVMKDAR------ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 372
           SP    L S SFD +  +          ++T  G +     +V+S+AW P   +      
Sbjct: 70  SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE----NEVKSVAWAPSG-NLLATCS 124
Query: 373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432
            D ++  +++       +    +    L++H + V  + ++P    LLA+ S D  VKL+
Sbjct: 125 RDKSVWVWEV------DEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLY 177
Query: 433 DLSNNQPSCIASRNPKAGAVFSVAF 457
               +   C A+       V+S+AF
Sbjct: 178 REEEDDWVCCATLEGHESTVWSLAF 202

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 119/290 (41%), Gaps = 60/290 (20%)
Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDS 268
           G F+A G+ +  I IWD   I+  +  +IL G                        H   
Sbjct: 135 GKFLATGAEDRLIRIWD---IENRKIVMILQG------------------------HEQD 167
Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
           +  L +     + L S S D+ V+IWD+  G+C+LTL    D V  VA +    + + +G
Sbjct: 168 IYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAG 225
Query: 329 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF-VVSLEDG----------TI 377
           S DR+V + D+     +GF      D E+ +   H +  + VV   DG          ++
Sbjct: 226 SLDRAVRVWDS----ETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 378 KGFDIRTAKSDPDSTSQQSS---FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434
           K ++++ A +  DS +  S     T   H   V +++       +L+ GS D+ V  WD 
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS-GSKDRGVLFWDK 339
Query: 435 SNNQPSCI--ASRNPKAGAVFSVAFSEDSPF-----VLAIGGSKGKLEIW 477
            +  P  +    RN    +V SVA +  S       V A G    K  IW
Sbjct: 340 KSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCKARIW 385

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331
           +AW KE  N LA  ++  +V++WDV   K    +  H+ +V +++WN +   IL SGS  
Sbjct: 73  VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 128
Query: 332 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
             +   D R++ H     SG     + +V  L W P   H     L  G      +    
Sbjct: 129 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 178
Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 444
           S P         T   H  AV  +++ P   N+LAT  G++D+ +++W++ +   +C+++
Sbjct: 179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 236
Query: 445 RNPKAGAVFSVAFSED-SPFVLAIGGSKGKLEIW 477
            +  +  V S+ +S      +   G ++ +L IW
Sbjct: 237 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 269

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 65/255 (25%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
           +++ SAS D  +K+WD   G    TL+ HTD VQ ++++H S ++L S S D ++ + D 
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDF 179
Query: 340 R----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA---------- 385
           +    I T  G       +V S++  P+ +H  V +  D TIK ++++T           
Sbjct: 180 QGFECIRTMHGHD----HNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHR 234
Query: 386 ------KSDPDST-----------------SQQSSFTLHAHDKAVCTISYNPLVPN---- 418
                 + + D T                 +++    L  H   V  IS+ P        
Sbjct: 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Query: 419 ---------------LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 463
                           L +GS DK +K+WD+S     C+ +       V  V F     F
Sbjct: 295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKF 352
Query: 464 VLAIGGSKGKLEIWD 478
           +L+    K  L +WD
Sbjct: 353 ILSCADDK-TLRVWD 366

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331
           +AW KE  N LA  ++  +V++WDV   K    +  H+ +V +++WN +   IL SGS  
Sbjct: 164 VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 219
Query: 332 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
             +   D R++ H     SG     + +V  L W P   H     L  G      +    
Sbjct: 220 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 269
Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 444
           S P         T   H  AV  +++ P   N+LAT  G++D+ +++W++ +   +C+++
Sbjct: 270 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 327
Query: 445 RNPKAGAVFSVAFSED-SPFVLAIGGSKGKLEIW 477
            +  +  V S+ +S      +   G ++ +L IW
Sbjct: 328 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 360

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331
           +AW KE  N LA  ++  +V++WDV   K    +  H+ +V +++WN +   IL SGS  
Sbjct: 153 VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 208
Query: 332 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
             +   D R++ H     SG     + +V  L W P   H     L  G      +    
Sbjct: 209 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 258
Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 444
           S P         T   H  AV  +++ P   N+LAT  G++D+ +++W++ +   +C+++
Sbjct: 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 316
Query: 445 RNPKAGAVFSVAFSED-SPFVLAIGGSKGKLEIW 477
            +  +  V S+ +S      +   G ++ +L IW
Sbjct: 317 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 349

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 274 WNKEF-RNILASASADKQVKIWDVAAGKCNLTL------EHHTDKVQAVAWNHHSPQILL 326
           W+ +F + ILA+ S D+++K+  V+    + TL        H   +++VAW  H+  +L 
Sbjct: 18  WSFDFSQGILATGSTDRKIKL--VSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLA 74
Query: 327 SGSFDRSVVMKDARISTHSGFKWAVAA-------DVESLAWDPHAEHSFVVSLEDGTIKG 379
           +GSFD +V +     S    F+  + A       +V+ +AW     +    S +      
Sbjct: 75  AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS---- 130
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439
             +   ++D      +    L  H + V  + ++P    LLA+ S D  V++W   ++  
Sbjct: 131 --VWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW 187
Query: 440 SCIASRNPKAGAVFSVAFSE-DSPFVLAIGGSKGKLEIWDTLSD 482
            C+A  N   G V+S  F + +  F L  G     + +W  + D
Sbjct: 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 43/252 (17%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-------TLEHHTDKVQAVAW 317
           HT  VL +AW     N++AS S D  V +W++  G   L       TLE HT +V  VAW
Sbjct: 80  HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 318 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV------- 370
           +  +  +LLS   D  +++ D              A V +L  D H +  + V       
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDV----------GTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 371 ----SLEDGTIKGFDIR----TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 422
               S  D  ++  + R     A+ D      +    +   +  + T  ++ +       
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------- 242
Query: 423 GSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
             +++ V LWD  +  +P  +   +  +G +    F  D+  V   G     +  ++  S
Sbjct: 243 --SERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 482 DAGISNRFSKYS 493
           +A   +  S +S
Sbjct: 300 EAPFLHYLSMFS 311

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 43/252 (17%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-------TLEHHTDKVQAVAW 317
           HT  VL +AW     N++AS S D  V +W++  G   L       TLE HT +V  VAW
Sbjct: 80  HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 318 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV------- 370
           +  +  +LLS   D  +++ D              A V +L  D H +  + V       
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDV----------GTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 371 ----SLEDGTIKGFDIR----TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 422
               S  D  ++  + R     A+ D      +    +   +  + T  ++ +       
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------- 242
Query: 423 GSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
             +++ V LWD  +  +P  +   +  +G +    F  D+  V   G     +  ++  S
Sbjct: 243 --SERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 482 DAGISNRFSKYS 493
           +A   +  S +S
Sbjct: 300 EAPFLHYLSMFS 311

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 37/243 (15%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H+ SV G+A++ + + I ASAS DK VK+W+   G+   TL  H+  V  VA+     Q 
Sbjct: 220 HSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAF-RPDGQT 276
Query: 325 LLSGSFDRSVVMKDAR------ISTHSGFKWAVA--ADVESLA----------WDPHAEH 366
           + S S D++V + +        ++ HS   W VA   D +++A          W+ + +H
Sbjct: 277 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336
Query: 367 SFVVSLEDGTIKGF----DIRTAKSDPD-------STSQQSSFTLHAHDKAVCTISYNPL 415
              ++    ++ G     D +T  S  D       + + Q   TL  H  +V  ++++P 
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP- 395
Query: 416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 475
               +A+ S DK VKLW   N     + +    + +V+ VAFS D   + +    K  ++
Sbjct: 396 DGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK-TVK 451
Query: 476 IWD 478
           +W+
Sbjct: 452 LWN 454

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 25/179 (13%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H+  V GLAW  +    LAS   D  V+IWD  +     T  +H   V+AVAW      +
Sbjct: 216 HSSEVCGLAWRSDGLQ-LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 325 LLS--GSFDRSV----VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
           L +  G+ D+ +        AR++T         + V SL W PH++       E  +  
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSK-------EIMSTH 322
Query: 379 GF-DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWDL 434
           GF D   +     S+       + AHD  V    Y+ L P+  +L+T ++D+ +K W +
Sbjct: 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL---YSALSPDGRILSTAASDENLKFWRV 378

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 37/230 (16%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIW-----DVAAGKCNLTLEHHTDKVQAVAWNH 319
           HTD V  +A   +  +I+ SAS DK + +W     D A G     L  H+  V+ V  + 
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
              Q  LSGS+D  + +            W +AA V +  +  H +    V+    ++  
Sbjct: 441 DG-QFALSGSWDGELRL------------WDLAAGVSTRRFVGHTKDVLSVAF---SLDN 484
Query: 380 FDIRTAKSDPD----STSQQSSFTL----HAHDKAVCTISYNP--LVPNLLATGSTDKMV 429
             I +A  D      +T  +  +T+      H   V  + ++P  L P ++ + S DK V
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV-SASWDKTV 543
Query: 430 KLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           K+W+LSN +  S +A      G V +VA S D     A GG  G + +WD
Sbjct: 544 KVWNLSNCKLRSTLAGHT---GYVSTVAVSPDGSLC-ASGGKDGVVLLWD 589

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H D VL  A++ +  + +A+ SADK+VKIWD A GK   T + H+++V    + + S  +
Sbjct: 663 HEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 721
Query: 325 LL-SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
           LL +GS D  + + D          +     V    + P  E     S  DGT++ +D+R
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVR 780
Query: 384 TA 385
           +A
Sbjct: 781 SA 782

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 85/220 (38%), Gaps = 62/220 (28%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           HTD+V    ++++ + I AS  ADK ++++    G+  L ++ H D+V   A++      
Sbjct: 621 HTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS----- 674
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
                        D+ I+T S       AD +   WD                       
Sbjct: 675 ------------DDSYIATCS-------ADKKVKIWD----------------------- 692
Query: 385 AKSDPDSTSQQSSFTLHAHDKAV-CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
                 S + +   T   H + V C    N     LLATGS D  +KLWDL  NQ  C  
Sbjct: 693 ------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL--NQKEC-- 742
Query: 444 SRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLS 481
            RN   G   SV     SP   +LA   + G L +WD  S
Sbjct: 743 -RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H D VL  A++ +  + +A+ SADK+VKIWD A GK   T + H+++V    + + S  +
Sbjct: 656 HEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 714
Query: 325 LL-SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
           LL +GS D  + + D          +     V    + P  E     S  DGT++ +D+R
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVR 773
Query: 384 TA 385
           +A
Sbjct: 774 SA 775

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 85/220 (38%), Gaps = 62/220 (28%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           HTD+V    ++++ + I AS  ADK ++++    G+  L ++ H D+V   A++      
Sbjct: 614 HTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS----- 667
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
                        D+ I+T S       AD +   WD                       
Sbjct: 668 ------------DDSYIATCS-------ADKKVKIWD----------------------- 685
Query: 385 AKSDPDSTSQQSSFTLHAHDKAV-CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
                 S + +   T   H + V C    N     LLATGS D  +KLWDL  NQ  C  
Sbjct: 686 ------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL--NQKEC-- 735
Query: 444 SRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLS 481
            RN   G   SV     SP   +LA   + G L +WD  S
Sbjct: 736 -RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 440
           I+  K D D+++ + S +  AHD ++  I + +P    ++A+ S DK VKLW+   +Q  
Sbjct: 35  IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 94
Query: 441 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 480
           C   R       N   G+++SV F+       LA  G+ G L ++D L
Sbjct: 95  CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 440
           I+  K D D+++ + S +  AHD ++  I + +P    ++A+ S DK VKLW+   +Q  
Sbjct: 33  IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 92
Query: 441 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 480
           C   R       N   G+++SV F+       LA  G+ G L ++D L
Sbjct: 93  CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 140

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 440
           I+  K D D+++ + S +  AHD ++  I + +P    ++A+ S DK VKLW+   +Q  
Sbjct: 35  IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 94
Query: 441 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 480
           C   R       N   G+++SV F+       LA  G+ G L ++D L
Sbjct: 95  CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 27/225 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH-SP- 322
           H  SV  + W      +  S+S DK +K+WD      N          +   ++HH SP 
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT-----NTLQTADVFNFEETVYSHHMSPV 152
Query: 323 ----QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
                ++  G+    V + D +  + S        ++ +++W P  ++    +  D  +K
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 379 GFDIRTAK---------SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429
            +D+R A          +   S + +S+ T  AH+  V  + +     +LL  G TD  +
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANT--AHNGKVNGLCFTSDGLHLLTVG-TDNRM 269
Query: 430 KLWDLSNNQPSCI----ASRNPKAGAVFSVAFSEDSPFVLAIGGS 470
           +LW+ SN + + +       N K G  F+V+    S FV    GS
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 27/227 (11%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H+  V  L W  E +N + SAS D ++ +W+    +    ++ H   V   A+  +   +
Sbjct: 65  HSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123
Query: 325 L------------LSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVVS 371
                        LS   DR   M  +R+ T H G+         S  + P  E   +  
Sbjct: 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY-------ASSCQYVPDQETRLITG 176
Query: 372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 431
             D T   +D+ T +      S+  S     H   V ++S N L  N+  +GS D  V+L
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPS----GHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           WDL     + + + +   G + SV F  D       G   G   ++D
Sbjct: 233 WDLRITSRA-VRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFD 277

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 31/190 (16%)
Query: 311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAV-AADVES----------- 357
           +    AW+H    +L+SG+   +V   DA  ST S  + W++ AAD E            
Sbjct: 14  RTATFAWSHDKIPLLVSGTVSGTV---DANFSTDSSLELWSLLAADSEKPIASLQVDSKF 70
Query: 358 --LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415
             L W  H       +L++G+++ +    A +  +S ++ S+     H  +V T+ +N  
Sbjct: 71  NDLDWS-HNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-----HSSSVKTVKFNAK 124
Query: 416 VPNLLATGSTDKMVKLWDL-------SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
             N+LA+G  +  + +WD+       SN  P            V S+A+++    V A  
Sbjct: 125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184
Query: 469 GSKGKLEIWD 478
           GS     IWD
Sbjct: 185 GSSNFASIWD 194

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 332
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 65  KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
            K + D+ +     TL  H   V  ++++P  L+ + +A+ S D+   +W   N Q    
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK 244
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
           NI+ S S D  + +WDVA  KC   L  HTD++ +  ++H   +  +S S D ++ + D 
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC-ISASMDTTIRIWDL 339
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
               +    + +      +     ++   V +  DG+I+G+         D+      F+
Sbjct: 340 E---NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW---------DANDYSRKFS 387
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKM 428
            H  + +  T  Y  +  N+L +GS ++ 
Sbjct: 388 YHHTNLSAITTFY--VSDNILVSGSENQF 414

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 332
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
            K + D+ +     TL  H   V  ++++P  L+ + LA+ S D+   +W   N Q    
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
           NI+ S S D  + +WDVA  KC   L  HTD++ +  ++H   +  +S S D ++ + D 
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRC-ISASXDTTIRIWDL 339
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
               +    + +      +     ++   V +  DG+I+G+         D+      F+
Sbjct: 340 E---NGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW---------DANDYSRKFS 387
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKM 428
            H  + +  T  Y  +  N+L +GS ++ 
Sbjct: 388 YHHTNLSAITTFY--VSDNILVSGSENQF 414

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343
           S S D  +K+WD+A      +   H  +V  VA + H   + LS S D  +++ D R   
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203
Query: 344 HSGFKWAVAADV--ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 401
            +      A      SLAW P     FV   E+GT+   D +         S     +  
Sbjct: 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK---------STSCVLSSA 254
Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
            H + V  + ++P     LA+ S D  + + D S ++
Sbjct: 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE 291

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHS--PQILLSGSFDR 332
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 67  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 127 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 186
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
            K + D+ +     TL  H   V  ++++P  L+ + LA+ S D+   +W   N Q    
Sbjct: 187 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 246
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-----TLEHHTDKVQAVAWNH 319
           H   V  +A   +F +++ SAS DK + +W +   + N       L  H+  V  V  + 
Sbjct: 37  HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
              Q  LSGS+D ++ + D    T +        DV S+A+        V    D TIK 
Sbjct: 97  DG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKL 154
Query: 380 FDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSN 436
           ++          T     +T+   +H + V  + ++P   N ++ +   DK+VK+W+L+N
Sbjct: 155 WN----------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 437 NQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
               C    N     G + +V  S D     A GG  G+  +WD
Sbjct: 205 ----CKLKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWD 243

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 332
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 65  KFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
            K + D+ +     TL  H   V  ++++P  L+ +  A+ S D+   +W   N Q    
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWK 244
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-----TLEHHTDKVQAVAWNH 319
           H   V  +A   +F +++ SAS DK + +W +   + N       L  H+  V  V  + 
Sbjct: 14  HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 73
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
              Q  LSGS+D ++ + D    T +        DV S+A+        V    D TIK 
Sbjct: 74  DG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKL 131
Query: 380 FDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSN 436
           ++          T     +T+   +H + V  + ++P   N ++ +   DK+VK+W+L+N
Sbjct: 132 WN----------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 437 NQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
               C    N     G + +V  S D     A GG  G+  +WD
Sbjct: 182 ----CKLKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWD 220

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
           N   SAS D  +++W++  G+C      HT  V +VA++  + QI+  G  +   V    
Sbjct: 80  NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSF 398
               H+  + A    V  + + P  +   +VS   D  +K +D+ T +   D        
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD-------- 191
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
            L  H   V +++ +P   +L A+   D + +LWDL+  +
Sbjct: 192 -LKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTKGE 229

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHS--PQILLSGSFDR 332
           +F  ILAS S D +V IW    G+ +    H  H+  V +V W  H   P +L++ S  +
Sbjct: 65  KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
            SVV      +T      A A  V S +W P       EH+           G D  ++ 
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
            K + D+ +     TL  H   V  ++++P  L+ + LA+ S D+   +W   N Q    
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
            +  +  K   V   A    S  VLA+ G   K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	502
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.98
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.76
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.64
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.63
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.63
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.6
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.6
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.55
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.55
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.54
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.54
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.51
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.5
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.5
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.49
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.48
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.47
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.46
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.44
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.42
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.42
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.38
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.34
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.33
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.3
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.28
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.27
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.23
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.22
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.21
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.2
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.17
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.11
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.08
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.07
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.06
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.03
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.02
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.0
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.98
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.97
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.95
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.94
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.93
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.9
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.9
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.89
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.87
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.86
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.84
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.84
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.83
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.83
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.8
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.78
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.73
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.72
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.69
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.67
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.64
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.59
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.58
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.58
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.57
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.57
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.56
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.55
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.53
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.52
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.51
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.48
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.46
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.45
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.4
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.39
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.38
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.34
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.33
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.31
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.26
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.26
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.26
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.26
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.24
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.21
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.17
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.16
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.12
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.11
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.08
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.07
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.07
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.06
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.02
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.99
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.95
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.94
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.92
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.9
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.86
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.84
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.73
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.73
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.71
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.63
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.61
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.59
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.58
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.57
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.55
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.51
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.42
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.4
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.37
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.31
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.29
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.27
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.24
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.19
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.13
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.1
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.08
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.07
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.07
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.02
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.94
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.87
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.74
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.65
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.61
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.46
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.44
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.37
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.23
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.14
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.05
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.91
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.68
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.64
3ott_A	758	Two-component system sensor histidine kinase; beta	95.49
3ott_A	758	Two-component system sensor histidine kinase; beta	95.19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.19
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.67
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.37
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.17
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.89
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.82
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.59
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.56
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.56
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.47
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.21
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.06
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	91.34
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	91.29
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.5
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	89.27
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	88.47
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.12
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	87.93
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.26
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	84.41
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	83.55
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.83
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.67
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.24
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	81.72
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	80.34

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.7e-44  Score=349.53  Aligned_cols=301  Identities=20%  Similarity=0.243  Sum_probs=238.9

Q ss_pred             CccccccccccCCCceEEEEEecCCcc--eeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVS--HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~--~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      +...|.++.|+|+|++|++++ ++.+.  ...++.|.........-.............+++|       +|+ +.|++|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~d-~~l~~~   99 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW-------VGE-RGILVA   99 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE-------ETT-TEEEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE-------eCC-CeEEEE
Confidence            566799999999999999887 43221  1234455432221101000111111223467777       566 478899


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.||.|+|||+.+.+....                       ......+|.+.|++|+|+|+ +.+|++|+.|++|++||
T Consensus       100 s~dg~v~lWd~~~~~~~~~-----------------------~~~~~~~H~~~V~~v~~spd-g~~l~sgs~d~~i~iwd  155 (344)
T 4gqb_B          100 SDSGAVELWELDENETLIV-----------------------SKFCKYEHDDIVSTVSVLSS-GTQAVSGSKDICIKVWD  155 (344)
T ss_dssp             ETTSEEEEEEECTTSSCEE-----------------------EEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred             ECCCEEEEEeccCCCceeE-----------------------eeccccCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEE
Confidence            9999999999986543321                       12234589999999999999 56999999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce--EeecCCeEEEEeCCCCCCEEEEEeC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      +.+++++.++.+|...|++++|++++..+|++++.|++|++||+++++.....  ..+...+.+++|+|.+..++++|+.
T Consensus       156 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~  235 (344)
T 4gqb_B          156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE  235 (344)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred             CCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc
Confidence            99999999999999999999999998778999999999999999988765433  2345578999999988889999999


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      ||.|++||+++.         +++..+.+|...|++++|+|++..+|++|+.|++|+|||+.+++   +....+|.+.|+
T Consensus       236 dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---~~~~~~H~~~V~  303 (344)
T 4gqb_B          236 NGTVSLVDTKST---------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---LFRSQAHRDFVR  303 (344)
T ss_dssp             TSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---EEEECCCSSCEE
T ss_pred             CCcEEEEECCCC---------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---EEEEcCCCCCEE
Confidence            999999999986         77889999999999999999987789999999999999999886   445688999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          454 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       454 ~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +++|+|+++++|++||.||+|++|++.+..
T Consensus       304 ~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          304 DATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            999999998889999999999999997754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.1e-43  Score=342.87  Aligned_cols=308  Identities=19%  Similarity=0.236  Sum_probs=234.7

Q ss_pred             CCccccccccccCCCceEEEEEecCCc-ceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDV-SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~-~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      .|+..|.+++|+|+|++||+|+.+... --..|++|+......................|++|       +|++.+ +++
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------s~d~~~-l~~  111 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAW-------VSEKGI-LVA  111 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEE-------ETTTEE-EEE
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEE-------cCCCCE-EEE
Confidence            488899999999999999999864310 01256777654432111111000111122368888       577765 456


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.+|.|+|||+.......                       .......+|...|++|+|+|+ +.+|++|+.|++|++||
T Consensus       112 s~dg~v~lWd~~~~~~~~-----------------------~~~~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd  167 (357)
T 4g56_B          112 SDSGAVELWEILEKESLL-----------------------VNKFAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWD  167 (357)
T ss_dssp             ETTSCEEEC--------C-----------------------CCCEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEE
T ss_pred             ECCCEEEEeeccccceeE-----------------------EEeeccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEE
Confidence            789999999997543322                       112234479999999999999 56999999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE--eecCCeEEEEeCCCCCCEEEEEeC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      +.+++++..+.+|...|++++|++++..+|++++.||+|++||+++++......  .+...+.+++|+|++..+|++|+.
T Consensus       168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~  247 (357)
T 4g56_B          168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE  247 (357)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence            999999999999999999999999987789999999999999999877654332  356679999999998889999999


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      |+.|++||+++.         .++..+.+|...|++++|+|++..+|++|+.|++|+|||+.+++   +....+|.+.|+
T Consensus       248 d~~i~~wd~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~---~~~~~~H~~~V~  315 (357)
T 4g56_B          248 TGNVSLVNIKNP---------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE---VFRDLSHRDFVT  315 (357)
T ss_dssp             SSCEEEEESSCG---------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE---EEEECCCSSCEE
T ss_pred             ccceeEEECCCC---------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc---EeEECCCCCCEE
Confidence            999999999986         77888999999999999999987899999999999999999886   234457999999


Q ss_pred             EEEEcC-CCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          454 SVAFSE-DSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       454 ~~~~sp-d~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +++|+| ++. +|++|+.||+|++|++.+........
T Consensus       316 ~vafsP~d~~-~l~s~s~Dg~v~iW~~~~~~~~~~~i  351 (357)
T 4g56_B          316 GVAWSPLDHS-KFTTVGWDHKVLHHHLPSEGRTENLI  351 (357)
T ss_dssp             EEEECSSSTT-EEEEEETTSCEEEEECC---------
T ss_pred             EEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccccc
Confidence            999999 666 69999999999999997765544443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.6e-42  Score=344.45  Aligned_cols=287  Identities=22%  Similarity=0.379  Sum_probs=246.6

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.++.|+|++++|++|+.++   .++||.+..... ...+..|..     ...|+.|       +|++++||+|
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg---~i~vwd~~~~~~-~~~l~~h~~-----~V~~v~~-------~~~~~~l~sg  168 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDA---TIKVWDYETGDF-ERTLKGHTD-----SVQDISF-------DHSGKLLASC  168 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSS---CEEEEETTTCCC-CEEECCCSS-----CEEEEEE-------CTTSSEEEEE
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCcE-EEEEeccCC-----cEEEEEE-------cCCCCEEEEE
Confidence            35889999999999999999999887   567776654432 112223332     2367777       7899999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|++|+|||+....                           ....+.+|...|.+++|+|+ +.+|++|+.|++|++||
T Consensus       169 s~D~~i~iwd~~~~~---------------------------~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd  220 (410)
T 1vyh_C          169 SADMTIKLWDFQGFE---------------------------CIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWE  220 (410)
T ss_dssp             ETTSCCCEEETTSSC---------------------------EEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEE
T ss_pred             eCCCeEEEEeCCCCc---------------------------eeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEE
Confidence            999999999997532                           22345689999999999999 56999999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC-----------
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA-----------  364 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~-----------  364 (502)
                      +.+++++.++.+|...|.++.|+|++ .+|++|+.|++|++||+++.........|...|.+++|+|++           
T Consensus       221 ~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  299 (410)
T 1vyh_C          221 VQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS  299 (410)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred             CCCCcEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence            99999999999999999999999999 899999999999999999888776666888999999999963           


Q ss_pred             --------CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          365 --------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       365 --------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                              ..++++|+.||.|++||++++         .++..+.+|...|++++|+|++ .+|++|+.|++|++||+.+
T Consensus       300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---------~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             C-------CCEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTT
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCC---------ceEEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC
Confidence                    348999999999999999986         7788899999999999999998 8999999999999999988


Q ss_pred             CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      ++  ++..+.+|...|++++|+|++++ |++|+.||+|+||+++
T Consensus       370 ~~--~~~~~~~h~~~v~~l~~~~~~~~-l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          370 KR--CMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SC--CCEEEECCSSCEEEEEECSSSSC-EEEEETTSEEEEEC--
T ss_pred             Cc--eEEEEcCCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEeCC
Confidence            77  56677889999999999999995 9999999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.4e-41  Score=324.94  Aligned_cols=286  Identities=20%  Similarity=0.310  Sum_probs=243.0

Q ss_pred             CCCccccccccccCC----CceEEEEEecCCcceeEEEEEecCCCCC-CceeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010769          136 DEDSEDLEDMTINPN----DAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~----~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~  210 (502)
                      ..|.+.|.+++|+|+    +.+|++|+.++   .++||.+....... ..+..|..     ...++.|       ++++.
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~---~v~vW~~~~~~~~~~~~l~gh~~-----~v~~~~~-------~~~~~   93 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDD---LVKVWKWRDERLDLQWSLEGHQL-----GVVSVDI-------SHTLP   93 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTS---CEEEEEEETTEEEEEEEECCCSS-----CEEEEEE-------CSSSS
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCC---CEEEEECCCCCeeeeeeeccCCC-----CEEEEEE-------CCCCC
Confidence            458999999999985    56899999887   67999887543200 01112222     2256666       78899


Q ss_pred             EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769          211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ  290 (502)
Q Consensus       211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~  290 (502)
                      ++++|+.|+.|+|||+..+..                           ...+..|...+.+++|+|+ +.+|++|+.+|.
T Consensus        94 ~l~s~s~D~~i~lWd~~~~~~---------------------------~~~~~~~~~~~~~~~~spd-g~~l~~g~~dg~  145 (321)
T 3ow8_A           94 IAASSSLDAHIRLWDLENGKQ---------------------------IKSIDAGPVDAWTLAFSPD-SQYLATGTHVGK  145 (321)
T ss_dssp             EEEEEETTSEEEEEETTTTEE---------------------------EEEEECCTTCCCCEEECTT-SSEEEEECTTSE
T ss_pred             EEEEEeCCCcEEEEECCCCCE---------------------------EEEEeCCCccEEEEEECCC-CCEEEEEcCCCc
Confidence            999999999999999975322                           2233467788999999999 569999999999


Q ss_pred             EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEE
Q 010769          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  370 (502)
                      |++|++.+++....+..|...|.+++|+|++ ++|++|+.||.|++||+++++.......|...|.+++|+|++. +|++
T Consensus       146 v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s  223 (321)
T 3ow8_A          146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVT  223 (321)
T ss_dssp             EEEEETTTCSEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEE
T ss_pred             EEEEEcCCCceeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEE
Confidence            9999999999999999999999999999999 8999999999999999998877665667888999999999876 8999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010769          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG  450 (502)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~  450 (502)
                      ++.||.|++||++..         .....+.+|...|.+++|+|++ .+|++++.|++|++||+.+++  ++..+..|.+
T Consensus       224 ~s~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~--~~~~~~~h~~  291 (321)
T 3ow8_A          224 ASDDGYIKIYDVQHA---------NLAGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRT--CVHTFFDHQD  291 (321)
T ss_dssp             ECTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--EEEEECCCSS
T ss_pred             EcCCCeEEEEECCCc---------ceeEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCE--EEEEEcCCCC
Confidence            999999999999976         6778889999999999999998 899999999999999999887  6778889999


Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       451 ~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      .|.+++|+|++. .|++++.||.|+|||+
T Consensus       292 ~v~~v~~s~~g~-~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          292 QVWGVKYNGNGS-KIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             CEEEEEECTTSS-EEEEEETTCCEEEEEC
T ss_pred             cEEEEEECCCCC-EEEEEeCCCeEEEEeC
Confidence            999999999999 5899999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-40  Score=323.97  Aligned_cols=286  Identities=18%  Similarity=0.315  Sum_probs=237.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.+++|+|++++|++|+.++   .++||.......  ......|    .....++.|       +|++++||+|+
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg---~v~iWd~~~~~~--~~~~~~~----~~~v~~~~~-------s~~~~~l~s~~  116 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDG---KLIIWDSYTTNK--VHAIPLR----SSWVMTCAY-------APSGNYVACGG  116 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTT---EEEEEETTTCCE--EEEEECS----SSCEEEEEE-------CTTSSEEEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCC---cEEEEECCCCCc--ceEeecC----CccEEEEEE-------CCCCCEEEEEe
Confidence            4888999999999999999999887   455554432221  1111112    233456666       79999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .|+.|+||++......                       ......+.+|...|.++.|+++ + .|++++.|++|++||+
T Consensus       117 ~d~~v~iw~~~~~~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~-~-~l~s~s~d~~i~~wd~  171 (340)
T 1got_B          117 LDNICSIYNLKTREGN-----------------------VRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDI  171 (340)
T ss_dssp             TTCEEEEEETTTCSBS-----------------------CEEEEEEECCSSCEEEEEEEET-T-EEEEEETTSCEEEEET
T ss_pred             CCCeEEEEECccCCCc-----------------------ceeEEEecCCCccEEEEEECCC-C-cEEEEECCCcEEEEEC
Confidence            9999999999753211                       1222345589999999999987 3 5899999999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      .+++++..+.+|...|.+++|+|++ .+|++|+.|+.|++||++++........|...|.+++|+|++. +|++|+.||.
T Consensus       172 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~  249 (340)
T 1got_B          172 ETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDAT  249 (340)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             CCCcEEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCc
Confidence            9999999999999999999999998 8999999999999999998887766667889999999999865 8999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEe--cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEE
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  454 (502)
                      |++||+++.         ..+..+.  .+...|++++|+|++ .+|++|+.|+.|++||+.+.+  .+..+.+|.+.|.+
T Consensus       250 v~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~  317 (340)
T 1got_B          250 CRLFDLRAD---------QELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSC  317 (340)
T ss_dssp             EEEEETTTT---------EEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEE
T ss_pred             EEEEECCCC---------cEEEEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCc--EeeEeecCCCcEEE
Confidence            999999976         4444443  234579999999998 999999999999999999887  56677899999999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          455 VAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       455 ~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      ++|+|++.+ |++|+.||.|+|||
T Consensus       318 ~~~s~dg~~-l~s~s~D~~i~iWd  340 (340)
T 1got_B          318 LGVTDDGMA-VATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECTTSSC-EEEEETTSCEEEEC
T ss_pred             EEEcCCCCE-EEEEcCCccEEecC
Confidence            999999995 99999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=9.5e-41  Score=329.77  Aligned_cols=299  Identities=21%  Similarity=0.319  Sum_probs=240.0

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|++++|++|+.++   .++||.......  ...+..|.    ....+++|       +|++++||+|
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~---~v~iWd~~~~~~--~~~~~~h~----~~v~~~~~-------s~~g~~las~  126 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDG---RLIVWNALTSQK--THAIKLHC----PWVMECAF-------APNGQSVACG  126 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTS---EEEEEETTTTEE--EEEEECCC----TTCCCCEE-------CTTSSEEEEC
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCcc--ceEEecCC----CCEEEEEE-------CCCCCEEEEe
Confidence            45899999999999999999999887   556665433221  11111221    22355555       8999999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|+.|+||++.......                    ........+.+|...|.++.|+|++...|++|+.|++|++||
T Consensus       127 ~~d~~v~iw~~~~~~~~~--------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd  186 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRD--------------------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWD  186 (380)
T ss_dssp             CSSSCCEEEECCCCSSCC--------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEEC
T ss_pred             eCCCcEEEEECCCCcccc--------------------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEE
Confidence            999999999997532111                    112233456789999999999998777899999999999999


Q ss_pred             CCCCeeeEEe-----ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC-CCccceEeecCCeEEEEeCCCCCCEEE
Q 010769          296 VAAGKCNLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       296 ~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~  369 (502)
                      +.+++++..+     .+|...|.+++|++.++.+|++|+.|++|++||++.. ........|...|.+++|+|++. +|+
T Consensus       187 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~  265 (380)
T 3iz6_a          187 VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFG  265 (380)
T ss_dssp             TTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEE
T ss_pred             cCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEE
Confidence            9999988877     6799999999999855589999999999999999854 44454567889999999999875 899


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-------CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      +|+.||.|++||++++         ..+..+..+.       ..|++++|+|++ .+|++|+.||.|++||+..++.  +
T Consensus       266 s~s~D~~i~lwd~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~--~  333 (380)
T 3iz6_a          266 TGSDDGTCRLFDMRTG---------HQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEM--V  333 (380)
T ss_dssp             EECSSSCEEEEETTTT---------EEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCE--E
T ss_pred             EEcCCCeEEEEECCCC---------cEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCce--E
Confidence            9999999999999986         4444444332       358999999998 9999999999999999988873  3


Q ss_pred             EEe----cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          443 ASR----NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       443 ~~~----~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      ..+    .+|.+.|++++|+|++. +|++|+.||+|+||++...+.
T Consensus       334 ~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          334 LNLGTLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             EEECCSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEEEECCSSSS
T ss_pred             EEEecccCCCCCceEEEEECCCCC-EEEEeeCCCCEEEEecCCCcc
Confidence            333    67999999999999999 599999999999999976543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-39  Score=318.96  Aligned_cols=290  Identities=17%  Similarity=0.256  Sum_probs=237.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.+++|+|++++|++|+.++   .++||......     . .+.-........+++|       +|+|++||+|+
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~Dg---~v~vWd~~~~~-----~-~~~~~~~~~~v~~~~~-------sp~g~~lasg~  125 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQDG---KVIVWDSFTTN-----K-EHAVTMPCTWVMACAY-------APSGCAIACGG  125 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCC-----E-EEEEECSSSCCCEEEE-------CTTSSEEEEES
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCC---eEEEEECCCCC-----c-ceEEecCCCCEEEEEE-------CCCCCEEEEee
Confidence            4889999999999999999999887   45555433221     1 1111111233456666       89999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .|+.|++|++.......                     .......+.+|...|.+++|+|+ +..|++|+.|++|++||+
T Consensus       126 ~d~~i~v~~~~~~~~~~---------------------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~lwd~  183 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNEN---------------------MAAKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCALWDV  183 (354)
T ss_dssp             TTSEEEEEECCCCTTCC---------------------SGGGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEEEET
T ss_pred             CCCCEEEEEEecccccc---------------------ccccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEeC
Confidence            99999999986432111                     01222344579999999999999 568999999999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCC-CcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      .+++++..+.+|...|.+++|+|.. +.+|++|+.||+|++||+++++.......|...|.+++|+|++. +|++++.|+
T Consensus       184 ~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~  262 (354)
T 2pbi_B          184 ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD-AFASGSDDA  262 (354)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             CCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCC
Confidence            9999999999999999999998853 27999999999999999999887766667889999999999865 899999999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEec--CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      .|++||++..         ..+..+..  +...+++++|+|++ .+|++|+.|+.|++||+.+++  .+..+.+|.+.|+
T Consensus       263 ~v~lwd~~~~---------~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~--~~~~l~~h~~~v~  330 (354)
T 2pbi_B          263 TCRLYDLRAD---------REVAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGS--RVSILFGHENRVS  330 (354)
T ss_dssp             CEEEEETTTT---------EEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCS--EEEEECCCSSCEE
T ss_pred             eEEEEECCCC---------cEEEEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCc--eEEEEECCCCcEE
Confidence            9999999976         33444433  34578999999998 999999999999999998887  5667789999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          454 SVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       454 ~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      +++|+|++.+ |++|+.||+|+||+
T Consensus       331 ~l~~spdg~~-l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          331 TLRVSPDGTA-FCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTSSC-EEEEETTSEEEEEC
T ss_pred             EEEECCCCCE-EEEEcCCCCEEecC
Confidence            9999999995 99999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.1e-40  Score=314.99  Aligned_cols=289  Identities=20%  Similarity=0.259  Sum_probs=234.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|.+.|.+++|+|++++|++|+.++   .++||.+.....  ...+..|.    ....++.|       +|++++|++|+
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg---~v~lWd~~~~~~--~~~~~~~~----~~v~~~~~-------~~~~~~l~s~s   74 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSG---RVELWNYETQVE--VRSIQVTE----TPVRAGKF-------IARKNWIIVGS   74 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTS---EEEEEETTTTEE--EEEEECCS----SCEEEEEE-------EGGGTEEEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCC---cEEEEECCCCce--eEEeeccC----CcEEEEEE-------eCCCCEEEEEC
Confidence            4778999999999999999999887   556666543321  11112222    22356666       68899999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .|+.|+|||+.++.                           ....+.+|...|++++|+|+ +.+|++|+.|++|++||+
T Consensus        75 ~d~~i~vwd~~~~~---------------------------~~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           75 DDFRIRVFNYNTGE---------------------------KVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             TTSEEEEEETTTCC---------------------------EEEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEEG
T ss_pred             CCCEEEEEECCCCc---------------------------EEEEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEEEC
Confidence            99999999997533                           22345589999999999999 569999999999999999


Q ss_pred             CCC-eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCC-CCCEEEEEeC
Q 010769          297 AAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPH-AEHSFVVSLE  373 (502)
Q Consensus       297 ~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~-~~~~l~~~~~  373 (502)
                      .++ .+...+.+|...|.+++|+|.++.+|++|+.|++|++||++......... .+...+..+.|+|. ...++++|+.
T Consensus       127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~  206 (304)
T 2ynn_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (304)
T ss_dssp             GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred             CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence            887 56677899999999999999655899999999999999998776554333 34577999999874 2348999999


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      ||.|++||+++.         .++..+.+|...|.+++|+|++ .+|++|+.||+|++||+.+.+  ++..+..|...++
T Consensus       207 D~~i~iWd~~~~---------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~~~~~~~  274 (304)
T 2ynn_A          207 DLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERSW  274 (304)
T ss_dssp             TSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCC--EEEEECCSSSSEE
T ss_pred             CCeEEEEeCCCC---------ccceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--eeeeccCCCccEE
Confidence            999999999986         7888999999999999999998 899999999999999999987  5677888889999


Q ss_pred             EEEEcCCCCcE-EEEEeCCCcEEEEECCCC
Q 010769          454 SVAFSEDSPFV-LAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       454 ~~~~spd~~~l-lasg~~dg~i~vwd~~~~  482 (502)
                      +++|+|++... +++|+.+ .+.+|++...
T Consensus       275 ~~~~~~~~~~~~~asg~~~-g~~~~~~~~~  303 (304)
T 2ynn_A          275 CIATHPTGRKNYIASGFDN-GFTVLSLGND  303 (304)
T ss_dssp             EEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred             EEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence            99999988643 6666554 5888888653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=317.73  Aligned_cols=306  Identities=22%  Similarity=0.360  Sum_probs=235.2

Q ss_pred             Ccc-ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC-CceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          138 DSE-DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       138 ~~~-~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      |.+ .|.+++|+|++++||+|+.++   .++||......... ..+...|.    ....+++|       +|++++||+|
T Consensus        14 h~~~~v~~l~~sp~g~~las~~~D~---~i~iw~~~~~~~~~~~~~~~~h~----~~v~~~~~-------sp~g~~l~s~   79 (345)
T 3fm0_A           14 HPDSRCWFLAWNPAGTLLASCGGDR---RIRIWGTEGDSWICKSVLSEGHQ----RTVRKVAW-------SPCGNYLASA   79 (345)
T ss_dssp             STTSCEEEEEECTTSSCEEEEETTS---CEEEEEEETTEEEEEEEECSSCS----SCEEEEEE-------CTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEcCCC---eEEEEEcCCCcceeeeeeccccC----CcEEEEEE-------CCCCCEEEEE
Confidence            555 899999999999999999887   67888776542100 01111122    23367777       7999999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|+.|+||++....                         ......+.+|...|.+++|+|+ +++|++|+.|++|++||
T Consensus        80 s~D~~v~iw~~~~~~-------------------------~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd  133 (345)
T 3fm0_A           80 SFDATTCIWKKNQDD-------------------------FECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWE  133 (345)
T ss_dssp             ETTSCEEEEEECCC--------------------------EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred             ECCCcEEEEEccCCC-------------------------eEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEE
Confidence            999999999986421                         1223345689999999999999 67999999999999999


Q ss_pred             CCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc--cceEeecCCeEEEEeCCCCCCEEEE
Q 010769          296 VAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       296 ~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~v~~~p~~~~~l~~  370 (502)
                      +.++   .++..+.+|...|.+++|+|++ .+|++|+.|++|++|+++.....  .....|...|.+++|+|++. +|++
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s  211 (345)
T 3fm0_A          134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLAS  211 (345)
T ss_dssp             ECTTSCEEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEE
T ss_pred             CCCCCCeEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEE
Confidence            9876   4567788999999999999999 89999999999999999876432  33456788999999999875 8999


Q ss_pred             EeCCCeEEEEECCCCCCCCCC------CCCCccEEEec-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC----e
Q 010769          371 SLEDGTIKGFDIRTAKSDPDS------TSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ----P  439 (502)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~------~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~----~  439 (502)
                      ++.||.|++|+..........      ....++..+.+ |...|.+++|+|++ .+|++++.|+.|++|+.....    +
T Consensus       212 ~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~  290 (345)
T 3fm0_A          212 CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQP  290 (345)
T ss_dssp             EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred             EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCccee
Confidence            999999999997543211100      00122334444 88999999999998 889999999999999987542    1


Q ss_pred             e---EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          440 S---CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       440 ~---~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      .   ......+|...|++++|+|+++.+||+|+.||+|++|++.+++.+.
T Consensus       291 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          291 TFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             CEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             eEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence            1   1223468999999999999986679999999999999998877654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.7e-38  Score=303.76  Aligned_cols=250  Identities=19%  Similarity=0.297  Sum_probs=216.1

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|++++||+|+.||.|+|||+.+..                           ....+..|..+|.+++
T Consensus        17 ~~~~f-------sp~~~~l~s~~~dg~v~lWd~~~~~---------------------------~~~~~~~~~~~v~~~~   62 (304)
T 2ynn_A           17 KGIDF-------HPTEPWVLTTLYSGRVELWNYETQV---------------------------EVRSIQVTETPVRAGK   62 (304)
T ss_dssp             EEEEE-------CSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEcCCCcEEEEECCCCc---------------------------eeEEeeccCCcEEEEE
Confidence            67776       8999999999999999999997532                           2223457889999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc-cceEeec
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVA  352 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~  352 (502)
                      |+|+ +++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .+|++|+.|++|++||+++.... .....|.
T Consensus        63 ~~~~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~  140 (304)
T 2ynn_A           63 FIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHE  140 (304)
T ss_dssp             EEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCC
T ss_pred             EeCC-CCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccC
Confidence            9999 6699999999999999999999999999999999999999999 89999999999999999876443 3345688


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCC-CCCEEEEEeCCCcEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPL-VPNLLATGSTDKMVK  430 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~-~~~~l~t~s~dg~i~  430 (502)
                      ..|.+++|+|.+..+|++|+.||.|++||++..         .+...+ ..|...+..+.|+|. ...+|++|+.|++|+
T Consensus       141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~  211 (304)
T 2ynn_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS---------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK  211 (304)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEETTCS---------SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC---------CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence            899999999976679999999999999999876         334444 456788999999873 227999999999999


Q ss_pred             EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +||+++++  ++..+.+|...|.+++|+|+++ +|++|+.||+|+|||+.+++.+..+..+
T Consensus       212 iWd~~~~~--~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          212 IWDYQTKS--CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             EEETTTTE--EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred             EEeCCCCc--cceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeeccCC
Confidence            99999887  6778889999999999999999 5999999999999999998887665443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.1e-38  Score=311.66  Aligned_cols=299  Identities=22%  Similarity=0.334  Sum_probs=231.7

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccc--------------cCCCcceeeeecCC
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII--------------IPAFPLCMAWLDCP  202 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~w~~~~  202 (502)
                      .|...|.+++|+|+|++||+|+. +   .++||.+.....  ......|...              ...+..+++|    
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~-~---~v~i~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~----  131 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCN-K---TTQVYRVSDGSL--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF----  131 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECB-S---CEEEEETTTCCE--EEEECC-----------------CCCCBEEEEEE----
T ss_pred             CCCCEEEEEEECCCCCEEEEEcC-C---cEEEEEecCCCE--EEEecCccccccccccccccccCCCceeEEEEEE----
Confidence            48889999999999999999863 3   456666543321  0001111100              0011345555    


Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                         +|+|++||+|+.|+.|+|||+...                           .....+.+|...|.+++|+|+ +.+|
T Consensus       132 ---s~dg~~l~s~~~d~~i~iwd~~~~---------------------------~~~~~~~~h~~~v~~~~~~p~-~~~l  180 (393)
T 1erj_A          132 ---SPDGKFLATGAEDRLIRIWDIENR---------------------------KIVMILQGHEQDIYSLDYFPS-GDKL  180 (393)
T ss_dssp             ---CTTSSEEEEEETTSCEEEEETTTT---------------------------EEEEEECCCSSCEEEEEECTT-SSEE
T ss_pred             ---CCCCCEEEEEcCCCeEEEEECCCC---------------------------cEEEEEccCCCCEEEEEEcCC-CCEE
Confidence               899999999999999999999742                           223345689999999999999 5699


Q ss_pred             EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce-------EeecCCe
Q 010769          283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-------WAVAADV  355 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v  355 (502)
                      ++|+.|++|++||+.++++...+. +...+.+++|+|..+.+|++|+.||.|++||++++......       ..|...|
T Consensus       181 ~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v  259 (393)
T 1erj_A          181 VSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV  259 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred             EEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence            999999999999999999888876 56789999999944489999999999999999987654322       3567889


Q ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC---CCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD---STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      .+++|+|++. ++++|+.||.|++||+++......   .....+...+.+|...|.+++|+|++ .+|++|+.|+.|++|
T Consensus       260 ~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iw  337 (393)
T 1erj_A          260 YSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFW  337 (393)
T ss_dssp             EEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEE
T ss_pred             EEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEE
Confidence            9999999875 899999999999999986532110   00123456778999999999999998 899999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEcC------CCCcEEEEEeCCCcEEEEECCCC
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFSE------DSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~sp------d~~~llasg~~dg~i~vwd~~~~  482 (502)
                      |+.+++  .+..+.+|.+.|.+++|++      ++. +|++|+.||+|+||++...
T Consensus       338 d~~~~~--~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          338 DKKSGN--PLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             ETTTCC--EEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEEC
T ss_pred             ECCCCe--EEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECccccc
Confidence            999987  4667788999999999986      566 6999999999999998653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.7e-38  Score=299.81  Aligned_cols=287  Identities=20%  Similarity=0.344  Sum_probs=234.1

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|++++|++|+.++   .++||.......  ...+..|.    ....++.|       +|++++|++|
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~~~~~~--~~~~~~h~----~~v~~~~~-------~~~~~~l~s~   83 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADK---LIKIWGAYDGKF--EKTISGHK----LGISDVAW-------SSDSNLLVSA   83 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCCE--EEEECCCS----SCEEEEEE-------CTTSSEEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCC---eEEEEeCCCccc--chhhccCC----CceEEEEE-------cCCCCEEEEE
Confidence            45888999999999999999999887   456665433221  11122222    22367777       7899999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|+.|+|||+.....                           ...+.+|...|.+++|+|+ +++|++|+.|++|++||
T Consensus        84 ~~d~~i~vwd~~~~~~---------------------------~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd  135 (312)
T 4ery_A           84 SDDKTLKIWDVSSGKC---------------------------LKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWD  135 (312)
T ss_dssp             ETTSEEEEEETTTCCE---------------------------EEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEECCCCcE---------------------------EEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEE
Confidence            9999999999975322                           2234579999999999999 66999999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCCCCCEEEEEeCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d  374 (502)
                      +.+++++..+..|...|.+++|+|++ .+|++++.||.|++||+++.+...... .+...+.+++|+|++. ++++++.+
T Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d  213 (312)
T 4ery_A          136 VKTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLD  213 (312)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEEEEETT
T ss_pred             CCCCEEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEEEEcCC
Confidence            99999999999999999999999998 899999999999999999876544332 3456799999999876 89999999


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeE--EEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCE
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT--ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~--l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      |.|++||+++.         ..+..+.+|...+.+  ..+++.+..+|++|+.||.|++||+.+++  .+..+.+|...|
T Consensus       214 ~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v  282 (312)
T 4ery_A          214 NTLKLWDYSKG---------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVV  282 (312)
T ss_dssp             TEEEEEETTTT---------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC--EEEEECCCSSCE
T ss_pred             CeEEEEECCCC---------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch--hhhhhhccCCcE
Confidence            99999999986         667778778765433  34554444899999999999999999887  577888999999


Q ss_pred             EEEEEcCCCCcEEEEEe--CCCcEEEEECC
Q 010769          453 FSVAFSEDSPFVLAIGG--SKGKLEIWDTL  480 (502)
Q Consensus       453 ~~~~~spd~~~llasg~--~dg~i~vwd~~  480 (502)
                      .+++|+|+++ +|++++  .|+.|++|+..
T Consensus       283 ~~~~~~p~~~-~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          283 ISTACHPTEN-IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEEECSSSS-EEEEEECTTTCCEEEEECC
T ss_pred             EEEeecCcCC-ceEEEEccCCccEEEecCC
Confidence            9999999999 577776  69999999863

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.1e-37  Score=300.31  Aligned_cols=288  Identities=17%  Similarity=0.295  Sum_probs=231.5

Q ss_pred             CCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCC---CceeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010769          136 DEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGD---PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~  211 (502)
                      ..|...|.+++|+|++ ++|++|+.++   .+++|.+.......   ...+..|.    ....++.|       +|++++
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~---~v~~W~~~~~~~~~~~~~~~~~~h~----~~v~~~~~-------s~dg~~   79 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDK---TLISWKLTGDDQKFGVPVRSFKGHS----HIVQDCTL-------TADGAY   79 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTS---EEEEEEEEEETTEEEEEEEEEECCS----SCEEEEEE-------CTTSSE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCc---cEEEecCCCCCccccccceEEeCCc----ccEEEEEE-------CCCCCE
Confidence            4589999999999975 8999999887   67888776433200   01112222    22256666       789999


Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v  291 (502)
                      |++|+.|++|+|||+.++.                           ....+.+|...|.+++|+|+ +.+|++|+.|++|
T Consensus        80 l~s~s~D~~v~~wd~~~~~---------------------------~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i  131 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGE---------------------------TYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI  131 (319)
T ss_dssp             EEEEETTSEEEEEETTTTE---------------------------EEEEEECCSSCEEEEEECTT-SCEEEEEETTSCE
T ss_pred             EEEEeCCCEEEEEECCCCC---------------------------eeEEEccCCCcEEEEEEcCC-CCEEEEEeCCCeE
Confidence            9999999999999997532                           22345589999999999999 5699999999999


Q ss_pred             EEEECCCCeeeEEeccCCCCeEEEEEcCCC-----CcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC
Q 010769          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHS-----PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  366 (502)
                      ++||+. ++++..+.+|...|.++.|+|..     ..+|++++.|+.|++||+++.........|...|.+++|+|++. 
T Consensus       132 ~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-  209 (319)
T 3frx_A          132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-  209 (319)
T ss_dssp             EEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS-
T ss_pred             EEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC-
Confidence            999986 56778888999999999999864     24899999999999999998776666667899999999999876 


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      +|++++.||.|++||+++.         ..+..+.. ...|.+++|+|++ .+|++++.+ .+++|++.....  +..+.
T Consensus       210 ~l~s~~~dg~i~iwd~~~~---------~~~~~~~~-~~~v~~~~~sp~~-~~la~~~~~-~i~v~~~~~~~~--~~~~~  275 (319)
T 3frx_A          210 LIASAGKDGEIMLWNLAAK---------KAMYTLSA-QDEVFSLAFSPNR-YWLAAATAT-GIKVFSLDPQYL--VDDLR  275 (319)
T ss_dssp             EEEEEETTCEEEEEETTTT---------EEEEEEEC-CSCEEEEEECSSS-SEEEEEETT-EEEEEEETTEEE--EEEEC
T ss_pred             EEEEEeCCCeEEEEECCCC---------cEEEEecC-CCcEEEEEEcCCC-CEEEEEcCC-CcEEEEeCcCee--eeccC
Confidence            8999999999999999986         56666664 5689999999998 888887755 599999987652  32222


Q ss_pred             --------CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          447 --------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       447 --------~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                              .|...+.+++|+|+|++ |++|+.||.|+|||+.++
T Consensus       276 ~~~~~~~~~~~~~v~~~~~spdg~~-l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          276 PEFAGYSKAAEPHAVSLAWSADGQT-LFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCCTTCCGGGCCCEEEEEECTTSSE-EEEEETTSCEEEEEEEEC
T ss_pred             ccccccccCcCcceeEEEECCCCCE-EEEeecCceEEEEEEeec
Confidence                    24567999999999995 899999999999999764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.1e-38  Score=312.81  Aligned_cols=250  Identities=22%  Similarity=0.331  Sum_probs=223.9

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|+.|       +|++++||+|+.||.|+|||+.++..                           ...+.+|...|++++
T Consensus       112 ~~~~~-------~p~~~~l~s~s~Dg~i~vwd~~~~~~---------------------------~~~l~~h~~~V~~v~  157 (410)
T 1vyh_C          112 TRVIF-------HPVFSVMVSASEDATIKVWDYETGDF---------------------------ERTLKGHTDSVQDIS  157 (410)
T ss_dssp             EEEEE-------CSSSSEEEEEESSSCEEEEETTTCCC---------------------------CEEECCCSSCEEEEE
T ss_pred             EEEEE-------cCCCCEEEEEeCCCeEEEEECCCCcE---------------------------EEEEeccCCcEEEEE
Confidence            67777       78999999999999999999975332                           234568999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  353 (502)
                      |+|+ +.+|++|+.|++|+|||+.+++++.++.+|...|.+++|+|++ .+|++|+.|++|++||++++........|..
T Consensus       158 ~~~~-~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~  235 (410)
T 1vyh_C          158 FDHS-GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHRE  235 (410)
T ss_dssp             ECTT-SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EcCC-CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCc
Confidence            9999 5699999999999999999999999999999999999999998 8999999999999999999887776778889


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC-----------------
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-----------------  416 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-----------------  416 (502)
                      .|.++.|+|++. ++++|+.||.|++||+++.         .....+..|...|.+++|+|++                 
T Consensus       236 ~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (410)
T 1vyh_C          236 WVRMVRPNQDGT-LIASCSNDQTVRVWVVATK---------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG  305 (410)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred             cEEEEEECCCCC-EEEEEcCCCeEEEEECCCC---------ceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence            999999999865 8999999999999999886         6778889999999999999962                 


Q ss_pred             --CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          417 --PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       417 --~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                        +.+|++|+.|++|++||++++.  ++..+.+|.+.|++++|+|++.+ |++|+.||.|++||+.+++++..+.+|.
T Consensus       306 ~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~i~vwd~~~~~~~~~~~~h~  380 (410)
T 1vyh_C          306 KPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNAHE  380 (410)
T ss_dssp             --CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCc--eEEEEECCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence              2689999999999999999887  56777889999999999999995 8899999999999999988877665543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-38  Score=303.09  Aligned_cols=304  Identities=19%  Similarity=0.308  Sum_probs=220.9

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCcee-eeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY-VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      .|...|.++.|+|+  +|++|+.++   .+++|.+.....   .+. ............+++|       +|++++||+|
T Consensus        12 ~h~~~v~~~~~s~~--~las~~~D~---~i~lw~~~~~~~---~~~~~~~~~~h~~~v~~v~~-------sp~~~~las~   76 (330)
T 2hes_X           12 LYKEKIWSFDFSQG--ILATGSTDR---KIKLVSVKYDDF---TLIDVLDETAHKKAIRSVAW-------RPHTSLLAAG   76 (330)
T ss_dssp             CCSSCEEEEEEETT--EEEEEESSS---CEEEEECSSSCC---EEEEEECTTCCCSCEEEEEE-------CTTSSEEEEE
T ss_pred             cCCCceeeeccCCC--EEEEEcCCC---EEEEEEecCCCe---EEEEEEecCCccCCEEEEEE-------CCCCCEEEEE
Confidence            47889999999998  899998887   567777654321   111 1100001223367777       7899999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|+.|+||++......                    .........+.+|...|++++|+|+ +.+|++|+.|++|++||
T Consensus        77 s~D~~v~iw~~~~~~~~--------------------~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           77 SFDSTVSIWAKEESADR--------------------TFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             ETTSCEEEEEC---------------------------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTSCEEEEE
T ss_pred             eCCCcEEEEEcccCcCc--------------------cccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEe
Confidence            99999999998531100                    0012233456689999999999999 56999999999999999


Q ss_pred             CCC----CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC--CCccceEeecCCeEEEEeCCCC-CCEE
Q 010769          296 VAA----GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFKWAVAADVESLAWDPHA-EHSF  368 (502)
Q Consensus       296 ~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~v~~~p~~-~~~l  368 (502)
                      +..    .+++..+.+|...|.+++|+|++ .+|++|+.|++|++||++..  ........|...|.+++|+|++ ...+
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  214 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL  214 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence            943    25678889999999999999998 89999999999999998765  3344445788899999999973 3478


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ec
Q 010769          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RN  446 (502)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~  446 (502)
                      ++|+.|++|++|+++........ .......+.. |...|.+++|++.  .+|++++.||.|++|++.++....... ..
T Consensus       215 ~s~s~D~~v~iw~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~v~~s~~--~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~  291 (330)
T 2hes_X          215 CSGSDDSTVRVWKYMGDDEDDQQ-EWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVDGEWKVFAKRAL  291 (330)
T ss_dssp             EEEETTSCEEEEEEEEECTTSCE-EEEEEEECCSCCSSCEEEEEECTT--SCEEEEETTSCEEEEEEETTEEEEEEEESC
T ss_pred             EEEeCCCeEEEEEecCCCccccc-eeEEeeecccccccceEEEEEcCC--CEEEEEeCCCEEEEEEcCCCceEEEecccc
Confidence            99999999999999764210000 0012333443 8999999999974  589999999999999998775333333 35


Q ss_pred             CCCC-CEEEEEEcC--CCCcEEEEEeCCCcEEEEECCC
Q 010769          447 PKAG-AVFSVAFSE--DSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       447 ~~~~-~v~~~~~sp--d~~~llasg~~dg~i~vwd~~~  481 (502)
                      .|.. .|.+++|+|  ++. +|++|+.||+|+||++.+
T Consensus       292 ~h~~~~v~~v~~~~~~~~~-~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          292 CHGVYEINVVKWLELNGKT-ILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTTSCEEEEEEC-----C-CEEEEETTSEEEEEEC--
T ss_pred             ccccceEEEEEEecCCCce-EEEEecCCCcEEEEEecc
Confidence            6776 899999999  577 599999999999999865

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=298.47  Aligned_cols=256  Identities=21%  Similarity=0.343  Sum_probs=222.0

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..|++|.+.   ..+++.+||+|+.|++|+||++....                         ......+.+|...|.++
T Consensus        35 V~~v~~~~~---~~~~~~~l~tgs~D~~v~vW~~~~~~-------------------------~~~~~~l~gh~~~v~~~   86 (321)
T 3ow8_A           35 IWSVAWGTN---KKENSETVVTGSLDDLVKVWKWRDER-------------------------LDLQWSLEGHQLGVVSV   86 (321)
T ss_dssp             EEEEEEC----------CEEEEEETTSCEEEEEEETTE-------------------------EEEEEEECCCSSCEEEE
T ss_pred             EEEEEEecC---CCCCCCEEEEEcCCCCEEEEECCCCC-------------------------eeeeeeeccCCCCEEEE
Confidence            378888421   11357899999999999999986321                         11223456899999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      +|+++ ..++++|+.|++|++||+.+++++..+..|...+.+++|+|++ .+|++|+.+|.|++|++++.........+.
T Consensus        87 ~~~~~-~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~  164 (321)
T 3ow8_A           87 DISHT-LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRG  164 (321)
T ss_dssp             EECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred             EECCC-CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence            99999 5699999999999999999999999999999999999999999 899999999999999999887766566677


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      ..+.+++|+|++. ++++|+.||.|++||++++         +.+..+.+|..+|.+++|+|++ .+|++|+.|+.|++|
T Consensus       165 ~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iw  233 (321)
T 3ow8_A          165 KFILSIAYSPDGK-YLASGAIDGIINIFDIATG---------KLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIY  233 (321)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSCEEEEETTTT---------EEEEEECCCSSCCCEEEECTTS-CEEEEECTTSCEEEE
T ss_pred             ceEEEEEECCCCC-EEEEEcCCCeEEEEECCCC---------cEEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEE
Confidence            8899999999876 8999999999999999986         7788899999999999999998 899999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      |++...  ....+.+|...|.+++|+|++. +|++|+.|++|+|||+.+++++....++.
T Consensus       234 d~~~~~--~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~  290 (321)
T 3ow8_A          234 DVQHAN--LAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQ  290 (321)
T ss_dssp             ETTTCC--EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             ECCCcc--eeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCC
Confidence            999887  5677889999999999999999 59999999999999999999888776654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.5e-37  Score=297.95  Aligned_cols=289  Identities=18%  Similarity=0.292  Sum_probs=224.6

Q ss_pred             CCccccccccc-----cC-CCceEEEEEecCCcceeEEEEEecCCCCC------CceeeeeccccCCCcceeeeecCCCC
Q 010769          137 EDSEDLEDMTI-----NP-NDAVIVCARNEDDVSHLEVYILEESDGGD------PNLYVHHHIIIPAFPLCMAWLDCPLK  204 (502)
Q Consensus       137 ~~~~~v~~~~~-----~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~w~~~~~~  204 (502)
                      .|.+.|.++.|     +| ++++|++|+.++   +++||.+.......      ..+..|.     ....++.|      
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~---~v~iWd~~~~~~~~~~~~~~~~l~~h~-----~~V~~~~~------   84 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDK---TVMIWKLYEEEQNGYFGIPHKALTGHN-----HFVSDLAL------   84 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTS---CEEEEEECSSCCSSBSEEEEEEECCCS-----SCEEEEEE------
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCC---EEEEEECCcCCcccccccccchhccCC-----CceEEEEE------
Confidence            48889999999     76 899999999887   67888876543210      0111222     22356766      


Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                       +|++.+|++|+.|++|+|||+.+..                           ....+.+|...|.+++|+|+ +.+|++
T Consensus        85 -~~~~~~l~s~s~D~~v~lwd~~~~~---------------------------~~~~~~~h~~~v~~v~~sp~-~~~l~s  135 (343)
T 2xzm_R           85 -SQENCFAISSSWDKTLRLWDLRTGT---------------------------TYKRFVGHQSEVYSVAFSPD-NRQILS  135 (343)
T ss_dssp             -CSSTTEEEEEETTSEEEEEETTSSC---------------------------EEEEEECCCSCEEEEEECSS-TTEEEE
T ss_pred             -CCCCCEEEEEcCCCcEEEEECCCCc---------------------------EEEEEcCCCCcEEEEEECCC-CCEEEE
Confidence             7899999999999999999997532                           22244589999999999999 569999


Q ss_pred             EecCCcEEEEECCCCeeeEEe---ccCCCCeEEEEEcCCCC---------cEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769          285 ASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSP---------QILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~---------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      |+.|++|++||+... ....+   ..|...|.+++|+|.+.         .+|++++.||.|++||.+ .........|.
T Consensus       136 ~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~  213 (343)
T 2xzm_R          136 AGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHE  213 (343)
T ss_dssp             EETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCS
T ss_pred             EcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCcc
Confidence            999999999999843 33333   37889999999999862         589999999999999954 33333455788


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      ..|.+++|+|++. +|++|+.||.|++||++..        ..+...+ .+...|.+++|+|++ .+|+++ .|+.|++|
T Consensus       214 ~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~--------~~~~~~~-~~~~~v~~v~~sp~~-~~la~~-~d~~v~iw  281 (343)
T 2xzm_R          214 SNVNHLSISPNGK-YIATGGKDKKLLIWDILNL--------TYPQREF-DAGSTINQIAFNPKL-QWVAVG-TDQGVKIF  281 (343)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTCEEEEEESSCC--------SSCSEEE-ECSSCEEEEEECSSS-CEEEEE-ESSCEEEE
T ss_pred             ccceEEEECCCCC-EEEEEcCCCeEEEEECCCC--------cccceee-cCCCcEEEEEECCCC-CEEEEE-CCCCEEEE
Confidence            8999999999876 8999999999999999654        2333333 355679999999987 666654 57889999


Q ss_pred             ECCCCCeeEEEEec-----------CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          433 DLSNNQPSCIASRN-----------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       433 d~~~~~~~~~~~~~-----------~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ++.+.+...+..+.           +|...|.+++|+|++++ |++|+.||.|++|++.++.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          282 NLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK-LFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             ESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC-EEEEETTSEEEEEEEEEEE
T ss_pred             EeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe-EEEecCCceEEEEEEEccC
Confidence            99887644333333           67788999999999995 8999999999999987653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.7e-37  Score=324.13  Aligned_cols=293  Identities=18%  Similarity=0.268  Sum_probs=233.8

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      +...+.++.|+|+|++|++++. +   .+.+|...  .......+..|...    ..|++|       +|+|++||+|+.
T Consensus        17 ~~g~~~~~~~spdg~~l~~~~~-~---~v~l~~~~--~~~~~~~~~~h~~~----v~~~~~-------spdg~~lasg~~   79 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDKIQYCNG-T---SVYTVPVG--SLTDTEIYTEHSHQ----TTVAKT-------SPSGYYCASGDV   79 (611)
T ss_dssp             CTTCCCCCEECTTSSEEEEEET-T---EEEEEETT--CSSCCEEECCCSSC----EEEEEE-------CTTSSEEEEEET
T ss_pred             ccCceeEEeeCCCCCEEEeCCC-C---EEEEecCC--CcccCeEecCCCCc----eEEEEE-------CCCCcEEEEEeC
Confidence            4667899999999999999873 3   45555543  32222334334322    256666       899999999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC----CcEEE
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD----KQVKI  293 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D----g~v~v  293 (502)
                      ||+|+|||+.....                         .....+.+|...|.+++|+|++ .+|++++.+    ++|++
T Consensus        80 d~~v~lWd~~~~~~-------------------------~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~  133 (611)
T 1nr0_A           80 HGNVRIWDTTQTTH-------------------------ILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFL  133 (611)
T ss_dssp             TSEEEEEESSSTTC-------------------------CEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEE
T ss_pred             CCCEEEeECCCCcc-------------------------eeeEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEE
Confidence            99999999864221                         1122345799999999999994 578777765    46888


Q ss_pred             EECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769          294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      ||  +++....+.+|...|.+++|+|+++..|++|+.|++|++||.+..+.......|...|.+++|+|++. +|++++.
T Consensus       134 wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~-~las~s~  210 (611)
T 1nr0_A          134 FD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGG  210 (611)
T ss_dssp             TT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             ee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC-EEEEEEC
Confidence            87  56677889999999999999999856799999999999999987766655667889999999999876 8999999


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEe-------cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE-----
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-----  441 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~-----  441 (502)
                      |+.|++||+.++         ..+..+.       +|...|.+++|+|++ .+|++++.|++|++||+.+++...     
T Consensus       211 D~~i~lwd~~~g---------~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~  280 (611)
T 1nr0_A          211 DGTIVLYNGVDG---------TKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVG  280 (611)
T ss_dssp             TSCEEEEETTTC---------CEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CCcEEEEECCCC---------cEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence            999999999876         4444552       799999999999998 999999999999999998765321     


Q ss_pred             ------------------------------------EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          442 ------------------------------------IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       442 ------------------------------------~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                                                          ...+.+|...|++++|+|+++ +|++++.|++|++||+.++...
T Consensus       281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEE
T ss_pred             CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCcee
Confidence                                                234457899999999999999 5999999999999999988765


Q ss_pred             cc
Q 010769          486 SN  487 (502)
Q Consensus       486 ~~  487 (502)
                      ..
T Consensus       360 ~~  361 (611)
T 1nr0_A          360 RV  361 (611)
T ss_dssp             EC
T ss_pred             ee
Confidence            43

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-38  Score=312.53  Aligned_cols=301  Identities=17%  Similarity=0.281  Sum_probs=242.8

Q ss_pred             CccccccccccCCCc-eEEEE----------EecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCC
Q 010769          138 DSEDLEDMTINPNDA-VIVCA----------RNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR  206 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~-~l~~~----------~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s  206 (502)
                      +...|.+++|+|+++ +|++|          +.++   .++||.+.............|    .....|+.|       +
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~---~v~iw~~~~~~~~~~~~~~~~----~~~v~~~~~-------s   76 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDS---SLELWSLLAADSEKPIASLQV----DSKFNDLDW-------S   76 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCC---CCEEEESSSGGGCSCSCCCCC----SSCEEEEEE-------C
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCC---eEEEEEccCCCCCcEEEEEec----CCceEEEEE-------C
Confidence            346799999999987 88888          4444   567777765432111111122    233468887       7


Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      |++++||+|+.||.|+||++......                       ......+.+|...|++++|+|+++.+|++|+
T Consensus        77 ~~~~~l~~~~~dg~v~vw~~~~~~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  133 (416)
T 2pm9_A           77 HNNKIIAGALDNGSLELYSTNEANNA-----------------------INSMARFSNHSSSVKTVKFNAKQDNVLASGG  133 (416)
T ss_dssp             SSSSCEEEEESSSCEEEECCSSTTSC-----------------------CCEEEECCCSSSCCCEEEECSSSTTBEEEEC
T ss_pred             CCCCeEEEEccCCeEEEeeccccccc-----------------------ccchhhccCCccceEEEEEcCCCCCEEEEEc
Confidence            89999999999999999999742110                       1233455689999999999998667999999


Q ss_pred             cCCcEEEEECCCCe------eeEE---eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee------
Q 010769          287 ADKQVKIWDVAAGK------CNLT---LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV------  351 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~------~~~~---~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------  351 (502)
                      .||+|++||+.+++      ....   +..|...|.+++|+|++..+|++++.||.|++||+++.+.......+      
T Consensus       134 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  213 (416)
T 2pm9_A          134 NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI  213 (416)
T ss_dssp             SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCC
T ss_pred             CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccccc
Confidence            99999999999876      3333   36799999999999996589999999999999999987765544333      


Q ss_pred             cCCeEEEEeCCCCCCEEEEEeCCC---eEEEEECCCCCCCCCCCCCCccEEEe-cCCCCeeEEEEcC-CCCCEEEEEeCC
Q 010769          352 AADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNP-LVPNLLATGSTD  426 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp-~~~~~l~t~s~d  426 (502)
                      ...+.+++|+|++..++++++.++   .|++||+++.        ..++..+. +|...|++++|+| ++ .+|++++.|
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~d  284 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA--------NTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRD  284 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST--------TSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESS
T ss_pred             CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC--------CCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCC
Confidence            678999999999877999999998   9999999986        35566677 8999999999999 55 999999999


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      +.|++||+.+++  .+..+..|.+.|++++|+|+++.+|++++.||.|+||++.+.....
T Consensus       285 g~v~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~  342 (416)
T 2pm9_A          285 NTVLLWNPESAE--QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL  342 (416)
T ss_dssp             SEEEEECSSSCC--EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred             CCEEEeeCCCCc--cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence            999999999887  5677778999999999999994479999999999999998877543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-36  Score=300.57  Aligned_cols=300  Identities=21%  Similarity=0.303  Sum_probs=232.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .+...+....+.+++..+++++.++     .|++|+...+   ...............+++|       +|++++|++|+
T Consensus        89 ~~~~~~~~~~~~~s~~~l~~~~~d~-----~v~lw~~~~~---~~~~~~~~~~~~~v~~v~~-------s~~~~~l~~~~  153 (401)
T 4aez_A           89 GIIDDYYLNLLDWSNLNVVAVALER-----NVYVWNADSG---SVSALAETDESTYVASVKW-------SHDGSFLSVGL  153 (401)
T ss_dssp             TCCCCTTCBCEEECTTSEEEEEETT-----EEEEEETTTC---CEEEEEECCTTCCEEEEEE-------CTTSSEEEEEE
T ss_pred             CCcCCceEEEEeecCCCEEEEECCC-----eEEEeeCCCC---cEeEeeecCCCCCEEEEEE-------CCCCCEEEEEC
Confidence            4555555555555556677888777     5555555444   2221111112344578888       78999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .+|.|+||++....                           ....+.+|...|.+++|++   ++|++|+.||.|++||+
T Consensus       154 ~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~  203 (401)
T 4aez_A          154 GNGLVDIYDVESQT---------------------------KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDV  203 (401)
T ss_dssp             TTSCEEEEETTTCC---------------------------EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEET
T ss_pred             CCCeEEEEECcCCe---------------------------EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEec
Confidence            99999999997532                           2224457999999999954   49999999999999999


Q ss_pred             C-CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEe--C
Q 010769          297 A-AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL--E  373 (502)
Q Consensus       297 ~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~  373 (502)
                      . .+..+..+.+|...|.+++|+|++ .+|++|+.||.|++||+++.........+...|.+++|+|++..++++++  .
T Consensus       204 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~  282 (401)
T 4aez_A          204 RIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM  282 (401)
T ss_dssp             TSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred             ccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence            8 567788889999999999999988 89999999999999999987776656678899999999999888888876  7


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE--EeCCCcEEEEECCCCCeeEEEEecCCCCC
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIASRNPKAGA  451 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  451 (502)
                      +|.|++||+++.         .++..+. |...|.+++|+|++ .+|++  |+.||.|++|++.++.......+.+|.+.
T Consensus       283 d~~i~i~d~~~~---------~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~  351 (401)
T 4aez_A          283 DKQIHFWNAATG---------ARVNTVD-AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR  351 (401)
T ss_dssp             TCEEEEEETTTC---------CEEEEEE-CSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC
T ss_pred             CCEEEEEECCCC---------CEEEEEe-CCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC
Confidence            999999999976         5566664 67889999999998 77777  44899999999998876667777889999


Q ss_pred             EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010769          452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK  494 (502)
Q Consensus       452 v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~  494 (502)
                      |.+++|+|+++ +|++++.||.|++|++.+++.+.+.......
T Consensus       352 v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  393 (401)
T 4aez_A          352 VLYSALSPDGR-ILSTAASDENLKFWRVYDGDHVKRPIPITKT  393 (401)
T ss_dssp             CCEEEECTTSS-EEEEECTTSEEEEEECCC-------------
T ss_pred             EEEEEECCCCC-EEEEEeCCCcEEEEECCCCccccccccccCC
Confidence            99999999999 5999999999999999999988776554443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.2e-37  Score=297.57  Aligned_cols=296  Identities=17%  Similarity=0.225  Sum_probs=228.6

Q ss_pred             CCccccccccccCCCceEE-EEEecCCcceeEEEEEecCCCCCCcee-eeeccccCCCcceeeeecCCCCCCCC---CCE
Q 010769          137 EDSEDLEDMTINPNDAVIV-CARNEDDVSHLEVYILEESDGGDPNLY-VHHHIIIPAFPLCMAWLDCPLKDREK---GNF  211 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~-~~~~~~~~~~l~v~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~w~~~~~~~s~~---~~~  211 (502)
                      .|...|.+++|+|++..++ +|+.+.....+.||.+.....  ..+. ..|    .....|+.|       +|+   +++
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~--~~~~~~~~----~~~v~~~~~-------~~~~~~~~~   82 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL--KLLREIEK----AKPIKCGTF-------GATSLQQRY   82 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE--EEEEEEEE----SSCEEEEEC-------TTCCTTTCC
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc--cceeeecc----cCcEEEEEE-------cCCCCCCce
Confidence            4888999999999996555 554411123677777765432  0111 123    233477777       565   799


Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEe------cCCCCcEEEEE
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW------NKEFRNILASA  285 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------~~~~~~~l~sg  285 (502)
                      |++|+.+|.|++|++....                          .....+.+|...|.++.|      +|+ +.+|++|
T Consensus        83 l~~~~~dg~i~iwd~~~~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~  135 (357)
T 3i2n_A           83 LATGDFGGNLHIWNLEAPE--------------------------MPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTG  135 (357)
T ss_dssp             EEEEETTSCEEEECTTSCS--------------------------SCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEE
T ss_pred             EEEecCCCeEEEEeCCCCC--------------------------ccEEEEEecccceEEEeeccccccCCC-ccEEEEE
Confidence            9999999999999997532                          122345579999999955      667 5699999


Q ss_pred             ecCCcEEEEECCCCe-eeEEeccCCC----CeEEEE----EcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeE
Q 010769          286 SADKQVKIWDVAAGK-CNLTLEHHTD----KVQAVA----WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVE  356 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~-~~~~~~~h~~----~v~~l~----~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  356 (502)
                      +.||.|++||+.+++ ++..+..|..    .|.++.    |+|++ .+|++++.||.|++||+++..... ...+...+.
T Consensus       136 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~  213 (357)
T 3i2n_A          136 SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVC  213 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEE-EEECSSCEE
T ss_pred             eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceee-ecCCCCceE
Confidence            999999999999887 6777766554    899998    67888 899999999999999999877633 567788999


Q ss_pred             EEEeCC---CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE-----EEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769          357 SLAWDP---HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-----TLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       357 ~v~~~p---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      +++|+|   ++. ++++++.+|.|++||+++.         .+..     .+..|...|++++|+|+++.+|++++.||.
T Consensus       214 ~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  283 (357)
T 3i2n_A          214 SLEFDRKDISMN-KLVATSLEGKFHVFDMRTQ---------HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG  283 (357)
T ss_dssp             EEEESCSSSSCC-EEEEEESTTEEEEEEEEEE---------ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             EEEcCCCCCCCC-EEEEECCCCeEEEEeCcCC---------CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence            999999   554 8999999999999999876         3333     334899999999999998448999999999


Q ss_pred             EEEEECCCCCe-----------------eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          429 VKLWDLSNNQP-----------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       429 i~vwd~~~~~~-----------------~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      |++||++....                 ..+..+..|.+.|++++|+|++++++++++.||.|+||++.+...
T Consensus       284 i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             EEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            99999986432                 357778889999999999999997444899999999999987654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3e-36  Score=316.10  Aligned_cols=299  Identities=15%  Similarity=0.154  Sum_probs=237.0

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|+|++||+|+.++   .++||............+..|    .....+++|       +|++++||++
T Consensus        56 ~~h~~~v~~~~~spdg~~lasg~~d~---~v~lWd~~~~~~~~~~~~~~~----~~~v~~v~f-------s~dg~~l~~~  121 (611)
T 1nr0_A           56 TEHSHQTTVAKTSPSGYYCASGDVHG---NVRIWDTTQTTHILKTTIPVF----SGPVKDISW-------DSESKRIAAV  121 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---EEEEEESSSTTCCEEEEEECS----SSCEEEEEE-------CTTSCEEEEE
T ss_pred             cCCCCceEEEEECCCCcEEEEEeCCC---CEEEeECCCCcceeeEeeccc----CCceEEEEE-------CCCCCEEEEE
Confidence            35888999999999999999999887   567776543322000011112    223467777       8999999998


Q ss_pred             cCC----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769          216 SME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       216 ~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v  291 (502)
                      +.+    +.|++|+...                             ....+.+|...|++++|+|++..+|++|+.|++|
T Consensus       122 ~~~~~~~~~v~~wd~~~-----------------------------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v  172 (611)
T 1nr0_A          122 GEGRERFGHVFLFDTGT-----------------------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV  172 (611)
T ss_dssp             ECCSSCSEEEEETTTCC-----------------------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             ECCCCceeEEEEeeCCC-----------------------------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeE
Confidence            865    4788887531                             1123458999999999999966679999999999


Q ss_pred             EEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-------eecCCeEEEEeCCCC
Q 010769          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAWDPHA  364 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~v~~~p~~  364 (502)
                      ++||..+++++.++.+|...|.+++|+|++ .+|++|+.|++|++||++++.......       .|...|.+++|+|++
T Consensus       173 ~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg  251 (611)
T 1nr0_A          173 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG  251 (611)
T ss_dssp             EEEETTTBEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             EEEECCCCeEeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC
Confidence            999999999999999999999999999999 899999999999999998876544331       588899999999987


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCC----------------------------------CCCCccEEEecCCCCeeEE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDS----------------------------------TSQQSSFTLHAHDKAVCTI  410 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------------------------~~~~~~~~~~~h~~~v~~l  410 (502)
                      . +|++++.|++|++||++++......                                  ....+...+.+|...|+++
T Consensus       252 ~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l  330 (611)
T 1nr0_A          252 T-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITAL  330 (611)
T ss_dssp             S-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             C-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEE
Confidence            6 8999999999999999875321000                                  0011234556899999999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe-cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          411 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      +|+|++ .+|++++.|++|++||+.++..  ...+ ..|...|.+++|++++.  |++++.|+.+++|++.++..
T Consensus       331 ~~spdg-~~l~s~s~D~~v~~Wd~~~~~~--~~~~~~~h~~~v~~~~~s~~~~--l~s~s~d~~v~~w~~~~~~~  400 (611)
T 1nr0_A          331 SSSADG-KTLFSADAEGHINSWDISTGIS--NRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLKVVPAGGSGV  400 (611)
T ss_dssp             EECTTS-SEEEEEETTSCEEEEETTTCCE--EECSSCSCSSCEEEEEECTTSC--EEEEETTTEEEEECSSSSSS
T ss_pred             EEeCCC-CEEEEEeCCCcEEEEECCCCce--eeecccCCcceEEEEEECCCCc--EEEEEcCCceEEeecCCccc
Confidence            999998 9999999999999999998873  3333 56889999999998874  78899999999999877543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.6e-37  Score=299.46  Aligned_cols=306  Identities=15%  Similarity=0.199  Sum_probs=235.9

Q ss_pred             CCCccccccccccCC----CceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010769          136 DEDSEDLEDMTINPN----DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~----~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~  211 (502)
                      +.|...|.+++|+|+    ..++++++.++   .+.||.+..... ...+..|..........+++|.+-   ..+++++
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~---~v~vw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~   87 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSN---RVTLYECHSQGE-IRLLQSYVDADADENFYTCAWTYD---SNTSHPL   87 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETT---EEEEEEECGGGC-EEEEEEEECSCTTCCEEEEEEEEC---TTTCCEE
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCC---EEEEEEcCCCcE-EEeeeeccccCCCCcEEEEEeccC---CCCCCCE
Confidence            358899999999994    55666666665   567777764432 112223333223345578888421   1122789


Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v  291 (502)
                      |++|+.||.|+||++....                           ....+.+|...|.+++|+|..+.+|++|+.||+|
T Consensus        88 l~~~~~dg~i~v~d~~~~~---------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i  140 (366)
T 3k26_A           88 LAVAGSRGIIRIINPITMQ---------------------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL  140 (366)
T ss_dssp             EEEEETTCEEEEECTTTCC---------------------------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             EEEecCCCEEEEEEchhce---------------------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence            9999999999999987532                           2223457999999999999437799999999999


Q ss_pred             EEEECCCCeeeEEe---ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-------------------
Q 010769          292 KIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------------------  349 (502)
Q Consensus       292 ~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------  349 (502)
                      ++||+.+++.+..+   ..|...|.+++|+|++ .+|++++.||.|++||+++........                   
T Consensus       141 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          141 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             EEEETTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             EEEEeecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            99999999999888   6899999999999998 899999999999999998754332111                   


Q ss_pred             ---------eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC-----CCCCCccEEEecCCCCeeEEEEcCC
Q 010769          350 ---------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-----STSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       350 ---------~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                               .+...|.+++|+  + .++++++.+|.|++||+++......     ......+..+..|...|++++|+|+
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  296 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMD  296 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEEC
T ss_pred             ccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCC
Confidence                     177889999998  3 3899999999999999987632100     0011346777889999999999998


Q ss_pred             --CCCEEEEEeCCCcEEEEECCCCCee--EEEEecCC--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          416 --VPNLLATGSTDKMVKLWDLSNNQPS--CIASRNPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       416 --~~~~l~t~s~dg~i~vwd~~~~~~~--~~~~~~~~--~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                        + .+|++|+.||.|++||+.++++.  ....+..|  ...|++++|+|+++ +|++++.||.|++||+.+
T Consensus       297 ~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          297 FWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             TTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             CCC-cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEecC
Confidence              7 99999999999999999987642  34455666  78999999999999 599999999999999853

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.9e-36  Score=293.02  Aligned_cols=250  Identities=21%  Similarity=0.298  Sum_probs=215.7

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .++.|       +|++++|++|+.||.|+|||+.....                           ...+..|...|.+++
T Consensus        59 ~~~~~-------s~d~~~l~s~s~Dg~v~iWd~~~~~~---------------------------~~~~~~~~~~v~~~~  104 (340)
T 1got_B           59 YAMHW-------GTDSRLLLSASQDGKLIIWDSYTTNK---------------------------VHAIPLRSSWVMTCA  104 (340)
T ss_dssp             EEEEE-------CTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEECSSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEeCCCcEEEEECCCCCc---------------------------ceEeecCCccEEEEE
Confidence            67777       78999999999999999999875322                           223346889999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCC----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  349 (502)
                      |+|+ +.+|++|+.|+.|++|++.++    +....+.+|...|.++.|++++  .+++++.|++|++||++++.......
T Consensus       105 ~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~  181 (340)
T 1got_B          105 YAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             ECTT-SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ECCC-CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEc
Confidence            9999 569999999999999999875    4566788999999999999876  58999999999999999887776666


Q ss_pred             eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      .|...|.+++|+|++. ++++|+.||.|++||+++.         .+...+.+|...|++++|+|++ .+|++|+.|++|
T Consensus       182 ~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v  250 (340)
T 1got_B          182 GHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREG---------MCRQTFTGHESDINAICFFPNG-NAFATGSDDATC  250 (340)
T ss_dssp             CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred             CCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCC---------eeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcE
Confidence            7889999999999865 8999999999999999986         6788899999999999999998 999999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      ++||++..+.........+...|.+++|+|+++ +|++|+.||.|++||+.++..+..+.+|.
T Consensus       251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h~  312 (340)
T 1got_B          251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             EEEETTTTEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEECCCCcEEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEeecCC
Confidence            999999887544444444556899999999999 59999999999999999988877665543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-35  Score=286.27  Aligned_cols=288  Identities=16%  Similarity=0.294  Sum_probs=236.2

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.+++|+|++++|++++ ++   .+.+|.+....... .+.............++.|       +|++++|++|+
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-dg---~i~iw~~~~~~~~~-~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~  116 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-KG---CVKVWDISHPGNKS-PVSQLDCLNRDNYIRSCKL-------LPDGCTLIVGG  116 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BS---EEEEEETTSTTCCS-CSEEEECSCTTSBEEEEEE-------CTTSSEEEEEE
T ss_pred             cCCCceEEEEEecCCcEEEEcC-CC---eEEEEECCCCCcee-eeecccccCCCCcEEEEEE-------cCCCCEEEEEc
Confidence            4788999999999999999998 65   56666655433211 1111110112233467777       78999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .+|.|++|++....                         ......+..|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus       117 ~d~~i~~~d~~~~~-------------------------~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A          117 EASTLSIWDLAAPT-------------------------PRIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             SSSEEEEEECCCC---------------------------EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEECCCCC-------------------------cceeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeC
Confidence            99999999997532                         1122344578899999999998 669999999999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      .+++.+..+..|...|.+++|+|++ .+|++++.||.|++||+++.+... ...+...+.+++|+|++. ++++++.+|.
T Consensus       171 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~~v~~~~~s~~~~-~l~~~~~~~~  247 (337)
T 1gxr_A          171 HNQTLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQ-QHDFTSQIFSLGYCPTGE-WLAVGMESSN  247 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             CCCceeeeeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceEe-eecCCCceEEEEECCCCC-EEEEEcCCCc
Confidence            9999999999999999999999998 899999999999999999876554 456788899999999875 8999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEE
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      |++||+++.          ....+..|...|.+++|+|++ .+|++++.||.|++|++.+++..  . ...|...|.+++
T Consensus       248 i~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~--~-~~~~~~~v~~~~  313 (337)
T 1gxr_A          248 VEVLHVNKP----------DKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASI--F-QSKESSSVLSCD  313 (337)
T ss_dssp             EEEEETTSS----------CEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE--E-EEECSSCEEEEE
T ss_pred             EEEEECCCC----------CeEEEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeEE--E-EecCCCcEEEEE
Confidence            999999875          245678899999999999998 89999999999999999998743  2 234678899999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECC
Q 010769          457 FSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       457 ~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      |+|+++ +|++++.||.|++|++.
T Consensus       314 ~s~~~~-~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          314 ISVDDK-YIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ECTTSC-EEEEEETTSCEEEEEEE
T ss_pred             ECCCCC-EEEEecCCCeEEEEEEe
Confidence            999999 58899999999999973

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-37  Score=305.36  Aligned_cols=306  Identities=19%  Similarity=0.254  Sum_probs=241.0

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCC-CCEEEEe
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~-~~~la~g  215 (502)
                      .|...|.+++|+|++++|++|+.++   .+.+|.+.........+.  .-........|+.|       +|+ +++|++|
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg---~v~vw~~~~~~~~~~~~~--~~~~h~~~v~~~~~-------~~~~~~~l~s~  132 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNG---SLELYSTNEANNAINSMA--RFSNHSSSVKTVKF-------NAKQDNVLASG  132 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSS---CEEEECCSSTTSCCCEEE--ECCCSSSCCCEEEE-------CSSSTTBEEEE
T ss_pred             ecCCceEEEEECCCCCeEEEEccCC---eEEEeecccccccccchh--hccCCccceEEEEE-------cCCCCCEEEEE
Confidence            4778999999999999999999887   567776655221110111  11112233467777       677 8999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.||.|++||+.........                  ..........+|...|.+++|+|+++.+|++|+.||.|++||
T Consensus       133 ~~dg~v~iwd~~~~~~~~~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  194 (416)
T 2pm9_A          133 GNNGEIFIWDMNKCTESPSN------------------YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD  194 (416)
T ss_dssp             CSSSCEEBCBTTTTSSCTTT------------------CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred             cCCCeEEEEECCCCcccccc------------------ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence            99999999999764311000                  001111234579999999999999778999999999999999


Q ss_pred             CCCCeeeEEeccC------CCCeEEEEEcCCCCcEEEEEECCC---cEEEEeCCCCC-CccceE-eecCCeEEEEeCCCC
Q 010769          296 VAAGKCNLTLEHH------TDKVQAVAWNHHSPQILLSGSFDR---SVVMKDARIST-HSGFKW-AVAADVESLAWDPHA  364 (502)
Q Consensus       296 ~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~~~~-~~~~~~-~~~~~v~~v~~~p~~  364 (502)
                      +.+++++..+..|      ...|.+++|+|++..+|++++.++   .|++||+++.. ...... .|...|.+++|+|.+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (416)
T 2pm9_A          195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD  274 (416)
T ss_dssp             TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC
T ss_pred             CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC
Confidence            9999999988776      789999999999878999999999   99999999864 444444 688999999999944


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE--
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI--  442 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~--  442 (502)
                      ..++++++.||.|++||+++.         .++..+..|...|.+++|+|+++.+|++++.|+.|++|++........  
T Consensus       275 ~~~l~s~~~dg~v~~wd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~  345 (416)
T 2pm9_A          275 EHLLLSSGRDNTVLLWNPESA---------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQ  345 (416)
T ss_dssp             SSCEEEEESSSEEEEECSSSC---------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-
T ss_pred             CCeEEEEeCCCCEEEeeCCCC---------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccc
Confidence            558999999999999999986         778889999999999999999878999999999999999987652111  


Q ss_pred             -------------EEe------------------cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          443 -------------ASR------------------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       443 -------------~~~------------------~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                                   ...                  ..|..++.+++|+|+|+ +|++|+.||.|+||++.+.
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          346 ETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-LVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ---------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-EECBCTTSSCBCCBCCCCC
T ss_pred             cccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe-EEEEeCCCCeEEEEEeccC
Confidence                         000                  11567788999999999 5999999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.4e-36  Score=312.71  Aligned_cols=278  Identities=24%  Similarity=0.381  Sum_probs=231.4

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|++++|++++.++   .+++|..+....  ..+..|     ...+.+++|       +|++++|++|
T Consensus       300 ~~h~~~v~~~~~~~~~~~l~t~~~d~---~i~~w~~~~~~~--~~~~~~-----~~~v~~~~~-------s~~g~~l~~~  362 (577)
T 2ymu_A          300 TGHSSSVWGVAFSPDGQTIASASDDK---TVKLWNRNGQHL--QTLTGH-----SSSVWGVAF-------SPDGQTIASA  362 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSCEE--EEECCC-----SSCEEEEEE-------CTTSSEEEEE
T ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCC---eEEEEeCCCCee--EEEeCC-----CCCEEEEEE-------CCCCCEEEEE
Confidence            34778999999999999999999887   566765432211  111112     222356655       7999999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.+|.|++|+...                            .....+.+|...|.+++|+|+ +.+|++++.|+.|++||
T Consensus       363 ~~dg~v~~~~~~~----------------------------~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~v~~~~  413 (577)
T 2ymu_A          363 SDDKTVKLWNRNG----------------------------QLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWN  413 (577)
T ss_dssp             ETTSEEEEEETTC----------------------------CEEEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEEC
T ss_pred             eCCCEEEEEcCCC----------------------------CEEEEecCCCCCeEEEEECCC-CCEEEEEeCCCEEEEEe
Confidence            9999999999642                            122234579999999999999 56899999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      . +++.+..+.+|...|++++|+|++ .+|++++.|+.|++||... +.......|...|.+++|+|++. ++++++.|+
T Consensus       414 ~-~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~-~las~~~d~  489 (577)
T 2ymu_A          414 R-NGQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDK  489 (577)
T ss_dssp             T-TCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSC-EEEEEETTS
T ss_pred             C-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCC
Confidence            5 577888899999999999999999 8999999999999999753 44445667889999999999876 899999999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      .|++||.. +         ..+..+.+|...|++++|+|++ ++|++++.|+.|+|||.. ++  ++..+.+|.+.|+++
T Consensus       490 ~i~iw~~~-~---------~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~-~~--~~~~~~~h~~~v~~~  555 (577)
T 2ymu_A          490 TVKLWNRN-G---------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVWGV  555 (577)
T ss_dssp             EEEEEETT-S---------CEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-SC--EEEEEECCSSCEEEE
T ss_pred             EEEEEcCC-C---------CEEEEEeCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeCC-CC--EEEEEcCCCCCEEEE
Confidence            99999954 2         6788899999999999999998 899999999999999964 44  567788999999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEE
Q 010769          456 AFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       456 ~~spd~~~llasg~~dg~i~vwd  478 (502)
                      +|+|++++ |++++.|++|++||
T Consensus       556 ~fs~dg~~-l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          556 AFSPDGQT-IASASSDKTVKLWN  577 (577)
T ss_dssp             EECTTSSC-EEEEETTSCEEEEC
T ss_pred             EEcCCCCE-EEEEeCCCEEEEeC
Confidence            99999995 88999999999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-36  Score=297.69  Aligned_cols=252  Identities=19%  Similarity=0.214  Sum_probs=203.1

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecC------CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccc
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSM------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD  267 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~------dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  267 (502)
                      .|++|       ||+|++||+|+.      |+.|++|+.......                       ........+|..
T Consensus        46 ~~v~f-------SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-----------------------~~~~~~~~~~~~   95 (357)
T 4g56_B           46 GAVRY-------RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-----------------------ESLCTAGVQTEA   95 (357)
T ss_dssp             EEEEE-------CSSSCEEEEEECSSSSSCCEEEEEESSCC---C-----------------------GGGCSEEEECSS
T ss_pred             EEEEE-------CCCCCEEEEEcCCCCccccCeEEEEECCCCCcc-----------------------eeEecccCCCCC
Confidence            56666       899999999997      678889987643221                       112223346889


Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeE----EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL----TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  343 (502)
                      .|++++|+|+ + .+++++.||+|+|||+.+++...    ...+|...|++++|+|++ ++|++|+.|++|++||+++++
T Consensus        96 ~V~~~~~s~d-~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~  172 (357)
T 4g56_B           96 GVTDVAWVSE-K-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKA  172 (357)
T ss_dssp             CEEEEEEETT-T-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTE
T ss_pred             CEEEEEEcCC-C-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCc
Confidence            9999999998 4 56678899999999999886543    335799999999999999 899999999999999999988


Q ss_pred             CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE
Q 010769          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .......|...|.+++|+|++..++++++.||.|++||++++..       ........|...+++++|+|+++.+|++|
T Consensus       173 ~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~-------~~~~~~~~~~~~v~~v~~sp~~~~~la~g  245 (357)
T 4g56_B          173 VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP-------ATRIDFCASDTIPTSVTWHPEKDDTFACG  245 (357)
T ss_dssp             EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC-------BCBCCCTTCCSCEEEEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce-------eeeeeeccccccccchhhhhcccceEEEe
Confidence            77766678899999999998877899999999999999998732       22233456778899999999877899999


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +.|+.|++||+++++  ++..+..|...|++++|+|++..+||+|+.||+|+|||+.+++.++.
T Consensus       246 ~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          246 DETGNVSLVNIKNPD--SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             ESSSCEEEEESSCGG--GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             ecccceeEEECCCCc--EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence            999999999999887  46677889999999999999865799999999999999999877653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.6e-36  Score=290.41  Aligned_cols=251  Identities=18%  Similarity=0.231  Sum_probs=203.2

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      ++..|.+++|+|++ .|++|+.++   .++||.++.....  ...............|++|       +|+|++||+|+.
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s~dg---~v~lWd~~~~~~~--~~~~~~~~~H~~~V~~v~~-------spdg~~l~sgs~  147 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVASDSG---AVELWELDENETL--IVSKFCKYEHDDIVSTVSV-------LSSGTQAVSGSK  147 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEETTS---EEEEEEECTTSSC--EEEEEEEECCSSCEEEEEE-------CTTSSEEEEEET
T ss_pred             cCCCEEEEEEeCCC-eEEEEECCC---EEEEEeccCCCce--eEeeccccCCCCCEEEEEE-------CCCCCEEEEEeC
Confidence            45679999999986 566777776   6788877665431  1111100011223367777       799999999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      |+.|+|||+.++                           .....+.+|...|++++|+|++..+|++|+.|++|++||++
T Consensus       148 d~~i~iwd~~~~---------------------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~  200 (344)
T 4gqb_B          148 DICIKVWDLAQQ---------------------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR  200 (344)
T ss_dssp             TSCEEEEETTTT---------------------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CCeEEEEECCCC---------------------------cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccc
Confidence            999999999753                           23335568999999999999977899999999999999999


Q ss_pred             CCeeeEEec--cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          298 AGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       298 ~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      ++++...+.  .|...+.+++|+|.+..+|++|+.||+|++||+++++....+..|...|.+++|+|++..+|++|+.||
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~  280 (344)
T 4gqb_B          201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC  280 (344)
T ss_dssp             SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence            999888774  456689999999988789999999999999999999888777889999999999999877899999999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      +|++||++++          .+..+.+|...|++++|+|+++.+|++|+.|++|++|++.+..
T Consensus       281 ~i~vwd~~~~----------~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          281 SLAVLDSSLS----------ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CEEEECTTCC----------EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             eEEEEECCCC----------cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            9999999875          3456789999999999999987789999999999999998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-35  Score=282.30  Aligned_cols=249  Identities=23%  Similarity=0.333  Sum_probs=203.0

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|+|++||+|+.|+.|+||++....                         ......+.+|...|++++
T Consensus        13 ~~~~~-------s~~g~~las~s~D~~v~iw~~~~~~-------------------------~~~~~~l~gH~~~V~~v~   60 (297)
T 2pm7_B           13 HDAVM-------DYYGKRMATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHEGPVWRVD   60 (297)
T ss_dssp             EEEEE-------CTTSSEEEEEETTSCEEEEEBCSSC-------------------------BCCCEEECCCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEeCCCEEEEEecCCCC-------------------------cEEEEEEccccCCeEEEE
Confidence            56666       7999999999999999999986321                         122335568999999999


Q ss_pred             ecCC-CCcEEEEEecCCcEEEEECCCCe--eeEEeccCCCCeEEEEEcCC--CCcEEEEEECCCcEEEEeCCCCCC--cc
Q 010769          274 WNKE-FRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTH--SG  346 (502)
Q Consensus       274 ~~~~-~~~~l~sgs~Dg~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~--~~  346 (502)
                      |++. .+.+|++|+.|++|+|||+.+++  .+..+.+|...|.+++|+|+  + .+|++++.|++|++||++....  ..
T Consensus        61 ~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~  139 (297)
T 2pm7_B           61 WAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPI  139 (297)
T ss_dssp             ECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred             ecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeee
Confidence            9863 25699999999999999999874  56677889999999999997  5 7999999999999999987642  23


Q ss_pred             ceEeecCCeEEEEeCCCC------------CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769          347 FKWAVAADVESLAWDPHA------------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~~------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      ....|...|.+++|+|.+            ..+|++|+.|+.|++||+++....     ......+.+|...|.+++|+|
T Consensus       140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-----~~~~~~l~~H~~~V~~v~~sp  214 (297)
T 2pm7_B          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSP  214 (297)
T ss_dssp             EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECC
T ss_pred             eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce-----EEEEEEecCCCCceEEEEECC
Confidence            345678899999999963            358999999999999999875210     014567889999999999999


Q ss_pred             CC--CCEEEEEeCCCcEEEEECCCCCe-eEEEEe--cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          415 LV--PNLLATGSTDKMVKLWDLSNNQP-SCIASR--NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       415 ~~--~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~--~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ++  +.+|++++.|++|+|||+..... .....+  ..|...|.+++|+|++++ ||+++.||.|+||+...
T Consensus       215 ~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-EEEEETTSCEEEEEECT
T ss_pred             CCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE-EEEEcCCCcEEEEEECC
Confidence            85  48999999999999999987431 112222  567889999999999994 99999999999999863

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.2e-35  Score=288.29  Aligned_cols=252  Identities=21%  Similarity=0.313  Sum_probs=216.2

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||+|+|||......                           ...+..|...|.+++
T Consensus        68 ~~~~~-------s~d~~~l~s~s~Dg~v~vWd~~~~~~---------------------------~~~~~~~~~~v~~~~  113 (354)
T 2pbi_B           68 LCMDW-------CKDKRRIVSSSQDGKVIVWDSFTTNK---------------------------EHAVTMPCTWVMACA  113 (354)
T ss_dssp             EEEEE-------CTTSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECSSSCCCEEE
T ss_pred             EEEEE-------CCCCCEEEEEeCCCeEEEEECCCCCc---------------------------ceEEecCCCCEEEEE
Confidence            68888       78999999999999999999864321                           122345788999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCC------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAG------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  347 (502)
                      |+|+ +.+|++|+.|+.+++|++...      .....+.+|...|.+++|+|++ ..|++++.|++|++||+++++....
T Consensus       114 ~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~  191 (354)
T 2pbi_B          114 YAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQS  191 (354)
T ss_dssp             ECTT-SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ECCC-CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEE
Confidence            9999 569999999999999998643      3456677899999999999998 8899999999999999999887776


Q ss_pred             eEeecCCeEEEEeCCCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCC
Q 010769          348 KWAVAADVESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      ...|...|.+++|+|.. ..+|++|+.||.|++||++++         .++..+..|...|++++|+|++ .+|++|+.|
T Consensus       192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D  261 (354)
T 2pbi_B          192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---------QCVQAFETHESDVNSVRYYPSG-DAFASGSDD  261 (354)
T ss_dssp             EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCeEEEEEeCCC-CEEEEEeCC
Confidence            77888999999999853 358999999999999999986         6788889999999999999998 899999999


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      ++|++||++..+.........+...+.+++|+|++. +|++|+.|+.|++||+.++..+..+.+|.
T Consensus       262 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~  326 (354)
T 2pbi_B          262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHE  326 (354)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred             CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCC
Confidence            999999999887544444444556799999999999 59999999999999999998877666554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.5e-36  Score=300.74  Aligned_cols=286  Identities=16%  Similarity=0.183  Sum_probs=221.9

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..+.+++|+|++++|++|+.++   .+.+|.+.....  ......|.     . .++.+      +++++++||+|+.+|
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~---~v~i~d~~~~~~--~~~~~~~~-----~-~~~~~------~~~~~~~l~~~~~dg  119 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDG---HDFLFNTIIRDG--SKMLKRAD-----Y-TAVDT------AKLQMRRFILGTTEG  119 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETT---EEEEEECCSEET--TTTSCSCC-----E-EEEEE------ECSSSCEEEEEETTS
T ss_pred             ccccceeeeecCCeEEEEEcCC---cEEEEEecccce--eeEEecCC-----c-eEEEE------EecCCCEEEEEECCC
Confidence            4567899999999999999987   445555443321  11111111     1 22222      178999999999999


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .|+||++...                           .....+.+|...|++++|+|+ +.+|++|+.|++|++||+.++
T Consensus       120 ~i~iwd~~~~---------------------------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~  171 (420)
T 3vl1_A          120 DIKVLDSNFN---------------------------LQREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDG  171 (420)
T ss_dssp             CEEEECTTSC---------------------------EEEEETTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTC
T ss_pred             CEEEEeCCCc---------------------------ceeeecccccCccEEEEECCC-CCEEEEEeCCCeEEEEeCCCC
Confidence            9999998642                           222344589999999999999 569999999999999999999


Q ss_pred             eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe---ec---------------------CCe
Q 010769          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VA---------------------ADV  355 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~---------------------~~v  355 (502)
                      +.+..+.+|...|.+++|+|++ .+|++++.||.|++||+++++.......   +.                     ..+
T Consensus       172 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          172 SNPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             CCCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             cCceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            9999999999999999999998 8999999999999999998765443322   22                     345


Q ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769          356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      .+++|+|++. ++++|+.+|.|++||+++.         ..+..+ ..|...|++++|+|++..+|++|+.||.|++||+
T Consensus       251 ~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~  320 (420)
T 3vl1_A          251 NNLEFGTYGK-YVIAGHVSGVITVHNVFSK---------EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL  320 (420)
T ss_dssp             CTTCSSCTTE-EEEEEETTSCEEEEETTTC---------CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             cceEEcCCCC-EEEEEcCCCeEEEEECCCC---------ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence            5556678664 8999999999999999987         344444 4688999999999998449999999999999999


Q ss_pred             CCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          435 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       435 ~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ++++.........|...|.++.|. ++. +|++++.||.|++|++....
T Consensus       321 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          321 RSPECPVGEFLINEGTPINNVYFA-AGA-LFVSSGFDTSIKLDIISDPE  367 (420)
T ss_dssp             TCTTSCSEEEEESTTSCEEEEEEE-TTE-EEEEETTTEEEEEEEECCTT
T ss_pred             CCCcCchhhhhccCCCCceEEEeC-CCC-EEEEecCCccEEEEeccCCC
Confidence            987532222223367788888665 666 59999999999999998743

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-36  Score=297.94  Aligned_cols=290  Identities=16%  Similarity=0.285  Sum_probs=236.7

Q ss_pred             CccccccccccCCCc-eEEEEEecCCcceeEEEEE----ecCCCC---CCceeeeeccc-------cCCCcceeeeecCC
Q 010769          138 DSEDLEDMTINPNDA-VIVCARNEDDVSHLEVYIL----EESDGG---DPNLYVHHHII-------IPAFPLCMAWLDCP  202 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~----~~~~~~---~~~l~~~~~~~-------~~~~~~~~~w~~~~  202 (502)
                      |...|.+++|+|+++ +|++|+.++   .+.+|.+    ......   .......+...       ......|++|    
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----  116 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGEKNS---VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW----  116 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEETBT---EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE----
T ss_pred             ccCceEEEEECCCCCcEEEEecCCc---eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE----
Confidence            557899999999999 999999876   6677777    433200   00111111000       1223467777    


Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                         +|++++|++|+.+|.|+||+..                            ......+.+|...|.+++|+|+ +.+|
T Consensus       117 ---s~~~~~l~~~~~dg~i~i~~~~----------------------------~~~~~~~~~~~~~v~~~~~~~~-~~~l  164 (425)
T 1r5m_A          117 ---SHDGNSIVTGVENGELRLWNKT----------------------------GALLNVLNFHRAPIVSVKWNKD-GTHI  164 (425)
T ss_dssp             ---CTTSSEEEEEETTSCEEEEETT----------------------------SCEEEEECCCCSCEEEEEECTT-SSEE
T ss_pred             ---cCCCCEEEEEeCCCeEEEEeCC----------------------------CCeeeeccCCCccEEEEEECCC-CCEE
Confidence               7899999999999999999943                            1222344579999999999999 5699


Q ss_pred             EEEecCCcEEEEECCCCeeeEEeccCCCC---------------eEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769          283 ASASADKQVKIWDVAAGKCNLTLEHHTDK---------------VQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~---------------v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  347 (502)
                      ++++.|+.|++||+.+++.+..+..+...               +.++.|++++  .+++++.+|.|++||+++......
T Consensus       165 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~  242 (425)
T 1r5m_A          165 ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGK  242 (425)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEE
T ss_pred             EEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeee
Confidence            99999999999999999999999887777               9999999976  689999999999999998877766


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      ...+...|.+++|+|++. ++++++.+|.|++||+++.         ..+..+..|...|.+++|+|++  +|++++.|+
T Consensus       243 ~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~  310 (425)
T 1r5m_A          243 LIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNG---------NSQNCFYGHSQSIVSASWVGDD--KVISCSMDG  310 (425)
T ss_dssp             ECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSB---------SCSEEECCCSSCEEEEEEETTT--EEEEEETTS
T ss_pred             eccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC---------ccceEecCCCccEEEEEECCCC--EEEEEeCCC
Confidence            667889999999999876 8999999999999999986         6778888999999999999976  999999999


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      .|++||+.+++  .+..+..|...|.+++|+|++. +|++++.+|.|++|++.++.
T Consensus       311 ~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          311 SVRLWSLKQNT--LLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEEEEETTTTE--EEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHH
T ss_pred             cEEEEECCCCc--EeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc
Confidence            99999999887  5666778889999999999999 58999999999999998877

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.6e-36  Score=295.86  Aligned_cols=293  Identities=14%  Similarity=0.186  Sum_probs=232.5

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC----CceeeeeccccCCCcceeeeecCCCCCCCC---
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD----PNLYVHHHIIIPAFPLCMAWLDCPLKDREK---  208 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~---  208 (502)
                      ..|...|.+++|+|  ++|++|+.++   .+.||.+.......    ...+..|    .....|+.|       +|+   
T Consensus        13 ~~h~~~i~~~~~~~--~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~   76 (397)
T 1sq9_A           13 KAHDADIFSVSACN--SFTVSCSGDG---YLKVWDNKLLDNENPKDKSYSHFVH----KSGLHHVDV-------LQAIER   76 (397)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTS---EEEEEESBCCTTCCGGGGEEEEECC----TTCEEEEEE-------EEEEET
T ss_pred             hhhhcCeEEEEecC--CeEEEEcCCC---EEEEEECCCcccccCCCcceEEecC----CCcEEEEEE-------eccccc
Confidence            35889999999999  8999999887   55666665443100    0111122    233467877       567   


Q ss_pred             -C---CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCc-----ccceeeEEec----
Q 010769          209 -G---NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-----TDSVLGLAWN----  275 (502)
Q Consensus       209 -~---~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~~----  275 (502)
                       +   ++|++|+.||.|++|++.......                      ......+..|     ...|.+++|+    
T Consensus        77 ~g~~~~~l~s~~~dg~i~iw~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  134 (397)
T 1sq9_A           77 DAFELCLVATTSFSGDLLFYRITREDETK----------------------KVIFEKLDLLDSDMKKHSFWALKWGASND  134 (397)
T ss_dssp             TTEEEEEEEEEETTSCEEEEEEEECTTTC----------------------CEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred             CCccccEEEEEcCCCCEEEEEccCCcccc----------------------cccceeecccccccCCCcEEEEEEeeccC
Confidence             8   999999999999999987533210                      1112334456     5899999999    


Q ss_pred             CCCCcE-EEEEecCCcEEEEECCC------CeeeE-----Ee-------ccCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 010769          276 KEFRNI-LASASADKQVKIWDVAA------GKCNL-----TL-------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVM  336 (502)
Q Consensus       276 ~~~~~~-l~sgs~Dg~v~vwd~~~------~~~~~-----~~-------~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  336 (502)
                      |+ +.+ |++|+.||.|++||+.+      ++.+.     .+       ..|...|.+++|+|++  +|++++.||.|++
T Consensus       135 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i  211 (397)
T 1sq9_A          135 RL-LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQI  211 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEE
T ss_pred             CC-CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEE
Confidence            88 557 99999999999999998      66665     66       4489999999999988  8999999999999


Q ss_pred             EeCCCCCCccceEe---e---cCCeEEEEeCCCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCCCCccEEEec-----
Q 010769          337 KDARISTHSGFKWA---V---AADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHA-----  402 (502)
Q Consensus       337 wd~~~~~~~~~~~~---~---~~~v~~v~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~-----  402 (502)
                      ||+++.+.......   |   ...+.+++|+|++. +|++++.+   |.|++||+++.         .++..+..     
T Consensus       212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~---------~~~~~~~~~~~~~  281 (397)
T 1sq9_A          212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFG---------ERIGSLSVPTHSS  281 (397)
T ss_dssp             EETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTC---------CEEEEECBC----
T ss_pred             EECCCCceeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCC---------cccceeccCcccc
Confidence            99998776665555   6   88999999999865 89999999   99999999986         67778887     


Q ss_pred             --------CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec------CC---------------CCCEE
Q 010769          403 --------HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN------PK---------------AGAVF  453 (502)
Q Consensus       403 --------h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~------~~---------------~~~v~  453 (502)
                              |...|.+++|+|++ .+|++++.||.|++||+.+++.  +..+.      .|               ...|+
T Consensus       282 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~  358 (397)
T 1sq9_A          282 QASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF  358 (397)
T ss_dssp             ----CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE--EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEE
T ss_pred             cccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCce--eEEEecccCcccchhhhhccccccccccCCcee
Confidence                    99999999999998 8999999999999999998874  45555      66               89999


Q ss_pred             EEEEcCCC----------CcEEEEEeCCCcEEEEECCCCc
Q 010769          454 SVAFSEDS----------PFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       454 ~~~~spd~----------~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +++|+|++          . +|++|+.||.|++|++.+++
T Consensus       359 ~~~~~~~g~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          359 DVKFLKKGWRSGMGADLNE-SLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EEEEECTTTSBSTTCTTSC-EEEEEETTTEEEEEEEEC--
T ss_pred             EEEeccccccccccccccc-eEEEecCCCcEEEEEcCCCC
Confidence            99999998          5 69999999999999998763

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.9e-35  Score=291.86  Aligned_cols=289  Identities=13%  Similarity=0.143  Sum_probs=219.3

Q ss_pred             CCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCC-CCCEEEE
Q 010769          137 EDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMAV  214 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~-~~~~la~  214 (502)
                      .|...|.+++|+|++ ++|++|+.++   .+.||.+.....  .....  .........++.|       +| ++++|++
T Consensus        71 ~h~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~--~~~~~--~~~h~~~v~~~~~-------~~~~~~~l~s  136 (383)
T 3ei3_B           71 PFDRRVTSLEWHPTHPTTVAVGSKGG---DIILWDYDVQNK--TSFIQ--GMGPGDAITGMKF-------NQFNTNQLFV  136 (383)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEEBTS---CEEEEETTSTTC--EEEEC--CCSTTCBEEEEEE-------ETTEEEEEEE
T ss_pred             CCCCCEEEEEECCCCCCEEEEEcCCC---eEEEEeCCCccc--ceeee--cCCcCCceeEEEe-------CCCCCCEEEE
Confidence            478899999999999 9999999887   456666654332  11111  0011233367887       57 6899999


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      |+.|+.|++||+.. ...                        .......+|...|.+++|+|+ +.+|++|+.|+.|++|
T Consensus       137 ~~~d~~i~iwd~~~-~~~------------------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~  190 (383)
T 3ei3_B          137 SSIRGATTLRDFSG-SVI------------------------QVFAKTDSWDYWYCCVDVSVS-RQMLATGDSTGRLLLL  190 (383)
T ss_dssp             EETTTEEEEEETTS-CEE------------------------EEEECCCCSSCCEEEEEEETT-TTEEEEEETTSEEEEE
T ss_pred             EeCCCEEEEEECCC-Cce------------------------EEEeccCCCCCCeEEEEECCC-CCEEEEECCCCCEEEE
Confidence            99999999999973 111                        111122356788999999999 5699999999999999


Q ss_pred             ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC---ccceEeecCCeEEEEeCC-CCCCEEEE
Q 010769          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDP-HAEHSFVV  370 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~v~~~p-~~~~~l~~  370 (502)
                      |+ +++++..+..|...|.+++|+|++..+|++++.|+.|++||+++...   ......+...|.+++|+| ++. +|++
T Consensus       191 d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~~  268 (383)
T 3ei3_B          191 GL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDST-KLLT  268 (383)
T ss_dssp             ET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSC-EEEE
T ss_pred             EC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCC-EEEE
Confidence            99 57888899999999999999999944999999999999999998432   222347889999999999 765 8999


Q ss_pred             EeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-------C----------CCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------D----------KAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-------~----------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      ++.||.|++||+++..         ....+..|       .          ..+..++|+|++ .+  +++.|+.|++||
T Consensus       269 ~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd  336 (383)
T 3ei3_B          269 TDQRNEIRVYSSYDWS---------KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYD  336 (383)
T ss_dssp             EESSSEEEEEETTBTT---------SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEE
T ss_pred             EcCCCcEEEEECCCCc---------cccccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEe
Confidence            9999999999999863         33333333       2          334446666666 33  778999999999


Q ss_pred             CCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      +.+++.........|.+.+.+++|+|+++ +|++|+ ||.|+||++.+
T Consensus       337 ~~~~~~~~~l~~~~~~~~~~~~~~s~~g~-~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          337 ANSGGLVHQLRDPNAAGIISLNKFSPTGD-VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TTTCCEEEEECBTTBCSCCCEEEECTTSS-EEEEEE-TTEEEEEECC-
T ss_pred             cCCCceeeeecCCCCCceEEEEEEecCcc-EEEEec-CCcEEEEecCC
Confidence            99988533333333567788889999999 488886 89999999875

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-34  Score=280.92  Aligned_cols=295  Identities=18%  Similarity=0.282  Sum_probs=229.8

Q ss_pred             CCCccccccccccCC-CceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769          136 DEDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~-~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~  214 (502)
                      ..|.+.|++++|+|+ +++||+|+.++   +++||.+....... ......-......+.++.|       +|++++|++
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~---~i~vWd~~~~~~~~-~~~~~~l~~h~~~V~~~~~-------s~dg~~l~s  103 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDK---TIIMWKLTRDETNY-GIPQRALRGHSHFVSDVVI-------SSDGQFALS  103 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTS---CEEEEEECCSSSCS-EEEEEEECCCSSCEEEEEE-------CTTSSEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCC---eEEEEECCCCCccc-ceeeEEEeCCCCCEEEEEE-------CCCCCEEEE
Confidence            359999999999998 68999999887   67889887654311 0111100011233467777       799999999


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      |+.|+.|++|+.....                           .......+...+..+.+++. ..+|++|+.|+.+++|
T Consensus       104 ~~~d~~i~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~~~~~  155 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGT---------------------------TTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKLW  155 (340)
T ss_dssp             EETTSEEEEEETTTTE---------------------------EEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEE
T ss_pred             EcccccceEEeecccc---------------------------eeeeecCCCCceeEEEEeec-CccceeecCCCeEEEE
Confidence            9999999999986422                           12223357778889999998 5689999999999999


Q ss_pred             ECCCCee-eEEeccCCCCeEEEEEcCCCC-cEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEe
Q 010769          295 DVAAGKC-NLTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       295 d~~~~~~-~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  372 (502)
                      |+..... ...+.+|...+.+++|++.+. .++++++.|+.|++||+++.........|...|.+++|+|++. +|++|+
T Consensus       156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s  234 (340)
T 4aow_A          156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGG  234 (340)
T ss_dssp             CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred             EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC-EEEEEe
Confidence            9876654 444578999999999998753 4678999999999999999887776677889999999999875 899999


Q ss_pred             CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE-------EEEe
Q 010769          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-------IASR  445 (502)
Q Consensus       373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~-------~~~~  445 (502)
                      .||.|++||+++.         .++..+. +...|.+++|+|++  .+++++.|+.|++||++......       ....
T Consensus       235 ~Dg~i~iwd~~~~---------~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  302 (340)
T 4aow_A          235 KDGQAMLWDLNEG---------KHLYTLD-GGDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS  302 (340)
T ss_dssp             TTCEEEEEETTTT---------EEEEEEE-CSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC------
T ss_pred             CCCeEEEEEeccC---------ceeeeec-CCceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeec
Confidence            9999999999976         5666665 45689999999975  45566779999999998765321       1223


Q ss_pred             cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ..|...|++++|+|++++ |++|+.||.|+|||+.+|.
T Consensus       303 ~~h~~~v~~l~~s~dg~~-l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          303 KAEPPQCTSLAWSADGQT-LFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             -CCCCCEEEEEECTTSSE-EEEEETTSCEEEEEEEC--
T ss_pred             cCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEeCCCcC
Confidence            468889999999999994 8999999999999999886

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.8e-35  Score=304.24  Aligned_cols=291  Identities=23%  Similarity=0.346  Sum_probs=238.2

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.++.|+|++++|++++.++   .+++|.  ........+..|.     ....++++       +|++++|+++
T Consensus       259 ~~~~~~v~~v~~~~d~~~l~~~~~d~---~i~~w~--~~~~~~~~~~~h~-----~~v~~~~~-------~~~~~~l~t~  321 (577)
T 2ymu_A          259 TGHSSSVNGVAFRPDGQTIASASDDK---TVKLWN--RNGQLLQTLTGHS-----SSVWGVAF-------SPDGQTIASA  321 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---CEEEEE--TTSCEEEEECCCS-----SCEEEEEE-------CTTSSEEEEE
T ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCC---EEEEEe--CCCcEEEEEecCC-----CCeEEEEE-------CCCCCEEEEE
Confidence            34778899999999999999999887   455554  3322011111222     22355555       7999999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|+.|++|++...                            ....+.+|...|.+++|+|+ +.+|++|+.|++|++|+
T Consensus       322 ~~d~~i~~w~~~~~----------------------------~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~~~~  372 (577)
T 2ymu_A          322 SDDKTVKLWNRNGQ----------------------------HLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN  372 (577)
T ss_dssp             ETTSCEEEEETTSC----------------------------EEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEE
T ss_pred             eCCCeEEEEeCCCC----------------------------eeEEEeCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEc
Confidence            99999999998631                            11234578999999999999 56999999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      . +++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||.. .+.......|...|.+++|+|++. ++++++.|+
T Consensus       373 ~-~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~  448 (577)
T 2ymu_A          373 R-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQ-TIASASDDK  448 (577)
T ss_dssp             T-TCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             C-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCC-EEEEEcCCC
Confidence            5 578888899999999999999999 889999999999999964 444445667889999999999875 899999999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      .|++||..          ...+..+.+|...|++++|+|++ .+|++++.|+.|++||.. ++  ++..+.+|...|+++
T Consensus       449 ~v~~w~~~----------~~~~~~~~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~-~~--~~~~~~~h~~~v~~l  514 (577)
T 2ymu_A          449 TVKLWNRN----------GQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVRGV  514 (577)
T ss_dssp             EEEEEETT----------SCEEEEEECCSSCEEEEEECTTS-CEEEEEETTSEEEEEETT-SC--EEEEEECCSSCEEEE
T ss_pred             EEEEEECC----------CCEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC-CC--EEEEEeCCCCCEEEE
Confidence            99999964          26678889999999999999998 999999999999999964 44  567788899999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          456 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       456 ~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      +|+|++++ |++++.||.|+|||. +++++..+.+|.
T Consensus       515 ~~s~dg~~-l~s~~~dg~v~lwd~-~~~~~~~~~~h~  549 (577)
T 2ymu_A          515 AFSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHS  549 (577)
T ss_dssp             EECTTSSC-EEEEETTSEEEEECT-TSCEEEEEECCS
T ss_pred             EEcCCCCE-EEEEECcCEEEEEeC-CCCEEEEEcCCC
Confidence            99999995 899999999999996 667776665553

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7e-36  Score=293.16  Aligned_cols=294  Identities=14%  Similarity=0.139  Sum_probs=230.7

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      |...|.+++|+|++++|++|+.++   .+.+|............+..|    .....++.|       +|++++|++|+.
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~---~v~i~~~~~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~l~~~~~   72 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNH---EVHIYEKSGNKWVQVHELKEH----NGQVTGVDW-------APDSNRIVTCGT   72 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSS---EEEEEEEETTEEEEEEEEECC----SSCEEEEEE-------ETTTTEEEEEET
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCC---EEEEEeCCCCcEEeeeeecCC----CCcccEEEE-------eCCCCEEEEEcC
Confidence            678899999999999999998776   566666654420000112222    233467777       689999999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      ||.|++|++.....                         .....+..|...|.+++|+|+ +.+|++|+.|+.|++||+.
T Consensus        73 dg~i~vwd~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~  126 (372)
T 1k8k_C           73 DRNAYVWTLKGRTW-------------------------KPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFE  126 (372)
T ss_dssp             TSCEEEEEEETTEE-------------------------EEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEE
T ss_pred             CCeEEEEECCCCee-------------------------eeeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEec
Confidence            99999999864321                         112233468899999999999 5699999999999999998


Q ss_pred             CCee---e-EEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC------------------CCCCccceEeecCCe
Q 010769          298 AGKC---N-LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR------------------ISTHSGFKWAVAADV  355 (502)
Q Consensus       298 ~~~~---~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~v  355 (502)
                      .++.   . .....|...|.+++|+|++ .+|++++.||.|++||++                  ..........+...+
T Consensus       127 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (372)
T 1k8k_C          127 QENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV  205 (372)
T ss_dssp             TTTTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred             CCCcceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence            8762   3 3336789999999999998 899999999999999975                  233333333677889


Q ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010769          356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      .+++|+|++. ++++++.||.|++||+++.         .++..+..|..+|.+++|+|++ .+|++| .|+.|++|++.
T Consensus       206 ~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~  273 (372)
T 1k8k_C          206 HGVCFSANGS-RVAWVSHDSTVCLADADKK---------MAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYD  273 (372)
T ss_dssp             EEEEECSSSS-EEEEEETTTEEEEEEGGGT---------TEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEE
T ss_pred             EEEEECCCCC-EEEEEeCCCEEEEEECCCC---------ceeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEcc
Confidence            9999999875 8999999999999999986         7788889999999999999987 777777 89999999998


Q ss_pred             C--CCeeEE------------------------------------EEe-cCCCCCEEEEEEc-CCC---CcEEEEEeCCC
Q 010769          436 N--NQPSCI------------------------------------ASR-NPKAGAVFSVAFS-EDS---PFVLAIGGSKG  472 (502)
Q Consensus       436 ~--~~~~~~------------------------------------~~~-~~~~~~v~~~~~s-pd~---~~llasg~~dg  472 (502)
                      .  +...++                                    ..+ .+|...|++++|+ +++   . +|++|+.||
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~~Dg  352 (372)
T 1k8k_C          274 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDG  352 (372)
T ss_dssp             TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTS
T ss_pred             CcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee-eEEEecCCC
Confidence            7  321110                                    222 4889999999976 555   6 699999999


Q ss_pred             cEEEEECCCCccc
Q 010769          473 KLEIWDTLSDAGI  485 (502)
Q Consensus       473 ~i~vwd~~~~~~~  485 (502)
                      .|++|++.+++.+
T Consensus       353 ~i~~W~~~~~~~~  365 (372)
T 1k8k_C          353 GMSIWDVRSLESA  365 (372)
T ss_dssp             EEEEEEHHHHHHH
T ss_pred             ceEEEEecChhHh
Confidence            9999999886654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=303.17  Aligned_cols=311  Identities=11%  Similarity=0.080  Sum_probs=226.5

Q ss_pred             CccccccccccCCC---------ceEEEEEecC----------------CcceeEEEEEecCCCCCC--ceeeeeccccC
Q 010769          138 DSEDLEDMTINPND---------AVIVCARNED----------------DVSHLEVYILEESDGGDP--NLYVHHHIIIP  190 (502)
Q Consensus       138 ~~~~v~~~~~~p~~---------~~l~~~~~~~----------------~~~~l~v~~~~~~~~~~~--~l~~~~~~~~~  190 (502)
                      ....|.+++|+|++         ++||+|+..+                ..+.++||.++.......  ....||..   
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~---  208 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG---  208 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCC---
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCC---
Confidence            35689999999987         7888877442                124688998876542000  00233322   


Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccccee
Q 010769          191 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  270 (502)
Q Consensus       191 ~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  270 (502)
                       .+.+++|.+. ..+++++.+||+|+.||+|+||++...........                ........+.+|...|+
T Consensus       209 -~V~~v~wsp~-~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~----------------~~~~p~~~l~~h~~~v~  270 (524)
T 2j04_B          209 -EVWDLKWHEG-CHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK----------------MCEKPSLTLSLADSLIT  270 (524)
T ss_dssp             -SEEEEEECSS-CCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE----------------CCCSCSEEECCTTTCEE
T ss_pred             -cEEEEEECCC-CCCCCCCceEEEEecCCeEEEEEcCCCccccccce----------------eecCceEEEEcCCCCEE
Confidence             2367888532 01223478999999999999999975432210000                00112234568999999


Q ss_pred             eEEecCCCCcEEEEEecCCcEEEEECCCCe-eeEEeccCCCCeEEE--EEcCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769          271 GLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLEHHTDKVQAV--AWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~-~~~~~~~h~~~v~~l--~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  347 (502)
                      +++|++. . .|++|+.||+|++||+.++. +...+.+|...|.+|  .|+|++.++|++|+.|++|+|||+++.+....
T Consensus       271 sv~~s~~-~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~  348 (524)
T 2j04_B          271 TFDFLSP-T-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT  348 (524)
T ss_dssp             EEEESSS-S-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE
T ss_pred             EEEecCC-C-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc
Confidence            9999986 3 89999999999999999764 456688999999999  46676547899999999999999998776554


Q ss_pred             eEeecC--CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769          348 KWAVAA--DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       348 ~~~~~~--~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ...+..  .|.+++|+|++. .+++++.+++|++||+++.         ..+..+.+|...|++++|+|++ .+|++|+.
T Consensus       349 ~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~---------~~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~  417 (524)
T 2j04_B          349 TVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAA---------FAVHPLVSRETTITAIGVSRLH-PMVLAGSA  417 (524)
T ss_dssp             EEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCT---------TCCEEEEECSSCEEEEECCSSC-CBCEEEET
T ss_pred             cccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECccc---------ccceeeecCCCceEEEEeCCCC-CeEEEEEC
Confidence            445543  488999999876 6899999999999999986         5667888999999999999998 88999999


Q ss_pred             CCcEEEEECCCCC------------------------------------------eeEEEEecCCCCCEEEEEEcCCCC-
Q 010769          426 DKMVKLWDLSNNQ------------------------------------------PSCIASRNPKAGAVFSVAFSEDSP-  462 (502)
Q Consensus       426 dg~i~vwd~~~~~------------------------------------------~~~~~~~~~~~~~v~~~~~spd~~-  462 (502)
                      |++|++||+....                                          ..++..+.+|.+.|++++|+|+++ 
T Consensus       418 Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~  497 (524)
T 2j04_B          418 DGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAG  497 (524)
T ss_dssp             TTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTT
T ss_pred             CCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCc
Confidence            9999999853210                                          011233456788999999999963 


Q ss_pred             -cEEEEEeCCCcEEEEECCCC
Q 010769          463 -FVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       463 -~llasg~~dg~i~vwd~~~~  482 (502)
                       .+||+|+.+|.|+||++...
T Consensus       498 ~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          498 GKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             TTEEEEECTTSEEEEEECSCC
T ss_pred             cHHHHhhccCceEEEEEcccc
Confidence             26999999999999998654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.2e-35  Score=281.23  Aligned_cols=292  Identities=13%  Similarity=0.150  Sum_probs=234.6

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      +...|.+++|+|+|++++++...+..   .+|  ....    ...............|+.|       +|++++|++++ 
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~---~~~--~~~~----~~~~~~~~~h~~~v~~~~~-------~~~~~~l~~~~-   70 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDAL---IGP--GIPR----HARQINTLNHGEVVCAVTI-------SNPTRHVYTGG-   70 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSS---SST--TCCS----EEEEEEEECCSSCCCEEEE-------CSSSSEEEEEC-
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcE---ecc--ccCC----ccccceeccCCCceEEEEE-------ecCCcEEEEcC-
Confidence            45689999999999999988766521   111  1111    1111111112334477777       78999999999 


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      +|.|+||++.......+..                      .....+|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus        71 dg~i~iw~~~~~~~~~~~~----------------------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~  127 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVS----------------------QLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSE----------------------EEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECC
T ss_pred             CCeEEEEECCCCCceeeee----------------------cccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEEECC
Confidence            9999999997644322211                      1122368899999999999 5699999999999999999


Q ss_pred             CCe--eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          298 AGK--CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       298 ~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      +++  ....+..|...|.+++|+|++ .+|++++.+|.|++||+++.+.......+...+.+++|+|++. ++++++.+|
T Consensus       128 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg  205 (337)
T 1gxr_A          128 APTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDN  205 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             CCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC-EEEEEecCC
Confidence            887  667778899999999999998 8999999999999999998876665556888999999999865 899999999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      .|++||+++.         ..+..+ .|...+.+++|+|++ .+|++++.++.|++||+.+.+   ......|...|.++
T Consensus       206 ~i~~~d~~~~---------~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~  271 (337)
T 1gxr_A          206 TVRSWDLREG---------RQLQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSL  271 (337)
T ss_dssp             EEEEEETTTT---------EEEEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEE
T ss_pred             cEEEEECCCC---------ceEeee-cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEE
Confidence            9999999976         444444 478899999999998 899999999999999999886   34567888999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          456 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       456 ~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      +|+|+++ +|++++.+|.|++|++.+++.+.
T Consensus       272 ~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          272 KFAYCGK-WFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             EECTTSS-EEEEEETTSEEEEEETTTCCEEE
T ss_pred             EECCCCC-EEEEecCCCcEEEEECCCCeEEE
Confidence            9999999 58899999999999999988763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.9e-34  Score=289.44  Aligned_cols=263  Identities=19%  Similarity=0.336  Sum_probs=218.1

Q ss_pred             ccCCCcceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcc
Q 010769          188 IIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT  266 (502)
Q Consensus       188 ~~~~~~~~~~w~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~  266 (502)
                      ..+..+.+++|       +|+ +++||+|+.+|.|+||++.......                 ...........+.+|.
T Consensus       126 ~h~~~v~~l~~-------~p~~~~~lat~~~dg~V~vwd~~~~~~~~-----------------~~~~~~~~~~~~~~h~  181 (430)
T 2xyi_A          126 NHEGEVNRARY-------MPQNACVIATKTPSSDVLVFDYTKHPSKP-----------------EPSGECQPDLRLRGHQ  181 (430)
T ss_dssp             EESSCCSEEEE-------ETTEEEEEEEECSSSCEEEEEGGGSCSSC-----------------CTTCCCCCSEEEECCS
T ss_pred             cCCCcEEEEEE-------CCCCCcEEEEECCCCcEEEEECCCccccc-----------------CccccCCCcEEecCCC
Confidence            34455678887       565 7899999999999999996421110                 0001123344556899


Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCee-------eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeC
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~-------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  339 (502)
                      ..|++|+|+|++..+|++|+.||+|++|++.++..       ...+.+|...|.+++|+|.+..+|++++.||.|++||+
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~  261 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT  261 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            99999999999666999999999999999987422       45677899999999999966699999999999999999


Q ss_pred             CCCC---CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          340 RIST---HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       340 ~~~~---~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      ++..   .......+...|++++|+|++..++++|+.+|.|++||+++.        ..++..+..|...|++++|+|++
T Consensus       262 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~--------~~~~~~~~~h~~~v~~i~~sp~~  333 (430)
T 2xyi_A          262 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------KLKLHSFESHKDEIFQVQWSPHN  333 (430)
T ss_dssp             TCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT--------TSCSEEEECCSSCEEEEEECSSC
T ss_pred             CCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC--------CCCeEEeecCCCCEEEEEECCCC
Confidence            9873   344345778899999999998888999999999999999986        36788899999999999999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCC------------eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          417 PNLLATGSTDKMVKLWDLSNNQ------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~------------~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      +.+|++++.|+.|+|||+....            +..+..+.+|...|++++|+|+++++|++++.||.|+||++...
T Consensus       334 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          334 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            7789999999999999998722            24677888899999999999999978999999999999999754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.9e-36  Score=294.92  Aligned_cols=250  Identities=22%  Similarity=0.328  Sum_probs=210.5

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||+|+|||+.+..                           ....+..|...|.+++
T Consensus        70 ~~~~~-------sp~~~~l~s~s~D~~v~iWd~~~~~---------------------------~~~~~~~h~~~v~~~~  115 (380)
T 3iz6_a           70 YSLDW-------TPEKNWIVSASQDGRLIVWNALTSQ---------------------------KTHAIKLHCPWVMECA  115 (380)
T ss_dssp             EEEEE-------CTTSSCEEEEETTSEEEEEETTTTE---------------------------EEEEEECCCTTCCCCE
T ss_pred             EEEEE-------cCCCCEEEEEeCCCeEEEEECCCCc---------------------------cceEEecCCCCEEEEE
Confidence            68888       7999999999999999999986532                           2234457999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCe-------eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGK-------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      |+|+ +.+|++|+.|+.|++|++.+..       ....+.+|...|.++.|+|.+...|++|+.|++|++||++++....
T Consensus       116 ~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~  194 (380)
T 3iz6_a          116 FAPN-GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS  194 (380)
T ss_dssp             ECTT-SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred             ECCC-CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE
Confidence            9999 5699999999999999987532       3456789999999999999876789999999999999999887654


Q ss_pred             ce-----EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEE
Q 010769          347 FK-----WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       347 ~~-----~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                      ..     ..|...|.+++|++.+..+|++|+.||.|++||++..        ...+..+.+|...|++++|+|++ .+|+
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~--------~~~~~~~~~h~~~v~~v~~~p~~-~~l~  265 (380)
T 3iz6_a          195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT--------SRAVRTYHGHEGDINSVKFFPDG-QRFG  265 (380)
T ss_dssp             EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT--------CCCCEEECCCSSCCCEEEECTTS-SEEE
T ss_pred             EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC--------CcceEEECCcCCCeEEEEEecCC-CeEE
Confidence            33     3567889999998866679999999999999999865        36788899999999999999998 8999


Q ss_pred             EEeCCCcEEEEECCCCCeeEEEEecC-----CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          422 TGSTDKMVKLWDLSNNQPSCIASRNP-----KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~~~~~~~~~-----~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +|+.|++|++||+++++.........     +...|++++|+|+++ +|++|+.||.|++||+.+++.+...
T Consensus       266 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             EECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             EEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCceEEEE
Confidence            99999999999999987433332211     223489999999999 5889999999999999988876554

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-34  Score=284.03  Aligned_cols=289  Identities=13%  Similarity=0.168  Sum_probs=233.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.+++|+|++++|++|+.++   .+.||.+....  ....+..|.    ....++.|       +|++++|++++
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~--~~~~~~~h~----~~v~~~~~-------~~~~~~l~s~~   93 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCSKDS---SASVWYSLNGE--RLGTLDGHT----GTIWSIDV-------DCFTKYCVTGS   93 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEESSS---CEEEEETTTCC--EEEEECCCS----SCEEEEEE-------CTTSSEEEEEE
T ss_pred             EeeceEEEEEEcCCCCEEEEEeCCC---EEEEEeCCCch--hhhhhhhcC----CcEEEEEE-------cCCCCEEEEEe
Confidence            4888999999999999999999887   44555543322  111122222    23367777       78999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC-----CcE
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD-----KQV  291 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D-----g~v  291 (502)
                      .||.|++|++.......                           .+ .|...|.+++|+|+ +.+|++++.+     +.|
T Consensus        94 ~dg~i~iwd~~~~~~~~---------------------------~~-~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i  144 (369)
T 3zwl_B           94 ADYSIKLWDVSNGQCVA---------------------------TW-KSPVPVKRVEFSPC-GNYFLAILDNVMKNPGSI  144 (369)
T ss_dssp             TTTEEEEEETTTCCEEE---------------------------EE-ECSSCEEEEEECTT-SSEEEEEECCBTTBCCEE
T ss_pred             CCCeEEEEECCCCcEEE---------------------------Ee-ecCCCeEEEEEccC-CCEEEEecCCccCCCCEE
Confidence            99999999997533211                           12 27788999999999 5689999998     999


Q ss_pred             EEEECCCCe-----------eeEEeccCCC--CeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-CCCccceEeecCCeEE
Q 010769          292 KIWDVAAGK-----------CNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKWAVAADVES  357 (502)
Q Consensus       292 ~vwd~~~~~-----------~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~  357 (502)
                      ++||+..+.           .+..+..|..  .+.+++|+|++ .+|++++.+|.|++||+++ .........+...|.+
T Consensus       145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  223 (369)
T 3zwl_B          145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD  223 (369)
T ss_dssp             EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE
T ss_pred             EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE
Confidence            999997653           3344555666  99999999998 8999999999999999998 4545545567889999


Q ss_pred             EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC----------
Q 010769          358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----------  427 (502)
Q Consensus       358 v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg----------  427 (502)
                      ++|+|++. +|++++.+|.|++||+++.         ..+..+. +...+.+++|+|++ .++++++.++          
T Consensus       224 ~~~~~~~~-~l~~~~~d~~i~v~d~~~~---------~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~  291 (369)
T 3zwl_B          224 MQFSPDLT-YFITSSRDTNSFLVDVSTL---------QVLKKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSAN  291 (369)
T ss_dssp             EEECTTSS-EEEEEETTSEEEEEETTTC---------CEEEEEE-CSSCEEEEEECSSS-SEEEEEECCC----------
T ss_pred             EEECCCCC-EEEEecCCceEEEEECCCC---------ceeeeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecC
Confidence            99999865 8999999999999999986         5555555 78899999999998 8899988888          


Q ss_pred             ----cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          428 ----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       428 ----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                          .+++||+.+++  .+..+..|.+.|++++|+|+++ +|++++.||.|+||++.++....
T Consensus       292 ~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          292 EGKFEARFYHKIFEE--EIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             ---CEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEECHHHHTC
T ss_pred             CCcceeEEEecCCCc--chhheecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECccccchh
Confidence                89999999987  5667788999999999999999 59999999999999998766543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-34  Score=284.80  Aligned_cols=271  Identities=20%  Similarity=0.325  Sum_probs=211.5

Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccccee
Q 010769          191 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  270 (502)
Q Consensus       191 ~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  270 (502)
                      ....|++|       +|+|++||+|+ ++.++||++..+..+..   +......      ..............+...|.
T Consensus        65 ~~V~~v~f-------spdg~~la~g~-~~~v~i~~~~~g~~~~~---l~~~~~~------~~~~~~~~~~~~~~~~~~v~  127 (393)
T 1erj_A           65 SVVCCVKF-------SNDGEYLATGC-NKTTQVYRVSDGSLVAR---LSDDSAA------NKDPENLNTSSSPSSDLYIR  127 (393)
T ss_dssp             SCCCEEEE-------CTTSSEEEEEC-BSCEEEEETTTCCEEEE---ECC-----------------------CCCCBEE
T ss_pred             CEEEEEEE-------CCCCCEEEEEc-CCcEEEEEecCCCEEEE---ecCcccc------ccccccccccccCCCceeEE
Confidence            34478877       89999999987 68999999976543321   1110000      00000000111123445699


Q ss_pred             eEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe
Q 010769          271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  350 (502)
                      +++|+|+ +.+|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||++++.... ...
T Consensus       128 ~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~-~~~  204 (393)
T 1erj_A          128 SVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSL-TLS  204 (393)
T ss_dssp             EEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EEE
T ss_pred             EEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEE-EEE
Confidence            9999999 5699999999999999999999999999999999999999999 899999999999999999876544 445


Q ss_pred             ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-------ecCCCCeeEEEEcCCCCCEEEEE
Q 010769          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-------HAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      +...+.+++|+|....++++|+.||.|++||++++         ..+..+       .+|...|.+++|+|++ .+|++|
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~---------~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~  274 (393)
T 1erj_A          205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG---------FLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSG  274 (393)
T ss_dssp             CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC---------CEEEEEC------CCCSSCEEEEEECTTS-SEEEEE
T ss_pred             cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC---------cEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEE
Confidence            67789999999955569999999999999999876         334333       5799999999999998 899999


Q ss_pred             eCCCcEEEEECCCCC----------eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          424 STDKMVKLWDLSNNQ----------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       424 s~dg~i~vwd~~~~~----------~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      +.|+.|++||+++..          ..+...+.+|...|.+++|+|++.+ |++|+.||.|++||+.+++.+..+.+|.
T Consensus       275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~iwd~~~~~~~~~l~~h~  352 (393)
T 1erj_A          275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSGNPLLMLQGHR  352 (393)
T ss_dssp             ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCE-EEEEeCCCeEEEEECCCCeEEEEECCCC
Confidence            999999999997642          1245567789999999999999995 8999999999999999998876655543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.5e-35  Score=297.88  Aligned_cols=290  Identities=14%  Similarity=0.202  Sum_probs=214.1

Q ss_pred             CCccccccccccCC-CceEEEEEecCCcceeEEEEEecCCCCCCcee--eeeccccCCCcceeeeecCCCCCCC-CCCEE
Q 010769          137 EDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNLY--VHHHIIIPAFPLCMAWLDCPLKDRE-KGNFM  212 (502)
Q Consensus       137 ~~~~~v~~~~~~p~-~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~w~~~~~~~s~-~~~~l  212 (502)
                      .|+..|++|+|+|+ +++||+|+.++   .+.||.+.....  ..+.  ..|.    ....|++|       +| ++++|
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg---~i~lWd~~~~~~--~~~~~~~gH~----~~V~~l~f-------~p~~~~~l  180 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGG---DIMLWNFGIKDK--PTFIKGIGAG----GSITGLKF-------NPLNTNQF  180 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTS---CEEEECSSCCSC--CEEECCCSSS----CCCCEEEE-------CSSCTTEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCC---EEEEEECCCCCc--eeEEEccCCC----CCEEEEEE-------eCCCCCEE
Confidence            46778999999995 57899999887   567776654432  1111  1122    23378888       55 68999


Q ss_pred             EEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEE
Q 010769          213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK  292 (502)
Q Consensus       213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~  292 (502)
                      ++|+.||+|+|||+.....                         ........+...+.+++|+|+ +.+|++|+.||+|+
T Consensus       181 ~s~s~D~~v~iwd~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~  234 (435)
T 4e54_B          181 YASSMEGTTRLQDFKGNIL-------------------------RVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVI  234 (435)
T ss_dssp             EEECSSSCEEEEETTSCEE-------------------------EEEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEE
T ss_pred             EEEeCCCEEEEeeccCCce-------------------------eEEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEe
Confidence            9999999999999864210                         111112245567899999999 56999999999999


Q ss_pred             EEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc---ceEeecCCeEEEEeCCCCCCEEE
Q 010769          293 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       293 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~~l~  369 (502)
                      +||+. ++.+..+.+|...|++++|+|++..+|++|+.|+.|++||+++.....   ....|...|.+++|+|++. +|+
T Consensus       235 ~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~  312 (435)
T 4e54_B          235 LLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLL  312 (435)
T ss_dssp             EEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEE
T ss_pred             eeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeE
Confidence            99986 566778899999999999999997789999999999999998766433   2346788999999999876 899


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC------CeeEEEEcCCCCCEEEEEe------------CCCcEEE
Q 010769          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------AVCTISYNPLVPNLLATGS------------TDKMVKL  431 (502)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~------~v~~l~~sp~~~~~l~t~s------------~dg~i~v  431 (502)
                      +++.||.|++||+++.         .....+..|..      .+..+.|+|.+ .++++++            .++.|++
T Consensus       313 s~~~D~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~i  382 (435)
T 4e54_B          313 TTDQKSEIRVYSASQW---------DCPLGLIPHPHRHFQHLTPIKAAWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDV  382 (435)
T ss_dssp             EEESSSCEEEEESSSS---------SSEEEECCCCCCCCSSSCCCBCEECSSS-SCEEEECCCCTTSCCSSTTCCCCEEE
T ss_pred             EEcCCCEEEEEECCCC---------ccceEEecccccccccceeEEEEEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEE
Confidence            9999999999999986         33444443332      23344566655 4444433            3467999


Q ss_pred             EECCCCCeeEEEE-ecCCCCCEEEE-EEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          432 WDLSNNQPSCIAS-RNPKAGAVFSV-AFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       432 wd~~~~~~~~~~~-~~~~~~~v~~~-~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      ||..+++.  +.. ..+|...|.++ +|+|+|.+ |++|+ |+.|+||++.+++.
T Consensus       383 wd~~~g~~--~~~l~~~~~~~v~s~~~fspdg~~-lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          383 FDGNSGKM--MCQLYDPESSGISSLNEFNPMGDT-LASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             ECSSSCCE--EEEECCSSCCCCCCEEEECTTSSC-EEEEC-SSEEEECCCC----
T ss_pred             EECCCCcE--EEEEeCCCCCcEEEEEEECCCCCE-EEEEc-CCcEEEEECCcCee
Confidence            99999874  333 35677888887 69999994 77765 88999999988764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.5e-34  Score=308.01  Aligned_cols=286  Identities=20%  Similarity=0.320  Sum_probs=223.8

Q ss_pred             CCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCC----CceeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010769          137 EDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGD----PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~  211 (502)
                      .|.+.|.+++|+|++ ++|++|+.++   .++||.+.......    ..+..|.     ....|+.|       +|++++
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~---~i~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~-------s~~g~~  444 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDK---SIILWKLTKDDKAYGVAQRRLTGHS-----HFVEDVVL-------SSDGQF  444 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTS---EEEEEECCCSTTCSCEEEEEEECCS-----SCEEEEEE-------CTTSSE
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCC---cEEEEEccCCCcccccccceecCCC-----CcEEEEEE-------CCCCCE
Confidence            489999999999975 6888998887   67777766443210    0122222     23357766       789999


Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v  291 (502)
                      |++|+.||.|+|||+....                           ....+.+|...|++++|+|+ +.+|+||+.|++|
T Consensus       445 l~sgs~Dg~v~vwd~~~~~---------------------------~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i  496 (694)
T 3dm0_A          445 ALSGSWDGELRLWDLAAGV---------------------------STRRFVGHTKDVLSVAFSLD-NRQIVSASRDRTI  496 (694)
T ss_dssp             EEEEETTSEEEEEETTTTE---------------------------EEEEEECCSSCEEEEEECTT-SSCEEEEETTSCE
T ss_pred             EEEEeCCCcEEEEECCCCc---------------------------ceeEEeCCCCCEEEEEEeCC-CCEEEEEeCCCEE
Confidence            9999999999999997532                           22345589999999999999 5689999999999


Q ss_pred             EEEECCCCeeeEEe---ccCCCCeEEEEEcCCCC-cEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE
Q 010769          292 KIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       292 ~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  367 (502)
                      ++||+.........   .+|...|.+++|+|++. .+|++|+.|++|++||++..+.......|.+.|.+++|+|++. +
T Consensus       497 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~  575 (694)
T 3dm0_A          497 KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-L  575 (694)
T ss_dssp             EEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-E
T ss_pred             EEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-E
Confidence            99998755433322   46889999999999863 5899999999999999998877766677899999999999875 8


Q ss_pred             EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010769          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP  447 (502)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~  447 (502)
                      +++|+.||.|++||++++         ..+..+. +...|.+++|+|++ .+|++++ ++.|+|||+.++...  ..+..
T Consensus       576 l~sg~~Dg~i~iwd~~~~---------~~~~~~~-~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~~--~~~~~  641 (694)
T 3dm0_A          576 CASGGKDGVVLLWDLAEG---------KKLYSLE-ANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSIV--EDLKV  641 (694)
T ss_dssp             EEEEETTSBCEEEETTTT---------EEEECCB-CSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEEE--EEECC
T ss_pred             EEEEeCCCeEEEEECCCC---------ceEEEec-CCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCCh--hhhcc
Confidence            999999999999999986         4455444 45679999999987 7776665 566999999987632  22221


Q ss_pred             -------------------CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          448 -------------------KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       448 -------------------~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                                         +...+++++|+|+++ +|++|+.||.|+||++..
T Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          642 DLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             CCC----------------CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             ccccccccccccccccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEeccC
Confidence                               122478999999999 599999999999999853

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.7e-35  Score=284.44  Aligned_cols=247  Identities=23%  Similarity=0.394  Sum_probs=204.8

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|+|++||+|+.|+.|+||++......                        .......+|...|.+++
T Consensus        20 ~~l~~-------sp~g~~las~~~D~~i~iw~~~~~~~~------------------------~~~~~~~~h~~~v~~~~   68 (345)
T 3fm0_A           20 WFLAW-------NPAGTLLASCGGDRRIRIWGTEGDSWI------------------------CKSVLSEGHQRTVRKVA   68 (345)
T ss_dssp             EEEEE-------CTTSSCEEEEETTSCEEEEEEETTEEE------------------------EEEEECSSCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEcCCCeEEEEEcCCCcce------------------------eeeeeccccCCcEEEEE
Confidence            56776       899999999999999999998642110                        11112357999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCC--eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc---cce
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFK  348 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~  348 (502)
                      |+|+ +.+|++|+.|++|++|++..+  +++..+.+|...|.+++|+|++ ++|++|+.|++|++||++.....   ...
T Consensus        69 ~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  146 (345)
T 3fm0_A           69 WSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVL  146 (345)
T ss_dssp             ECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred             ECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence            9999 569999999999999999876  4678899999999999999998 89999999999999999876532   223


Q ss_pred             EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769          349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       349 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      ..|...|.+++|+|++. +|++++.|+.|++|+++...       ..+...+.+|...|++++|+|++ .+|++|+.|++
T Consensus       147 ~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~-------~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~  217 (345)
T 3fm0_A          147 NSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDD-------WVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRT  217 (345)
T ss_dssp             CCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred             cCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCC-------EEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCe
Confidence            45778899999999876 89999999999999998652       13457788999999999999998 99999999999


Q ss_pred             EEEEECCCCC-------------eeEEEEecC-CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          429 VKLWDLSNNQ-------------PSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       429 i~vwd~~~~~-------------~~~~~~~~~-~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      |+||+.....             ..++..+.+ |...|++++|+|++. .|++++.|+.|++|++..+.
T Consensus       218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTS
T ss_pred             EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCC
Confidence            9999963321             123444444 888999999999999 59999999999999987654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-34  Score=275.63  Aligned_cols=287  Identities=18%  Similarity=0.225  Sum_probs=232.8

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++| |++++|++|+.++   .+.+|.+.....  ......|    .....++.|       +|++++|++|
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~dg---~v~vw~~~~~~~--~~~~~~~----~~~v~~~~~-------~~~~~~l~~~   77 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRDG---TVRLWSKDDQWL--GTVVYTG----QGFLNSVCY-------DSEKELLLFG   77 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETTS---EEEEEEESSSEE--EEEEEEC----SSCEEEEEE-------ETTTTEEEEE
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcCC---cEEEEECCCCEE--EEEeecC----CccEEEEEE-------CCCCCEEEEe
Confidence            358899999999 9999999999887   566666643321  1222222    334467777       6899999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.+|.|++|++......                        .....+.+|...|.+++|+   +.+|++|+.||.|++||
T Consensus        78 ~~dg~i~~~~~~~~~~~------------------------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d  130 (313)
T 3odt_A           78 GKDTMINGVPLFATSGE------------------------DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK  130 (313)
T ss_dssp             ETTSCEEEEETTCCTTS------------------------CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE
T ss_pred             cCCCeEEEEEeeecCCC------------------------CcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc
Confidence            99999999999753221                        2233445799999999994   34899999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe-ecCCeEEEEeCCCCCCEEEEEeCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d  374 (502)
                        .++.+..+..|...+.++.|+|....+|++++.||.|++||...  ....... +...+.+++|+|++.  +++++.+
T Consensus       131 --~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~d  204 (313)
T 3odt_A          131 --EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGH--FISCSND  204 (313)
T ss_dssp             --TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--EEEEECSSCSSCEEEEEEEETTE--EEEEETT
T ss_pred             --CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--eEEEEeccCcccEEEEEEcCCCe--EEEccCC
Confidence              77888889999999999999984448999999999999999432  2222223 778899999999764  8999999


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEE
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  454 (502)
                      |.|++||+++.         .++..+..|...|++++|+|++  .|++++.||.|++||+.+++  .+..+..|...|.+
T Consensus       205 g~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~  271 (313)
T 3odt_A          205 GLIKLVDMHTG---------DVLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGS--LKQVITLPAISIWS  271 (313)
T ss_dssp             SEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCC--EEEEEECSSSCEEE
T ss_pred             CeEEEEECCch---------hhhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCc--eeEEEeccCceEEE
Confidence            99999999986         7788889999999999999987  48899999999999999987  56666778889999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          455 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       455 ~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ++|+|++.  +++++.||.|++|++.+++.+..
T Consensus       272 ~~~~~~~~--~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          272 VDCMSNGD--IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             EEECTTSC--EEEEETTSCEEEEESCGGGCCC-
T ss_pred             EEEccCCC--EEEEeCCCcEEEEeCCCCceeeh
Confidence            99999998  55689999999999998876654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.9e-36  Score=294.25  Aligned_cols=292  Identities=11%  Similarity=0.177  Sum_probs=215.4

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCC-CCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESD-GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      +...|.+++|+|++++|++|+.++   .+.||...... .....+..|.     ....+++|       +|++++|++|+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~-------s~~~~~l~s~s   74 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATN---QVELYEQDGNGWKHARTFSDHD-----KIVTCVDW-------APKSNRIVTCS   74 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSS---CBCEEEEETTEEEECCCBCCCS-----SCEEEEEE-------CTTTCCEEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEecCCC---EEEEEEccCCceEEEEEEecCC-----ceEEEEEE-------eCCCCEEEEEe
Confidence            356899999999999999998876   56888877542 1111222332     22367777       78999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .|+.|+|||+......                        .....+.+|...|++++|+|+ +.+|++|+.|++|++||+
T Consensus        75 ~d~~v~vwd~~~~~~~------------------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~  129 (377)
T 3dwl_C           75 QDRNAYVYEKRPDGTW------------------------KQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVISVCYF  129 (377)
T ss_dssp             TTSSEEEC------CC------------------------CCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCEEECCC
T ss_pred             CCCeEEEEEcCCCCce------------------------eeeeEecccCCceEEEEECCC-CCEEEEEecCCeEEEEEE
Confidence            9999999999754311                        122344579999999999998 569999999999999999


Q ss_pred             CCCe---eeEEecc-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC------------------CccceEeecCC
Q 010769          297 AAGK---CNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST------------------HSGFKWAVAAD  354 (502)
Q Consensus       297 ~~~~---~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------------~~~~~~~~~~~  354 (502)
                      .+++   +...+.. |...|.+++|+|++ .+|++++.|+.|++||++...                  ..... .|...
T Consensus       130 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  207 (377)
T 3dwl_C          130 EQENDWWVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW  207 (377)
T ss_dssp             -----CCCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS
T ss_pred             CCcccceeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce
Confidence            9887   4777877 99999999999998 899999999999999986322                  12222 67788


Q ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~  434 (502)
                      |.+++|+|++. ++++++.||.|++||+++....     ...+..+..|...|.+++|+|++ .+|++|+.++.+ +|+.
T Consensus       208 v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          208 VHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQP-----PRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             EEEEEECTTSS-CEEEEETTTEEC-CEECSTTSC-----EEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECC
T ss_pred             EEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCc-----ceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEe
Confidence            99999999876 8999999999999999987210     01167788999999999999998 888888766655 7766


Q ss_pred             CCCCe-------------------------------------eEEE-------------EecCCCCCEEEEEEcCCCCc-
Q 010769          435 SNNQP-------------------------------------SCIA-------------SRNPKAGAVFSVAFSEDSPF-  463 (502)
Q Consensus       435 ~~~~~-------------------------------------~~~~-------------~~~~~~~~v~~~~~spd~~~-  463 (502)
                      .....                                     ....             ....|.+.|+++++.+.... 
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~  359 (377)
T 3dwl_C          280 NESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGN  359 (377)
T ss_dssp             CC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTE
T ss_pred             CCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCc
Confidence            52110                                     0000             01238899999998765543 


Q ss_pred             --EEEEEeCCCcEEEEEC
Q 010769          464 --VLAIGGSKGKLEIWDT  479 (502)
Q Consensus       464 --llasg~~dg~i~vwd~  479 (502)
                        .|++||.||.|+|||+
T Consensus       360 ~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          360 ITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEEEEETTSEEEEECC
T ss_pred             eEEEEeecCCCcEEEecC
Confidence              5999999999999986

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.5e-34  Score=283.64  Aligned_cols=305  Identities=11%  Similarity=0.109  Sum_probs=217.3

Q ss_pred             ccccccccCCCceEEEEEecCC----cceeEEEEEecCCCCC-CceeeeeccccC---CCcceeeeecCCCCCCCCCCEE
Q 010769          141 DLEDMTINPNDAVIVCARNEDD----VSHLEVYILEESDGGD-PNLYVHHHIIIP---AFPLCMAWLDCPLKDREKGNFM  212 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~----~~~l~v~~~~~~~~~~-~~l~~~~~~~~~---~~~~~~~w~~~~~~~s~~~~~l  212 (502)
                      +|.+++|+|++++||+|+.+..    ...|++|.++...... ..+..++...+.   ..+.|+.+         +++.+
T Consensus        16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~---------~~~~~   86 (365)
T 4h5i_A           16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA---------SKGII   86 (365)
T ss_dssp             CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE---------ETTEE
T ss_pred             CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe---------CCCEE
Confidence            6999999999999999975432    1247788776554310 112222322222   12345543         45555


Q ss_pred             EEe-----------cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcE
Q 010769          213 AVG-----------SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       213 a~g-----------~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      ++|           +.++.||+|++...........                  .........+...+.+++|+|++. +
T Consensus        87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~v~fSpDg~-~  147 (365)
T 4h5i_A           87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT------------------SVDFDASTNADDYTKLVYISREGT-V  147 (365)
T ss_dssp             EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE------------------EECSSCCCCTTCCEEEEEECTTSS-C
T ss_pred             EEEECCCccEEEEecCCCcEEEEEecCCCceEEEee------------------eeceeecCCcccCEEEEEEcCCCC-E
Confidence            554           5577899998864332111000                  011112234566799999999954 5


Q ss_pred             EE--EEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc--eEeecCCeEE
Q 010769          282 LA--SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVES  357 (502)
Q Consensus       282 l~--sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~  357 (502)
                      |+  +++.|++|+|||+.+++++..+. |...|.+|+|+|++ .+|++++. +.+++|+..++.....  ...+...+.+
T Consensus       148 la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (365)
T 4h5i_A          148 AAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSK  224 (365)
T ss_dssp             EEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEE
T ss_pred             EEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEE
Confidence            54  45579999999999999998886 77889999999999 88888875 5566777666554322  2345667999


Q ss_pred             EEeCCCCCCEEEEEeCCC----eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          358 LAWDPHAEHSFVVSLEDG----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       358 v~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      ++|+|++. ++++++.++    .+++|++......     ......+..|..+|++++|+|++ ++||+|+.|++|+|||
T Consensus       225 v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd  297 (365)
T 4h5i_A          225 INFIADDT-VLIAASLKKGKGIVLTKISIKSGNTS-----VLRSKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVK  297 (365)
T ss_dssp             EEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEE-----EEEEEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEE
T ss_pred             EEEcCCCC-EEEEEecCCcceeEEeecccccceec-----ceeeeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEE
Confidence            99999876 677777666    6888998765210     12245677899999999999998 9999999999999999


Q ss_pred             CCCCCeeEEEE-ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          434 LSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       434 ~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      +.+++  ++.. ..+|.++|++++|+||++ +||+|+.|++|+||++..+....
T Consensus       298 ~~~~~--~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~~~~~  348 (365)
T 4h5i_A          298 LKDLS--MSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLNYANY  348 (365)
T ss_dssp             TTTTE--EEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTTTTC-
T ss_pred             CCCCc--EEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCCcCc
Confidence            99987  4555 478999999999999999 59999999999999997654433

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.6e-34  Score=275.56  Aligned_cols=249  Identities=25%  Similarity=0.412  Sum_probs=210.5

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|++++||+|+.||.|+||++....                           ....+.+|...|.+++
T Consensus        27 ~~~~~-------s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------~~~~~~~h~~~v~~~~   72 (312)
T 4ery_A           27 SSVKF-------SPNGEWLASSSADKLIKIWGAYDGK---------------------------FEKTISGHKLGISDVA   72 (312)
T ss_dssp             EEEEE-------CTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEeeCCCeEEEEeCCCcc---------------------------cchhhccCCCceEEEE
Confidence            67777       7899999999999999999986422                           2223457999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  353 (502)
                      |+|+ +++|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++ .+|++|+.|+.|++||+++.+.......+..
T Consensus        73 ~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  150 (312)
T 4ery_A           73 WSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSD  150 (312)
T ss_dssp             ECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EcCC-CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCC
Confidence            9999 5799999999999999999999999999999999999999998 8999999999999999998877665667888


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      .|.+++|+|++. ++++++.||.|++||+++.         ..+..+ ..+..++.+++|+|++ .+|++++.|+.|++|
T Consensus       151 ~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iw  219 (312)
T 4ery_A          151 PVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG---------QCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLW  219 (312)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSCEEEEETTTC---------CEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEE
T ss_pred             cEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------ceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEE
Confidence            999999999865 8999999999999999986         444444 4567789999999998 899999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCCE--EEEEEc-CCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          433 DLSNNQPSCIASRNPKAGAV--FSVAFS-EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v--~~~~~s-pd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      |+++++  ++..+.+|...+  ....|+ +++. +|++|+.||.|++||+.+++.+..+.++.
T Consensus       220 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~  279 (312)
T 4ery_A          220 DYSKGK--CLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKLQGHT  279 (312)
T ss_dssp             ETTTTE--EEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred             ECCCCc--EEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCchhhhhhhccC
Confidence            999887  455566665432  223444 5666 69999999999999999998887665553

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.6e-33  Score=281.79  Aligned_cols=289  Identities=21%  Similarity=0.349  Sum_probs=226.0

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      -..+.|.|+++ ++||+|. ++     .|++|+...+....++..+  .......|++|       +|+|++||+|+.||
T Consensus       106 ~y~~~l~wS~~-n~lAvgl-d~-----tV~lWd~~tg~~~~~~~~~--~~~~~V~sv~f-------spdg~~lasgs~Dg  169 (420)
T 4gga_A          106 YYLNLVDWSSG-NVLAVAL-DN-----SVYLWSASSGDILQLLQME--QPGEYISSVAW-------IKEGNYLAVGTSSA  169 (420)
T ss_dssp             TTCBCEEECTT-SEEEEEE-TT-----EEEEEETTTCCEEEEEECC--STTCCEEEEEE-------CTTSSEEEEEETTS
T ss_pred             ccceeEEECCC-CEEEEEe-CC-----EEEEEECCCCCEEEEEEec--CCCCcEEEEEE-------CCCCCEEEEEECCC
Confidence            34677999975 5777775 55     5555555444111111111  11233478888       79999999999999


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .|+||++.+..                           ....+.+|...|.+++|++   .+|++|+.|+.+++||....
T Consensus       170 ~v~iWd~~~~~---------------------------~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          170 EVQLWDVQQQK---------------------------RLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             CEEEEETTTTE---------------------------EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSS
T ss_pred             eEEEEEcCCCc---------------------------EEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeeccc
Confidence            99999997532                           2334568999999999975   48999999999999998864


Q ss_pred             -eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc----cceEeecCCeEEEEeCCCCCCEEEEE--e
Q 010769          300 -KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVS--L  372 (502)
Q Consensus       300 -~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~v~~~p~~~~~l~~~--~  372 (502)
                       ..+..+.+|...+..+.|+|.+ .++++++.|+.+++|+.+.....    .....+...|.+++|+|.+..+++++  +
T Consensus       220 ~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs  298 (420)
T 4gga_A          220 EHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT  298 (420)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred             ceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec
Confidence             4567788999999999999999 89999999999999999876542    23346778899999999988887764  4


Q ss_pred             CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCCeeEEEEecCCCC
Q 010769          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSNNQPSCIASRNPKAG  450 (502)
Q Consensus       373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s--~dg~i~vwd~~~~~~~~~~~~~~~~~  450 (502)
                      .|+.|++||++++         .....+.. ...+.++.|+|++ ..+++++  .|+.|+|||+.+++  ++..+.+|.+
T Consensus       299 ~D~~I~iwd~~t~---------~~~~~~~~-~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~--~v~~l~gH~~  365 (420)
T 4gga_A          299 SDRHIRIWNVCSG---------ACLSAVDA-HSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMA--KVAELKGHTS  365 (420)
T ss_dssp             TTCEEEEEETTTT---------EEEEEEEC-SSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCC--EEEEECCCSS
T ss_pred             CCCEEEEEeCCcc---------ccceeecc-ccceeeeeecCCC-CeEEEEEecCCCEEEEEECCCCc--EEEEEcCCCC
Confidence            7999999999986         55666654 4578999999998 5555544  69999999999987  6778899999


Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       451 ~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .|++++|+|+|.+ |++|+.|++|+|||+......++.-
T Consensus       366 ~V~~l~~spdg~~-l~S~s~D~tvriWdv~~~~~~~~~~  403 (420)
T 4gga_A          366 RVLSLTMSPDGAT-VASAAADETLRLWRCFELDPARRRE  403 (420)
T ss_dssp             CEEEEEECTTSSC-EEEEETTTEEEEECCSCSSCC----
T ss_pred             CEEEEEEcCCCCE-EEEEecCCeEEEEECCCCCccchhh
Confidence            9999999999995 9999999999999998776655443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2e-34  Score=277.38  Aligned_cols=248  Identities=19%  Similarity=0.272  Sum_probs=207.2

Q ss_pred             ceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          194 LCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .+++|       +|+ +++|++|+.|++|++|++.....                      +.......+.+|...|.++
T Consensus        21 ~~l~~-------~~~~~~~l~s~s~D~~v~~W~~~~~~~----------------------~~~~~~~~~~~h~~~v~~~   71 (319)
T 3frx_A           21 TSLAT-------SAGQPNLLLSASRDKTLISWKLTGDDQ----------------------KFGVPVRSFKGHSHIVQDC   71 (319)
T ss_dssp             EEEEE-------CSSCTTEEEEEETTSEEEEEEEEEETT----------------------EEEEEEEEEECCSSCEEEE
T ss_pred             EEEEc-------cCCCccEEEEecCCccEEEecCCCCCc----------------------cccccceEEeCCcccEEEE
Confidence            57777       564 58999999999999999853211                      1122334566899999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      +|+|+ +.+|++|+.|++|+|||+.+++++..+.+|...|.+++|+|++ .+|++|+.|++|++||++.. .......|.
T Consensus        72 ~~s~d-g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~  148 (319)
T 3frx_A           72 TLTAD-GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQ-CLATLLGHN  148 (319)
T ss_dssp             EECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSC-EEEEECCCS
T ss_pred             EECCC-CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eEEEEeccC
Confidence            99999 5699999999999999999999999999999999999999998 89999999999999999753 334455788


Q ss_pred             CCeEEEEeCCCC-----CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769          353 ADVESLAWDPHA-----EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       353 ~~v~~v~~~p~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      ..+.+++|+|..     ...+++++.|+.|++||+++.         .....+.+|...|.+++|+|++ .+|++|+.||
T Consensus       149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---------~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg  218 (319)
T 3frx_A          149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---------QIEADFIGHNSNINTLTASPDG-TLIASAGKDG  218 (319)
T ss_dssp             SCEEEEEECCC------CCEEEEEETTSCEEEEETTTT---------EEEEEECCCCSCEEEEEECTTS-SEEEEEETTC
T ss_pred             CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc---------hhheeecCCCCcEEEEEEcCCC-CEEEEEeCCC
Confidence            899999999853     337999999999999999876         6677888999999999999998 9999999999


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .|++||+.+.+.  +..+.. ...|.+++|+|++. +|++++. +.+++|++.....+...
T Consensus       219 ~i~iwd~~~~~~--~~~~~~-~~~v~~~~~sp~~~-~la~~~~-~~i~v~~~~~~~~~~~~  274 (319)
T 3frx_A          219 EIMLWNLAAKKA--MYTLSA-QDEVFSLAFSPNRY-WLAAATA-TGIKVFSLDPQYLVDDL  274 (319)
T ss_dssp             EEEEEETTTTEE--EEEEEC-CSCEEEEEECSSSS-EEEEEET-TEEEEEEETTEEEEEEE
T ss_pred             eEEEEECCCCcE--EEEecC-CCcEEEEEEcCCCC-EEEEEcC-CCcEEEEeCcCeeeecc
Confidence            999999998873  444444 36799999999998 4776665 46999999877665443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-34  Score=289.33  Aligned_cols=298  Identities=12%  Similarity=0.164  Sum_probs=234.1

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      |...|.+++|+|++++|++|+.++   .+.+|.  .... ....+..|    .....++.|       +|++++|++++.
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~~--~~~~-~~~~~~~~----~~~v~~~~~-------~~~~~~l~~~~~  169 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENG---ELRLWN--KTGA-LLNVLNFH----RAPIVSVKW-------NKDGTHIISMDV  169 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTS---CEEEEE--TTSC-EEEEECCC----CSCEEEEEE-------CTTSSEEEEEET
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCC---eEEEEe--CCCC-eeeeccCC----CccEEEEEE-------CCCCCEEEEEec
Confidence            577999999999999999999887   445554  2222 11111122    233467777       789999999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      +|.|++|++..............            ............+...|.+++|+|+ + .+++++.+|.|++||+.
T Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~g~i~~~d~~  235 (425)
T 1r5m_A          170 ENVTILWNVISGTVMQHFELKET------------GGSSINAENHSGDGSLGVDVEWVDD-D-KFVIPGPKGAIFVYQIT  235 (425)
T ss_dssp             TCCEEEEETTTTEEEEEECCC---------------------------CCCBSCCEEEET-T-EEEEECGGGCEEEEETT
T ss_pred             CCeEEEEECCCCcEEEEeecccc------------CccceeeccccCCcceeeEEEEcCC-C-EEEEEcCCCeEEEEEcC
Confidence            99999999976433221110000            0000000111122333999999998 3 68999999999999999


Q ss_pred             CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeE
Q 010769          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i  377 (502)
                      +++.+..+..|...|.+++|+|++ .+|++++.||.|++||+++.........+...+.+++|+|++  ++++++.+|.|
T Consensus       236 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i  312 (425)
T 1r5m_A          236 EKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSV  312 (425)
T ss_dssp             CSSCSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEE
T ss_pred             CCceeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcE
Confidence            999999999999999999999998 899999999999999999887776666788999999999976  89999999999


Q ss_pred             EEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC------------------e
Q 010769          378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ------------------P  439 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~------------------~  439 (502)
                      ++||+++.         ..+..+..|...|.+++|+|++ .+|++++.||.|++||+.+..                  .
T Consensus       313 ~i~d~~~~---------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (425)
T 1r5m_A          313 RLWSLKQN---------TLLALSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPI  382 (425)
T ss_dssp             EEEETTTT---------EEEEEEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEEC
T ss_pred             EEEECCCC---------cEeEecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccc
Confidence            99999886         6788888999999999999998 899999999999999998765                  0


Q ss_pred             eEEEEecCCCC--CEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          440 SCIASRNPKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       440 ~~~~~~~~~~~--~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      ..+..+..|..  .|++++|+|+++ +|++++.||.|++|++.
T Consensus       383 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          383 PLYASYQSSQDNDYIFDLSWNCAGN-KISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CEEEEECCTTCCCCEEEEEECTTSS-EEEEEESSSCCEEEECC
T ss_pred             hhhhhhcCcccCCceEEEEccCCCc-eEEEEecCceEEEEeec
Confidence            14666777766  999999999999 58899999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.1e-34  Score=276.94  Aligned_cols=243  Identities=21%  Similarity=0.292  Sum_probs=196.4

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      +++++||+|+.|++|+||++.......                    ........+.+|...|.+++|+|+ +.+|++|+
T Consensus        37 ~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------------~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s   95 (343)
T 2xzm_R           37 EDSPVLISGSRDKTVMIWKLYEEEQNG--------------------YFGIPHKALTGHNHFVSDLALSQE-NCFAISSS   95 (343)
T ss_dssp             CCCCEEEEEETTSCEEEEEECSSCCSS--------------------BSEEEEEEECCCSSCEEEEEECSS-TTEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEEECCcCCccc--------------------ccccccchhccCCCceEEEEECCC-CCEEEEEc
Confidence            489999999999999999986432211                    011223356689999999999999 56999999


Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc--eEeecCCeEEEEeCCCC
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHA  364 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~v~~~p~~  364 (502)
                      .|++|++||+.+++++..+.+|...|.+++|+|++ .+|++++.|++|++||++.......  ...+...|.+++|+|.+
T Consensus        96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (343)
T 2xzm_R           96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM  174 (343)
T ss_dssp             TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc
Confidence            99999999999999999999999999999999999 8999999999999999974322111  11467789999999976


Q ss_pred             C---------CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010769          365 E---------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       365 ~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      .         .++++++.||.|++||.+          ......+.+|...|.+++|+|++ .+|++|+.|+.|++||+.
T Consensus       175 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~----------~~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          175 KSANKVQPFAPYFASVGWDGRLKVWNTN----------FQIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             CSCSCCCSSCCEEEEEETTSEEEEEETT----------TEEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESS
T ss_pred             ccccccCCCCCEEEEEcCCCEEEEEcCC----------CceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECC
Confidence            2         489999999999999943          25667888999999999999998 999999999999999995


Q ss_pred             CCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          436 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       436 ~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      .... ....+ .+...|.+++|+|++. +|+ ++.++.|++|++.++..+.
T Consensus       244 ~~~~-~~~~~-~~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          244 NLTY-PQREF-DAGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             CCSS-CSEEE-ECSSCEEEEEECSSSC-EEE-EEESSCEEEEESSSCCSCS
T ss_pred             CCcc-cceee-cCCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCCCCCCc
Confidence            4332 11222 2345699999999998 455 4567889999998876543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.4e-33  Score=273.22  Aligned_cols=255  Identities=20%  Similarity=0.308  Sum_probs=212.6

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||.|+||++......                       ......+.+|...|++++
T Consensus        15 ~~~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------------------~~~~~~~~~~~~~v~~~~   64 (351)
T 3f3f_A           15 HDVVY-------DFYGRHVATCSSDQHIKVFKLDKDTSN-----------------------WELSDSWRAHDSSIVAID   64 (351)
T ss_dssp             EEEEE-------CSSSSEEEEEETTSEEEEEEECSSSCC-----------------------EEEEEEEECCSSCEEEEE
T ss_pred             eEEEE-------cCCCCEEEEeeCCCeEEEEECCCCCCc-----------------------ceecceeccCCCcEEEEE
Confidence            78888       789999999999999999999753211                       123334568999999999


Q ss_pred             ecCC-CCcEEEEEecCCcEEEEECCCC---------eeeEEeccCCCCeEEEEEcCC--CCcEEEEEECCCcEEEEeCCC
Q 010769          274 WNKE-FRNILASASADKQVKIWDVAAG---------KCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       274 ~~~~-~~~~l~sgs~Dg~v~vwd~~~~---------~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~  341 (502)
                      |+|. .+.+|++|+.||+|++||+.++         +++..+..|...|.+++|+|+  + .+|++++.||.|++||+++
T Consensus        65 ~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~  143 (351)
T 3f3f_A           65 WASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALE  143 (351)
T ss_dssp             ECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSS
T ss_pred             EcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCC
Confidence            9994 2579999999999999999887         668888899999999999999  7 8999999999999999998


Q ss_pred             CCCccceE-------------eecCCeEEEEeCCC--CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCC
Q 010769          342 STHSGFKW-------------AVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA  406 (502)
Q Consensus       342 ~~~~~~~~-------------~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~  406 (502)
                      ........             .+...+.+++|+|.  ....+++++.++.+.+|+.....       ...+..+.+|...
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~  216 (351)
T 3f3f_A          144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHKSL  216 (351)
T ss_dssp             TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCCSC
T ss_pred             hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCCcc
Confidence            77544322             35667999999997  35589999999999888877652       1346777889999


Q ss_pred             eeEEEEcCCCC---CEEEEEeCCCcEEEEECCCCC--------------------------------------------e
Q 010769          407 VCTISYNPLVP---NLLATGSTDKMVKLWDLSNNQ--------------------------------------------P  439 (502)
Q Consensus       407 v~~l~~sp~~~---~~l~t~s~dg~i~vwd~~~~~--------------------------------------------~  439 (502)
                      |++++|+|+++   .+|++|+.||.|++||++...                                            .
T Consensus       217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (351)
T 3f3f_A          217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV  296 (351)
T ss_dssp             EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEE
T ss_pred             eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccc
Confidence            99999999864   699999999999999998641                                            2


Q ss_pred             eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ..+..+.+|.+.|++++|+|+++ +|++|+.||.|+||++.++..+..
T Consensus       297 ~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          297 ELLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             EEEEEECTTSSCEEEEEECSSSC-CEEEEETTSCEEEEEECTTSCEEE
T ss_pred             cEEEEEecccccEEEEEEcCCCC-EEEEecCCCcEEEEecCcCcchhh
Confidence            45667788999999999999999 499999999999999998876543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.9e-35  Score=281.33  Aligned_cols=249  Identities=22%  Similarity=0.329  Sum_probs=199.6

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|+|++||+|+.|++|+|||+....                         ......+.+|...|++++
T Consensus        17 ~~v~~-------s~~g~~lasgs~D~~v~lwd~~~~~-------------------------~~~~~~l~gH~~~V~~v~   64 (316)
T 3bg1_A           17 HDAQM-------DYYGTRLATCSSDRSVKIFDVRNGG-------------------------QILIADLRGHEGPVWQVA   64 (316)
T ss_dssp             EEEEE-------CGGGCEEEEEETTTEEEEEEEETTE-------------------------EEEEEEEECCSSCEEEEE
T ss_pred             EEeeE-------cCCCCEEEEEeCCCeEEEEEecCCC-------------------------cEEEEEEcCCCccEEEEE
Confidence            67777       7899999999999999999986421                         112234568999999999


Q ss_pred             ecCC-CCcEEEEEecCCcEEEEECCCC--eeeEEeccCCCCeEEEEEcCCC-CcEEEEEECCCcEEEEeCCCCCC---cc
Q 010769          274 WNKE-FRNILASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTH---SG  346 (502)
Q Consensus       274 ~~~~-~~~~l~sgs~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~---~~  346 (502)
                      |++. .+++|++|+.|++|++||+.++  +.+..+.+|...|.+++|+|++ ..+|++|+.|++|++|+++....   ..
T Consensus        65 ~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~  144 (316)
T 3bg1_A           65 WAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK  144 (316)
T ss_dssp             ECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC
T ss_pred             eCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee
Confidence            9753 3569999999999999999987  4667788999999999999983 27899999999999999987532   12


Q ss_pred             ceEeecCCeEEEEeCCCC----------------CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEE
Q 010769          347 FKWAVAADVESLAWDPHA----------------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI  410 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~~----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  410 (502)
                      ....|...+.+++|+|+.                ..+|++|+.|+.|++||++....      ..++..+.+|...|.++
T Consensus       145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~------~~~~~~l~~h~~~V~~v  218 (316)
T 3bg1_A          145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ------WKEEQKLEAHSDWVRDV  218 (316)
T ss_dssp             BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC------EEEEECCBCCSSCEEEE
T ss_pred             eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc------cceeeecccCCCceEEE
Confidence            233567789999999963                24799999999999999975310      13456678999999999


Q ss_pred             EEcCCC---CCEEEEEeCCCcEEEEECCCCCe--eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          411 SYNPLV---PNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       411 ~~sp~~---~~~l~t~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      +|+|++   ..+|++|+.|++|++|++.....  .....+..|.+.|++++|+|+++ +||+|+.||.|+||+...
T Consensus       219 ~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          219 AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEECT
T ss_pred             EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEECC
Confidence            999975   37899999999999999976310  01122345678999999999999 499999999999999863

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=272.37  Aligned_cols=246  Identities=21%  Similarity=0.348  Sum_probs=192.6

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .++.|       +++  +||+|+.|+.|+||++.......                       .......+|...|.+|+
T Consensus        18 ~~~~~-------s~~--~las~~~D~~i~lw~~~~~~~~~-----------------------~~~~~~~~h~~~v~~v~   65 (330)
T 2hes_X           18 WSFDF-------SQG--ILATGSTDRKIKLVSVKYDDFTL-----------------------IDVLDETAHKKAIRSVA   65 (330)
T ss_dssp             EEEEE-------ETT--EEEEEESSSCEEEEECSSSCCEE-----------------------EEEECTTCCCSCEEEEE
T ss_pred             eeecc-------CCC--EEEEEcCCCEEEEEEecCCCeEE-----------------------EEEEecCCccCCEEEEE
Confidence            56666       444  99999999999999996421100                       00001124999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCC-------CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC---
Q 010769          274 WNKEFRNILASASADKQVKIWDVAA-------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST---  343 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~---  343 (502)
                      |+|+ +.+|++|+.|++|+||++..       .+++..+.+|...|.+++|+|++ .+|++|+.|++|++||++...   
T Consensus        66 ~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~  143 (330)
T 2hes_X           66 WRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEY  143 (330)
T ss_dssp             ECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCC
T ss_pred             ECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCe
Confidence            9999 56999999999999999853       45677889999999999999998 899999999999999995432   


Q ss_pred             -CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC-CCEEE
Q 010769          344 -HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-PNLLA  421 (502)
Q Consensus       344 -~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~  421 (502)
                       .......|...|.+++|+|++. +|++++.|+.|++||++...       ..++..+.+|...|.+++|+|++ ..+|+
T Consensus       144 ~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          144 ECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDD-------WECVAVLNGHEGTVWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             EEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred             EEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCC-------eeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence             2223446788999999999865 89999999999999987641       25677889999999999999983 26899


Q ss_pred             EEeCCCcEEEEECCCCCe------eEEEEecC-CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          422 TGSTDKMVKLWDLSNNQP------SCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~------~~~~~~~~-~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +|+.|++|++|++.....      .+...+.. |...|.+++|++++  +|++++.||.|+||++.++.
T Consensus       216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE
T ss_pred             EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc
Confidence            999999999999865421      23444444 88999999999776  48999999999999998763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-34  Score=288.03  Aligned_cols=303  Identities=13%  Similarity=0.156  Sum_probs=223.5

Q ss_pred             CCCccccccccccC-CCceEEEEEecCCcceeEEEEEec---CCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010769          136 DEDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEE---SDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF  211 (502)
Q Consensus       136 ~~~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~  211 (502)
                      ..|...|.+++|+| ++++|++|+.++   .++||.+..   .......+...|.    ....|++|       +|++++
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~h~----~~v~~~~~-------~~~~~~  125 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQG---VIKIWNLKEIIVGEVYSSSLTYDCS----STVTQITM-------IPNFDA  125 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTS---EEEEEEHHHHHTTCCCSCSEEEECS----SCEEEEEE-------CTTSSE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCc---eEEEeECcccccCcccceeeeccCC----CCEEEEEE-------eCCCCE
Confidence            45789999999999 999999999887   667777665   2211112222333    33478888       689999


Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE--ecCCCCcEEEEEecCC
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA--WNKEFRNILASASADK  289 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~~l~sgs~Dg  289 (502)
                      |++|+.||.|+||++...........+..            ...........++...+.++.  ++++ +.+|++|+.||
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~  192 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKFLNC------------ECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALTNLS  192 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEEEEE------------EEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEETTS
T ss_pred             EEEEeCCCEEEEEEeccccCCceeecccc------------ceeEEEEccCcccccCceEEEEEEcCC-CCEEEEEeCCC
Confidence            99999999999999852100000000000            000001111111667788888  5577 67999999999


Q ss_pred             cEEEEECCCCeeeEEecc--CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCC---
Q 010769          290 QVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPH---  363 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~---  363 (502)
                      +|++||+.+++++..+..  |...|++++|+|++ .+|++|+.||.|++||+++........ .+...|.+++|+|.   
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~  271 (437)
T 3gre_A          193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK  271 (437)
T ss_dssp             EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred             eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence            999999999999999987  89999999999998 899999999999999999876554322 55668999977763   


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe------------------------c--CCCCeeEEEEcCCCC
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH------------------------A--HDKAVCTISYNPLVP  417 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------------------------~--h~~~v~~l~~sp~~~  417 (502)
                      ...++++|+.||.|++||++++.         .+..+.                        +  |...|++++|+ ++ 
T Consensus       272 ~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-  340 (437)
T 3gre_A          272 NSVIVVGGSSKTFLTIWNFVKGH---------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-  340 (437)
T ss_dssp             TEEEEEEESTTEEEEEEETTTTE---------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-
T ss_pred             CccEEEEEcCCCcEEEEEcCCCc---------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-
Confidence            23489999999999999998762         222222                        2  66779999999 45 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEEe-----------------------------------cCCCCCEEEEEEcCC--
Q 010769          418 NLLATGSTDKMVKLWDLSNNQPSCIASR-----------------------------------NPKAGAVFSVAFSED--  460 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~~-----------------------------------~~~~~~v~~~~~spd--  460 (502)
                      .+|++|+.|+.|++||+.+++.......                                   ..|...|++++|+++  
T Consensus       341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~  420 (437)
T 3gre_A          341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE  420 (437)
T ss_dssp             EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred             eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence            8999999999999999998764322221                                   128899999999998  


Q ss_pred             CCcEEEEEeCCCcEEEEE
Q 010769          461 SPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       461 ~~~llasg~~dg~i~vwd  478 (502)
                      +. +|++|+.||.|+||+
T Consensus       421 ~~-~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          421 TP-LLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SE-EEEEEETTSCEEEEC
T ss_pred             ce-EEEEEcCCceEEEeC
Confidence            55 799999999999995

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.2e-33  Score=281.51  Aligned_cols=319  Identities=13%  Similarity=0.209  Sum_probs=220.4

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC----CC-----ceeeeec--------cccCCCcceeeee
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG----DP-----NLYVHHH--------IIIPAFPLCMAWL  199 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~----~~-----~l~~~~~--------~~~~~~~~~~~w~  199 (502)
                      .+.+.|.+++|+|++++||+|+.++   .+.||.+......    ..     ..+..|.        ..+.....++.| 
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~-  101 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGG---RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW-  101 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTS---EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE-
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCC---eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE-
Confidence            3678999999999999999999887   5677776654310    00     1111221        001134577887 


Q ss_pred             cCCCCCCCCC--CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhh-ccccC------------CccccccccCC
Q 010769          200 DCPLKDREKG--NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKK-KSKKG------------KKSSIKYKKGS  264 (502)
Q Consensus       200 ~~~~~~s~~~--~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~-~~~~~------------~~~~~~~~~~~  264 (502)
                            +|++  .+|++|+.|+.|+||++...........+.......... .....            ..........+
T Consensus       102 ------~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B          102 ------LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             ------CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             ------cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence                  6777  899999999999999986532210000000000000000 00000            00001122468


Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCC-CeeeE-------EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNL-------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM  336 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~-~~~~~-------~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  336 (502)
                      |...|++++|+|+ +.+|++| .|++|++||+.+ ++++.       .+.+|...|.+++|+|+++.+|++|+.||.|++
T Consensus       176 h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          176 HTYHINSISINSD-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             CSSCCCEEEECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             CCcceEEEEEcCC-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence            9999999999998 5689998 799999999984 44444       356899999999999998789999999999999


Q ss_pred             EeCCCCCC----ccceEeecC------------CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE
Q 010769          337 KDARISTH----SGFKWAVAA------------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL  400 (502)
Q Consensus       337 wd~~~~~~----~~~~~~~~~------------~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  400 (502)
                      ||+++...    ......+..            .|.+++|+|++. ++++++. |.|++||+++.        ..++..+
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~--------~~~~~~~  323 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNME--------NRPVETY  323 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCC--------SSCSCCE
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCC--------cccccee
Confidence            99998775    333334443            899999999865 7888888 99999999973        2666777


Q ss_pred             ecCCCC---------------eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe--------------------
Q 010769          401 HAHDKA---------------VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR--------------------  445 (502)
Q Consensus       401 ~~h~~~---------------v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~--------------------  445 (502)
                      ..|...               +..++|+|++ .+|++|+.||.|++||+.+++...+...                    
T Consensus       324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (447)
T 3dw8_B          324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGK  402 (447)
T ss_dssp             ESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSC
T ss_pred             eccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCC
Confidence            777532               3349999998 8999999999999999998874322111                    


Q ss_pred             ----------cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          446 ----------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       446 ----------~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                                ..+...|.+++|+|++. +||+++.++ +++|..+
T Consensus       403 ~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          403 RKKDEISVDSLDFNKKILHTAWHPKEN-IIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCTTCEEGGGCCTTSCCCEEEECSSSS-EEEEECSSC-EEEEECC
T ss_pred             cccccccccccccCCceeEEEECCCCC-EEEEEecce-eeeeccc
Confidence                      12345688999999999 588877664 8888754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.2e-33  Score=274.92  Aligned_cols=303  Identities=14%  Similarity=0.218  Sum_probs=224.3

Q ss_pred             CCccccccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCceeee---------eccccCCCcceeeeecCCCCCC
Q 010769          137 EDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH---------HHIIIPAFPLCMAWLDCPLKDR  206 (502)
Q Consensus       137 ~~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~w~~~~~~~s  206 (502)
                      .|...|.+++|+| ++++|++|+.++   .+.||.+......  ..+..         +.........++.|       +
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~~dg---~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~  108 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGGSDG---VIVLYDLENSSRQ--SYYTCKAVCSIGRDHPDVHRYSVETVQW-------Y  108 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEETTS---CEEEEECCCCSSS--SCEEECEEEEECTTCTTCCSSCEEEEEE-------C
T ss_pred             ccCCcEEEEEEecCCCCEEEEEcCCC---eEEEEECCCCccc--ceEeccccccccccccccCCCcEEEEEE-------c
Confidence            3888999999999 999999999887   5677776654431  11110         00012233467777       5


Q ss_pred             C-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC--CcEEE
Q 010769          207 E-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF--RNILA  283 (502)
Q Consensus       207 ~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~~l~  283 (502)
                      | ++++|++|+.||.|++|++.......                           . ..+...+.++.|++.+  ..+|+
T Consensus       109 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------------------------~-~~~~~~~~~~~~~~~~~~~~~~~  160 (408)
T 4a11_B          109 PHDTGMFTSSSFDKTLKVWDTNTLQTAD---------------------------V-FNFEETVYSHHMSPVSTKHCLVA  160 (408)
T ss_dssp             TTCTTCEEEEETTSEEEEEETTTTEEEE---------------------------E-EECSSCEEEEEECSSCSSCCEEE
T ss_pred             cCCCcEEEEEeCCCeEEEeeCCCCccce---------------------------e-ccCCCceeeeEeecCCCCCcEEE
Confidence            6 78899999999999999997532211                           1 1366789999999863  34999


Q ss_pred             EEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce---------------
Q 010769          284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---------------  348 (502)
Q Consensus       284 sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---------------  348 (502)
                      +|+.+|.|++||+.+++.+..+..|...|.+++|+|++..+|++++.||.|++||++........               
T Consensus       161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  240 (408)
T 4a11_B          161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA  240 (408)
T ss_dssp             EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred             EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence            99999999999999999999999999999999999999557999999999999999876522211               


Q ss_pred             -EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769          349 -WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       349 -~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                       ..+...|.+++|+|++. ++++++.||.|++||+++.......    ...........+. +.+.......+++++.++
T Consensus       241 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  314 (408)
T 4a11_B          241 NTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVN----YGKVCNNSKKGLK-FTVSCGCSSEFVFVPYGS  314 (408)
T ss_dssp             SCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCC----CCCCCCCCSSCCC-CEECCSSSSCEEEEEETT
T ss_pred             cccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceec----cccccccccccce-eEEecCCCceEEEEecCC
Confidence             35778899999999865 8999999999999999987321100    0000011111222 222222236677778899


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .|++||+.+++  .+..+.+|.+.|++++|+|+++ +|++|+.||.|++|++.+++.+...
T Consensus       315 ~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~  372 (408)
T 4a11_B          315 TIAVYTVYSGE--QITMLKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPSLYEPVPDD  372 (408)
T ss_dssp             EEEEEETTTCC--EEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEECC-------
T ss_pred             EEEEEECcCCc--ceeeeccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCCCCCccCCC
Confidence            99999999987  5777888999999999999999 5999999999999999998877543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.1e-33  Score=303.20  Aligned_cols=291  Identities=19%  Similarity=0.252  Sum_probs=238.8

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|.+.|.+++|+|++++|++|+.++   .+.||.+.....  ...+..|    .....|+.|       +|++++||+|+
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~g---~v~iwd~~~~~~--~~~~~~~----~~~v~~~~~-------s~~~~~l~~~~   74 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYSG---RVEIWNYETQVE--VRSIQVT----ETPVRAGKF-------IARKNWIIVGS   74 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTS---EEEEEETTTTEE--EEEEECC----SSCEEEEEE-------EGGGTEEEEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCC---EEEEEECCCCce--EEEEecC----CCcEEEEEE-------eCCCCEEEEEe
Confidence            4788999999999999999999876   455555443221  1111122    233478888       68999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .+|.|+||++.++.                           ....+.+|...|++++|+|+ +.+|++|+.||+|++|++
T Consensus        75 ~dg~i~vw~~~~~~---------------------------~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~  126 (814)
T 3mkq_A           75 DDFRIRVFNYNTGE---------------------------KVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNW  126 (814)
T ss_dssp             TTSEEEEEETTTCC---------------------------EEEEEECCSSCEEEEEECSS-SSEEEEEETTSEEEEEEG
T ss_pred             CCCeEEEEECCCCc---------------------------EEEEEecCCCCEEEEEEeCC-CCEEEEEcCCCEEEEEEC
Confidence            99999999997532                           22234579999999999999 568999999999999999


Q ss_pred             CCC-eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec-CCeEEEEeCC--CCCCEEEEEe
Q 010769          297 AAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESLAWDP--HAEHSFVVSL  372 (502)
Q Consensus       297 ~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~v~~~p--~~~~~l~~~~  372 (502)
                      .++ .....+.+|...|.+++|+|.++.+|++++.||.|++||++..........+. ..+.+++|+|  ++. ++++++
T Consensus       127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~  205 (814)
T 3mkq_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITAS  205 (814)
T ss_dssp             GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEEC
T ss_pred             CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEe
Confidence            987 77788889999999999999333899999999999999998877655444443 7899999999  655 899999


Q ss_pred             CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCE
Q 010769          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      .+|.|++||+++.         ..+..+..|...|++++|+|++ .+|++++.||.|++||+.+++  .+..+..|...+
T Consensus       206 ~dg~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~~~v  273 (814)
T 3mkq_A          206 DDLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERS  273 (814)
T ss_dssp             TTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCS--EEEEECCSSSSE
T ss_pred             CCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc--EEEEeecCCCcE
Confidence            9999999999886         6788889999999999999998 899999999999999999887  566777888999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       453 ~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      .+++|+|++..++++++.++.+.+|++.....
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          274 WCIATHPTGRKNYIASGFDNGFTVLSLGNDEP  305 (814)
T ss_dssp             EEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred             EEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence            99999999976545556677899999876543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-33  Score=275.45  Aligned_cols=250  Identities=23%  Similarity=0.360  Sum_probs=207.2

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||.|+||++....                         ......+.+|...|++++
T Consensus        15 ~~~~~-------s~~~~~l~~~~~dg~i~iw~~~~~~-------------------------~~~~~~~~~h~~~v~~~~   62 (379)
T 3jrp_A           15 HDAVL-------DYYGKRLATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHEGPVWRVD   62 (379)
T ss_dssp             EEEEE-------CSSSSEEEEEETTSCEEEEEEETTE-------------------------EEEEEEECCCSSCEEEEE
T ss_pred             EEEEE-------cCCCCEEEEEECCCcEEEEecCCCc-------------------------ceeeeEecCCCCcEEEEE
Confidence            67877       7899999999999999999986311                         223334568999999999


Q ss_pred             ecCC-CCcEEEEEecCCcEEEEECCCCe--eeEEeccCCCCeEEEEEcCC--CCcEEEEEECCCcEEEEeCCCCCCcc--
Q 010769          274 WNKE-FRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHSG--  346 (502)
Q Consensus       274 ~~~~-~~~~l~sgs~Dg~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~--  346 (502)
                      |+++ .+.+|++|+.||.|++||+.+++  .+..+..|...|.+++|+|+  + .+|++++.|+.|++||++......  
T Consensus        63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~  141 (379)
T 3jrp_A           63 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPI  141 (379)
T ss_dssp             ECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred             eCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeE
Confidence            9865 24699999999999999999987  77888889999999999999  6 899999999999999999874432  


Q ss_pred             ceEeecCCeEEEEeCCC------------CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769          347 FKWAVAADVESLAWDPH------------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      ....+...|.+++|+|.            ...++++++.||.|++||++.....     ......+.+|...|.+++|+|
T Consensus       142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~h~~~v~~~~~sp  216 (379)
T 3jrp_A          142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSP  216 (379)
T ss_dssp             EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECC
T ss_pred             EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-----eeeEEEEecccCcEeEEEECC
Confidence            34467889999999994            3458999999999999999876210     124567788999999999999


Q ss_pred             CC--CCEEEEEeCCCcEEEEECCCCCe---eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          415 LV--PNLLATGSTDKMVKLWDLSNNQP---SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       415 ~~--~~~l~t~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      ++  +.+|++++.||.|++||+.....   ..+.....|...|++++|+|++++ |++++.||.|++|++...
T Consensus       217 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-EEEEESSSSEEEEEEEET
T ss_pred             CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE-EEEecCCCcEEEEeCCCC
Confidence            93  39999999999999999998642   223333458889999999999995 888999999999999854

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.8e-33  Score=280.95  Aligned_cols=286  Identities=13%  Similarity=0.153  Sum_probs=220.6

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..+....++|++++|++|+.++   .+.||.+.  .......+..|    .....|++|       +|++++|++|+.|+
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~--~~~~~~~~~~h----~~~v~~~~~-------~~~~~~l~s~s~d~  161 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEG---DIKVLDSN--FNLQREIDQAH----VSEITKLKF-------FPSGEALISSSQDM  161 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTS---CEEEECTT--SCEEEEETTSS----SSCEEEEEE-------CTTSSEEEEEETTS
T ss_pred             CceEEEEEecCCCEEEEEECCC---CEEEEeCC--Ccceeeecccc----cCccEEEEE-------CCCCCEEEEEeCCC
Confidence            4455567899999999999887   44555443  32111111122    334478877       78999999999999


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .|++||+......                           ..+.+|...|.+++|+|+ +.+|++|+.||+|++||+.++
T Consensus       162 ~i~iwd~~~~~~~---------------------------~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          162 QLKIWSVKDGSNP---------------------------RTLIGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             EEEEEETTTCCCC---------------------------EEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTT
T ss_pred             eEEEEeCCCCcCc---------------------------eEEcCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCC
Confidence            9999999753322                           234579999999999999 569999999999999999999


Q ss_pred             eeeEEecc---CCCCeEEE---------------------EEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCC
Q 010769          300 KCNLTLEH---HTDKVQAV---------------------AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAAD  354 (502)
Q Consensus       300 ~~~~~~~~---h~~~v~~l---------------------~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~  354 (502)
                      +++..+..   |...|.++                     +|+|++ .+|++|+.||.|++||+++........ .+...
T Consensus       214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  292 (420)
T 3vl1_A          214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS  292 (420)
T ss_dssp             EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred             ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence            99988864   34445544                     457777 899999999999999999877654333 35678


Q ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      +.+++|+|++..++++|+.||.|++||+++.        ..++..+.. |...|+++.+. ++ .+|++++.|+.|++|+
T Consensus       293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSP--------ECPVGEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCT--------TSCSEEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEEEE
T ss_pred             ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC--------cCchhhhhccCCCCceEEEeC-CC-CEEEEecCCccEEEEe
Confidence            9999999988778999999999999999987        355677776 67788888665 45 7999999999999999


Q ss_pred             CCCCCe-------eEEEEecCCCCCEEEEEEcCCCC---cEEEEEeCCCcEEEEECCC
Q 010769          434 LSNNQP-------SCIASRNPKAGAVFSVAFSEDSP---FVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       434 ~~~~~~-------~~~~~~~~~~~~v~~~~~spd~~---~llasg~~dg~i~vwd~~~  481 (502)
                      +.....       ........|.+.|.+++|+|++.   . |++.|.+|.+.+|++..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~-l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          363 ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGE-VLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             ECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCE-EEEEETTTEEEEEESCC
T ss_pred             ccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcce-EEEEcCCceEEEEeccC
Confidence            877321       01223456788999999999998   6 44566789999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.5e-32  Score=258.07  Aligned_cols=281  Identities=20%  Similarity=0.341  Sum_probs=217.7

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010769          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      .+.|.|+|++ +||+|. ++   +++||....+..  ..+...|  .......|+.|       +|++++||+|+.||.|
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~---tV~iWd~~tg~~--~~~~~~~--~~~~~V~~v~~-------~~~~~~l~sgs~Dg~v   91 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DN---SVYLWSASSGDI--LQLLQME--QPGEYISSVAW-------IKEGNYLAVGTSSAEV   91 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TT---EEEEEETTTCCE--EEEEECC--STTCCEEEEEE-------CTTSSEEEEEETTSEE
T ss_pred             ceEEEECCCC-EEEEEe-CC---EEEEEECCCCCE--EEEEEec--CCCCeEEEEEE-------CCCCCEEEEEECCCcE
Confidence            5779999886 677664 54   455555443321  1111111  11223467777       7999999999999999


Q ss_pred             EEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC-e
Q 010769          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-K  300 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~-~  300 (502)
                      +||++.++.                           ....+.+|...+.++++.+   .+|++|+.++.+++|+.... .
T Consensus        92 ~iw~~~~~~---------------------------~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~  141 (318)
T 4ggc_A           92 QLWDVQQQK---------------------------RLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH  141 (318)
T ss_dssp             EEEETTTTE---------------------------EEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC
T ss_pred             EEeecCCce---------------------------eEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCce
Confidence            999997532                           2234457888888877764   48999999999999998876 4


Q ss_pred             eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc----ceEeecCCeEEEEeCCCCCCEEE--EEeCC
Q 010769          301 CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG----FKWAVAADVESLAWDPHAEHSFV--VSLED  374 (502)
Q Consensus       301 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~v~~~p~~~~~l~--~~~~d  374 (502)
                      .+..+.+|...+.++.|++.+ .+|++++.||.|++||+++++...    ....+.+.|.++.++|.+..++.  +++.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  220 (318)
T 4ggc_A          142 HVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  220 (318)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred             eEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence            567788999999999999999 899999999999999998765432    23345678999999998877654  45678


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE--eCCCcEEEEECCCCCeeEEEEecCCCCCE
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG--STDKMVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      +.|++||.+..          .......+...+..+.|+|.+ ..++++  +.|+.|++||+++++  ++..+.+|.+.|
T Consensus       221 ~~i~lwd~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~~--~~~~l~gH~~~V  287 (318)
T 4ggc_A          221 RHIRIWNVCSG----------ACLSAVDAHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRV  287 (318)
T ss_dssp             CEEEEEETTTC----------CEEEEEECSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCC--EEEEECCCSSCE
T ss_pred             CEEEEEecccc----------cccccccceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCCc--EEEEEcCCCCCE
Confidence            99999999875          234445677889999999998 555544  479999999999988  577888999999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       453 ~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ++++|+|++++ |++|+.||+|+|||+....
T Consensus       288 ~~l~~spdg~~-l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          288 LSLTMSPDGAT-VASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEEECTTSSC-EEEEETTTEEEEECCSCCC
T ss_pred             EEEEEcCCCCE-EEEEecCCeEEEEECCCCC
Confidence            99999999995 9999999999999997643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.6e-33  Score=268.81  Aligned_cols=285  Identities=16%  Similarity=0.212  Sum_probs=227.1

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCC-EEEEe
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~-~la~g  215 (502)
                      .|.+.|.+++|+|++++|++|+.++   .+.||.+.....   ...............|+.|       +|+++ +|++|
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~---~v~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~-------~~~~~~~l~~~   75 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDG---SLTVYKFDIQAK---NVDLLQSLRYKHPLLCCNF-------IDNTDLQIYVG   75 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTS---EEEEEEEETTTT---EEEEEEEEECSSCEEEEEE-------EESSSEEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCC---eEEEEEeCCCCc---cccceeeeecCCceEEEEE-------CCCCCcEEEEE
Confidence            4888999999999999999999886   667777765542   1111111122344578888       67899 99999


Q ss_pred             cCCCcEEEeeC-CCCCCCCceeeeCCcchhhhhhccccCCccccccccCC--cccceeeEEecCCCCcEEEEEecCCcEE
Q 010769          216 SMEPAIEIWDL-DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS--HTDSVLGLAWNKEFRNILASASADKQVK  292 (502)
Q Consensus       216 ~~dg~I~iwdl-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~l~sgs~Dg~v~  292 (502)
                      +.+|.|++|++ .....                            ..+.+  |...|.+++|+|  +.+|++++.|+.|+
T Consensus        76 ~~dg~i~~wd~~~~~~~----------------------------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~  125 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPSF----------------------------QALTNNEANLGICRICKYG--DDKLIAASWDGLIE  125 (342)
T ss_dssp             ETTSCEEEECSSSSSSE----------------------------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEE
T ss_pred             cCCCeEEEEEeccCCce----------------------------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEE
Confidence            99999999998 64211                            23446  999999999999  45999999999999


Q ss_pred             EEECCC---------CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-CCCcc--ceEeecCCeEEEEe
Q 010769          293 IWDVAA---------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSG--FKWAVAADVESLAW  360 (502)
Q Consensus       293 vwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~--~~~~~~~~v~~v~~  360 (502)
                      +||+.+         ++++..+. |...|.+++|+|++   +++++.++.|++||++. .....  ....+...+.+++|
T Consensus       126 iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~  201 (342)
T 1yfq_A          126 VIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL  201 (342)
T ss_dssp             EECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred             EEcccccccccccccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence            999988         77777777 89999999999865   99999999999999998 54322  23356778999999


Q ss_pred             CC-CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC---------CeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          361 DP-HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---------AVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       361 ~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      +| ++. ++++++.+|.|++|+++......   .......+..|..         .|.+++|+|++ .+|++++.||.|+
T Consensus       202 ~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~  276 (342)
T 1yfq_A          202 LPKEQE-GYACSSIDGRVAVEFFDDQGDDY---NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIIS  276 (342)
T ss_dssp             CSGGGC-EEEEEETTSEEEEEECCTTCCST---TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEE
T ss_pred             CCCCCC-EEEEEecCCcEEEEEEcCCCccc---ccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEE
Confidence            99 765 89999999999999998651000   0155667777755         99999999998 8999999999999


Q ss_pred             EEECCCCCeeEEEEecCC-CCCEEEEEEcCCCCcEEEEEeCCCc-EEEEE
Q 010769          431 LWDLSNNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIGGSKGK-LEIWD  478 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~-~~~v~~~~~spd~~~llasg~~dg~-i~vwd  478 (502)
                      +||+.+++  .+..+..| .+.|.+++  |++. +|++|+.||. .+.|.
T Consensus       277 vwd~~~~~--~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          277 CWNLQTRK--KIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEETTTTE--EEEECCCCSSSEEEEEE--ECSS-EEEEEEECTHHHHCSS
T ss_pred             EEcCccHh--HhhhhhcccCCCceEec--CCCC-eEEEEecCCccccccc
Confidence            99999887  56677887 99999999  9998 5999999998 44444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.9e-33  Score=281.29  Aligned_cols=257  Identities=16%  Similarity=0.202  Sum_probs=199.5

Q ss_pred             cceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee
Q 010769          193 PLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      ..|++|       +| ++++||+|+.||.|+|||+...+.                         .....+.+|.+.|++
T Consensus       122 V~~l~~-------~P~~~~~lasGs~dg~i~lWd~~~~~~-------------------------~~~~~~~gH~~~V~~  169 (435)
T 4e54_B          122 ATSLAW-------HPTHPSTVAVGSKGGDIMLWNFGIKDK-------------------------PTFIKGIGAGGSITG  169 (435)
T ss_dssp             EEEEEE-------CSSCTTCEEEEETTSCEEEECSSCCSC-------------------------CEEECCCSSSCCCCE
T ss_pred             EEEEEE-------eCCCCCEEEEEeCCCEEEEEECCCCCc-------------------------eeEEEccCCCCCEEE
Confidence            478888       66 578999999999999999975322                         122345589999999


Q ss_pred             EEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc--CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE
Q 010769          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  349 (502)
                      |+|+|.++++|+||+.||+|++||+.++........  +...+.+++|+|++ .+|++|+.||.|++||++... .....
T Consensus       170 l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-~~~~~  247 (435)
T 4e54_B          170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-LWNLR  247 (435)
T ss_dssp             EEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-CCCSB
T ss_pred             EEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-eEEEe
Confidence            999996578999999999999999987655443333  34567899999999 899999999999999997644 33456


Q ss_pred             eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      .|...|.+++|+|++..++++|+.|+.|++||+++...      ........+|...|++++|+|++ .+|++++.||.|
T Consensus       248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~------~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i  320 (435)
T 4e54_B          248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG------KASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEI  320 (435)
T ss_dssp             CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS------SSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCE
T ss_pred             cccceEEeeeecCCCceEEEEecCcceeeEEecccccc------cceEEEeeeccccccceeECCCC-CeeEEEcCCCEE
Confidence            78899999999999888999999999999999998632      12333446799999999999998 899999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCC------CEEEEEEcCCCCcEEEEEe------------CCCcEEEEECCCCccccccccC
Q 010769          430 KLWDLSNNQPSCIASRNPKAG------AVFSVAFSEDSPFVLAIGG------------SKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~------~v~~~~~spd~~~llasg~------------~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +|||+.++..  ...+..|..      .+..+.|+|++.+ +++++            .++.|++||+.+++.+..++..
T Consensus       321 ~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~  397 (435)
T 4e54_B          321 RVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNL-IVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP  397 (435)
T ss_dssp             EEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSC-EEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS
T ss_pred             EEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCE-EEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC
Confidence            9999998763  333333221      2334556666653 33332            3467999999999988877654


Q ss_pred             CC
Q 010769          492 YS  493 (502)
Q Consensus       492 ~~  493 (502)
                      +.
T Consensus       398 ~~  399 (435)
T 4e54_B          398 ES  399 (435)
T ss_dssp             SC
T ss_pred             CC
Confidence            33

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-32  Score=292.71  Aligned_cols=250  Identities=22%  Similarity=0.315  Sum_probs=207.7

Q ss_pred             ceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          194 LCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .|++|       +++ +++|++|+.|++|+||++.......                      ......+.+|...|.++
T Consensus       386 ~~v~~-------~~~~~~~l~s~s~D~~i~~W~~~~~~~~~----------------------~~~~~~~~~h~~~v~~v  436 (694)
T 3dm0_A          386 TAIAT-------PIDNADIIVSASRDKSIILWKLTKDDKAY----------------------GVAQRRLTGHSHFVEDV  436 (694)
T ss_dssp             EEEEC-------CTTCCSEEEEEETTSEEEEEECCCSTTCS----------------------CEEEEEEECCSSCEEEE
T ss_pred             EEEEe-------cCCCCCEEEEEeCCCcEEEEEccCCCccc----------------------ccccceecCCCCcEEEE
Confidence            67766       554 6899999999999999997532211                      12223456899999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc---eE
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---KW  349 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~  349 (502)
                      +|+|+ +.+|++|+.||+|+|||+.+++++..+.+|...|.+++|+|++ .+|++|+.|++|++||+........   ..
T Consensus       437 ~~s~~-g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  514 (694)
T 3dm0_A          437 VLSSD-GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGE  514 (694)
T ss_dssp             EECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred             EECCC-CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence            99999 5699999999999999999999999999999999999999999 8899999999999999865432211   12


Q ss_pred             eecCCeEEEEeCCCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769          350 AVAADVESLAWDPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                      .|...|.+++|+|++. ..+++++.||.|++||+++.         .....+.+|...|++++|+|++ .+|++|+.||+
T Consensus       515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~  584 (694)
T 3dm0_A          515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---------KLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGV  584 (694)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSB
T ss_pred             CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCe
Confidence            4667899999999763 47999999999999999976         6778889999999999999998 99999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |++||+++++  .+..+.. ...|.+++|+|++. +|+++ .++.|+|||+.++..+....
T Consensus       585 i~iwd~~~~~--~~~~~~~-~~~v~~~~~sp~~~-~l~~~-~~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          585 VLLWDLAEGK--KLYSLEA-NSVIHALCFSPNRY-WLCAA-TEHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             CEEEETTTTE--EEECCBC-SSCEEEEEECSSSS-EEEEE-ETTEEEEEETTTTEEEEEEC
T ss_pred             EEEEECCCCc--eEEEecC-CCcEEEEEEcCCCc-EEEEE-cCCCEEEEECCCCCChhhhc
Confidence            9999999887  4445443 46799999999987 46555 46679999999988776543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-32  Score=273.13  Aligned_cols=295  Identities=18%  Similarity=0.281  Sum_probs=224.5

Q ss_pred             ccccccccCCCceEEE-EEecCCcceeEEEEEecCCC---CCCceeeeeccccCCCcceeeeecCCCCCCC-CCCEEEEe
Q 010769          141 DLEDMTINPNDAVIVC-ARNEDDVSHLEVYILEESDG---GDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMAVG  215 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~-~~~~~~~~~l~v~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~-~~~~la~g  215 (502)
                      ....+.++|+...+++ ++.++   .+.||.+.....   ....+..|.     ....+++|       +| ++++||+|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g---~i~v~~~~~~~~~~~~~~~~~~h~-----~~V~~~~~-------~p~~~~~l~s~  100 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGG---AFLVLPLGKTGRVDKNVPLVCGHT-----APVLDIAW-------CPHNDNVIASG  100 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSC---CEEEEETTCCEECCTTCCCBCCCS-----SCEEEEEE-------CTTCTTEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCC---EEEEEECccCCCCCCCCceEecCC-----CCEEEEEe-------CCCCCCEEEEE
Confidence            4456888888876665 45555   466666643321   011222232     22378888       67 89999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.||.|+||++........                    .......+.+|...|.+++|+|++.++|++|+.||+|++||
T Consensus       101 s~dg~v~vw~~~~~~~~~~--------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  160 (402)
T 2aq5_A          101 SEDCTVMVWEIPDGGLVLP--------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD  160 (402)
T ss_dssp             ETTSEEEEEECCTTCCSSC--------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEE
T ss_pred             eCCCeEEEEEccCCCCccc--------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE
Confidence            9999999999976432211                    01233455689999999999999667999999999999999


Q ss_pred             CCCCeeeEEe--ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce-EeecCC-eEEEEeCCCCCCEEEEE
Q 010769          296 VAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAVAAD-VESLAWDPHAEHSFVVS  371 (502)
Q Consensus       296 ~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~-v~~v~~~p~~~~~l~~~  371 (502)
                      +.+++++..+  ..|...|++++|+|++ .+|++++.||.|++||++++...... ..+.+. +.++.|+|++. ++++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g  238 (402)
T 2aq5_A          161 VGTGAAVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTG  238 (402)
T ss_dssp             TTTTEEEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE-EEEEE
T ss_pred             CCCCCccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc-EEEEe
Confidence            9999999999  8899999999999998 89999999999999999987766544 345554 89999999864 78888


Q ss_pred             ---eCCCeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCCe-eEEEEe
Q 010769          372 ---LEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLL-ATGSTDKMVKLWDLSNNQP-SCIASR  445 (502)
Q Consensus       372 ---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l-~t~s~dg~i~vwd~~~~~~-~~~~~~  445 (502)
                         +.++.|++||+++..        .++... ..|...+.+++|+|++ .+| ++|+.|+.|++|++.++++ ......
T Consensus       239 ~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~  309 (402)
T 2aq5_A          239 FSRMSERQVALWDTKHLE--------EPLSLQELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAPFLHYLSM  309 (402)
T ss_dssp             ECTTCCEEEEEEETTBCS--------SCSEEEECCCCSSCEEEEEETTT-TEEEEEETTCSCEEEEEECSSTTCEEEEEE
T ss_pred             ccCCCCceEEEEcCcccc--------CCceEEeccCCCceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCCcceEeecc
Confidence               789999999999862        333333 3577889999999998 555 5666899999999998873 222222


Q ss_pred             cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      ..|.+.|.+++|+|++.+ ++  +.++.+++|++.++..
T Consensus       310 ~~~~~~v~~~~~sp~~~~-~~--s~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          310 FSSKESQRGMGYMPKRGL-EV--NKCEIARFYKLHERKC  345 (402)
T ss_dssp             ECCSSCCSEEEECCGGGS-CG--GGTEEEEEEEEETTEE
T ss_pred             cccCCcccceEEeccccc-ce--ecceeEEEEEcCCCcE
Confidence            336789999999999985 54  3566999999988654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-32  Score=261.05  Aligned_cols=255  Identities=16%  Similarity=0.221  Sum_probs=196.7

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCC--CCCEEE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE--KGNFMA  213 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~--~~~~la  213 (502)
                      ..|.+.|.+++|+|++++||+|+.++   .++||.+..........+..|..    ...+++|       ++  ++++||
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~---~v~iw~~~~~~~~~~~~l~gH~~----~V~~v~~-------s~~~~g~~l~   71 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDK---TIKIFEVEGETHKLIDTLTGHEG----PVWRVDW-------AHPKFGTILA   71 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTS---CEEEEEBCSSCBCCCEEECCCSS----CEEEEEE-------CCGGGCSEEE
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCC---EEEEEecCCCCcEEEEEEccccC----CeEEEEe-------cCCCcCCEEE
Confidence            34888999999999999999999887   56777775432211122222322    2367777       43  489999


Q ss_pred             EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEEEEecCCcEE
Q 010769          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVK  292 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~Dg~v~  292 (502)
                      +|+.|++|+|||+.....                         .....+.+|...|.+++|+|+. +.+|++|+.|++|+
T Consensus        72 s~s~D~~v~iWd~~~~~~-------------------------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~  126 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGRW-------------------------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS  126 (297)
T ss_dssp             EEETTTEEEEEEBSSSCB-------------------------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             EEcCCCEEEEEEcCCCce-------------------------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence            999999999999874321                         1122345799999999999972 46999999999999


Q ss_pred             EEECCCCe--eeEEeccCCCCeEEEEEcCCC------------CcEEEEEECCCcEEEEeCCCCCC----ccceEeecCC
Q 010769          293 IWDVAAGK--CNLTLEHHTDKVQAVAWNHHS------------PQILLSGSFDRSVVMKDARISTH----SGFKWAVAAD  354 (502)
Q Consensus       293 vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~------------~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~  354 (502)
                      +||+.++.  ....+.+|...|.+++|+|.+            ..+|++|+.|++|++||++....    ...+..|...
T Consensus       127 ~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~  206 (297)
T 2pm7_B          127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW  206 (297)
T ss_dssp             EEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred             EEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc
Confidence            99998763  245677899999999999973            26899999999999999987652    2234467889


Q ss_pred             eEEEEeCCCC--CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE--ecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          355 VESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       355 v~~v~~~p~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      |.+++|+|++  ..+|++++.|++|++||++....      ......+  ..|...|.+++|+|++ .+|++++.|+.|+
T Consensus       207 V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~  279 (297)
T 2pm7_B          207 VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG------PWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVT  279 (297)
T ss_dssp             EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS------CCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEE
T ss_pred             eEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC------ccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEE
Confidence            9999999985  46899999999999999986421      0111222  4678899999999998 8999999999999


Q ss_pred             EEECCC
Q 010769          431 LWDLSN  436 (502)
Q Consensus       431 vwd~~~  436 (502)
                      ||+...
T Consensus       280 lw~~~~  285 (297)
T 2pm7_B          280 LWKENL  285 (297)
T ss_dssp             EEEECT
T ss_pred             EEEECC
Confidence            999764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.3e-32  Score=275.78  Aligned_cols=286  Identities=16%  Similarity=0.245  Sum_probs=225.3

Q ss_pred             Ccccc-ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          138 DSEDL-EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       138 ~~~~v-~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      |...+ .++.  +++++|++|+.++   .+++|.......  ...+..|    .....|+.|       ++++ +|++|+
T Consensus       120 h~~~v~~~~~--~~~~~l~sgs~dg---~i~vwd~~~~~~--~~~~~~h----~~~V~~l~~-------~~~~-~l~s~s  180 (464)
T 3v7d_B          120 HMTSVITCLQ--FEDNYVITGADDK---MIRVYDSINKKF--LLQLSGH----DGGVWALKY-------AHGG-ILVSGS  180 (464)
T ss_dssp             CSSSCEEEEE--EETTEEEEEETTS---CEEEEETTTTEE--EEEECCC----SSCEEEEEE-------CSTT-EEEEEE
T ss_pred             CCCCcEEEEE--ECCCEEEEEcCCC---cEEEEECCCCcE--EEEEeCC----CcCEEEEEE-------cCCC-EEEEEe
Confidence            55554 5444  4678999999887   456665433321  1111122    233477777       5666 999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC-CCcEEEEEecCCcEEEEE
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASASADKQVKIWD  295 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~sgs~Dg~v~vwd  295 (502)
                      .||.|++||+.++.                           ....+.+|...|.+++|++. .+.+|++|+.||+|++||
T Consensus       181 ~dg~i~vwd~~~~~---------------------------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd  233 (464)
T 3v7d_B          181 TDRTVRVWDIKKGC---------------------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  233 (464)
T ss_dssp             TTSCEEEEETTTTE---------------------------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEECCCCc---------------------------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence            99999999997532                           22345579999999999852 257999999999999999


Q ss_pred             CCCCee-----------------------eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769          296 VAAGKC-----------------------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       296 ~~~~~~-----------------------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      +.++..                       +..+.+|...|.++.  +++ .+|++|+.||.|++||+++.+.......|.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  310 (464)
T 3v7d_B          234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHT  310 (464)
T ss_dssp             CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            987652                       556788999998885  445 789999999999999999888776666788


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      ..|.+++|+|++. .+++|+.||.|++||++++         .++..+.+|...|.+++|++   .+|++++.||.|++|
T Consensus       311 ~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vw  377 (464)
T 3v7d_B          311 DRIYSTIYDHERK-RCISASMDTTIRIWDLENG---------ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGW  377 (464)
T ss_dssp             SCEEEEEEETTTT-EEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEE
T ss_pred             CCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------cEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEE
Confidence            9999999999866 8999999999999999986         78889999999999999984   799999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      |+.+...  .... .+...+..++|+|++. +|++|+ +|.|++||+.+++.+...+.
T Consensus       378 d~~~~~~--~~~~-~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~~~~~~  430 (464)
T 3v7d_B          378 DANDYSR--KFSY-HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHANIL  430 (464)
T ss_dssp             ETTTCCE--EEEE-ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEEESCTT
T ss_pred             ECCCCce--eeee-cCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEEehhhc
Confidence            9998763  2222 2556678889999998 577777 89999999999998876443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.3e-32  Score=309.75  Aligned_cols=294  Identities=17%  Similarity=0.288  Sum_probs=235.9

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|++++|++|+.++   .+.||....... ...+.. |    .....|++|       +|++++||+|
T Consensus       612 ~~h~~~v~~~~~s~~~~~l~s~~~d~---~i~vw~~~~~~~-~~~~~~-h----~~~v~~~~~-------s~~~~~l~s~  675 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQDGQRIASCGADK---TLQVFKAETGEK-LLDIKA-H----EDEVLCCAF-------SSDDSYIATC  675 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCCE-EEEECC-C----SSCEEEEEE-------CTTSSEEEEE
T ss_pred             ecccccEEEEEECCCCCEEEEEeCCC---eEEEEECCCCCE-EEEecc-C----CCCEEEEEE-------ecCCCEEEEE
Confidence            35889999999999999999999887   456665544321 001112 2    223367777       7999999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC-CCcEEEEEecCCcEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASASADKQVKIW  294 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~sgs~Dg~v~vw  294 (502)
                      +.||.|+|||+.++.                           ....+.+|...|.+++|+|+ ...++++|+.|++|++|
T Consensus       676 ~~d~~v~vwd~~~~~---------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw  728 (1249)
T 3sfz_A          676 SADKKVKIWDSATGK---------------------------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW  728 (1249)
T ss_dssp             ETTSEEEEEETTTCC---------------------------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred             eCCCeEEEEECCCCc---------------------------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence            999999999997532                           22344579999999999995 25589999999999999


Q ss_pred             ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce--------------------------
Q 010769          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--------------------------  348 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------------  348 (502)
                      |+.+++++..+.+|...|++++|+|++ .+|++++.||.|++||+++.......                          
T Consensus       729 d~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  807 (1249)
T 3sfz_A          729 DLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS  807 (1249)
T ss_dssp             ETTSSSEEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC
T ss_pred             ECCCcchhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEEC
Confidence            999999999999999999999999998 89999999999999998765321100                          


Q ss_pred             -----------------------------EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE
Q 010769          349 -----------------------------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       349 -----------------------------~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  399 (502)
                                                   ..+...+.+++|+|++. ++++++.+|.|++|++.+.         ..+..
T Consensus       808 ~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~---------~~~~~  877 (1249)
T 3sfz_A          808 ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDSR---------LKVAD  877 (1249)
T ss_dssp             TTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTTT---------EEEEE
T ss_pred             CCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC---------ceeee
Confidence                                         03456788999999865 8999999999999999876         67788


Q ss_pred             EecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC------------------------------------------
Q 010769          400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN------------------------------------------  437 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~------------------------------------------  437 (502)
                      +.+|...|++++|+|++ .+|++++.||.|++|++...                                          
T Consensus       878 ~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  956 (1249)
T 3sfz_A          878 CRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI  956 (1249)
T ss_dssp             ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred             cCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence            88999999999999987 88999999999999985320                                          


Q ss_pred             -----------------------------------CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          438 -----------------------------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       438 -----------------------------------~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                                                         .........+|.+.|++++|+|++++ |++++.||.|++|++.++
T Consensus       957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A          957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT-LISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp             EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSC-EEEECSSSBEEEEETTTT
T ss_pred             EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCE-EEEEcCCCEEEEEECCCC
Confidence                                               00123344578889999999999995 889999999999999988


Q ss_pred             ccc
Q 010769          483 AGI  485 (502)
Q Consensus       483 ~~~  485 (502)
                      ..+
T Consensus      1036 ~~~ 1038 (1249)
T 3sfz_A         1036 DYV 1038 (1249)
T ss_dssp             EEE
T ss_pred             ceE
Confidence            765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-33  Score=286.07  Aligned_cols=238  Identities=12%  Similarity=0.135  Sum_probs=184.6

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-----CcE
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-----RNI  281 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-----~~~  281 (502)
                      |++++||+|+.|++|+||++.......                       .....+.+|.+.|++|+|+|.+     +.+
T Consensus       171 ~~~~~laS~s~D~tI~iWd~~~~~~~~-----------------------~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~  227 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQIFKMNTSTLHC-----------------------VKVQTIVHSFGEVWDLKWHEGCHAPHLVGC  227 (524)
T ss_dssp             -----------CEEEEEEEEETTTCCE-----------------------EEEEEEEECCCSEEEEEECSSCCCSSSSCE
T ss_pred             hhhhhhccCCCCceEEEEEccCCCCCc-----------------------eEEEEEEecCCcEEEEEECCCCCCCCCCce
Confidence            444555667788999999986533210                       0111234678899999999962     469


Q ss_pred             EEEEecCCcEEEEECCCCee-----------eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceE
Q 010769          282 LASASADKQVKIWDVAAGKC-----------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKW  349 (502)
Q Consensus       282 l~sgs~Dg~v~vwd~~~~~~-----------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~  349 (502)
                      ||+|+.||+|+|||+.++..           ...+.+|...|++++|++.+  .|++|+.||+|++||++++.... ...
T Consensus       228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~  305 (524)
T 2j04_B          228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQ  305 (524)
T ss_dssp             EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEE
T ss_pred             EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEee
Confidence            99999999999999987642           24678899999999999854  79999999999999999765433 355


Q ss_pred             eecCCeEEE--EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC--CeeEEEEcCCCCCEEEEEeC
Q 010769          350 AVAADVESL--AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       350 ~~~~~v~~v--~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~  425 (502)
                      .|...|.+|  +|+|++..+|++++.||+|++||+++.         .++..+.+|..  .|.+++|+|++ ..|++++.
T Consensus       306 ~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~---------~~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~  375 (524)
T 2j04_B          306 VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI---------ATTKTTVSRFRGSNLVPVVYCPQI-YSYIYSDG  375 (524)
T ss_dssp             CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH---------HHHCEEEEECSCCSCCCEEEETTT-TEEEEECS
T ss_pred             cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC---------CcccccccccccCcccceEeCCCc-CeEEEeCC
Confidence            788999999  567765468999999999999999976         55556666653  58899999998 78999999


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      |++|++||++++.  ++..+.+|.+.|++++|+|++++ |++|+.||+|++||+...
T Consensus       376 d~tv~lwd~~~~~--~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          376 ASSLRAVPSRAAF--AVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAARR  429 (524)
T ss_dssp             SSEEEEEETTCTT--CCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCSS
T ss_pred             CCcEEEEECcccc--cceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechHh
Confidence            9999999999877  34556679999999999999994 899999999999998653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.2e-32  Score=271.92  Aligned_cols=245  Identities=22%  Similarity=0.303  Sum_probs=201.9

Q ss_pred             CCCCC-EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          206 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +|+.. ++++|+.+|.|+||++......                       ......+.+|...|++++|+|.++.+|++
T Consensus        43 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s   99 (402)
T 2aq5_A           43 NPKFMALICEASGGGAFLVLPLGKTGRV-----------------------DKNVPLVCGHTAPVLDIAWCPHNDNVIAS   99 (402)
T ss_dssp             CSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------CTTCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred             CCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------CCCCceEecCCCCEEEEEeCCCCCCEEEE
Confidence            55543 4445889999999999642111                       12223456899999999999933779999


Q ss_pred             EecCCcEEEEECCCC-------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce--EeecCCe
Q 010769          285 ASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADV  355 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v  355 (502)
                      |+.||+|+||++.++       +++..+.+|...|.+++|+|++.++|++++.||.|++||+++++.....  ..|...|
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  179 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI  179 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence            999999999999987       6678889999999999999998679999999999999999988766544  4578899


Q ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-ecCCCC-eeEEEEcCCCCCEEEEE---eCCCcEE
Q 010769          356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKA-VCTISYNPLVPNLLATG---STDKMVK  430 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~-v~~l~~sp~~~~~l~t~---s~dg~i~  430 (502)
                      .+++|+|++. +|++++.||.|++||+++.         ..+..+ ..|.+. +.++.|+|++ .+|++|   +.|+.|+
T Consensus       180 ~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~  248 (402)
T 2aq5_A          180 YSVDWSRDGA-LICTSCRDKRVRVIEPRKG---------TVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVA  248 (402)
T ss_dssp             EEEEECTTSS-CEEEEETTSEEEEEETTTT---------EEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEE
T ss_pred             EEEEECCCCC-EEEEEecCCcEEEEeCCCC---------ceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEE
Confidence            9999999765 7999999999999999986         666777 688776 8999999997 889998   7899999


Q ss_pred             EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      +||+++...........+...+.+++|+|++.+++++|+.||.|++|++.+++.
T Consensus       249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            999998764222333356678999999999997556777899999999999885

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.4e-32  Score=274.65  Aligned_cols=280  Identities=21%  Similarity=0.382  Sum_probs=219.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.++.+  ++++|++|+.++   .+.+|.......  ...+..|.    ....|+.|         ++++|++|+
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg---~i~iwd~~~~~~--~~~~~~h~----~~v~~l~~---------~~~~l~sg~  190 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDN---TIKIWDKNTLEC--KRILTGHT----GSVLCLQY---------DERVIITGS  190 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSS---CEEEEESSSCCE--EEEECCCS----SCEEEEEC---------CSSEEEEEE
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCC---eEEEEeCCCCeE--EEEEcCCC----CcEEEEEE---------CCCEEEEEc
Confidence            45667877766  899999999887   456665543221  11122222    22356654         688999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .||.|+|||+.++..                           ...+.+|...|.+++|++.   +|++|+.||+|++||+
T Consensus       191 ~dg~i~vwd~~~~~~---------------------------~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~  240 (435)
T 1p22_A          191 SDSTVRVWDVNTGEM---------------------------LNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDM  240 (435)
T ss_dssp             TTSCEEEEESSSCCE---------------------------EEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEEC
T ss_pred             CCCeEEEEECCCCcE---------------------------EEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeC
Confidence            999999999975322                           2344579999999999754   8999999999999999


Q ss_pred             CCCeee---EEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769          297 AAGKCN---LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       297 ~~~~~~---~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      .++...   ..+.+|...|.+++|  ++ .+|++|+.||.|++||++++........+...+.++.|++   .++++|+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~g~~  314 (435)
T 1p22_A          241 ASPTDITLRRVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSS  314 (435)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEET
T ss_pred             CCCCCceeeeEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC---CEEEEEeC
Confidence            987655   677889999999999  44 7899999999999999999887776777889999999953   48999999


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-------eEEEEec
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------SCIASRN  446 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-------~~~~~~~  446 (502)
                      ||.|++||++++         .++..+.+|...|.+++|.  + .+|++|+.||.|++||+.++..       .++..+.
T Consensus       315 dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  382 (435)
T 1p22_A          315 DNTIRLWDIECG---------ACLRVLEGHEELVRCIRFD--N-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV  382 (435)
T ss_dssp             TSCEEEEETTTC---------CEEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred             CCeEEEEECCCC---------CEEEEEeCCcCcEEEEEec--C-CEEEEEeCCCcEEEEECCCCCCccccccchheeecc
Confidence            999999999986         7788899999999999993  3 8999999999999999865431       1577788


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      .|.+.|++++|  ++. .|++|+.||.|++||+.+......
T Consensus       383 ~h~~~v~~l~~--~~~-~l~s~s~Dg~i~iwd~~~~~~~~~  420 (435)
T 1p22_A          383 EHSGRVFRLQF--DEF-QIVSSSHDDTILIWDFLNDPAAQA  420 (435)
T ss_dssp             CCSSCCCCEEE--CSS-CEEECCSSSEEEEEC---------
T ss_pred             CCCCCeEEEEe--CCC-EEEEEeCCCEEEEEECCCCCCccc
Confidence            99999999999  566 489999999999999988766543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-33  Score=276.61  Aligned_cols=250  Identities=14%  Similarity=0.157  Sum_probs=192.7

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..|++|       +|++++||+|+.|+.|+||++....                         ......+.+|...|+++
T Consensus        14 v~~~~~-------s~~g~~l~~~~~d~~i~iw~~~~~~-------------------------~~~~~~~~~h~~~v~~~   61 (377)
T 3dwl_C           14 SYEHAF-------NSQRTEFVTTTATNQVELYEQDGNG-------------------------WKHARTFSDHDKIVTCV   61 (377)
T ss_dssp             CSCCEE-------CSSSSEEECCCSSSCBCEEEEETTE-------------------------EEECCCBCCCSSCEEEE
T ss_pred             EEEEEE-------CCCCCEEEEecCCCEEEEEEccCCc-------------------------eEEEEEEecCCceEEEE
Confidence            367777       7999999999999999999986421                         12333456899999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCe---eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC---cc
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SG  346 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~  346 (502)
                      +|+|+ +++|++|+.|++|++||+.+++   +...+..|...|.+++|+|++ .+|++++.|+.|++||++....   ..
T Consensus        62 ~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~  139 (377)
T 3dwl_C           62 DWAPK-SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSK  139 (377)
T ss_dssp             EECTT-TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCE
T ss_pred             EEeCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeee
Confidence            99999 5699999999999999999877   677788899999999999998 8999999999999999998763   33


Q ss_pred             ceEe-ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC---------CCCCccEEEecCCCCeeEEEEcCCC
Q 010769          347 FKWA-VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS---------TSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       347 ~~~~-~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      .... |...|.+++|+|++. ++++++.||.|++||++........         ....++..+ .|...|++++|+|++
T Consensus       140 ~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~  217 (377)
T 3dwl_C          140 HLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG  217 (377)
T ss_dssp             EECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS
T ss_pred             EeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC
Confidence            3334 788999999999765 8999999999999999743211100         001234444 899999999999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCe--eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          417 PNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                       .+|++++.|+.|++||+.+++.  ..+..+..|...|.+++|+|++. +|++|+.++ +.+|+...
T Consensus       218 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~-~~~~~~~~  281 (377)
T 3dwl_C          218 -NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYS-PILLQGNE  281 (377)
T ss_dssp             -SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSS-EEEECCCC
T ss_pred             -CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCc-EEEEEeCC
Confidence             8999999999999999998874  12566778999999999999998 477776655 45777653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=292.21  Aligned_cols=169  Identities=14%  Similarity=0.180  Sum_probs=128.6

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      |...|.+++|+| +++|++++.++   .++||.+....    .+..+.   .+....|+.|       +|++++|++|+.
T Consensus        57 ~~~~V~~l~fsp-g~~L~S~s~D~---~v~lWd~~~~~----~~~~~~---~~~~V~~v~~-------sp~g~~l~sgs~  118 (902)
T 2oaj_A           57 DRSAIKEMRFVK-GIYLVVINAKD---TVYVLSLYSQK----VLTTVF---VPGKITSIDT-------DASLDWMLIGLQ  118 (902)
T ss_dssp             SCCCEEEEEEET-TTEEEEEETTC---EEEEEETTTCS----EEEEEE---CSSCEEEEEC-------CTTCSEEEEEET
T ss_pred             CCCCEEEEEEcC-CCEEEEEECcC---eEEEEECCCCc----EEEEEc---CCCCEEEEEE-------CCCCCEEEEEcC
Confidence            567899999999 88999998876   56666654432    222111   2233466666       899999999999


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccc-cccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIK-YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      ||.|++||+...... +..+ .               ..... ..+.+|...|++|+|+|++..+|++|+.||+| +||+
T Consensus       119 dg~V~lwd~~~~~~~-~~~i-~---------------~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~  180 (902)
T 2oaj_A          119 NGSMIVYDIDRDQLS-SFKL-D---------------NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL  180 (902)
T ss_dssp             TSCEEEEETTTTEEE-EEEE-C---------------CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred             CCcEEEEECCCCccc-ccee-c---------------cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence            999999999754321 1000 0               00000 23468999999999999756789999999999 9999


Q ss_pred             CCCeeeEEeccC------------------CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769          297 AAGKCNLTLEHH------------------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       297 ~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  343 (502)
                      .+++++..+..|                  ...|++++|+|++ .+|++|+.||+|++||+++++
T Consensus       181 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          181 VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCC
T ss_pred             CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCc
Confidence            999998888765                  5789999999998 899999999999999997654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.7e-32  Score=265.89  Aligned_cols=248  Identities=17%  Similarity=0.224  Sum_probs=204.9

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|+.|       +|++++||+|+.++.|+||++....                         ......+.+|...|.+++
T Consensus        12 ~~~~~-------s~~~~~l~~~~~d~~v~i~~~~~~~-------------------------~~~~~~~~~h~~~v~~~~   59 (372)
T 1k8k_C           12 SCHAW-------NKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHNGQVTGVD   59 (372)
T ss_dssp             CEEEE-------CTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEeCCCEEEEEeCCCCc-------------------------EEeeeeecCCCCcccEEE
Confidence            67777       7899999999999999999986421                         112334557999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc----cc
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS----GF  347 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~  347 (502)
                      |+|+ +.+|++|+.||.|++||+.+++....  +..|...|.+++|+|++ .+|++++.++.|++||++.....    ..
T Consensus        60 ~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  137 (372)
T 1k8k_C           60 WAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHI  137 (372)
T ss_dssp             EETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             EeCC-CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence            9998 56999999999999999998875444  46789999999999998 89999999999999999987642    11


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC---------CCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD---------STSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      ...+...|.+++|+|++. ++++++.+|.|++||++.......         ......+..+..|...|.+++|+|++ .
T Consensus       138 ~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~  215 (372)
T 1k8k_C          138 KKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-S  215 (372)
T ss_dssp             CTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-S
T ss_pred             ecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-C
Confidence            234578899999999765 899999999999999763211100         01136677778899999999999998 8


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      +|++++.|+.|++||+++++  .+..+..|..+|.+++|+|++. +|++| .++.|++|++.+
T Consensus       216 ~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          216 RVAWVSHDSTVCLADADKKM--AVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEETTTEEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred             EEEEEeCCCEEEEEECCCCc--eeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccC
Confidence            99999999999999999887  5666778888999999999998 46666 899999999988

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.1e-32  Score=268.31  Aligned_cols=250  Identities=15%  Similarity=0.236  Sum_probs=209.3

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|  ++|++|+.||.|+||++.......+                     ......+.+|...|++++
T Consensus        20 ~~~~~-------~~--~~l~s~~~dg~i~iw~~~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~   69 (397)
T 1sq9_A           20 FSVSA-------CN--SFTVSCSGDGYLKVWDNKLLDNENP---------------------KDKSYSHFVHKSGLHHVD   69 (397)
T ss_dssp             EEEEE-------CS--SEEEEEETTSEEEEEESBCCTTCCG---------------------GGGEEEEECCTTCEEEEE
T ss_pred             EEEEe-------cC--CeEEEEcCCCEEEEEECCCcccccC---------------------CCcceEEecCCCcEEEEE
Confidence            68888       45  8999999999999999976432211                     223344558999999999


Q ss_pred             ecCC---CC---cEEEEEecCCcEEEEECCCCee-----eEEeccC-----CCCeEEEEEc----CCCCcE-EEEEECCC
Q 010769          274 WNKE---FR---NILASASADKQVKIWDVAAGKC-----NLTLEHH-----TDKVQAVAWN----HHSPQI-LLSGSFDR  332 (502)
Q Consensus       274 ~~~~---~~---~~l~sgs~Dg~v~vwd~~~~~~-----~~~~~~h-----~~~v~~l~~~----~~~~~~-l~s~~~dg  332 (502)
                      |+|+   .+   .+|++|+.||.|++|++.+++.     +..+..|     ...|.+++|+    |++ .+ |++++.||
T Consensus        70 ~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg  148 (397)
T 1sq9_A           70 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKG  148 (397)
T ss_dssp             EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTS
T ss_pred             EecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCC
Confidence            9998   23   5899999999999999998887     8888888     5999999999    988 77 99999999


Q ss_pred             cEEEEeCCC------CCCcc-----ceE-------eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCC
Q 010769          333 SVVMKDARI------STHSG-----FKW-------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ  394 (502)
Q Consensus       333 ~i~vwd~~~------~~~~~-----~~~-------~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  394 (502)
                      .|++||++.      .....     ...       .+...+.+++|+|++  ++++++.+|.|++||+++.         
T Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~---------  217 (397)
T 1sq9_A          149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTL---------  217 (397)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTT---------
T ss_pred             cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCC---------
Confidence            999999998      55443     332       257789999999986  8999999999999999986         


Q ss_pred             CccEEEec---C---CCCeeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCCeeEEEEecC-------------CCCCE
Q 010769          395 QSSFTLHA---H---DKAVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQPSCIASRNP-------------KAGAV  452 (502)
Q Consensus       395 ~~~~~~~~---h---~~~v~~l~~sp~~~~~l~t~s~d---g~i~vwd~~~~~~~~~~~~~~-------------~~~~v  452 (502)
                      .++..+..   |   ...|.+++|+|++ .+|++++.|   +.|++||+++++  .+..+..             |...|
T Consensus       218 ~~~~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v  294 (397)
T 1sq9_A          218 RPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWV  294 (397)
T ss_dssp             EEEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCC--EEEEECBC--------CCBSBSSCE
T ss_pred             ceeEEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCc--ccceeccCcccccccccccccCCcE
Confidence            67788888   9   9999999999998 899999999   999999999887  4555666             88999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       453 ~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .+++|+|+++ +|++++.||.|+|||+.+++.+....
T Consensus       295 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          295 MSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCC-EEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            9999999999 58999999999999999998877665

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.1e-32  Score=264.75  Aligned_cols=254  Identities=20%  Similarity=0.265  Sum_probs=194.4

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCC--CCCEE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDRE--KGNFM  212 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~--~~~~l  212 (502)
                      ..|.+.|.+++|+|++++||+|+.++   .++||.+...... ...+..|.     ....+++|       ++  ++++|
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~---~v~lwd~~~~~~~~~~~l~gH~-----~~V~~v~~-------~~~~~~~~l   74 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDR---SVKIFDVRNGGQILIADLRGHE-----GPVWQVAW-------AHPMYGNIL   74 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTT---EEEEEEEETTEEEEEEEEECCS-----SCEEEEEE-------CCGGGSSCE
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCC---eEEEEEecCCCcEEEEEEcCCC-----ccEEEEEe-------CCCCCCCEE
Confidence            45889999999999999999999887   6788877654210 00122232     23367777       43  48999


Q ss_pred             EEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEEEEecCCcE
Q 010769          213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQV  291 (502)
Q Consensus       213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~Dg~v  291 (502)
                      |+|+.|++|+|||+.....                         .....+.+|...|++++|+|+. +.+|++|+.|++|
T Consensus        75 ~s~s~D~~v~iWd~~~~~~-------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i  129 (316)
T 3bg1_A           75 ASCSYDRKVIIWREENGTW-------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI  129 (316)
T ss_dssp             EEEETTSCEEEECCSSSCC-------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred             EEEECCCEEEEEECCCCcc-------------------------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence            9999999999999864211                         1122345799999999999973 4689999999999


Q ss_pred             EEEECCCCe---eeEEeccCCCCeEEEEEcCCC----------------CcEEEEEECCCcEEEEeCCCCC---CccceE
Q 010769          292 KIWDVAAGK---CNLTLEHHTDKVQAVAWNHHS----------------PQILLSGSFDRSVVMKDARIST---HSGFKW  349 (502)
Q Consensus       292 ~vwd~~~~~---~~~~~~~h~~~v~~l~~~~~~----------------~~~l~s~~~dg~i~vwd~~~~~---~~~~~~  349 (502)
                      ++|++..+.   ....+.+|...|.+++|+|+.                ..+|++|+.|++|++||++...   ....+.
T Consensus       130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~  209 (316)
T 3bg1_A          130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE  209 (316)
T ss_dssp             EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred             EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence            999998763   245567899999999999973                2689999999999999997542   233345


Q ss_pred             eecCCeEEEEeCCCC---CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCC
Q 010769          350 AVAADVESLAWDPHA---EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      .|...|.+++|+|++   ..+|++++.||+|++|+++.....     ......+..|...|.+++|+|++ .+|++++.|
T Consensus       210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~-----~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D  283 (316)
T 3bg1_A          210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN-----TWSPKLLHKFNDVVWHVSWSITA-NILAVSGGD  283 (316)
T ss_dssp             CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC-----CCBCCEEEECSSCEEEEEECTTT-CCEEEEESS
T ss_pred             cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc-----chhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCC
Confidence            688899999999975   358999999999999999863110     11234456789999999999998 899999999


Q ss_pred             CcEEEEECC
Q 010769          427 KMVKLWDLS  435 (502)
Q Consensus       427 g~i~vwd~~  435 (502)
                      ++|+||+..
T Consensus       284 ~~v~lw~~~  292 (316)
T 3bg1_A          284 NKVTLWKES  292 (316)
T ss_dssp             SCEEEEEEC
T ss_pred             CeEEEEEEC
Confidence            999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.4e-31  Score=267.00  Aligned_cols=280  Identities=21%  Similarity=0.350  Sum_probs=225.8

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|.+.|.. ++.+++++|++|+.++   .+.+|.+.....  ...+..|.    ....++.|         ++++|++|+
T Consensus       116 ~h~~~v~~-~~~~~g~~l~sg~~dg---~i~vwd~~~~~~--~~~~~~h~----~~v~~~~~---------~~~~l~s~~  176 (445)
T 2ovr_B          116 GHDDHVIT-CLQFCGNRIVSGSDDN---TLKVWSAVTGKC--LRTLVGHT----GGVWSSQM---------RDNIIISGS  176 (445)
T ss_dssp             CSTTSCEE-EEEEETTEEEEEETTS---CEEEEETTTCCE--EEECCCCS----SCEEEEEE---------ETTEEEEEE
T ss_pred             ccCCCcEE-EEEEcCCEEEEEECCC---cEEEEECCCCcE--EEEEcCCC----CCEEEEEe---------cCCEEEEEe
Confidence            36665533 4666799999999887   456665543321  11112222    22356665         377999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .||.|++||+..+.                           ....+.+|...|.+++|++.   .|++|+.||+|++||+
T Consensus       177 ~dg~i~vwd~~~~~---------------------------~~~~~~~h~~~v~~~~~~~~---~l~s~s~dg~i~~wd~  226 (445)
T 2ovr_B          177 TDRTLKVWNAETGE---------------------------CIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDI  226 (445)
T ss_dssp             TTSCEEEEETTTTE---------------------------EEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEES
T ss_pred             CCCeEEEEECCcCc---------------------------EEEEECCCCCcEEEEEecCC---EEEEEeCCCEEEEEEC
Confidence            99999999997532                           22344579999999999743   7999999999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      .+++++..+.+|...|.++.|  ++ .++++|+.||.|++||+++.........+...+.+++|+   +..+++++.||.
T Consensus       227 ~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~  300 (445)
T 2ovr_B          227 ETGQCLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD---GIHVVSGSLDTS  300 (445)
T ss_dssp             SSCCEEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC---SSEEEEEETTSC
T ss_pred             CCCcEEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC---CCEEEEEeCCCe
Confidence            999999999999999999999  44 789999999999999999887766566788899999993   348999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC---CCCCEE
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP---KAGAVF  453 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~---~~~~v~  453 (502)
                      |++||++++         ..+..+.+|...+.++.+++   .+|++|+.||.|++||+++++.  +..+..   |...|+
T Consensus       301 i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~  366 (445)
T 2ovr_B          301 IRVWDVETG---------NCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQC--LQTLQGPNKHQSAVT  366 (445)
T ss_dssp             EEEEETTTC---------CEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCE--EEEECSTTSCSSCEE
T ss_pred             EEEEECCCC---------CEEEEEcCCcccEEEEEEeC---CEEEEEeCCCeEEEEECCCCcE--EEEEccCCCCCCCEE
Confidence            999999986         77888899999999998863   7999999999999999998874  445544   888999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          454 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       454 ~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +++|++  . +|++|+.||.|++||+.+++.+...
T Consensus       367 ~~~~~~--~-~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          367 CLQFNK--N-FVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             EEEECS--S-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEECC--C-EEEEEeCCCeEEEEECCCCceeeee
Confidence            999964  4 5999999999999999999888766

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.5e-31  Score=280.20  Aligned_cols=303  Identities=13%  Similarity=0.193  Sum_probs=237.2

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCceeeeeccccCCC-cceeeeecCCCCCCC--CCCE
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAF-PLCMAWLDCPLKDRE--KGNF  211 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~-~~~~~w~~~~~~~s~--~~~~  211 (502)
                      .|...|.+++|+|++++|++++ ++   .+.||.+.....  .....+..|    ... +.|++|       +|  ++++
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~---~v~v~~~~~~~~~~~~~~~~~~h----~~~~v~~~~~-------sp~~~~~~   80 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GK---SAFVRCLDDGDSKVPPVVQFTGH----GSSVVTTVKF-------SPIKGSQY   80 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TT---EEEEEECCSSCCSSCSEEEECTT----TTSCEEEEEE-------CSSTTCCE
T ss_pred             CccCceeEEEECCCCCEEEEec-CC---eEEEEECCCCCCccccceEEecC----CCceEEEEEE-------CcCCCCCE
Confidence            3678899999999999999998 43   566666654310  111112222    222 467777       78  9999


Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC---
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD---  288 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D---  288 (502)
                      ||+|+.||.|+||++........                   ........+..|...|.+++|+|+ +.+|++++.+   
T Consensus        81 l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~  140 (615)
T 1pgu_A           81 LCSGDESGKVIVWGWTFDKESNS-------------------VEVNVKSEFQVLAGPISDISWDFE-GRRLCVVGEGRDN  140 (615)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTE-------------------EEEEEEEEEECCSSCEEEEEECTT-SSEEEEEECCSSC
T ss_pred             EEEecCCCEEEEEeCCCCccccc-------------------ccccccchhhcccccEEEEEEeCC-CCEEEEeccCCCC
Confidence            99999999999999953210000                   012233345578999999999999 5688898887   


Q ss_pred             -CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC---CeEEEEeCCCC
Q 010769          289 -KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA---DVESLAWDPHA  364 (502)
Q Consensus       289 -g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~v~~~p~~  364 (502)
                       +.|++||  .++.+..+.+|...|.+++|+|++..+|++++.|+.|++||+++.+.......+..   .|.+++|+|++
T Consensus       141 ~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (615)
T 1pgu_A          141 FGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS  218 (615)
T ss_dssp             SEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred             ccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC
Confidence             6888888  67788899999999999999999955899999999999999988776665556777   89999999982


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-e---cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-H---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      ..++++++.+|.|++||++++         ..+..+ .   .|...|.+++|+ ++ .+|++++.|+.|++||+.+++. 
T Consensus       219 ~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~-  286 (615)
T 1pgu_A          219 GEFVITVGSDRKISCFDGKSG---------EFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKC-  286 (615)
T ss_dssp             CCEEEEEETTCCEEEEETTTC---------CEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEE-
T ss_pred             CCEEEEEeCCCeEEEEECCCC---------CEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcE-
Confidence            348999999999999999886         666777 5   899999999999 66 9999999999999999998874 


Q ss_pred             EEEEecCC----CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          441 CIASRNPK----AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       441 ~~~~~~~~----~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                       +..+..+    ...+.++.|. ++. .+++++.+|.|++||+.+++.+....++
T Consensus       287 -~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~  338 (615)
T 1pgu_A          287 -VQKWTLDKQQLGNQQVGVVAT-GNG-RIISLSLDGTLNFYELGHDEVLKTISGH  338 (615)
T ss_dssp             -EEEEECCTTCGGGCEEEEEEE-ETT-EEEEEETTSCEEEEETTEEEEEEEECCC
T ss_pred             -EEEEcCCCCcccCceeEEEeC-CCC-eEEEEECCCCEEEEECCCCcEEEEEeCC
Confidence             4444444    3678888886 777 5889999999999999987776655443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.4e-32  Score=264.02  Aligned_cols=290  Identities=14%  Similarity=0.269  Sum_probs=222.8

Q ss_pred             CCCccccccccccCC---CceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEE
Q 010769          136 DEDSEDLEDMTINPN---DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM  212 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~---~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~l  212 (502)
                      ..|.+.|.+++|+|+   +++|++|+.++   .+.||.+..........+..|    .....++.|       +|++++|
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~-------~~~~~~l  101 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWAN---DVRCWEVQDSGQTIPKAQQMH----TGPVLDVCW-------SDDGSKV  101 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTS---EEEEEEECTTSCEEEEEEEEC----SSCEEEEEE-------CTTSSEE
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCC---cEEEEEcCCCCceeEEEeccc----cCCEEEEEE-------CcCCCEE
Confidence            468999999999999   59999999887   567777765332110112223    233467777       7899999


Q ss_pred             EEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEe--cCCCCcEEEEEecCCc
Q 010769          213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW--NKEFRNILASASADKQ  290 (502)
Q Consensus       213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~~l~sgs~Dg~  290 (502)
                      ++|+.||.|+|||+......                            .+.+|...|++++|  +|+ +.+|++|+.||.
T Consensus       102 ~s~~~dg~v~iwd~~~~~~~----------------------------~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~  152 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSNQAI----------------------------QIAQHDAPVKTIHWIKAPN-YSCVMTGSWDKT  152 (368)
T ss_dssp             EEEETTSEEEEEETTTTEEE----------------------------EEEECSSCEEEEEEEECSS-CEEEEEEETTSE
T ss_pred             EEEcCCCcEEEEEcCCCCce----------------------------eeccccCceEEEEEEeCCC-CCEEEEccCCCc
Confidence            99999999999999753211                            13369999999999  888 668999999999


Q ss_pred             EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE--eecCCeEEEEeCCCCC---
Q 010769          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAE---  365 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~---  365 (502)
                      |++||+.+++++..+..|. .+.++.+.+   ..+++++.++.+++|+++.........  .....+.++++.+...   
T Consensus       153 i~vwd~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (368)
T 3mmy_A          153 LKFWDTRSSNPMMVLQLPE-RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP  228 (368)
T ss_dssp             EEEECSSCSSCSEEEECSS-CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred             EEEEECCCCcEEEEEecCC-CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC
Confidence            9999999999998888654 677777775   468889999999999998764332111  2334455665544322   


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC------------CeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------AVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~------------~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      ..+++++.+|.|++|+++....      ...+..+..|..            +|++++|+|++ .+|++++.||.|++||
T Consensus       229 ~~~~~~~~dg~i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd  301 (368)
T 3mmy_A          229 TGFALGSIEGRVAIHYINPPNP------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWD  301 (368)
T ss_dssp             EEEEEEETTSEEEEEESSCSCH------HHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEE
T ss_pred             CeEEEecCCCcEEEEecCCCCc------cccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEE
Confidence            2399999999999999987521      145667777765            79999999998 8999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      +.+++  ++..+..|...|.+++|+|++.+ |++|+.|+..+.|++...
T Consensus       302 ~~~~~--~~~~~~~~~~~v~~~~~s~~g~~-l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          302 KDART--KLKTSEQLDQPISACCFNHNGNI-FAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             TTTTE--EEEECCCCSSCEEEEEECTTSSC-EEEEECCCSTTCGGGCCT
T ss_pred             CCCCc--EEEEecCCCCCceEEEECCCCCe-EEEEecccccccccccCC
Confidence            99887  57778889999999999999995 888888876665555443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.8e-32  Score=271.74  Aligned_cols=258  Identities=16%  Similarity=0.283  Sum_probs=198.2

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcc------
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT------  266 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~------  266 (502)
                      ..|++|       +|+|++||+|+.||.|+||++.......+                ...........+.+|.      
T Consensus        31 V~~v~~-------s~~g~~la~g~~dg~v~iw~~~~~~~~~~----------------~~~~~~~~~~~~~~h~~~~~~~   87 (447)
T 3dw8_B           31 ISTVEF-------NHSGELLATGDKGGRVVIFQQEQENKIQS----------------HSRGEYNVYSTFQSHEPEFDYL   87 (447)
T ss_dssp             EEEEEE-------CSSSSEEEEEETTSEEEEEEECC-----C----------------CCCCCEEEEEEEECCCCEEEGG
T ss_pred             EEEEEE-------CCCCCEEEEEcCCCeEEEEEecCCCCCCc----------------ccccceeEeccccccccccccc
Confidence            367777       79999999999999999999976432110                0001122344556787      


Q ss_pred             ------cceeeEEecCCCC-cEEEEEecCCcEEEEECCCCeee-------------------------------------
Q 010769          267 ------DSVLGLAWNKEFR-NILASASADKQVKIWDVAAGKCN-------------------------------------  302 (502)
Q Consensus       267 ------~~V~~l~~~~~~~-~~l~sgs~Dg~v~vwd~~~~~~~-------------------------------------  302 (502)
                            ..|++++|+|++. .+|++|+.|++|++|++.+++..                                     
T Consensus        88 ~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (447)
T 3dw8_B           88 KSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEAS  167 (447)
T ss_dssp             GTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEE
T ss_pred             ccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeecc
Confidence                  8899999999942 68999999999999999765432                                     


Q ss_pred             --EE-eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc--------eEeecCCeEEEEeCCCCCCEEEEE
Q 010769          303 --LT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--------KWAVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       303 --~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------~~~~~~~v~~v~~~p~~~~~l~~~  371 (502)
                        .. ..+|...|.+++|+|++ .+|++| .|+.|++||++.......        ...|...|.+++|+|++..+|++|
T Consensus       168 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          168 PRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS  245 (447)
T ss_dssp             EEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred             ceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence              12 36799999999999998 888888 799999999984332221        235778899999999885699999


Q ss_pred             eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC------------CeeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CC
Q 010769          372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------AVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQ  438 (502)
Q Consensus       372 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~------------~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~-~~  438 (502)
                      +.||.|++||+++....     ...+..+..|..            .|.+++|+|++ .+|++++. +.|++||++. ++
T Consensus       246 ~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~  318 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALC-----DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENR  318 (447)
T ss_dssp             ETTSCEEEEETTTCSSS-----CTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSS
T ss_pred             eCCCeEEEEECcCCccc-----cceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCcc
Confidence            99999999999987310     122677777775            89999999998 89999998 9999999987 55


Q ss_pred             eeEEEEecCCCCC---------------EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          439 PSCIASRNPKAGA---------------VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       439 ~~~~~~~~~~~~~---------------v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      +  +..+..|...               ++.++|+|++++ |++|+.||.|+|||+.+++.+
T Consensus       319 ~--~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          319 P--VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             C--SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECSTTEEEEEETTTCCEE
T ss_pred             c--cceeeccccccccccccccccccccceEEEECCCCCE-EEEeccCCEEEEEEcCCCcce
Confidence            3  3444445321               345999999995 899999999999999998775

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-30  Score=255.23  Aligned_cols=247  Identities=15%  Similarity=0.266  Sum_probs=210.3

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||.|+||++....                           ....+.+|...|.+++
T Consensus        36 ~~~~~-------s~~~~~l~~~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~~~v~~~~   81 (369)
T 3zwl_B           36 TQVKY-------NKEGDLLFSCSKDSSASVWYSLNGE---------------------------RLGTLDGHTGTIWSID   81 (369)
T ss_dssp             EEEEE-------CTTSCEEEEEESSSCEEEEETTTCC---------------------------EEEEECCCSSCEEEEE
T ss_pred             EEEEE-------cCCCCEEEEEeCCCEEEEEeCCCch---------------------------hhhhhhhcCCcEEEEE
Confidence            67777       7899999999999999999987532                           2234557999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC-----CcEEEEeCCCCCCccc-
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSGF-  347 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~-  347 (502)
                      |+|+ +.+|++++.||+|++||+.+++++..+. |...|.+++|+|++ .+|++++.+     +.|++||++....... 
T Consensus        82 ~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~  158 (369)
T 3zwl_B           82 VDCF-TKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHEL  158 (369)
T ss_dssp             ECTT-SSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred             EcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceee
Confidence            9998 6699999999999999999999999888 88999999999999 899999998     9999999987654321 


Q ss_pred             ----------eEeecC--CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          348 ----------KWAVAA--DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       348 ----------~~~~~~--~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                                ...+..  .+.+++|+|++. ++++++.+|.|++||+++.        ...+..+..|...|.+++|+|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~v~~~~~~~~  229 (369)
T 3zwl_B          159 TKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNN--------YEYVDSIDLHEKSISDMQFSPD  229 (369)
T ss_dssp             EEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTT--------TEEEEEEECCSSCEEEEEECTT
T ss_pred             cccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCC--------cEeEEEEecCCCceeEEEECCC
Confidence                      223333  899999999865 8999999999999999984        3778888999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC--------------cEEEEECCC
Q 010769          416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--------------KLEIWDTLS  481 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg--------------~i~vwd~~~  481 (502)
                      + .+|++++.|+.|++||+.+++.  +..+. +...+.+++|+|++++ +++++.++              .+++||+.+
T Consensus       230 ~-~~l~~~~~d~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  304 (369)
T 3zwl_B          230 L-TYFITSSRDTNSFLVDVSTLQV--LKKYE-TDCPLNTAVITPLKEF-IILGGGQEAKDVTTTSANEGKFEARFYHKIF  304 (369)
T ss_dssp             S-SEEEEEETTSEEEEEETTTCCE--EEEEE-CSSCEEEEEECSSSSE-EEEEECCC-------------CEEEEEETTT
T ss_pred             C-CEEEEecCCceEEEEECCCCce--eeeec-CCCCceeEEecCCCce-EEEeecCCCceEEEEecCCCcceeEEEecCC
Confidence            8 8999999999999999999874  33333 6678999999999995 77777777              899999999


Q ss_pred             CccccccccC
Q 010769          482 DAGISNRFSK  491 (502)
Q Consensus       482 ~~~~~~~~~~  491 (502)
                      ++.+....++
T Consensus       305 ~~~~~~~~~~  314 (369)
T 3zwl_B          305 EEEIGRVQGH  314 (369)
T ss_dssp             CCEEEEEECC
T ss_pred             Ccchhheecc
Confidence            9887766544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.5e-31  Score=254.92  Aligned_cols=249  Identities=17%  Similarity=0.253  Sum_probs=208.4

Q ss_pred             ceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          194 LCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .|++|       +|+ +++||+|+.|++|+|||+.......                      ......+.+|...|.++
T Consensus        42 ~~v~~-------sp~~~~~l~S~s~D~~i~vWd~~~~~~~~----------------------~~~~~~l~~h~~~V~~~   92 (340)
T 4aow_A           42 TQIAT-------TPQFPDMILSASRDKTIIMWKLTRDETNY----------------------GIPQRALRGHSHFVSDV   92 (340)
T ss_dssp             EEEEE-------CTTCTTEEEEEETTSCEEEEEECCSSSCS----------------------EEEEEEECCCSSCEEEE
T ss_pred             EEEEE-------eCCCCCEEEEEcCCCeEEEEECCCCCccc----------------------ceeeEEEeCCCCCEEEE
Confidence            78888       676 7899999999999999997543322                      22233566899999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEee
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAV  351 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~  351 (502)
                      +|+|+ +.+|++|+.|+.|++|+............+...+..+.+++.+ .+|++++.|+.+++||+....... ....+
T Consensus        93 ~~s~d-g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~  170 (340)
T 4aow_A           93 VISSD-GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESH  170 (340)
T ss_dssp             EECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred             EECCC-CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEeccc
Confidence            99999 5699999999999999999999888888889999999999998 889999999999999987654332 22356


Q ss_pred             cCCeEEEEeCCCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          352 AADVESLAWDPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       352 ~~~v~~v~~~p~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      ...+.+++|++++. .++++++.|+.|++||+++.         ..+..+.+|..+|++++|+|++ .+|++|+.|+.|+
T Consensus       171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~  240 (340)
T 4aow_A          171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---------KLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAM  240 (340)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEE
T ss_pred             cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---------ceeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEE
Confidence            77899999988754 36788999999999999986         7788889999999999999998 8999999999999


Q ss_pred             EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +||+++.+  .+..+.. ...|.++.|+|++.  +++++.|+.|+|||+.++..+...
T Consensus       241 iwd~~~~~--~~~~~~~-~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~~  293 (340)
T 4aow_A          241 LWDLNEGK--HLYTLDG-GDIINALCFSPNRY--WLCAATGPSIKIWDLEGKIIVDEL  293 (340)
T ss_dssp             EEETTTTE--EEEEEEC-SSCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEEE
T ss_pred             EEEeccCc--eeeeecC-CceEEeeecCCCCc--eeeccCCCEEEEEECCCCeEEEec
Confidence            99999887  3444443 36799999999986  455677999999999987766543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1e-31  Score=269.49  Aligned_cols=267  Identities=20%  Similarity=0.341  Sum_probs=206.9

Q ss_pred             CCccccccccccCC-CceEEEEEecCCcceeEEEEEecCC--------CCCCceeeeeccccCCCcceeeeecCCCCCCC
Q 010769          137 EDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESD--------GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE  207 (502)
Q Consensus       137 ~~~~~v~~~~~~p~-~~~l~~~~~~~~~~~l~v~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~  207 (502)
                      .|...|.+++|+|+ +++|++++.++   .+.||.+....        ......+..|.    ..+.++.|       +|
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg---~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~-------~~  191 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSS---DVLVFDYTKHPSKPEPSGECQPDLRLRGHQ----KEGYGLSW-------NP  191 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSS---CEEEEEGGGSCSSCCTTCCCCCSEEEECCS----SCCCCEEE-------CT
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCC---cEEEEECCCcccccCccccCCCcEEecCCC----CCeEEEEe-------CC
Confidence            47789999999998 67888888776   46677665421        11111122232    23478888       67


Q ss_pred             CCC-EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          208 KGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      ++. +|++|+.||.|+||++........                    .......+.+|...|.+++|+|.++.+|++++
T Consensus       192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~  251 (430)
T 2xyi_A          192 NLNGYLLSASDDHTICLWDINATPKEHR--------------------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA  251 (430)
T ss_dssp             TSTTEEEEECTTSCEEEEETTSCCBGGG--------------------EEECSEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCCCCc--------------------eeccceeecCCCCCEeeeEEeCCCCCEEEEEe
Confidence            777 999999999999999975321110                    01122345589999999999996688999999


Q ss_pred             cCCcEEEEECCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC-CccceEeecCCeEEEEeCC
Q 010769          287 ADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       287 ~Dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~v~~~p  362 (502)
                      .||.|++||++++   +++..+..|...|++++|+|++..+|++|+.||.|++||++... .......|...|.+++|+|
T Consensus       252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred             CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence            9999999999987   57778888999999999999996789999999999999999854 3444556889999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCC-----CCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPD-----STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      ++..++++++.||.|++||++.......     ......+..+.+|...|++++|+|+++.+|++++.||.|+||++...
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9888899999999999999987421100     00014567778899999999999998559999999999999998753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.7e-31  Score=287.98  Aligned_cols=249  Identities=19%  Similarity=0.292  Sum_probs=215.6

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.+|.|+||++.++.                           ....+.+|...|++++
T Consensus        17 ~~i~~-------sp~~~~la~~~~~g~v~iwd~~~~~---------------------------~~~~~~~~~~~v~~~~   62 (814)
T 3mkq_A           17 KGIDF-------HPTEPWVLTTLYSGRVEIWNYETQV---------------------------EVRSIQVTETPVRAGK   62 (814)
T ss_dssp             EEEEE-------CSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEeCCCEEEEEECCCCc---------------------------eEEEEecCCCcEEEEE
Confidence            68888       8999999999999999999987532                           2223457999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC-CCccceEeec
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAVA  352 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~  352 (502)
                      |+|+ +.+|++|+.||.|++||+.+++.+..+.+|...|++++|+|++ .+|++++.||.|++|++++. ........+.
T Consensus        63 ~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  140 (814)
T 3mkq_A           63 FIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHE  140 (814)
T ss_dssp             EEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred             EeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence            9999 5699999999999999999999999999999999999999999 88999999999999999886 3344455678


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-CCeeEEEEcC--CCCCEEEEEeCCCcE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNP--LVPNLLATGSTDKMV  429 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp--~~~~~l~t~s~dg~i  429 (502)
                      ..|.+++|+|.++..+++++.+|.|++||++..         .....+..+. ..+.+++|+|  ++ .+|++++.||.|
T Consensus       141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i  210 (814)
T 3mkq_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS---------TPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTI  210 (814)
T ss_dssp             SCEEEEEEETTEEEEEEEEETTSEEEEEETTCS---------SCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEE
T ss_pred             CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------cceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEE
Confidence            899999999944558999999999999999876         4555555544 8999999999  76 899999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ++||+.+++  .+..+..|.+.|.+++|+|+++ +|++++.||.|++||+.++..+.....+
T Consensus       211 ~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          211 KIWDYQTKS--CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             EEEETTTTE--EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             EEEECCCCc--EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            999999887  5667778999999999999999 5999999999999999998877655433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.7e-31  Score=261.12  Aligned_cols=253  Identities=17%  Similarity=0.194  Sum_probs=199.8

Q ss_pred             ceeeeecCCCCCCCCC-CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          194 LCMAWLDCPLKDREKG-NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~-~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .|++|       +|++ ++||+|+.||.|+||++......                         ......+|...|.++
T Consensus        77 ~~~~~-------~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~~~~~h~~~v~~~  124 (383)
T 3ei3_B           77 TSLEW-------HPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------SFIQGMGPGDAITGM  124 (383)
T ss_dssp             EEEEE-------CSSCTTEEEEEEBTSCEEEEETTSTTCE-------------------------EEECCCSTTCBEEEE
T ss_pred             EEEEE-------CCCCCCEEEEEcCCCeEEEEeCCCcccc-------------------------eeeecCCcCCceeEE
Confidence            67777       7888 99999999999999999753221                         112234799999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc---CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  349 (502)
                      +|+|+++.+|++|+.|+.|++||+.. ..+..+..   |...|.+++|+|++ .+|++|+.|+.|++||++ ........
T Consensus       125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~  201 (383)
T 3ei3_B          125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKEK  201 (383)
T ss_dssp             EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEEE
T ss_pred             EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEec
Confidence            99995467999999999999999986 44555543   44889999999999 899999999999999995 44444456


Q ss_pred             eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC-CCCCEEEEEeCCCc
Q 010769          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP-LVPNLLATGSTDKM  428 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l~t~s~dg~  428 (502)
                      .|...|.+++|+|++..++++++.|+.|++||+++....     ...+..+ .|...|.+++|+| ++ .+|++++.|+.
T Consensus       202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~  274 (383)
T 3ei3_B          202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-----NSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNE  274 (383)
T ss_dssp             CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-----TCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSE
T ss_pred             cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-----cceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCc
Confidence            788999999999988778999999999999999974210     1334444 7999999999999 87 89999999999


Q ss_pred             EEEEECCCCCeeEEEEec-----CC----------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          429 VKLWDLSNNQPSCIASRN-----PK----------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~-----~~----------~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      |++||+++.+........     .|          .+.+..++|+|++.+   +|+.||.|+|||+.+++.+..+..+
T Consensus       275 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l~~~  349 (383)
T 3ei3_B          275 IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVHQLRDP  349 (383)
T ss_dssp             EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred             EEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCceeeeecCC
Confidence            999999987643222211     11          134556777777763   7789999999999999988776543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-32  Score=274.28  Aligned_cols=255  Identities=14%  Similarity=0.147  Sum_probs=199.6

Q ss_pred             cceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee
Q 010769          193 PLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      ..|++|       +| ++++||+|+.||.|+||++......                     ........ .+|...|++
T Consensus        66 V~~~~~-------s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------~~~~~~~~-~~h~~~v~~  116 (437)
T 3gre_A           66 ITSSAV-------SPGETPYLITGSDQGVIKIWNLKEIIVG---------------------EVYSSSLT-YDCSSTVTQ  116 (437)
T ss_dssp             EEEEEE-------ECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------CCCSCSEE-EECSSCEEE
T ss_pred             eEEEEE-------CCCCCCEEEEecCCceEEEeECcccccC---------------------cccceeee-ccCCCCEEE
Confidence            378887       68 8999999999999999998641100                     00111111 158999999


Q ss_pred             EEecCCCCcEEEEEecCCcEEEEECC---CCeeeEEecc------------CCCCeEEEE--EcCCCCcEEEEEECCCcE
Q 010769          272 LAWNKEFRNILASASADKQVKIWDVA---AGKCNLTLEH------------HTDKVQAVA--WNHHSPQILLSGSFDRSV  334 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~Dg~v~vwd~~---~~~~~~~~~~------------h~~~v~~l~--~~~~~~~~l~s~~~dg~i  334 (502)
                      ++|+|+ +.+|++|+.||+|++||+.   +++.+..+..            +...+.++.  +++++ .+|++|+.||.|
T Consensus       117 ~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i  194 (437)
T 3gre_A          117 ITMIPN-FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRV  194 (437)
T ss_dssp             EEECTT-SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEE
T ss_pred             EEEeCC-CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeE
Confidence            999998 6699999999999999994   5544443332            455666666  55677 899999999999


Q ss_pred             EEEeCCCCCCccceEe--ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-cCCCCeeEEE
Q 010769          335 VMKDARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTIS  411 (502)
Q Consensus       335 ~vwd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~  411 (502)
                      ++||+++.+.......  |...|.+++|+|++. ++++|+.||.|++||+++.         .++..+. .|..+|++++
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~  264 (437)
T 3gre_A          195 IIFDIRTLERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFN---------VLIRSWSFGDHAPITHVE  264 (437)
T ss_dssp             EEEETTTCCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTT---------EEEEEEBCTTCEEEEEEE
T ss_pred             EEEeCCCCeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCc---------cEEEEEecCCCCceEEEE
Confidence            9999999887665555  788999999999865 8999999999999999986         6667665 7888999997


Q ss_pred             EcC----CCCCEEEEEeCCCcEEEEECCCCCeeEEEEe----------------------cC--CCCCEEEEEEcCCCCc
Q 010769          412 YNP----LVPNLLATGSTDKMVKLWDLSNNQPSCIASR----------------------NP--KAGAVFSVAFSEDSPF  463 (502)
Q Consensus       412 ~sp----~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~----------------------~~--~~~~v~~~~~spd~~~  463 (502)
                      |+|    ++ .+|++|+.||.|++||+++++.......                      .+  |...|++++|+ ++. 
T Consensus       265 ~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-  341 (437)
T 3gre_A          265 VCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-  341 (437)
T ss_dssp             ECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-
T ss_pred             eccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-
Confidence            765    34 6999999999999999998874322221                      11  56678899999 666 


Q ss_pred             EEEEEeCCCcEEEEECCCCccccccccC
Q 010769          464 VLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       464 llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +|++|+.||.|++||+.+++.+..+.++
T Consensus       342 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          342 ILLTDEATSSIVMFSLNELSSSKAVISP  369 (437)
T ss_dssp             EEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred             EEEecCCCCeEEEEECCCcccceEEecc
Confidence            5999999999999999999988766654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.3e-31  Score=256.86  Aligned_cols=249  Identities=12%  Similarity=0.139  Sum_probs=204.9

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..|++|       +|++++|++|+.||.|+||++......                        .......+|...|+++
T Consensus        14 v~~~~~-------s~~~~~l~~~~~d~~v~iw~~~~~~~~------------------------~~~~~~~~~~~~v~~~   62 (342)
T 1yfq_A           14 ISDIKI-------IPSKSLLLITSWDGSLTVYKFDIQAKN------------------------VDLLQSLRYKHPLLCC   62 (342)
T ss_dssp             EEEEEE-------EGGGTEEEEEETTSEEEEEEEETTTTE------------------------EEEEEEEECSSCEEEE
T ss_pred             EEEEEE-------cCCCCEEEEEcCCCeEEEEEeCCCCcc------------------------ccceeeeecCCceEEE
Confidence            368887       688999999999999999998753211                        0112233799999999


Q ss_pred             EecCCCCc-EEEEEecCCcEEEEEC-CCCeeeEEecc--CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-------
Q 010769          273 AWNKEFRN-ILASASADKQVKIWDV-AAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-------  341 (502)
Q Consensus       273 ~~~~~~~~-~l~sgs~Dg~v~vwd~-~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-------  341 (502)
                      +|+|+ +. +|++|+.||.|++||+ .+++. ..+.+  |...|.+++|+| + .+|++++.|+.|++||+++       
T Consensus        63 ~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~  138 (342)
T 1yfq_A           63 NFIDN-TDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             EEEES-SSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             EECCC-CCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEccccccccccc
Confidence            99999 77 8999999999999999 77755 67788  999999999999 6 8999999999999999987       


Q ss_pred             --CCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCC-CCCCCCCCCCCccEEEecCCCCeeEEEEcC-CCC
Q 010769          342 --STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT-AKSDPDSTSQQSSFTLHAHDKAVCTISYNP-LVP  417 (502)
Q Consensus       342 --~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~  417 (502)
                        .+... ...+...+.+++|+|++   +++++.+|.|++||+++ ...       ........|...|.+++|+| ++ 
T Consensus       139 ~~~~~~~-~~~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~-  206 (342)
T 1yfq_A          139 VKNLNSN-NTKVKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD-------NGTIEESGLKYQIRDVALLPKEQ-  206 (342)
T ss_dssp             EEESCSS-SSSSCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC-------CCEEEECSCSSCEEEEEECSGGG-
T ss_pred             ccCCeee-EEeeCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc-------cceeeecCCCCceeEEEECCCCC-
Confidence              55444 23378899999999854   99999999999999997 521       23345567889999999999 87 


Q ss_pred             CEEEEEeCCCcEEEEECCCC------CeeEEEEecCCC---------CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          418 NLLATGSTDKMVKLWDLSNN------QPSCIASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~------~~~~~~~~~~~~---------~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      .+|++++.||.|++|++...      +  ....+..|.         +.|.+++|+|++++ |++|+.||.|++||+.++
T Consensus       207 ~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          207 EGYACSSIDGRVAVEFFDDQGDDYNSS--KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCT--TCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETTTT
T ss_pred             CEEEEEecCCcEEEEEEcCCCcccccc--cceeeecccccccccccceeEEEEEEcCCCCE-EEEecCCceEEEEcCccH
Confidence            89999999999999999876      4  334445554         49999999999995 889999999999999999


Q ss_pred             ccccccccC
Q 010769          483 AGISNRFSK  491 (502)
Q Consensus       483 ~~~~~~~~~  491 (502)
                      +.+.....+
T Consensus       284 ~~~~~~~~~  292 (342)
T 1yfq_A          284 KKIKNFAKF  292 (342)
T ss_dssp             EEEEECCCC
T ss_pred             hHhhhhhcc
Confidence            887765544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.1e-31  Score=301.80  Aligned_cols=302  Identities=21%  Similarity=0.273  Sum_probs=240.3

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCC-------------------------ce--eeee---
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP-------------------------NL--YVHH---  185 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~-------------------------~l--~~~~---  185 (502)
                      ..|...|.++.|+|++++|++++.++   .+.+|..........                         .+  ...+   
T Consensus       879 ~~h~~~v~~v~~spdg~~l~s~s~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  955 (1249)
T 3sfz_A          879 RGHLSWVHGVMFSPDGSSFLTASDDQ---TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ  955 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred             CCCccceEEEEECCCCCEEEEEeCCC---eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcce
Confidence            35788999999999999999999887   567776442111000                         00  0000   


Q ss_pred             -ccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCC
Q 010769          186 -HIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS  264 (502)
Q Consensus       186 -~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (502)
                       .........|+.|       +|+++++++|+.+|.|++|++....                           ....+.+
T Consensus       956 ~~~~~~~~i~~~~~-------sp~g~~l~~g~~~g~i~i~d~~~~~---------------------------~~~~~~~ 1001 (1249)
T 3sfz_A          956 IDYLPEAQVSCCCL-------SPHLEYVAFGDEDGAIKIIELPNNR---------------------------VFSSGVG 1001 (1249)
T ss_dssp             EEEECCSCEEEEEE-------CTTSSEEEEEETTSCCEEEETTTTS---------------------------CEEECCC
T ss_pred             EEEcccCcEEEEEE-------cCCCCEEEEEcCCCCEEEEEcCCCc---------------------------eeeeccc
Confidence             0001122344444       8999999999999999999997532                           2223457


Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      |...|++++|+|+ +.+|++++.||+|++||+.+++... +..|...|.++.|+|++  .+++++.||.|++||+.+++.
T Consensus      1002 h~~~v~~l~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A         1002 HKKAVRHIQFTAD-GKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp             CSSCCCCEEECSS-SSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCC
T ss_pred             CCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCce
Confidence            9999999999999 5699999999999999999998764 45799999999999965  688999999999999999988


Q ss_pred             ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe
Q 010769          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ......|...|.+++|+|++. ++++++.||.|++||+.+.         .++..+.+|...|++++|+|++ .+|++|+
T Consensus      1078 ~~~~~~~~~~v~~~~~s~d~~-~l~s~s~d~~v~iwd~~~~---------~~~~~l~~h~~~v~~~~~s~dg-~~lat~~ 1146 (1249)
T 3sfz_A         1078 ERDFTCHQGTVLSCAISSDAT-KFSSTSADKTAKIWSFDLL---------SPLHELKGHNGCVRCSAFSLDG-ILLATGD 1146 (1249)
T ss_dssp             CEEEECCSSCCCCEEECSSSS-SCEEECCSSCCCEECSSSS---------SCSBCCCCCSSCEEEEEECSSS-SEEEEEE
T ss_pred             eEEEcccCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCc---------ceeeeeccCCCcEEEEEECCCC-CEEEEEe
Confidence            877778899999999999876 7999999999999999886         6677788999999999999998 9999999


Q ss_pred             CCCcEEEEECCCCCeeEE-------EEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          425 TDKMVKLWDLSNNQPSCI-------ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~~~~-------~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      .||.|++||+.+++....       .....|.+.|++++|+|++.+ |++++  |.|++||+.+++.+.....+.
T Consensus      1147 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~-l~s~~--g~v~vwd~~~g~~~~~~~~~~ 1218 (1249)
T 3sfz_A         1147 DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT-LVSAG--GYLKWWNVATGDSSQTFYTNG 1218 (1249)
T ss_dssp             TTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSC-EEEES--SSEEEBCSSSCBCCCCCCCSS
T ss_pred             CCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCE-EEECC--CeEEEEECCCCceeeeeeccC
Confidence            999999999998763221       122568889999999999996 66665  899999999999887665543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.2e-31  Score=263.85  Aligned_cols=249  Identities=10%  Similarity=0.112  Sum_probs=179.1

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecC--------C
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK--------E  277 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--------~  277 (502)
                      ++++++||+|+.|++|+||++.......                      ......+.+|.+.|++|+|+|        +
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~----------------------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d  155 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIIT----------------------QHVLGGKSGHHNFVNDIDIADVYSADNRLA  155 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEE----------------------EEEECTTTSCSSCEEEEEEEEEECTTCSEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccce----------------------eeeecccCCCCCceEEEEEccccccccCCC
Confidence            5678899999999999999987533211                      122335679999999999998        4


Q ss_pred             CCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc----------
Q 010769          278 FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----------  347 (502)
Q Consensus       278 ~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----------  347 (502)
                       +++|||||.|++|+|||+.++.++..+..|...|.+++|+|++..+|++|+.||+|++||+++++....          
T Consensus       156 -~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          156 -EQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             -EEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred             -CCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence             579999999999999999999888888889999999999999867899999999999999987653221          


Q ss_pred             ---------------eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC----------CCCCccEEEec
Q 010769          348 ---------------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS----------TSQQSSFTLHA  402 (502)
Q Consensus       348 ---------------~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~~~~~~~~~~~  402 (502)
                                     ...+...+.++.|++.....+++++.|+.+++||++........          ...........
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (393)
T 4gq1_A          235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL  314 (393)
T ss_dssp             CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred             eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence                           12345668889987433458999999999999999876321100          00011122222


Q ss_pred             CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      +...+..+.+.+.+..++++|+.||+|++||+.+++.  ......|..+|++++|+|+|+ +||+++.+| +.+|.+..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~-~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGS-HLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSS-EEEEEESSE-EEEEEEGG
T ss_pred             cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCC-EEEEEeCCC-eEEEEEeC
Confidence            2333333333333435677888999999999998874  344556778999999999999 488887665 77776643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.6e-30  Score=262.08  Aligned_cols=277  Identities=24%  Similarity=0.349  Sum_probs=223.4

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.++.|+  +++|++|+.++   .+.+|.+.....  ...+..|    .....|+.|         ++++|++|+
T Consensus       157 ~h~~~v~~~~~~--~~~l~s~~~dg---~i~vwd~~~~~~--~~~~~~h----~~~v~~~~~---------~~~~l~s~s  216 (445)
T 2ovr_B          157 GHTGGVWSSQMR--DNIIISGSTDR---TLKVWNAETGEC--IHTLYGH----TSTVRCMHL---------HEKRVVSGS  216 (445)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTS---CEEEEETTTTEE--EEEECCC----SSCEEEEEE---------ETTEEEEEE
T ss_pred             CCCCCEEEEEec--CCEEEEEeCCC---eEEEEECCcCcE--EEEECCC----CCcEEEEEe---------cCCEEEEEe
Confidence            578899999997  67999999887   456665543321  0111112    222356665         477899999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .||.|++||+....                           ....+.+|...|.+++|  + +.+|++|+.||.|++||+
T Consensus       217 ~dg~i~~wd~~~~~---------------------------~~~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~iwd~  266 (445)
T 2ovr_B          217 RDATLRVWDIETGQ---------------------------CLHVLMGHVAAVRCVQY--D-GRRVVSGAYDFMVKVWDP  266 (445)
T ss_dssp             TTSEEEEEESSSCC---------------------------EEEEEECCSSCEEEEEE--C-SSCEEEEETTSCEEEEEG
T ss_pred             CCCEEEEEECCCCc---------------------------EEEEEcCCcccEEEEEE--C-CCEEEEEcCCCEEEEEEC
Confidence            99999999997532                           22234579999999999  3 458999999999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      .+++++..+.+|...|.++.|  ++ .++++++.||.|++||+++++.......+...+.++.+++   .++++|+.||.
T Consensus       267 ~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~  340 (445)
T 2ovr_B          267 ETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADST  340 (445)
T ss_dssp             GGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---TEEEEEETTSC
T ss_pred             CCCcEeEEecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC---CEEEEEeCCCe
Confidence            999999999999999999999  44 7899999999999999999887766667788899888864   38999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEec---CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe---cCCCC
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR---NPKAG  450 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~---~~~~~  450 (502)
                      |++||++++         ..+..+..   |...|++++|++   .+|++|+.||.|++||+.+++.......   ..|.+
T Consensus       341 i~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  408 (445)
T 2ovr_B          341 VKIWDIKTG---------QCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG  408 (445)
T ss_dssp             EEEEETTTC---------CEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred             EEEEECCCC---------cEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence            999999886         66777765   889999999974   7999999999999999999884332211   46788


Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCc----EEEEECCCC
Q 010769          451 AVFSVAFSEDSPFVLAIGGSKGK----LEIWDTLSD  482 (502)
Q Consensus       451 ~v~~~~~spd~~~llasg~~dg~----i~vwd~~~~  482 (502)
                      .|++++|+|++. +|++|+.||+    |.|||+...
T Consensus       409 ~v~~~~~s~~~~-~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          409 VVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCCC
T ss_pred             eEEEEEecCCEE-EEEEcccCCCCccEEEEEECCCC
Confidence            999999999998 5999999998    999999764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.7e-30  Score=261.70  Aligned_cols=232  Identities=19%  Similarity=0.341  Sum_probs=199.0

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ++++|++|+.||.|++||+....                           ....+.+|...|++++|+|+ + +|++|+.
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~~~---------------------------~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~  181 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHDGGVWALKYAHG-G-ILVSGST  181 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCSSCEEEEEECST-T-EEEEEET
T ss_pred             CCCEEEEEcCCCcEEEEECCCCc---------------------------EEEEEeCCCcCEEEEEEcCC-C-EEEEEeC
Confidence            57899999999999999987532                           23345589999999999998 3 8999999


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEEEEEcC--CCCcEEEEEECCCcEEEEeCCCCCCcc-------------------
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSG-------------------  346 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~-------------------  346 (502)
                      ||+|++||+.+++++..+.+|...|.+++|++  ++ .+|++|+.||.|++||+++.....                   
T Consensus       182 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (464)
T 3v7d_B          182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP  260 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred             CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence            99999999999999999999999999999984  55 899999999999999998765321                   


Q ss_pred             ----ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE
Q 010769          347 ----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       347 ----~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                          ....+...+.++.  +++ .++++++.||.|++||+++.         .++..+.+|...|.+++|+|++ .+|++
T Consensus       261 ~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~s  327 (464)
T 3v7d_B          261 YFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQM---------KCLYILSGHTDRIYSTIYDHER-KRCIS  327 (464)
T ss_dssp             TEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEEETTT-TEEEE
T ss_pred             EEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCEEEEEEcCCC-CEEEE
Confidence                1224556677764  433 48999999999999999986         7788899999999999999998 89999


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      |+.||.|++||+.+++  ++..+.+|...|.+++|++  . .|++|+.||.|++||+.++.....
T Consensus       328 g~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          328 ASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             EETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EeCCCcEEEEECCCCc--EEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCceeee
Confidence            9999999999999887  6778889999999999984  4 599999999999999998775543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-31  Score=261.47  Aligned_cols=261  Identities=15%  Similarity=0.212  Sum_probs=205.0

Q ss_pred             ceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          194 LCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       194 ~~~~w~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      .|++|.+.    ++ ...++++++.++.|+||++.....+....                      ......|...|+++
T Consensus        22 ~~i~~~p~----~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~----------------------~~~~~~~~~~v~~~   75 (366)
T 3k26_A           22 FGVQFNWH----SKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ----------------------SYVDADADENFYTC   75 (366)
T ss_dssp             EEEEECTT----CCTTSCEEEEEEETTEEEEEEECGGGCEEEEE----------------------EEECSCTTCCEEEE
T ss_pred             EEEEEecc----cCCCCceEEEECCCCEEEEEEcCCCcEEEeee----------------------eccccCCCCcEEEE
Confidence            67777321    11 35566666667899999997543322111                      11122477899999


Q ss_pred             EecCCC---CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcC-CCCcEEEEEECCCcEEEEeCCCCCCccce
Q 010769          273 AWNKEF---RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       273 ~~~~~~---~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  348 (502)
                      +|+|++   +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++ .+|++++.||.|++||+++++.....
T Consensus        76 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~  154 (366)
T 3k26_A           76 AWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAIF  154 (366)
T ss_dssp             EEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEEe
Confidence            999984   24899999999999999999999999999999999999999 55 89999999999999999987765544


Q ss_pred             ---EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC-------------------CCCCCccEEEecCCCC
Q 010769          349 ---WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-------------------STSQQSSFTLHAHDKA  406 (502)
Q Consensus       349 ---~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------------~~~~~~~~~~~~h~~~  406 (502)
                         ..+...|.+++|+|++. ++++++.||.|++||+++......                   ............|...
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (366)
T 3k26_A          155 GGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY  233 (366)
T ss_dssp             CSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred             cccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence               36888999999999765 899999999999999986521000                   0000112233449999


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe------------eEEEEecCCCCCEEEEEEcCC--CCcEEEEEeCCC
Q 010769          407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP------------SCIASRNPKAGAVFSVAFSED--SPFVLAIGGSKG  472 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~------------~~~~~~~~~~~~v~~~~~spd--~~~llasg~~dg  472 (502)
                      |.+++|+  + .+|++++.|+.|++||+.+...            ..+..+..|...|++++|+|+  +. +|++|+.||
T Consensus       234 v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg  309 (366)
T 3k26_A          234 VDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVG  309 (366)
T ss_dssp             CCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTS
T ss_pred             EEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCC
Confidence            9999999  4 7999999999999999987653            457777889999999999999  88 599999999


Q ss_pred             cEEEEECCCCcccc
Q 010769          473 KLEIWDTLSDAGIS  486 (502)
Q Consensus       473 ~i~vwd~~~~~~~~  486 (502)
                      .|++||+.+++.+.
T Consensus       310 ~i~vwd~~~~~~~~  323 (366)
T 3k26_A          310 KLYVWDLEVEDPHK  323 (366)
T ss_dssp             CEEEEECCSSSGGG
T ss_pred             cEEEEECCCCCCcc
Confidence            99999999987654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.98  E-value=2.1e-30  Score=271.58  Aligned_cols=281  Identities=12%  Similarity=0.191  Sum_probs=221.4

Q ss_pred             CCCccc-cccccccC--CCceEEEEEecCCcceeEEEEEecC------CCCCCceeeeeccccCCCcceeeeecCCCCCC
Q 010769          136 DEDSED-LEDMTINP--NDAVIVCARNEDDVSHLEVYILEES------DGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR  206 (502)
Q Consensus       136 ~~~~~~-v~~~~~~p--~~~~l~~~~~~~~~~~l~v~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s  206 (502)
                      ..|... |.+++|+|  ++++|++|+.++   .+.||.+...      ..   .+ .+.-........++.|       +
T Consensus        60 ~~h~~~~v~~~~~sp~~~~~~l~s~~~dg---~v~vw~~~~~~~~~~~~~---~~-~~~~~~~~~~v~~~~~-------s  125 (615)
T 1pgu_A           60 TGHGSSVVTTVKFSPIKGSQYLCSGDESG---KVIVWGWTFDKESNSVEV---NV-KSEFQVLAGPISDISW-------D  125 (615)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEETTS---EEEEEEEEEEGGGTEEEE---EE-EEEEECCSSCEEEEEE-------C
T ss_pred             ecCCCceEEEEEECcCCCCCEEEEecCCC---EEEEEeCCCCcccccccc---cc-cchhhcccccEEEEEE-------e
Confidence            457888 99999999  999999999876   6788887533      11   11 1110111233467776       7


Q ss_pred             CCCCEEEEecCC----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          207 EKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       207 ~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      |++++|++++.+    +.|++|+..                             .....+.+|...|.+++|+|++..+|
T Consensus       126 ~~~~~l~~~~~~~~~~~~v~~~d~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l  176 (615)
T 1pgu_A          126 FEGRRLCVVGEGRDNFGVFISWDSG-----------------------------NSLGEVSGHSQRINACHLKQSRPMRS  176 (615)
T ss_dssp             TTSSEEEEEECCSSCSEEEEETTTC-----------------------------CEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred             CCCCEEEEeccCCCCccEEEEEECC-----------------------------CcceeeecCCccEEEEEECCCCCcEE
Confidence            999999999988    789999842                             12224457999999999999966689


Q ss_pred             EEEecCCcEEEEECCCCeeeEEeccCCC---CeEEEEEcCC-CCcEEEEEECCCcEEEEeCCCCCCccce-E---eecCC
Q 010769          283 ASASADKQVKIWDVAAGKCNLTLEHHTD---KVQAVAWNHH-SPQILLSGSFDRSVVMKDARISTHSGFK-W---AVAAD  354 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~---~v~~l~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~---~~~~~  354 (502)
                      ++|+.|+.|++||+.+++++..+..|..   .|.+++|+|+ + .+|++++.||.|++||+++++..... .   .+...
T Consensus       177 ~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  255 (615)
T 1pgu_A          177 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG  255 (615)
T ss_dssp             EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred             EEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCc
Confidence            9999999999999999999999999999   9999999999 7 89999999999999999988776644 3   78889


Q ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC----CCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      |.+++|+ ++ .++++++.+|.|++||+++.         ..+..+..+    ...+.++.|. ++ .++++++.++.|+
T Consensus       256 v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~  322 (615)
T 1pgu_A          256 IFALSWL-DS-QKFATVGADATIRVWDVTTS---------KCVQKWTLDKQQLGNQQVGVVAT-GN-GRIISLSLDGTLN  322 (615)
T ss_dssp             EEEEEES-SS-SEEEEEETTSEEEEEETTTT---------EEEEEEECCTTCGGGCEEEEEEE-ET-TEEEEEETTSCEE
T ss_pred             eEEEEEc-CC-CEEEEEcCCCcEEEEECCCC---------cEEEEEcCCCCcccCceeEEEeC-CC-CeEEEEECCCCEE
Confidence            9999999 54 48999999999999999976         566667666    3678888886 55 8999999999999


Q ss_pred             EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      +||+.+++  .+..+..|.+.|.+++| |+    |++++.||.|++|++.
T Consensus       323 ~~d~~~~~--~~~~~~~~~~~v~~~~~-~~----l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          323 FYELGHDE--VLKTISGHNKGITALTV-NP----LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             EEETTEEE--EEEEECCCSSCEEEEET-TT----TEEEETTSCEEETTTT
T ss_pred             EEECCCCc--EEEEEeCCCCCEEEEEe-cC----cEEECCCCeEEEEEch
Confidence            99998865  45566677777777777 65    4445555555555543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.98  E-value=7.2e-31  Score=255.77  Aligned_cols=247  Identities=17%  Similarity=0.286  Sum_probs=197.6

Q ss_pred             CcceeeeecCCCCCCCCCC-EEEEecC---CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccc
Q 010769          192 FPLCMAWLDCPLKDREKGN-FMAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD  267 (502)
Q Consensus       192 ~~~~~~w~~~~~~~s~~~~-~la~g~~---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  267 (502)
                      ...+++|       +|++. ++++|+.   ||.|+||++......                          .....+|..
T Consensus        20 ~v~~~~~-------~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~~   66 (357)
T 3i2n_A           20 TVFDCKW-------VPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--------------------------LLREIEKAK   66 (357)
T ss_dssp             CEEEEEE-------CTTSSEEEEEEC--CCCEEEEEEEECSSSEE--------------------------EEEEEEESS
T ss_pred             ceEEEEE-------cCCCceEEEecCccCCCcEEEEEeCCCCccc--------------------------ceeeecccC
Confidence            3478888       78775 5567776   899999999753211                          111226889


Q ss_pred             ceeeEEecCCC--CcEEEEEecCCcEEEEECCCCe-eeEEeccCCCCeEEEEE------cCCCCcEEEEEECCCcEEEEe
Q 010769          268 SVLGLAWNKEF--RNILASASADKQVKIWDVAAGK-CNLTLEHHTDKVQAVAW------NHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       268 ~V~~l~~~~~~--~~~l~sgs~Dg~v~vwd~~~~~-~~~~~~~h~~~v~~l~~------~~~~~~~l~s~~~dg~i~vwd  338 (502)
                      .|.+++|+|+.  +.+|++|+.||.|++||+.+++ ++..+.+|...|.++.|      +|++ .+|++++.||.|++||
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEEC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEe
Confidence            99999999984  4799999999999999999988 88899999999999965      5677 8999999999999999


Q ss_pred             CCCCCC-ccceEeec----CCeEEEE----eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeE
Q 010769          339 ARISTH-SGFKWAVA----ADVESLA----WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  409 (502)
Q Consensus       339 ~~~~~~-~~~~~~~~----~~v~~v~----~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~  409 (502)
                      +++... ......+.    ..+.+++    |+|++. ++++++.+|.|++||+++.         .. .....|...|.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~-~~~~~~~~~v~~  214 (357)
T 3i2n_A          146 PRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNM---------AL-RWETNIKNGVCS  214 (357)
T ss_dssp             TTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTT---------EE-EEEEECSSCEEE
T ss_pred             CCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccC---------ce-eeecCCCCceEE
Confidence            998763 33222333    3788888    677655 8999999999999999976         33 445678999999


Q ss_pred             EEEcC---CCCCEEEEEeCCCcEEEEECCCCCeeE---EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          410 ISYNP---LVPNLLATGSTDKMVKLWDLSNNQPSC---IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       410 l~~sp---~~~~~l~t~s~dg~i~vwd~~~~~~~~---~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ++|+|   ++ .+|++++.||.|++||+++.++..   ......|...|++++|+|+++.+|++|+.||.|++||+.++.
T Consensus       215 ~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          215 LEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             EEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            99999   76 899999999999999998765322   223458899999999999998669999999999999998765


Q ss_pred             c
Q 010769          484 G  484 (502)
Q Consensus       484 ~  484 (502)
                      .
T Consensus       294 ~  294 (357)
T 3i2n_A          294 Q  294 (357)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.1e-31  Score=284.36  Aligned_cols=251  Identities=23%  Similarity=0.339  Sum_probs=208.1

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|+.|       +|++++|++|+.||.|+||++....                         ......+.+|...|++++
T Consensus        13 ~~l~~-------s~dg~~latg~~dg~I~vwd~~~~~-------------------------~~~~~~l~~h~~~V~~l~   60 (753)
T 3jro_A           13 HDAVL-------DYYGKRLATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHEGPVWRVD   60 (753)
T ss_dssp             EEECC-------CSSSCCEEEEETTTEEEEEEEETTE-------------------------EEEEEEECCCSSCEEEEE
T ss_pred             EEEEE-------CCCCCeEEEEECCCcEEEEecCCCC-------------------------CccceeccCCcCceEEEE
Confidence            57766       7899999999999999999986311                         223345568999999999


Q ss_pred             ecCCC-CcEEEEEecCCcEEEEECCCCe--eeEEeccCCCCeEEEEEcCC--CCcEEEEEECCCcEEEEeCCCCCCc--c
Q 010769          274 WNKEF-RNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHS--G  346 (502)
Q Consensus       274 ~~~~~-~~~l~sgs~Dg~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~--~  346 (502)
                      |+|+. +++|++|+.||+|++||+.+++  .+..+.+|...|++++|+|+  + .+|++|+.||.|++||++.....  .
T Consensus        61 ~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~  139 (753)
T 3jro_A           61 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPI  139 (753)
T ss_dssp             ECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred             ecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCccee
Confidence            98762 4699999999999999999987  77888899999999999999  6 89999999999999999987433  3


Q ss_pred             ceEeecCCeEEEEeCCC------------CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769          347 FKWAVAADVESLAWDPH------------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      ....+...|.+++|+|.            ++.++++|+.||.|++||+++....     ..+...+.+|..+|++++|+|
T Consensus       140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~~~~~h~~~V~~l~~sp  214 (753)
T 3jro_A          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSP  214 (753)
T ss_dssp             EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECC
T ss_pred             EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-----ceeeeeecCCCCcEEEEEecc
Confidence            34467889999999995            2458999999999999999876210     144567788999999999999


Q ss_pred             CC--CCEEEEEeCCCcEEEEECCCCCee---EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          415 LV--PNLLATGSTDKMVKLWDLSNNQPS---CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       415 ~~--~~~l~t~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ++  +.+|++|+.||.|++||+.++...   .......|.+.|++++|+|++++ |++|+.||.|++|++.++.
T Consensus       215 ~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC-EEEECSSSCEECCBCCSSS
T ss_pred             CCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCE-EEEEcCCCEEEEEecCCCC
Confidence            93  399999999999999999886421   23334557889999999999995 8999999999999998644

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.98  E-value=5.5e-30  Score=254.53  Aligned_cols=234  Identities=23%  Similarity=0.392  Sum_probs=196.8

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      +..+++++.++.|+||++.++....                          .....|...|++++|+|+ +.+|++|+.|
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~~~~--------------------------~~~~~~~~~v~~v~~s~~-~~~l~~~~~d  155 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGSVSA--------------------------LAETDESTYVASVKWSHD-GSFLSVGLGN  155 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEEE--------------------------EEECCTTCCEEEEEECTT-SSEEEEEETT
T ss_pred             CCCEEEEECCCeEEEeeCCCCcEeE--------------------------eeecCCCCCEEEEEECCC-CCEEEEECCC
Confidence            4567888899999999997643221                          111248899999999998 6699999999


Q ss_pred             CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC-CccceEeecCCeEEEEeCCCCCCE
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~  367 (502)
                      |.|++||+.+++.+..+.+|...|.+++|++   .+|++|+.||.|++||++... .......|...|.+++|+|++. +
T Consensus       156 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  231 (401)
T 4aez_A          156 GLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-Q  231 (401)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-E
T ss_pred             CeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-E
Confidence            9999999999999999999999999999953   689999999999999999544 3444557889999999999765 8


Q ss_pred             EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe--CCCcEEEEECCCCCeeEEEEe
Q 010769          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s--~dg~i~vwd~~~~~~~~~~~~  445 (502)
                      |++|+.||.|++||+++.         .++..+..|...|.+++|+|++..++++++  .|+.|++||+.++++  +..+
T Consensus       232 l~s~~~d~~v~iwd~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--~~~~  300 (401)
T 4aez_A          232 LASGGNDNVVQIWDARSS---------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--VNTV  300 (401)
T ss_dssp             EEEEETTSCEEEEETTCS---------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--EEEE
T ss_pred             EEEEeCCCeEEEccCCCC---------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--EEEE
Confidence            999999999999999986         778888899999999999998878888876  799999999999874  3344


Q ss_pred             cCCCCCEEEEEEcCCCCcEEEE--EeCCCcEEEEECCCCcccc
Q 010769          446 NPKAGAVFSVAFSEDSPFVLAI--GGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~llas--g~~dg~i~vwd~~~~~~~~  486 (502)
                      . +...|.+++|+|++++ |++  |+.+|.|++|++.++....
T Consensus       301 ~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~~~~~~~~~~  341 (401)
T 4aez_A          301 D-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIWSYSSSGLTK  341 (401)
T ss_dssp             E-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEEEEETTEEEE
T ss_pred             e-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEEecCCcccee
Confidence            3 4578999999999996 555  3489999999998865543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-29  Score=256.39  Aligned_cols=241  Identities=11%  Similarity=0.065  Sum_probs=189.5

Q ss_pred             cceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCC--CCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccce
Q 010769          193 PLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLD--VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  269 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  269 (502)
                      +.|++|       +|++++| |+|+.||.|+||++.  .+.....+                         ....|...|
T Consensus       105 v~~~~~-------s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-------------------------~~~~~~~~v  152 (450)
T 2vdu_B          105 IRNLRL-------TSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-------------------------KRFCFSKRP  152 (450)
T ss_dssp             EEEEEE-------CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-------------------------EEEECSSCE
T ss_pred             eEEEEE-------cCCCCEEEEEECCCCeEEEEECcCCCCceeeee-------------------------ecccCCCCc
Confidence            456666       8999996 899999999999997  43222110                         112467899


Q ss_pred             eeEEecCCCCcEEEEEecCCcEEEEECCCCeeeE----EeccCCCCeEEEEEcCC---CCcEEEEEECCCcEEEEeCCCC
Q 010769          270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNL----TLEHHTDKVQAVAWNHH---SPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~----~~~~h~~~v~~l~~~~~---~~~~l~s~~~dg~i~vwd~~~~  342 (502)
                      ++++|+|+ +.+|++|+.+|.|++|++.+++...    .+.+|...|++++|+|+   + .+|++|+.|+.|++||++++
T Consensus       153 ~~~~~sp~-~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          153 NAISIAED-DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             EEEEECTT-SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCT
T ss_pred             eEEEEcCC-CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCC
Confidence            99999999 5699999999999999998877554    77889999999999999   7 89999999999999999988


Q ss_pred             CCccc-eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe--------------------
Q 010769          343 THSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--------------------  401 (502)
Q Consensus       343 ~~~~~-~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--------------------  401 (502)
                      ..... ...|...|.+++|+ ++. +|++++.|+.|++||++++         ..+..+.                    
T Consensus       231 ~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (450)
T 2vdu_B          231 FIVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTG---------KNLSTFDYNSLIKPYLNDQHLAPPRFQ  299 (450)
T ss_dssp             TCEEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTC---------CEEEEEECHHHHGGGCCTTSBC-----
T ss_pred             ceeeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCC---------cEeeeecchhhhhhhhhhccccccccc
Confidence            76654 33688999999999 654 8999999999999999987         4444443                    


Q ss_pred             -----cCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEEC--CCC-CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC--
Q 010769          402 -----AHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDL--SNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--  470 (502)
Q Consensus       402 -----~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~--~~~-~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~--  470 (502)
                           .+...|.+++|+|++ .+|++++ .++.|++|++  ... ....+..+..+ +.|.+++|+|++. ++++++.  
T Consensus       300 ~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~-~v~~~~~~~  376 (450)
T 2vdu_B          300 NENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEF-QVTLDNKES  376 (450)
T ss_dssp             -----CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEE-EEEECCTTC
T ss_pred             ccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcE-EEEEecccC
Confidence                 234679999999988 7888888 8999999999  443 33456666667 8899999999642 3443332  


Q ss_pred             ----CCcEEEEECCC
Q 010769          471 ----KGKLEIWDTLS  481 (502)
Q Consensus       471 ----dg~i~vwd~~~  481 (502)
                          +..|.+|.+..
T Consensus       377 ~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          377 SGVQKNFAKFIEYNL  391 (450)
T ss_dssp             CSSCCCSEEEEEEET
T ss_pred             CCCCCcceEEEEEEc
Confidence                45588888754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=3.9e-30  Score=248.95  Aligned_cols=271  Identities=15%  Similarity=0.276  Sum_probs=205.1

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceee-eeccccCCCcceeeeecCCCCCCC--CCCEE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYV-HHHIIIPAFPLCMAWLDCPLKDRE--KGNFM  212 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~w~~~~~~~s~--~~~~l  212 (502)
                      ..|.+.|.+++|+|++++|++|+.++   .++||.+.....   .... +.-........|++|       +|  ++++|
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~---~~~~~~~~~~~~~~v~~~~~-------~~~~d~~~l   74 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQ---HIKVFKLDKDTS---NWELSDSWRAHDSSIVAIDW-------ASPEYGRII   74 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTS---EEEEEEECSSSC---CEEEEEEEECCSSCEEEEEE-------CCGGGCSEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCC---eEEEEECCCCCC---cceecceeccCCCcEEEEEE-------cCCCCCCEE
Confidence            45889999999999999999999887   667777765432   1111 110112233478888       56  59999


Q ss_pred             EEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEEEEecCCcE
Q 010769          213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQV  291 (502)
Q Consensus       213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~Dg~v  291 (502)
                      ++|+.||.|+|||+........                  .........+.+|...|.+++|+|+. +.+|++|+.||.|
T Consensus        75 ~s~~~dg~v~vwd~~~~~~~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v  136 (351)
T 3f3f_A           75 ASASYDKTVKLWEEDPDQEECS------------------GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL  136 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCTTS------------------SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred             EEEcCCCeEEEEecCCCccccc------------------ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence            9999999999999976432110                  01123344556899999999999983 3589999999999


Q ss_pred             EEEECCCCeeeEEec-------------cCCCCeEEEEEcCC--CCcEEEEEECCCcEEEEeCCCCCC--ccceEeecCC
Q 010769          292 KIWDVAAGKCNLTLE-------------HHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTH--SGFKWAVAAD  354 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~-------------~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~  354 (502)
                      ++||+.+++.+..+.             .|...+.+++|+|.  .+.+|++++.++.+.+|+......  ......|...
T Consensus       137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  216 (351)
T 3f3f_A          137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL  216 (351)
T ss_dssp             EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC
T ss_pred             EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc
Confidence            999998876544432             57889999999997  238999999999998888776654  2223357889


Q ss_pred             eEEEEeCCCCC---CEEEEEeCCCeEEEEECCCCCCCCC-------------------------------------CCCC
Q 010769          355 VESLAWDPHAE---HSFVVSLEDGTIKGFDIRTAKSDPD-------------------------------------STSQ  394 (502)
Q Consensus       355 v~~v~~~p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~-------------------------------------~~~~  394 (502)
                      |.+++|+|++.   .+|++++.||.|++||++.......                                     ....
T Consensus       217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (351)
T 3f3f_A          217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV  296 (351)
T ss_dssp             EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEE
T ss_pred             eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccc
Confidence            99999999873   5899999999999999987421000                                     0001


Q ss_pred             CccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       395 ~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ..+..+.+|...|++++|+|++ .+|++|+.||.|++|++.+++
T Consensus       297 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          297 ELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             EEEEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTS
T ss_pred             cEEEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCc
Confidence            4556677899999999999998 899999999999999999865

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.6e-30  Score=243.37  Aligned_cols=240  Identities=15%  Similarity=0.157  Sum_probs=200.8

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|+.|        +++++|++|+.||.|+||++....                           ....+..|...|.+++
T Consensus        22 ~~~~~--------~~~~~l~s~~~dg~v~vw~~~~~~---------------------------~~~~~~~~~~~v~~~~   66 (313)
T 3odt_A           22 RDVVA--------VDDSKVASVSRDGTVRLWSKDDQW---------------------------LGTVVYTGQGFLNSVC   66 (313)
T ss_dssp             EEEEE--------EETTEEEEEETTSEEEEEEESSSE---------------------------EEEEEEECSSCEEEEE
T ss_pred             EEEEe--------cCCCEEEEEEcCCcEEEEECCCCE---------------------------EEEEeecCCccEEEEE
Confidence            56666        468999999999999999986421                           2223446889999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  350 (502)
                      |+|+ +.+|++|+.||.|++|++...   +.+..+..|...|.++.|+  + .+|++++.||.|++||  ..........
T Consensus        67 ~~~~-~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~  140 (313)
T 3odt_A           67 YDSE-KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQA  140 (313)
T ss_dssp             EETT-TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred             ECCC-CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEeccc
Confidence            9999 669999999999999998754   6677888999999999993  4 7899999999999999  3444444556


Q ss_pred             ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      +...+.+++|.|.....+++++.+|.|++||..           .....+.. |...|.+++|+|++ . +++++.||.|
T Consensus       141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-----------~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i  207 (313)
T 3odt_A          141 HNASVWDAKVVSFSENKFLTASADKTIKLWQND-----------KVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLI  207 (313)
T ss_dssp             CSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-----------EEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEE
T ss_pred             CCCceeEEEEccCCCCEEEEEECCCCEEEEecC-----------ceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeE
Confidence            888999999998555689999999999999943           55666666 89999999999987 4 9999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ++||+++++  .+..+..|.+.|++++|+|++.  |++++.||.|++||+.+++.+.....+
T Consensus       208 ~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~  265 (313)
T 3odt_A          208 KLVDMHTGD--VLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVITLP  265 (313)
T ss_dssp             EEEETTTCC--EEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred             EEEECCchh--hhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCCceeEEEecc
Confidence            999999887  5667778999999999999994  788999999999999999877665444

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=7.8e-30  Score=249.11  Aligned_cols=284  Identities=12%  Similarity=0.151  Sum_probs=204.9

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEE-EE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AV  214 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~l-a~  214 (502)
                      ..|...|.+++|+|++++|++|+.++    ++||..+...    .++..+.   .. ..++.+       .++++++ ++
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~----~~iw~~~~~~----~~~~~~~---~~-~~~~~~-------~~~~~~~~~~   76 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS----FEIYNVHPVA----HIMSQEM---RH-LSKVRM-------LHRTNYVAFV   76 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE----EEEEEETTEE----EEEEEEC---SC-CCEEEE-------CTTSSEEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE----EEEEecCCcc----eeeeeec---CC-eEEEEE-------cCCCCEEEEE
Confidence            45888999999999999999987553    5677765332    1221111   11 233444       4556666 56


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      |+.++.|+|||+.++..+.                           .+ .|...|.+++|+++   .++++ .++.|++|
T Consensus        77 ~~~d~~v~iWd~~~~~~~~---------------------------~~-~~~~~v~~v~~~~~---~~~~~-~~~~i~i~  124 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVS---------------------------RI-KVDAPVKDLFLSRE---FIVVS-YGDVISVF  124 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEE---------------------------EE-ECSSCEEEEEECSS---EEEEE-ETTEEEEE
T ss_pred             ECCccEEEEEECCCCcEEE---------------------------EE-ECCCceEEEEEcCC---EEEEE-EcCEEEEE
Confidence            8888999999987533221                           11 25678999999987   34444 47899999


Q ss_pred             ECCCC-eeeEEeccCCCCeEEEEEcCCCCcEEEE-EECCCcEEEEeCCCCC----------------CccceEeecCCeE
Q 010769          295 DVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLS-GSFDRSVVMKDARIST----------------HSGFKWAVAADVE  356 (502)
Q Consensus       295 d~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s-~~~dg~i~vwd~~~~~----------------~~~~~~~~~~~v~  356 (502)
                      |+.++ +.+..+..   +...+++++ . .++++ |+.+|.|++||+++..                .......|...|.
T Consensus       125 d~~~~~~~~~~~~~---~~~~~~~s~-~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~  199 (355)
T 3vu4_A          125 KFGNPWKRITDDIR---FGGVCEFSN-G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK  199 (355)
T ss_dssp             ESSTTCCBSSCCEE---EEEEEEEET-T-EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEE
T ss_pred             ECCCCceeeEEecc---CCceEEEEc-c-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE
Confidence            99988 77766654   455566666 2 33333 6899999999999755                1344567889999


Q ss_pred             EEEeCCCCCCEEEEEeCCCe-EEEEECCCCCCCCCCCCCCccEEEe-c-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          357 SLAWDPHAEHSFVVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLH-A-HDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      +++|+|++. +|++|+.||+ |++||++++         ..+..+. + |...|++++|+|++ .+|++++.|++|++||
T Consensus       200 ~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~---------~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          200 MVRLNRKSD-MVATCSQDGTIIRVFKTEDG---------VLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             EEEECTTSS-EEEEEETTCSEEEEEETTTC---------CEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEE
T ss_pred             EEEECCCCC-EEEEEeCCCCEEEEEECCCC---------cEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEE
Confidence            999999865 8999999998 999999987         6777787 5 99999999999998 9999999999999999


Q ss_pred             CCCCCeeEEEE--------------------e-cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          434 LSNNQPSCIAS--------------------R-NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       434 ~~~~~~~~~~~--------------------~-~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +..........                    + .........++|++++. .|++++.||.+++|++..+....+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-~l~~~~~dg~~~~~~~~~~~~~~~  342 (355)
T 3vu4_A          269 IFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS-LVVVWPHTRMIETFKVVFDDEMER  342 (355)
T ss_dssp             SSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE-EEEEETTTTEEEEEEEEEETTTTE
T ss_pred             ccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC-EEEEEeCCCeEEEEEEEcCCCCce
Confidence            97653211111                    1 11122346789999998 488899999999999987665443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=8.6e-29  Score=247.47  Aligned_cols=253  Identities=23%  Similarity=0.428  Sum_probs=207.5

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..+++|       |+ +++||+|. |++|+|||+.++....                         ...+.+|...|++|
T Consensus       108 ~~~l~w-------S~-~n~lAvgl-d~tV~lWd~~tg~~~~-------------------------~~~~~~~~~~V~sv  153 (420)
T 4gga_A          108 LNLVDW-------SS-GNVLAVAL-DNSVYLWSASSGDILQ-------------------------LLQMEQPGEYISSV  153 (420)
T ss_dssp             CBCEEE-------CT-TSEEEEEE-TTEEEEEETTTCCEEE-------------------------EEECCSTTCCEEEE
T ss_pred             ceeEEE-------CC-CCEEEEEe-CCEEEEEECCCCCEEE-------------------------EEEecCCCCcEEEE
Confidence            346777       54 46888886 8999999998654322                         12344788999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc-cceEee
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAV  351 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~  351 (502)
                      +|+|+ +.+||+|+.||+|+|||+.+++++..+.+|...+.++.|++   .+|++|+.|+.+++||.+..... .....|
T Consensus       154 ~fspd-g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h  229 (420)
T 4gga_A          154 AWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGH  229 (420)
T ss_dssp             EECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             EECCC-CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEeccc
Confidence            99999 56999999999999999999999999999999999999864   68999999999999999876554 334567


Q ss_pred             cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE--eCCCcE
Q 010769          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG--STDKMV  429 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~--s~dg~i  429 (502)
                      ...+..+.|+|.+. ++++++.||.|++|+.......     ...+.....|...|.+++|+|.++.+++++  +.|++|
T Consensus       230 ~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I  303 (420)
T 4gga_A          230 SQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGG-----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI  303 (420)
T ss_dssp             SSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSC-----SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred             ccceeeeeecCCCC-eeeeeeccccceEEeecccccc-----ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence            88999999999876 8999999999999999876321     245677888999999999999887888765  479999


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCccccccccCC
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~-~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      ++||+.+++  +...+..+ ..+.++.|+|++..++++++ .|+.|+|||+.+++++..+.+|.
T Consensus       304 ~iwd~~t~~--~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~  364 (420)
T 4gga_A          304 RIWNVCSGA--CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT  364 (420)
T ss_dssp             EEEETTTTE--EEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred             EEEeCCccc--cceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC
Confidence            999999987  34444444 57999999999997554433 68999999999999988776654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=3.7e-29  Score=251.30  Aligned_cols=224  Identities=27%  Similarity=0.484  Sum_probs=195.8

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      .++++|++|+.||.|+|||+.+..                           ....+.+|...|++++|  + +.+|++|+
T Consensus       141 ~d~~~l~~g~~dg~i~iwd~~~~~---------------------------~~~~~~~h~~~v~~l~~--~-~~~l~sg~  190 (435)
T 1p22_A          141 YDDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHTGSVLCLQY--D-ERVIITGS  190 (435)
T ss_dssp             CCSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCSSCEEEEEC--C-SSEEEEEE
T ss_pred             ECCCEEEEEeCCCeEEEEeCCCCe---------------------------EEEEEcCCCCcEEEEEE--C-CCEEEEEc
Confidence            379999999999999999987532                           22345589999999999  3 45999999


Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc---cceEeecCCeEEEEeCCC
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKWAVAADVESLAWDPH  363 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~v~~~p~  363 (502)
                      .||+|++||+.+++++..+.+|...|.+++|++   .+|++|+.||.|++||+++....   .....|...|.+++|+  
T Consensus       191 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--  265 (435)
T 1p22_A          191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--  265 (435)
T ss_dssp             TTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--
Confidence            999999999999999999999999999999974   58999999999999999987765   3344678899999993  


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                       +.++++|+.||.|++||+++.         ..+..+.+|...|.+++|+  + .+|++|+.||.|++||+++++  ++.
T Consensus       266 -~~~l~s~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~--~~~  330 (435)
T 1p22_A          266 -DKYIVSASGDRTIKVWNTSTC---------EFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA--CLR  330 (435)
T ss_dssp             -TTEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC--EEE
T ss_pred             -CCEEEEEeCCCeEEEEECCcC---------cEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCC--EEE
Confidence             348999999999999999986         7788899999999999996  3 799999999999999999987  577


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      .+.+|...|.+++|  ++. +|++|+.||.|++||+.++.
T Consensus       331 ~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          331 VLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHT
T ss_pred             EEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCC
Confidence            78889999999999  566 59999999999999997765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-29  Score=245.76  Aligned_cols=232  Identities=6%  Similarity=0.032  Sum_probs=180.4

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .+++++|++|+.||.|++||+..+..+..                           +  ....|.++.|+|.    +++|
T Consensus        45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~---------------------------~--~~~~v~~~~~~~~----~~s~   91 (343)
T 3lrv_A           45 YYDKWVCMCRCEDGALHFTQLKDSKTITT---------------------------I--TTPNPRTGGEHPA----IISR   91 (343)
T ss_dssp             SEEEEEEEEEEETTEEEEEEESSSSCEEE---------------------------E--EEECCCTTCCCCS----EEEE
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCcEEEE---------------------------E--ecCCceeeeeCCc----eEEe
Confidence            46799999999999999999976433221                           1  1466888889887    8999


Q ss_pred             ecCCcEEEEECC---------CCeeeEEec-cCCCCeEEEEEcC--CCCcEEEEEECCCcEEEEeCCCCCCccce-Eeec
Q 010769          286 SADKQVKIWDVA---------AGKCNLTLE-HHTDKVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFK-WAVA  352 (502)
Q Consensus       286 s~Dg~v~vwd~~---------~~~~~~~~~-~h~~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~  352 (502)
                      +.|++|++|+..         +++.+..+. .|...|.+++|+|  ++ .+|++++.||+|++||+++++..... ..+.
T Consensus        92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~  170 (343)
T 3lrv_A           92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSD  170 (343)
T ss_dssp             CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred             cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence            999999999665         555455543 6778999999999  88 89999999999999999988764332 2345


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCcc-EEEec-CCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS-FTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      ..+.+++|+|++. ++++|+.||.|++||+++.         ..+ ..+.. |..+|++++|+|++ .+|++++ ++.|+
T Consensus       171 ~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~---------~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~  238 (343)
T 3lrv_A          171 VEYSSGVLHKDSL-LLALYSPDGILDVYNLSSP---------DQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVV  238 (343)
T ss_dssp             CCCCEEEECTTSC-EEEEECTTSCEEEEESSCT---------TSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEE
T ss_pred             CceEEEEECCCCC-EEEEEcCCCEEEEEECCCC---------CCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEE
Confidence            5799999999875 8999999999999999987         334 67777 99999999999998 8999999 55999


Q ss_pred             EEECCCCCeeE-EEEecCCCCCE--EEEEEcCCCCcEEEEEeC-CCcEEEEECCCCcc
Q 010769          431 LWDLSNNQPSC-IASRNPKAGAV--FSVAFSEDSPFVLAIGGS-KGKLEIWDTLSDAG  484 (502)
Q Consensus       431 vwd~~~~~~~~-~~~~~~~~~~v--~~~~~spd~~~llasg~~-dg~i~vwd~~~~~~  484 (502)
                      +||+++.+... +..+..|...+  .+++|+|++++ |++++. ++.|+||++.+...
T Consensus       239 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN-MIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             EEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE-EEEEETTTTEEEEEEECTTTC
T ss_pred             EEEcCCCCcceeecccccccccccceEEEECCCCCE-EEEecCCCCcEEEEEEccccc
Confidence            99999876321 11112233333  46999999996 777777 99999999976554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.3e-29  Score=250.76  Aligned_cols=207  Identities=15%  Similarity=0.096  Sum_probs=173.0

Q ss_pred             CCcccceeeEEecCCCCcEEEEEecCCcEEEEECC--CCeeeEEec--cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769          263 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA--AGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       263 ~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~--~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  338 (502)
                      .+|...|++++|+|++..++++|+.||+|+|||+.  +++++..+.  .|...|++++|+|++ .+|++|+.+|.|++|+
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSID  177 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEe
Confidence            46788999999999955445999999999999999  888888875  567899999999999 8999999999999999


Q ss_pred             CCCCCCcc----ceEeecCCeEEEEeCCC--CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE-EecCCCCeeEEE
Q 010769          339 ARISTHSG----FKWAVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTIS  411 (502)
Q Consensus       339 ~~~~~~~~----~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~  411 (502)
                      +.......    ....|...|.+++|+|+  +..+|++++.|+.|++||+++.         ..+.. +.+|...|.+++
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~  248 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC---------FIVDKWLFGHKHFVSSIC  248 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT---------TCEEEECCCCSSCEEEEE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC---------ceeeeeecCCCCceEEEE
Confidence            98876543    56678899999999997  2348999999999999999876         45555 568999999999


Q ss_pred             EcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-----------------------CCCCCEEEEEEcCCCCcEEEEE
Q 010769          412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-----------------------PKAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       412 ~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-----------------------~~~~~v~~~~~spd~~~llasg  468 (502)
                      |+ ++ .+|++++.|+.|++||+.+++........                       .....|.+++|+|++++ |+++
T Consensus       249 ~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~  325 (450)
T 2vdu_B          249 CG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF-VAFF  325 (450)
T ss_dssp             EC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE-EEEE
T ss_pred             EC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE-EEEE
Confidence            99 76 99999999999999999998854333321                       23457999999999996 5555


Q ss_pred             e-CCCcEEEEEC--CCC
Q 010769          469 G-SKGKLEIWDT--LSD  482 (502)
Q Consensus       469 ~-~dg~i~vwd~--~~~  482 (502)
                      + .++.|+||++  .++
T Consensus       326 ~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          326 VEATKCIIILEMSEKQK  342 (450)
T ss_dssp             ETTCSEEEEEEECSSST
T ss_pred             ECCCCeEEEEEeccCCC
Confidence            5 8999999999  554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-29  Score=251.68  Aligned_cols=264  Identities=9%  Similarity=0.067  Sum_probs=198.1

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      -...|.+++|+|+|++||+|+.++   +++    +....  ..+..|..     ...++++       +|+|       .
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~---TV~----d~~~~--~~l~gh~~-----~v~~V~F-------sPdg-------~   65 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDI---SIG----QPKYA--KDINCNSK-----NLFHVKE-------FPLE-------F   65 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSE---EEE----EECCC--SCCSSBGG-----GTEEEEE-------ECCC-------C
T ss_pred             hhccEEEEEECCCCCEEEEEcCCc---eee----ccccc--ceecCCCc-----cEEEEEE-------CCCC-------C
Confidence            357899999999999999999886   333    22221  12222222     2245555       6777       4


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      ++.+.+|+...   ..                         ...+ .|...|.+++|+|+ +.+||+++.||+|++|+..
T Consensus        66 ~~~~~~~~~~~---~~-------------------------~~~~-~~~~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~  115 (588)
T 2j04_A           66 ENKLDFELAQQ---NG-------------------------LLNS-QPVCYPRVCKPSPI-DDWMAVLSNNGNVSVFKDN  115 (588)
T ss_dssp             CCTTTTSCCCS---SC-------------------------SSTT-SCSCCEEEEEECSS-SSCEEEEETTSCEEEEETT
T ss_pred             cceEEEEeCCC---ce-------------------------Eeec-CCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCC
Confidence            55555554331   11                         1111 45789999999999 5699999999999999954


Q ss_pred             CCeeeEEeccCCC-----CeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-------ccce----EeecCCeEEEEeC
Q 010769          298 AGKCNLTLEHHTD-----KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-------SGFK----WAVAADVESLAWD  361 (502)
Q Consensus       298 ~~~~~~~~~~h~~-----~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~----~~~~~~v~~v~~~  361 (502)
                      .  ++..+. |..     .|.+++|+|+| ++|++|+.||+|++||+..+..       ....    .+|...|.+++|+
T Consensus       116 ~--~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS  191 (588)
T 2j04_A          116 K--MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY  191 (588)
T ss_dssp             E--EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE
T ss_pred             c--eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc
Confidence            4  666677 665     59999999999 9999999999999999998753       1111    2345689999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      |++   +++++.|+.|++|++.....      .....++ .+|...|.+++|+  + ..||+++ +++|++||+.+++. 
T Consensus       192 Pdg---Laass~D~tVrlWd~~~~~~------~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~-  257 (588)
T 2j04_A          192 EDV---LVAALSNNSVFSMTVSASSH------QPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSI-  257 (588)
T ss_dssp             TTE---EEEEETTCCEEEECCCSSSS------CCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEE-
T ss_pred             CCc---EEEEeCCCeEEEEECCCCcc------ccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeE-
Confidence            976   78888999999999987621      0123456 4788999999999  5 7888887 69999999998763 


Q ss_pred             EEEEecCCCCCEEEEEE--cCCCCcEEEEEeCCCcEEEEECC
Q 010769          441 CIASRNPKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       441 ~~~~~~~~~~~v~~~~~--spd~~~llasg~~dg~i~vwd~~  480 (502)
                       .....+|.+.|..++|  +|++. .|++++.+|+ ++|...
T Consensus       258 -~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~~d  296 (588)
T 2j04_A          258 -SSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             -EEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEESS
T ss_pred             -EEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEeec
Confidence             2233379999999999  99998 6999999999 999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.7e-29  Score=241.82  Aligned_cols=282  Identities=9%  Similarity=0.041  Sum_probs=198.7

Q ss_pred             ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010769          143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE  222 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~  222 (502)
                      ....+.+++++|++|+.++   .+++|.+....    .+.....    ..+.++.|       +|.   +++|+.|+.|+
T Consensus        40 ~~~~~~~d~~~l~sg~~Dg---~v~iwd~~~~~----~~~~~~~----~~v~~~~~-------~~~---~~s~s~D~~i~   98 (343)
T 3lrv_A           40 LNKSMYYDKWVCMCRCEDG---ALHFTQLKDSK----TITTITT----PNPRTGGE-------HPA---IISRGPCNRLL   98 (343)
T ss_dssp             ECSSSSEEEEEEEEEEETT---EEEEEEESSSS----CEEEEEE----ECCCTTCC-------CCS---EEEECSTTEEE
T ss_pred             hhhhhcCCCCEEEEECCCC---cEEEEECCCCc----EEEEEec----CCceeeee-------CCc---eEEecCCCeEE
Confidence            3446668899999999998   55666665443    2222221    11233333       555   99999999999


Q ss_pred             EeeCCCCCCCCceeeeCCcchhhhhhccccCCccc-cccccCCcccceeeEEecC--CCCcEEEEEecCCcEEEEECCCC
Q 010769          223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSS-IKYKKGSHTDSVLGLAWNK--EFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~l~~~~--~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      +|+........     .             ..... ......+|...|.+++|+|  + +.+|++|+.||+|++||+.++
T Consensus        99 ~w~~~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~  159 (343)
T 3lrv_A           99 LLYPGNQITIL-----D-------------SKTNKVLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDD  159 (343)
T ss_dssp             EEETTTEEEEE-----E-------------TTTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSS
T ss_pred             EEEccCceEEe-----e-------------cCCcceeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCC
Confidence            99886311000     0             00011 1122336778999999999  8 569999999999999999999


Q ss_pred             eeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc-cceEe-ecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          300 KCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWA-VAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       300 ~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~-~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      +++..+. .|...|.+++|+|++ .+|++|+.||.|++||++++... ..... |...|.+++|+|++. ++++++ ++.
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~  236 (343)
T 3lrv_A          160 SQYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQT  236 (343)
T ss_dssp             CEEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSB
T ss_pred             cEEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCe
Confidence            9877663 456689999999999 89999999999999999998876 33444 789999999999875 788888 559


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCee--EEEEcCCCCCEEEEEeC-CCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC--TISYNPLVPNLLATGST-DKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~sp~~~~~l~t~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      |++||+++....      ..+..+..|...+.  +++|+|++ .+|++++. |+.|++|++.......  ..    .++.
T Consensus       237 v~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~~~~--~~----~~~~  303 (343)
T 3lrv_A          237 VVCFDLRKDVGT------LAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKTKNW--TK----DEES  303 (343)
T ss_dssp             EEEEETTSSTTC------BSSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCSE--EE----EEEE
T ss_pred             EEEEEcCCCCcc------eeecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccccce--Ee----cCce
Confidence            999999987321      11222222444444  69999998 89999888 9999999997654221  11    5677


Q ss_pred             EEEEcC---CCCcEEEEEeCCCcEEEEECCC
Q 010769          454 SVAFSE---DSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       454 ~~~~sp---d~~~llasg~~dg~i~vwd~~~  481 (502)
                      .++|.|   +... |++++.+|.+.++-...
T Consensus       304 ~~~~~~~~~~~~~-l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          304 ALCLQSDTADFTD-MDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             ECCC----CCCCE-EEEEEETTEEEEEEECS
T ss_pred             eEecCccccccce-eEEEecCCceEEEEecC
Confidence            888988   7774 77888899888876543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=2.9e-28  Score=241.70  Aligned_cols=275  Identities=17%  Similarity=0.191  Sum_probs=205.7

Q ss_pred             cceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee
Q 010769          193 PLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      ..|++|       +| ++++||+|+.||.|+||++..............              .........+|...|.+
T Consensus        46 v~~~~~-------s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~  104 (408)
T 4a11_B           46 INTLDI-------EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV--------------CSIGRDHPDVHRYSVET  104 (408)
T ss_dssp             EEEEEE-------CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE--------------EEECTTCTTCCSSCEEE
T ss_pred             EEEEEE-------ecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc--------------ccccccccccCCCcEEE
Confidence            378887       78 899999999999999999987554433211000              00011123469999999


Q ss_pred             EEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCC--cEEEEEECCCcEEEEeCCCCCCccceE
Q 010769          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~  349 (502)
                      ++|+|+++.+|++|+.||.|++||+.+++.+..+. +...+.++.|++.+.  .++++++.+|.|++||++++.......
T Consensus       105 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  183 (408)
T 4a11_B          105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ  183 (408)
T ss_dssp             EEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred             EEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence            99999657799999999999999999999888887 788899999998652  499999999999999999888777666


Q ss_pred             eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC-------CCCCCccEEEecCCCCeeEEEEcCCCCCEEEE
Q 010769          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-------STSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      .+...|.+++|+|++..++++++.+|.|++||+++......       ............|...|.+++|+|++ .+|++
T Consensus       184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~  262 (408)
T 4a11_B          184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLT  262 (408)
T ss_dssp             CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEE
T ss_pred             CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEE
Confidence            78899999999999887899999999999999987631000       00011122226789999999999988 89999


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEec---CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          423 GSTDKMVKLWDLSNNQPSCIASRN---PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~---~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ++.||.|++||+.+++........   .....+........+. .+++++.++.|++||+.+++.+....++
T Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~  333 (408)
T 4a11_B          263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS-EFVFVPYGSTIAVYTVYSGEQITMLKGH  333 (408)
T ss_dssp             EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSS-CEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred             ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCc-eEEEEecCCEEEEEECcCCcceeeeccC
Confidence            999999999999987642221111   1111121122222333 3666788999999999999888766544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.7e-28  Score=240.14  Aligned_cols=279  Identities=13%  Similarity=0.113  Sum_probs=207.9

Q ss_pred             ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCCCCC
Q 010769          152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVID  230 (502)
Q Consensus       152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~~~~  230 (502)
                      .++++++.++     .|++|+...........+|     ..+.+++|       +|++++| ++++.++.|++||+.++.
T Consensus         3 ~l~vs~~~d~-----~v~v~d~~~~~~~~~~~~~-----~~~~~~~~-------s~dg~~l~~~~~~d~~i~v~d~~~~~   65 (391)
T 1l0q_A            3 FAYIANSESD-----NISVIDVTSNKVTATIPVG-----SNPMGAVI-------SPDGTKVYVANAHSNDVSIIDTATNN   65 (391)
T ss_dssp             EEEEEETTTT-----EEEEEETTTTEEEEEEECS-----SSEEEEEE-------CTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEEEEcCCCC-----EEEEEECCCCeEEEEeecC-----CCcceEEE-------CCCCCEEEEECCCCCeEEEEECCCCe
Confidence            4566666665     5555554443111111222     33567777       7899876 677789999999997533


Q ss_pred             CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCC
Q 010769          231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD  310 (502)
Q Consensus       231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~  310 (502)
                      ...                           .+..| ..|.+++|+|++..++++++.++.|++||+.+++.+..+..| .
T Consensus        66 ~~~---------------------------~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~  116 (391)
T 1l0q_A           66 VIA---------------------------TVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-K  116 (391)
T ss_dssp             EEE---------------------------EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-S
T ss_pred             EEE---------------------------EEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-C
Confidence            211                           11223 389999999996655567777899999999999998888754 5


Q ss_pred             CeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 010769          311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD  390 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  390 (502)
                      .+.+++|+|++..++++++.++.|++||+++++... .......+.+++|+|++..++++++.++.|++||+++.     
T Consensus       117 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-----  190 (391)
T 1l0q_A          117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN-TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----  190 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----
Confidence            789999999994455788889999999998876554 34445678999999998766678889999999999876     


Q ss_pred             CCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe---CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEE
Q 010769          391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS---TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI  467 (502)
Q Consensus       391 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llas  467 (502)
                          .....+. +...+.+++|+|++ .+|++++   .++.|++||+.+++.  +..+..+ ..+.+++|+|++++++++
T Consensus       191 ----~~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~-~~~~~~~~s~dg~~l~~s  261 (391)
T 1l0q_A          191 ----SVIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKI--TARIPVG-PDPAGIAVTPDGKKVYVA  261 (391)
T ss_dssp             ----EEEEEEE-CSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEE--EEEEECC-SSEEEEEECTTSSEEEEE
T ss_pred             ----eEEEEEe-cCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeE--EEEEecC-CCccEEEEccCCCEEEEE
Confidence                4444444 56688999999998 6677666   789999999998874  4444444 358899999999977788


Q ss_pred             EeCCCcEEEEECCCCccccccccC
Q 010769          468 GGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       468 g~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ++.++.|++||+.+++.+.....+
T Consensus       262 ~~~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          262 LSFXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECS
T ss_pred             cCCCCEEEEEECCCCcEEEEEECC
Confidence            889999999999998877655433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.8e-29  Score=243.69  Aligned_cols=213  Identities=24%  Similarity=0.366  Sum_probs=183.7

Q ss_pred             ccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC--CCeeeEEeccCCCCeEEEEEcCC--CCcEEEEEECCCcEEE
Q 010769          261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVM  336 (502)
Q Consensus       261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~v  336 (502)
                      .+.+|...|++++|+|+ +.+|++|+.||.|+||++.  +++.+..+.+|...|++++|++.  + .+|++++.||.|++
T Consensus         6 ~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLI   83 (379)
T ss_dssp             CEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEE
T ss_pred             EecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEE
Confidence            45689999999999999 5699999999999999998  66778889999999999999877  6 89999999999999


Q ss_pred             EeCCCCC--CccceEeecCCeEEEEeCCCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEc
Q 010769          337 KDARIST--HSGFKWAVAADVESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN  413 (502)
Q Consensus       337 wd~~~~~--~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  413 (502)
                      ||+++..  .......+...|.+++|+|+. ..++++++.+|.|++||++....       .....+..|...|.+++|+
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~v~~~~~~  156 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-------TSPIIIDAHAIGVNSASWA  156 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-------CCEEEEECCTTCEEEEEEC
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-------eeeEEecCCCCceEEEEEc
Confidence            9999876  334344578899999999982 34899999999999999987631       4455678899999999999


Q ss_pred             CC------------CCCEEEEEeCCCcEEEEECCCCCe--eEEEEecCCCCCEEEEEEcCC---CCcEEEEEeCCCcEEE
Q 010769          414 PL------------VPNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSED---SPFVLAIGGSKGKLEI  476 (502)
Q Consensus       414 p~------------~~~~l~t~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~spd---~~~llasg~~dg~i~v  476 (502)
                      |.            .+.+|++++.|+.|++||++....  .....+..|...|.+++|+|+   +. +|++++.||.|++
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~i  235 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCII  235 (379)
T ss_dssp             CCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEE
T ss_pred             CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEE
Confidence            94            238999999999999999987653  355677889999999999999   66 6999999999999


Q ss_pred             EECCCCc
Q 010769          477 WDTLSDA  483 (502)
Q Consensus       477 wd~~~~~  483 (502)
                      ||+.++.
T Consensus       236 wd~~~~~  242 (379)
T 3jrp_A          236 WTQDNEQ  242 (379)
T ss_dssp             EEESSTT
T ss_pred             EeCCCCC
Confidence            9999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=9.9e-29  Score=241.34  Aligned_cols=251  Identities=19%  Similarity=0.308  Sum_probs=196.9

Q ss_pred             cceeeeecCCCCCCCC---CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccce
Q 010769          193 PLCMAWLDCPLKDREK---GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  269 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~---~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  269 (502)
                      ..|++|       +|+   |++|++|+.||.|+||++....                         ......+.+|...|
T Consensus        42 v~~~~~-------~~~~~~g~~l~~~~~dg~i~iw~~~~~~-------------------------~~~~~~~~~h~~~v   89 (368)
T 3mmy_A           42 IGCLSF-------SPPTLPGNFLIAGSWANDVRCWEVQDSG-------------------------QTIPKAQQMHTGPV   89 (368)
T ss_dssp             EEEEEE-------CCTTSSSEEEEEEETTSEEEEEEECTTS-------------------------CEEEEEEEECSSCE
T ss_pred             eEEEEE-------cCCCCCceEEEEECCCCcEEEEEcCCCC-------------------------ceeEEEeccccCCE
Confidence            378888       677   6999999999999999997421                         11223445799999


Q ss_pred             eeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEE--cCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769          270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW--NHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  347 (502)
                      ++++|+|+ +.+|++|+.||.|++||+.+++.+. +..|...|.+++|  +|++ .+|++++.||.|++||+++.+... 
T Consensus        90 ~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~-  165 (368)
T 3mmy_A           90 LDVCWSDD-GSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMM-  165 (368)
T ss_dssp             EEEEECTT-SSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSE-
T ss_pred             EEEEECcC-CCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEE-
Confidence            99999998 6699999999999999999998776 4569999999999  8888 899999999999999999887665 


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCC---CCEEEEE
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLV---PNLLATG  423 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~---~~~l~t~  423 (502)
                      .......+.++.+.+  . .+++++.++.+++|+++...        ...... ..+...+.++++.+..   +..++++
T Consensus       166 ~~~~~~~~~~~~~~~--~-~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (368)
T 3mmy_A          166 VLQLPERCYCADVIY--P-MAVVATAERGLIVYQLENQP--------SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG  234 (368)
T ss_dssp             EEECSSCEEEEEEET--T-EEEEEEGGGCEEEEECSSSC--------EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred             EEecCCCceEEEecC--C-eeEEEeCCCcEEEEEecccc--------chhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence            444556777777775  3 78888999999999998752        222222 2234455666665543   1339999


Q ss_pred             eCCCcEEEEECCCCCe-eEEEEecCCCC------------CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769          424 STDKMVKLWDLSNNQP-SCIASRNPKAG------------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~-~~~~~~~~~~~------------~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      +.||.|++|++..... ..+..+..|..            .|++++|+|++++ |++|+.||.|++||+.+++++.....
T Consensus       235 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (368)
T 3mmy_A          235 SIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRFSFWDKDARTKLKTSEQ  313 (368)
T ss_dssp             ETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-EEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             cCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE-EEEEccCCeEEEEECCCCcEEEEecC
Confidence            9999999999998743 23445555554            7999999999995 89999999999999999988776554


Q ss_pred             C
Q 010769          491 K  491 (502)
Q Consensus       491 ~  491 (502)
                      +
T Consensus       314 ~  314 (368)
T 3mmy_A          314 L  314 (368)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9e-30  Score=273.00  Aligned_cols=257  Identities=16%  Similarity=0.226  Sum_probs=198.9

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCC--CCEEE
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK--GNFMA  213 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~--~~~la  213 (502)
                      ..|...|.+++|+|++++|++|+.++   .+.||.+..........+..|    .....|+.|       +++  +++|+
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg---~I~vwd~~~~~~~~~~~l~~h----~~~V~~l~~-------s~~~~~~~l~   71 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDK---TIKIFEVEGETHKLIDTLTGH----EGPVWRVDW-------AHPKFGTILA   71 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTT---EEEEEEEETTEEEEEEEECCC----SSCEEEEEE-------CCTTSCSEEE
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCC---cEEEEecCCCCCccceeccCC----cCceEEEEe-------cCCCCCCEEE
Confidence            45889999999999999999999887   677777763322100111112    233467877       555  99999


Q ss_pred             EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEEEEecCCcEE
Q 010769          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVK  292 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~Dg~v~  292 (502)
                      +|+.||.|++|++....                         ......+.+|...|++++|+|+. +.+|++|+.||+|+
T Consensus        72 s~s~Dg~I~vwd~~~~~-------------------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~  126 (753)
T 3jro_A           72 SCSYDGKVLIWKEENGR-------------------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS  126 (753)
T ss_dssp             EEETTSCEEEEEEETTE-------------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred             EEeCCCeEEEEECCCCc-------------------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE
Confidence            99999999999986421                         11233445799999999999983 45999999999999


Q ss_pred             EEECCCCe--eeEEeccCCCCeEEEEEcCC------------CCcEEEEEECCCcEEEEeCCCCCCc----cceEeecCC
Q 010769          293 IWDVAAGK--CNLTLEHHTDKVQAVAWNHH------------SPQILLSGSFDRSVVMKDARISTHS----GFKWAVAAD  354 (502)
Q Consensus       293 vwd~~~~~--~~~~~~~h~~~v~~l~~~~~------------~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~  354 (502)
                      +||+.++.  ....+.+|...|.+++|+|.            ++.+|++|+.||.|++||+++....    .....|...
T Consensus       127 vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~  206 (753)
T 3jro_A          127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW  206 (753)
T ss_dssp             EEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred             EEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence            99998873  44566789999999999995            2389999999999999999887532    223357889


Q ss_pred             eEEEEeCCCC--CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          355 VESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       355 v~~v~~~p~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      |.+++|+|++  +.++++++.||.|++||+++.....    .........|...|++++|+|++ .+|++|+.||.|++|
T Consensus       207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~----~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vw  281 (753)
T 3jro_A          207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLW  281 (753)
T ss_dssp             EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC----BCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECC
T ss_pred             EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc----eeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEE
Confidence            9999999984  4589999999999999999863211    12333445688999999999998 899999999999999


Q ss_pred             ECCC
Q 010769          433 DLSN  436 (502)
Q Consensus       433 d~~~  436 (502)
                      ++..
T Consensus       282 d~~~  285 (753)
T 3jro_A          282 KENL  285 (753)
T ss_dssp             BCCS
T ss_pred             ecCC
Confidence            9974

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.5e-27  Score=228.42  Aligned_cols=252  Identities=21%  Similarity=0.365  Sum_probs=203.1

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       |+++ +||+|. |++|+|||+.+++.+.                         ...+.+|...|++++
T Consensus        29 ~~l~W-------S~~~-~lAvg~-D~tV~iWd~~tg~~~~-------------------------~~~~~~~~~~V~~v~   74 (318)
T 4ggc_A           29 NLVDW-------SSGN-VLAVAL-DNSVYLWSASSGDILQ-------------------------LLQMEQPGEYISSVA   74 (318)
T ss_dssp             BCEEE-------CTTS-EEEEEE-TTEEEEEETTTCCEEE-------------------------EEECCSTTCCEEEEE
T ss_pred             eEEEE-------CCCC-EEEEEe-CCEEEEEECCCCCEEE-------------------------EEEecCCCCeEEEEE
Confidence            46778       6654 788775 8999999998654322                         123457889999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc-cceEeec
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVA  352 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~  352 (502)
                      |+|+ +++|++|+.||+|++|++.+++++..+.+|...+.++.+.+   .++++++.++.+++|+....... .....|.
T Consensus        75 ~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (318)
T 4ggc_A           75 WIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHS  150 (318)
T ss_dssp             ECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             ECCC-CCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCcc
Confidence            9999 56999999999999999999999999999999998877764   68999999999999999876543 3345678


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEE--EEeCCCcEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA--TGSTDKMVK  430 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~--t~s~dg~i~  430 (502)
                      ..+.++.|++.+. ++++++.||.|++||++++...     .........|.+.|.+++++|.++.+++  +++.+++|+
T Consensus       151 ~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~  224 (318)
T 4ggc_A          151 QEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGG-----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR  224 (318)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTB-----SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred             CceEEEEEcCCCC-EEEEEecCcceeEEECCCCccc-----ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence            8999999999875 8999999999999999876321     2345667788899999999998766654  566789999


Q ss_pred             EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCccccccccCC
Q 010769          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG-GSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg-~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      +|+.......   ....+...+..+.|+|++.++++++ +.|+.|+|||+.+++++..+.+|.
T Consensus       225 lwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~  284 (318)
T 4ggc_A          225 IWNVCSGACL---SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT  284 (318)
T ss_dssp             EEETTTCCEE---EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred             EEeccccccc---ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC
Confidence            9999988732   2234557799999999998755443 378999999999999988776654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.8e-29  Score=268.93  Aligned_cols=238  Identities=16%  Similarity=0.189  Sum_probs=192.7

Q ss_pred             CcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee
Q 010769          192 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       192 ~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      .+.|++|       +|++++||+|+.||.|+||+......                           . ....|...|.+
T Consensus        19 ~V~~laf-------spdg~~lAsgs~Dg~I~lw~~~~~~~---------------------------~-~~~~~~~~V~~   63 (902)
T 2oaj_A           19 KPIAAAF-------DFTQNLLAIATVTGEVHIYGQQQVEV---------------------------V-IKLEDRSAIKE   63 (902)
T ss_dssp             CEEEEEE-------ETTTTEEEEEETTSEEEEECSTTCEE---------------------------E-EECSSCCCEEE
T ss_pred             CcEEEEE-------CCCCCEEEEEeCCCEEEEEeCCCcEE---------------------------E-EEcCCCCCEEE
Confidence            3468877       79999999999999999999764211                           1 11247889999


Q ss_pred             EEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc------
Q 010769          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS------  345 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------  345 (502)
                      |+|+| +. +|++++.|++|+|||+.+++++..+. |...|++++|+|++ .+|++|+.||.|++||+++....      
T Consensus        64 l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~  139 (902)
T 2oaj_A           64 MRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDN  139 (902)
T ss_dssp             EEEET-TT-EEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred             EEEcC-CC-EEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceecc
Confidence            99999 45 99999999999999999999998886 67899999999999 89999999999999999876642      


Q ss_pred             -----cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-----------------
Q 010769          346 -----GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----------------  403 (502)
Q Consensus       346 -----~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-----------------  403 (502)
                           .....|.+.|.+++|+|++...+++|+.+|.| +||+++.         .++..+..|                 
T Consensus       140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~  209 (902)
T 2oaj_A          140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN---------EIKQSFIYELPPFAPGGDFSEKTNEK  209 (902)
T ss_dssp             HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT---------EEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred             ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC---------ceEEEEecccCCcCCCcccccccccc
Confidence                 11234678899999999766689999999999 9999986         455555544                 


Q ss_pred             -CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec----------------CCCCCEEEEEEc----CCCC
Q 010769          404 -DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN----------------PKAGAVFSVAFS----EDSP  462 (502)
Q Consensus       404 -~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~----------------~~~~~v~~~~~s----pd~~  462 (502)
                       ...|++++|+|++ .+|++|+.||+|++||++++++.....+.                .|..+|++++|+    |++.
T Consensus       210 h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~  288 (902)
T 2oaj_A          210 RTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYT  288 (902)
T ss_dssp             BCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEE
T ss_pred             cCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCC
Confidence             5789999999998 99999999999999999998754332221                134579999995    5554


Q ss_pred             cEEEEEeCC-----CcEEEEEC
Q 010769          463 FVLAIGGSK-----GKLEIWDT  479 (502)
Q Consensus       463 ~llasg~~d-----g~i~vwd~  479 (502)
                      .+|++|+.+     ..+++|++
T Consensus       289 ~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          289 SLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EEEEEEECSTTSSCCCEEEEEE
T ss_pred             EEEEeCCCCCCCCCceEEEEec
Confidence            578888776     37899985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=6.1e-28  Score=241.96  Aligned_cols=283  Identities=8%  Similarity=0.038  Sum_probs=210.6

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeee-e--c-cccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH-H--H-IIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~-~--~-~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..+.+++|+|++.++++++.++   .+.+|  +....   .+... .  . ......+.++.|       ++++++++++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~---~i~~~--d~~~g---~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~s~  187 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDE---GMDVL--DINSG---QTVRLSPPEKYKKKLGFVETISI-------PEHNELWVSQ  187 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSS---SEEEE--ETTTC---CEEEECCCHHHHTTCCEEEEEEE-------GGGTEEEEEE
T ss_pred             CCceEEEEeCCCeEEEEeCCCC---eEEEE--ECCCC---eEeeecCcccccccCCceeEEEE-------cCCCEEEEEE
Confidence            4567999999666666665554   34444  44433   21110 0  0 001122355666       6789999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.++.|++||+.....                           ...+..|...+.+++|+|++..++++++.++.|++||
T Consensus       188 ~~d~~v~~~d~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d  240 (433)
T 3bws_A          188 MQANAVHVFDLKTLAY---------------------------KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID  240 (433)
T ss_dssp             GGGTEEEEEETTTCCE---------------------------EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCCceE---------------------------EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence            9999999999975322                           1223368889999999999665556777899999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE--------CCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS  367 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--------~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~  367 (502)
                      +.+++.+..+..+ ..+.+++|+|++ .+|++++        .||.|++||+++++... ...+...+.+++|+|++..+
T Consensus       241 ~~~~~~~~~~~~~-~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~l  317 (433)
T 3bws_A          241 RKTKLEIRKTDKI-GLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLID-TIGPPGNKRHIVSGNTENKI  317 (433)
T ss_dssp             TTTTEEEEECCCC-SEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-EEEEEECEEEEEECSSTTEE
T ss_pred             CCCCcEEEEecCC-CCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEe-eccCCCCcceEEECCCCCEE
Confidence            9999998888754 569999999999 6777777        58899999999876544 44566789999999998767


Q ss_pred             EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC---------------CCcEEEE
Q 010769          368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---------------DKMVKLW  432 (502)
Q Consensus       368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~---------------dg~i~vw  432 (502)
                      +++++.++.|++||+.+.         ..+..+. +...+.+++|+|++ .+|++++.               ||.|++|
T Consensus       318 ~~~~~~~~~v~v~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~  386 (433)
T 3bws_A          318 YVSDMCCSKIEVYDLKEK---------KVQKSIP-VFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVI  386 (433)
T ss_dssp             EEEETTTTEEEEEETTTT---------EEEEEEE-CSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred             EEEecCCCEEEEEECCCC---------cEEEEec-CCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEE
Confidence            788899999999999875         4555554 77889999999998 77777665               5799999


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      |+.+++.  +..+.. ...+.+++|+|++++++++++.++.|++|++..
T Consensus       387 d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          387 DTTTDTV--KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             ETTTTEE--EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ECCCCcE--EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9998874  333433 457999999999996444444599999999863

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.2e-27  Score=239.95  Aligned_cols=301  Identities=11%  Similarity=0.072  Sum_probs=223.0

Q ss_pred             cccccccc---ccCCCceEEEEEecCCc-----------ceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCC
Q 010769          139 SEDLEDMT---INPNDAVIVCARNEDDV-----------SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK  204 (502)
Q Consensus       139 ~~~v~~~~---~~p~~~~l~~~~~~~~~-----------~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~  204 (502)
                      ...+..++   |+|+++.+++++.....           ..+.||.++....   .+........+..+.++.|      
T Consensus        60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~~~~~~~~~~~~~~~~~~------  130 (433)
T 3bws_A           60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGI---THRFISRFKTGFQPKSVRF------  130 (433)
T ss_dssp             TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTC---SEEEEEEEECSSCBCCCEE------
T ss_pred             CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCC---cceEEEEEcCCCCceEEEE------
Confidence            34567777   88888877766543321           1126676665433   3333333334455567776      


Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                       +|++.++++++.++.|++||+.++.....                      .....+.+|...|.+++|+++ +.++++
T Consensus       131 -s~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------------~~~~~~~~~~~~v~~~~~~~~-~~~~~s  186 (433)
T 3bws_A          131 -IDNTRLAIPLLEDEGMDVLDINSGQTVRL----------------------SPPEKYKKKLGFVETISIPEH-NELWVS  186 (433)
T ss_dssp             -SSSSEEEEEBTTSSSEEEEETTTCCEEEE----------------------CCCHHHHTTCCEEEEEEEGGG-TEEEEE
T ss_pred             -eCCCeEEEEeCCCCeEEEEECCCCeEeee----------------------cCcccccccCCceeEEEEcCC-CEEEEE
Confidence             67888899999999999999976432210                      011123478899999999998 679999


Q ss_pred             EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~  364 (502)
                      ++.|+.|++||+.+++.+..+..|...+.+++|+|++..++++++.++.|++||+++++... .......+.+++|+|++
T Consensus       187 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~g  265 (433)
T 3bws_A          187 QMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR-KTDKIGLPRGLLLSKDG  265 (433)
T ss_dssp             EGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-ECCCCSEEEEEEECTTS
T ss_pred             ECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE-EecCCCCceEEEEcCCC
Confidence            99999999999999999999988999999999999994444666689999999998776543 33345568999999987


Q ss_pred             CCEEEEEe--------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          365 EHSFVVSL--------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       365 ~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      . .+++++        .+|.|++||++++         ..+.. ..|...+.+++|+|++..++++++.++.|++||+.+
T Consensus       266 ~-~l~~~~~~~~~~~~~dg~i~~~d~~~~---------~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~  334 (433)
T 3bws_A          266 K-ELYIAQFSASNQESGGGRLGIYSMDKE---------KLIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE  334 (433)
T ss_dssp             S-EEEEEEEESCTTCSCCEEEEEEETTTT---------EEEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred             C-EEEEEECCCCccccCCCeEEEEECCCC---------cEEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence            6 566655        5889999999875         33333 346668999999999856778889999999999998


Q ss_pred             CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC---------------CCcEEEEECCCCcccccc
Q 010769          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS---------------KGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~---------------dg~i~vwd~~~~~~~~~~  488 (502)
                      ++.  +..+. +...+.+++|+|++++ |++++.               ||.|++||+.+++.+...
T Consensus       335 ~~~--~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          335 KKV--QKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             TEE--EEEEE-CSSSEEEEEECTTSSE-EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             CcE--EEEec-CCCCCCeEEEcCCCCE-EEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence            763  33333 5577999999999996 555554               579999999998876554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=6.6e-29  Score=246.00  Aligned_cols=297  Identities=12%  Similarity=0.079  Sum_probs=184.6

Q ss_pred             eeccccCCCcceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCCCc----eeeeCCcchhhhhhccccCCcccc
Q 010769          184 HHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQP----HVILGGIDEEKKKKKSKKGKKSSI  258 (502)
Q Consensus       184 ~~~~~~~~~~~~~~w~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~  258 (502)
                      -|..+++.+|+++.|...    +++ ++++++| .++.|++|+.........    ...+.........  .........
T Consensus         9 ~~~lpl~~~p~~~~w~~~----~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   81 (393)
T 4gq1_A            9 QYQLPLNVRPYTTTWCSQ----SPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPT--LHLSFSSSC   81 (393)
T ss_dssp             EEECCTTCCEEEEEECTT----SGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCE--EEEEECTTC
T ss_pred             ceEecCCCCCeEEEEeCC----CCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCe--eeEeecCCc
Confidence            356778899999999643    444 4555555 578899998643211110    0000000000000  000000011


Q ss_pred             ccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeee-----EEeccCCCCeEEEEEcC--------CCCcEE
Q 010769          259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN-----LTLEHHTDKVQAVAWNH--------HSPQIL  325 (502)
Q Consensus       259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~-----~~~~~h~~~v~~l~~~~--------~~~~~l  325 (502)
                      ......|...+....+.++ ..+|++|+.|++|+|||+.++.+.     ..+.+|.+.|++++|+|        ++ ++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~l  159 (393)
T 4gq1_A           82 SYSENLHDGDGNVNSSPVY-SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVI  159 (393)
T ss_dssp             EEECC----------CCEE-EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEE
T ss_pred             cccccccCCCcceeecCCC-CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEE
Confidence            1122234333444444444 678999999999999999988643     34689999999999997        55 899


Q ss_pred             EEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCC------------
Q 010769          326 LSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS------------  393 (502)
Q Consensus       326 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------  393 (502)
                      ++|+.|++|+|||+++.........+...+.+++|+|++..+|++++.||.|++||+++.........            
T Consensus       160 as~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~  239 (393)
T 4gq1_A          160 ASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL  239 (393)
T ss_dssp             EEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE
T ss_pred             EEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec
Confidence            99999999999999988777777889999999999998877899999999999999988643211000            


Q ss_pred             ----CCccEEEecCCCCeeEEEEc-CCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE-------------
Q 010769          394 ----QQSSFTLHAHDKAVCTISYN-PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV-------------  455 (502)
Q Consensus       394 ----~~~~~~~~~h~~~v~~l~~s-p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-------------  455 (502)
                          ........+|...+.++.|+ |++ ..|++++.|+++++||+..++.  ...+..|...+..+             
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (393)
T 4gq1_A          240 NTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANND--YNEISDSTMKLGPKNLLPNVQGISLFP  316 (393)
T ss_dssp             ESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSC
T ss_pred             ccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCC--CceEeeecCccccEEEccccccccccC
Confidence                00112234688899999997 566 8999999999999999987652  22222333323222             


Q ss_pred             -----EEc-CCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          456 -----AFS-EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       456 -----~~s-pd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                           .|+ +.+..++++|+.||.|+|||+.++..+.....+.
T Consensus       317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~  359 (393)
T 4gq1_A          317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG  359 (393)
T ss_dssp             CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred             cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence                 233 3344457788889999999999998877665543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=1.6e-27  Score=232.70  Aligned_cols=239  Identities=11%  Similarity=0.170  Sum_probs=179.8

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..|++|       +|+|++||+|+.++ ++||++.......                           .  .+...+..+
T Consensus        22 V~~v~f-------s~dg~~la~g~~~~-~~iw~~~~~~~~~---------------------------~--~~~~~~~~~   64 (355)
T 3vu4_A           22 VTDYEF-------NQDQSCLILSTLKS-FEIYNVHPVAHIM---------------------------S--QEMRHLSKV   64 (355)
T ss_dssp             CCEEEE-------CTTSSEEEEECSSE-EEEEEETTEEEEE---------------------------E--EECSCCCEE
T ss_pred             eEEEEE-------CCCCCEEEEEcCCE-EEEEecCCcceee---------------------------e--eecCCeEEE
Confidence            368777       89999999998775 7899986422110                           0  112247778


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC-CCccceEee
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-THSGFKWAV  351 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~  351 (502)
                      ++.+....++++|+.|++|+|||+.+++++..+. |...|.++.|+++.   ++++ .++.|++||+.+. +....... 
T Consensus        65 ~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~-  138 (355)
T 3vu4_A           65 RMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR-  138 (355)
T ss_dssp             EECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE-
T ss_pred             EEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc-
Confidence            8888754445678889999999999999999887 66799999999864   4443 4789999999987 44433322 


Q ss_pred             cCCeEEEEeCCCCCCEEEE--EeCCCeEEEEECCCCCCCCCC------CCCCc-cEEEecCCCCeeEEEEcCCCCCEEEE
Q 010769          352 AADVESLAWDPHAEHSFVV--SLEDGTIKGFDIRTAKSDPDS------TSQQS-SFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~------~~~~~-~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                        ....+++++  . ++++  |+.+|.|++||+++.......      ....+ +..+.+|...|++++|+|++ .+|++
T Consensus       139 --~~~~~~~s~--~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s  212 (355)
T 3vu4_A          139 --FGGVCEFSN--G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVAT  212 (355)
T ss_dssp             --EEEEEEEET--T-EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred             --CCceEEEEc--c-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEE
Confidence              444556666  3 4554  689999999999975210000      00023 78889999999999999998 99999


Q ss_pred             EeCCCc-EEEEECCCCCeeEEEEec-C-CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          423 GSTDKM-VKLWDLSNNQPSCIASRN-P-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       423 ~s~dg~-i~vwd~~~~~~~~~~~~~-~-~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      |+.|++ |++||+++++  ++..+. + |.+.|++++|+|++. +|++++.|++|+|||+..+.
T Consensus       213 ~s~d~~~v~iwd~~~~~--~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          213 CSQDGTIIRVFKTEDGV--LVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EETTCSEEEEEETTTCC--EEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCS
T ss_pred             EeCCCCEEEEEECCCCc--EEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCC
Confidence            999998 9999999988  455555 4 889999999999999 59999999999999998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1.1e-27  Score=234.77  Aligned_cols=260  Identities=8%  Similarity=0.054  Sum_probs=189.9

Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecCCC-------cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccC
Q 010769          191 AFPLCMAWLDCPLKDREKGNFMAVGSMEP-------AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG  263 (502)
Q Consensus       191 ~~~~~~~w~~~~~~~s~~~~~la~g~~dg-------~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  263 (502)
                      .+.+|++|       +|++++||+|+.+.       .|+||+++.........                 ........+.
T Consensus        15 ~PV~sv~f-------s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~-----------------~~~~~~~~l~   70 (365)
T 4h5i_A           15 YPAYGAKF-------LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ-----------------FHILSEFALE   70 (365)
T ss_dssp             SCEEEEEE-------EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH-----------------EEEEEEEECC
T ss_pred             CCEEEEEE-------eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee-----------------eeeeeEEEcc
Confidence            33478877       68999999997543       59999987533211100                 0011223466


Q ss_pred             CcccceeeEEecCCCCcEEEEE-----------ecCCcEEEEECCCCee----eEEe-----ccCCCCeEEEEEcCCCCc
Q 010769          264 SHTDSVLGLAWNKEFRNILASA-----------SADKQVKIWDVAAGKC----NLTL-----EHHTDKVQAVAWNHHSPQ  323 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sg-----------s~Dg~v~vwd~~~~~~----~~~~-----~~h~~~v~~l~~~~~~~~  323 (502)
                      +|...|++++++++   .+++|           +.|+++++|++.....    +...     ..+...+.+++|+|+| +
T Consensus        71 ~~~~~v~s~~~~~~---~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~  146 (365)
T 4h5i_A           71 DNDDSPTAIDASKG---IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-T  146 (365)
T ss_dssp             TTSCCCCEEEEETT---EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-S
T ss_pred             CCCCceEEEEeCCC---EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-C
Confidence            88999999988754   56655           4578899999865432    1111     2244568999999999 6


Q ss_pred             EEEE--EECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe
Q 010769          324 ILLS--GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH  401 (502)
Q Consensus       324 ~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  401 (502)
                      ++++  ++.|++|++||+++..... ...+...|.+++|+|++. ++++++ ++.+.+|+..++.       ........
T Consensus       147 ~la~as~~~d~~i~iwd~~~~~~~~-~~~~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~-------~~~~~~~~  216 (365)
T 4h5i_A          147 VAAIASSKVPAIMRIIDPSDLTEKF-EIETRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGS-------CIARKTDF  216 (365)
T ss_dssp             CEEEEESCSSCEEEEEETTTTEEEE-EEECSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCC-------EEEEECCC
T ss_pred             EEEEEECCCCCEEEEeECCCCcEEE-EeCCCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCc-------ceeeeecC
Confidence            6654  4478999999999877655 456788899999999876 677776 4556677766651       11223345


Q ss_pred             cCCCCeeEEEEcCCCCCEEEEEeCCC----cEEEEECCCCCee--EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEE
Q 010769          402 AHDKAVCTISYNPLVPNLLATGSTDK----MVKLWDLSNNQPS--CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE  475 (502)
Q Consensus       402 ~h~~~v~~l~~sp~~~~~l~t~s~dg----~i~vwd~~~~~~~--~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~  475 (502)
                      .|...|.+++|+|++ .++++++.++    .+++|++......  ....+..|...|++++|+|+|+ +||+|+.|++|+
T Consensus       217 ~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~  294 (365)
T 4h5i_A          217 DKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIA  294 (365)
T ss_dssp             CTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEE
T ss_pred             CCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEE
Confidence            688899999999998 8899988887    5888998776532  3455678889999999999999 599999999999


Q ss_pred             EEECCCCcccccccc
Q 010769          476 IWDTLSDAGISNRFS  490 (502)
Q Consensus       476 vwd~~~~~~~~~~~~  490 (502)
                      |||+.+++++.....
T Consensus       295 iwd~~~~~~~~~~~~  309 (365)
T 4h5i_A          295 LVKLKDLSMSKIFKQ  309 (365)
T ss_dssp             EEETTTTEEEEEETT
T ss_pred             EEECCCCcEEEEecC
Confidence            999999998887653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.5e-27  Score=236.62  Aligned_cols=237  Identities=11%  Similarity=0.054  Sum_probs=176.8

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..+++|       +|||+++|+++.|++|+  +.....                              .+.+|...|.++
T Consensus        18 v~sv~~-------SpDG~~iASas~D~TV~--d~~~~~------------------------------~l~gh~~~v~~V   58 (588)
T 2j04_A           18 KNNLTW-------ARDGTLYLTTFPDISIG--QPKYAK------------------------------DINCNSKNLFHV   58 (588)
T ss_dssp             SCCEEE-------CTTSCEEEECSSSEEEE--EECCCS------------------------------CCSSBGGGTEEE
T ss_pred             EEEEEE-------CCCCCEEEEEcCCceee--cccccc------------------------------eecCCCccEEEE
Confidence            356666       89999999999999999  643211                              124799999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      +|+|++        .++++.+|+.... .+..+ .|...|.+++|+|+| .+|++++.||.|++|+...  ..... .+.
T Consensus        59 ~FsPdg--------~~~~~~~~~~~~~-~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l-~~~  124 (588)
T 2j04_A           59 KEFPLE--------FENKLDFELAQQN-GLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNL-DSK  124 (588)
T ss_dssp             EEECCC--------CCCTTTTSCCCSS-CSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEEC-CCS
T ss_pred             EECCCC--------CcceEEEEeCCCc-eEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeec-cCC
Confidence            999995        4566666654322 22233 458899999999999 8999999999999999644  22211 233


Q ss_pred             C-----CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE----ecCCCCeeEEEEcCCCCCEEEEE
Q 010769          353 A-----DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL----HAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       353 ~-----~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .     .+.+++|+|+|. ++++|+.||+|++||+..+.....  ....+.++    .+|...|.+++|+|+|   ++++
T Consensus       125 ~~~~~~sv~svafSPDG~-~LAsgs~DGtVkIWd~~~~~l~~~--~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laas  198 (588)
T 2j04_A          125 GNLSSRTYHCFEWNPIES-SIVVGNEDGELQFFSIRKNSENTP--EFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAA  198 (588)
T ss_dssp             SCSTTTCEEEEEECSSSS-CEEEEETTSEEEEEECCCCTTTCC--CCEEEEEEECSCTTCCCCEEEEEEETTE---EEEE
T ss_pred             CccccccEEEEEEcCCCC-EEEEEcCCCEEEEEECCCCccccc--cceeeeeeecccccccccEEEEEEcCCc---EEEE
Confidence            3     499999999876 899999999999999987621000  00024565    5677899999999976   8889


Q ss_pred             eCCCcEEEEECCCCCee-EEEEe-cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          424 STDKMVKLWDLSNNQPS-CIASR-NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~-~~~~~-~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      +.|++|++|++..+... ....+ .+|...|.+++|+  +. .||+++ +++|++||+.++......++|.
T Consensus       199 s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~  265 (588)
T 2j04_A          199 LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSL  265 (588)
T ss_dssp             ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCC
T ss_pred             eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCC
Confidence            99999999999887632 22344 4788899999999  55 578776 6999999999887744444543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=2.9e-26  Score=215.42  Aligned_cols=196  Identities=16%  Similarity=0.158  Sum_probs=148.5

Q ss_pred             CcccceeeEEecCCCCcEEEEEe--cCCcEEEEEC-CCCeeeEEeccCCCCeEEEEEcC---CCCcEEEEEECCCcEEEE
Q 010769          264 SHTDSVLGLAWNKEFRNILASAS--ADKQVKIWDV-AAGKCNLTLEHHTDKVQAVAWNH---HSPQILLSGSFDRSVVMK  337 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs--~Dg~v~vwd~-~~~~~~~~~~~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~vw  337 (502)
                      +|...|+++   ++ ++++.+++  .|++|++|++ ..++.+..+.+|...+..++|++   ++ .+|++|+.|++|+||
T Consensus       134 g~~~~v~~l---~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIW  208 (356)
T 2w18_A          134 GNIKAVLGL---TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIW  208 (356)
T ss_dssp             EEEEEEEEE---TT-TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEE
T ss_pred             CCeEEEEec---CC-CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEE
Confidence            455555554   34 54555543  5999999999 45888888889999999999998   55 899999999999999


Q ss_pred             eCCCCCCccceEee---cCCeEEEEeCCCCCCE-----------EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE---
Q 010769          338 DARISTHSGFKWAV---AADVESLAWDPHAEHS-----------FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL---  400 (502)
Q Consensus       338 d~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~-----------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---  400 (502)
                      |+++++....+..+   ...+.+++|+|++..+           +++|+.|++|++||..++         +.+..+   
T Consensus       209 Dl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg---------k~l~v~~~~  279 (356)
T 2w18_A          209 NLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT---------LSVGVMLYC  279 (356)
T ss_dssp             ETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT---------EEEEEEEEC
T ss_pred             ECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC---------EEEEEEEee
Confidence            99999876655433   2357788999987532           256788999999999876         443333   


Q ss_pred             --ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE-EEEEcCCCCcEEEEEeCCCcEEEE
Q 010769          401 --HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF-SVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       401 --~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~spd~~~llasg~~dg~i~vw  477 (502)
                        .+|...+.+..++  + .++++++.|++|+|||+.+++  ++.++.+|...+. +++|+|+|+ +|++|+.|++|+||
T Consensus       280 ~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk--~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklW  353 (356)
T 2w18_A          280 LPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQ--CTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVY  353 (356)
T ss_dssp             CCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCS--EEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEE
T ss_pred             ccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCc--EEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEe
Confidence              3566655555555  4 789999999999999999998  6777888876655 689999999 59999999999999


Q ss_pred             EC
Q 010769          478 DT  479 (502)
Q Consensus       478 d~  479 (502)
                      |+
T Consensus       354 d~  355 (356)
T 2w18_A          354 HY  355 (356)
T ss_dssp             EE
T ss_pred             cC
Confidence            96

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.2e-25  Score=222.12  Aligned_cols=238  Identities=14%  Similarity=0.097  Sum_probs=186.1

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      +.++++++.++.|++||+..+...                           ..+..| ..+.+++|+|++..++++++.|
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~---------------------------~~~~~~-~~~~~~~~s~dg~~l~~~~~~d   53 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVT---------------------------ATIPVG-SNPMGAVISPDGTKVYVANAHS   53 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEE---------------------------EEEECS-SSEEEEEECTTSSEEEEEEGGG
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEE---------------------------EEeecC-CCcceEEECCCCCEEEEECCCC
Confidence            357889999999999999753221                           122234 4589999999966556888899


Q ss_pred             CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEE
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  368 (502)
                      ++|++||+.+++.+..+..+. .+.+++|+|++..++++++.++.|++||+.+++... ...+...+.+++|+|++..++
T Consensus        54 ~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           54 NDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG-TVKTGKSPLGLALSPDGKKLY  131 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEECSSSEEEEEECTTSSEEE
T ss_pred             CeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE-EEeCCCCcceEEECCCCCEEE
Confidence            999999999999998887655 899999999994445666678999999999876654 445567789999999987666


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC
Q 010769          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK  448 (502)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~  448 (502)
                      ++++.++.|++||++++         +.+..+..| ..+.+++|+|++..++++++.++.|++||+++++.  +.... +
T Consensus       132 ~~~~~~~~v~~~d~~~~---------~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~-~  198 (391)
T 1l0q_A          132 VTNNGDKTVSVINTVTK---------AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV--IDTVK-V  198 (391)
T ss_dssp             EEETTTTEEEEEETTTT---------EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEE-C
T ss_pred             EEeCCCCEEEEEECCCC---------cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE--EEEEe-c
Confidence            78888999999999876         556666554 45799999999844457888899999999998863  33333 4


Q ss_pred             CCCEEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCccccccc
Q 010769          449 AGAVFSVAFSEDSPFVLAIGG--SKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       449 ~~~v~~~~~spd~~~llasg~--~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ...+.+++|+|++.++++++.  .++.|++||+.+++.+....
T Consensus       199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~  241 (391)
T 1l0q_A          199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP  241 (391)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE
T ss_pred             CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe
Confidence            467999999999996444443  68999999999887765543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=5.8e-26  Score=213.37  Aligned_cols=186  Identities=13%  Similarity=0.139  Sum_probs=140.6

Q ss_pred             CCCEEEEec--CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecC---CCCcEE
Q 010769          208 KGNFMAVGS--MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRNIL  282 (502)
Q Consensus       208 ~~~~la~g~--~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~~l  282 (502)
                      +++++.+++  .++.|++|++...                          .+....+.+|...+..++|++   + +.+|
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~d--------------------------G~~~~s~~~~~~~v~~l~fs~~~g~-~~~L  196 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAED--------------------------GGGKENQFLMPPEETILTFAEVQGM-QEAL  196 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTT--------------------------SCEEEEEEECCCSSCEEEEEEEETS-TTEE
T ss_pred             CCcEEEecccCCCCcEEEEEECCC--------------------------CceeeeeccCCCceeeEEeeccCCC-CceE
Confidence            577777744  6899999998531                          112223447888999999998   4 5799


Q ss_pred             EEEecCCcEEEEECCCCeeeEEeccCC---CCeEEEEEcCCCCcEE------------EEEECCCcEEEEeCCCCCCccc
Q 010769          283 ASASADKQVKIWDVAAGKCNLTLEHHT---DKVQAVAWNHHSPQIL------------LSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l------------~s~~~dg~i~vwd~~~~~~~~~  347 (502)
                      ++|+.|++|+|||+.++++++++.+|.   ..+.+++|+|++ .++            ++|+.|++|++||..++.....
T Consensus       197 aSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v  275 (356)
T 2w18_A          197 LGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV  275 (356)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred             EEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence            999999999999999999999997643   467888999998 655            6688999999999988765432


Q ss_pred             eE-----eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCee-EEEEcCCCCCEEE
Q 010769          348 KW-----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC-TISYNPLVPNLLA  421 (502)
Q Consensus       348 ~~-----~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~l~  421 (502)
                      ..     ++...+.+..++   ..++++++.||+|++||+.++         +.+.++.+|...+. +++|+|++ .+|+
T Consensus       276 ~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tG---------k~l~tL~gH~~~vvs~vafSPDG-~~La  342 (356)
T 2w18_A          276 MLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLG---------QCTALLPPVSDQHWSFVKWSGTD-SHLL  342 (356)
T ss_dssp             EEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTC---------SEEEEECCC--CCCCEEEECSSS-SEEE
T ss_pred             EEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCC---------cEEEEecCCCCCeEEEEEECCCC-CEEE
Confidence            21     222233333333   237899999999999999987         78889998987655 58999998 9999


Q ss_pred             EEeCCCcEEEEEC
Q 010769          422 TGSTDKMVKLWDL  434 (502)
Q Consensus       422 t~s~dg~i~vwd~  434 (502)
                      +|+.|++|+|||+
T Consensus       343 SGS~D~TIklWd~  355 (356)
T 2w18_A          343 AGQKDGNIFVYHY  355 (356)
T ss_dssp             EECTTSCEEEEEE
T ss_pred             EEECCCcEEEecC
Confidence            9999999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=2.6e-23  Score=213.76  Aligned_cols=312  Identities=11%  Similarity=0.087  Sum_probs=216.4

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCC----CCCEEEEecC
Q 010769          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE----KGNFMAVGSM  217 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~----~~~~la~g~~  217 (502)
                      +..+.|+|++++|++++.++   .+.+|.......   .  ..........|..+++       +|    +|++|++++.
T Consensus       181 ~~~v~~spdg~~l~v~~~d~---~V~v~D~~~~t~---~--~~~~i~~g~~p~~va~-------sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDA---RIDMIDLWAKEP---T--KVAEIKIGIEARSVES-------SKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTS---EEEEEETTSSSC---E--EEEEEECCSEEEEEEE-------CCSTTCTTTEEEEEEE
T ss_pred             cceEEECCCCCEEEEECCCC---eEEEEECcCCCC---c--EEEEEecCCCcceEEe-------CCCcCCCCCEEEEEEc
Confidence            77899999999999998775   444444411322   1  2222223334455554       88    9999999985


Q ss_pred             -CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccc-ceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          218 -EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD-SVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       218 -dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                       +++|.|||..+...+..+...+.                . ......|.. .+.++.++|+++.++++...+++|.+||
T Consensus       246 ~~~~v~v~D~~t~~~~~~i~~~g~----------------~-~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd  308 (543)
T 1nir_A          246 WPPQFAIMDGETLEPKQIVSTRGM----------------T-VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN  308 (543)
T ss_dssp             ESSEEEEEETTTCCEEEEEECCEE----------------C-SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             cCCeEEEEeccccccceeecccCc----------------c-cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEE
Confidence             79999999876544332211100                0 000001333 7899999998788888999999999999


Q ss_pred             CCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe----ecCCeEEEEeCCCCCCEEE
Q 010769          296 VAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----VAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       296 ~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~v~~~p~~~~~l~  369 (502)
                      +.+.+.+.  .+. +...+..+.|+|++..+++++..+++|.+||+.+++.......    |.+....+ ++|++..+++
T Consensus       309 ~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~  386 (543)
T 1nir_A          309 YKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWS  386 (543)
T ss_dssp             CTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEE
T ss_pred             ecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEE
Confidence            98876543  443 5667889999999943445556689999999998876543321    33333333 4676555666


Q ss_pred             EEe-CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-------CCCcEEEEECCCCCee-
Q 010769          370 VSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-------TDKMVKLWDLSNNQPS-  440 (502)
Q Consensus       370 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-------~dg~i~vwd~~~~~~~-  440 (502)
                      ++. .+++|.+||+.+.....  ...+.+.++..|...+..++++|++ ++|++++       .+++|.|||+.+.+.. 
T Consensus       387 s~~~~d~~V~v~d~~~~~~~~--~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~  463 (543)
T 1nir_A          387 TSHLGDGSISLIGTDPKNHPQ--YAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAKY  463 (543)
T ss_dssp             EEBSSSSEEEEEECCTTTCTT--TBTSEEEEEECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred             eccCCCceEEEEEeCCCCCch--hcCeEEEEEEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCCCCCCe
Confidence            665 68999999998721100  0037788999999999999999998 8888877       2679999999988743 


Q ss_pred             EEEE------ecCCCCCEEEEEEcCCCCcEEEEEe----CCCcEEEEECCCCcccccccc
Q 010769          441 CIAS------RNPKAGAVFSVAFSEDSPFVLAIGG----SKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       441 ~~~~------~~~~~~~v~~~~~spd~~~llasg~----~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      ....      +..+...+..+.|+|+|.+++++..    .++.|.|||..+++++.++-.
T Consensus       464 ~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  523 (543)
T 1nir_A          464 QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  523 (543)
T ss_dssp             EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence            1211      1345678999999999998666543    479999999999998866553

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=4.2e-23  Score=212.14  Aligned_cols=287  Identities=12%  Similarity=0.102  Sum_probs=208.7

Q ss_pred             ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEe
Q 010769          145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW  224 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iw  224 (502)
                      ..++|++.++++++.++     .|.+|+....   .+.  ........+.++.+       +|+|++|++++.++.|++|
T Consensus       143 ~~~~p~~~~~vs~~~d~-----~V~v~D~~t~---~~~--~~i~~g~~~~~v~~-------spdg~~l~v~~~d~~V~v~  205 (543)
T 1nir_A          143 NDLDLPNLFSVTLRDAG-----QIALVDGDSK---KIV--KVIDTGYAVHISRM-------SASGRYLLVIGRDARIDMI  205 (543)
T ss_dssp             SCCCGGGEEEEEEGGGT-----EEEEEETTTC---CEE--EEEECSTTEEEEEE-------CTTSCEEEEEETTSEEEEE
T ss_pred             cccCCCCEEEEEEcCCC-----eEEEEECCCc---eEE--EEEecCcccceEEE-------CCCCCEEEEECCCCeEEEE
Confidence            35889998888887776     5555565443   222  11111111344444       8999999999999999999


Q ss_pred             eC--CCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecC----CCCcEEEEEe-cCCcEEEEECC
Q 010769          225 DL--DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK----EFRNILASAS-ADKQVKIWDVA  297 (502)
Q Consensus       225 dl--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~~~l~sgs-~Dg~v~vwd~~  297 (502)
                      |+  .+...+                           ..+. +...+.+++|+|    ++ .+|++++ .+++|.|||..
T Consensus       206 D~~~~t~~~~---------------------------~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          206 DLWAKEPTKV---------------------------AEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             ETTSSSCEEE---------------------------EEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETT
T ss_pred             ECcCCCCcEE---------------------------EEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEecc
Confidence            99  432211                           1111 335679999999    85 4677766 58999999999


Q ss_pred             CCeeeEEecc----------CC-CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecCCeEEEEeCCCCC
Q 010769          298 AGKCNLTLEH----------HT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       298 ~~~~~~~~~~----------h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~p~~~  365 (502)
                      +++++.++..          |. ..+.++.++|+++.++++...++.|.+||+.+.+... ....+...+..+.|+|++.
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~  336 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR  336 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence            9999888754          22 3789999999887888888899999999998765433 1334556788999999987


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec----CCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCC--
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQ--  438 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~~~~--  438 (502)
                      .+++++..++.|.+||+.++         +.+..+..    |.+....+ ++|++..++++++ .|++|.|||+.+..  
T Consensus       337 ~l~va~~~~~~v~v~D~~tg---------~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~  406 (543)
T 1nir_A          337 YFMTAANNSNKVAVIDSKDR---------RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP  406 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTT---------EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred             EEEEEecCCCeEEEEECCCC---------eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc
Confidence            55666667899999999987         55555553    55444443 4777547777776 58999999998711  


Q ss_pred             ---eeEEEEecCCCCCEEEEEEcCCCCcEEEEEe-------CCCcEEEEECCCCcccccc
Q 010769          439 ---PSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-------SKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       439 ---~~~~~~~~~~~~~v~~~~~spd~~~llasg~-------~dg~i~vwd~~~~~~~~~~  488 (502)
                         ..++.++..|.+.+..++|+|++++ |++++       .+++|.|||+.+++.+.+.
T Consensus       407 ~~~~~~v~~l~~~g~~~~~v~~~pdg~~-l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~  465 (543)
T 1nir_A          407 QYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDARISQSVAVFDLKNLDAKYQV  465 (543)
T ss_dssp             TTBTSEEEEEECSCSCCCCEECCTTCCE-EEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             hhcCeEEEEEEcCCCCceEEEcCCCCCc-EEEecCCCCCcccCceEEEEECCCCCCCeEE
Confidence               2367888888888889999999996 66655       2679999999999877443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=2.7e-23  Score=200.86  Aligned_cols=284  Identities=10%  Similarity=0.139  Sum_probs=182.4

Q ss_pred             CceEEEE-EecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-CcEEEeeCCC
Q 010769          151 DAVIVCA-RNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-PAIEIWDLDV  228 (502)
Q Consensus       151 ~~~l~~~-~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d-g~I~iwdl~~  228 (502)
                      +++|+++ +.++   .+.+|.++...    .+...........|.+++|       +|++++|++++.+ +.|.+|+++.
T Consensus         4 ~~~l~~~~~~~~---~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~v~~~~~~~   69 (343)
T 1ri6_A            4 KQTVYIASPESQ---QIHVWNLNHEG----ALTLTQVVDVPGQVQPMVV-------SPDKRYLYVGVRPEFRVLAYRIAP   69 (343)
T ss_dssp             EEEEEEEEGGGT---EEEEEEECTTS----CEEEEEEEECSSCCCCEEE-------CTTSSEEEEEETTTTEEEEEEECT
T ss_pred             eEEEEEeCCCCC---eEEEEEECCCC----cEEEeeeEecCCCCceEEE-------CCCCCEEEEeecCCCeEEEEEecC
Confidence            3455555 4444   56666665321    2222222233445667777       8999998888876 9999999972


Q ss_pred             CCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC---CCCeeeEEe
Q 010769          229 IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV---AAGKCNLTL  305 (502)
Q Consensus       229 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~---~~~~~~~~~  305 (502)
                      ....                       ......+..+ ..+.+++|+|++..+++++..++.|.+||+   ...+.+..+
T Consensus        70 ~~~~-----------------------~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  125 (343)
T 1ri6_A           70 DDGA-----------------------LTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV  125 (343)
T ss_dssp             TTCC-----------------------EEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE
T ss_pred             CCCc-----------------------eeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc
Confidence            1110                       0011111122 378999999995544445555899999999   444555555


Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEeCCC-CCCccc-----eEeecCCeEEEEeCCCCCCEEEEEeCCCeEE
Q 010769          306 EHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARI-STHSGF-----KWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       306 ~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~-----~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  378 (502)
                      ..+ ..+.+++|+|++ +++++++ .++.|.+||+.+ +.....     .......+..++|+|++..+++++..++.|.
T Consensus       126 ~~~-~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~  203 (343)
T 1ri6_A          126 EGL-DGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVD  203 (343)
T ss_dssp             CCC-TTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cCC-CCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEE
Confidence            543 468899999999 5566665 899999999987 433211     1112346889999999875556666899999


Q ss_pred             EEECCCCCCCCCCCCCCccEEEec------CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC--CCCeeEEEEecCCCC
Q 010769          379 GFDIRTAKSDPDSTSQQSSFTLHA------HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS--NNQPSCIASRNPKAG  450 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~--~~~~~~~~~~~~~~~  450 (502)
                      +|++......     .........      ....+.+++|+|++..+++++..++.|++|++.  ++....+.....+..
T Consensus       204 ~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~  278 (343)
T 1ri6_A          204 VWELKDPHGN-----IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ  278 (343)
T ss_dssp             EEESSCTTSC-----CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS
T ss_pred             EEEecCCCCc-----EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc
Confidence            9999642110     011222221      123567899999984444466679999999998  444444444444433


Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       451 ~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                       +.+++|+|+++++++++..++.|.+|++.
T Consensus       279 -~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          279 -PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             -CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             -cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence             88999999999755554478999999554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=4.8e-23  Score=205.18  Aligned_cols=231  Identities=11%  Similarity=0.113  Sum_probs=170.7

Q ss_pred             CCEEEEecCC------CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          209 GNFMAVGSME------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       209 ~~~la~g~~d------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +..++.++.+      +.|++||++...                            ...+.+|...|.+++|+|+ +..|
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~----------------------------~~~l~~~~~~v~~~~~Spd-g~~l  193 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN----------------------------QFVVHRSPQPLMSPAWSPD-GSKL  193 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS----------------------------CEEEEEESSCEEEEEECTT-SSEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC----------------------------CEEEeCCCCcceeeEEcCC-CCEE
Confidence            5666666554      799999986311                            1123368889999999999 5588


Q ss_pred             EEEecCC---cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc--EEEEeCCCCCCccceEeecCCeEE
Q 010769          283 ASASADK---QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDARISTHSGFKWAVAADVES  357 (502)
Q Consensus       283 ~sgs~Dg---~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~  357 (502)
                      ++++.++   .|++||+.++++. .+..|...+.+++|+|++..++++++.++.  |++||++++... ....+...+.+
T Consensus       194 a~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~  271 (415)
T 2hqs_A          194 AYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTE  271 (415)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEE
T ss_pred             EEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCCCcccc
Confidence            8888875   9999999998875 466688899999999999434447776665  999999886653 34456778999


Q ss_pred             EEeCCCCCCEEEEEe-CCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCC---CcEEE
Q 010769          358 LAWDPHAEHSFVVSL-EDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD---KMVKL  431 (502)
Q Consensus       358 v~~~p~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d---g~i~v  431 (502)
                      ++|+|++. .+++++ .++  .|++||+.++          ....+..|...+.+++|+|++ ++|++++.+   ..|++
T Consensus       272 ~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~----------~~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~  339 (415)
T 2hqs_A          272 PTWFPDSQ-NLAFTSDQAGRPQVYKVNINGG----------APQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAK  339 (415)
T ss_dssp             EEECTTSS-EEEEEECTTSSCEEEEEETTSS----------CCEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEE
T ss_pred             eEECCCCC-EEEEEECCCCCcEEEEEECCCC----------CEEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEE
Confidence            99999987 455544 455  6777788765          234455677789999999998 777776654   58999


Q ss_pred             EECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC---cEEEEECCCCcccccc
Q 010769          432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG---KLEIWDTLSDAGISNR  488 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg---~i~vwd~~~~~~~~~~  488 (502)
                      ||+.+++.   ..+..+. .+.+++|+|+|++ |++++.++   .|++||+.++ .+.++
T Consensus       340 ~d~~~~~~---~~l~~~~-~~~~~~~spdg~~-l~~~s~~~~~~~l~~~d~~g~-~~~~l  393 (415)
T 2hqs_A          340 QDLATGGV---QVLSSTF-LDETPSLAPNGTM-VIYSSSQGMGSVLNLVSTDGR-FKARL  393 (415)
T ss_dssp             EETTTCCE---EECCCSS-SCEEEEECTTSSE-EEEEEEETTEEEEEEEETTSC-CEEEC
T ss_pred             EECCCCCE---EEecCCC-CcCCeEEcCCCCE-EEEEEcCCCccEEEEEECCCC-cEEEe
Confidence            99998873   3344443 7999999999996 55566555   7999998743 34443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.8e-22  Score=193.20  Aligned_cols=284  Identities=8%  Similarity=0.010  Sum_probs=189.1

Q ss_pred             ccccCCCceE-EEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC-CCcEE
Q 010769          145 MTINPNDAVI-VCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-EPAIE  222 (502)
Q Consensus       145 ~~~~p~~~~l-~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~-dg~I~  222 (502)
                      ..|.++++.+ +++..++     .|++|+....   .+....... ...+ ++.|       +|+|++|++++. ++.|.
T Consensus         3 ~~~~~~~~~~~v~~~~~~-----~v~~~d~~~~---~~~~~~~~~-~~~~-~~~~-------s~dg~~l~~~~~~~~~i~   65 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLR-----RISFFSTDTL---EILNQITLG-YDFV-DTAI-------TSDCSNVVVTSDFCQTLV   65 (331)
T ss_dssp             ----CCCCEEEEEEGGGT-----EEEEEETTTC---CEEEEEECC-CCEE-EEEE-------CSSSCEEEEEESTTCEEE
T ss_pred             eeEcCCCCEEEEEecCCC-----eEEEEeCccc---ceeeeEEcc-CCcc-eEEE-------cCCCCEEEEEeCCCCeEE
Confidence            3456666654 4444444     6666665544   222211111 1122 5555       899987666655 88999


Q ss_pred             EeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC---cEEEEECCCC
Q 010769          223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK---QVKIWDVAAG  299 (502)
Q Consensus       223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg---~v~vwd~~~~  299 (502)
                      +||+......                          ...+..+..++.+++|+|++ .+|+++..++   .|.+||+.++
T Consensus        66 ~~d~~~~~~~--------------------------~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~  118 (331)
T 3u4y_A           66 QIETQLEPPK--------------------------VVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKN  118 (331)
T ss_dssp             EEECSSSSCE--------------------------EEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTT
T ss_pred             EEECCCCcee--------------------------EEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCC
Confidence            9999754320                          11122344555559999995 4666555543   8999999999


Q ss_pred             eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc-EEEEeCCCCCCcc----ceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSG----FKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~----~~~~~~~~v~~v~~~p~~~~~l~~~~~d  374 (502)
                      +.+..+.. ...+.+++|+|++..++++...++. |.+|++.......    ........+..++|+|++..+++++..+
T Consensus       119 ~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  197 (331)
T 3u4y_A          119 KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG  197 (331)
T ss_dssp             EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT
T ss_pred             CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC
Confidence            98888764 4457899999999556666677788 9999998644321    1223345689999999987666667779


Q ss_pred             CeEEEEECCCCCCCCCCCCCCc---cEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC---
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQS---SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK---  448 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~---  448 (502)
                      +.|++||+.++         ..   +..+. +...+..++|+|++..++++...++.|.+||+.+++...+.....+   
T Consensus       198 ~~v~v~d~~~~---------~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  267 (331)
T 3u4y_A          198 NSIGILETQNP---------ENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI  267 (331)
T ss_dssp             TEEEEEECSST---------TSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC
T ss_pred             CeEEEEECCCC---------cccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc
Confidence            99999999876         33   55555 3466789999999833445555678899999998875444433322   


Q ss_pred             -CC---CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          449 -AG---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       449 -~~---~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                       ..   ....++|+|+++++++++..++.|.+||+.+..
T Consensus       268 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          268 DPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence             11   224589999999766777777899999997654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.5e-22  Score=217.12  Aligned_cols=293  Identities=10%  Similarity=0.121  Sum_probs=203.9

Q ss_pred             ccccccccccCCCceEEEEEe-cCCcceeEEEEEecCCCCCCceeeeeccccC---------------------CCccee
Q 010769          139 SEDLEDMTINPNDAVIVCARN-EDDVSHLEVYILEESDGGDPNLYVHHHIIIP---------------------AFPLCM  196 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~-~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~---------------------~~~~~~  196 (502)
                      ...+.+++|+|+|++|++++. +++.....||+|+...+....+..++... +                     ....++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-PGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-cccccccchhhhhhhhhhhccccCccee
Confidence            346889999999999999987 54333456777776554222222222111 0                     012334


Q ss_pred             eeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecC
Q 010769          197 AWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK  276 (502)
Q Consensus       197 ~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~  276 (502)
                      .|       ||+|++|++++. +.|++|++......                         ....+..|...+.+++|+|
T Consensus       115 ~~-------SpDg~~l~~~~~-~~i~~~d~~~~~~~-------------------------~~~~l~~~~~~~~~~~~SP  161 (741)
T 2ecf_A          115 QW-------SPDAQRLLFPLG-GELYLYDLKQEGKA-------------------------AVRQLTHGEGFATDAKLSP  161 (741)
T ss_dssp             EE-------CTTSSEEEEEET-TEEEEEESSSCSTT-------------------------SCCBCCCSSSCEEEEEECT
T ss_pred             EE-------CCCCCEEEEEeC-CcEEEEECCCCCcc-------------------------eEEEcccCCcccccccCCC
Confidence            44       999999999986 99999999753100                         1112335778899999999


Q ss_pred             CCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCC----------------eEEEEEcCCCCcEEEEEECCC--------
Q 010769          277 EFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK----------------VQAVAWNHHSPQILLSGSFDR--------  332 (502)
Q Consensus       277 ~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~----------------v~~l~~~~~~~~~l~s~~~dg--------  332 (502)
                      ++ .+|++++ ++.|++||+.+++.......+...                +.++.|+|+| +.|++++.++        
T Consensus       162 DG-~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~  238 (741)
T 2ecf_A          162 KG-GFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKR  238 (741)
T ss_dssp             TS-SEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEE
T ss_pred             CC-CEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEec
Confidence            94 5787777 469999999998876655444432                4789999999 7777776655        


Q ss_pred             -------------------------cEEEEeCCC-CCCccceE--eecCCeEEEEeCCCCCCEEEEEe----CCCeEEEE
Q 010769          333 -------------------------SVVMKDARI-STHSGFKW--AVAADVESLAWDPHAEHSFVVSL----EDGTIKGF  380 (502)
Q Consensus       333 -------------------------~i~vwd~~~-~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~----~dg~i~i~  380 (502)
                                               .|.+||+.+ ++......  .+...+.+++| |++..+++++.    .++.|++|
T Consensus       239 ~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~  317 (741)
T 2ecf_A          239 YEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEV  317 (741)
T ss_dssp             EEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEE
T ss_pred             CCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEE
Confidence                                     788999987 66433222  24567899999 99874444433    35679999


Q ss_pred             ECCCCCCCCCCCCCCccEEEecCCC----CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE-
Q 010769          381 DIRTAKSDPDSTSQQSSFTLHAHDK----AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV-  455 (502)
Q Consensus       381 d~~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-  455 (502)
                      |+.++         .....+..+..    .+.+++|+|++ +++++++.+|.++||.+.....  ...+..+...|.++ 
T Consensus       318 d~~~g---------~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~--~~~l~~~~~~v~~~~  385 (741)
T 2ecf_A          318 TLASN---------QQRVLAHETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK--AAALTHGNWSVDELL  385 (741)
T ss_dssp             ETTTC---------CEEEEEEEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC--EEESCCSSSCEEEEE
T ss_pred             ECCCC---------ceEEEEEcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC--eeeeeecceEEEeEe
Confidence            99876         44444444443    45789999998 6899999999888887763222  45566677778887 


Q ss_pred             EEcCCCCcEEEEEeCCC--cEEEEECCC
Q 010769          456 AFSEDSPFVLAIGGSKG--KLEIWDTLS  481 (502)
Q Consensus       456 ~~spd~~~llasg~~dg--~i~vwd~~~  481 (502)
                      .|+|+++.++++++.++  .++||++..
T Consensus       386 ~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          386 AVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             EEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             EEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            59999997666776666  899999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=9.8e-22  Score=195.72  Aligned_cols=268  Identities=15%  Similarity=0.034  Sum_probs=186.6

Q ss_pred             CccccccccccC--------------CCceEEEEEecCCc-ceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCC
Q 010769          138 DSEDLEDMTINP--------------NDAVIVCARNEDDV-SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCP  202 (502)
Q Consensus       138 ~~~~v~~~~~~p--------------~~~~l~~~~~~~~~-~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~  202 (502)
                      |...+..+++++              .+..|+.++..... ..-.|++|+........+.. |.    ....+++|    
T Consensus       116 ~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~-~~----~~v~~~~~----  186 (415)
T 2hqs_A          116 NKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR-SP----QPLMSPAW----  186 (415)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEE-ES----SCEEEEEE----
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeC-CC----CcceeeEE----
Confidence            556677777775              15555555544211 01245555543322222223 32    23467777    


Q ss_pred             CCCCCCCCEEEEecCCC---cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC
Q 010769          203 LKDREKGNFMAVGSMEP---AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg---~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                         +|+|++||+++.++   .|++||+.++...                            .+..|...+.+++|+|++.
T Consensus       187 ---Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----------------------------~l~~~~~~~~~~~~spdg~  235 (415)
T 2hqs_A          187 ---SPDGSKLAYVTFESGRSALVIQTLANGAVR----------------------------QVASFPRHNGAPAFSPDGS  235 (415)
T ss_dssp             ---CTTSSEEEEEECTTSSCEEEEEETTTCCEE----------------------------EEECCSSCEEEEEECTTSS
T ss_pred             ---cCCCCEEEEEEecCCCcEEEEEECCCCcEE----------------------------EeecCCCcccCEEEcCCCC
Confidence               89999999999875   9999999753211                            2235777899999999965


Q ss_pred             cEEEEEecCCc--EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC-CC--cEEEEeCCCCCCccceEeecCC
Q 010769          280 NILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DR--SVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       280 ~~l~sgs~Dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~  354 (502)
                      .++++++.++.  |++||+.++++ ..+..|...+.+++|+|++ +.|++++. ++  .|.+||+.++.... ...+...
T Consensus       236 ~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~~~~~  312 (415)
T 2hqs_A          236 KLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQ  312 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSE
T ss_pred             EEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEEE-EecCCCc
Confidence            44447777665  99999998876 5677788899999999999 66776665 45  67777888765432 2334567


Q ss_pred             eEEEEeCCCCCCEEEEEeC--CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC---cE
Q 010769          355 VESLAWDPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---MV  429 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg---~i  429 (502)
                      +.+++|+|++..+++++..  ++.|++||+.++         .. ..+..|. .+.+++|+|++ ++|++++.++   .|
T Consensus       313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~---------~~-~~l~~~~-~~~~~~~spdg-~~l~~~s~~~~~~~l  380 (415)
T 2hqs_A          313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---------GV-QVLSSTF-LDETPSLAPNG-TMVIYSSSQGMGSVL  380 (415)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---------CE-EECCCSS-SCEEEEECTTS-SEEEEEEEETTEEEE
T ss_pred             ccCeEECCCCCEEEEEECcCCceEEEEEECCCC---------CE-EEecCCC-CcCCeEEcCCC-CEEEEEEcCCCccEE
Confidence            8899999998744444443  358999999875         22 3455554 89999999998 7787777766   79


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCc
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF  463 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~  463 (502)
                      ++||+....   ...+..|.+.|.+++|+|.-.|
T Consensus       381 ~~~d~~g~~---~~~l~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          381 NLVSTDGRF---KARLPATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             EEEETTSCC---EEECCCSSSEEEEEEECCCCCC
T ss_pred             EEEECCCCc---EEEeeCCCCCCcCCcccccccc
Confidence            999998654   5667888899999999997543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=8.9e-21  Score=184.05  Aligned_cols=291  Identities=11%  Similarity=0.102  Sum_probs=186.0

Q ss_pred             eEEEEEec-CCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC--CCcEEEeeCCCC
Q 010769          153 VIVCARNE-DDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM--EPAIEIWDLDVI  229 (502)
Q Consensus       153 ~l~~~~~~-~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~--dg~I~iwdl~~~  229 (502)
                      .+++|+.. +....+.+|.++...+   .+...........|..++|       +|+|++++++..  ++.|.+|++...
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg---~~~~~~~~~~~~~p~~~a~-------spdg~l~~~~~~~~~~~v~~~~~~~g   73 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAK---TLTNDGLLAATQNPTYLAL-------SAKDCLYSVDKEDDEGGIAAWQIDGQ   73 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTT---EEEEEEEEEECSCCCCEEE-------CTTCEEEEEEEETTEEEEEEEEEETT
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCC---eEEEeeeeeccCCcceEEE-------ccCCeEEEEEecCCCceEEEEEecCC
Confidence            34555432 2223678888887655   3332222222344555655       899994444432  689999998542


Q ss_pred             CCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe-cCCcEEEEECCC-C--eeeEEe
Q 010769          230 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAA-G--KCNLTL  305 (502)
Q Consensus       230 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs-~Dg~v~vwd~~~-~--~~~~~~  305 (502)
                      ..                         .....+..+...+..++|+|++. +|++++ .+++|.+|++.. +  +.+..+
T Consensus        74 ~~-------------------------~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~  127 (347)
T 3hfq_A           74 TA-------------------------HKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTV  127 (347)
T ss_dssp             EE-------------------------EEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             cE-------------------------EEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeeccee
Confidence            21                         11111224667789999999954 666666 789999999962 3  333333


Q ss_pred             cc---------CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE----eecCCeEEEEeCCCCCCEEEEEe
Q 010769          306 EH---------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       306 ~~---------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~v~~~p~~~~~l~~~~  372 (502)
                      ..         +...+.+++|+|++ +++++...++.|.+|++..........    .....+..++|+|++..+++++.
T Consensus       128 ~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~  206 (347)
T 3hfq_A          128 QHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE  206 (347)
T ss_dssp             ECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             ecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC
Confidence            21         12348899999999 577777778999999998322221111    12336788999999875666677


Q ss_pred             CCCeEEEEECCCCCCCCCCCCCCccEEEecCC------CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CCeeEEEEe
Q 010769          373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQPSCIASR  445 (502)
Q Consensus       373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~-~~~~~~~~~  445 (502)
                      .++.|.+|++......     ...+..+....      ..+..++|+|+|..+++++..++.|.+|++.. +....+...
T Consensus       207 ~~~~v~v~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~  281 (347)
T 3hfq_A          207 LSSQIASLKYDTQTGA-----FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI  281 (347)
T ss_dssp             TTTEEEEEEEETTTTE-----EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE
T ss_pred             CCCEEEEEEecCCCCc-----eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE
Confidence            8899999998752100     01222333222      34888999999833446677789999999973 344455555


Q ss_pred             cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEE--ECCCCccc
Q 010769          446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW--DTLSDAGI  485 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~llasg~~dg~i~vw--d~~~~~~~  485 (502)
                      ..+...+..++|+|+++++++++..++.|.+|  |..+++..
T Consensus       282 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          282 STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            65566688999999999755555556899999  44555543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=1.5e-21  Score=184.01  Aligned_cols=253  Identities=12%  Similarity=0.076  Sum_probs=176.1

Q ss_pred             EEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCC-CCCCCceeeeCCcchhh
Q 010769          167 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDV-IDEVQPHVILGGIDEEK  245 (502)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~-~~~~~~~~~l~~~~~~~  245 (502)
                      .|++|+........+..|     ...+.++.|       +|+|++|++++ ++.|++|++.. .....            
T Consensus        23 ~i~~~d~~~~~~~~~~~~-----~~~v~~~~~-------spdg~~l~~~~-~~~i~~~d~~~~~~~~~------------   77 (297)
T 2ojh_A           23 SIEIFNIRTRKMRVVWQT-----PELFEAPNW-------SPDGKYLLLNS-EGLLYRLSLAGDPSPEK------------   77 (297)
T ss_dssp             EEEEEETTTTEEEEEEEE-----SSCCEEEEE-------CTTSSEEEEEE-TTEEEEEESSSCCSCEE------------
T ss_pred             eEEEEeCCCCceeeeccC-----CcceEeeEE-------CCCCCEEEEEc-CCeEEEEeCCCCCCceE------------
Confidence            555565544321122222     334467777       89999999987 78999999975 32211            


Q ss_pred             hhhccccCCccccccccCCc-ccceeeEEecCCCCcEEEEEe--cCCcEEEE--ECCCCeeeEEeccCCCCeEEEEEcCC
Q 010769          246 KKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASAS--ADKQVKIW--DVAAGKCNLTLEHHTDKVQAVAWNHH  320 (502)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~sgs--~Dg~v~vw--d~~~~~~~~~~~~h~~~v~~l~~~~~  320 (502)
                                     ....| ...|.+++|+|+ +.+|++++  .++.+.||  ++.+++ ...+..+ ..+.+++|+|+
T Consensus        78 ---------------~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spd  139 (297)
T 2ojh_A           78 ---------------VDTGFATICNNDHGISPD-GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPD  139 (297)
T ss_dssp             ---------------CCCTTCCCBCSCCEECTT-SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTT
T ss_pred             ---------------eccccccccccceEECCC-CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCC
Confidence                           11123 477899999999 45788887  33445555  545554 3445433 35899999999


Q ss_pred             CCcEEEEEECCCcEEEEeCCCCC-CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE
Q 010769          321 SPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       321 ~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  399 (502)
                      +..++++++.++.+.+|++.... .......+...+.+++|+|++..+++++..++.+++|++...        ......
T Consensus       140 g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~--------~~~~~~  211 (297)
T 2ojh_A          140 GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD--------GSSVER  211 (297)
T ss_dssp             SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------SSCEEE
T ss_pred             CCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC--------CCCcEE
Confidence            94455588899999999965332 222234556789999999998754555556899999998743        245667


Q ss_pred             EecCCCCeeEEEEcCCCCCEEEEEeCC-----------CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEE
Q 010769          400 LHAHDKAVCTISYNPLVPNLLATGSTD-----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp~~~~~l~t~s~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg  468 (502)
                      +..|...+.+++|+|++ .+|++++.+           +.|++||+.+++...+.....|...+.+++|+|+++++++++
T Consensus       212 ~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          212 ITDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             CCCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred             EecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEE
Confidence            77788889999999998 777777665           569999999887666666667778899999999999755544


Q ss_pred             eCC
Q 010769          469 GSK  471 (502)
Q Consensus       469 ~~d  471 (502)
                      ..+
T Consensus       291 ~~~  293 (297)
T 2ojh_A          291 YFP  293 (297)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1.6e-20  Score=182.21  Aligned_cols=286  Identities=11%  Similarity=0.064  Sum_probs=195.1

Q ss_pred             ccccccccccCCCceEEEEEecCCc--ceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEE-EEe
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDV--SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVG  215 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~--~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~l-a~g  215 (502)
                      ...+..++|+|+++.|++++..+..  ..-.|++|+....   .+.  ........|.++.|       +|+|+++ +++
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~---~~~--~~~~~~~~~~~~~~-------s~dg~~l~v~~  107 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL---EVT--QAIHNDLKPFGATI-------NNTTQTLWFGN  107 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC---CEE--EEEEESSCCCSEEE-------ETTTTEEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC---eEE--EEEecCCCcceEEE-------CCCCCEEEEEe
Confidence            3457789999999999888754210  0126777776554   222  11223344566666       7888855 455


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe--cCCcEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS--ADKQVKI  293 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs--~Dg~v~v  293 (502)
                      ..++.|.+||+.+.........-..               .   .........+.+++|+|++. ++++++  .++.|.+
T Consensus       108 ~~~~~v~~~d~~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A          108 TVNSAVTAIDAKTGEVKGRLVLDDR---------------K---RTEEVRPLQPRELVADDATN-TVYISGIGKESVIWV  168 (353)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESCCC---------------C---CCSSCCCCEEEEEEEETTTT-EEEEEEESSSCEEEE
T ss_pred             cCCCEEEEEeCCCCeeEEEEecCCC---------------c---cccccCCCCCceEEECCCCC-EEEEEecCCCceEEE
Confidence            6679999999976543222110000               0   00001112378899999965 454444  5789999


Q ss_pred             EECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe----ecCCeEEEEeCCCCCCEEE
Q 010769          294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----VAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~v~~~p~~~~~l~  369 (502)
                      ||+.+++.+..+..+...+.+++|+|++ ..|++++.++.|.+||+.+.+.......    +...+..++|+|++..+++
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  247 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI  247 (353)
T ss_dssp             EETTTTEEEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred             EcCCCCceEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence            9999999998887666678999999999 7888888899999999988765543222    2345778999999875555


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC
Q 010769          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA  449 (502)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~  449 (502)
                      +...++.|.+||+.++         ..+..+..+.  ..+++|+|++..++++...++.|.+||+.+++.  +..+.. .
T Consensus       248 ~~~~~~~v~~~d~~~~---------~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~~-~  313 (353)
T 3vgz_A          248 TDSKAAEVLVVDTRNG---------NILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV--VKTFDT-P  313 (353)
T ss_dssp             EESSSSEEEEEETTTC---------CEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEEEC-C
T ss_pred             EeCCCCEEEEEECCCC---------cEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeE--EEEEec-C
Confidence            6666799999999876         4555555433  267999999844556666799999999998874  333333 3


Q ss_pred             CCEEEEEEcCCCCcEEEEEeC
Q 010769          450 GAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       450 ~~v~~~~~spd~~~llasg~~  470 (502)
                      ..+.+++|+|++++++++...
T Consensus       314 ~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          314 THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             SEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCeEEEcCCCCEEEEEEcc
Confidence            468999999999975555544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=3.1e-21  Score=192.93  Aligned_cols=218  Identities=11%  Similarity=0.103  Sum_probs=150.4

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCC------CCCceee---eeccccCCCcceeeeecCCCCCCCCC
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG------GDPNLYV---HHHIIIPAFPLCMAWLDCPLKDREKG  209 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~------~~~~l~~---~~~~~~~~~~~~~~w~~~~~~~s~~~  209 (502)
                      ...++.++++|++.+|++++.++    +.||.......      ....+..   ......+..+.+++|       +|+|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-------spdg  104 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG----LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL-------SCDN  104 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE----EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE-------CTTS
T ss_pred             CCCccEEEEecCCCEEEEECCCE----EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE-------cCCC
Confidence            44689999999999999987653    45543321100      0001110   011223444577777       8999


Q ss_pred             CEEE----EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          210 NFMA----VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       210 ~~la----~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++||    +|+.|+.|+|||+.......                ....+.......+.+|...|.+|+|+|+.+++|++|
T Consensus       105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~----------------~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A          105 LTLSACMMSSEYGSIIAFFDVRTFSNEA----------------KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             CEEEEEEEETTTEEEEEEEEHHHHHCTT----------------CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred             CEEEEEEeccCCCceEEEEEccccccCC----------------cCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence            9999    78999999999986420000                000001112334567999999999999867899999


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee-------cCCeEEE
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-------AADVESL  358 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~v  358 (502)
                      +.||+|++||++++..+....+|...|++++|+|++ .+|++|+.||+|++||++ .........+       ...+.++
T Consensus       169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred             ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence            999999999999998777777789999999999998 899999999999999998 3322211111       2378999


Q ss_pred             EeCCCCCCEEEEEeCCC------eEEEEECCCC
Q 010769          359 AWDPHAEHSFVVSLEDG------TIKGFDIRTA  385 (502)
Q Consensus       359 ~~~p~~~~~l~~~~~dg------~i~i~d~~~~  385 (502)
                      +|++++..+++.+..+|      .+++|++++.
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            99986543333344443      3899999875

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=1.9e-20  Score=199.63  Aligned_cols=296  Identities=13%  Similarity=0.074  Sum_probs=195.8

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..|.+++|+|+ +.++++. ++     .||+|+....   .+....  .....+.++.|       ||+|++||++ .++
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~-----~i~~~d~~~~---~~~~l~--~~~~~~~~~~~-------SpdG~~la~~-~~~  141 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QG-----GLVGFDMLAR---KVTYLF--DTNEETASLDF-------SPVGDRVAYV-RNH  141 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TT-----EEEEEETTTT---EEEEEE--CCTTCCTTCEE-------CTTSSEEEEE-ETT
T ss_pred             cCceeEEECCC-CeEEEEE-CC-----EEEEEECCCC---ceEEcc--CCcccccCCcC-------CCCCCEEEEE-ECC
Confidence            46899999999 6666654 34     6666665544   221111  01222345555       8999999995 679


Q ss_pred             cEEEeeCCC-----CCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe--------
Q 010769          220 AIEIWDLDV-----IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS--------  286 (502)
Q Consensus       220 ~I~iwdl~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs--------  286 (502)
                      .|++|++..     +..... ...+. .          ....... ....+...+.+++|+|++ .+|++++        
T Consensus       142 ~i~v~~~~~~~~~~g~~~~~-~~~~~-~----------~~~~g~~-~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~  207 (706)
T 2z3z_A          142 NLYIARGGKLGEGMSRAIAV-TIDGT-E----------TLVYGQA-VHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKP  207 (706)
T ss_dssp             EEEEEECBCTTSCCCCCEES-CSCCB-T----------TEEESSC-CGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCC
T ss_pred             eEEEEecCcccccCCCcEEe-ccCCC-C----------CeEcccc-hhhhhcCCCceEEECCCC-CEEEEEEECCCCCce
Confidence            999999975     332110 00000 0          0000000 111223446899999994 5777776        


Q ss_pred             -------------------------cCCcEEEEECCCCeeeEEec--cCCCCeEEEEEcCCCCcEEEEEECCC-----cE
Q 010769          287 -------------------------ADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDR-----SV  334 (502)
Q Consensus       287 -------------------------~Dg~v~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i  334 (502)
                                               .+..|++||+.+++......  .|...+.+++|+|++ +.|++++.++     .|
T Consensus       208 ~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v  286 (706)
T 2z3z_A          208 TPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKV  286 (706)
T ss_dssp             EEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEE
T ss_pred             EEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEE
Confidence                                     44679999999988655442  467789999999999 7777777665     89


Q ss_pred             EEEeCCCCCCccceEee--cC---CeEEEEeCC--CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769          335 VMKDARISTHSGFKWAV--AA---DVESLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV  407 (502)
Q Consensus       335 ~vwd~~~~~~~~~~~~~--~~---~v~~v~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v  407 (502)
                      ++||+.++.........  ..   .+.+++|+|  ++. +++++..+|.+++|.+...        ...+..+..|...+
T Consensus       287 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~--------~~~~~~l~~~~~~v  357 (706)
T 2z3z_A          287 NAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTT--------GRLIRQVTKGEWEV  357 (706)
T ss_dssp             EEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETT--------SCEEEECCCSSSCE
T ss_pred             EEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECC--------CCEEEecCCCCeEE
Confidence            99999887333222221  21   246789999  876 7888888999999988632        25566677777778


Q ss_pred             eE-EEEcCCCCCEEEEEeCCC----cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC---CcEEEEEC
Q 010769          408 CT-ISYNPLVPNLLATGSTDK----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDT  479 (502)
Q Consensus       408 ~~-l~~sp~~~~~l~t~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d---g~i~vwd~  479 (502)
                      .. ++|+|++..++++++.++    .|..||+.++...   .+ .+...+.+++|+|++++++++++..   +.|++||+
T Consensus       358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~---~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK---DL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE---ES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce---ec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            77 799999844445555555    6777788776532   22 2556799999999999755554544   56999999


Q ss_pred             CCCc
Q 010769          480 LSDA  483 (502)
Q Consensus       480 ~~~~  483 (502)
                      .+++
T Consensus       434 ~~~~  437 (706)
T 2z3z_A          434 GKGS  437 (706)
T ss_dssp             SSCE
T ss_pred             CCCe
Confidence            8876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=3.9e-21  Score=181.12  Aligned_cols=228  Identities=10%  Similarity=0.031  Sum_probs=167.2

Q ss_pred             EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769          214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v  293 (502)
                      .++.++.|++||+.....                            ..+..|...|.+++|+|+ +.+|++++ ++.|++
T Consensus        17 ~~~~~~~i~~~d~~~~~~----------------------------~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~   66 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM----------------------------RVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYR   66 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE----------------------------EEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEE
T ss_pred             CCCcceeEEEEeCCCCce----------------------------eeeccCCcceEeeEECCC-CCEEEEEc-CCeEEE
Confidence            456789999999874221                            122357889999999999 55787776 789999


Q ss_pred             EECCC-CeeeEEeccC-CCCeEEEEEcCCCCcEEEEEE--CCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEE
Q 010769          294 WDVAA-GKCNLTLEHH-TDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       294 wd~~~-~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  369 (502)
                      ||+.+ ++....+..+ ...+.+++|+|++ ++|++++  .++.+.||.+...............+.+++|+|++..+++
T Consensus        67 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  145 (297)
T 2ojh_A           67 LSLAGDPSPEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTY  145 (297)
T ss_dssp             EESSSCCSCEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEE
T ss_pred             EeCCCCCCceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEE
Confidence            99999 8777666555 4788999999999 7888888  3345555555332222223334445889999999886666


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECC-CCCeeEEEEecC
Q 010769          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLS-NNQPSCIASRNP  447 (502)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~-~~~~~~~~~~~~  447 (502)
                      ++..++.+++|++...        ......+..|...+.+++|+|++ .+|++++ .++.+++|++. ...  ....+..
T Consensus       146 ~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~--~~~~~~~  214 (297)
T 2ojh_A          146 CGIRDQVFDIYSMDID--------SGVETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGS--SVERITD  214 (297)
T ss_dssp             EEEETTEEEEEEEETT--------TCCEEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS--CEEECCC
T ss_pred             EECCCCceEEEEEECC--------CCcceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCC--CcEEEec
Confidence            8888999999997543        23445667788899999999998 6555544 68999999886 333  3455666


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCC-----------CcEEEEECCCCcc
Q 010769          448 KAGAVFSVAFSEDSPFVLAIGGSK-----------GKLEIWDTLSDAG  484 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~llasg~~d-----------g~i~vwd~~~~~~  484 (502)
                      +...+.+++|+|++++ |++++.+           +.|++||+.+++.
T Consensus       215 ~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          215 SAYGDWFPHPSPSGDK-VVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             CSEEEEEEEECTTSSE-EEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             CCcccCCeEECCCCCE-EEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            7778999999999996 5555544           5699999988765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=5.7e-20  Score=179.43  Aligned_cols=294  Identities=10%  Similarity=0.121  Sum_probs=185.1

Q ss_pred             cccCCCceEEEEEecC-CcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC----Cc
Q 010769          146 TINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME----PA  220 (502)
Q Consensus       146 ~~~p~~~~l~~~~~~~-~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d----g~  220 (502)
                      ...+...++++|+... ....+.+|.++...+   .+...... ....|..++|       +|+|++|++++.+    +.
T Consensus         8 ~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g---~~~~~~~~-~~~~p~~l~~-------spdg~~l~~~~~~~~~~~~   76 (361)
T 3scy_A            8 STTDSELTMLVGTYTSGNSKGIYTFRFNEETG---ESLPLSDA-EVANPSYLIP-------SADGKFVYSVNEFSKDQAA   76 (361)
T ss_dssp             CGGGGEEEEEEEECCSSSCCEEEEEEEETTTC---CEEEEEEE-ECSCCCSEEE-------CTTSSEEEEEECCSSTTCE
T ss_pred             hhCCCceEEEEEeccCCCCCCEEEEEEeCCCC---CEEEeecc-cCCCCceEEE-------CCCCCEEEEEEccCCCCCc
Confidence            3445556677775432 234677888876655   33332222 3344556666       8999999998875    79


Q ss_pred             EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe
Q 010769          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~  300 (502)
                      |.+|+++.....                       .........+......+++  +++.++++...+++|.+|++....
T Consensus        77 v~~~~~~~~~g~-----------------------~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g  131 (361)
T 3scy_A           77 VSAFAFDKEKGT-----------------------LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDG  131 (361)
T ss_dssp             EEEEEEETTTTE-----------------------EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTS
T ss_pred             EEEEEEeCCCCc-----------------------EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCC
Confidence            999998642110                       0111111224456777888  534344444468899999997543


Q ss_pred             eeEEe------cc--------CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC------c-------cceEeecC
Q 010769          301 CNLTL------EH--------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------S-------GFKWAVAA  353 (502)
Q Consensus       301 ~~~~~------~~--------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~-------~~~~~~~~  353 (502)
                      .+..+      .+        +...+.+++|+|++..+++++..++.|.+|++.....      .       ........
T Consensus       132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  211 (361)
T 3scy_A          132 ALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGS  211 (361)
T ss_dssp             CBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTC
T ss_pred             cCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCC
Confidence            32211      11        1234688999999933455555689999999876542      1       11122345


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe---cCCCCeeEEEEcCCCCCEEEEEeC--CCc
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGST--DKM  428 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~t~s~--dg~  428 (502)
                      .+..++|+|++..+++++..++.|.+|++.++.       ...+..+.   .+......++|+|++ ++|+++..  ++.
T Consensus       212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~-------~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~  283 (361)
T 3scy_A          212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM-------LDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADG  283 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTCEEEEEEEETTE-------EEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCE
T ss_pred             CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc-------eEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCCE
Confidence            678999999987444445479999999998541       12222232   233456899999998 66655554  589


Q ss_pred             EEEEECC--CCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCcc
Q 010769          429 VKLWDLS--NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT--LSDAG  484 (502)
Q Consensus       429 i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~--~~~~~  484 (502)
                      |.+|++.  +++...+..... ...+.+++|+|+|+++++++..++.|.+|.+  .+++.
T Consensus       284 i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          284 VAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             EEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence            9999996  455444444444 4567899999999975555557789999655  45544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=5e-20  Score=177.79  Aligned_cols=278  Identities=10%  Similarity=0.089  Sum_probs=178.6

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      +...+..++|+|++++|++++.++  ..+.+|.++...+   .+...........|.++.|       +|++++|++++.
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~--~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------s~dg~~l~~~~~  103 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPE--FRVLAYRIAPDDG---ALTFAAESALPGSLTHIST-------DHQGQFVFVGSY  103 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTT--TEEEEEEECTTTC---CEEEEEEEECSSCCSEEEE-------CTTSSEEEEEET
T ss_pred             cCCCCceEEECCCCCEEEEeecCC--CeEEEEEecCCCC---ceeeccccccCCCCcEEEE-------cCCCCEEEEEec
Confidence            345688899999999998888763  3667777763333   3332222333445667777       799998876654


Q ss_pred             -CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe-cCCcEEEEE
Q 010769          218 -EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWD  295 (502)
Q Consensus       218 -dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs-~Dg~v~vwd  295 (502)
                       ++.|.+|++..+..                        ........ ....+.+++|+|++. +|++++ .++.|++||
T Consensus       104 ~~~~i~~~d~~~~~~------------------------~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d  157 (343)
T 1ri6_A          104 NAGNVSVTRLEDGLP------------------------VGVVDVVE-GLDGCHSANISPDNR-TLWVPALKQDRICLFT  157 (343)
T ss_dssp             TTTEEEEEEEETTEE------------------------EEEEEEEC-CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEE
T ss_pred             CCCeEEEEECCCCcc------------------------cccccccc-CCCCceEEEECCCCC-EEEEecCCCCEEEEEE
Confidence             78999999841110                        01111111 234588999999955 555555 899999999


Q ss_pred             CCC-CeeeE----Eecc-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC--CCCccceE-e-e------cCCeEEEE
Q 010769          296 VAA-GKCNL----TLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--STHSGFKW-A-V------AADVESLA  359 (502)
Q Consensus       296 ~~~-~~~~~----~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~-~-~------~~~v~~v~  359 (502)
                      +.+ ++...    .+.. ....+.+++|+|++..+++++..++.|.+|++..  +....... . .      ...+..++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  237 (343)
T 1ri6_A          158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  237 (343)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence            987 65432    2222 3457889999999943445555899999999964  22211111 1 1      12466899


Q ss_pred             eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEE--ECCC
Q 010769          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLW--DLSN  436 (502)
Q Consensus       360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vw--d~~~  436 (502)
                      |+|++..+++++..++.|.+|++......     ...+..+..+.. +.+++|+|++ ++|++++ .++.|.+|  |..+
T Consensus       238 ~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-----~~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          238 ITPDGRHLYACDRTASLITVFSVSEDGSV-----LSKEGFQPTETQ-PRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQ  310 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCC-----EEEEEEEECSSS-CCCEEECTTS-SEEEEECTTTCEEEEEEEETTT
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEcCCCCc-----eEEeeeecCCCc-cceEEECCCC-CEEEEecCCCCeEEEEEEcCCC
Confidence            99998755556668999999999842100     133444444444 8999999998 6666665 68999999  4446


Q ss_pred             CCeeEEEEecCCCCCEEEEEEcCCC
Q 010769          437 NQPSCIASRNPKAGAVFSVAFSEDS  461 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~  461 (502)
                      ++...+..+... ....+++|.|+.
T Consensus       311 g~~~~~~~~~~g-~~p~~i~~~~~~  334 (343)
T 1ri6_A          311 GLLHEKGRYAVG-QGPMWVVVNAHE  334 (343)
T ss_dssp             TEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred             ceeeEccccccC-CCCeeEEEEccc
Confidence            654444444432 335566666543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=1.8e-20  Score=180.48  Aligned_cols=238  Identities=10%  Similarity=0.076  Sum_probs=173.7

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+..+++++.++.|++||+.++.....                           ...+...+ +++|+|++..+++++..
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~---------------------------~~~~~~~~-~~~~s~dg~~l~~~~~~   60 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQ---------------------------ITLGYDFV-DTAITSDCSNVVVTSDF   60 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEE---------------------------EECCCCEE-EEEECSSSCEEEEEEST
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeee---------------------------EEccCCcc-eEEEcCCCCEEEEEeCC
Confidence            355578888899999999976432211                           11234455 99999996545555555


Q ss_pred             CCcEEEEECCCCee-eEEeccCCCCeEEEEEcCCCCcEEEEEECCC---cEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769          288 DKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDR---SVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       288 Dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  363 (502)
                      ++.|.+||+.+++. ...+..+..+..+++|+|++ ++|+++..++   .|.+||+.+.+... .........+++|+|+
T Consensus        61 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~spd  138 (331)
T 3u4y_A           61 CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFIS-TIPIPYDAVGIAISPN  138 (331)
T ss_dssp             TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEE-EEECCTTEEEEEECTT
T ss_pred             CCeEEEEECCCCceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEE-EEECCCCccceEECCC
Confidence            89999999999987 77777676666669999999 6677555543   89999998876544 3455667899999999


Q ss_pred             CCCEEEEEeCCCe-EEEEECCCCCCCCCCCCCCcc---EEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          364 AEHSFVVSLEDGT-IKGFDIRTAKSDPDSTSQQSS---FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       364 ~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~---~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      +..+++++..++. |.+|++....        ...   .....+...+.+++|+|++..+++++..++.|++||+.+++.
T Consensus       139 g~~l~~~~~~~~~~i~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          139 GNGLILIDRSSANTVRRFKIDADG--------VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             SSCEEEEEETTTTEEEEEEECTTC--------CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             CCEEEEEecCCCceEEEEEECCCC--------cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            8877777777788 9999998541        111   222234556899999999844556666789999999998874


Q ss_pred             -eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          440 -SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       440 -~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                       ..+..+.. ...+..++|+|+|++++++...++.|.+||+.+++.
T Consensus       211 ~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          211 ITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             CEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             cceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence             11333433 356788999999997666666678899999998876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=8e-21  Score=203.02  Aligned_cols=290  Identities=9%  Similarity=0.017  Sum_probs=187.0

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC--
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME--  218 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d--  218 (502)
                      .+.+++|+|+|+++++ +.++     .|++|+...+....+..+|... ...+.+++|       ||+|++||+++.+  
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg-----~i~~~d~~~g~~~~~~~~~~~~-~~~v~~~~~-------SpDg~~l~~~~~~~~   83 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKG-----TVRLWNVETNTSTVLIEGKKIE-SLRAIRYEI-------SPDREYALFSYNVEP   83 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSS-----CEEEBCGGGCCCEEEECTTTTT-TTTCSEEEE-------CTTSSEEEEEESCCC
T ss_pred             cccccEEcCCCcEEEE-eCCC-----CEEEEECCCCcEEEEecccccc-ccccceEEE-------CCCCCEEEEEecCcc
Confidence            4678999999997765 4444     4555555444222333333211 001345555       8999999999764  


Q ss_pred             -------CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769          219 -------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       219 -------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v  291 (502)
                             +.|.+||+.++.. .                        ......+|...+.+++|+|++ +.||+++. +.|
T Consensus        84 ~~~~~~~~~i~~~d~~~~~~-~------------------------~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i  136 (723)
T 1xfd_A           84 IYQHSYTGYYVLSKIPHGDP-Q------------------------SLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNI  136 (723)
T ss_dssp             CSSSCCCSEEEEEESSSCCC-E------------------------ECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEE
T ss_pred             ceeecceeeEEEEECCCCce-E------------------------eccCCccccccccccEECCCC-CEEEEEEC-CeE
Confidence                   7788999976432 0                        011123566679999999994 57777776 799


Q ss_pred             EEEECCCCeeeEEeccCCCCe------------------EEEEEcCCCCcEEEEEECCC---------------------
Q 010769          292 KIWDVAAGKCNLTLEHHTDKV------------------QAVAWNHHSPQILLSGSFDR---------------------  332 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v------------------~~l~~~~~~~~~l~s~~~dg---------------------  332 (502)
                      ++|++.+++.......+...+                  .+++|+|+| +.|++++.++                     
T Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (723)
T 1xfd_A          137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKP  215 (723)
T ss_dssp             EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred             EEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCccee
Confidence            999999988776665444333                  789999999 7777776543                     


Q ss_pred             -------------cEEEEeCCCCCCccceEee------cCCeEEEEeCCCCCCEEEEEeC----CCeEEEEECCCCCCCC
Q 010769          333 -------------SVVMKDARISTHSGFKWAV------AADVESLAWDPHAEHSFVVSLE----DGTIKGFDIRTAKSDP  389 (502)
Q Consensus       333 -------------~i~vwd~~~~~~~~~~~~~------~~~v~~v~~~p~~~~~l~~~~~----dg~i~i~d~~~~~~~~  389 (502)
                                   .|++||+.++........+      ...+.+++|+|++. ++++...    +..|++||+.++    
T Consensus       216 ~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g----  290 (723)
T 1xfd_A          216 YHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTG----  290 (723)
T ss_dssp             EECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTC----
T ss_pred             ccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCC----
Confidence                         7999999877643222222      45688999999986 5544432    357999999876    


Q ss_pred             CCCCCCccEEEe-cCCCCe----eEEEEcCCCCCEEEE-EeCCC------cEEEEE-CCCCCeeEEEEecCCCCCEEE-E
Q 010769          390 DSTSQQSSFTLH-AHDKAV----CTISYNPLVPNLLAT-GSTDK------MVKLWD-LSNNQPSCIASRNPKAGAVFS-V  455 (502)
Q Consensus       390 ~~~~~~~~~~~~-~h~~~v----~~l~~sp~~~~~l~t-~s~dg------~i~vwd-~~~~~~~~~~~~~~~~~~v~~-~  455 (502)
                           .....+. .+...+    ..++|+|+|..++++ +..++      .|.+|| ...+...+...+..+...+.. +
T Consensus       291 -----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~  365 (723)
T 1xfd_A          291 -----VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL  365 (723)
T ss_dssp             -----CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE
T ss_pred             -----cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeee
Confidence                 3333333 234444    378999999555554 55677      577777 344431012223333344554 6


Q ss_pred             EEcCCCCcEEEEEeCC--CcEEEEECCCC
Q 010769          456 AFSEDSPFVLAIGGSK--GKLEIWDTLSD  482 (502)
Q Consensus       456 ~~spd~~~llasg~~d--g~i~vwd~~~~  482 (502)
                      +|+|+++++++++..+  +.++||++...
T Consensus       366 ~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          366 AYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             EEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             EEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            9999999755555555  78999998653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=2.1e-20  Score=180.00  Aligned_cols=278  Identities=15%  Similarity=0.157  Sum_probs=188.2

Q ss_pred             ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCC---CcceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCC
Q 010769          152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA---FPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLD  227 (502)
Q Consensus       152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~w~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~  227 (502)
                      ++|++++.++     .|++|+....   .+.  ....++.   .|.++.|       +|+++++ ++++.++.|.+||+.
T Consensus         2 ~~~v~~~~~~-----~v~~~d~~~~---~~~--~~~~~~~~~~~~~~~~~-------s~dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            2 DYILAPARPD-----KLVVIDTEKM---AVD--KVITIADAGPTPMVPMV-------APGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEEETTT-----EEEEEETTTT---EEE--EEEECTTCTTCCCCEEE-------CTTSSEEEEEETTTTEEEEEETT
T ss_pred             cEEEEcCCCC-----eEEEEECCCC---cEE--EEEEcCCCCCCccceEE-------cCCCCEEEEEeCCCCeEEEEECC
Confidence            4677887776     6666665543   221  1122233   3566666       7898765 556667899999997


Q ss_pred             CCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe------------cCCcEEEEE
Q 010769          228 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS------------ADKQVKIWD  295 (502)
Q Consensus       228 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs------------~Dg~v~vwd  295 (502)
                      +......... +                     ....|...+.+++|+|++ .+|++++            .++.|.+||
T Consensus        65 ~~~~~~~~~~-~---------------------~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d  121 (337)
T 1pby_B           65 TGETLGRIDL-S---------------------TPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYD  121 (337)
T ss_dssp             TCCEEEEEEC-C---------------------BTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred             CCCeEeeEEc-C---------------------CcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEE
Confidence            6432211100 0                     000133467899999995 4666665            579999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      +.+++.+..+.. ...+.+++|+|++ ++|+++  ++.|.+||+.+.+.... .........+.|+|++..+++++..++
T Consensus       122 ~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~  196 (337)
T 1pby_B          122 AETLSRRKAFEA-PRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLVED-KPIQSWEAETYAQPDVLAVWNQHESSG  196 (337)
T ss_dssp             TTTTEEEEEEEC-CSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEEEE-ECSTTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred             CCCCcEEEEEeC-CCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcEeee-eeccccCCCceeCCCccEEeeeccCCC
Confidence            999988877764 4568889999999 656666  68999999987764432 222221123478888775444443333


Q ss_pred             -----------------------eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          376 -----------------------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       376 -----------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                                             .|.+||+.+..        .....+..+...+.+++|+|++ ++|+++  ++.|++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~  265 (337)
T 1pby_B          197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--------MAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESF  265 (337)
T ss_dssp             EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--------EEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEE
T ss_pred             ceeeeeeccccccccccccccccceEEEeCCCCC--------ceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEE
Confidence                                   46899998762        2234455677788999999998 777777  6899999


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |+.+++..  ..+.. ...+.+++|+|++++ |++++.++.|++||+.+++.+..+-
T Consensus       266 d~~~~~~~--~~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          266 DLEKNASI--KRVPL-PHSYYSVNVSTDGST-VWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             ETTTTEEE--EEEEC-SSCCCEEEECTTSCE-EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ECCCCcCc--ceecC-CCceeeEEECCCCCE-EEEEcCCCcEEEEECcCCcEEEEEE
Confidence            99988743  33332 245789999999996 5566889999999999998776553

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=4.4e-21  Score=191.80  Aligned_cols=250  Identities=15%  Similarity=0.169  Sum_probs=168.5

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE--
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA--  283 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~--  283 (502)
                      ++++.+|++|+.++ |+||+.........   .+..         ..............|...|++++|+|++ ++|+  
T Consensus        45 s~~~~~l~~~~~dg-v~v~~~~~~~~~~~---~~~~---------~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~lav~  110 (434)
T 2oit_A           45 SNKYGLVFAGGASG-LQIFPTKNLLIQNK---PGDD---------PNKIVDKVQGLLVPMKFPIHHLALSCDN-LTLSAC  110 (434)
T ss_dssp             ETTTTEEEEEETTE-EEEEEHHHHCCCCC---TTCC---------TTCEEECCCCEEECCSSCEEEEEECTTS-CEEEEE
T ss_pred             ecCCCEEEEECCCE-EEEEEchHhhhhcc---cccC---------cccccccCccccccCCCcccEEEEcCCC-CEEEEE
Confidence            67889999999888 88987642111000   0000         0000000000112467789999999994 5777  


Q ss_pred             --EEecCCcEEEEECCCC--------e---eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe
Q 010769          284 --SASADKQVKIWDVAAG--------K---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       284 --sgs~Dg~v~vwd~~~~--------~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  350 (502)
                        +|+.|++|+|||+.++        +   .+..+.+|...|.+++|+|+++.+|++++.||+|++||+++.........
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~  190 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP  190 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC
Confidence              7889999999998754        2   24556779999999999998558999999999999999998755444455


Q ss_pred             ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-------CCCCeeEEEEcCCCCCEEEE-
Q 010769          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-------HDKAVCTISYNPLVPNLLAT-  422 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~~l~t-  422 (502)
                      |...|.+++|+|++. +|++|+.||.|++||++ +         .....+..       |...|.+++|++++ .++++ 
T Consensus       191 ~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~---------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~  258 (434)
T 2oit_A          191 STVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-L---------QEKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVY  258 (434)
T ss_dssp             GGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-C---------CEEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEE
T ss_pred             CCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-C---------cccccccCCcccCCCCceeEEEEEEecCc-eEEEEE
Confidence            778999999999865 79999999999999998 3         22233332       33489999999976 55443 


Q ss_pred             EeCCCc------EEEEECCCCC---eeEEEEec-------CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          423 GSTDKM------VKLWDLSNNQ---PSCIASRN-------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       423 ~s~dg~------i~vwd~~~~~---~~~~~~~~-------~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ++.+|.      +++|+++...   +.....+.       ....+-..+.+.++...++++++..+.|.|.....
T Consensus       259 ~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          259 AAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             EETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             ccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence            444533      8999998652   11222211       22223334445577776667666667777777543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=2.3e-20  Score=181.08  Aligned_cols=240  Identities=13%  Similarity=0.085  Sum_probs=177.5

Q ss_pred             CCCCCEEEEecC-------CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC
Q 010769          206 REKGNFMAVGSM-------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF  278 (502)
Q Consensus       206 s~~~~~la~g~~-------dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  278 (502)
                      +|++++|++++.       ++.|.+||+.+.......                            .....+.+++|+|++
T Consensus        49 s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~----------------------------~~~~~~~~~~~s~dg  100 (353)
T 3vgz_A           49 SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI----------------------------HNDLKPFGATINNTT  100 (353)
T ss_dssp             ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE----------------------------EESSCCCSEEEETTT
T ss_pred             CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE----------------------------ecCCCcceEEECCCC
Confidence            789988888774       468999998754322111                            122347889999996


Q ss_pred             CcEEEEEecCCcEEEEECCCCeeeEEeccCCCC---------eEEEEEcCCCCcEEEEEE--CCCcEEEEeCCCCCCccc
Q 010769          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDK---------VQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGF  347 (502)
Q Consensus       279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~---------v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~  347 (502)
                      ..+++++..++.|.+||+.+++.+..+..+...         +.++.|+|++ ..+++++  .++.|.+||+.+.+....
T Consensus       101 ~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~~~~~  179 (353)
T 3vgz_A          101 QTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIKLKTA  179 (353)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             CEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCceEEE
Confidence            656677777899999999999988888654432         7899999999 5455444  478999999988765543


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec----CCCCeeEEEEcCCCCCEEEEE
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----HDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .......+.+++|+|++. .++++..++.|.+||+.+.         .....+..    +...+.+++|+|++..++++.
T Consensus       180 ~~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  249 (353)
T 3vgz_A          180 IQNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADN---------KILSRKKLLDDGKEHFFINISLDTARQRAFITD  249 (353)
T ss_dssp             ECCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTT---------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ecCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCC---------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence            222455688999999876 6788888999999999876         45555543    455688899999984444555


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..++.|.+||+.+++.......  ..  ...++|+|++++++++...++.|.+||+.+++.+...
T Consensus       250 ~~~~~v~~~d~~~~~~~~~~~~--~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          250 SKAAEVLVVDTRNGNILAKVAA--PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF  310 (353)
T ss_dssp             SSSSEEEEEETTTCCEEEEEEC--SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEEEc--CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            5569999999998875333332  22  2568999999976777767899999999988876543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=4e-20  Score=198.17  Aligned_cols=289  Identities=12%  Similarity=0.121  Sum_probs=195.2

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCC---CCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG---GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      ..|.+++|+|+|++|++++. +     .||+|+....   ....+..|     ...+.++.|       ||+|++||+++
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~-----~i~~~d~~~~~~~~~~~l~~~-----~~~~~~~~~-------SPDG~~la~~~  170 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-G-----ELYLYDLKQEGKAAVRQLTHG-----EGFATDAKL-------SPKGGFVSFIR  170 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-T-----EEEEEESSSCSTTSCCBCCCS-----SSCEEEEEE-------CTTSSEEEEEE
T ss_pred             cCcceeEECCCCCEEEEEeC-C-----cEEEEECCCCCcceEEEcccC-----CcccccccC-------CCCCCEEEEEe
Confidence            45899999999999999886 3     6666665443   22222222     122355666       89999999987


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCc--------ccceeeEEecCCCCcEEEEEecC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH--------TDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h--------~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                       ++.|++|++..+.....   ...             . ..  ....++        ...+.+++|+|++ .+|++++.|
T Consensus       171 -~~~i~~~d~~~g~~~~~---~~~-------------~-~~--~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d  229 (741)
T 2ecf_A          171 -GRNLWVIDLASGRQMQL---TAD-------------G-ST--TIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARID  229 (741)
T ss_dssp             -TTEEEEEETTTTEEEEC---CCC-------------C-CS--SEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEE
T ss_pred             -CCcEEEEecCCCCEEEe---ccC-------------C-cc--ceeccccceeeeeccccccceEECCCC-CEEEEEEEc
Confidence             46999999975322110   000             0 00  000011        1235889999995 577777766


Q ss_pred             C---------------------------------cEEEEECCC-CeeeEEec--cCCCCeEEEEEcCCCCcEEEEEEC--
Q 010769          289 K---------------------------------QVKIWDVAA-GKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSF--  330 (502)
Q Consensus       289 g---------------------------------~v~vwd~~~-~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~--  330 (502)
                      +                                 .|++||+.+ ++......  .|...+.+++| |+| +.|++++.  
T Consensus       230 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~  307 (741)
T 2ecf_A          230 ESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSR  307 (741)
T ss_dssp             CTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEET
T ss_pred             CCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecc
Confidence            5                                 889999988 87654443  47788999999 999 66665543  


Q ss_pred             ---CCcEEEEeCCCCCCccceEeecC----CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC
Q 010769          331 ---DRSVVMKDARISTHSGFKWAVAA----DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH  403 (502)
Q Consensus       331 ---dg~i~vwd~~~~~~~~~~~~~~~----~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h  403 (502)
                         +..|++||+.++........+..    .+..++|+|++. +++++..+|.+++|.+...        .. ...+..|
T Consensus       308 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~--------~~-~~~l~~~  377 (741)
T 2ecf_A          308 DQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSK--------GK-AAALTHG  377 (741)
T ss_dssp             TSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSS--------SC-EEESCCS
T ss_pred             cCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCC--------CC-eeeeeec
Confidence               56799999998776543333332    346899999987 8888899998888877633        24 6667778


Q ss_pred             CCCeeEE-EEcCCCCCEEEEEeCCC--cEEEEECCC-CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC---CcEEE
Q 010769          404 DKAVCTI-SYNPLVPNLLATGSTDK--MVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEI  476 (502)
Q Consensus       404 ~~~v~~l-~~sp~~~~~l~t~s~dg--~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d---g~i~v  476 (502)
                      ...+..+ .|+|++..++++++.++  .++||++.. +.  ....+.. ...+.+++|+|++++++++++..   ..+.+
T Consensus       378 ~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~--~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l  454 (741)
T 2ecf_A          378 NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG--QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIEL  454 (741)
T ss_dssp             SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC--CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC--Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEE
Confidence            8888887 59999844555666665  899998864 32  2233333 56688999999999765555543   46889


Q ss_pred             EECCCC
Q 010769          477 WDTLSD  482 (502)
Q Consensus       477 wd~~~~  482 (502)
                      |+...+
T Consensus       455 ~~~~~~  460 (741)
T 2ecf_A          455 FRANGE  460 (741)
T ss_dssp             EETTSC
T ss_pred             EEcCCC
Confidence            987543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=5.7e-20  Score=204.16  Aligned_cols=290  Identities=12%  Similarity=0.093  Sum_probs=210.8

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|...+.++.|+|+ .+++++..++   ...||.++........+. +|.    . ..+..|       +|+|++||++.
T Consensus       201 ~~~~~v~~~~~s~d-~l~~~~~~dg---~~~l~~~~~~g~~~~~l~-~~~----~-~~~~~~-------SpDG~~la~~~  263 (1045)
T 1k32_A          201 DMSTHVSSPVIVGH-RIYFITDIDG---FGQIYSTDLDGKDLRKHT-SFT----D-YYPRHL-------NTDGRRILFSK  263 (1045)
T ss_dssp             CCSSCCEEEEEETT-EEEEEECTTS---SCEEEEEETTSCSCEECC-CCC----S-SCEEEE-------EESSSCEEEEE
T ss_pred             CCCCcccceEEeCC-EEEEEEeccC---ceEEEEEeCCCCcceEec-CCC----C-cceeeE-------cCCCCEEEEEe
Confidence            46778899999988 5555554443   568999886443211222 221    1 123344       78999999984


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec-CCCCcEEEEEecCCcEEEEE
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILASASADKQVKIWD  295 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~sgs~Dg~v~vwd  295 (502)
                       ++.|.+|++... .+   ..+...             ..........|...|.+++|+ |+ +..|++++ ++.|.+|+
T Consensus       264 -~~~i~~~d~~~~-~l---~~l~~~-------------~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~  323 (1045)
T 1k32_A          264 -GGSIYIFNPDTE-KI---EKIEIG-------------DLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQD  323 (1045)
T ss_dssp             -TTEEEEECTTTC-CE---EECCCC-------------CCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEEC
T ss_pred             -CCEEEEecCCce-Ee---eeeccC-------------cccccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEc
Confidence             899999998321 11   111100             000011122466789999999 99 45677776 78999999


Q ss_pred             CCCCeeeEEeccCCC-CeEEEEEcCCCCcEEEEEECCCcEE-EEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769          296 VAAGKCNLTLEHHTD-KVQAVAWNHHSPQILLSGSFDRSVV-MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      +..+... .+..|.. .+.+++|+ ++ ..|++++.++.+. +|++......... .+...+.+++|+|++. .+++++.
T Consensus       324 ~~~~~~~-~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~-~la~~~~  398 (1045)
T 1k32_A          324 VSGTYVL-KVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGK-FAVVAND  398 (1045)
T ss_dssp             TTSSBEE-ECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSS-EEEEEET
T ss_pred             CCCCceE-EccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCC-EEEEECC
Confidence            9887654 4666777 89999999 87 7888888888888 8998876544433 5667899999999876 7888899


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC----------cEEEEECCCCCeeEEE
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----------MVKLWDLSNNQPSCIA  443 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg----------~i~vwd~~~~~~~~~~  443 (502)
                      ++.|++||+.++         ........|...+.+++|+|+| ++|++++.++          .|++||+.+++   ..
T Consensus       399 ~~~v~~~d~~tg---------~~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~  465 (1045)
T 1k32_A          399 RFEIMTVDLETG---------KPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IF  465 (1045)
T ss_dssp             TSEEEEEETTTC---------CEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EE
T ss_pred             CCeEEEEECCCC---------ceEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc---EE
Confidence            999999999876         4555556899999999999998 7777776544          89999999875   45


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      .+..|...+.+++|+|+|++ |++++.++...+|+....
T Consensus       466 ~l~~~~~~~~~~~~spdG~~-l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          466 AATTENSHDYAPAFDADSKN-LYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             ECSCSSSBEEEEEECTTSCE-EEEEESCCCCCEECSSSS
T ss_pred             EeeCCCcccCCceEcCCCCE-EEEEecccCCcCcchhcc
Confidence            66677788999999999995 777888888888886543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=1.2e-19  Score=175.70  Aligned_cols=248  Identities=11%  Similarity=0.044  Sum_probs=170.4

Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +++++++.++++++.++.|++||+.+.......                         . .++...+..++|+|++..++
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-------------------------~-~~~~~~~~~~~~s~dg~~~~   58 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSC-------------------------V-MPDKFGPGTAMMAPDNRTAY   58 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEE-------------------------E-CSSCCSSCEEEECTTSSEEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEE-------------------------e-cCCCCCCceeEECCCCCEEE
Confidence            344778999999999999999999753321110                         0 01222578899999965556


Q ss_pred             EEEecCCcEEEEECCCCeeeEEeccCC------CCeEEEEEcCCCCcEEEEEECC------------CcEEEEeCCCCCC
Q 010769          283 ASASADKQVKIWDVAAGKCNLTLEHHT------DKVQAVAWNHHSPQILLSGSFD------------RSVVMKDARISTH  344 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~  344 (502)
                      +++..++.|.+||+.+++.+..+..+.      ..+.+++|+|++ ++|++++.+            +.|.+||+.+++.
T Consensus        59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  137 (349)
T 1jmx_B           59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  137 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence            677788999999999998887775332      237889999999 777777754            8999999987543


Q ss_pred             cc--ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCC-------------------------c-
Q 010769          345 SG--FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ-------------------------S-  396 (502)
Q Consensus       345 ~~--~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------~-  396 (502)
                      ..  ....+...+.+++|+|++. +++ ++  +.|++||+.++..........                         . 
T Consensus       138 ~~~~~~~~~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (349)
T 1jmx_B          138 AKPVRTFPMPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML  213 (349)
T ss_dssp             BCCSEEEECCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred             cceeeeccCCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence            22  2334455688999999886 444 43  349999998763210000000                         0 


Q ss_pred             ---------------------------------cEEEecCCCCeeEEEEcC-CCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769          397 ---------------------------------SFTLHAHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       397 ---------------------------------~~~~~~h~~~v~~l~~sp-~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                                                       ...+..+...+.+++|+| ++ ++|+++  ++.|.+||+.+++... 
T Consensus       214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~~-  289 (349)
T 1jmx_B          214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRKLIK-  289 (349)
T ss_dssp             EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTEEEE-
T ss_pred             eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccCeEEE-
Confidence                                             000001223566788899 88 777777  8899999999887432 


Q ss_pred             EEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                       .+.. ...+.+++|+|++++ |++++.++.|++||+.+++.+.++
T Consensus       290 -~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          290 -AANL-DHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             -EEEC-SSCCCEEEECSSSSC-EEEESBSSEEEEEETTTTEEEEEE
T ss_pred             -EEcC-CCCccceEECCCCCE-EEEecCCCeEEEEeccccceeeee
Confidence             3322 234678999999986 555777899999999998877654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=7.9e-20  Score=203.02  Aligned_cols=286  Identities=10%  Similarity=0.010  Sum_probs=202.8

Q ss_pred             cccccccccc-CCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          139 SEDLEDMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       139 ~~~v~~~~~~-p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      ...+.++.|+ |+|+.|++++ .+     .||.++........+..|...    .+.++.       |+ +|+.|++++.
T Consensus       295 ~~~v~~~~~S~pdG~~la~~~-~~-----~i~~~~~~~~~~~~~~~~~~~----~~~~~~-------~s-dg~~l~~~s~  356 (1045)
T 1k32_A          295 IPSKFAEDFSPLDGDLIAFVS-RG-----QAFIQDVSGTYVLKVPEPLRI----RYVRRG-------GD-TKVAFIHGTR  356 (1045)
T ss_dssp             CGGGGEEEEEECGGGCEEEEE-TT-----EEEEECTTSSBEEECSCCSCE----EEEEEC-------SS-SEEEEEEEET
T ss_pred             ccccceeeecCCCCCEEEEEE-cC-----EEEEEcCCCCceEEccCCCcc----eEEeee-------Ec-CCCeEEEEEC
Confidence            4478999999 9999999987 33     677776554311111111110    123334       48 8999999988


Q ss_pred             CCcEE-EeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          218 EPAIE-IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 dg~I~-iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      ++.|. +|++.....                            ..+.+|...+.+++|+|+ +.+|++++.++.|++||+
T Consensus       357 ~~~l~~~~d~~~~~~----------------------------~~l~~~~~~~~~~~~SpD-G~~la~~~~~~~v~~~d~  407 (1045)
T 1k32_A          357 EGDFLGIYDYRTGKA----------------------------EKFEENLGNVFAMGVDRN-GKFAVVANDRFEIMTVDL  407 (1045)
T ss_dssp             TEEEEEEEETTTCCE----------------------------EECCCCCCSEEEEEECTT-SSEEEEEETTSEEEEEET
T ss_pred             CCceEEEEECCCCCc----------------------------eEecCCccceeeeEECCC-CCEEEEECCCCeEEEEEC
Confidence            87888 888764210                            112267788999999999 568999999999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC----------CcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----------RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----------g~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  366 (502)
                      .+++....+..|...+.+++|+|+| ++|++++.+          +.|++||+.++. ......+...+.+++|+|++. 
T Consensus       408 ~tg~~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~-  484 (1045)
T 1k32_A          408 ETGKPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK-  484 (1045)
T ss_dssp             TTCCEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC-
T ss_pred             CCCceEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC-
Confidence            9999888777899999999999999 777776654          489999998765 333445566788899999987 


Q ss_pred             EEEEEeCCCeEEEEECCCCCCC---------------------------------CCCC-CCCccEEEecCCCCeeEEEE
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSD---------------------------------PDST-SQQSSFTLHAHDKAVCTISY  412 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~---------------------------------~~~~-~~~~~~~~~~h~~~v~~l~~  412 (502)
                      .++.++.++....|+.......                                 .... ....+..+..|.+.+..+++
T Consensus       485 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~  564 (1045)
T 1k32_A          485 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP  564 (1045)
T ss_dssp             EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred             EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEE
Confidence            6777777776666765432110                                 0000 01123455567788999999


Q ss_pred             cCCCCCEEEE-------------EeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          413 NPLVPNLLAT-------------GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       413 sp~~~~~l~t-------------~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      +|++ .++++             ......|.+||+.+++...+.      ..+.+++|+|||++ |++++.+ .|++||+
T Consensus       565 s~dg-~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~-l~~~~~~-~i~~~d~  635 (1045)
T 1k32_A          565 LESS-ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKT-VMVRKDD-GKIYTFP  635 (1045)
T ss_dssp             CSSE-EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCE-EEEEETT-SCEEEEE
T ss_pred             cCCC-eEEEEecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCE-EEEEcCC-cEEEEeC
Confidence            9988 66664             123457889999888743322      55889999999996 6666655 8999999


Q ss_pred             CCCc
Q 010769          480 LSDA  483 (502)
Q Consensus       480 ~~~~  483 (502)
                      .+++
T Consensus       636 ~~~~  639 (1045)
T 1k32_A          636 LEKP  639 (1045)
T ss_dssp             SSCT
T ss_pred             ccCc
Confidence            8876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=2.2e-19  Score=191.91  Aligned_cols=306  Identities=13%  Similarity=0.095  Sum_probs=185.7

Q ss_pred             ccccccccCCCceEEEEEecCCcc----eeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVS----HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~----~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|.+++|+|+|++|++++.+....    .-.+|+|+...+....+.. .. .....+.++       +|||+|++||.++
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~-~~~~~~~~~-------~~SPdG~~la~~~  132 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP-PE-VSNAKLQYA-------GWGPKGQQLIFIF  132 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC-TT-CCSCCCSBC-------CBCSSTTCEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC-Cc-ccccccccc-------EECCCCCEEEEEE
Confidence            489999999999999997654221    1256666655441111111 00 001112333       4499999999998


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcc---------cceeeEEecCCCCcEEEEEec
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT---------DSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      . +.|++|++..+....   +...               ......+.++.         ..+.+++|+|++ ..|++++.
T Consensus       133 ~-~~i~~~~~~~g~~~~---~~~~---------------~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~  192 (723)
T 1xfd_A          133 E-NNIYYCAHVGKQAIR---VVST---------------GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAI  192 (723)
T ss_dssp             T-TEEEEESSSSSCCEE---EECC---------------CBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEE
T ss_pred             C-CeEEEEECCCCceEE---EecC---------------CCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEE
Confidence            6 799999997643221   1000               00000001111         234789999995 57777765


Q ss_pred             CC----------------------------------cEEEEECCCCeeeEEeccC------CCCeEEEEEcCCCCcEEEE
Q 010769          288 DK----------------------------------QVKIWDVAAGKCNLTLEHH------TDKVQAVAWNHHSPQILLS  327 (502)
Q Consensus       288 Dg----------------------------------~v~vwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s  327 (502)
                      ++                                  +|++||+.++++...+..+      ...+.+++|+|+| ++|++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~  271 (723)
T 1xfd_A          193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVT  271 (723)
T ss_dssp             ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEE
T ss_pred             CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC-eEEEE
Confidence            43                                  7999999988866666544      5678999999999 67766


Q ss_pred             EEC----CCcEEEEeCCCCCCccceEee-cCCe----EEEEeCCCCCCEEEE-EeCCC------eEEEEEC-CCCCCCCC
Q 010769          328 GSF----DRSVVMKDARISTHSGFKWAV-AADV----ESLAWDPHAEHSFVV-SLEDG------TIKGFDI-RTAKSDPD  390 (502)
Q Consensus       328 ~~~----dg~i~vwd~~~~~~~~~~~~~-~~~v----~~v~~~p~~~~~l~~-~~~dg------~i~i~d~-~~~~~~~~  390 (502)
                      .+.    +..|++||+.+++.......+ ...+    ..++|+|++..++++ +..++      .|.+||+ .....   
T Consensus       272 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~---  348 (723)
T 1xfd_A          272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN---  348 (723)
T ss_dssp             EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS---
T ss_pred             EEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc---
Confidence            543    357999999887755433222 3333    378999999876665 56677      5667773 33210   


Q ss_pred             CCCCCccEEEecCCCCeeE-EEEcCCCCCEEEEEeC-C--CcEEEEECCCCCeeEEEEecC---CCCCEEEEEEcCCCCc
Q 010769          391 STSQQSSFTLHAHDKAVCT-ISYNPLVPNLLATGST-D--KMVKLWDLSNNQPSCIASRNP---KAGAVFSVAFSEDSPF  463 (502)
Q Consensus       391 ~~~~~~~~~~~~h~~~v~~-l~~sp~~~~~l~t~s~-d--g~i~vwd~~~~~~~~~~~~~~---~~~~v~~~~~spd~~~  463 (502)
                          .+...+..+...+.. ++|+|++ +.|+..+. +  +.++||++..........+..   |...+..++|+|++++
T Consensus       349 ----~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~  423 (723)
T 1xfd_A          349 ----DNIQSITSGDWDVTKILAYDEKG-NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDF  423 (723)
T ss_dssp             ----CCCCBSCCSSSCEEEEEEEETTT-TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSE
T ss_pred             ----cceeEeecCCeEEEeeeEEcCCC-CEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCE
Confidence                012333333344544 6999998 66655444 4  789999986532111222222   5567889999999997


Q ss_pred             EEEEEeCCC--cEEEEECCCCcc
Q 010769          464 VLAIGGSKG--KLEIWDTLSDAG  484 (502)
Q Consensus       464 llasg~~dg--~i~vwd~~~~~~  484 (502)
                      ++++.+..+  ...+++..++..
T Consensus       424 l~~~~~~~~~p~~~~~~~~~~~~  446 (723)
T 1xfd_A          424 FLLKCEGPGVPMVTVHNTTDKKK  446 (723)
T ss_dssp             EEEECCSSSSCCEEEEETTTCCE
T ss_pred             EEEEccCCCCCeEEEEECCCCCE
Confidence            665554443  334556544443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=5.2e-19  Score=188.46  Aligned_cols=281  Identities=10%  Similarity=0.088  Sum_probs=185.8

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC--Cceeeeecccc------------CCCcceeeeecCCCCCC
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLYVHHHIII------------PAFPLCMAWLDCPLKDR  206 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~--~~l~~~~~~~~------------~~~~~~~~w~~~~~~~s  206 (502)
                      .+..+.|.  +..++.++.++    +   +|+...+..  ..+..++....            ...+.+++|       |
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~----i---~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~-------s   90 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDD----L---VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD-------A   90 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTE----E---EEEC-------CEEEEHHHHHTTC-----------CCCEEEEE-------T
T ss_pred             cCCCCcCc--CCeEEEEeCCc----E---EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEE-------C
Confidence            46778888  55666665442    4   444444333  34444443210            012345555       8


Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      |+ ++++.+. ++.|++||+.+...                            ..+..+...+.+++|+|++ ..|+++ 
T Consensus        91 pd-~~~~~~~-~~~i~~~d~~~~~~----------------------------~~l~~~~~~~~~~~~SpdG-~~la~~-  138 (706)
T 2z3z_A           91 GR-GLVVLFT-QGGLVGFDMLARKV----------------------------TYLFDTNEETASLDFSPVG-DRVAYV-  138 (706)
T ss_dssp             TT-TEEEEEE-TTEEEEEETTTTEE----------------------------EEEECCTTCCTTCEECTTS-SEEEEE-
T ss_pred             CC-CeEEEEE-CCEEEEEECCCCce----------------------------EEccCCcccccCCcCCCCC-CEEEEE-
Confidence            89 6655553 59999999975321                            1122356678999999995 577774 


Q ss_pred             cCCcEEEEECCC-----CeeeEEeccCCCC--------------eEEEEEcCCCCcEEEEEE------------------
Q 010769          287 ADKQVKIWDVAA-----GKCNLTLEHHTDK--------------VQAVAWNHHSPQILLSGS------------------  329 (502)
Q Consensus       287 ~Dg~v~vwd~~~-----~~~~~~~~~h~~~--------------v~~l~~~~~~~~~l~s~~------------------  329 (502)
                      .++.|++|++.+     ++.......+...              +.++.|+|+| ++|++++                  
T Consensus       139 ~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~  217 (706)
T 2z3z_A          139 RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLE  217 (706)
T ss_dssp             ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSS
T ss_pred             ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCC
Confidence            679999999998     7766544433333              4899999999 7777776                  


Q ss_pred             ---------------CCCcEEEEeCCCCCCccceE--eecCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEECCCCCC
Q 010769          330 ---------------FDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDG-----TIKGFDIRTAKS  387 (502)
Q Consensus       330 ---------------~dg~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~~  387 (502)
                                     .+..|.+||+.++.......  .+...+.+++|+|++. .+++++.++     .|++||+.++  
T Consensus       218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g--  294 (706)
T 2z3z_A          218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETG--  294 (706)
T ss_dssp             CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTC--
T ss_pred             CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCC--
Confidence                           44679999998766433222  2345689999999987 566655554     8999999875  


Q ss_pred             CCCCCCCCccEEEe--cCCC---CeeEEEEcC--CCCCEEEEEeCCCcEEEEECC-CCCeeEEEEecCCCCCEEE-EEEc
Q 010769          388 DPDSTSQQSSFTLH--AHDK---AVCTISYNP--LVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGAVFS-VAFS  458 (502)
Q Consensus       388 ~~~~~~~~~~~~~~--~h~~---~v~~l~~sp--~~~~~l~t~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~-~~~s  458 (502)
                             .....+.  .+..   .+.+++|+|  ++ ++|++++.++.++||.+. ++.  .+..+..+...+.+ ++|+
T Consensus       295 -------~~~~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~--~~~~l~~~~~~v~~~~~~s  364 (706)
T 2z3z_A          295 -------RFVRTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGR--LIRQVTKGEWEVTNFAGFD  364 (706)
T ss_dssp             -------CEEEEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSC--EEEECCCSSSCEEEEEEEC
T ss_pred             -------ceeeEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCC--EEEecCCCCeEEEeeeEEc
Confidence                   1222222  2222   347789999  88 799999999999999876 333  35556667777876 7999


Q ss_pred             CCCCcEEEEEeCCC----cEEEEECCCCc
Q 010769          459 EDSPFVLAIGGSKG----KLEIWDTLSDA  483 (502)
Q Consensus       459 pd~~~llasg~~dg----~i~vwd~~~~~  483 (502)
                      |+++.++++++.++    .|..|++.++.
T Consensus       365 pdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          365 PKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             TTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             CCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            99997666666665    67777777654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=4.4e-19  Score=184.72  Aligned_cols=274  Identities=8%  Similarity=0.009  Sum_probs=187.5

Q ss_pred             ccccccccccCCCceEEEEEe-cCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          139 SEDLEDMTINPNDAVIVCARN-EDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~-~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      ...|.+++|+|+|+.||.++. ++   .++||.++....  ..+..|+...    ...+.       |+|+ +++++++.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g---~~~lw~~~~g~~--~~lt~~~~~~----~~~~~-------~spd-~~l~~~~~   83 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEG---SVNAYLYDGGET--VKLNREPINS----VLDPH-------YGVG-RVILVRDV   83 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETT---EEEEEEEETTEE--EECCSSCCSE----ECEEC-------TTCS-EEEEEEEC
T ss_pred             ccchheeecCCCCCeEEEEEccCC---ceeEEEEcCCCc--Eeeecccccc----ccccc-------CCCC-eEEEEecc
Confidence            446899999999999999887 44   678998754321  1122222111    12334       4888 77777765


Q ss_pred             ---CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          218 ---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       218 ---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                         +...+||.++..+.-.                      ......    ...+...+|+|++..++++.+.++.+.+|
T Consensus        84 ~~g~~~~~l~~~~~~~~g~----------------------~~~l~~----~~~~~~~~~s~dg~~~~~~s~~~~~~~l~  137 (582)
T 3o4h_A           84 SKGAEQHALFKVNTSRPGE----------------------EQRLEA----VKPMRILSGVDTGEAVVFTGATEDRVALY  137 (582)
T ss_dssp             STTSCCEEEEEEETTSTTC----------------------CEECTT----SCSBEEEEEEECSSCEEEEEECSSCEEEE
T ss_pred             CCCCcceEEEEEeccCCCc----------------------cccccC----CCCceeeeeCCCCCeEEEEecCCCCceEE
Confidence               4566777664310000                      000011    11233567888865555555555556699


Q ss_pred             ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC----CcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEE
Q 010769          295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~  370 (502)
                      |+.++++......+.   .+++|+|+| ++|++++.+    +.|++||+.++.... ...+...+..++|+|+|. .+++
T Consensus       138 d~~~g~~~~l~~~~~---~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~~-l~~~~~~~~~~~~SpDG~-~l~~  211 (582)
T 3o4h_A          138 ALDGGGLRELARLPG---FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLRV-FDSGEGSFSSASISPGMK-VTAG  211 (582)
T ss_dssp             EEETTEEEEEEEESS---CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCEE-ECCSSCEEEEEEECTTSC-EEEE
T ss_pred             EccCCcEEEeecCCC---ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCceE-eecCCCccccceECCCCC-EEEE
Confidence            999987765554333   789999999 888877766    789999998877543 445667789999999987 5667


Q ss_pred             EeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEE--------EcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769          371 SLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS--------YNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       371 ~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--------~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      +..+|  .|++||+.++         ... .+..|...+..++        |+|+| .++++++.++.+++|++  ++. 
T Consensus       212 ~~~~~~~~i~~~d~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~-  277 (582)
T 3o4h_A          212 LETAREARLVTVDPRDG---------SVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER-  277 (582)
T ss_dssp             EECSSCEEEEEECTTTC---------CEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE-
T ss_pred             ccCCCeeEEEEEcCCCC---------cEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe-
Confidence            78888  8999999876         333 5667777777777        99999 99999999999999999  542 


Q ss_pred             EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC---cEEEEECCC
Q 010769          441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG---KLEIWDTLS  481 (502)
Q Consensus       441 ~~~~~~~~~~~v~~~~~spd~~~llasg~~dg---~i~vwd~~~  481 (502)
                       ..   ...+.+.+++|+ ++. ++++++.+.   .+.+|+..+
T Consensus       278 -~~---~~~~~v~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          278 -VE---APQGNHGRVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             -EC---CCSSEEEEEEEE-TTE-EEEEEEETTEEEEEEEETTCC
T ss_pred             -ec---cCCCceEEEEec-CCE-EEEEEcCCCCCCeEEEEcCCC
Confidence             21   334678999999 887 466666664   466676653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=1.6e-17  Score=161.06  Aligned_cols=267  Identities=9%  Similarity=0.136  Sum_probs=167.5

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec-CC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS-ME  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~-~d  218 (502)
                      .....++|+|+++ |++++..+....+.+|..+....   .... ........|..++|       +|+|++|++++ .+
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---~~~~-~~~~~~~~p~~~a~-------spdg~~l~~~~~~~  107 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---HKLN-TVVAPGTPPAYVAV-------DEARQLVYSANYHK  107 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---EEEE-EEEEESCCCSEEEE-------ETTTTEEEEEETTT
T ss_pred             CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---EEee-eeecCCCCCEEEEE-------CCCCCEEEEEeCCC
Confidence            4567899999999 55555432223455555533221   1111 11112344566666       79999888887 67


Q ss_pred             CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC-
Q 010769          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA-  297 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~-  297 (502)
                      +.|.+|++...........+..           ..  ....  ...+...+.+++|+|++. +++++..++.|.+|++. 
T Consensus       108 ~~v~v~~~~~~g~~~~~~~~~~-----------~~--~~p~--~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~  171 (347)
T 3hfq_A          108 GTAEVMKIAADGALTLTDTVQH-----------SG--HGPR--PEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSD  171 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEC-----------CC--CCSS--TTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECT
T ss_pred             CEEEEEEeCCCCCeeecceeec-----------CC--CCCC--ccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECC
Confidence            9999999964222211111100           00  0000  112345688999999966 78777788999999998 


Q ss_pred             CCeee--EEecc-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC--CCCccce--Eeec------CCeEEEEeCCCC
Q 010769          298 AGKCN--LTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--STHSGFK--WAVA------ADVESLAWDPHA  364 (502)
Q Consensus       298 ~~~~~--~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~--~~~~------~~v~~v~~~p~~  364 (502)
                      +++..  ..+.. ....+..++|+|++..+++++..++.|.+|++..  +......  ....      ..+..++|+|++
T Consensus       172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG  251 (347)
T 3hfq_A          172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG  251 (347)
T ss_dssp             TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred             CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence            55432  22222 2346788999999943555567789999999875  2211111  1111      347889999998


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-CCcEEEE--ECCCCCeeE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLW--DLSNNQPSC  441 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~vw--d~~~~~~~~  441 (502)
                      ..+++++..++.|.+|++.....      ...+..+..+...+.+++|+|++ ++|++++. ++.|.+|  |..+++...
T Consensus       252 ~~l~v~~~~~~~v~v~~~~~~g~------~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          252 HFLYVSNRGYNTLAVFAVTADGH------LTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             CEEEEEEETTTEEEEEEECGGGC------EEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CEEEEEeCCCCEEEEEEECCCCc------EEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            75556777799999999973210      24455666667778999999998 66666665 5899999  555666433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=8.1e-18  Score=164.48  Aligned_cols=282  Identities=11%  Similarity=0.079  Sum_probs=173.5

Q ss_pred             eEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccC--CCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCC-CC
Q 010769          153 VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIP--AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD-VI  229 (502)
Q Consensus       153 ~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~-~~  229 (502)
                      .|++|+.... ..+.+|.++...+   .+.........  ..|..++|       +|+|++|++++.+ .|.+|++. .+
T Consensus         4 ~~~vg~~~~~-~~i~~~~~d~~~g---~l~~~~~~~~~~~~~~~~~a~-------spdg~~l~~~~~~-~v~~~~~~~~g   71 (365)
T 1jof_A            4 HLMIGTWTPP-GAIFTVQFDDEKL---TCKLIKRTEIPQDEPISWMTF-------DHERKNIYGAAMK-KWSSFAVKSPT   71 (365)
T ss_dssp             EEEEEESSSS-CEEEEEEEETTTT---EEEEEEEEECCTTCCCSEEEE-------CTTSSEEEEEEBT-EEEEEEEEETT
T ss_pred             EEEEEEccCC-CcEEEEEEECCCC---CEEEeeEEccCCCCCCcEEEE-------CCCCCEEEEEccc-eEEEEEECCCC
Confidence            3455554321 2355555655444   44322222112  23455555       8999999998887 99999985 32


Q ss_pred             CCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCc-EEEEEe-------------cCCcEEEEE
Q 010769          230 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN-ILASAS-------------ADKQVKIWD  295 (502)
Q Consensus       230 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~l~sgs-------------~Dg~v~vwd  295 (502)
                      ....                         ......+ +.+.+++|+|+++. ++++++             .+|++.+|+
T Consensus        72 ~~~~-------------------------~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~  125 (365)
T 1jof_A           72 EIVH-------------------------EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFS  125 (365)
T ss_dssp             EEEE-------------------------EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEE
T ss_pred             CEEE-------------------------eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEc
Confidence            1100                         0000011 23567899999543 345553             689999999


Q ss_pred             CC-CCeeeEEec----cCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEeCC-CCCCccc-eEe---ecCCeEEEEeCCCC
Q 010769          296 VA-AGKCNLTLE----HHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDAR-ISTHSGF-KWA---VAADVESLAWDPHA  364 (502)
Q Consensus       296 ~~-~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~~-~~~---~~~~v~~v~~~p~~  364 (502)
                      +. .++....+.    .+...+.+++|+|+| ++|+++. .++.|.+|++. +++.... ...   +...+..++|+|++
T Consensus       126 ~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg  204 (365)
T 1jof_A          126 VSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG  204 (365)
T ss_dssp             ECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS
T ss_pred             cCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC
Confidence            97 465544443    255789999999999 6666655 46899999998 5543221 112   24568999999998


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCcc---EEEe-------cCCC------CeeEEE-EcCCCCCEEEEEeCC-
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS---FTLH-------AHDK------AVCTIS-YNPLVPNLLATGSTD-  426 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~-------~h~~------~v~~l~-~sp~~~~~l~t~s~d-  426 (502)
                      ..+++++..++.|.+|++....       ....   ..+.       +|..      .+..++ |+|+| ++|++++.. 
T Consensus       205 ~~l~v~~~~~~~v~v~~~~~~~-------g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~  276 (365)
T 1jof_A          205 NYLYALMEAGNRICEYVIDPAT-------HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRAN  276 (365)
T ss_dssp             SEEEEEETTTTEEEEEEECTTT-------CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEES
T ss_pred             CEEEEEECCCCeEEEEEEeCCC-------CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCC
Confidence            7444444457899999875321       0211   1121       1222      478999 99998 666665542 


Q ss_pred             C-----cEEEEECC-CCCeeEEEE-ecCCCCCEEEEEEcC---CCCcEEEEEeC-CCcEEEEECCCC
Q 010769          427 K-----MVKLWDLS-NNQPSCIAS-RNPKAGAVFSVAFSE---DSPFVLAIGGS-KGKLEIWDTLSD  482 (502)
Q Consensus       427 g-----~i~vwd~~-~~~~~~~~~-~~~~~~~v~~~~~sp---d~~~llasg~~-dg~i~vwd~~~~  482 (502)
                      +     .|.+|++. +++...+.. ...+...+..++|+|   +|++ |++++. ++.|+||++...
T Consensus       277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~-l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW-MAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE-EEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE-EEEEEcCCCeEEEEEEchh
Confidence            2     89999996 555332222 333334466789999   8996 555555 589999999766

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=3.1e-18  Score=164.72  Aligned_cols=234  Identities=11%  Similarity=0.050  Sum_probs=166.4

Q ss_pred             CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccc-ceeeEEecCCCCcEEEEEecC
Q 010769          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD-SVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      ++|++++.++.|++||+.+.......                          ..++.. .+.+++|+|++..++++++.+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~--------------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~   55 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVI--------------------------TIADAGPTPMVPMVAPGGRIAYATVNKS   55 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE--------------------------ECTTCTTCCCCEEECTTSSEEEEEETTT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEE--------------------------EcCCCCCCccceEEcCCCCEEEEEeCCC
Confidence            57899999999999999753322110                          012222 478899999966666777788


Q ss_pred             CcEEEEECCCCeeeEEecc-C----CCCeEEEEEcCCCCcEEEEEE------------CCCcEEEEeCCCCCCccceEee
Q 010769          289 KQVKIWDVAAGKCNLTLEH-H----TDKVQAVAWNHHSPQILLSGS------------FDRSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~-h----~~~v~~l~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~  351 (502)
                      +.|.+||+.+++.+..+.. +    ...+.+++|+|++ ++|++++            .++.|.+||+.+.+... ....
T Consensus        56 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~  133 (337)
T 1pby_B           56 ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK-AFEA  133 (337)
T ss_dssp             TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE-EEEC
T ss_pred             CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEE-EEeC
Confidence            9999999999988877653 2    1267789999999 6677765            57999999998765443 3344


Q ss_pred             cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC----
Q 010769          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----  427 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg----  427 (502)
                      ...+.+++|+|++.. ++++  ++.|++||+.++         .....+..+.. ...+.|+|++..+++++..++    
T Consensus       134 ~~~~~~~~~s~dg~~-l~~~--~~~i~~~d~~~~---------~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~  200 (337)
T 1pby_B          134 PRQITMLAWARDGSK-LYGL--GRDLHVMDPEAG---------TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMAT  200 (337)
T ss_dssp             CSSCCCEEECTTSSC-EEEE--SSSEEEEETTTT---------EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred             CCCcceeEECCCCCE-EEEe--CCeEEEEECCCC---------cEeeeeecccc-CCCceeCCCccEEeeeccCCCceee
Confidence            567888999998874 5555  689999999876         44444543331 113378888743433333333    


Q ss_pred             -------------------cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          428 -------------------MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       428 -------------------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                                         .|.+||+.+++.. ......+...+.+++|+|++++ |+++  ++.|++||+.+++.+...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~-l~~~--~~~v~~~d~~~~~~~~~~  276 (337)
T 1pby_B          201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEEEEEE
T ss_pred             eeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCE-EEEe--CCeEEEEECCCCcCccee
Confidence                               4689999998854 4455556677899999999996 5555  689999999988776543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=8.6e-18  Score=165.39  Aligned_cols=287  Identities=10%  Similarity=0.031  Sum_probs=178.3

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010769          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      +...+|+|+|+.|+.++..+.  ...||+++........+..++...    .....|       +|+|++|+.++.++.|
T Consensus        38 ~~~~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~lt~~~~~~----~~~~~~-------spdg~~l~~~~~~~~l  104 (388)
T 3pe7_A           38 FYQKCFTRDGSKLLFGGAFDG--PWNYYLLDLNTQVATQLTEGRGDN----TFGGFL-------SPDDDALFYVKDGRNL  104 (388)
T ss_dssp             TTSCCBCTTSCEEEEEECTTS--SCEEEEEETTTCEEEECCCSSCBC----SSSCEE-------CTTSSEEEEEETTTEE
T ss_pred             hcCccCCCCCCEEEEEEcCCC--CceEEEEeCCCCceEEeeeCCCCC----ccceEE-------cCCCCEEEEEeCCCeE
Confidence            344899999999999987332  447888886654211122122111    113344       8999999999999999


Q ss_pred             EEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE--ecCCCCcEEEEE--------------
Q 010769          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA--WNKEFRNILASA--------------  285 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~~l~sg--------------  285 (502)
                      ++||+.++....                           ....+...+....  ++|++ .+++..              
T Consensus       105 ~~~d~~~g~~~~---------------------------~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A          105 MRVDLATLEENV---------------------------VYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             EEEETTTCCEEE---------------------------EEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHH
T ss_pred             EEEECCCCccee---------------------------eeechhhcccccceeECCCC-CeeccccccCcccccccccc
Confidence            999997643211                           1112333343333  47884 455532              


Q ss_pred             --------ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcC-CCCcEEEEEECC------CcEEEEeCCCCCCccceEe
Q 010769          286 --------SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFD------RSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       286 --------s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~  350 (502)
                              ..+..|.+||+.+++... +..+...+..+.|+| ++ ..|+.+...      ..|.++++...........
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  234 (388)
T 3pe7_A          157 KFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH  234 (388)
T ss_dssp             HHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC
T ss_pred             hhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC
Confidence                    234689999999886544 444667899999999 88 666666553      3788888766544332221


Q ss_pred             ec-CCeEEEEeCCCCCCEEEEEeCCC----eEEEEECCCCCCCCCCCCCCccEEEecCCC---CeeEEEEcCCCCCEEEE
Q 010769          351 VA-ADVESLAWDPHAEHSFVVSLEDG----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---AVCTISYNPLVPNLLAT  422 (502)
Q Consensus       351 ~~-~~v~~v~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~l~t  422 (502)
                      .. ..+..++|+|++..+++++..++    .|++||+.++..       ..+..+..+..   ....++|+|+|..++++
T Consensus       235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-------EEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred             CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-------EEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence            11 24778899999886656555433    399999987621       22223322110   12234789998444433


Q ss_pred             E--------eCCCcEEEEECCCCCeeEEEEecCCCC-----------CEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          423 G--------STDKMVKLWDLSNNQPSCIASRNPKAG-----------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       423 ~--------s~dg~i~vwd~~~~~~~~~~~~~~~~~-----------~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      .        ..+..|++||+.+++...+..   +..           .+.+++|+|||++++.++..+|...||.+.-
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          308 VQDDSGYKIENDPFLYVFNMKNGTQHRVAR---HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             ---------CCCCEEEEEETTTTEEEEEEE---CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             eeeccccccCCCCEEEEEeccCCceEEecc---ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence            2        456789999999876433332   333           4778899999997666666778777776644

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=7.5e-17  Score=157.21  Aligned_cols=287  Identities=8%  Similarity=0.081  Sum_probs=173.4

Q ss_pred             CccccccccccCCCceEEEEEecC-CcceeEEEEEecCCCCCCceeeeeccc-cCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          138 DSEDLEDMTINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~-~~~~l~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      +......++|+|++++|++++.++ ....+.+|.++...+   .+....... ....|..+.+         ++++|+++
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---~~~~~~~~~~~~~~p~~~~~---------dg~~l~~~  115 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG---TLHLLNTQKTMGADPCYLTT---------NGKNIVTA  115 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT---EEEEEEEEECSSSCEEEEEE---------CSSEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC---cEEEeeEeccCCCCcEEEEE---------CCCEEEEE
Confidence            345677899999999999988752 124678888886543   332222111 1223333332         67777666


Q ss_pred             c-CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          216 S-MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       216 ~-~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      + .++.|.+|++.....+......-.          ..   .........+...+.+++|+|++..+++++..++.|.+|
T Consensus       116 ~~~~~~v~~~~~~~~g~~~~~~~~~~----------~~---g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~  182 (361)
T 3scy_A          116 NYSGGSITVFPIGQDGALLPASDVIE----------FK---GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF  182 (361)
T ss_dssp             ETTTTEEEEEEBCTTSCBCSCSEEEE----------CC---CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ECCCCEEEEEEeCCCCcCcccceeEE----------cc---CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence            5 578999999975333221110000          00   000000112344578999999965455666668999999


Q ss_pred             ECCCCe-------e------eEEeccCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEeCCCCCCccceE-----eecCCe
Q 010769          295 DVAAGK-------C------NLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKW-----AVAADV  355 (502)
Q Consensus       295 d~~~~~-------~------~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~-----~~~~~v  355 (502)
                      ++....       .      ......+...+..++|+|++ +++++++ .++.|.+|++.++.......     .+....
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~  261 (361)
T 3scy_A          183 NINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS  261 (361)
T ss_dssp             EECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred             EEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence            887543       1      11122345668899999999 6665555 68999999998654321111     112346


Q ss_pred             EEEEeCCCCCCEEEEEeC-CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEE
Q 010769          356 ESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWD  433 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd  433 (502)
                      ..++|+|++..++++... ++.|.+|++......     ...+..+.. ...+.+++|+|++ ++|++++ .++.|.+|.
T Consensus       262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-----~~~~~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT-----LTKVGYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC-----EEEEEEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEEEEE
T ss_pred             ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc-----EEEeeEecC-CCCCceEEECCCC-CEEEEEECCCCCEEEEE
Confidence            799999998744444445 589999999632100     123444444 5678899999998 6666666 678999965


Q ss_pred             C--CCCCeeEEEEecCCCCCEEEEEEc
Q 010769          434 L--SNNQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       434 ~--~~~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      +  .+++...+ ....+...+.|+.|.
T Consensus       335 ~d~~~g~~~~~-~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          335 RDQATGLLTDI-KKDIKVDKPVCLKFV  360 (361)
T ss_dssp             ECTTTCCEEEC-SCCEECSSEEEEEEE
T ss_pred             EECCCCcEeec-ceeeeCCCCeEEEEc
Confidence            4  45653211 112244568888885

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=6.6e-19  Score=183.35  Aligned_cols=227  Identities=11%  Similarity=0.090  Sum_probs=164.8

Q ss_pred             CCCCCEEEEecC-CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcc-cceeeEEecCCCCcEEE
Q 010769          206 REKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAWNKEFRNILA  283 (502)
Q Consensus       206 s~~~~~la~g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~  283 (502)
                      +|||++||+++. +|.++||+++.+..                            ..+..|. ..|.+++|+|+  .+++
T Consensus        30 ~~DG~~la~~s~~~g~~~lw~~~~g~~----------------------------~~lt~~~~~~~~~~~~spd--~~l~   79 (582)
T 3o4h_A           30 VVDGDKLLVVGFSEGSVNAYLYDGGET----------------------------VKLNREPINSVLDPHYGVG--RVIL   79 (582)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEETTEE----------------------------EECCSSCCSEECEECTTCS--EEEE
T ss_pred             CCCCCeEEEEEccCCceeEEEEcCCCc----------------------------EeeecccccccccccCCCC--eEEE
Confidence            799999999887 99999999743211                            1122344 68999999998  4777


Q ss_pred             EEec---CCcEEEEECCC---CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEE
Q 010769          284 SASA---DKQVKIWDVAA---GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES  357 (502)
Q Consensus       284 sgs~---Dg~v~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  357 (502)
                      +++.   +...+||.+..   +... .+..+ ..+...+|+|++..++++++.++.+.+||+.++.... ...+..  .+
T Consensus        80 ~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-l~~~~~--~~  154 (582)
T 3o4h_A           80 VRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-LARLPG--FG  154 (582)
T ss_dssp             EEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-EEEESS--CE
T ss_pred             EeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-eecCCC--ce
Confidence            7775   45556655433   2222 34322 2344678888886666666666667799998776443 223333  88


Q ss_pred             EEeCCCCCCEEEEEeCC----CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC--cEEE
Q 010769          358 LAWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK--MVKL  431 (502)
Q Consensus       358 v~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg--~i~v  431 (502)
                      ++|+|+|. .++.++.+    +.|++||+.++         . ...+..|...+..++|+|+| +.|+++..++  .|++
T Consensus       155 ~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g---------~-~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~  222 (582)
T 3o4h_A          155 FVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSG---------G-LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVT  222 (582)
T ss_dssp             EEEEEETT-EEEEEEEEETTEEEEEEEETTTC---------C-CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEE
T ss_pred             EEECCCCC-EEEEEEEcCCCCeEEEEEcCCCC---------C-ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEE
Confidence            99999987 56655555    67999999875         2 34677888899999999999 8888888888  8999


Q ss_pred             EECCCCCeeEEEEecCCCCCEEEEE--------EcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          432 WDLSNNQPSCIASRNPKAGAVFSVA--------FSEDSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~--------~spd~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      ||+.+++..   ....|...+..++        |+||| .++++++.+|.+++|++  ++.+
T Consensus       223 ~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          223 VDPRDGSVE---DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             ECTTTCCEE---ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEE
T ss_pred             EcCCCCcEE---EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCee
Confidence            999988743   4556666666666        99999 58999999999999999  5443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=7.7e-18  Score=179.81  Aligned_cols=299  Identities=12%  Similarity=0.094  Sum_probs=189.4

Q ss_pred             cccccccCCCceEEEEEecCCc----ceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          142 LEDMTINPNDAVIVCARNEDDV----SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~----~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      +.+++|+|+|++|+.++.....    ..-.||+|+...+   ....  ...+.....++.|       ||+|++||.+. 
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g---~~~~--~~~l~~~~~~~~~-------SPDG~~la~~~-  128 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG---EFVR--GNELPRPIQYLCW-------SPVGSKLAYVY-  128 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---EECC--SSCCCSSBCCEEE-------CSSTTCEEEEE-
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC---cccc--ceecCcccccceE-------CCCCCEEEEEE-
Confidence            8899999999999998762100    0126777765544   2200  0111222344555       89999999986 


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccce---------eeEEecCCCCcEEEEEecC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV---------LGLAWNKEFRNILASASAD  288 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V---------~~l~~~~~~~~~l~sgs~D  288 (502)
                      ++.|++|++.++....-  ...                ......+.+|...|         .+++|+|++ ..|++++.|
T Consensus       129 ~~~i~~~~~~~g~~~~l--~~~----------------~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d  189 (719)
T 1z68_A          129 QNNIYLKQRPGDPPFQI--TFN----------------GRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFN  189 (719)
T ss_dssp             TTEEEEESSTTSCCEEC--CCC----------------CBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEE
T ss_pred             CCeEEEEeCCCCCcEEE--ecC----------------CCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEEC
Confidence            78999999976543210  000                00001122343333         589999994 578887765


Q ss_pred             C----------------------------------cEEEEECCCCeee--------EEeccCCCCeEEEEEcCCCCcEEE
Q 010769          289 K----------------------------------QVKIWDVAAGKCN--------LTLEHHTDKVQAVAWNHHSPQILL  326 (502)
Q Consensus       289 g----------------------------------~v~vwd~~~~~~~--------~~~~~h~~~v~~l~~~~~~~~~l~  326 (502)
                      .                                  .|++||+.+++..        ..+.+|...+.+++|+|++ ++++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~  268 (719)
T 1z68_A          190 DTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCL  268 (719)
T ss_dssp             CTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEE
T ss_pred             CCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEE
Confidence            2                                  7899999988753        1234588889999999997 7777


Q ss_pred             EEECCC----cEEEEe----CCCCCCccce----EeecCCeE-----EEEeCCCCCCEEE-EEeCCC--eEEEEECCCCC
Q 010769          327 SGSFDR----SVVMKD----ARISTHSGFK----WAVAADVE-----SLAWDPHAEHSFV-VSLEDG--TIKGFDIRTAK  386 (502)
Q Consensus       327 s~~~dg----~i~vwd----~~~~~~~~~~----~~~~~~v~-----~v~~~p~~~~~l~-~~~~dg--~i~i~d~~~~~  386 (502)
                      +....+    .|.+||    +.+++.....    ..+...+.     .+.|+|++..+++ ++..+|  .|.+|++... 
T Consensus       269 ~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~-  347 (719)
T 1z68_A          269 QWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE-  347 (719)
T ss_dssp             EEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST-
T ss_pred             EEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC-
Confidence            654332    488899    7766655444    34555565     7899999886555 344556  4666676544 


Q ss_pred             CCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC----CCcEEEEECCC--CCeeEEEEec----CCCCCEEEEE
Q 010769          387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST----DKMVKLWDLSN--NQPSCIASRN----PKAGAVFSVA  456 (502)
Q Consensus       387 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~----dg~i~vwd~~~--~~~~~~~~~~----~~~~~v~~~~  456 (502)
                              . ...+..+...+..+.++ ++..+++++..    ++.+++|.+..  +.. ....+.    ++...+..+.
T Consensus       348 --------~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~~l~~~~~~~~~~~~~~~  416 (719)
T 1z68_A          348 --------N-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPP-SKKCVTCHLRKERCQYYTAS  416 (719)
T ss_dssp             --------T-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSC-CEEESSTTTTTTTBCBEEEE
T ss_pred             --------c-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCC-CceeccCccCCCCCceEEEE
Confidence                    2 34555566667777777 66344445444    47888988754  321 012222    2556788999


Q ss_pred             EcCCCCcEEEEEeCC--CcEEEEECCCCccc
Q 010769          457 FSEDSPFVLAIGGSK--GKLEIWDTLSDAGI  485 (502)
Q Consensus       457 ~spd~~~llasg~~d--g~i~vwd~~~~~~~  485 (502)
                      |+|++++++++++..  ..+.+|++.+++.+
T Consensus       417 ~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~  447 (719)
T 1z68_A          417 FSDYAKYYALVCYGPGIPISTLHDGRTDQEI  447 (719)
T ss_dssp             ECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred             ECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence            999999766665544  46889999888754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.79  E-value=1.7e-18  Score=184.87  Aligned_cols=282  Identities=9%  Similarity=0.058  Sum_probs=179.6

Q ss_pred             ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC-----
Q 010769          143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-----  217 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~-----  217 (502)
                      .+++|+|++++++++ .++     .||+|+...+....+..++... .....++.|       ||+|++||+++.     
T Consensus        19 ~~~~~s~dg~~~~~~-~d~-----~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~-------SpDg~~la~~~~~~~~~   84 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADN-----NIVLYNIETGQSYTILSNRTMK-SVNASNYGL-------SPDRQFVYLESDYSKLW   84 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTS-----CEEEEESSSCCEEEEECHHHHH-TTTCSEEEE-------CTTSSEEEEEEEEEECS
T ss_pred             CccEECCCCeEEEEc-CCC-----CEEEEEcCCCcEEEEEcccccc-ccceeeEEE-------CCCCCeEEEEecCceeE
Confidence            368999999766554 344     5556665544222333333221 001245555       899999999876     


Q ss_pred             ----CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769          218 ----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       218 ----dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v  293 (502)
                          ++.|++||+.++....+                     .    .   ....+.+++|+|+| +.||+++ ++.|++
T Consensus        85 ~~s~~~~i~~~d~~~g~~~~~---------------------~----~---l~~~~~~~~~SPDG-~~la~~~-~~~i~~  134 (719)
T 1z68_A           85 RYSYTATYYIYDLSNGEFVRG---------------------N----E---LPRPIQYLCWSPVG-SKLAYVY-QNNIYL  134 (719)
T ss_dssp             SSCEEEEEEEEETTTTEECCS---------------------S----C---CCSSBCCEEECSST-TCEEEEE-TTEEEE
T ss_pred             EeecceEEEEEECCCCccccc---------------------e----e---cCcccccceECCCC-CEEEEEE-CCeEEE
Confidence                68999999976432110                     0    0   12458899999995 4777765 789999


Q ss_pred             EECCCCeeeEEe-ccCCCCe-----------------EEEEEcCCCCcEEEEEECCC-----------------------
Q 010769          294 WDVAAGKCNLTL-EHHTDKV-----------------QAVAWNHHSPQILLSGSFDR-----------------------  332 (502)
Q Consensus       294 wd~~~~~~~~~~-~~h~~~v-----------------~~l~~~~~~~~~l~s~~~dg-----------------------  332 (502)
                      |++.+++..... .++...|                 .+++|+|+| +.|++++.|.                       
T Consensus       135 ~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          135 KQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             ESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             EeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            999988765433 2333322                 489999999 7788777542                       


Q ss_pred             -----------cEEEEeCCCCCCc---cc-----eEeecCCeEEEEeCCCCCCEEEEEeCC----CeEEEEE----CCCC
Q 010769          333 -----------SVVMKDARISTHS---GF-----KWAVAADVESLAWDPHAEHSFVVSLED----GTIKGFD----IRTA  385 (502)
Q Consensus       333 -----------~i~vwd~~~~~~~---~~-----~~~~~~~v~~v~~~p~~~~~l~~~~~d----g~i~i~d----~~~~  385 (502)
                                 .|++||+.++...   ..     ...+...+.+++|+|++ .++++....    ..|.+||    +.++
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g  292 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTW  292 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCC
Confidence                       7889999876532   11     11245568999999985 355554322    2488899    6655


Q ss_pred             CCCCCCCCCCccEE--EecCCCCee-----EEEEcCCCCCEEE-EEeCCC--cEEEEECCCCCeeEEEEecCCCCCEEEE
Q 010769          386 KSDPDSTSQQSSFT--LHAHDKAVC-----TISYNPLVPNLLA-TGSTDK--MVKLWDLSNNQPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       386 ~~~~~~~~~~~~~~--~~~h~~~v~-----~l~~sp~~~~~l~-t~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~  455 (502)
                      ..       ..+..  ...|...+.     .+.|+|+|..+++ ++..+|  .|.+|++.+++.   ..+..+...+..+
T Consensus       293 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~lt~~~~~v~~~  362 (719)
T 1z68_A          293 DC-------PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQITSGKWEAINI  362 (719)
T ss_dssp             EC-------CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EECSCSSSCEEEE
T ss_pred             ce-------EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---EecccCceEEEEE
Confidence            21       11111  145677676     8899999854444 344555  477778777652   3344455568887


Q ss_pred             EEcCCCCcEEEEEeC----CCcEEEEECCC
Q 010769          456 AFSEDSPFVLAIGGS----KGKLEIWDTLS  481 (502)
Q Consensus       456 ~~spd~~~llasg~~----dg~i~vwd~~~  481 (502)
                      .++ ++..+++++..    .+.+++|.+..
T Consensus       363 ~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          363 FRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             EEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            777 88766666554    47889998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.76  E-value=2.5e-16  Score=152.20  Aligned_cols=238  Identities=9%  Similarity=0.084  Sum_probs=156.7

Q ss_pred             cccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCC--CcceeeeecCCCCCCCCCCEE-EEecCCCc
Q 010769          144 DMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA--FPLCMAWLDCPLKDREKGNFM-AVGSMEPA  220 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~w~~~~~~~s~~~~~l-a~g~~dg~  220 (502)
                      .+++++++.++++++.++     .|++|+....   .+..  ....+.  .|..+.|       +|+++++ +++..++.
T Consensus         4 g~~~~~~~~~~v~~~~~~-----~v~~~d~~~~---~~~~--~~~~~~~~~~~~~~~-------s~dg~~~~v~~~~~~~   66 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPN-----NLHVVDVASD---TVYK--SCVMPDKFGPGTAMM-------APDNRTAYVLNNHYGD   66 (349)
T ss_dssp             CCCCCTTCEEEEEEETTT-----EEEEEETTTT---EEEE--EEECSSCCSSCEEEE-------CTTSSEEEEEETTTTE
T ss_pred             cccccCCCEEEEEeCCCC-----eEEEEECCCC---cEEE--EEecCCCCCCceeEE-------CCCCCEEEEEeCCCCc
Confidence            467888999999998777     6777776544   2221  112222  3556665       7898865 45567899


Q ss_pred             EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC------------
Q 010769          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD------------  288 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D------------  288 (502)
                      |.+||+.+......... +                    .....+...+.+++|+|++ .+|++++.+            
T Consensus        67 i~~~d~~t~~~~~~~~~-~--------------------~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~  124 (349)
T 1jmx_B           67 IYGIDLDTCKNTFHANL-S--------------------SVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKP  124 (349)
T ss_dssp             EEEEETTTTEEEEEEES-C--------------------CSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECC
T ss_pred             EEEEeCCCCcEEEEEEc-c--------------------cccccccccccceEECCCC-CEEEEEcccccccccccccCC
Confidence            99999975432211000 0                    0000013447899999995 577777755            


Q ss_pred             CcEEEEECCCCee---eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe---------------
Q 010769          289 KQVKIWDVAAGKC---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---------------  350 (502)
Q Consensus       289 g~v~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---------------  350 (502)
                      +.|.+||+.+++.   +..+. +...+.+++|+|++ + +++++  +.|.+||+.+++.......               
T Consensus       125 ~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (349)
T 1jmx_B          125 PRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  199 (349)
T ss_dssp             CEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             CeEEEEECCCccccceeeecc-CCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcccee
Confidence            8999999988543   33444 34468899999999 5 44443  4499999987653221100               


Q ss_pred             -----------------------------------------------------ecCCeEEEEeCC-CCCCEEEEEeCCCe
Q 010769          351 -----------------------------------------------------VAADVESLAWDP-HAEHSFVVSLEDGT  376 (502)
Q Consensus       351 -----------------------------------------------------~~~~v~~v~~~p-~~~~~l~~~~~dg~  376 (502)
                                                                           ....+..++|+| ++. +++++  ++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~  276 (349)
T 1jmx_B          200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNR  276 (349)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESE
T ss_pred             eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCe
Confidence                                                                 011355677889 776 56666  889


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      |.+||+.+.         +.+..+. ....+.+++|+|++ ++|++++.++.|++||+.+.+.
T Consensus       277 v~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          277 LAKYDLKQR---------KLIKAAN-LDHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             EEEEETTTT---------EEEEEEE-CSSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTEE
T ss_pred             EEEEECccC---------eEEEEEc-CCCCccceEECCCC-CEEEEecCCCeEEEEeccccce
Confidence            999999876         4444544 33457899999998 6666678889999999998874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=1.2e-16  Score=157.45  Aligned_cols=300  Identities=11%  Similarity=0.013  Sum_probs=173.6

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..+.+++|+|+|+.|+.+...+.  ...||+++........+..++.    ....+..|       +|+|++|+.++.++
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g--~~~l~~~d~~~~~~~~l~~~~~----~~~~~~~~-------spdg~~l~~~~~~~  102 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDG--NRNYYLLNLETQQAVQLTEGKG----DNTFGGFI-------STDERAFFYVKNEL  102 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTS--SCEEEEEETTTTEEEECCCSSC----BCTTTCEE-------CTTSSEEEEEETTT
T ss_pred             eeeecCcCCCCCCEEEEEEecCC--CceEEEEECCCCcEEEeecCCC----CccccceE-------CCCCCEEEEEEcCC
Confidence            34788999999999988876532  2367888765541111111111    11112344       89999999999999


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcc----cceeeEEecCCCCcEEEEE-----ecCCc
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT----DSVLGLAWNKEFRNILASA-----SADKQ  290 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~V~~l~~~~~~~~~l~sg-----s~Dg~  290 (502)
                      .|++|++..+.... ......  ..     ..  . .. ...+....    .....+.|+|++. .++.+     ..+..
T Consensus       103 ~l~~~d~~~~~~~~-~~~~~~--~~-----~~--~-g~-~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~  169 (396)
T 3c5m_A          103 NLMKVDLETLEEQV-IYTVDE--EW-----KG--Y-GT-WVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCR  169 (396)
T ss_dssp             EEEEEETTTCCEEE-EEECCT--TE-----EE--E-EE-EEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEE
T ss_pred             cEEEEECCCCCcEE-EEeccc--cc-----CC--C-CC-EEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcce
Confidence            99999987643211 000000  00     00  0 00 00000000    0001145778744 44433     45678


Q ss_pred             EEEEECCCCeeeEEeccCCCCeEEEEEcC-CCCcEEEEEECC------CcEEEEeCCCCCCccceEee-cCCeEEEEeCC
Q 010769          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNH-HSPQILLSGSFD------RSVVMKDARISTHSGFKWAV-AADVESLAWDP  362 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~v~~~p  362 (502)
                      |.+||+.+++..... .+...+..+.|+| ++ ..|+.++.+      ..|.+|++............ ...+..++|+|
T Consensus       170 l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp  247 (396)
T 3c5m_A          170 LIKVDIETGELEVIH-QDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP  247 (396)
T ss_dssp             EEEEETTTCCEEEEE-EESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred             EEEEECCCCcEEeec-cCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence            999999988765544 4677899999999 66 555555443      36888888765433222211 22477899999


Q ss_pred             CCCCEEEEEeCC----CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC-CCCCEEEEEe-------------
Q 010769          363 HAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP-LVPNLLATGS-------------  424 (502)
Q Consensus       363 ~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l~t~s-------------  424 (502)
                      ++..+++++..+    +.|++||+.++         .. ..+..... .. +.|+| ++ ++|++++             
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g---------~~-~~l~~~~~-~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          248 DGSAMAYVSYFKGQTDRVIYKANPETL---------EN-EEVMVMPP-CS-HLMSNFDG-SLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             TSSCEEEEEEETTTCCEEEEEECTTTC---------CE-EEEEECCS-EE-EEEECSSS-SEEEEEECCC----------
T ss_pred             CCCEEEEEecCCCCccceEEEEECCCC---------Ce-EEeeeCCC-CC-CCccCCCC-ceEEEecCCcceeecccccc
Confidence            987555554432    44999999875         22 11221222 33 88999 88 6777654             


Q ss_pred             ---CCCcEEEEECCCCCeeEEEEecCCC--------CCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          425 ---TDKMVKLWDLSNNQPSCIASRNPKA--------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       425 ---~dg~i~vwd~~~~~~~~~~~~~~~~--------~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                         .++.|++||+.+++...+.......        ..+..++|+|+|+++++++..++...||.+.
T Consensus       315 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          315 NIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence               3478999999887643333222100        0256678999999756555556665565543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=5.7e-15  Score=138.82  Aligned_cols=237  Identities=14%  Similarity=0.145  Sum_probs=164.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec-CCCCcEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILAS  284 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~s  284 (502)
                      +++++++++.+.++.|.+|+... ....   .++.                  .....+|...+.++++. ++ ++++++
T Consensus        38 ~~~g~l~v~~~~~~~i~~~d~~g-~~~~---~~~~------------------~~~~~~~~~~p~~i~~~~~~-g~l~v~   94 (286)
T 1q7f_A           38 NAQNDIIVADTNNHRIQIFDKEG-RFKF---QFGE------------------CGKRDSQLLYPNRVAVVRNS-GDIIVT   94 (286)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTS-CEEE---EECC------------------BSSSTTCBSSEEEEEEETTT-TEEEEE
T ss_pred             CCCCCEEEEECCCCEEEEECCCC-cEEE---Eecc------------------cCCCcccccCceEEEEEcCC-CeEEEE
Confidence            68899888888899999999762 2111   1100                  00112455678999995 55 556665


Q ss_pred             Eec-CCcEEEEECCCCeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe---ecCCeEEEE
Q 010769          285 ASA-DKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADVESLA  359 (502)
Q Consensus       285 gs~-Dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~v~  359 (502)
                      ... ++.|.+|+ .+++.+..+. .+...+.++++++++ +++++...++.|.+|+... .... ...   ....+..++
T Consensus        95 ~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~~~~-~~~~~~~~~~p~~i~  170 (286)
T 1q7f_A           95 ERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG-NVLH-KFGCSKHLEFPNGVV  170 (286)
T ss_dssp             ECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS-CEEE-EEECTTTCSSEEEEE
T ss_pred             cCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCC-CEEE-EeCCCCccCCcEEEE
Confidence            543 88999999 5677776664 344678999999998 7888777889999999653 2222 222   224588999


Q ss_pred             eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC--CCCeeEEEEcCCCCCEEEEEeCCC-cEEEEECCC
Q 010769          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDK-MVKLWDLSN  436 (502)
Q Consensus       360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~dg-~i~vwd~~~  436 (502)
                      ++|++. ++++...++.|++|+...          ..+..+..+  ...+.+++++|++ +++++...++ .|.+|+.. 
T Consensus       171 ~~~~g~-l~v~~~~~~~i~~~~~~g----------~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~-  237 (286)
T 1q7f_A          171 VNDKQE-IFISDNRAHCVKVFNYEG----------QYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD-  237 (286)
T ss_dssp             ECSSSE-EEEEEGGGTEEEEEETTC----------CEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT-
T ss_pred             ECCCCC-EEEEECCCCEEEEEcCCC----------CEEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCC-
Confidence            999765 666777789999999743          344444433  3578999999998 8888887775 99999965 


Q ss_pred             CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       437 ~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      ++.............+.+++++|+|. ++++ +.+++|++|++.....
T Consensus       238 g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          238 GQLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             SCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCCCC
T ss_pred             CCEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEcccccc
Confidence            44322233333334588999999997 5666 5789999999866544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=1.6e-15  Score=149.18  Aligned_cols=242  Identities=10%  Similarity=0.014  Sum_probs=159.9

Q ss_pred             CCCCCCCCEEEEecC-CCc--EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC
Q 010769          203 LKDREKGNFMAVGSM-EPA--IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       203 ~~~s~~~~~la~g~~-dg~--I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                      ++|||+|++||.++. +|.  |.+|++.++..                           .....+|...+.++.|+|+ +
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~---------------------------~~lt~~~~~~~~~~~~spd-g   92 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA---------------------------TQLTEGRGDNTFGGFLSPD-D   92 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE---------------------------EECCCSSCBCSSSCEECTT-S
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce---------------------------EEeeeCCCCCccceEEcCC-C
Confidence            455999999999887 664  77778764321                           1122345556667889999 5


Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEE--cCCCCcEEEEE----------------------ECCCcEE
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW--NHHSPQILLSG----------------------SFDRSVV  335 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~----------------------~~dg~i~  335 (502)
                      ..|+.++.++.|++||+.+++....+..+...+....|  ++++ .+++..                      ..+..|.
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM  171 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEE
Confidence            58888898999999999999877766666665654444  8888 666532                      2446799


Q ss_pred             EEeCCCCCCccceEeecCCeEEEEeCC-CCCCEEEEEeC-----CCeEEEEECCCCCCCCCCCCCCccEEEecCC--CCe
Q 010769          336 MKDARISTHSGFKWAVAADVESLAWDP-HAEHSFVVSLE-----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAV  407 (502)
Q Consensus       336 vwd~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~--~~v  407 (502)
                      +||+.++.... ...+...+..++|+| ++..++++...     ...|.++|+...          ....+..+.  ..+
T Consensus       172 ~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~----------~~~~l~~~~~~~~~  240 (388)
T 3pe7_A          172 RVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT----------NMRKVKTHAEGESC  240 (388)
T ss_dssp             EEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC----------CCEESCCCCTTEEE
T ss_pred             EEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC----------ceEEeeeCCCCccc
Confidence            99998876433 445667789999999 87644344432     337888887643          233343343  357


Q ss_pred             eEEEEcCCCCCEEEEEeCCC----cEEEEECCCCCeeEEEEecCCCCC---EEEEEEcCCCCcEEEEE--------eCCC
Q 010769          408 CTISYNPLVPNLLATGSTDK----MVKLWDLSNNQPSCIASRNPKAGA---VFSVAFSEDSPFVLAIG--------GSKG  472 (502)
Q Consensus       408 ~~l~~sp~~~~~l~t~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~---v~~~~~spd~~~llasg--------~~dg  472 (502)
                      ..++|+|+|..+++++..++    .|++||+.+++...+.....+...   ...+.|+|+|++++++.        ..+.
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  320 (388)
T 3pe7_A          241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP  320 (388)
T ss_dssp             EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred             ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence            78999999944444443322    399999999886555554431100   11136999999755443        4566


Q ss_pred             cEEEEECCCCcc
Q 010769          473 KLEIWDTLSDAG  484 (502)
Q Consensus       473 ~i~vwd~~~~~~  484 (502)
                      .|++||+.+++.
T Consensus       321 ~i~~~d~~~~~~  332 (388)
T 3pe7_A          321 FLYVFNMKNGTQ  332 (388)
T ss_dssp             EEEEEETTTTEE
T ss_pred             EEEEEeccCCce
Confidence            899999988764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=3.5e-15  Score=143.46  Aligned_cols=202  Identities=19%  Similarity=0.126  Sum_probs=148.4

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe-eeEEe---------ccCCCCeEEEEEcC-CCCcEEEEEE-CC
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTL---------EHHTDKVQAVAWNH-HSPQILLSGS-FD  331 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~-~~~~~---------~~h~~~v~~l~~~~-~~~~~l~s~~-~d  331 (502)
                      ++-....+|+++|++ +++++.+.++.|++|+..... .+..+         ..+......|+++| ++ .++++.+ .+
T Consensus        88 ~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~  165 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCN  165 (329)
T ss_dssp             TTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSC
T ss_pred             CccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCC
Confidence            345678999999994 588888889999999976542 45555         23455789999999 55 7888876 69


Q ss_pred             CcEEEEeCCCCCCccceEee----------cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-
Q 010769          332 RSVVMKDARISTHSGFKWAV----------AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-  400 (502)
Q Consensus       332 g~i~vwd~~~~~~~~~~~~~----------~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-  400 (502)
                      +.|++|+.. +.........          -.....++++|++..++++...++.|++|+..++         ..+..+ 
T Consensus       166 ~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---------~~~~~~~  235 (329)
T 3fvz_A          166 SRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---------EFVREIK  235 (329)
T ss_dssp             CEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------CEEEEEC
T ss_pred             CeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---------cEEEEEe
Confidence            999999943 3332212111          1237899999985667888888999999999865         445555 


Q ss_pred             -ecCCCCeeEEEEcCCCCCEEEEEe-------CCCcEEEEECCCCCeeEEEEe---cCCCCCEEEEEEcCCCCcEEEEEe
Q 010769          401 -HAHDKAVCTISYNPLVPNLLATGS-------TDKMVKLWDLSNNQPSCIASR---NPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       401 -~~h~~~v~~l~~sp~~~~~l~t~s-------~dg~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~spd~~~llasg~  469 (502)
                       ..+...+.+++|+| + .++++.+       .+..|++|++.+++.  +..+   ..+...+..++++|+|. ++++..
T Consensus       236 ~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG~-lyvad~  310 (329)
T 3fvz_A          236 HASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDGT-VYIGDA  310 (329)
T ss_dssp             CTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTSE-EEEEES
T ss_pred             ccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCCC-EEEEEC
Confidence             34566788999999 3 4444433       345899999998873  4443   35667799999999995 788888


Q ss_pred             CCCcEEEEECCCC
Q 010769          470 SKGKLEIWDTLSD  482 (502)
Q Consensus       470 ~dg~i~vwd~~~~  482 (502)
                      .+++|++|++...
T Consensus       311 ~~~~I~~~~~~~~  323 (329)
T 3fvz_A          311 HTNTVWKFTLTEK  323 (329)
T ss_dssp             SSCCEEEEEEEEC
T ss_pred             CCCEEEEEeCCcc
Confidence            8999999998653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.72  E-value=6.6e-15  Score=143.75  Aligned_cols=249  Identities=9%  Similarity=0.038  Sum_probs=156.7

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCE--EEEec-
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF--MAVGS-  216 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~--la~g~-  216 (502)
                      ..+..++|+|++++|++++.+    .+.+|.++. .+   .+...........|.++       .++|+|++  ++++. 
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~----~v~~~~~~~-~g---~~~~~~~~~~~g~~~~~-------~~spdg~~l~~~~~~~  104 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK----KWSSFAVKS-PT---EIVHEASHPIGGHPRAN-------DADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT----EEEEEEEEE-TT---EEEEEEEEECCSSGGGG-------CTTSCCEEEEEEECSS
T ss_pred             CCCcEEEECCCCCEEEEEccc----eEEEEEECC-CC---CEEEeeEeecCCCCccE-------EECCCCCEEEEEEecC
Confidence            357789999999999888754    567777652 22   22111111111224444       34899994  55654 


Q ss_pred             ------------CCCcEEEeeCCC-CCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769          217 ------------MEPAIEIWDLDV-IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       217 ------------~dg~I~iwdl~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                                  .+|.+.+|+++. +.......                       .....+...+.+++|+|++. +|+
T Consensus       105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~-----------------------~~~~~~~~~~~~~~~spdG~-~l~  160 (365)
T 1jof_A          105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ-----------------------NYEYQENTGIHGMVFDPTET-YLY  160 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE-----------------------EEECCTTCCEEEEEECTTSS-EEE
T ss_pred             CcceeccceeecCCceEEEEccCCCCcCcceEe-----------------------eEEeCCCCcceEEEECCCCC-EEE
Confidence                        689999999963 21110000                       00012456789999999954 566


Q ss_pred             EEe-cCCcEEEEECC-CCeee--EEec--cCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEeCCC--CCCcc---ceEee
Q 010769          284 SAS-ADKQVKIWDVA-AGKCN--LTLE--HHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARI--STHSG---FKWAV  351 (502)
Q Consensus       284 sgs-~Dg~v~vwd~~-~~~~~--~~~~--~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~--~~~~~---~~~~~  351 (502)
                      ++. .++.|++|++. +++..  ..+.  .|...+..++|+|++ ++|++++ .++.|.+|++..  ++...   .....
T Consensus       161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~  239 (365)
T 1jof_A          161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI  239 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence            554 46899999998 67643  3333  245679999999999 6666665 478999998753  33211   01111


Q ss_pred             -------cC------CeEEEE-eCCCCCCEEEEEeC-CC-----eEEEEECCCCCCCCCCCCCCccE---EEecCCCCee
Q 010769          352 -------AA------DVESLA-WDPHAEHSFVVSLE-DG-----TIKGFDIRTAKSDPDSTSQQSSF---TLHAHDKAVC  408 (502)
Q Consensus       352 -------~~------~v~~v~-~~p~~~~~l~~~~~-dg-----~i~i~d~~~~~~~~~~~~~~~~~---~~~~h~~~v~  408 (502)
                             ..      .+..++ |+|++. +++++.. .+     .|.+|++...        .....   ....+...+.
T Consensus       240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v~~~~~~--------g~~~~~~~~~~~~~~~~~  310 (365)
T 1jof_A          240 PPGIPDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQGYIAGFKLRDC--------GSIEKQLFLSPTPTSGGH  310 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEECTT--------SCEEEEEEEEECSSCCTT
T ss_pred             CCCcCCcccccccccccccEEEECCCCC-EEEEECCCCCCCCCCeEEEEEECCC--------CCEEEeeeeeecCCCCcc
Confidence                   11      478899 999987 4555433 33     8999999632        12222   2334555678


Q ss_pred             EEEEcC---CCCCEEEEEeC-CCcEEEEECCCCC
Q 010769          409 TISYNP---LVPNLLATGST-DKMVKLWDLSNNQ  438 (502)
Q Consensus       409 ~l~~sp---~~~~~l~t~s~-dg~i~vwd~~~~~  438 (502)
                      .++|+|   ++ ++|++++. ++.|++|++....
T Consensus       311 ~~a~sp~~~dg-~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          311 SNAVSPCPWSD-EWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             CCCEEECTTCT-TEEEEECSSSCEEEEEEEETTE
T ss_pred             cceecCCCcCC-CEEEEEEcCCCeEEEEEEchhh
Confidence            899999   77 77887776 4899999987653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=4.9e-16  Score=166.24  Aligned_cols=242  Identities=12%  Similarity=0.153  Sum_probs=155.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+|.+|+++  ++.|++|++.++.+.   .++.+.                   ....+......++|||++ .+|+.+
T Consensus        25 ~~dg~~~~~~--~~~i~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~Spdg-~~l~~~   79 (740)
T 4a5s_A           25 ISDHEYLYKQ--ENNILVFNAEYGNSS---VFLENS-------------------TFDEFGHSINDYSISPDG-QFILLE   79 (740)
T ss_dssp             CSSSEEEEEE--TTEEEEEETTTCCEE---EEECTT-------------------TTTTCCSCCCEEEECTTS-SEEEEE
T ss_pred             CCCCcEEEEc--CCcEEEEECCCCceE---EEEech-------------------hhhhhcccccceEECCCC-CEEEEE
Confidence            7999999997  899999999865432   111110                   001122233458999994 577887


Q ss_pred             ecC---------CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eec---
Q 010769          286 SAD---------KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVA---  352 (502)
Q Consensus       286 s~D---------g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~---  352 (502)
                      +.+         +.+.+||+.++++. .+..|...+...+|+|+| +.|+.+ .++.|++|++.++....... ...   
T Consensus        80 ~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~  156 (740)
T 4a5s_A           80 YNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII  156 (740)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             ECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEEEcCCCCccce
Confidence            776         56679999999865 466678899999999999 667666 47899999998766443221 111   


Q ss_pred             --------------CCeEEEEeCCCCCCEEEEEeCCC-----------------------------------eEEEEECC
Q 010769          353 --------------ADVESLAWDPHAEHSFVVSLEDG-----------------------------------TIKGFDIR  383 (502)
Q Consensus       353 --------------~~v~~v~~~p~~~~~l~~~~~dg-----------------------------------~i~i~d~~  383 (502)
                                    +....+.|+|+|..++++...++                                   .|++||+.
T Consensus       157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~  236 (740)
T 4a5s_A          157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD  236 (740)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT
T ss_pred             ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC
Confidence                          12235899999875444433222                                   46667776


Q ss_pred             C---CCCCCCCCCCCccEEEe------cCCCCeeEEEEcCCCCCEEEEEeC----CCcEEEEECCCCC-------eeEEE
Q 010769          384 T---AKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGST----DKMVKLWDLSNNQ-------PSCIA  443 (502)
Q Consensus       384 ~---~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~----dg~i~vwd~~~~~-------~~~~~  443 (502)
                      +   +..       .....+.      +|...+..++|+|++ ++++....    +..|++||+.+++       ...+.
T Consensus       237 ~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~  308 (740)
T 4a5s_A          237 SLSSVTN-------ATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI  308 (740)
T ss_dssp             SCCSSSC-------CCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE
T ss_pred             CCCCCCc-------ceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee
Confidence            5   310       0222333      277789999999998 65554432    3369999998876       11111


Q ss_pred             EecCCCCCEE-----EEEEcCCCCcEEEEEe-CCC--cEEEEECCCCcc
Q 010769          444 SRNPKAGAVF-----SVAFSEDSPFVLAIGG-SKG--KLEIWDTLSDAG  484 (502)
Q Consensus       444 ~~~~~~~~v~-----~~~~spd~~~llasg~-~dg--~i~vwd~~~~~~  484 (502)
                      . ..+.+.|.     ...|+|||+.++...+ .+|  .|++|++.++..
T Consensus       309 ~-~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          309 E-MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             E-ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             e-ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence            1 33444443     6889999996442444 444  588888876554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=4e-15  Score=159.20  Aligned_cols=287  Identities=9%  Similarity=0.084  Sum_probs=171.2

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC--
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME--  218 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d--  218 (502)
                      ...++.|+|++.+|+++  ++     .|+.|+...+....+...|...  .  ..+.+  ..+.+||+|++||.++.+  
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~-----~i~~~~~~~~~~~~~~~~~~~~--~--~~~~~--~~~~~Spdg~~l~~~~~~~~   84 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--EN-----NILVFNAEYGNSSVFLENSTFD--E--FGHSI--NDYSISPDGQFILLEYNYVK   84 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TT-----EEEEEETTTCCEEEEECTTTTT--T--CCSCC--CEEEECTTSSEEEEEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CC-----cEEEEECCCCceEEEEechhhh--h--hcccc--cceEECCCCCEEEEEECCee
Confidence            35678999999988886  54     5566665444222333333211  1  11111  012238999999999876  


Q ss_pred             -------CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769          219 -------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       219 -------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v  291 (502)
                             +.+.+||+.++...                            .+..|...+...+|||+| +.||.+ .++.|
T Consensus        85 ~~r~~~~~~~~~~d~~~~~~~----------------------------~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i  134 (740)
T 4a5s_A           85 QWRHSYTASYDIYDLNKRQLI----------------------------TEERIPNNTQWVTWSPVG-HKLAYV-WNNDI  134 (740)
T ss_dssp             CSSSCEEEEEEEEETTTTEEC----------------------------CSSCCCTTEEEEEECSST-TCEEEE-ETTEE
T ss_pred             eEEEccceEEEEEECCCCcEE----------------------------EcccCCCcceeeEECCCC-CEEEEE-ECCeE
Confidence                   56679999753221                            233567789999999995 467776 46899


Q ss_pred             EEEECCCCeeeEE-eccCCCCe-----------------EEEEEcCCCCcEEEEEECCC---------------------
Q 010769          292 KIWDVAAGKCNLT-LEHHTDKV-----------------QAVAWNHHSPQILLSGSFDR---------------------  332 (502)
Q Consensus       292 ~vwd~~~~~~~~~-~~~h~~~v-----------------~~l~~~~~~~~~l~s~~~dg---------------------  332 (502)
                      ++|++.+++..+. ..++...+                 .++.|+|+| +.|+.++.|.                     
T Consensus       135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~  213 (740)
T 4a5s_A          135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKT  213 (740)
T ss_dssp             EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred             EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcc
Confidence            9999988875442 22333323                 358999999 7677664321                     


Q ss_pred             ---------------cEEEEeCCC---CCC---ccceE-----eecCCeEEEEeCCCCCCEEEEEeC---CCeEEEEECC
Q 010769          333 ---------------SVVMKDARI---STH---SGFKW-----AVAADVESLAWDPHAEHSFVVSLE---DGTIKGFDIR  383 (502)
Q Consensus       333 ---------------~i~vwd~~~---~~~---~~~~~-----~~~~~v~~v~~~p~~~~~l~~~~~---dg~i~i~d~~  383 (502)
                                     .|++||+.+   +..   .....     .+...+..++|+|++..+++....   +..|.+||+.
T Consensus       214 ~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~  293 (740)
T 4a5s_A          214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD  293 (740)
T ss_dssp             EEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred             eeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC
Confidence                           478888887   532   11111     144458899999997633333322   2369999998


Q ss_pred             CCCCCCCCCCCCccEEE--ecCCCCee-----EEEEcCCCCCEEE-EEeC-CC--cEEEEECCCCCeeEEEEecCCCCCE
Q 010769          384 TAKSDPDSTSQQSSFTL--HAHDKAVC-----TISYNPLVPNLLA-TGST-DK--MVKLWDLSNNQPSCIASRNPKAGAV  452 (502)
Q Consensus       384 ~~~~~~~~~~~~~~~~~--~~h~~~v~-----~l~~sp~~~~~l~-t~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~v  452 (502)
                      ++......   ..+..+  ..|...|.     .++|+|+| +.|+ ..+. +|  .|++|++.++...   .+......|
T Consensus       294 tg~~~~~~---~~~~~l~~~~~~~~v~~~~~~~p~fspDG-~~l~~~~s~~~G~~~l~~~~~~~~~~~---~lT~g~~~v  366 (740)
T 4a5s_A          294 ESSGRWNC---LVARQHIEMSTTGWVGRFRPSEPHFTLDG-NSFYKIISNEEGYRHICYFQIDKKDCT---FITKGTWEV  366 (740)
T ss_dssp             TTTTEEEE---CGGGCEEEECSSSCSSSSSCCCCEECTTS-SEEEEEEECTTSCEEEEEEETTCSSCE---ESCCSSSCE
T ss_pred             CCccccce---eEEEEeeeccCCceEccCcCCCceEcCCC-CEEEEEEEcCCCceEEEEEECCCCceE---ecccCCEEE
Confidence            86200000   011222  45665554     78999999 5554 5553 43  5888998877632   333334456


Q ss_pred             EEEEEcCCCCcEEEEEeC----CCcEEEEEC
Q 010769          453 FSVAFSEDSPFVLAIGGS----KGKLEIWDT  479 (502)
Q Consensus       453 ~~~~~spd~~~llasg~~----dg~i~vwd~  479 (502)
                      ..+.+ +++..++++++.    .+...||.+
T Consensus       367 ~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v  396 (740)
T 4a5s_A          367 IGIEA-LTSDYLYYISNEYKGMPGGRNLYKI  396 (740)
T ss_dssp             EEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             EEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence            65542 446666666655    234445544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=2.8e-15  Score=158.43  Aligned_cols=297  Identities=9%  Similarity=0.012  Sum_probs=178.3

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccC----CCcceeeeecCCCCCCCCCCE-E
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIP----AFPLCMAWLDCPLKDREKGNF-M  212 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~w~~~~~~~s~~~~~-l  212 (502)
                      |...+..++++++..+++.+..+.+ ....||.+... +....+..+......    .......|.     .||+|++ |
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~SPDg~~~l   94 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPRPAEA-GRATLVRRRAD-GAEESALPAPWNVRNRVFEYSGFPWAGV-----PRPAGGPLL   94 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEETTTT-TEEEEEEECTT-SCEEESSCTTCCBCCCGGGTCCCCEEEE-----CCSSSSCEE
T ss_pred             cCCccceeEEcCCeEEEEecCcccC-CcEEEEEECCC-CCcceeCCCCccccccccccCCccceee-----eecCCCeEE
Confidence            5667889999987655555532221 35688887332 211112222211100    000022231     1489998 7


Q ss_pred             EEecC-CCcEEEeeCC--C-CCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          213 AVGSM-EPAIEIWDLD--V-IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       213 a~g~~-dg~I~iwdl~--~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      +.++. +..|.+|++.  . .. ...  + .                   ......|...+.+++|+|++ +.|++++.+
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~-~~~--l-~-------------------~~~~~~~~~~~~~~~~spDg-~~l~~~~~~  150 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAV-PRP--L-T-------------------PVSAVGGGLRWADPVLLPER-GEVWCMAEE  150 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCC-CEE--C-S-------------------CCCCSTTCEEEEEEEEETTT-TEEEEEEEE
T ss_pred             EEEECCCCeEEEEcCCCCCCCC-CEe--c-c-------------------CCccCCCCccccCcEECCCC-CEEEEEEec
Confidence            76654 4556666554  1 11 100  0 0                   00001166788999999995 577777776


Q ss_pred             ----------CcEEEEECCC------CeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECC--------CcEEEEeCC-CC
Q 010769          289 ----------KQVKIWDVAA------GKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFD--------RSVVMKDAR-IS  342 (502)
Q Consensus       289 ----------g~v~vwd~~~------~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~vwd~~-~~  342 (502)
                                ..|++|++.+      ++. ..+. .+...+..++|+|+| +.|+.++.+        ..|.+||+. ++
T Consensus       151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          151 FTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             ECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred             ccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence                      5899999988      554 4454 566788889999999 777766644        379999998 45


Q ss_pred             ---CCccceEeecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCC-CC--------ee
Q 010769          343 ---THSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KA--------VC  408 (502)
Q Consensus       343 ---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~--------v~  408 (502)
                         ........+...+..++|+|++. +++++..++  .|.+||+.++         . ...+..+. ..        +.
T Consensus       229 ~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~---------~-~~~l~~~~~~~~~p~w~~~~~  297 (662)
T 3azo_A          229 RFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATG---------A-ATQLCRREEEFAGPLWTPGMR  297 (662)
T ss_dssp             CEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTC---------C-EEESSCCSSBSSCCCCSTTCC
T ss_pred             cccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCC---------c-eeecccccccccCccccccCc
Confidence               22222223357899999999987 788888888  5666665443         1 11222121 11        56


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEE--ECCCCCeeEEEEecCCCCCEEEE-EEcCCCCcEEEEEeCCC--cEEEEECCCCc
Q 010769          409 TISYNPLVPNLLATGSTDKMVKLW--DLSNNQPSCIASRNPKAGAVFSV-AFSEDSPFVLAIGGSKG--KLEIWDTLSDA  483 (502)
Q Consensus       409 ~l~~sp~~~~~l~t~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~v~~~-~~spd~~~llasg~~dg--~i~vwd~~~~~  483 (502)
                      +++|+|++ .++++++. +.++||  |+.+++   +..+..+.+.+..+ +++++. .++++++.+.  .|.+|++.+++
T Consensus       298 ~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          298 WFAPLANG-LIAVVHGK-GAAVLGILDPESGE---LVDAAGPWTEWAATLTVSGTR-AVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             SEEECTTS-CEEEEEBS-SSCEEEEEETTTTE---EEECCSSCCEEEEEEEEETTE-EEEEEEETTEEEEEEEEETTTCC
T ss_pred             eEeEeCCC-EEEEEEEc-CccEEEEEECCCCc---EEEecCCCCeEEEEEecCCCE-EEEEEcCCCCCCEEEEEECCCCc
Confidence            78999987 89999988 999999  555554   45566667777776 554433 2344445554  46666766665


Q ss_pred             c
Q 010769          484 G  484 (502)
Q Consensus       484 ~  484 (502)
                      .
T Consensus       372 ~  372 (662)
T 3azo_A          372 A  372 (662)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.69  E-value=1.3e-14  Score=141.19  Aligned_cols=271  Identities=10%  Similarity=0.071  Sum_probs=170.3

Q ss_pred             EEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC----------CCcEEEeeCCCCCCCCcee
Q 010769          167 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM----------EPAIEIWDLDVIDEVQPHV  236 (502)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~----------dg~I~iwdl~~~~~~~~~~  236 (502)
                      .|++|+....   .+.  ........| .+.+       +|+|++|++++.          ++.|.+||+.+......+.
T Consensus        32 ~v~v~D~~t~---~~~--~~i~~g~~p-~i~~-------spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~   98 (361)
T 2oiz_A           32 RVHVYDYTNG---KFL--GMVPTAFNG-HVQV-------SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS   98 (361)
T ss_dssp             EEEEEETTTC---CEE--EEEECCEEE-EEEE-------CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCC---eEE--EEecCCCCC-ceEE-------CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence            7777776554   332  122222333 4444       899999998863          5679999987544332221


Q ss_pred             eeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec--CCcEEEEECCCCeeeEE-eccCCCCeE
Q 010769          237 ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIWDVAAGKCNLT-LEHHTDKVQ  313 (502)
Q Consensus       237 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--Dg~v~vwd~~~~~~~~~-~~~h~~~v~  313 (502)
                      +..                     ....+......++++|+++ +|+++..  +++|.+||+.+++.+.. +.. . ...
T Consensus        99 ~~~---------------------~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~  154 (361)
T 2oiz_A           99 LPP---------------------KRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCW  154 (361)
T ss_dssp             ECT---------------------TBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEE
T ss_pred             cCc---------------------cccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEEecC-C-Ccc
Confidence            110                     0011334577899999954 6766653  68999999999998888 653 2 233


Q ss_pred             EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce------EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCC
Q 010769          314 AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS  387 (502)
Q Consensus       314 ~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~  387 (502)
                      .+.+.|.+...+++.+.||.+.+|++.........      +........+.+++++. .++..+.++.|.++|+.....
T Consensus       155 ~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~~  233 (361)
T 2oiz_A          155 SVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKD-KAHFVSYYGNVYSADFSGDEV  233 (361)
T ss_dssp             EEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSS-EEEEEBTTSEEEEEECSSSSC
T ss_pred             eeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCC-EEEEEeCCCeEEEEEecCCCc
Confidence            46678887678899999999999998653222101      00111111223345444 455566789999999875411


Q ss_pred             CCCCCCCCccEEEec------C----CCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEECCCCCeeEEEEecC
Q 010769          388 DPDSTSQQSSFTLHA------H----DKAVCTISYNPLVPNLLATGS----------TDKMVKLWDLSNNQPSCIASRNP  447 (502)
Q Consensus       388 ~~~~~~~~~~~~~~~------h----~~~v~~l~~sp~~~~~l~t~s----------~dg~i~vwd~~~~~~~~~~~~~~  447 (502)
                             .....+..      +    ......++|+|++..++++.+          ..+.|.+||+.+.+  .+..+..
T Consensus       234 -------~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~  304 (361)
T 2oiz_A          234 -------KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPG  304 (361)
T ss_dssp             -------EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEEC
T ss_pred             -------eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEec
Confidence                   11111110      0    111223789999845444443          13479999999987  4555555


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--cccccc
Q 010769          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD--AGISNR  488 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~--~~~~~~  488 (502)
                      +.  +.+++|+|+|++ |++++. +.|.+||+.++  +.+.++
T Consensus       305 ~~--p~~ia~spdg~~-l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          305 RD--ALSMTIDQQRNL-MLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             TT--CCEEEEETTTTE-EEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             CC--eeEEEECCCCCE-EEEeCC-CeEEEEECCCCcceeeEEe
Confidence            54  899999999995 555665 99999999999  877764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=4e-14  Score=150.74  Aligned_cols=289  Identities=10%  Similarity=0.031  Sum_probs=182.3

Q ss_pred             CCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC-----cEEE
Q 010769          149 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP-----AIEI  223 (502)
Q Consensus       149 p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg-----~I~i  223 (502)
                      |+|+.++.....+....-.+|..+...+.. .+..........-...+    ..+.|||+|++||.++.++     .|++
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lld~~~l~~~~~~~~----~~~~~SPDg~~la~~~~~~G~~~~~i~v  155 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEA-RVFLDPNILSDDGTVAL----RGYAFSEDGEYFAYGLSASGSDWVTIKF  155 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCC-EEEECGGGGCTTSCEEE----EEEEECTTSSEEEEEEEETTCSCEEEEE
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCc-EEEECHHHhccCCCEEE----EEEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            888888887766544344677776533311 11111111111100011    1123389999999876543     8999


Q ss_pred             eeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc-------------
Q 010769          224 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ-------------  290 (502)
Q Consensus       224 wdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~-------------  290 (502)
                      ||+.++.....                          ..  ....+.+++|+|++ ..|+.++.++.             
T Consensus       156 ~d~~tg~~~~~--------------------------~~--~~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          156 MKVDGAKELPD--------------------------VL--ERVKFSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EETTTTEEEEE--------------------------EE--EEECSCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EECCCCCCCcc--------------------------cc--cCcccceEEEEeCC-CEEEEEEECCccccccccccccCC
Confidence            99986432210                          00  11236789999995 57777777665             


Q ss_pred             ---EEEEECCCCee----eEEeccCCCCeEEEEEcCCCCcEEEEEEC-----CCcEEEEeCCC------CC-CccceEee
Q 010769          291 ---VKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARI------ST-HSGFKWAV  351 (502)
Q Consensus       291 ---v~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~vwd~~~------~~-~~~~~~~~  351 (502)
                         |++|++.+++.    +.....|...+..+.|+|+| ++|+.++.     +..|.+||+.+      +. .......+
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence               99999988762    22223355668899999999 55655543     56899999986      43 22323333


Q ss_pred             cCCeEEEEeCCCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCCCCccEEEecCCC--CeeEEEEcCCCCCEEEEEeCC
Q 010769          352 AADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      ...+.. .|+|++..+++.+..+   +.|.+||+.+..       ......+..|..  .+..++|++.+ .++++...+
T Consensus       286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~  356 (710)
T 2xdw_A          286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE-------ESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHD  356 (710)
T ss_dssp             SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC-------GGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEET
T ss_pred             CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC-------cccceeccCCCCCCeEEEEEEEcCC-EEEEEEEEC
Confidence            444444 4888877555555433   369999987651       012345555544  68889998755 788888888


Q ss_pred             Cc--EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC---CCcEEEEECCCCc
Q 010769          427 KM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS---KGKLEIWDTLSDA  483 (502)
Q Consensus       427 g~--i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~---dg~i~vwd~~~~~  483 (502)
                      +.  |++|++.+++  .+..+..+.+.+..++++|++..++++.++   .++|++||+.+++
T Consensus       357 g~~~l~~~~~~~g~--~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          357 VKNTLQLHDLATGA--LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTTCC--EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCCCC--EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            85  5667876665  344555567789999999999765555443   3689999998876

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=1.2e-13  Score=132.77  Aligned_cols=268  Identities=9%  Similarity=0.023  Sum_probs=172.3

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA  220 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~  220 (502)
                      .|.++.|+|.+..++....+.   .+++|.-.       .+....  .-...+.++.|       +++|++++++..++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~--~~~~~~~~~~~-------~~~g~l~~~~~~~~~   67 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISES---ELQTITAE-------PWLEIS--KKGLQLEGLNF-------DRQGQLFLLDVFEGN   67 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGG---GSCEEECE-------EEEEEE--SSCCCEEEEEE-------CTTSCEEEEETTTCE
T ss_pred             ccceeeecCCccceeEEeecc---cCcccccc-------eeEEEe--ccCccccCcEE-------CCCCCEEEEECCCCE
Confidence            477888898888777665554   34454111       111100  01123356666       688998888888999


Q ss_pred             EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC----CcEEEEEC
Q 010769          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD----KQVKIWDV  296 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D----g~v~vwd~  296 (502)
                      |.+|+.......                           .....+...+.+++|+|++ .+++++..+    +.|.+||.
T Consensus        68 i~~~d~~~~~~~---------------------------~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           68 IFKINPETKEIK---------------------------RPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             EEEECTTTCCEE---------------------------EEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECT
T ss_pred             EEEEeCCCCcEE---------------------------EEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeC
Confidence            999998642211                           0111345679999999994 577766666    68999999


Q ss_pred             CCCeeeEEec--cCCCCeEEEEEcCCCCcEEEEEEC------CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEE
Q 010769          297 AAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSF------DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       297 ~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  368 (502)
                      .+++....+.  .+...+.++.++|++ +++++...      .+.|..++..+..... .......+..++|+|++..++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~  197 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLW  197 (333)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEE
T ss_pred             CCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEE
Confidence            8876543332  245679999999998 66666543      3556666665443322 223345678999999876555


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCCCCCccE--------EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSF--------TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      ++.+.++.|.+|++.+..        ..+.        .+..+ ..+..+++++++ +++++...++.|.+||.. ++. 
T Consensus       198 v~~~~~~~i~~~d~~~~g--------~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~-g~~-  265 (333)
T 2dg1_A          198 VTETTANRLHRIALEDDG--------VTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GYP-  265 (333)
T ss_dssp             EEEGGGTEEEEEEECTTS--------SSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SCE-
T ss_pred             EEeCCCCeEEEEEecCCC--------cCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC-CCE-
Confidence            666678899999996421        1111        11122 467889999998 777777778899999984 442 


Q ss_pred             EEEEecCCC------CCEEEEEEcCCCCcEEEEEeC
Q 010769          441 CIASRNPKA------GAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       441 ~~~~~~~~~------~~v~~~~~spd~~~llasg~~  470 (502)
                       +..+..+.      ..+.+++|+|++..|++++..
T Consensus       266 -~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          266 -IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             -EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             -EEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence             22332222      268899999998755555443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=5.8e-14  Score=130.58  Aligned_cols=235  Identities=11%  Similarity=0.061  Sum_probs=161.6

Q ss_pred             CCCCCEEE-EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          206 REKGNFMA-VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~~la-~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +++|++++ +.+.++.|.+|+......                           ......+...+.+|++.+++ +++++
T Consensus        32 ~~~g~l~v~~~~~~~~i~~~~~~~~~~---------------------------~~~~~~~~~~p~~i~~~~~g-~l~v~   83 (270)
T 1rwi_B           32 DSAGNVYVTSEGMYGRVVKLATGSTGT---------------------------TVLPFNGLYQPQGLAVDGAG-TVYVT   83 (270)
T ss_dssp             CTTCCEEEEECSSSCEEEEECC--------------------------------EECCCCSCCSCCCEEECTTC-CEEEE
T ss_pred             CCCCCEEEEccCCCCcEEEecCCCccc---------------------------ceEeeCCcCCcceeEECCCC-CEEEE
Confidence            68888777 557788999998653210                           00011233567899999984 46655


Q ss_pred             EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA  364 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~  364 (502)
                      .. ++.|.+||................+.++++.+++ +++++...++.|.+|+..+.............+..+++++++
T Consensus        84 ~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g  161 (270)
T 1rwi_B           84 DF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG  161 (270)
T ss_dssp             ET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC
T ss_pred             cC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC
Confidence            55 8899999987654432222233678999999988 777777778899999765543322111222457889999977


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      . ++++...++.|.+|+....         ........+...+.++++++++ .++++...++.|.+|+......  ...
T Consensus       162 ~-l~v~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~--~~~  228 (270)
T 1rwi_B          162 N-VYVTDTDNNRVVKLEAESN---------NQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS--TVL  228 (270)
T ss_dssp             C-EEEEEGGGTEEEEECTTTC---------CEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCC--EEC
T ss_pred             C-EEEEECCCCEEEEEecCCC---------ceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc--eee
Confidence            5 6666667889999998754         2211122233668899999988 7888877788999999876542  222


Q ss_pred             ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      ...+...+.+++++++|. ++++...++.|++|++...+.
T Consensus       229 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          229 PFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGGS
T ss_pred             ccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCccc
Confidence            223335689999999998 788888899999999876554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.65  E-value=2.7e-14  Score=137.22  Aligned_cols=257  Identities=10%  Similarity=0.104  Sum_probs=172.7

Q ss_pred             cccccccccCCCceEEEEEecCCcc-------------------eeEEEEEecCCCCCCceeeeeccccCCCcceeeeec
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVS-------------------HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLD  200 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~-------------------~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~  200 (502)
                      ..+..++++|+|+++++.+.+....                   .-.|++++...+   .+...-....-..|..+++  
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~--   98 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGKNLFYLPHGLSI--   98 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECTTTCSSEEEEEE--
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCCCccCCceEEEE--
Confidence            4688999999999998887653110                   014777776544   3322111111123455554  


Q ss_pred             CCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCc
Q 010769          201 CPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  280 (502)
Q Consensus       201 ~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  280 (502)
                           +++|+++++.+.++.|++|+.+...  .....++...               ....-.++.....+|+++|+.+.
T Consensus        99 -----d~~g~l~v~d~~~~~v~~~~~~g~~--~~~~~~~~~~---------------~~g~~~~~~~~P~~ia~~~~~g~  156 (329)
T 3fvz_A           99 -----DTDGNYWVTDVALHQVFKLDPHSKE--GPLLILGRSM---------------QPGSDQNHFCQPTDVAVEPSTGA  156 (329)
T ss_dssp             -----CTTSCEEEEETTTTEEEEECTTCSS--CCSEEESBTT---------------BCCCSTTCCSSEEEEEECTTTCC
T ss_pred             -----CCCCCEEEEECCCCEEEEEeCCCCe--EEEEEecccC---------------CCCCCccccCCCcEEEEeCCCCe
Confidence                 7899999999989999999986421  1111221100               00001235567899999994366


Q ss_pred             EEEEEe-cCCcEEEEECCCCeeeEEeccCC----------CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE
Q 010769          281 ILASAS-ADKQVKIWDVAAGKCNLTLEHHT----------DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       281 ~l~sgs-~Dg~v~vwd~~~~~~~~~~~~h~----------~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  349 (502)
                      ++++.+ .++.|++|+ .+++.+..+....          .....|+++|++..++++...++.|++|+..+++......
T Consensus       157 lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          157 VFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             EEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            777776 689999999 5677777764322          3489999999844888888889999999998665443221


Q ss_pred             --eecCCeEEEEeCCCCCCEEEEE-------eCCCeEEEEECCCCCCCCCCCCCCccEEE---ecCCCCeeEEEEcCCCC
Q 010769          350 --AVAADVESLAWDPHAEHSFVVS-------LEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVP  417 (502)
Q Consensus       350 --~~~~~v~~v~~~p~~~~~l~~~-------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~sp~~~  417 (502)
                        .+...+..++|+| + ..+.+.       ..+..|++|+..++         ..+..+   ..+...+.+|+++|+| 
T Consensus       236 ~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g---------~~~~~~~~~~~~~~~p~~ia~~~dG-  303 (329)
T 3fvz_A          236 HASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSG---------EIIDVFKPVRKHFDMPHDIVASEDG-  303 (329)
T ss_dssp             CTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTC---------CEEEEECCSSSCCSSEEEEEECTTS-
T ss_pred             ccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCC---------eEEEEEcCCCCccCCeeEEEECCCC-
Confidence              2345688899998 2 223322       23458999999876         555555   3566779999999998 


Q ss_pred             CEEEEEeCCCcEEEEECCC
Q 010769          418 NLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~  436 (502)
                      .++++...++.|++|++..
T Consensus       304 ~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          304 TVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEESSSCCEEEEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCc
Confidence            8999999999999999754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.65  E-value=9e-14  Score=135.31  Aligned_cols=263  Identities=14%  Similarity=0.147  Sum_probs=169.3

Q ss_pred             cccccCCCceEEEEEec------CCcceeEEEEEecCCCCCCceeeeeccccC-------CCcceeeeecCCCCCCCCCC
Q 010769          144 DMTINPNDAVIVCARNE------DDVSHLEVYILEESDGGDPNLYVHHHIIIP-------AFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~------~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~w~~~~~~~s~~~~  210 (502)
                      .+.|+|++++|.++...      +. ..-.|.+|+....   .+  .....++       ..|..+.+       +|+|+
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~-~~~~v~v~d~~t~---~~--~~~i~~~~~~~~~g~~p~~i~~-------spdg~  120 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGK-RSDVVEVWDADKL---TF--EKEISLPPKRVQGLNYDGLFRQ-------TTDGK  120 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSC-EEEEEEEEETTTC---CE--EEEEEECTTBCCBCCCGGGEEE-------CTTSS
T ss_pred             ceEECCCCCEEEEEEecccccccCC-CCCEEEEEECcCC---cE--EEEEEcCccccccCCCcceEEE-------CCCCC
Confidence            78999999999988641      00 0114555555432   21  1112111       33445544       89999


Q ss_pred             EEEEecC--CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          211 FMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       211 ~la~g~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      +|+++..  ++.|.+||+.+...+.                           .+..+ .....+.+.|.+...+++.+.|
T Consensus       121 ~l~v~n~~~~~~v~v~d~~~~~~~~---------------------------~~i~~-~~~~~v~~~p~~~~~~~~~~~d  172 (361)
T 2oiz_A          121 FIVLQNASPATSIGIVDVAKGDYVE---------------------------DVTAA-AGCWSVIPQPNRPRSFMTICGD  172 (361)
T ss_dssp             EEEEEEESSSEEEEEEETTTTEEEE---------------------------EEGGG-TTEEEEEECTTSSSEEEEEETT
T ss_pred             EEEEECCCCCCeEEEEECCCCcEEE---------------------------EEecC-CCcceeEEcCCCCeeEEEECCC
Confidence            9999874  5799999997532111                           00011 1123356778766788899999


Q ss_pred             CcEEEEECCC-CeeeE------EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce-Ee----------
Q 010769          289 KQVKIWDVAA-GKCNL------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WA----------  350 (502)
Q Consensus       289 g~v~vwd~~~-~~~~~------~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~----------  350 (502)
                      |.+.+|++.. ++...      .+..+..++ .+.+++++ ..++..+.++.|.++|+......... +.          
T Consensus       173 g~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~  250 (361)
T 2oiz_A          173 GGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN  250 (361)
T ss_dssp             SSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred             CcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence            9999999865 55441      122222222 23345666 55666778899999999755432111 11          


Q ss_pred             -ecCCeEEEEeCCCCCCEEEEEe----------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCE
Q 010769          351 -VAADVESLAWDPHAEHSFVVSL----------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       351 -~~~~v~~v~~~p~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                       .......++|+|++..++++..          ..+.|.+||+.+.         +.+.++..+.  +.+++|+|++ ++
T Consensus       251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------~~v~~i~~~~--p~~ia~spdg-~~  318 (361)
T 2oiz_A          251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------QRVARIPGRD--ALSMTIDQQR-NL  318 (361)
T ss_dssp             CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------EEEEEEECTT--CCEEEEETTT-TE
T ss_pred             cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------cEEEEEecCC--eeEEEECCCC-CE
Confidence             0112223789998775444443          1358999999986         7778888777  8999999998 68


Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC
Q 010769          420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP  462 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~  462 (502)
                      |++++. +.|.+||+.++++..+..+..+......++++|+|.
T Consensus       319 l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          319 MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            887776 999999999984346666656667788999999985

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=4.5e-14  Score=149.95  Aligned_cols=284  Identities=9%  Similarity=-0.016  Sum_probs=178.9

Q ss_pred             cCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCC---CcceeeeecCCCCCCCCCCEEE-----EecCCC
Q 010769          148 NPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA---FPLCMAWLDCPLKDREKGNFMA-----VGSMEP  219 (502)
Q Consensus       148 ~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~w~~~~~~~s~~~~~la-----~g~~dg  219 (502)
                      +|+|..++....++....-.+|..+...+....|. ..+.....   ......|       ||+|++||     .|+.+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~-d~~~~a~~~~~~~~~~~~-------SPDG~~la~~~~~~G~~~~  147 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLL-DPNGWSKDGTVSLGTWAV-------SWDGKKVAFAQKPNAADEA  147 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEE-CGGGSSSSSCEEEEEEEE-------CTTSSEEEEEEEETTCSCC
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEE-chHHhccCCCEEEEEEEE-------CCCCCEEEEEECCCCCceE
Confidence            48899888888766433457888775433111221 11110000   0123333       89999999     455557


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccc--eeeEEecCCCCcEEEEEecCCc-------
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS--VLGLAWNKEFRNILASASADKQ-------  290 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~~l~sgs~Dg~-------  290 (502)
                      .|++||+.++..+..                             .+...  ...++|+|++ ..|+.++.+..       
T Consensus       148 ~i~v~dl~tg~~~~~-----------------------------~~~~~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          148 VLHVIDVDSGEWSKV-----------------------------DVIEGGKYATPKWTPDS-KGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             EEEEEETTTCCBCSS-----------------------------CCBSCCTTCCCEECTTS-SEEEEEECCCCTTSCGGG
T ss_pred             EEEEEECCCCCCcCC-----------------------------cccCcccccceEEecCC-CEEEEEEecCCCCCcccc
Confidence            899999986543210                             01111  2678999995 57888887766       


Q ss_pred             ------EEEEECCCCe----eeEEeccCCCCeEEEEEcCCCCcEEEEEECCC----cEEEEeCCCCCCccceEeecCCeE
Q 010769          291 ------VKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMKDARISTHSGFKWAVAADVE  356 (502)
Q Consensus       291 ------v~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~  356 (502)
                            |++|++.+++    ++.....|...+.++.|+|+| ++|+.++.++    .|.+|+..++.. .........+.
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~  275 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKY  275 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCE
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceE
Confidence                  9999998876    333334466788999999999 5566555444    566666544432 22344455566


Q ss_pred             EEEeCCCCCCEEEEEe---CCCeEEEEECCCCCCCCCCCCCCccEEEecC--CCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769          357 SLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      ...| +++. +++.+.   .++.|.+||+.++..       .....+..|  ...+..++|+ .+ .++++...++..+|
T Consensus       276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR-------ASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEV  344 (695)
T ss_dssp             EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG-------GGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEE
T ss_pred             EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc-------cCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEE
Confidence            6667 5566 555554   358899999876510       112344333  4457888888 34 78889999998888


Q ss_pred             EECC-CCCeeEEEEecCC-CCCEEEEEEcCCCCcEEEEEeC---CCcEEEEECCCCcc
Q 010769          432 WDLS-NNQPSCIASRNPK-AGAVFSVAFSEDSPFVLAIGGS---KGKLEIWDTLSDAG  484 (502)
Q Consensus       432 wd~~-~~~~~~~~~~~~~-~~~v~~~~~spd~~~llasg~~---dg~i~vwd~~~~~~  484 (502)
                      |.+. .++  ....+..+ .+.+..++++|++..++++.++   .++|++||+.+++.
T Consensus       345 ~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          345 RVATLKGK--PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEETTCC--EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEeCCCC--eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            7654 233  23344433 5678889999999765544443   36799999988763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.64  E-value=8.5e-14  Score=134.52  Aligned_cols=264  Identities=12%  Similarity=0.095  Sum_probs=164.9

Q ss_pred             cccccccccCCCceEEEEEecC----CcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          140 EDLEDMTINPNDAVIVCARNED----DVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~----~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..+..+++  +|+.|+......    +...-.||+++....   .....      ....+..|       ||+|++||.+
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~---~~~~l------~~~~~~~~-------SpDg~~la~~   76 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN---ARRFI------ENATMPRI-------SPDGKKIAFM   76 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC---CEEEE------ESCEEEEE-------CTTSSEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC---ceEEc------ccCCCeEE-------CCCCCEEEEE
Confidence            45667777  888887764321    112347888876654   21111      22244555       8999999987


Q ss_pred             cCC---C--cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec---
Q 010769          216 SME---P--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA---  287 (502)
Q Consensus       216 ~~d---g--~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~---  287 (502)
                      +.+   +  .|.+|++..+...                            .+..+.. +.+++|+|++. .|+.++.   
T Consensus        77 ~~~~~~~~~~l~~~~~~~g~~~----------------------------~l~~~~~-~~~~~wspdg~-~l~~~~~~~~  126 (347)
T 2gop_A           77 RANEEKKVSEIWVADLETLSSK----------------------------KILEAKN-IRSLEWNEDSR-KLLIVGFKRR  126 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTEEE----------------------------EEEEESE-EEEEEECTTSS-EEEEEEECCC
T ss_pred             EeccCCCcceEEEEECCCCceE----------------------------EEEcCCC-ccceeECCCCC-EEEEEEccCC
Confidence            654   3  3777777542110                            0111223 89999999954 6666553   


Q ss_pred             ------------------------CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC-------cEEE
Q 010769          288 ------------------------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-------SVVM  336 (502)
Q Consensus       288 ------------------------Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-------~i~v  336 (502)
                                              ...|.+||+.+++.+..+.. . .+..+.|+|++  +++++..++       ...|
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l  202 (347)
T 2gop_A          127 EDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDI  202 (347)
T ss_dssp             C---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEE
T ss_pred             CcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccE
Confidence                                    25799999998887455554 3 78899999998  666666542       3445


Q ss_pred             EeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC-------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeE
Q 010769          337 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  409 (502)
Q Consensus       337 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~  409 (502)
                      |.+.++. ....... ..+..+  +|++..+++++..       ...|.+||  ++         ........|...+..
T Consensus       203 ~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---------~~~~l~~~~~~~~~~  267 (347)
T 2gop_A          203 YIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK---------EVMGILDEVDRGVGQ  267 (347)
T ss_dssp             EEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS---------CEEESSTTCCSEEEE
T ss_pred             EEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC---------ceEeccccCCcccCC
Confidence            5444333 2222333 444443  8988755455433       24688888  32         222223445677876


Q ss_pred             -EEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcE-EEEECC
Q 010769          410 -ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL-EIWDTL  480 (502)
Q Consensus       410 -l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i-~vwd~~  480 (502)
                       +.|+ ++  ++++++.++.++|| +.+++.   ..+..+.+.|.+++|+|  . ++++++.++.. .||.+.
T Consensus       268 ~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~---~~~~~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          268 AKIKD-GK--VYFTLFEEGSVNLY-IWDGEI---KPIAKGRHWIMGFDVDE--I-VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEET-TE--EEEEEEETTEEEEE-EESSSE---EEEECSSSEEEEEEESS--S-EEEEEECSSSCCEEEEES
T ss_pred             ccEEc-Cc--EEEEEecCCcEEEE-EcCCce---EEEecCCCeEEeeeeeC--c-EEEEEcCCCChHHheEeC
Confidence             8998 64  88889999999999 875543   22333467899999999  4 56777777654 777776

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.63  E-value=5.7e-15  Score=145.31  Aligned_cols=234  Identities=9%  Similarity=0.014  Sum_probs=150.2

Q ss_pred             CCCCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC
Q 010769          203 LKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR  279 (502)
Q Consensus       203 ~~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  279 (502)
                      ++|+|+|++||.....   ..|.+|++..+...                           ....++......+.|+|+ +
T Consensus        41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~---------------------------~l~~~~~~~~~~~~~spd-g   92 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV---------------------------QLTEGKGDNTFGGFISTD-E   92 (396)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE---------------------------ECCCSSCBCTTTCEECTT-S
T ss_pred             CcCCCCCCEEEEEEecCCCceEEEEECCCCcEE---------------------------EeecCCCCccccceECCC-C
Confidence            3448999998877543   36778887643210                           011122223344789999 5


Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEE-------------------EEEcCCCCcEEEEE-----ECCCcEE
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA-------------------VAWNHHSPQILLSG-----SFDRSVV  335 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~-------------------l~~~~~~~~~l~s~-----~~dg~i~  335 (502)
                      ..|+.++.++.|++|++.+++....+..+......                   +.|+|++ ..++.+     ..+..|.
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~  171 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLI  171 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEE
Confidence            58888888889999999988766555544443222                   3467776 333332     4567899


Q ss_pred             EEeCCCCCCccceEeecCCeEEEEeCC-CCCCEEEEEeCC------CeEEEEECCCCCCCCCCCCCCccEEEecC--CCC
Q 010769          336 MKDARISTHSGFKWAVAADVESLAWDP-HAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKA  406 (502)
Q Consensus       336 vwd~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~  406 (502)
                      +||+.++.... .......+..+.|+| ++. .++..+.+      ..|.+|++...          ....+..+  ...
T Consensus       172 ~~d~~~g~~~~-~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~----------~~~~l~~~~~~~~  239 (396)
T 3c5m_A          172 KVDIETGELEV-IHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGS----------NVRKIKEHAEGES  239 (396)
T ss_dssp             EEETTTCCEEE-EEEESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSC----------CCEESSCCCTTEE
T ss_pred             EEECCCCcEEe-eccCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCC----------ceeEeeccCCCcc
Confidence            99998766543 345667789999999 565 34443333      36888888654          12222222  235


Q ss_pred             eeEEEEcCCCCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcC-CCCcEEEEEe-----------
Q 010769          407 VCTISYNPLVPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE-DSPFVLAIGG-----------  469 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp-d~~~llasg~-----------  469 (502)
                      +..++|+|++ +.|+.++.+     +.|++||+.+++...+.....    .. +.|+| ++++ |++++           
T Consensus       240 ~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~-l~~~~~~~p~~~~~~~  312 (396)
T 3c5m_A          240 CTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSL-MVGDGCDAPVDVADAD  312 (396)
T ss_dssp             EEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSE-EEEEECCC--------
T ss_pred             ccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCce-EEEecCCcceeecccc
Confidence            7889999998 555554433     449999999887544443322    33 89999 9994 55544           


Q ss_pred             -----CCCcEEEEECCCCcc
Q 010769          470 -----SKGKLEIWDTLSDAG  484 (502)
Q Consensus       470 -----~dg~i~vwd~~~~~~  484 (502)
                           .++.|++||+.++..
T Consensus       313 ~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          313 SYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             --CCCCCCEEEEEETTTTBC
T ss_pred             ccccCCCCcEEEEecccCce
Confidence                 346899999987764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.63  E-value=2.4e-12  Score=121.19  Aligned_cols=281  Identities=10%  Similarity=0.085  Sum_probs=183.7

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d  218 (502)
                      ...+.++.+.|+|+++++....+     .|+.|+.. .   .+...........|.++.+       +++|+++++...+
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~-----~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~-------~~~g~l~v~~~~~   77 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKAN-----MISCINLD-G---KITEYPLPTPDAKVMCLTI-------SSDGEVWFTENAA   77 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTT-----EEEEECTT-C---CEEEEECSSTTCCEEEEEE-------CTTSCEEEEETTT
T ss_pred             CCCccceEECCCCCEEEEecCCC-----cEEEEcCC-C---CeEEecCCcccCceeeEEE-------CCCCCEEEeCCCC
Confidence            35688999999999887765444     67777655 3   2222111111234455544       6788888887778


Q ss_pred             CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~  298 (502)
                      +.|..|+... . ...                         .....+...+.++++.++ +.++++...++.|.+||. +
T Consensus        78 ~~i~~~~~~g-~-~~~-------------------------~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~  128 (299)
T 2z2n_A           78 NKIGRITKKG-I-IKE-------------------------YTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-D  128 (299)
T ss_dssp             TEEEEECTTS-C-EEE-------------------------EECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-T
T ss_pred             CeEEEECCCC-c-EEE-------------------------EeCCCcCCCceeeEECCC-CCEEEEecCCceEEEECC-C
Confidence            8899998751 1 100                         001123456889999998 457777767889999998 5


Q ss_pred             CeeeE-EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          299 GKCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       299 ~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      ++... .+..+...+.++++.+++ .++++...++.|..|+. ++....... .....+..+++++++. ++++....+.
T Consensus       129 g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~  205 (299)
T 2z2n_A          129 GKIREYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNK  205 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTE
T ss_pred             CCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCce
Confidence            54433 223345678999999998 77777767789999998 444322111 1234578999999765 5666666889


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEE
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      |.+|+. ++.        ........+...+.++++.+++ .++++...++.|.+||. +++. .......+...+.+++
T Consensus       206 i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~  273 (299)
T 2z2n_A          206 IGRITT-SGE--------ITEFKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGIC  273 (299)
T ss_dssp             EEEECT-TCC--------EEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEE
T ss_pred             EEEECC-CCc--------EEEEECCCCCCCceeEEECCCC-CEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEE
Confidence            999998 541        1122233455678999999987 66666667789999998 3432 2233344456799999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          457 FSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       457 ~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      + +++. ++++. ..+.|..++..++
T Consensus       274 ~-~~g~-l~v~~-~~~~l~~~~~~~~  296 (299)
T 2z2n_A          274 F-DGET-IWFAM-ECDKIGKLTLIKD  296 (299)
T ss_dssp             E-CSSC-EEEEE-TTTEEEEEEEC--
T ss_pred             e-cCCC-EEEEe-cCCcEEEEEcCcc
Confidence            9 8887 45543 3567888887664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.60  E-value=6.7e-13  Score=124.58  Aligned_cols=242  Identities=12%  Similarity=0.130  Sum_probs=160.9

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeecc----ccCCCcceeeeecCCCCCCCCCCEEE
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI----IIPAFPLCMAWLDCPLKDREKGNFMA  213 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~w~~~~~~~s~~~~~la  213 (502)
                      +-....+++++|+++++++...++     .|+.|+....   .+......    .....|.++++.      .+++++++
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~-----~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~------~~~g~l~v   93 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNH-----RIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVV------RNSGDIIV   93 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGT-----EEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEE------TTTTEEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCC-----EEEEECCCCc---EEEEecccCCCcccccCceEEEEE------cCCCeEEE
Confidence            345678899999999888877665     6777765432   22111100    001234454442      35677777


Q ss_pred             EecC-CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEE
Q 010769          214 VGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK  292 (502)
Q Consensus       214 ~g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~  292 (502)
                      +... ++.|++|+.+. ..+.   .                       ....+...+.+|++.+++ +++++.+.++.|.
T Consensus        94 ~~~~~~~~i~~~d~~g-~~~~---~-----------------------~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~  145 (286)
T 1q7f_A           94 TERSPTHQIQIYNQYG-QFVR---K-----------------------FGATILQHPRGVTVDNKG-RIIVVECKVMRVI  145 (286)
T ss_dssp             EECGGGCEEEEECTTS-CEEE---E-----------------------ECTTTCSCEEEEEECTTS-CEEEEETTTTEEE
T ss_pred             EcCCCCCEEEEECCCC-cEEE---E-----------------------ecCccCCCceEEEEeCCC-CEEEEECCCCEEE
Confidence            6643 78999999432 1110   0                       011244568999999984 5777777889999


Q ss_pred             EEECCCCeeeEEec--cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec---CCeEEEEeCCCCCCE
Q 010769          293 IWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA---ADVESLAWDPHAEHS  367 (502)
Q Consensus       293 vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~v~~v~~~p~~~~~  367 (502)
                      +|+.. ++.+..+.  .+...+.++++++++ +++++...++.|++|+.... ... .....   ..+..+++++++. +
T Consensus       146 ~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~~-~~~~~g~~~~p~~i~~d~~G~-l  220 (286)
T 1q7f_A          146 IFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ-YLR-QIGGEGITNYPIGVGINSNGE-I  220 (286)
T ss_dssp             EECTT-SCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-EEE-EESCTTTSCSEEEEEECTTCC-E
T ss_pred             EEcCC-CCEEEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCC-EEE-EEccCCccCCCcEEEECCCCC-E
Confidence            99964 56565553  345678999999998 77777778999999997542 221 22222   4688999999874 6


Q ss_pred             EEEEeCCC-eEEEEECCCCCCCCCCCCCCccEEEecCC--CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          368 FVVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       368 l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      +++...++ .|.+|+...          ..+..+..+.  ..+.+++++|++ .++++ +.++.|++|++....
T Consensus       221 ~v~~~~~~~~i~~~~~~g----------~~~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          221 LIADNHNNFNLTIFTQDG----------QLISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEEECSSSCEEEEECTTS----------CEEEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEEECSCCC
T ss_pred             EEEeCCCCEEEEEECCCC----------CEEEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEEEccccc
Confidence            77776675 999999542          4455555443  347799999988 66666 579999999986644

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.60  E-value=5.3e-13  Score=136.84  Aligned_cols=311  Identities=10%  Similarity=0.040  Sum_probs=197.7

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCC----CCCCEEEEec
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR----EKGNFMAVGS  216 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s----~~~~~la~g~  216 (502)
                      .+..+.|+|++++|.+++.++     .|++|+....   .+.....+.....|..+.+       +    |+|+++++++
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg-----~V~viD~~~~---t~~~v~~i~~G~~P~~ia~-------s~~~~pDGk~l~v~n  262 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDG-----KVNMIDLWMK---EPTTVAEIKIGSEARSIET-------SKMEGWEDKYAIAGA  262 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTS-----EEEEEETTSS---SCCEEEEEECCSEEEEEEE-------CCSTTCTTTEEEEEE
T ss_pred             CccceEECCCCCEEEEEcCCC-----eEEEEECCCC---CCcEeEEEecCCCCceeEE-------ccccCCCCCEEEEEE
Confidence            345789999999999987655     6777776311   1112233344444555555       6    6999988876


Q ss_pred             CC-CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccc-ceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          217 ME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD-SVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       217 ~d-g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      .. +.|.|+|..+.+.+....+.+.                 .......|.. .+..+..++++..++++....|.|.++
T Consensus       263 ~~~~~v~ViD~~t~~~~~~i~~~~~-----------------~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v  325 (567)
T 1qks_A          263 YWPPQYVIMDGETLEPKKIQSTRGM-----------------TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  325 (567)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCEE-----------------CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             ccCCeEEEEECCCCcEEEEEecccc-----------------ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence            55 8999999876544332221110                 0000011333 677888888877677777788999999


Q ss_pred             ECCCCee--eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee-c---CCeEEEE-eCCCCCCE
Q 010769          295 DVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-A---ADVESLA-WDPHAEHS  367 (502)
Q Consensus       295 d~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~---~~v~~v~-~~p~~~~~  367 (502)
                      |....+.  +..+. .......+.|+|++..++++...++.|.++|+.+.+..... .. .   .+-..+. ++|++..+
T Consensus       326 d~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i-~vgg~~Phpg~g~~~~~p~~g~v  403 (567)
T 1qks_A          326 DYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE-DTGGQTPHPGRGANFVHPTFGPV  403 (567)
T ss_dssp             ETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE-ECSSSSBCCTTCEEEEETTTEEE
T ss_pred             ecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE-eccCcCCCCccceeeECCCCCcE
Confidence            9887542  22332 34567789999999545555657899999999987654322 22 1   1101222 57765545


Q ss_pred             EEEEe-CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-------CCcEEEEECCCC--
Q 010769          368 FVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-------DKMVKLWDLSNN--  437 (502)
Q Consensus       368 l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-------dg~i~vwd~~~~--  437 (502)
                      ++++. .++.|.++|..+.....  ...+.+.++......-..+.++|++ ++|.+...       .++|.|+|+.+.  
T Consensus       404 ~~t~~~g~~~Vsvid~~~~~~~~--~~~kvv~~i~~~g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~  480 (567)
T 1qks_A          404 WATSHMGDDSVALIGTDPEGHPD--NAWKILDSFPALGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAMTG  480 (567)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTT--TBTSEEEEEECSCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCC
T ss_pred             EEeCCCCCCeEEEecCCCCCCcc--ccCEEEEEEecCCCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcccc
Confidence            55554 56899999998732110  0025566666554444568899998 66666542       358999999876  


Q ss_pred             ---CeeEEEEec--------CCCCCEEEEEEcCCCCcEEEEEe----CCCcEEEEECCCCccccccc
Q 010769          438 ---QPSCIASRN--------PKAGAVFSVAFSEDSPFVLAIGG----SKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       438 ---~~~~~~~~~--------~~~~~v~~~~~spd~~~llasg~----~dg~i~vwd~~~~~~~~~~~  489 (502)
                         .. ....+.        .....+..+.|+|+|.+++++..    .++.|.|+|..+.+.+.++-
T Consensus       481 ~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          481 DGSDP-EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             SSSCC-CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             cccCC-CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence               21 111221        12357899999999998777754    36899999999998776554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.58  E-value=5.5e-14  Score=148.42  Aligned_cols=249  Identities=10%  Similarity=-0.031  Sum_probs=151.0

Q ss_pred             ccccc--CCCce-EEEEEecCCcceeEEEEEecC--C-CCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          144 DMTIN--PNDAV-IVCARNEDDVSHLEVYILEES--D-GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       144 ~~~~~--p~~~~-l~~~~~~~~~~~l~v~~~~~~--~-~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      .+.|+  |+|+. |+.+...    ..+||.++..  . .....+.............++.|       +|+|++|++++.
T Consensus        81 ~~~~~~SPDg~~~la~~~~~----~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~-------spDg~~l~~~~~  149 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFG----DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL-------LPERGEVWCMAE  149 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTT----TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE-------ETTTTEEEEEEE
T ss_pred             cceeeeecCCCeEEEEEECC----CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE-------CCCCCEEEEEEe
Confidence            44454  99998 7766533    2478988865  2 21111211100000111234555       899999999887


Q ss_pred             C----------CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccC-CcccceeeEEecCCCCcEEEEEe
Q 010769          218 E----------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG-SHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       218 d----------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      +          ..|++|++.......                      ......+. .+...+..++|+|++ .+|+.++
T Consensus       150 ~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~  206 (662)
T 3azo_A          150 EFTGEGPSDVRRFLAAVPLDGSAAAD----------------------RSAVRELSDDAHRFVTGPRLSPDG-RQAVWLA  206 (662)
T ss_dssp             EECSSSTTCEEEEEEEEETTSTTTTC----------------------GGGSEESSCSCSSEECCCEECTTS-SEEEEEE
T ss_pred             cccCCCCCCceeEEEEEECCCCcccc----------------------CCceeEEEecCCCcccCceECCCC-CEEEEEE
Confidence            6          589999986410000                      00011122 345678899999995 5777776


Q ss_pred             cC--------CcEEEEECC-CC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEeCCCCCCccceEeec
Q 010769          287 AD--------KQVKIWDVA-AG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       287 ~D--------g~v~vwd~~-~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~  352 (502)
                      .+        ..|++||+. ++   +......+|...+..+.|+|+| ++++++..++  .|.+|++.++........+.
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~  285 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAATQLCRREE  285 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEEESSCCSS
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCceeecccccc
Confidence            55        379999999 57   4444445567889999999999 5888888888  56666665544322111111


Q ss_pred             C--------CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEE-EEcCCCCCEEEE-
Q 010769          353 A--------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-SYNPLVPNLLAT-  422 (502)
Q Consensus       353 ~--------~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~sp~~~~~l~t-  422 (502)
                      .        .+.+++|+|++. +++++.. +.+++|.+...        ...+..+..|...+..+ ++++  ..++++ 
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~--------~~~~~~l~~~~~~~~~~~s~~~--~~~~~~~  353 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPE--------SGELVDAAGPWTEWAATLTVSG--TRAVGVA  353 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETT--------TTEEEECCSSCCEEEEEEEEET--TEEEEEE
T ss_pred             cccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEEECC--------CCcEEEecCCCCeEEEEEecCC--CEEEEEE
Confidence            1        146788888765 7888888 99999944322        12356667777777777 5544  344444 


Q ss_pred             EeCCC--cEEEEECCCCCe
Q 010769          423 GSTDK--MVKLWDLSNNQP  439 (502)
Q Consensus       423 ~s~dg--~i~vwd~~~~~~  439 (502)
                      ++.+.  .|.+||+.+++.
T Consensus       354 ~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          354 ASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             EETTEEEEEEEEETTTCCE
T ss_pred             cCCCCCCEEEEEECCCCce
Confidence            44443  466667777764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.57  E-value=4.3e-13  Score=126.67  Aligned_cols=227  Identities=10%  Similarity=0.057  Sum_probs=153.8

Q ss_pred             CCCCC-EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          206 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +|+++ +++++..++.|.+|+....  ..                           .+..+...+.+++++++ +.++++
T Consensus        36 d~~g~~l~~~~~~~~~i~~~~~~~~--~~---------------------------~~~~~~~~~~~l~~~~d-g~l~v~   85 (296)
T 3e5z_A           36 VPARSAVIFSDVRQNRTWAWSDDGQ--LS---------------------------PEMHPSHHQNGHCLNKQ-GHLIAC   85 (296)
T ss_dssp             EGGGTEEEEEEGGGTEEEEEETTSC--EE---------------------------EEESSCSSEEEEEECTT-CCEEEE
T ss_pred             eCCCCEEEEEeCCCCEEEEEECCCC--eE---------------------------EEECCCCCcceeeECCC-CcEEEE
Confidence            68888 7888888999999998742  11                           11235567899999999 457777


Q ss_pred             EecCCcEEEEECCCCeeeEEeccC----CCCeEEEEEcCCCCcEEEEE----E-------------CCCcEEEEeCCCCC
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEHH----TDKVQAVAWNHHSPQILLSG----S-------------FDRSVVMKDARIST  343 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~----~-------------~dg~i~vwd~~~~~  343 (502)
                      ...++.|.+||..+++........    ...+..++++|+| +++++.    +             ..+.|..++.. + 
T Consensus        86 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-  162 (296)
T 3e5z_A           86 SHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-  162 (296)
T ss_dssp             ETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-
T ss_pred             ecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-C-
Confidence            766789999999888754433221    2356789999999 777763    2             13455555554 2 


Q ss_pred             CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCc---cEEEecCCCCeeEEEEcCCCCCEE
Q 010769          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS---SFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ..............++|+|++.. +++.+.++.|.+|++...        ...   ...+..+...+.+++++++| +++
T Consensus       163 ~~~~~~~~~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~~--------g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~  232 (296)
T 3e5z_A          163 TLSAPIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNAR--------GETEYQGVHFTVEPGKTDGLRVDAGG-LIW  232 (296)
T ss_dssp             CEEEEECCCSSEEEEEECTTSCE-EEEETTTTEEEEEEECSS--------SCEEEEEEEECCSSSCCCSEEEBTTS-CEE
T ss_pred             CEEEeecCCCCCccEEECCCCCE-EEEeCCCCeEEEEEECCC--------CcCcCCCeEeeCCCCCCCeEEECCCC-CEE
Confidence            22223344556789999999874 477788899999999732        122   12223355667899999998 665


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEE-cCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF-SEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ++.  ++.|.+|+.. ++  .+..+..+.. +.+++| .|++.. |.+++.+ .+.-+++.+..
T Consensus       233 v~~--~~~v~~~~~~-g~--~~~~~~~~~~-~~~~~f~~~d~~~-L~v~t~~-~l~~~~~~~~~  288 (296)
T 3e5z_A          233 ASA--GDGVHVLTPD-GD--ELGRVLTPQT-TSNLCFGGPEGRT-LYMTVST-EFWSIETNVRG  288 (296)
T ss_dssp             EEE--TTEEEEECTT-SC--EEEEEECSSC-CCEEEEESTTSCE-EEEEETT-EEEEEECSCCB
T ss_pred             EEc--CCeEEEECCC-CC--EEEEEECCCC-ceeEEEECCCCCE-EEEEcCC-eEEEEEccccc
Confidence            555  7889999986 44  3444555555 889999 688885 5555555 45556665544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=2.8e-12  Score=121.87  Aligned_cols=248  Identities=10%  Similarity=0.079  Sum_probs=161.8

Q ss_pred             cceeeeecCCCCCCCCCCEEEE-------ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCc
Q 010769          193 PLCMAWLDCPLKDREKGNFMAV-------GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH  265 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~-------g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h  265 (502)
                      |.++.|       +++++++++       ++.++.|.+|+....... ...                      .....++
T Consensus        20 ~~~~~~-------~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~----------------------~~~~~~~   69 (314)
T 1pjx_A           20 AEGPVF-------DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VIC----------------------KPEVNGY   69 (314)
T ss_dssp             CEEEEE-------CTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEE----------------------CCEETTE
T ss_pred             ccCceE-------CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEE----------------------ecccCCC
Confidence            456666       678888888       677899999997643211 000                      0001134


Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEE-ecc----CCCCeEEEEEcCCCCcEEEEEECC---------
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT-LEH----HTDKVQAVAWNHHSPQILLSGSFD---------  331 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~-~~~----h~~~v~~l~~~~~~~~~l~s~~~d---------  331 (502)
                      ...+.++++.++++++++ ++..+.|.+||.. ++.... ...    ....+.++++.+++ +++++...+         
T Consensus        70 ~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           70 GGIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             ECCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCB
T ss_pred             CCCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccc
Confidence            567899999998333444 4444579999988 765433 221    12358899999998 766666544         


Q ss_pred             ------CcEEEEeCCCCCCccceEeecCCeEEEEeC----CCCCCEEEEEeCCCeEEEEECC-CCCCCCCCCCCCccEEE
Q 010769          332 ------RSVVMKDARISTHSGFKWAVAADVESLAWD----PHAEHSFVVSLEDGTIKGFDIR-TAKSDPDSTSQQSSFTL  400 (502)
Q Consensus       332 ------g~i~vwd~~~~~~~~~~~~~~~~v~~v~~~----p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~  400 (502)
                            +.|..|+.. ++. ............++|+    |++..++++...++.|.+|++. .+....    ......+
T Consensus       147 ~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~----~~~~~~~  220 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN----KKVWGHI  220 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE----EEEEEEC
T ss_pred             cccCCCCeEEEECCC-CCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc----ceEEEEC
Confidence                  567777765 332 2233344567889999    9876455555678999999976 221000    0112223


Q ss_pred             ecCC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          401 HAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       401 ~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      ..+. ..+..++++++| +++++...++.|.+||..+++...  .+..+...+.+++|+|++.+++++...++.|..|++
T Consensus       221 ~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~--~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          221 PGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKM--RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSE--EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeE--EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            3333 567889999988 788887788899999998665322  233445679999999999866666666789999998


Q ss_pred             CCC
Q 010769          480 LSD  482 (502)
Q Consensus       480 ~~~  482 (502)
                      ...
T Consensus       298 ~~~  300 (314)
T 1pjx_A          298 QRN  300 (314)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.55  E-value=9.4e-13  Score=126.46  Aligned_cols=236  Identities=8%  Similarity=0.035  Sum_probs=158.8

Q ss_pred             CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      |++++..++..+.++.++.|.-.                              ....+..+...+.+++|+++ +.++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~-g~l~~~   61 (333)
T 2dg1_A           13 YSGKSNSAVPIISESELQTITAE------------------------------PWLEISKKGLQLEGLNFDRQ-GQLFLL   61 (333)
T ss_dssp             SCGGGGCSSCCCCGGGSCEEECE------------------------------EEEEEESSCCCEEEEEECTT-SCEEEE
T ss_pred             ecCCccceeEEeecccCcccccc------------------------------eeEEEeccCccccCcEECCC-CCEEEE
Confidence            36777777777778888888321                              11112245566789999998 457778


Q ss_pred             EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC----CcEEEEeCCCCCCccceE--eecCCeEEE
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARISTHSGFKW--AVAADVESL  358 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~v  358 (502)
                      +..++.|.+||..+++....+..+...+.+++|++++ +++++...+    +.|.+||..+........  .....+..+
T Consensus        62 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i  140 (333)
T 2dg1_A           62 DVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDM  140 (333)
T ss_dssp             ETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEE
T ss_pred             ECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccce
Confidence            8889999999998887665444566789999999998 777776666    689999988765432111  123468899


Q ss_pred             EeCCCCCCEEEEEeC------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          359 AWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       359 ~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      +++|++. ++++...      .+.|..|+..+.          .+..+..+...+.+++|+|++..++++.+.++.|.+|
T Consensus       141 ~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~  209 (333)
T 2dg1_A          141 VFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR----------TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRI  209 (333)
T ss_dssp             EECTTSC-EEEEECCCBTTBCCEEEEEECTTSC----------CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred             EECCCCC-EEEEeccccccCCCceEEEEeCCCC----------EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEE
Confidence            9999875 4554432      356666665543          1222323334578999999983355566668899999


Q ss_pred             ECCC-CCeeE------EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          433 DLSN-NQPSC------IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       433 d~~~-~~~~~------~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      ++.. +....      ......+ ..+..++++++|. ++++...++.|.+|+. .++.+.
T Consensus       210 d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~-~g~~~~  267 (333)
T 2dg1_A          210 ALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIG  267 (333)
T ss_dssp             EECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEE
T ss_pred             EecCCCcCcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECC-CCCEEE
Confidence            9964 22111      1112222 4678899999998 5776667789999998 455443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.55  E-value=5.8e-12  Score=129.10  Aligned_cols=279  Identities=12%  Similarity=0.066  Sum_probs=182.3

Q ss_pred             CCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCC-
Q 010769          149 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD-  227 (502)
Q Consensus       149 p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~-  227 (502)
                      |.+.++++...++     .|++++....   .+.  ..+.+...|.++.+       +|+|++|++++.++.|.+||+. 
T Consensus       165 ~~~~~~V~~~~~~-----~V~viD~~t~---~v~--~~i~~g~~p~~v~~-------SpDGr~lyv~~~dg~V~viD~~~  227 (567)
T 1qks_A          165 LENLFSVTLRDAG-----QIALIDGSTY---EIK--TVLDTGYAVHISRL-------SASGRYLFVIGRDGKVNMIDLWM  227 (567)
T ss_dssp             GGGEEEEEETTTT-----EEEEEETTTC---CEE--EEEECSSCEEEEEE-------CTTSCEEEEEETTSEEEEEETTS
T ss_pred             CCceEEEEeCCCC-----eEEEEECCCC---eEE--EEEeCCCCccceEE-------CCCCCEEEEEcCCCeEEEEECCC
Confidence            4344445554444     7777876654   222  22233334444444       8999999999999999999985 


Q ss_pred             -CCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec----CCCCcEEEEEecCCcEEEEECCCCeee
Q 010769          228 -VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN----KEFRNILASASADKQVKIWDVAAGKCN  302 (502)
Q Consensus       228 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~----~~~~~~l~sgs~Dg~v~vwd~~~~~~~  302 (502)
                       +...+.                           .+.. ......++|+    |+++.++++...+++|.|+|..+.+.+
T Consensus       228 ~t~~~v~---------------------------~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~  279 (567)
T 1qks_A          228 KEPTTVA---------------------------EIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK  279 (567)
T ss_dssp             SSCCEEE---------------------------EEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred             CCCcEeE---------------------------EEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence             321111                           1111 1235789999    686655666667799999999999888


Q ss_pred             EEecc----------CC-CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecCCeEEEEeCCCCCCEEEE
Q 010769          303 LTLEH----------HT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVV  370 (502)
Q Consensus       303 ~~~~~----------h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~  370 (502)
                      .++..          |. ..+..+..++.++.++++....|.|.++|........ ...........+.|+|++..++++
T Consensus       280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va  359 (567)
T 1qks_A          280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA  359 (567)
T ss_dssp             EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred             EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE
Confidence            77642          22 2678899999887777777788999999987654322 122334457788999998866667


Q ss_pred             EeCCCeEEEEECCCCCCCCCCCCCCccEEEec-----CCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCC-----e
Q 010769          371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-----HDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQ-----P  439 (502)
Q Consensus       371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~~~~-----~  439 (502)
                      ...++.|.++|+.+.         +.+..+..     |.+....+ ++|++..+.+++. .++.|.++|....+     .
T Consensus       360 ~~~sn~V~ViD~~t~---------kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~  429 (567)
T 1qks_A          360 ANARNKLVVIDTKEG---------KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW  429 (567)
T ss_dssp             EGGGTEEEEEETTTT---------EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             eCCCCeEEEEECCCC---------cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccC
Confidence            778899999999986         44444433     33222222 5787535556654 46899999998722     2


Q ss_pred             eEEEEecCCCCCEEEEEEcCCCCcEEEEEeC------CCcEEEEECCCC
Q 010769          440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSD  482 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~~llasg~~------dg~i~vwd~~~~  482 (502)
                      ..+..+......-..+.++|+++++.+....      .++|.|+|+.+.
T Consensus       430 kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          430 KILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             SEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            2444544433333447789999975554311      358999999876

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.55  E-value=3.3e-12  Score=135.94  Aligned_cols=254  Identities=9%  Similarity=0.022  Sum_probs=165.6

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      +...+..+.|+|+|++||.+...+......||+++...+   ......  ........+.|       +|+|+.|+.++.
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg---~~~~~~--~~~~~~~~~~w-------spDg~~l~~~~~  190 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---KELPDV--LERVKFSCMAW-------THDGKGMFYNAY  190 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---EEEEEE--EEEECSCCEEE-------CTTSSEEEEEEC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---CCCccc--ccCcccceEEE-------EeCCCEEEEEEE
Confidence            334678899999999999887765433346777776554   222110  00001234566       899999999988


Q ss_pred             CCc----------------EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcE
Q 010769          218 EPA----------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI  281 (502)
Q Consensus       218 dg~----------------I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~  281 (502)
                      ++.                |++|++.+.....                       ........|...+..+.|+|+++ +
T Consensus       191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-----------------------~~v~~~~~~~~~~~~~~~SpDg~-~  246 (710)
T 2xdw_A          191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-----------------------ILCAEFPDEPKWMGGAELSDDGR-Y  246 (710)
T ss_dssp             CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-----------------------EEEECCTTCTTCEEEEEECTTSC-E
T ss_pred             CCccccccccccccCCCCEEEEEECCCCcccc-----------------------eEEeccCCCCeEEEEEEEcCCCC-E
Confidence            765                9999986532110                       11112223556688999999965 5


Q ss_pred             EEEEec-----CCcEEEEECCC------Ce-eeEEeccCCCCeEEEEEcCCCCcEEEEEECC---CcEEEEeCCCCCC--
Q 010769          282 LASASA-----DKQVKIWDVAA------GK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTH--  344 (502)
Q Consensus       282 l~sgs~-----Dg~v~vwd~~~------~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~--  344 (502)
                      |+.++.     +..|++||+.+      +. ....+..+...+.. .|++++..+++.+..+   +.|.+|++.++..  
T Consensus       247 l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~  325 (710)
T 2xdw_A          247 VLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK  325 (710)
T ss_dssp             EEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG
T ss_pred             EEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc
Confidence            555543     56899999986      43 35556666666655 4888884555554433   3699999987642  


Q ss_pred             ccceEeecC--CeEEEEeCCCCCCEEEEEeCCCe--EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769          345 SGFKWAVAA--DVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       345 ~~~~~~~~~--~v~~v~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ......+..  .+..++|++. ..++++...++.  |.+|++.++         ..+..+..+.+.+.+++++|++..++
T Consensus       326 ~~~l~~~~~~~~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~~~g---------~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          326 WKVLVPEHEKDVLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATG---------ALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             CEEEECCCSSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTTC---------CEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             ceeccCCCCCCeEEEEEEEcC-CEEEEEEEECCEEEEEEEECCCC---------CEEEecCCCCceEEEEecCCCCCEEE
Confidence            122333333  5778899864 457788888885  566676554         45566777778889999999874555


Q ss_pred             EEEeC---CCcEEEEECCCCC
Q 010769          421 ATGST---DKMVKLWDLSNNQ  438 (502)
Q Consensus       421 ~t~s~---dg~i~vwd~~~~~  438 (502)
                      ++.+.   .+.|++||+.+++
T Consensus       396 ~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          396 YQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEECSSCCCEEEEEETTSSS
T ss_pred             EEEeCCCCCCEEEEEECCCCc
Confidence            55443   4789999998876

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.54  E-value=1.4e-12  Score=121.09  Aligned_cols=241  Identities=9%  Similarity=0.032  Sum_probs=158.2

Q ss_pred             ccccccccCCCceEE-EEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          141 DLEDMTINPNDAVIV-CARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~-~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ...++++.|++++++ +....+     .|+.++....   ...... ......|.++.+       +++|+++++.. ++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~-----~i~~~~~~~~---~~~~~~-~~~~~~p~~i~~-------~~~g~l~v~~~-~~   87 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYG-----RVVKLATGST---GTTVLP-FNGLYQPQGLAV-------DGAGTVYVTDF-NN   87 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSC-----EEEEECC--------EECC-CCSCCSCCCEEE-------CTTCCEEEEET-TT
T ss_pred             CccceEECCCCCEEEEccCCCC-----cEEEecCCCc---ccceEe-eCCcCCcceeEE-------CCCCCEEEEcC-CC
Confidence            567789999999777 434444     6667765432   111110 011123455555       67888766666 88


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .|.+|+.......                           .........+.+|++.++ ++++++...++.|.+|+..+.
T Consensus        88 ~i~~~d~~~~~~~---------------------------~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~  139 (270)
T 1rwi_B           88 RVVTLAAGSNNQT---------------------------VLPFDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSK  139 (270)
T ss_dssp             EEEEECTTCSCCE---------------------------ECCCCSCSSEEEEEECTT-CCEEEEEGGGTEEEEECTTCC
T ss_pred             EEEEEeCCCceEe---------------------------eeecCCcCCCcceEECCC-CCEEEEECCCCEEEEEECCCc
Confidence            9999997642110                           000122356889999998 457777777889999986655


Q ss_pred             eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEE
Q 010769          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG  379 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i  379 (502)
                      ............+.++++++++ +++++...++.|.+|+................+..+++++++ .++++...++.|.+
T Consensus       140 ~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~  217 (270)
T 1rwi_B          140 TQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVK  217 (270)
T ss_dssp             SCEECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEE
T ss_pred             eeEeeccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEE
Confidence            4433223334567899999988 777777778899999987654332222222568899999987 46777777889999


Q ss_pred             EECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       380 ~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      |+....         ........+...+.++++++++ +++++...++.|++|++...+
T Consensus       218 ~~~~~~---------~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          218 LLAGST---------TSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             ECTTCS---------CCEECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEECCCGGG
T ss_pred             EcCCCC---------cceeeccCCCCCceeEEECCCC-CEEEEECCCCEEEEEcCCCcc
Confidence            998654         1111112233568999999998 788888889999999987654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.54  E-value=1.1e-12  Score=125.97  Aligned_cols=235  Identities=9%  Similarity=0.019  Sum_probs=159.7

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ++++.++...++.|.+||..+...+..                           + ........|++++++ .++++...
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t~~~~~~---------------------------i-~~~~~p~~i~~~~~g-~lyv~~~~  103 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINTFKEVGR---------------------------I-TGFTSPRYIHFLSDE-KAYVTQIW  103 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTCCEEEE---------------------------E-ECCSSEEEEEEEETT-EEEEEEBS
T ss_pred             CCEEEEEEcCCCEEEEEECcccEEEEE---------------------------c-CCCCCCcEEEEeCCC-eEEEEECC
Confidence            355666666679999999976432221                           1 123567889998884 45555548


Q ss_pred             CCcEEEEECCCCeeeEEeccCC-----CCeEEEEEcCCCCcEEEEEE-CCCcEEEEeCCCCCCccceEeecCCeEEEEeC
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHT-----DKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKWAVAADVESLAWD  361 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~  361 (502)
                      ++.|.+||+.+++....+....     .....+++  .+..++++.. .++.|.++|+.+.+... ..........++++
T Consensus       104 ~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~-~i~~g~~p~~i~~~  180 (328)
T 3dsm_A          104 DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVD-ELTIGIQPTSLVMD  180 (328)
T ss_dssp             CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEE-EEECSSCBCCCEEC
T ss_pred             CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEE-EEEcCCCccceEEc
Confidence            8999999999999887775332     14566777  3425555544 48999999999876544 33444556788999


Q ss_pred             CCCCCEEEEEeCC----------CeEEEEECCCCCCCCCCCCCCccEEEecC-CCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          362 PHAEHSFVVSLED----------GTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       362 p~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      |++. +++++..+          +.|.++|..+.         +....+... ......++|+|++ +.|+++..  .|.
T Consensus       181 ~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------~v~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~  247 (328)
T 3dsm_A          181 KYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETF---------TVEKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIW  247 (328)
T ss_dssp             TTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTT---------EEEEEEECCTTCCCEEEEECTTS-CEEEEESS--SEE
T ss_pred             CCCC-EEEEECCCccCCccccCCceEEEEECCCC---------eEEEEEecCCCCCceeEEEecCC-CEEEEEcc--EEE
Confidence            9875 55555443          78999999876         444444432 2368999999988 66666544  899


Q ss_pred             EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEE----eCCCcEEEEECCCCcccccc
Q 010769          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG----GSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg----~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +||+.+++................++++|++..++++.    ..++.|.+||.. ++.+.++
T Consensus       248 ~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          248 RMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             EEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             EEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            99998876321111122245688999999665577776    678899999998 7766543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.54  E-value=3.1e-12  Score=119.30  Aligned_cols=211  Identities=12%  Similarity=0.027  Sum_probs=154.1

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcc-cceeeEEecCCCCcEEEEEe
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~sgs  286 (502)
                      .+++|++++.++.|.+||..+++.+.                           .+..+. ..+.++.+.|+ +++|+  +
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w---------------------------~~~~~~~~~~~~~~~~pd-G~ilv--s   53 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVW---------------------------EYPLEKGWECNSVAATKA-GEILF--S   53 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEE---------------------------EEECCTTCCCCEEEECTT-SCEEE--E
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEE---------------------------EeCCCccCCCcCeEECCC-CCEEE--e
Confidence            47899999999999999986644332                           222232 46788999999 45777  4


Q ss_pred             cCCcEEEEECCCCeeeEEeccC-CCCeEEEEEcCCCCcEEEEEEC-CCcEEEEeCCCCCCccceEee-------cCCeEE
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWAV-------AADVES  357 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~-------~~~v~~  357 (502)
                      .++.|..||. +++.+..+..+ ...+.++.+.++| +++++.+. ++.|..++. .++... .+..       ......
T Consensus        54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~-~~~~~~~~~~~~~~~~~  129 (276)
T 3no2_A           54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLS-KTEFETGIERPHAQFRQ  129 (276)
T ss_dssp             CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEE-EEEECCSCSSGGGSCSC
T ss_pred             CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEE-EEeccCCCCcccccccC
Confidence            5788999998 89999988764 3578899999999 88888776 777877775 333222 2221       123445


Q ss_pred             EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       358 v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      +++.+++. ++++...++.|..||.. +         +.++++..+ ..+.++.+.+++ +++++++.++.|..+|..++
T Consensus       130 v~~~~~G~-~lv~~~~~~~v~~~d~~-G---------~~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG  196 (276)
T 3no2_A          130 INKNKKGN-YLVPLFATSEVREIAPN-G---------QLLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESN  196 (276)
T ss_dssp             CEECTTSC-EEEEETTTTEEEEECTT-S---------CEEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTC
T ss_pred             ceECCCCC-EEEEecCCCEEEEECCC-C---------CEEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCC
Confidence            66788765 78888899999999987 6         677887765 345677888887 88888888889999999988


Q ss_pred             CeeEEEEecC------CCCCEEEEEEcCCCCcEEEEE
Q 010769          438 QPSCIASRNP------KAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       438 ~~~~~~~~~~------~~~~v~~~~~spd~~~llasg  468 (502)
                      +.  +..+..      ....+..++..++|. ++++.
T Consensus       197 ~~--~w~~~~~~~~~~~l~~~~~~~~~~~G~-i~v~~  230 (276)
T 3no2_A          197 RI--VRRVNANDIEGVQLFFVAQLFPLQNGG-LYICN  230 (276)
T ss_dssp             CE--EEEEEGGGSBSCCCSEEEEEEECTTSC-EEEEE
T ss_pred             cE--EEEecCCCCCCccccccccceEcCCCC-EEEEe
Confidence            84  444321      123478899999998 46655

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.51  E-value=4.5e-12  Score=135.54  Aligned_cols=288  Identities=9%  Similarity=0.031  Sum_probs=171.9

Q ss_pred             cCCCceEEEEEecCCcceeEEEEEecC---CCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-----C
Q 010769          148 NPNDAVIVCARNEDDVSHLEVYILEES---DGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-----P  219 (502)
Q Consensus       148 ~p~~~~l~~~~~~~~~~~l~v~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d-----g  219 (502)
                      +|+|+.++....++....-.+|..+..   ......|. ..+......    .|....+.|||+|++||.++.+     .
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ll-d~~~l~~~~----~~~~~~~~~SPDG~~la~~~~~~G~e~~  189 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLL-DPNTWAKDG----ATALDAWAASDDGRLLAYSVQDGGSDWR  189 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEE-CGGGCC--------EEEEEEEECTTSSEEEEEEEETTCSEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEE-CHHHhccCC----CEEEEeEEECCCCCEEEEEEcCCCCceE
Confidence            389999998887765445678888754   22111111 110000000    0111123338999999987654     4


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc---------
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ---------  290 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~---------  290 (502)
                      .|++||+.++..+..                            ..+...+..++|+|+ . .|+.++.++.         
T Consensus       190 ~i~v~dl~tg~~~~~----------------------------~~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          190 TVKFVGVADGKPLAD----------------------------ELKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEETTTCCEEEE----------------------------EEEEEESCCCEESTT-S-EEEEEECCCC--------C
T ss_pred             EEEEEECCCCCCCCc----------------------------cCCCceeccEEEECC-C-EEEEEEecCcccccccccC
Confidence            699999986443210                            011122467899999 6 5555555543         


Q ss_pred             -----EEEEECCCCee--eEEe--ccCCCCeEEEEEcCCCCcEEEEEECC-----CcEEEEeCCCC--CCccceEeecCC
Q 010769          291 -----VKIWDVAAGKC--NLTL--EHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARIS--THSGFKWAVAAD  354 (502)
Q Consensus       291 -----v~vwd~~~~~~--~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~--~~~~~~~~~~~~  354 (502)
                           |++|++.++..  ...+  ..+...+.++.|+|+| ++|+..+.+     ..|.+||+.++  ............
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                 89999987652  2223  3334468899999999 666655543     38999999876  312223333344


Q ss_pred             eEEEEeCCCCCCEEEEEeC---CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769          355 VESLAWDPHAEHSFVVSLE---DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      +.... +|++..+++.+..   ++.|.+||+.+..       ......+..+...+..++++  +..++++...++..+|
T Consensus       319 ~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l  388 (741)
T 1yr2_A          319 QWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-------PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQV  388 (741)
T ss_dssp             CEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-------CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEE
T ss_pred             eEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-------cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEE
Confidence            44443 3777644444432   4569999987631       01222234444556677777  3378888888998777


Q ss_pred             EECC-CCCeeEEEEecC-CCCCEEEEEEcCCCCcEEEEEeC---CCcEEEEECCCCc
Q 010769          432 WDLS-NNQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGS---KGKLEIWDTLSDA  483 (502)
Q Consensus       432 wd~~-~~~~~~~~~~~~-~~~~v~~~~~spd~~~llasg~~---dg~i~vwd~~~~~  483 (502)
                      |.+. .+.  ....+.. ..+.+..++++|++..++++.++   .++|++||+.+++
T Consensus       389 ~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          389 LAFDLDGK--PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEETTSC--EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEeCCCC--ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            7554 233  2333433 35778999999998865544443   3689999998876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.50  E-value=5.4e-11  Score=111.90  Aligned_cols=277  Identities=10%  Similarity=0.064  Sum_probs=178.5

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ....++.+.+++++.++....+     .|+.++.. .   .+...........|.++.+       .++++++++...++
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~-----~v~~~~~~-~---~~~~~~~~~~~~~~~~i~~-------~~~g~l~v~~~~~~   83 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKAN-----KISSLDQS-G---RIKEFEVPTPDAKVMCLIV-------SSLGDIWFTENGAN   83 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTT-----EEEEECTT-S---CEEEEECSSTTCCEEEEEE-------CTTSCEEEEETTTT
T ss_pred             CCcceeeECCCCCEEEEcCCCC-----eEEEECCC-C---ceEEEECCCCCCcceeEEE-------CCCCCEEEEecCCC
Confidence            4677899999999888775555     67777655 3   2222111011133445544       67888888777778


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .|.+|+.. ... ..                         .........+.++++.++ +.++++...++.|..|+.. +
T Consensus        84 ~v~~~d~~-g~~-~~-------------------------~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g  134 (300)
T 2qc5_A           84 KIGKLSKK-GGF-TE-------------------------YPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTAD-G  134 (300)
T ss_dssp             EEEEECTT-SCE-EE-------------------------EECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECTT-S
T ss_pred             eEEEECCC-CCe-EE-------------------------ecCCCCCCCCccceECCC-CCEEEEccCCCeEEEECCC-C
Confidence            89999875 211 10                         011122356889999988 4577776668899999987 6


Q ss_pred             eeeE-EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCCCCCEEEEEeCCCeE
Q 010769          300 KCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTI  377 (502)
Q Consensus       300 ~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i  377 (502)
                      +... .+......+.++++.+++ +++++...++.|..++. .+....... .....+..+++++++ .++++....+.|
T Consensus       135 ~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i  211 (300)
T 2qc5_A          135 TIYEYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKI  211 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEE
T ss_pred             CEEEccCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEE
Confidence            5442 233345678999999998 66666666788999998 433322111 123457899999976 456666667789


Q ss_pred             EEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEE
Q 010769          378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF  457 (502)
Q Consensus       378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~  457 (502)
                      .+|+. .+        ......+..+...+.++++.+++ ++.++...++.|..|+. +++. ...........+.++++
T Consensus       212 ~~~~~-~g--------~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~  279 (300)
T 2qc5_A          212 GRITT-TG--------EISEYDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITF  279 (300)
T ss_dssp             EEECT-TC--------CEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEE
T ss_pred             EEEcC-CC--------cEEEEECCCCCCCceEEEECCCC-CEEEeccCCCeEEEECC-CCcE-EEEECCccCCccceeEe
Confidence            99998 33        11222233345678999999987 66666666789999998 4442 22333334456889999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEEC
Q 010769          458 SEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       458 spd~~~llasg~~dg~i~vwd~  479 (502)
                      +++|. ++++ +.. .|..++.
T Consensus       280 ~~~g~-l~v~-~~~-~i~~~~p  298 (300)
T 2qc5_A          280 GKDGS-VWFA-LKC-KIGKLNL  298 (300)
T ss_dssp             CTTSC-EEEE-CSS-EEEEEEE
T ss_pred             CCCCC-EEEE-ccC-ceEEeCC
Confidence            99998 4554 334 6777765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.50  E-value=7.1e-11  Score=115.07  Aligned_cols=292  Identities=12%  Similarity=0.045  Sum_probs=175.2

Q ss_pred             cccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec---------
Q 010769          146 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS---------  216 (502)
Q Consensus       146 ~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~---------  216 (502)
                      ...|+++.+.++...+......|++|+....   .+.  ........| .+.       ++|+|++|+++.         
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~---~~~--~~i~~g~~p-~i~-------~spDg~~lyv~n~~~~~~~rg   93 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSG---SIL--GHVNGGFLP-NPV-------AAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCC---eEE--EEecCCCCC-CeE-------ECCCCCEEEEEeccccccccC
Confidence            3447777776664311111116777776554   322  222222223 333       389999999886         


Q ss_pred             -CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec--CCcEEE
Q 010769          217 -MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKI  293 (502)
Q Consensus       217 -~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--Dg~v~v  293 (502)
                       .++.|.+||..+........+.+.               .    .. .+......++|+|+++ +|+.++.  ++.|.+
T Consensus        94 ~~~~~v~viD~~t~~~~~~i~~~~~---------------~----~~-~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~v  152 (373)
T 2mad_H           94 KRTDYVEVFDPVTFLPIADIELPDA---------------P----RF-DVGPYSWMNANTPNNA-DLLFFQFAAGPAVGL  152 (373)
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCc---------------c----cc-ccCCCccceEECCCCC-EEEEEecCCCCeEEE
Confidence             367899999975443322211100               0    00 0112345899999955 6666653  578999


Q ss_pred             EECCCCeeeEE-eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-----eecCC-eEEEEeCCCCCC
Q 010769          294 WDVAAGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-----AVAAD-VESLAWDPHAEH  366 (502)
Q Consensus       294 wd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~-v~~v~~~p~~~~  366 (502)
                      +| .+++.+.. +.. ..   ++.+.|.+...+++.+.||.+.+++. +++......     ....+ .....+.+++..
T Consensus       153 iD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  226 (373)
T 2mad_H          153 VV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR  226 (373)
T ss_pred             EE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCE
Confidence            99 99998887 642 22   24556776677888889999999999 665442111     11111 123445565554


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec----------CCCCeeEEEEcCCCCCEEEEEe---------CCC
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----------HDKAVCTISYNPLVPNLLATGS---------TDK  427 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~sp~~~~~l~t~s---------~dg  427 (502)
                      ++++. ..+.|.+.|+.....       ..+..+..          .......+.++|++.+++++..         ..+
T Consensus       227 ~~~~~-~~~~v~vid~~~~~~-------~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          227 IVWPV-YSGKILQADISAAGA-------TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             EEEEc-CCceEEEEeccCCcc-------eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            44444 678999999875421       11111111          1223445788998844444332         135


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCcccccc
Q 010769          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~-~dg~i~vwd~~~~~~~~~~  488 (502)
                      .|.++|+.+.+.  +..+. ..+...+++|+|||+++++++. .++.|.+||+.+++.+.+.
T Consensus       299 ~V~VID~~t~~v--v~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          299 EVTSVTGLVGQT--SSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             eEEEEECCCCEE--EEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            799999998874  33333 2235889999999995466665 5899999999999988773

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.50  E-value=5.7e-12  Score=118.90  Aligned_cols=204  Identities=7%  Similarity=0.034  Sum_probs=144.8

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  343 (502)
                      .+.....+++|+|++..+++++..++.|.+|+..++  ...+..+...+.++++++++ .++++...++.|.+||..+++
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCC
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCc
Confidence            455678899999995548889999999999999887  56666677889999999998 777766667899999997766


Q ss_pred             CccceEee----cCCeEEEEeCCCCCCEEEE----Ee-------------CCCeEEEEECCCCCCCCCCCCCCccEEEec
Q 010769          344 HSGFKWAV----AADVESLAWDPHAEHSFVV----SL-------------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHA  402 (502)
Q Consensus       344 ~~~~~~~~----~~~v~~v~~~p~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  402 (502)
                      ........    ...+..++++|++. ++++    |+             ..+.|..++.. +          .+..+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g----------~~~~~~~  169 (296)
T 3e5z_A          102 WESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G----------TLSAPIR  169 (296)
T ss_dssp             EEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S----------CEEEEEC
T ss_pred             EEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-C----------CEEEeec
Confidence            43321111    23466799999875 5555    32             13456666554 2          2333455


Q ss_pred             CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC-CCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~-~~~~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      +......++|+|++ ++|++.+.++.|++|++. .++. .....+..+.+.+.+++++++|. ++++.  ++.|.+|+..
T Consensus       170 ~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          170 DRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPD  245 (296)
T ss_dssp             CCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTT
T ss_pred             CCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCC
Confidence            66678999999998 666888888999999997 4443 11222233455677899999998 45544  7889999986


Q ss_pred             CCccccc
Q 010769          481 SDAGISN  487 (502)
Q Consensus       481 ~~~~~~~  487 (502)
                       ++.+..
T Consensus       246 -g~~~~~  251 (296)
T 3e5z_A          246 -GDELGR  251 (296)
T ss_dssp             -SCEEEE
T ss_pred             -CCEEEE
Confidence             554443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.49  E-value=2e-12  Score=124.89  Aligned_cols=230  Identities=12%  Similarity=0.162  Sum_probs=145.0

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d-  218 (502)
                      ..+..+.|+|+|+.|+.++..++.....||+++...+....+..++     . ..++.|       +|+|+.|+.++.+ 
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-----~-~~~~~w-------spdg~~l~~~~~~~  125 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-----N-IRSLEW-------NEDSRKLLIVGFKR  125 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-----E-EEEEEE-------CTTSSEEEEEEECC
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-----C-ccceeE-------CCCCCEEEEEEccC
Confidence            3567899999999999887654223557888886554211222222     1 355666       8999999888642 


Q ss_pred             --------------------------CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          219 --------------------------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       219 --------------------------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                                                ..|.+|++..+....                           .+.. . .+..+
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~---------------------------~l~~-~-~~~~~  176 (347)
T 2gop_A          126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE---------------------------EFEK-P-RFSSG  176 (347)
T ss_dssp             CC---------CCCC---------CEEEEEEEETTTTEEEE---------------------------EEEE-E-TTCEE
T ss_pred             CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe---------------------------eecC-C-Ccccc
Confidence                                      468888876422100                           1111 2 67889


Q ss_pred             EecCCCCcEEEEEecCC-------cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC--------CcEEEE
Q 010769          273 AWNKEFRNILASASADK-------QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--------RSVVMK  337 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg-------~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~vw  337 (502)
                      +|+|++  ++++++.++       ...||.+.+++. ..+..+ ..+.++  +|+| +.|+.++.+        ..|.+|
T Consensus       177 ~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~  249 (347)
T 2gop_A          177 IWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIY  249 (347)
T ss_dssp             EEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEE
T ss_pred             cCCCCe--EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEE
Confidence            999994  777776542       344554445554 334334 455544  8999 556655543        468888


Q ss_pred             eCCCCCCccceEeecCCeEE-EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          338 DARISTHSGFKWAVAADVES-LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~-v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      |  ++........+...+.. +.|+ ++  ++++++.++.+++| +.++         .. ..+..+...|.+++|+|  
T Consensus       250 d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g---------~~-~~~~~~~~~v~~~~~s~--  311 (347)
T 2gop_A          250 D--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDG---------EI-KPIAKGRHWIMGFDVDE--  311 (347)
T ss_dssp             C--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESS---------SE-EEEECSSSEEEEEEESS--
T ss_pred             C--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCC---------ce-EEEecCCCeEEeeeeeC--
Confidence            8  33322222233456775 8998 65  88888999999999 8732         33 34445677899999998  


Q ss_pred             CCEEEEEeCCCcE-EEEECCCCC
Q 010769          417 PNLLATGSTDKMV-KLWDLSNNQ  438 (502)
Q Consensus       417 ~~~l~t~s~dg~i-~vwd~~~~~  438 (502)
                       .++++++.++.. .||.+. ++
T Consensus       312 -~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          312 -IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             -SEEEEEECSSSCCEEEEES-SS
T ss_pred             -cEEEEEcCCCChHHheEeC-Cc
Confidence             467777766654 777765 44

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.48  E-value=7.1e-11  Score=111.03  Aligned_cols=229  Identities=8%  Similarity=0.041  Sum_probs=157.6

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .++|+++++...++.|.+|+.. .. ...                         .....+...+.+|++.++ +.++++.
T Consensus        23 d~~g~l~v~~~~~~~v~~~d~~-~~-~~~-------------------------~~~~~~~~~~~~i~~~~~-g~l~v~~   74 (299)
T 2z2n_A           23 SDKGKVWITQHKANMISCINLD-GK-ITE-------------------------YPLPTPDAKVMCLTISSD-GEVWFTE   74 (299)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT-CC-EEE-------------------------EECSSTTCCEEEEEECTT-SCEEEEE
T ss_pred             CCCCCEEEEecCCCcEEEEcCC-CC-eEE-------------------------ecCCcccCceeeEEECCC-CCEEEeC
Confidence            6789888777667899999976 21 110                         011123467899999998 4577766


Q ss_pred             ecCCcEEEEECCCCee-eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCC
Q 010769          286 SADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPH  363 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~  363 (502)
                      ..++.|..|+.. ++. ...+......+.++++.+++ .++++...++.|.+||. .+....... .....+..++++++
T Consensus        75 ~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           75 NAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             CCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence            668899999986 432 22222345678999999988 77777777889999998 433222111 12346889999997


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      +. ++++....+.|..||. ++.        ........+...+.++++.+++ .++++....+.|.+|+. +++.. ..
T Consensus       152 g~-l~v~~~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-~~  218 (299)
T 2z2n_A          152 NA-LWFTENQNNAIGRITE-SGD--------ITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEIT-EF  218 (299)
T ss_dssp             SC-EEEEETTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-EE
T ss_pred             CC-EEEEeCCCCEEEEEcC-CCc--------EEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcEE-EE
Confidence            64 6666666789999998 441        1112233345568899999987 77777666888999999 66532 23


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      ....+...+.+++++++|. ++++...++.|.+|+.
T Consensus       219 ~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          219 KIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTS  253 (299)
T ss_dssp             ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEET
T ss_pred             ECCCCCCCceeEEECCCCC-EEEeccCCceEEEECC
Confidence            3344556799999999998 5666556789999998

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.47  E-value=3.4e-11  Score=116.06  Aligned_cols=295  Identities=12%  Similarity=0.080  Sum_probs=179.9

Q ss_pred             ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec--------
Q 010769          145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS--------  216 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~--------  216 (502)
                      ....|+++.+.++........-.|++++....   .+  -..+.....|- +..       +|+|++|.+++        
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~---~v--~~~I~vG~~P~-va~-------spDG~~lyVan~~~~r~~~  104 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RV--IGMIDGGFLPN-PVV-------ADDGSFIAHASTVFSRIAR  104 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---EE--EEEEEECSSCE-EEE-------CTTSSCEEEEEEEEEETTE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCC---eE--EEEEECCCCCc-EEE-------CCCCCEEEEEccccccccc
Confidence            45579999888886531000127888887654   32  23333444442 433       89999988775        


Q ss_pred             --CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec--CCcEE
Q 010769          217 --MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVK  292 (502)
Q Consensus       217 --~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--Dg~v~  292 (502)
                        .++.|.+||..+......+.+.++                    ...........++|+|+++ +|+.+..  ++.|.
T Consensus       105 G~~~~~VsviD~~t~~v~~~I~v~~g--------------------~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~Vs  163 (386)
T 3sjl_D          105 GERTDYVEVFDPVTLLPTADIELPDA--------------------PRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVG  163 (386)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEETTC--------------------CCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEE
T ss_pred             CCCCCEEEEEECCCCeEEEEEECCCc--------------------cccccCCCCceEEEcCCCC-EEEEEEcCCCCeEE
Confidence              357899999987544332221100                    0000122456799999965 5555543  68999


Q ss_pred             EEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-CCCccceEee----cCCe-EEEEeC-CCCC
Q 010769          293 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKWAV----AADV-ESLAWD-PHAE  365 (502)
Q Consensus       293 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~----~~~v-~~v~~~-p~~~  365 (502)
                      ++|+.+++.+.++... + +  ....|.+.+.+++.+.||.+.+.++.. ++........    ...+ ....|. +++ 
T Consensus       164 VID~~t~~vv~tI~v~-g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-  238 (386)
T 3sjl_D          164 VVDLEGKAFKRMLDVP-D-C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-  238 (386)
T ss_dssp             EEETTTTEEEEEEECC-S-E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-
T ss_pred             EEECCCCcEEEEEECC-C-c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC-
Confidence            9999999999988532 1 1  223355557788889999999999876 3332101011    0111 123553 444 


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe----------cCCCCeeEEEEcCCCCCEEEEEeC---------C
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH----------AHDKAVCTISYNPLVPNLLATGST---------D  426 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~sp~~~~~l~t~s~---------d  426 (502)
                       .++..+.+|.|+++|+.....       .....+.          ........++++|.+.+++++-..         .
T Consensus       239 -~~~~vs~~g~V~v~d~~~~~~-------~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~  310 (386)
T 3sjl_D          239 -RLVWPTYTGKIHQIDLSSGDA-------KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  310 (386)
T ss_dssp             -EEEEEBTTSEEEEEECTTSSC-------EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             -cEEEEeCCCEEEEEECCCCcc-------eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence             233455689999999976521       1111111          112334457788987444444321         2


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCccccccc
Q 010769          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +.|.++|+.+.+........   ..+.+|++++|++ .++++...++.|.++|..+++.++++-
T Consensus       311 ~~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          311 RFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             EEEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CEEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence            56999999999854333332   3688999999996 445555668999999999999887653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.46  E-value=7e-12  Score=133.02  Aligned_cols=257  Identities=9%  Similarity=-0.005  Sum_probs=161.8

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCc-ceeeeecCCCCCCCCCCEEEEe
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFP-LCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      .|...+..+.|||+|++||.+...+......||+++...+   ....  ...++... ..+.|       +|+|+.|+.+
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg---~~~~--~~~~~~~~~~~~~w-------spDg~~l~~~  185 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG---EWSK--VDVIEGGKYATPKW-------TPDSKGFYYE  185 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC---CBCS--SCCBSCCTTCCCEE-------CTTSSEEEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC---CCcC--CcccCcccccceEE-------ecCCCEEEEE
Confidence            3455788999999999999776543221236666665554   2210  00111111 34455       8999999999


Q ss_pred             cCCCc-------------EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          216 SMEPA-------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       216 ~~dg~-------------I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      +.+..             |++|++.+.....                       ........|...+.++.|+|++. +|
T Consensus       186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~-----------------------~lv~~~~~~~~~~~~~~~SpDG~-~l  241 (695)
T 2bkl_A          186 WLPTDPSIKVDERPGYTTIRYHTLGTEPSKD-----------------------TVVHERTGDPTTFLQSDLSRDGK-YL  241 (695)
T ss_dssp             ECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-----------------------EEEECCCCCTTCEEEEEECTTSC-CE
T ss_pred             EecCCCCCccccCCCCCEEEEEECCCCchhc-----------------------eEEEecCCCCEEEEEEEECCCCC-EE
Confidence            88766             9999987532111                       11222234667789999999965 55


Q ss_pred             EEEecCC----cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE---CCCcEEEEeCCCCCCc--cceEee--
Q 010769          283 ASASADK----QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS---FDRSVVMKDARISTHS--GFKWAV--  351 (502)
Q Consensus       283 ~sgs~Dg----~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~--~~~~~~--  351 (502)
                      +.++.++    .|.+|+..+++. ..+..+...+....| +++ .+++++.   .++.|.+||+.++...  .....+  
T Consensus       242 ~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  318 (695)
T 2bkl_A          242 FVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS  318 (695)
T ss_dssp             EEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred             EEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence            5555554    677777655543 444445556666667 667 4555544   2588999999876531  222322  


Q ss_pred             cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-CCCeeEEEEcCCCCCEEEEEeC---CC
Q 010769          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGST---DK  427 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~---dg  427 (502)
                      ...+..++|+  +..++++...++..++|.+...        ......+..+ ...+..++++|++..++++.+.   .+
T Consensus       319 ~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~--------g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  388 (695)
T 2bkl_A          319 SASLLSVSIV--GGHLSLEYLKDATSEVRVATLK--------GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR  388 (695)
T ss_dssp             SCEEEEEEEE--TTEEEEEEEETTEEEEEEEETT--------CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred             CCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCC--------CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence            3347788887  3458888889998888866532        1334445444 5678888999988445544433   46


Q ss_pred             cEEEEECCCCCeeEE
Q 010769          428 MVKLWDLSNNQPSCI  442 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~  442 (502)
                      +|++||+.+++...+
T Consensus       389 ~v~~~d~~~g~~~~l  403 (695)
T 2bkl_A          389 QIYKTSVSTGKSELW  403 (695)
T ss_dssp             EEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCcEEEE
Confidence            799999998774333

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.44  E-value=1.8e-11  Score=117.45  Aligned_cols=198  Identities=7%  Similarity=-0.041  Sum_probs=140.7

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      ....++.+..  ..++++...++.|.+||..+++.+.++. .......+++++++ .++++...++.|.+||+.+.+...
T Consensus        44 ~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           44 DVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             SCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEE
T ss_pred             ccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEE
Confidence            4467777754  4566677778999999999999988885 35678899998888 666665589999999998876543


Q ss_pred             ceEeecC------CeEEEEeCCCCCCEEEEEe-CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCE
Q 010769          347 FKWAVAA------DVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       347 ~~~~~~~------~v~~v~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                       ......      ....+++  .+..++++.. .++.|.+||+.+.         ..+..+... .....++++|++ ++
T Consensus       120 -~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~---------~~~~~i~~g-~~p~~i~~~~dG-~l  185 (328)
T 3dsm_A          120 -YIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD---------KVVDELTIG-IQPTSLVMDKYN-KM  185 (328)
T ss_dssp             -EEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT---------EEEEEEECS-SCBCCCEECTTS-EE
T ss_pred             -EEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC---------eEEEEEEcC-CCccceEEcCCC-CE
Confidence             233333      5566777  3444444444 4889999999886         445555433 345789999988 66


Q ss_pred             EEEEeCC----------CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          420 LATGSTD----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       420 l~t~s~d----------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      ++++..+          +.|.+||..+++........ .......++|+|++.++++ +..  .|.+||+.+++...
T Consensus       186 ~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv-~~~--~v~~~d~~t~~~~~  258 (328)
T 3dsm_A          186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYW-INN--DIWRMPVEADRVPV  258 (328)
T ss_dssp             EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEE-ESS--SEEEEETTCSSCCS
T ss_pred             EEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEE-Ecc--EEEEEECCCCceee
Confidence            6666554          78999999988743222222 1236889999999986444 433  89999999887653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.42  E-value=1.4e-11  Score=114.82  Aligned_cols=188  Identities=15%  Similarity=0.106  Sum_probs=142.1

Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEeccCC-CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec--CCeE
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA--ADVE  356 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~  356 (502)
                      ++|++++.++.|.+||..+|+.+.++..+. ..+.++.+.|+| ++|+  +.++.|..||. +++... .+...  ..+.
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W-~~~~~~~~~~~   80 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELW-NIAAPAGCEMQ   80 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEE-EEECCTTCEEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEE-EEcCCCCcccc
Confidence            689999999999999999999999998765 578999999999 7777  45788999998 555433 23322  4678


Q ss_pred             EEEeCCCCCCEEEEEeC-CCeEEEEECCCCCCCCCCCCCCccEEEec------CCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          357 SLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHA------HDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ++.+.|++. ++++.+. ++.|..++. .+         +.++.+..      +......+++.+++ ++|++.+.++.|
T Consensus        81 ~~~~~~dG~-~lv~~~~~~~~v~~vd~-~G---------k~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v  148 (276)
T 3no2_A           81 TARILPDGN-ALVAWCGHPSTILEVNM-KG---------EVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEV  148 (276)
T ss_dssp             EEEECTTSC-EEEEEESTTEEEEEECT-TS---------CEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEE
T ss_pred             ccEECCCCC-EEEEecCCCCEEEEEeC-CC---------CEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEE
Confidence            889999876 6666665 778888775 33         44555432      22345567788988 899999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .+||.. ++  .+..+... ..+.++.+.+++. ++++++.+++|..+|..+++.+.+.-
T Consensus       149 ~~~d~~-G~--~~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          149 REIAPN-GQ--LLNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEECTT-SC--EEEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEECCC-CC--EEEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            999998 77  34444433 3456788899998 57777778899999999898876654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.42  E-value=8.8e-11  Score=110.85  Aligned_cols=226  Identities=9%  Similarity=0.065  Sum_probs=148.8

Q ss_pred             CC-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          206 RE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      ++ ++.++++....+.|..|+..+....                          .   ..+...+.++++++++. ++++
T Consensus        21 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~--------------------------~---~~~~~~~~~i~~~~dG~-l~v~   70 (297)
T 3g4e_A           21 EEVSNSLLFVDIPAKKVCRWDSFTKQVQ--------------------------R---VTMDAPVSSVALRQSGG-YVAT   70 (297)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCCEE--------------------------E---EECSSCEEEEEEBTTSS-EEEE
T ss_pred             ECCCCEEEEEECCCCEEEEEECCCCcEE--------------------------E---EeCCCceEEEEECCCCC-EEEE
Confidence            45 4677788888899999998642210                          0   01345789999999954 4444


Q ss_pred             EecCCcEEEEECCCCeeeEEecc----CCCCeEEEEEcCCCCcEEEEEECC---------CcEEEEeCCCCCCccceEee
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSFD---------RSVVMKDARISTHSGFKWAV  351 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~  351 (502)
                       . ++.|.+||..+++.......    ....+..++++|+| +++++....         ..-.+|.+............
T Consensus        71 -~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~  147 (297)
T 3g4e_A           71 -I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ  147 (297)
T ss_dssp             -E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE
T ss_pred             -E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec
Confidence             4 56899999988865433221    12357889999999 665544321         23455555433322223344


Q ss_pred             cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECC--CCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIR--TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ......++|+|++..++++.+..+.|..|++.  ++...    .......+..+......+++.++| ++.++....+.|
T Consensus       148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~----~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v  222 (297)
T 3g4e_A          148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS----NRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRV  222 (297)
T ss_dssp             ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE----EEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEE
T ss_pred             cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc----CcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEE
Confidence            45678999999987666777778999999974  32100    001122233344567899999998 777877778889


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEc-CCCCcEEEEEeCC
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSK  471 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~llasg~~d  471 (502)
                      .+||..+++.  +..+..+...+++++|. |++..|+++....
T Consensus       223 ~~~d~~tG~~--~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          223 IRLDPVTGKR--LQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEECTTTCCE--EEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEcCCCceE--EEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            9999988873  44445555679999998 8888777766544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.42  E-value=5.1e-11  Score=117.67  Aligned_cols=230  Identities=8%  Similarity=0.012  Sum_probs=153.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +++++++++...++.|++|++.......                           .... ..... ++|++++ ..|+++
T Consensus       139 d~~g~lyv~d~~~~~I~~id~~~g~~~~---------------------------~~~~-~~~~~-ia~~~~g-~~l~~~  188 (409)
T 3hrp_A          139 VGNNTVLAYQRDDPRVRLISVDDNKVTT---------------------------VHPG-FKGGK-PAVTKDK-QRVYSI  188 (409)
T ss_dssp             CSTTEEEEEETTTTEEEEEETTTTEEEE---------------------------EEET-CCBCB-CEECTTS-SEEEEE
T ss_pred             eCCCCEEEEecCCCcEEEEECCCCEEEE---------------------------eecc-CCCCc-eeEecCC-CcEEEE
Confidence            7889988888888999999986422110                           0011 12233 8999994 477777


Q ss_pred             ecCC--cEEEEECCCCeeeEEe----ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc----eEeecCCe
Q 010769          286 SADK--QVKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----KWAVAADV  355 (502)
Q Consensus       286 s~Dg--~v~vwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~v  355 (502)
                      ..++  .|.+|+...+.....+    ......+.+++++|++..+ +.+..++.|+.||..+......    ........
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~l-yv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWL-YFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTN  267 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEE-EEECTTCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeE-EEEECCCcEEEEECCCCCEEEEecccccCCCCCC
Confidence            7755  7999998766543333    2245678899999955254 4477788999999986653221    11111111


Q ss_pred             -E-EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC---------------CCCeeEEEEcCCCCC
Q 010769          356 -E-SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---------------DKAVCTISYNPLVPN  418 (502)
Q Consensus       356 -~-~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~sp~~~~  418 (502)
                       . .++|+|.+..++++...++.|+.|+....           +..+.++               -.....++++|++ .
T Consensus       268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~  335 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-N  335 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-C
T ss_pred             ccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-C
Confidence             2 89999976667777778899999987632           2222222               1347899999998 7


Q ss_pred             EEEEEe-CCCcEEEEECCCCCeeEEEEecC------------CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          419 LLATGS-TDKMVKLWDLSNNQPSCIASRNP------------KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       419 ~l~t~s-~dg~i~vwd~~~~~~~~~~~~~~------------~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      ++++-+ .++.|+.|++.++....+.....            .......+++++++. ++++-..+++|+.+.+
T Consensus       336 lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          336 FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEEEEEe
Confidence            888877 88999999987776333322210            124588999999976 6887778888888765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=9.5e-12  Score=120.42  Aligned_cols=173  Identities=14%  Similarity=0.115  Sum_probs=129.6

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCe-----------eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGK-----------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM  336 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  336 (502)
                      .+..|++++. ..++++|+.+ .+++|++...+           ....+ .+.. |+.|+|  ++ .+|+++ .++.|++
T Consensus        39 ~~nlLais~~-~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~-~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNS-KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HG-DQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETT-TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ET-TEEEEE-ESSEEEE
T ss_pred             cccEEEEcCC-CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CC-CEEEEE-cCCcEEE
Confidence            6899999999 5588888887 46669875432           11222 3556 999999  66 788888 8899999


Q ss_pred             EeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          337 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       337 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      ||+++.........+...+.++.+.+.   .+++++.+|.|.+||+...         ... .   +...|+|++|+|.|
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~---------~~~-~---~~~~Vs~v~WSpkG  174 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTK---------STK-Q---LAQNVTSFDVTNSQ  174 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTC---------CEE-E---EEESEEEEEECSSE
T ss_pred             EEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCC---------ccc-c---ccCCceEEEEcCCc
Confidence            999987655445566777888887763   2888899999999999976         222 1   44689999999976


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCeeEEEEe------c---CCCCCEEEEEEcCCCCcEEEE
Q 010769          417 PNLLATGSTDKMVKLWDLSNNQPSCIASR------N---PKAGAVFSVAFSEDSPFVLAI  467 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~~~~~~~~------~---~~~~~v~~~~~spd~~~llas  467 (502)
                         ++.|..||++++|+...........+      .   +|...|.++.|.+++.++++-
T Consensus       175 ---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          175 ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             ---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence               67899999999998877652112233      2   367889999999999875443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.38  E-value=9.5e-10  Score=103.28  Aligned_cols=229  Identities=9%  Similarity=0.027  Sum_probs=156.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .++|++.++...++.|.+|+.. ... ..                         .....+...+.++++.++ ++++++.
T Consensus        28 d~~g~l~v~~~~~~~v~~~~~~-~~~-~~-------------------------~~~~~~~~~~~~i~~~~~-g~l~v~~   79 (300)
T 2qc5_A           28 SEDGKVWFTQHKANKISSLDQS-GRI-KE-------------------------FEVPTPDAKVMCLIVSSL-GDIWFTE   79 (300)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT-SCE-EE-------------------------EECSSTTCCEEEEEECTT-SCEEEEE
T ss_pred             CCCCCEEEEcCCCCeEEEECCC-Cce-EE-------------------------EECCCCCCcceeEEECCC-CCEEEEe
Confidence            6788888887778999999875 211 10                         011123457889999988 4566666


Q ss_pred             ecCCcEEEEECCCCeeeE-EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe-ecCCeEEEEeCCC
Q 010769          286 SADKQVKIWDVAAGKCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-VAADVESLAWDPH  363 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~v~~~p~  363 (502)
                      ..++.|.+||.. ++... .+......+.++++.+++ .++++...++.|..++.. +........ ....+..+++.++
T Consensus        80 ~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           80 NGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD  156 (300)
T ss_dssp             TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred             cCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC
Confidence            667899999988 55432 223244678999999988 777777668899999986 333221111 2356889999997


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                      +. ++++...++.|..|+. .+.        ........+...+.++++.+++ .+.++....+.|.+|+. +++.. ..
T Consensus       157 g~-l~v~~~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-~~  223 (300)
T 2qc5_A          157 NA-LWFTENQNNSIGRITN-TGK--------LEEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEIS-EY  223 (300)
T ss_dssp             SS-EEEEETTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-EE
T ss_pred             CC-EEEEecCCCeEEEECC-CCc--------EEEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcEE-EE
Confidence            65 6666666789999998 331        1122223344578899999987 77777666778999998 44422 22


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      ....+...+.++++++++. ++++...++.|..|+.
T Consensus       224 ~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          224 DIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITN  258 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECT
T ss_pred             ECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECC
Confidence            3334456789999999998 5666656789999998

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.38  E-value=5.9e-11  Score=114.89  Aligned_cols=175  Identities=13%  Similarity=0.133  Sum_probs=125.1

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++...+|++|+.+ .+.||++.......                .......... ....+.. |+.|+|  + +++|+++
T Consensus        46 s~~~gll~a~~~~-~l~v~~~~~l~~~~----------------~~~~~~~~~~-~~~~lp~-V~~l~f--d-~~~L~v~  103 (388)
T 1xip_A           46 SNSKSLFVAASGS-KAVVGELQLLRDHI----------------TSDSTPLTFK-WEKEIPD-VIFVCF--H-GDQVLVS  103 (388)
T ss_dssp             ETTTTEEEEEETT-EEEEEEHHHHHHHH----------------HSSSCCCCCS-EEEECTT-EEEEEE--E-TTEEEEE
T ss_pred             cCCCCEEEEeCCC-EEEEEEhhHhhhhh----------------ccccccccce-EEeeCCC-eeEEEE--C-CCEEEEE
Confidence            6788899999887 55569875322000                0000001110 1123556 999999  5 5688888


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  365 (502)
                       .++.|++||+.+......+..|...+.++.+.+.   .+++++.||.|.+||+......    .+...|+|++|+|.| 
T Consensus       104 -~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~----~~~~~Vs~v~WSpkG-  174 (388)
T 1xip_A          104 -TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTK----QLAQNVTSFDVTNSQ-  174 (388)
T ss_dssp             -ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEE----EEEESEEEEEECSSE-
T ss_pred             -cCCcEEEEEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCccc----cccCCceEEEEcCCc-
Confidence             8899999999877665666677888988887754   2888899999999999876643    255689999999976 


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCCCCCc--cEEE------e---cCCCCeeEEEEcCCCCCEEEEE
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS--SFTL------H---AHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~------~---~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                        +++|..||.+++|+....         ..  ...+      .   +|...|.+|.|.+++ .++++-
T Consensus       175 --~~vg~~dg~i~~~~~~~~---------~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~y  231 (388)
T 1xip_A          175 --LAVLLKDRSFQSFAWRNG---------EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAVF  231 (388)
T ss_dssp             --EEEEETTSCEEEEEEETT---------EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEEE
T ss_pred             --eEEEEcCCcEEEEcCCCc---------cccccceecCCcccccccCCCeeEEEEEEecCC-eEEEEE
Confidence              678999999999988764         21  2333      2   378899999999987 666663

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.36  E-value=1.8e-10  Score=112.96  Aligned_cols=293  Identities=12%  Similarity=0.070  Sum_probs=175.9

Q ss_pred             CCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec----------CC
Q 010769          149 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----------ME  218 (502)
Q Consensus       149 p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~----------~d  218 (502)
                      |+++.+.++........-.|++++....     .+...+.+...| .+.+       +|+|++|.++.          .+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~-----~vv~~I~vG~~P-gia~-------SpDgk~lyVan~~~~~~~~G~~~  148 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTG-----RILGMTDGGFLP-HPVA-------AEDGSFFAQASTVFERIARGKRT  148 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTT-----EEEEEEEECSSC-EEEE-------CTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCC-----EEEEEEECCCCC-ceEE-------CCCCCEEEEEeccccccccCCCC
Confidence            5556565555421000027777776644     233444555556 5555       89999988886          36


Q ss_pred             CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec--CCcEEEEEC
Q 010769          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIWDV  296 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--Dg~v~vwd~  296 (502)
                      +.|.++|..+......+.+-+.               +    .+ ........+.|+|+++ +|+.+..  +++|.+.|+
T Consensus       149 ~~VsviD~~t~~vv~~I~v~g~---------------~----r~-~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~  207 (426)
T 3c75_H          149 DYVEVFDPVTFLPIADIELPDA---------------P----RF-LVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDL  207 (426)
T ss_dssp             EEEEEECTTTCCEEEEEEETTC---------------C----CC-CBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCc---------------c----cc-ccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEEC
Confidence            7899999986544332221100               0    00 0112356789999955 6666653  689999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc---eEee-cCC-eEEEEeCCCCCCEEEEE
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---KWAV-AAD-VESLAWDPHAEHSFVVS  371 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~-~~~-v~~v~~~p~~~~~l~~~  371 (502)
                      .+++.+.++..-.  .  ....|.+...+++.+.||.+.+.++...+....   .+.. ..+ ...+.|.+++.. ++..
T Consensus       208 ~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~-~~~~  282 (426)
T 3c75_H          208 EGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR-LVWP  282 (426)
T ss_dssp             TTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE-EEEE
T ss_pred             CCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE-EEEE
Confidence            9999988886321  1  334455556777888888888888844433210   0101 011 123467887764 4444


Q ss_pred             eCCCeEEEEECCCCCCCCCCCCCCccEEEe--------cCCCCeeEEEEcCCCCCEEEEEe---------CCCcEEEEEC
Q 010769          372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--------AHDKAVCTISYNPLVPNLLATGS---------TDKMVKLWDL  434 (502)
Q Consensus       372 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~sp~~~~~l~t~s---------~dg~i~vwd~  434 (502)
                      +..+.|.+.|+.......     ...+.+.        ........++++|++.+++++..         ..+.|.++|+
T Consensus       283 s~~g~V~ViD~~~~~~~v-----~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~  357 (426)
T 3c75_H          283 TYTGKIFQADLTAEGATF-----RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA  357 (426)
T ss_dssp             BTTSEEEEEEECSSCEEE-----CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             eCCCcEEEEeccCCceEE-----eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence            567899999986541100     0001110        01112234689999845555433         1357999999


Q ss_pred             CCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCcccccc
Q 010769          435 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       435 ~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~-~dg~i~vwd~~~~~~~~~~  488 (502)
                      .+.+........   ....++.|+|+++.+++++. .++.|.|+|+.+++.++++
T Consensus       358 ~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          358 ETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            999843333322   24788999999983355555 6899999999999998775

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.34  E-value=5.1e-10  Score=106.10  Aligned_cols=243  Identities=10%  Similarity=0.113  Sum_probs=150.9

Q ss_pred             ccccccccCCCceEEE-------EEecCCcceeEEEEEecCCCCCCceeeeec---cccCCCcceeeeecCCCCCCCC-C
Q 010769          141 DLEDMTINPNDAVIVC-------ARNEDDVSHLEVYILEESDGGDPNLYVHHH---IIIPAFPLCMAWLDCPLKDREK-G  209 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~-------~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~w~~~~~~~s~~-~  209 (502)
                      ...+++|.|+++++++       +...+     .|+.|+....   .+.....   ......|.++.+       +++ +
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~-----~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~-------~~~~g   83 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAG-----EILRIDLKTG---KKTVICKPEVNGYGGIPAGCQC-------DRDAN   83 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECC-----EEEEECTTTC---CEEEEECCEETTEECCEEEEEE-------CSSSS
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCC-----EEEEEeCCCC---cEEEEEecccCCCCCCCceEEE-------ecCCC
Confidence            4567889999988887       45555     7777875443   2221111   001234455555       677 6


Q ss_pred             CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC-
Q 010769          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD-  288 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D-  288 (502)
                      +++++.. .+.|.+|+.. +... ... ..                    .....+...+.++++.+++ +++++...+ 
T Consensus        84 ~l~v~~~-~~~l~~~d~~-g~~~-~~~-~~--------------------~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~  138 (314)
T 1pjx_A           84 QLFVADM-RLGLLVVQTD-GTFE-EIA-KK--------------------DSEGRRMQGCNDCAFDYEG-NLWITAPAGE  138 (314)
T ss_dssp             EEEEEET-TTEEEEEETT-SCEE-ECC-SB--------------------CTTSCBCBCCCEEEECTTS-CEEEEECBCB
T ss_pred             cEEEEEC-CCCEEEEeCC-CCEE-EEE-ec--------------------cCCCccccCCcCEEECCCC-CEEEEecCcc
Confidence            6555554 3478889876 3211 000 00                    0001123468899999984 566666554 


Q ss_pred             --------------CcEEEEECCCCeeeEEeccCCCCeEEEEEc----CCCCcEEEEEECCCcEEEEeCC-CCCCcc--c
Q 010769          289 --------------KQVKIWDVAAGKCNLTLEHHTDKVQAVAWN----HHSPQILLSGSFDRSVVMKDAR-ISTHSG--F  347 (502)
Q Consensus       289 --------------g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~----~~~~~~l~s~~~dg~i~vwd~~-~~~~~~--~  347 (502)
                                    +.|..|+.. ++..... .+......++|+    |++..++++...++.|.+|++. .+....  .
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~  216 (314)
T 1pjx_A          139 VAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV  216 (314)
T ss_dssp             CTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred             cccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE
Confidence                          567777765 5543332 234457889999    9883344555568899999986 222111  1


Q ss_pred             eEeec----CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC-EEEE
Q 010769          348 KWAVA----ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLAT  422 (502)
Q Consensus       348 ~~~~~----~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~t  422 (502)
                      .....    ..+..+++++++. ++++...++.|.+||..++         ..+..+..+...+.+++|+|++ + ++++
T Consensus       217 ~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g---------~~~~~~~~~~~~~~~i~~~~dg-~~l~v~  285 (314)
T 1pjx_A          217 WGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGG---------QPKMRIRCPFEKPSNLHFKPQT-KTIFVT  285 (314)
T ss_dssp             EEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCB---------SCSEEEECSSSCEEEEEECTTS-SEEEEE
T ss_pred             EEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCC---------cEeEEEeCCCCCceeEEECCCC-CEEEEE
Confidence            11111    4578899999864 6666667889999998755         4455566666789999999998 6 5556


Q ss_pred             EeCCCcEEEEECCC
Q 010769          423 GSTDKMVKLWDLSN  436 (502)
Q Consensus       423 ~s~dg~i~vwd~~~  436 (502)
                      ...++.|..|++..
T Consensus       286 ~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          286 EHENNAVWKFEWQR  299 (314)
T ss_dssp             ETTTTEEEEEECSS
T ss_pred             eCCCCeEEEEeCCC
Confidence            66678899999865

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.33  E-value=2.4e-10  Score=122.11  Aligned_cols=249  Identities=12%  Similarity=0.054  Sum_probs=154.8

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCC-cceeeeecCCCCCCCCCCEEEEecCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF-PLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~w~~~~~~~s~~~~~la~g~~d  218 (502)
                      ..+..+.|+|+|++||.+...+..-...||+++...+   .....+   ++.. ...+.|       +|+ +.|+.++.+
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg---~~~~~~---~~~~~~~~~~w-------spD-~~l~~~~~~  228 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG---KPLADE---LKWVKFSGLAW-------LGN-DALLYSRFA  228 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC---CEEEEE---EEEEESCCCEE-------STT-SEEEEEECC
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---CCCCcc---CCCceeccEEE-------ECC-CEEEEEEec
Confidence            4678899999999999987664332356777776665   322111   1110 123445       899 988888776


Q ss_pred             Cc--------------EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          219 PA--------------IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       219 g~--------------I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +.              |++|++.+.....                       ........|...+.++.|+|++. +|+.
T Consensus       229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-----------------------~lv~~~~~~~~~~~~~~~SpDG~-~l~~  284 (741)
T 1yr2_A          229 EPKEGQAFQALNYNQTVWLHRLGTPQSAD-----------------------QPVFATPELPKRGHGASVSSDGR-WVVI  284 (741)
T ss_dssp             CC--------CCCCCEEEEEETTSCGGGC-----------------------EEEECCTTCTTCEEEEEECTTSC-EEEE
T ss_pred             CcccccccccCCCCCEEEEEECCCCchhC-----------------------EEEeccCCCCeEEEEEEECCCCC-EEEE
Confidence            54              8888875432110                       11112223444688999999955 5665


Q ss_pred             EecC-----CcEEEEECCCC--eeeEEeccCCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEeCCCCC-CccceEe-e
Q 010769          285 ASAD-----KQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSF----DRSVVMKDARIST-HSGFKWA-V  351 (502)
Q Consensus       285 gs~D-----g~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~~~~~~~-~  351 (502)
                      .+.+     ..|++||+.++  ++...+..+...+....+ |++ ..|+..+.    ++.|.+|++.++. ....... .
T Consensus       285 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~  362 (741)
T 1yr2_A          285 TSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD-GVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES  362 (741)
T ss_dssp             EEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE-EET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC
T ss_pred             EEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe-ccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC
Confidence            5544     38999999877  314555555555555544 777 55555554    3459999988742 2222222 2


Q ss_pred             cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEEEeC---CC
Q 010769          352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGST---DK  427 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~---dg  427 (502)
                      ...+..+.|.  +..++++...++..++|.+...        ......+.. +...+..++++|++..++++.+.   .+
T Consensus       363 ~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~--------g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  432 (741)
T 1yr2_A          363 KDNLESVGIA--GNRLFASYIHDAKSQVLAFDLD--------GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPA  432 (741)
T ss_dssp             SSEEEEEEEE--BTEEEEEEEETTEEEEEEEETT--------SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEE
T ss_pred             CCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCC--------CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence            3346677776  4557888888998777765422        133444443 35678899999988555555443   47


Q ss_pred             cEEEEECCCCC
Q 010769          428 MVKLWDLSNNQ  438 (502)
Q Consensus       428 ~i~vwd~~~~~  438 (502)
                      +|++||+.+++
T Consensus       433 ~i~~~d~~tg~  443 (741)
T 1yr2_A          433 TVLALDPATAK  443 (741)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCc
Confidence            89999998876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.30  E-value=1.9e-10  Score=121.79  Aligned_cols=236  Identities=15%  Similarity=0.100  Sum_probs=148.5

Q ss_pred             CCCCCEEEEe-----cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCc
Q 010769          206 REKGNFMAVG-----SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN  280 (502)
Q Consensus       206 s~~~~~la~g-----~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  280 (502)
                      ||+|++||.+     +....|+|||+.++..+..                          .  .+......++|+ ++ .
T Consensus       137 SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--------------------------~--~~~~k~~~~~Ws-Dg-~  186 (693)
T 3iuj_A          137 SRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--------------------------P--LKDVKFSGISWL-GN-E  186 (693)
T ss_dssp             CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--------------------------E--EEEEESCCCEEE-TT-T
T ss_pred             CCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--------------------------c--cCCceeccEEEe-CC-C
Confidence            8999999953     3336799999986542110                          0  011113578899 85 4


Q ss_pred             EEEEEecCC-------------cEEEEECCCCe----eeEEecc-CCCCeEEEEEcCCCCcEEEEEEC---CCcEEEEeC
Q 010769          281 ILASASADK-------------QVKIWDVAAGK----CNLTLEH-HTDKVQAVAWNHHSPQILLSGSF---DRSVVMKDA  339 (502)
Q Consensus       281 ~l~sgs~Dg-------------~v~vwd~~~~~----~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~  339 (502)
                      .|+.++.+.             .|++|++.++.    ++..... |...+.++.|+|++..++++.+.   .+.|.++|+
T Consensus       187 ~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  266 (693)
T 3iuj_A          187 GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDL  266 (693)
T ss_dssp             EEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEET
T ss_pred             EEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEEC
Confidence            666666664             39999998764    3333344 55567899999999545455543   258999999


Q ss_pred             CCCCC-ccceEeecCCeEEEEeCCCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          340 RISTH-SGFKWAVAADVESLAWDPHAEHSFVVSLED---GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       340 ~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      .++.. .............. |++++..+++.+..+   +.|..+++.+..       ......+..|...+.  .|+++
T Consensus       267 ~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~-------~~~~~~l~~~~~~~~--~~s~~  336 (693)
T 3iuj_A          267 SQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG-------PAHWRDLIPERQQVL--TVHSG  336 (693)
T ss_dssp             TSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC-------GGGCEEEECCCSSCE--EEEEE
T ss_pred             CCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC-------ccccEEEecCCCCEE--EEEEE
Confidence            87642 22233333444444 666677666666543   679999998752       112345666666655  88888


Q ss_pred             CCCEEEEEeCCC--cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCc
Q 010769          416 VPNLLATGSTDK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK---GKLEIWDTLSDA  483 (502)
Q Consensus       416 ~~~~l~t~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d---g~i~vwd~~~~~  483 (502)
                      +..++++...++  .|++|++..... ....+ ...+.+..+.+++++..++++.++.   +.|+.||+.+++
T Consensus       337 g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          337 SGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            844444444555  588999875542 22222 2446688888899988655554432   789999997765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.28  E-value=3.3e-09  Score=101.42  Aligned_cols=223  Identities=12%  Similarity=0.049  Sum_probs=141.2

Q ss_pred             CCC-CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          206 REK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +|+ +.+++++...+.|.+|+......                        .  ..   .+...+.+++|++++ .++++
T Consensus        57 ~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------~--~~---~~~~~v~~i~~~~dg-~l~v~  106 (326)
T 2ghs_A           57 DPASGTAWWFNILERELHELHLASGRK------------------------T--VH---ALPFMGSALAKISDS-KQLIA  106 (326)
T ss_dssp             ETTTTEEEEEEGGGTEEEEEETTTTEE------------------------E--EE---ECSSCEEEEEEEETT-EEEEE
T ss_pred             eCCCCEEEEEECCCCEEEEEECCCCcE------------------------E--EE---ECCCcceEEEEeCCC-eEEEE
Confidence            565 66777777789999999864211                        0  00   123568999999994 45554


Q ss_pred             EecCCcEEEEECCCCeeeEEecc----CCCCeEEEEEcCCCCcEEEEEEC------CCcEEEEeCCCCCCccceEeecCC
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSF------DRSVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~  354 (502)
                       +. ..|.+||..+++.......    ....+..+.++|+| +++++...      .+.|..++  .++. .........
T Consensus       107 -~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~  180 (326)
T 2ghs_A          107 -SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISI  180 (326)
T ss_dssp             -ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESS
T ss_pred             -EC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcc
Confidence             44 4599999988875433221    12358899999999 66555432      24555555  3322 222233345


Q ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEECC--CC-CCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIR--TA-KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL  431 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v  431 (502)
                      ...++|+|++..++++.+.++.|.+|++.  ++ ....    ......+........++++.++| .+.++....+.|.+
T Consensus       181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~----~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~  255 (326)
T 2ghs_A          181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDR  255 (326)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEE
T ss_pred             cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC----ceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEE
Confidence            78899999987555666678899999986  32 1100    01122222334567889999988 77776666788999


Q ss_pred             EECCCCCeeEEEEecCCCCCEEEEEEc-CCCCcEEEEEeCCC
Q 010769          432 WDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSKG  472 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~llasg~~dg  472 (502)
                      |+. +++  .+..+..+...+++++|+ |++..++++....+
T Consensus       256 ~d~-~g~--~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          256 YDT-DGN--HIARYEVPGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             ECT-TCC--EEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             ECC-CCC--EEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence            998 454  233444455679999998 88886666655553

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.27  E-value=1e-09  Score=116.28  Aligned_cols=254  Identities=12%  Similarity=0.103  Sum_probs=159.0

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCC-cceeeeecCCCCCCCCCCEEEEec
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF-PLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      +...+..+.|||+|++||.+...+..-...||+++...+   .....+   ++.. ...+.|       + |++.|+.++
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg---~~~~~~---~~~~k~~~~~W-------s-Dg~~l~y~~  192 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK---QPLETP---LKDVKFSGISW-------L-GNEGFFYSS  192 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC---SEEEEE---EEEEESCCCEE-------E-TTTEEEEEE
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC---CCCccc---cCCceeccEEE-------e-CCCEEEEEE
Confidence            445678889999999999877544332357777776655   322111   1111 123445       8 899999888


Q ss_pred             CCC-------------cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCC-cccceeeEEecCCCCcEE
Q 010769          217 MEP-------------AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       217 ~dg-------------~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l  282 (502)
                      .+.             .|++|++.+.....                       ........ |...+.++.|+|+++.++
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-----------------------~~v~~~~~~~~~~~~~~~~SpDg~~l~  249 (693)
T 3iuj_A          193 YDKPDGSELSARTDQHKVYFHRLGTAQEDD-----------------------RLVFGAIPAQHHRYVGATVTEDDRFLL  249 (693)
T ss_dssp             SSCCC-------CCCCEEEEEETTSCGGGC-----------------------EEEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred             ecCcccccccccCCCcEEEEEECCCCcccc-----------------------eEEEecCCCCCeEEEEEEEcCCCCEEE
Confidence            774             38888886432111                       11122223 455678899999976555


Q ss_pred             EEEecC---CcEEEEECCCCe-eeEEeccCCCCeEEEEEcCCCCcEEEEEECC---CcEEEEeCCCCCCc--cceEeecC
Q 010769          283 ASASAD---KQVKIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHS--GFKWAVAA  353 (502)
Q Consensus       283 ~sgs~D---g~v~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~--~~~~~~~~  353 (502)
                      ++.+.+   ..|++||+.++. ....+..+....... |++++..+++++..+   +.|.++++.++...  .....+..
T Consensus       250 ~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  328 (693)
T 3iuj_A          250 ISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ  328 (693)
T ss_dssp             EEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred             EEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence            555432   589999998763 345555566666555 666665666666554   67999999876541  22344444


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEe-cCCCCeeEEEEcCCCCCEEEEEeC---CC
Q 010769          354 DVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYNPLVPNLLATGST---DK  427 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~t~s~---dg  427 (502)
                      .+.  .|++++..++++...+|  .|++|++...          ....+. ...+.+..+.+++++..++++.+.   -+
T Consensus       329 ~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~----------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~  396 (693)
T 3iuj_A          329 QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK----------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPP  396 (693)
T ss_dssp             SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC----------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCC
T ss_pred             CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC----------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCC
Confidence            454  88888776666666666  5888887643          223332 234567778888888566665543   27


Q ss_pred             cEEEEECCCCCeeE
Q 010769          428 MVKLWDLSNNQPSC  441 (502)
Q Consensus       428 ~i~vwd~~~~~~~~  441 (502)
                      .|+.||+.+++...
T Consensus       397 ~l~~~d~~~g~~~~  410 (693)
T 3iuj_A          397 TLYRFEPKSGAISL  410 (693)
T ss_dssp             EEEEECTTTCCEEE
T ss_pred             EEEEEECCCCeEEE
Confidence            89999998876433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=4.3e-10  Score=108.45  Aligned_cols=282  Identities=13%  Similarity=0.054  Sum_probs=165.8

Q ss_pred             ccccccccCCCceEEEEEe-cCCcceeEEEEEecCCCCCCceeeee-----ccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769          141 DLEDMTINPNDAVIVCARN-EDDVSHLEVYILEESDGGDPNLYVHH-----HIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~-~~~~~~l~v~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~w~~~~~~~s~~~~~la~  214 (502)
                      ..+.++++|+|+++++... .+..  ..||.++  .+   .+...-     ....-..|.++.+       +++++++++
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~--~~l~~~~--~g---~~~~~p~~~~~~~~~~~~p~gv~~-------d~~g~L~v~   83 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPE--MQVAELT--QD---GLIPFPPQSGNAIITFDTVLGIKS-------DGNGIVWML   83 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCS--CSEEEEE--TT---EEEESCCCCSSCCCCCSCEEEEEE-------CSSSEEEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCc--eEEEEEC--CC---CeecCCCcccCcccceeEeeEEEE-------cCCCcEEEE
Confidence            5678899999999888642 2211  5677776  22   222110     0000122344444       678887776


Q ss_pred             ecC-----CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe---
Q 010769          215 GSM-----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS---  286 (502)
Q Consensus       215 g~~-----dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs---  286 (502)
                      -..     .+.|.+||+.++.....+. +.                    .....+...+..+++.++++.++++.+   
T Consensus        84 D~g~~~~~~~~i~~~d~~tg~~~~~~~-~~--------------------~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           84 DNGNQSKSVPKLVAWDTLNNQLSRVIY-LP--------------------PPITLSNSFVNDLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             ECHHHHTSCCEEEEEETTTTEEEEEEE-CC--------------------TTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred             cCCCCcCCCCeEEEEECCCCeEEEEEE-CC--------------------hhhcccccccceEEEecCCCEEEEEcCccC
Confidence            543     5789999987543221110 00                    001123356789999986565666666   


Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeE-EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  365 (502)
                      .++.|.+||+.+++..+.+.+|..... ...+.+++ ..+.+.+.++.+..|.              ..+..++|+|++.
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~  207 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH--------------LGVNGIVLDAENE  207 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETT-EECBEECTTSCEECCC--------------CCEEEEEECTTSC
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECC-EEEEeccCCCceecee--------------cccceeEeccCCC
Confidence            688999999998887777765432111 12334455 5566667777765543              2357799999876


Q ss_pred             CEEEEEeCC-CeEEEEECCCCCCCCCCCCCC--ccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769          366 HSFVVSLED-GTIKGFDIRTAKSDPDSTSQQ--SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       366 ~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                       .++++... ..|..++........ .....  ......++......++++++| .++++...++.|.+||..+++...+
T Consensus       208 -~ly~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~  284 (343)
T 2qe8_A          208 -WLYLSPMHSTSMYRIKSADLSNLQ-LTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLL  284 (343)
T ss_dssp             -EEEEEESSCSEEEEEEHHHHTCTT-CCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             -EEEEEeCCCCeEEEEEHHHhcCCC-CChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEE
Confidence             45555444 466666643110000 00000  011222445567789999997 8888888899999999855553333


Q ss_pred             EEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vw  477 (502)
                      .. ..+...+.+++|.+++. ++++.+..+.+.+|
T Consensus       285 ~~-~~~~~~p~~va~~~~g~-l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          285 VT-DEKLSWTDSFNFGSDGY-LYFDCNQLHHSAPL  317 (343)
T ss_dssp             EE-CGGGSCEEEEEECTTSC-EEEEECCGGGSGGG
T ss_pred             EE-CCceecCCeeEECCCCc-EEEEeCcccccccc
Confidence            32 22345689999999987 67776655444333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.23  E-value=6e-09  Score=102.78  Aligned_cols=239  Identities=11%  Similarity=0.059  Sum_probs=152.2

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      .....++|+|+++++++....+     .|+.++....   .+......  ...|. +.|       ++++++|+++..++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~-----~I~~id~~~g---~~~~~~~~--~~~~~-ia~-------~~~g~~l~~~d~~~  192 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDP-----RVRLISVDDN---KVTTVHPG--FKGGK-PAV-------TKDKQRVYSIGWEG  192 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTT-----EEEEEETTTT---EEEEEEET--CCBCB-CEE-------CTTSSEEEEEBSST
T ss_pred             CCceEEEEeCCCCEEEEecCCC-----cEEEEECCCC---EEEEeecc--CCCCc-eeE-------ecCCCcEEEEecCC
Confidence            3567889999999777776544     7777776544   33222111  11222 444       78899988888766


Q ss_pred             --cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          220 --AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       220 --~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                        .|.+|+........   .++                    .....+...+.+++++|+++ .|+.+..++.|+.||+.
T Consensus       193 ~~~I~~~d~~~~~~~~---~~g--------------------~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~  248 (409)
T 3hrp_A          193 THTVYVYMKASGWAPT---RIG--------------------QLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVK  248 (409)
T ss_dssp             TCEEEEEEGGGTTCEE---EEE--------------------ECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETT
T ss_pred             CceEEEEEcCCCceeE---Eee--------------------eccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECC
Confidence              67777764211100   000                    00011345678999999545 44457778899999998


Q ss_pred             CCeeeEE----eccCCCCe--EEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee---------------cCCeE
Q 010769          298 AGKCNLT----LEHHTDKV--QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---------------AADVE  356 (502)
Q Consensus       298 ~~~~~~~----~~~h~~~v--~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~v~  356 (502)
                      ++.....    ..++...-  ..++|+|++..++++-..++.|+.|+....  .......               -....
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~  326 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPN  326 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence            7754322    22222222  399999965477777778899999987643  1112221               13478


Q ss_pred             EEEeCCCCCCEEEEEe-CCCeEEEEECCCCCCCCCCCCCCccEEEecC---------------CCCeeEEEEcCCCCCEE
Q 010769          357 SLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---------------DKAVCTISYNPLVPNLL  420 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~sp~~~~~l  420 (502)
                      .++++|++. ++++-+ .++.|+.|++..+          .+..+.++               -.....+++++++ .++
T Consensus       327 gia~d~dG~-lyvad~~~~~~I~~~~~~~G----------~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~ly  394 (409)
T 3hrp_A          327 GMTVDEDGN-FYIVDGFKGYCLRKLDILDG----------YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYW  394 (409)
T ss_dssp             EEEECTTCC-EEEEETTTTCEEEEEETTTT----------EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEE
T ss_pred             EEEEeCCCC-EEEEeCCCCCEEEEEECCCC----------EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEE
Confidence            999999876 677777 7899999997654          23333333               2357889999986 788


Q ss_pred             EEEeCCCcEEEEEC
Q 010769          421 ATGSTDKMVKLWDL  434 (502)
Q Consensus       421 ~t~s~dg~i~vwd~  434 (502)
                      ++-..++.|+.+++
T Consensus       395 Vad~~n~~Ir~i~~  408 (409)
T 3hrp_A          395 IAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEESTTCEEEEEEE
T ss_pred             EEECCCCeEEEEEe
Confidence            88888888887764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.22  E-value=1.7e-08  Score=98.18  Aligned_cols=241  Identities=10%  Similarity=0.011  Sum_probs=147.5

Q ss_pred             cccccCCCceEEEEEecCC-----cceeEEEEEecCCCCCCceeeeeccccC--------CCcceeeeecCCCCCCCCCC
Q 010769          144 DMTINPNDAVIVCARNEDD-----VSHLEVYILEESDGGDPNLYVHHHIIIP--------AFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~~~-----~~~l~v~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~w~~~~~~~s~~~~  210 (502)
                      .+.++|+++.|.++.....     ...=.|.+|+....   ..  -....++        ..|..+.|       +|+|+
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~---~~--~~~i~~~~~~~~~~g~~p~~~~~-------spDG~  137 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF---LP--IADIELPDAPRFDVGPYSWMNAN-------TPNNA  137 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC---cE--EEEEECCCccccccCCCccceEE-------CCCCC
Confidence            8999999999998863100     00014556665432   21  1212221        23444444       89999


Q ss_pred             EEEEecC--CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          211 FMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       211 ~la~g~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      +|++++.  ++.|.++| .+......                        .  . ...   .|+.+.|.+...+++.+.|
T Consensus       138 ~l~v~n~~~~~~v~viD-~t~~~~~~------------------------~--i-~~~---~~~~~~~~~~~~~~~~~~d  186 (373)
T 2mad_H          138 DLLFFQFAAGPAVGLVV-QGGSSDDQ------------------------L--L-SSP---TCYHIHPGAPSTFYLLCAQ  186 (373)
T ss_pred             EEEEEecCCCCeEEEEE-CCCCEEeE------------------------E--c-CCC---ceEEEEeCCCceEEEEcCC
Confidence            9999874  47899999 76432111                        0  0 011   1244556656677888899


Q ss_pred             CcEEEEECCCCeeeEEec-----cCCCCe-EEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEe-----------
Q 010769          289 KQVKIWDVAAGKCNLTLE-----HHTDKV-QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWA-----------  350 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~-----~h~~~v-~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~-----------  350 (502)
                      |.+.+++. +++.+....     ....++ ....+.+++..++++ +..+.+.+.|+....... ..+.           
T Consensus       187 g~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~  264 (373)
T 2mad_H          187 GGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTW  264 (373)
T ss_pred             CCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccce
Confidence            99999999 887663322     111221 234556666344444 467899999987543211 1111           


Q ss_pred             ecCCeEEEEeCCCCCCEEEEEe---------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEE
Q 010769          351 VAADVESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                      .......+.++|++..++++..         ..+.|.++|+.+.         +.+.++.. .....+++|+|++..+++
T Consensus       265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------~vv~~i~~-g~~p~~i~~s~Dg~~~l~  334 (373)
T 2mad_H          265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQISL-GHDVDAISVAQDGGPDLY  334 (373)
T ss_pred             ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------EEEEEEEC-CCCcCeEEECCCCCeEEE
Confidence            1223445788998774444432         2357999999886         56666643 345899999999843777


Q ss_pred             EEe-CCCcEEEEECCCCCe
Q 010769          422 TGS-TDKMVKLWDLSNNQP  439 (502)
Q Consensus       422 t~s-~dg~i~vwd~~~~~~  439 (502)
                      ++. .++.|.+||+.+++.
T Consensus       335 v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          335 ALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             EEcCCCCeEEEEECCCCCE
Confidence            776 589999999999884

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.21  E-value=5.5e-09  Score=98.44  Aligned_cols=208  Identities=9%  Similarity=0.051  Sum_probs=137.8

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      +..-.-+..|+++.+.++++....+.|..||..+++. ..+. ....+.++++++++ ++++ +. ++.|.+||..++..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG-~l~v-~~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSG-GYVA-TI-GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTS-SEEE-EE-TTEEEEEETTTTEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCC-CEEE-EE-CCeEEEEECCCCcE
Confidence            3345668899997677888888889999999988765 3333 45689999999999 6444 44 56899999886654


Q ss_pred             ccceEee----cCCeEEEEeCCCCCCEEEEEeC---------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEE
Q 010769          345 SGFKWAV----AADVESLAWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS  411 (502)
Q Consensus       345 ~~~~~~~----~~~v~~v~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  411 (502)
                      .......    ...+..++++|++. ++++...         ...-.+|.+...         ..+..+..+....+.++
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~---------g~~~~~~~~~~~pngi~  155 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD---------HHVKKYFDQVDISNGLD  155 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT---------SCEEEEEEEESBEEEEE
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC---------CCEEEEeeccccccceE
Confidence            3211111    13478899999876 4443322         122344444322         11222333344568999


Q ss_pred             EcCCCCCEEEEEeCCCcEEEEEC--CCCCee---EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          412 YNPLVPNLLATGSTDKMVKLWDL--SNNQPS---CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       412 ~sp~~~~~l~t~s~dg~i~vwd~--~~~~~~---~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      |+|++..++++.+..+.|.+|++  .++...   ....+..+.+....++++++|. +.++....+.|.+||..+++.+.
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCEEE
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceEEE
Confidence            99998445566777889999997  444421   2223333346788999999997 67777777889999998888765


Q ss_pred             cc
Q 010769          487 NR  488 (502)
Q Consensus       487 ~~  488 (502)
                      .+
T Consensus       235 ~i  236 (297)
T 3g4e_A          235 TV  236 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.20  E-value=5.9e-09  Score=100.46  Aligned_cols=259  Identities=10%  Similarity=0.061  Sum_probs=155.1

Q ss_pred             cccccCCCceEEEEEecC-----CcceeEEEEEecCCCCCCceeeeeccccC--------CCcceeeeecCCCCCCCCCC
Q 010769          144 DMTINPNDAVIVCARNED-----DVSHLEVYILEESDGGDPNLYVHHHIIIP--------AFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~~-----~~~~l~v~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~w~~~~~~~s~~~~  210 (502)
                      .+.++|+++.|.++....     .-..-.|.+|+....   .  .-..+.++        ..|..+.+       +|+|+
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~---~--v~~~I~v~~g~r~~~g~~P~~~a~-------spDGk  149 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL---L--PTADIELPDAPRFLVGTYPWMTSL-------TPDGK  149 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---C--EEEEEEETTCCCCCBSCCGGGEEE-------CTTSS
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC---e--EEEEEECCCccccccCCCCceEEE-------cCCCC
Confidence            389999999988775310     000115667776543   2  22222232        24555554       89999


Q ss_pred             EEEEecC--CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          211 FMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       211 ~la~g~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      +|.++..  ++.|.|+|+.+...+..+.                         ..+      |..+.|.+...+++.+.|
T Consensus       150 ~lyVan~~~~~~VsVID~~t~~vv~tI~-------------------------v~g------~~~~~P~g~~~~~~~~~D  198 (386)
T 3sjl_D          150 TLLFYQFSPAPAVGVVDLEGKAFKRMLD-------------------------VPD------CYHIFPTAPDTFFMHCRD  198 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEE-------------------------CCS------EEEEEEEETTEEEEEETT
T ss_pred             EEEEEEcCCCCeEEEEECCCCcEEEEEE-------------------------CCC------cceeecCCCceeEEECCC
Confidence            9988864  6899999997643222110                         001      112335545677788899


Q ss_pred             CcEEEEECCC-CeeeEEeccC----CCCeE-EEEEc-CCCCcEEEEEECCCcEEEEeCCCCCCc-cceEe----------
Q 010769          289 KQVKIWDVAA-GKCNLTLEHH----TDKVQ-AVAWN-HHSPQILLSGSFDRSVVMKDARISTHS-GFKWA----------  350 (502)
Q Consensus       289 g~v~vwd~~~-~~~~~~~~~h----~~~v~-~l~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~----------  350 (502)
                      |++.+.++.+ ++...+...+    ..++. ...|. ++| ++++ .+.+|.|++.|+.+.... ...+.          
T Consensus       199 G~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g  276 (386)
T 3sjl_D          199 GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG  276 (386)
T ss_dssp             SCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred             CCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceecccccccccc
Confidence            9999999976 5543322111    12222 23554 555 5444 666899999999765431 11111          


Q ss_pred             -ecCCeEEEEeCCCCCCEEEEEeC---------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769          351 -VAADVESLAWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       351 -~~~~v~~v~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                       .......+++++++..++++...         .+.|.++|+.+.         +.+..+... ..+.+|++++++..+|
T Consensus       277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---------kv~~~i~vg-~~~~~lavs~D~~~~l  346 (386)
T 3sjl_D          277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------ERLAKFEMG-HEIDSINVSQDEKPLL  346 (386)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEEE-EEECEEEECSSSSCEE
T ss_pred             ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---------eEEEEEECC-CCcceEEECCCCCeEE
Confidence             12344457778887754444321         257999999987         566665532 3678999999984366


Q ss_pred             EEE-eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          421 ATG-STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       421 ~t~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      +++ ..++.|.++|..+++........+|   -+.|.+++|
T Consensus       347 y~tn~~~~~VsViD~~t~k~~~~i~~~~~---p~~l~~s~d  384 (386)
T 3sjl_D          347 YALSTGDKTLYIHDAESGEELRSVNQLGH---GPQVITTAD  384 (386)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECCCCS---SCCEEEECC
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEecCCCC---CceeEECCc
Confidence            554 5589999999999984433333333   334555554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.17  E-value=9.4e-10  Score=106.15  Aligned_cols=266  Identities=11%  Similarity=-0.025  Sum_probs=159.5

Q ss_pred             EEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec----------CCCcEEEeeCCCCCCCCcee
Q 010769          167 EVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----------MEPAIEIWDLDVIDEVQPHV  236 (502)
Q Consensus       167 ~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~----------~dg~I~iwdl~~~~~~~~~~  236 (502)
                      .|++++....   .  +-+...+...| .+..       +|+++++.++.          .++.|.+||+.+......+.
T Consensus        47 ~vsvID~~t~---~--v~~~i~vG~~P-~i~~-------spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~  113 (368)
T 1mda_H           47 ENWVSCAGCG---V--TLGHSLGAFLS-LAVA-------GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             EEEEEETTTT---E--EEEEEEECTTC-EEEE-------CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             eEEEEECCCC---e--EEEEEeCCCCC-ceEE-------CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            7778876654   2  33445555556 5544       89999998886          36889999998765443322


Q ss_pred             eeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec--CCcEEE--EECCCCeeeEEeccCCCCe
Q 010769          237 ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKI--WDVAAGKCNLTLEHHTDKV  312 (502)
Q Consensus       237 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--Dg~v~v--wd~~~~~~~~~~~~h~~~v  312 (502)
                      +-++               .+   ..  .......++++|+++ +|+.+..  ...|.+  +|+.+   +..+.. .+. 
T Consensus       114 v~~~---------------~~---~~--~g~~P~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~-  167 (368)
T 1mda_H          114 LPDA---------------PR---FS--VGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC-  167 (368)
T ss_dssp             ETTS---------------CS---CC--BSCCTTSEEECTTSS-CEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC-
T ss_pred             CCCc---------------cc---cc--cCCCcceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc-
Confidence            1100               00   00  012356899999955 5666653  467888  99877   444431 111 


Q ss_pred             EEEEEcCCCCcEEEEEECCCcEEEEeCCC-----CCCcc---ceEee-cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECC
Q 010769          313 QAVAWNHHSPQILLSGSFDRSVVMKDARI-----STHSG---FKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  383 (502)
Q Consensus       313 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~---~~~~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~  383 (502)
                        ....|.+...+++.+.||.+.+.++.+     ++...   ..+.. ..+.   . .+++..++++. . +.|.+.|+.
T Consensus       168 --~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs-~-~~V~viD~~  239 (368)
T 1mda_H          168 --FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV-A-SSILQGDIP  239 (368)
T ss_dssp             --CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB-S-SCCEEEECC
T ss_pred             --eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc-C-CEEEEEECC
Confidence              223456656777778889888888876     22211   01111 1222   3 45455444444 4 899999986


Q ss_pred             CCCCCCCCCCCCccEEEe-------c---CCCCeeEEEEcCCCCCEEEEEe---C-----CCcEEEEECCCCCeeEEEEe
Q 010769          384 TAKSDPDSTSQQSSFTLH-------A---HDKAVCTISYNPLVPNLLATGS---T-----DKMVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~-------~---h~~~v~~l~~sp~~~~~l~t~s---~-----dg~i~vwd~~~~~~~~~~~~  445 (502)
                      ....       ..+..+.       .   +......++++|++.+++++..   .     .+.+.++|+.+.+.  +..+
T Consensus       240 ~~~~-------~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--v~~i  310 (368)
T 1mda_H          240 AAGA-------TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPI  310 (368)
T ss_dssp             SSCC-------EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECC
T ss_pred             CCcc-------eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE--EEEE
Confidence            5310       1111110       0   1112223689999844444433   2     23566999999874  3333


Q ss_pred             cCCCCCEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCccccccc
Q 010769          446 NPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       446 ~~~~~~v~~~~~spd~~~llasg~-~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ... ....+++|+|++++++++.. .++.|.++|+.+++.+.++-
T Consensus       311 ~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          311 SNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             ECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            222 25889999999987788887 69999999999999887664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.11  E-value=6.6e-08  Score=89.38  Aligned_cols=207  Identities=8%  Similarity=0.065  Sum_probs=138.1

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      ..+.+++|++.++.++++-...+.|.++++..+.....+.........+++++.+..++++-...+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            35789999997566666767788999999876654433333335788999999764666666677899999987543221


Q ss_pred             ceEee-cCCeEEEEeCCCCCCEEEEEeC--CCeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEEEE
Q 010769          347 FKWAV-AADVESLAWDPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       347 ~~~~~-~~~v~~v~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                       .... ......++++|.+..++++...  .+.|..+++...          ....+ ...-.....++++|++..++++
T Consensus       116 -~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~----------~~~~~~~~~~~~P~gia~d~~~~~lyv~  184 (267)
T 1npe_A          116 -LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT----------NRRILAQDNLGLPNGLTFDAFSSQLCWV  184 (267)
T ss_dssp             -EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC----------CCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             -EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC----------CcEEEEECCCCCCcEEEEcCCCCEEEEE
Confidence             2221 2457899999976644555433  478888887643          11222 1223457899999987456666


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      -...+.|.++++.......+.  .. ......++..  +.+++++....+.|.+++..+++.+..+.
T Consensus       185 d~~~~~I~~~~~~g~~~~~~~--~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          185 DAGTHRAECLNPAQPGRRKVL--EG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             ETTTTEEEEEETTEEEEEEEE--EC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCEEEEEecCCCceEEEe--cC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            667789999999765422222  22 2345667664  44567766677899999999888776654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.08  E-value=3.5e-08  Score=94.20  Aligned_cols=197  Identities=12%  Similarity=0.096  Sum_probs=130.2

Q ss_pred             eeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce
Q 010769          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  348 (502)
                      ..+..|+|+++.++++...++.|.+||..+++.. .+. ....+.++.|++++ +++++ +.+ .|.+||..++.... .
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~g~~~~-~  124 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTL-H  124 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEE-E
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCCCcEEE-E
Confidence            4577899986677888888899999999887643 333 34679999999998 65554 444 49999987765432 1


Q ss_pred             Eee-----cCCeEEEEeCCCCCCEEEEEeC------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769          349 WAV-----AADVESLAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       349 ~~~-----~~~v~~v~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      ...     ...+..++++|++. ++++...      .+.|..++  .+         .. ..+..+......++|+|++.
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g---------~~-~~~~~~~~~~~~i~~s~dg~  191 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KG---------KV-TKLFADISIPNSICFSPDGT  191 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TT---------EE-EEEEEEESSEEEEEECTTSC
T ss_pred             eeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CC---------cE-EEeeCCCcccCCeEEcCCCC
Confidence            111     13478899999876 4444332      24566666  33         21 22222334567899999984


Q ss_pred             CEEEEEeCCCcEEEEECC--CC-Ce---eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          418 NLLATGSTDKMVKLWDLS--NN-QP---SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~--~~-~~---~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      .++++.+.++.|.+|++.  ++ ..   ..+..+....+.+..++++++|. ++++....+.|.+|+. +++.+.
T Consensus       192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g~~~~  264 (326)
T 2ghs_A          192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIA  264 (326)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCEEE
T ss_pred             EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECC-CCCEEE
Confidence            444555667899999986  44 31   12333333445678999999998 5665556678999998 455443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.07  E-value=2.5e-08  Score=94.21  Aligned_cols=223  Identities=15%  Similarity=0.108  Sum_probs=136.8

Q ss_pred             CCCCC-EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          206 REKGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +++++ +++++..++.|..|+... . ..                           .+..+...+.++++.+++ +++++
T Consensus        53 ~~~g~~l~~~d~~~~~i~~~~~~g-~-~~---------------------------~~~~~~~~~~gl~~d~dG-~l~v~  102 (305)
T 3dr2_A           53 WEAQRTLVWSDLVGRRVLGWREDG-T-VD---------------------------VLLDATAFTNGNAVDAQQ-RLVHC  102 (305)
T ss_dssp             EGGGTEEEEEETTTTEEEEEETTS-C-EE---------------------------EEEESCSCEEEEEECTTS-CEEEE
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCC-C-EE---------------------------EEeCCCCccceeeECCCC-CEEEE
Confidence            57787 677777889999998732 1 10                           111244568899999994 46655


Q ss_pred             EecCCcEEEEECCCCeeeEEecc----CCCCeEEEEEcCCCCcEEEE----EEC-------------CCcEEEEeCCCCC
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLS----GSF-------------DRSVVMKDARIST  343 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~  343 (502)
                      ...++.|.+|+.. ++.......    ....+..+++.++| +++++    |..             .+.|..||..+++
T Consensus       103 ~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~  180 (305)
T 3dr2_A          103 EHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP  180 (305)
T ss_dssp             ETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred             ECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence            5556789999986 553322211    12346789999999 77775    332             2567778776665


Q ss_pred             CccceEeecCCeEEEEeCCCCCCEEEEEeCC------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      .....  .......++|+|++. .++++...      +.|.+|++.....      ................+++.++| 
T Consensus       181 ~~~~~--~~~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~l------~~~~~~~~~~~~~pdgi~~d~~G-  250 (305)
T 3dr2_A          181 LQRMA--DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGAL------HDRRHFASVPDGLPDGFCVDRGG-  250 (305)
T ss_dssp             CEEEE--EESSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTEE------EEEEEEECCSSSCCCSEEECTTS-
T ss_pred             EEEEe--cCCCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCCc------cCCeEEEECCCCCCCeEEECCCC-
Confidence            44322  445678899999876 45555443      7899999875410      00000111123456788999988 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          418 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      ++. +++.+ .|.+|+.. ++.  +..+..+. .+.+++|+|++.. |..++.++ |..++
T Consensus       251 ~lw-v~~~~-gv~~~~~~-g~~--~~~~~~~~-~~~~~~f~~d~~~-L~it~~~~-l~~~~  303 (305)
T 3dr2_A          251 WLW-SSSGT-GVCVFDSD-GQL--LGHIPTPG-TASNCTFDQAQQR-LFITGGPC-LWMLP  303 (305)
T ss_dssp             CEE-ECCSS-EEEEECTT-SCE--EEEEECSS-CCCEEEECTTSCE-EEEEETTE-EEEEE
T ss_pred             CEE-EecCC-cEEEECCC-CCE--EEEEECCC-ceeEEEEeCCCCE-EEEEcCCe-EEEEE
Confidence            544 44444 49999985 442  33333333 4888999999886 44445543 44333

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.06  E-value=3.9e-08  Score=96.47  Aligned_cols=242  Identities=10%  Similarity=0.070  Sum_probs=149.8

Q ss_pred             cccccCCCceEEEEEecCC-----cceeEEEEEecCCCCCCceeeeeccccC--------CCcceeeeecCCCCCCCCCC
Q 010769          144 DMTINPNDAVIVCARNEDD-----VSHLEVYILEESDGGDPNLYVHHHIIIP--------AFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~~~-----~~~l~v~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~w~~~~~~~s~~~~  210 (502)
                      .+.++|+++.|.++.....     ...=.|.+++....   .  ....+.++        ..|..+.+       +|+|+
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~---~--vv~~I~v~g~~r~~~g~~P~~~~~-------spDGk  189 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF---L--PIADIELPDAPRFLVGTYQWMNAL-------TPDNK  189 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---C--EEEEEEETTCCCCCBSCCGGGSEE-------CTTSS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC---c--EEEEEECCCccccccCCCcceEEE-------cCCCC
Confidence            6899999999988864100     00116777776654   2  22223332        23444433       89999


Q ss_pred             EEEEecC--CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          211 FMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       211 ~la~g~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      +|.++..  ++.|.+.|+.+...+..+.                         . +.     +....|.+...+++.+.|
T Consensus       190 ~lyV~n~~~~~~VsVID~~t~kvv~~I~-------------------------v-~g-----~~~~~p~g~~~~v~~~~d  238 (426)
T 3c75_H          190 NLLFYQFSPAPAVGVVDLEGKTFDRMLD-------------------------V-PD-----CYHIFPASPTVFYMNCRD  238 (426)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEE-------------------------C-CS-----EEEEEEEETTEEEEEETT
T ss_pred             EEEEEecCCCCeEEEEECCCCeEEEEEE-------------------------c-CC-----ceeeccCCCcEEEEEcCC
Confidence            9999874  5789999997643222111                         0 11     123445545677778888


Q ss_pred             CcEEEEECCCCeeeEE----eccCCCCe-EEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEe-----------e
Q 010769          289 KQVKIWDVAAGKCNLT----LEHHTDKV-QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWA-----------V  351 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~----~~~h~~~v-~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~-----------~  351 (502)
                      |++.+.++.+++....    +.....++ ..+.|.+++ ..++..+..+.|.+.|+....... ..+.           .
T Consensus       239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~  317 (426)
T 3c75_H          239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR  317 (426)
T ss_dssp             SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred             CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence            9988888866665432    22112221 235678888 445555678899999986543211 0111           1


Q ss_pred             cCCeEEEEeCCCCCCEEEEEe---------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE
Q 010769          352 AADVESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       352 ~~~v~~v~~~p~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      ......++++|++..++++..         ..+.|.++|+.+.         +.+.++.... ...++.|+|++..++++
T Consensus       318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---------kvv~~I~vg~-~P~gia~spDg~~~lyv  387 (426)
T 3c75_H          318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---------ERINKIELGH-EIDSINVSQDAEPLLYA  387 (426)
T ss_dssp             ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEEEE-EECEEEECCSSSCEEEE
T ss_pred             cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---------eEEEEEECCC-CcCeEEEccCCCEEEEE
Confidence            222334688998775555433         1357999999987         6666665332 47899999998427777


Q ss_pred             Ee-CCCcEEEEECCCCCe
Q 010769          423 GS-TDKMVKLWDLSNNQP  439 (502)
Q Consensus       423 ~s-~dg~i~vwd~~~~~~  439 (502)
                      +. .++.|.++|+.+.+.
T Consensus       388 ~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          388 LSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             EETTTTEEEEEETTTCCE
T ss_pred             EcCCCCeEEEEECCCCCE
Confidence            76 599999999999984

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.03  E-value=1.9e-07  Score=90.62  Aligned_cols=232  Identities=18%  Similarity=0.109  Sum_probs=138.9

Q ss_pred             CCCCEEEE-ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccc--cccccCCcccceeeEEecCCCCcEEE
Q 010769          207 EKGNFMAV-GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSS--IKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       207 ~~~~~la~-g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      +++++|++ |..++.|.|+|+.+.... |...                +...  ....-.+ ...-..+...|++  +++
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~-p~~~----------------k~ie~~~~~~~~g-~s~Ph~~~~~pdG--i~V  152 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPRE-PKII----------------KVIEPEEVKKVSG-YSRLHTVHCGPDA--IYI  152 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTS-CEEE----------------EEECHHHHHHHHC-EEEEEEEEECSSC--EEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCC-ceee----------------eeechhhcccccC-CCcccceeECCCe--EEE
Confidence            67776655 667789999998642211 1100                0000  0000001 1134566778984  676


Q ss_pred             EEecC------CcEEEEECCCCeeeEEeccCCC---CeEEEEEcCCCCcEEEEEE-------------------CCCcEE
Q 010769          284 SASAD------KQVKIWDVAAGKCNLTLEHHTD---KVQAVAWNHHSPQILLSGS-------------------FDRSVV  335 (502)
Q Consensus       284 sgs~D------g~v~vwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~-------------------~dg~i~  335 (502)
                      ++..+      |.|.++|..+.+.+.++.....   .-..+.|+|++ +.+++..                   ...+|.
T Consensus       153 s~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~  231 (462)
T 2ece_A          153 SALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIH  231 (462)
T ss_dssp             EEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEE
T ss_pred             EcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEE
Confidence            76665      7899999999999998863222   23457889999 7777774                   378999


Q ss_pred             EEeCCCCCCccceEeec---CCeEEEEe--CCCCCCEEEEEe-----CCCeEEEEECCCCCCCCCCCCCCccEE--Eec-
Q 010769          336 MKDARISTHSGFKWAVA---ADVESLAW--DPHAEHSFVVSL-----EDGTIKGFDIRTAKSDPDSTSQQSSFT--LHA-  402 (502)
Q Consensus       336 vwd~~~~~~~~~~~~~~---~~v~~v~~--~p~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~-  402 (502)
                      +||+.+.+... .....   .....+.|  +|++...++++-     .+++|.+|....+.       ......  +.. 
T Consensus       232 v~D~~~~k~~~-tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-------~~~~~vIdi~~~  303 (462)
T 2ece_A          232 FWDLRKRKRIH-SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-------WNAEKVIEIPAE  303 (462)
T ss_dssp             EEETTTTEEEE-EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-------EEEEEEEEECCE
T ss_pred             EEECCCCcEee-EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-------eeEEEEEeCCCc
Confidence            99999764433 23332   23445545  998875555555     67788776554321       011111  000 


Q ss_pred             ---------------CCCCeeEEEEcCCCCCEEEE-EeCCCcEEEEECCC-CCeeEEEEecCC--------------CCC
Q 010769          403 ---------------HDKAVCTISYNPLVPNLLAT-GSTDKMVKLWDLSN-NQPSCIASRNPK--------------AGA  451 (502)
Q Consensus       403 ---------------h~~~v~~l~~sp~~~~~l~t-~s~dg~i~vwd~~~-~~~~~~~~~~~~--------------~~~  451 (502)
                                     -......|.++|++ ++|++ .-..+.|.+||+.. .++..+......              .+.
T Consensus       304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg  382 (462)
T 2ece_A          304 PLEGNLPEILKPFKAVPPLVTDIDISLDD-KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA  382 (462)
T ss_dssp             ECCSSCCGGGGGGTEECCCCCCEEECTTS-CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred             cccccccccccccccCCCceeEEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence                           02457889999999 55554 44578999999863 333344333221              013


Q ss_pred             EEEEEEcCCCCcEEEEE
Q 010769          452 VFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       452 v~~~~~spd~~~llasg  468 (502)
                      -..++++|||++++++.
T Consensus       383 Pr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          383 PQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCEEECTTSSEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEc
Confidence            57799999999766554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.02  E-value=3.8e-08  Score=93.00  Aligned_cols=225  Identities=13%  Similarity=-0.000  Sum_probs=136.3

Q ss_pred             ccccccccCCCce-EEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769          141 DLEDMTINPNDAV-IVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP  219 (502)
Q Consensus       141 ~v~~~~~~p~~~~-l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg  219 (502)
                      ..+...|+|+++. ++++...+     .|+.|+.. +   .+....  .....+..+.+       +++|+++++....+
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~-----~i~~~~~~-g---~~~~~~--~~~~~~~gl~~-------d~dG~l~v~~~~~~  107 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGR-----RVLGWRED-G---TVDVLL--DATAFTNGNAV-------DAQQRLVHCEHGRR  107 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTT-----EEEEEETT-S---CEEEEE--ESCSCEEEEEE-------CTTSCEEEEETTTT
T ss_pred             CccCCeEeCCCCEEEEEECCCC-----EEEEEeCC-C---CEEEEe--CCCCccceeeE-------CCCCCEEEEECCCC
Confidence            4567899999984 45544444     67777653 2   222111  12334556665       78899777766668


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCC-cccceeeEEecCCCCcEEEE----Eec-------
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNILAS----ASA-------  287 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s----gs~-------  287 (502)
                      .|.+|+.+ +. ..   .+..                    ...+ ....+.++++.+++ .++++    |..       
T Consensus       108 ~v~~~~~~-g~-~~---~~~~--------------------~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~  161 (305)
T 3dr2_A          108 AITRSDAD-GQ-AH---LLVG--------------------RYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCP  161 (305)
T ss_dssp             EEEEECTT-SC-EE---EEEC--------------------EETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCC
T ss_pred             EEEEECCC-CC-EE---EEEe--------------------ccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccc
Confidence            89999875 21 11   1100                    0001 12457789999995 46665    332       


Q ss_pred             ------CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC------CcEEEEeCCCCCCccc-eE--eec
Q 010769          288 ------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSGF-KW--AVA  352 (502)
Q Consensus       288 ------Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~-~~--~~~  352 (502)
                            .+.|..||..+++.....  .......++|+|++ +.|+.+...      +.|.+|++........ .+  ...
T Consensus       162 ~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~  238 (305)
T 3dr2_A          162 ADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD  238 (305)
T ss_dssp             CCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS
T ss_pred             cccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC
Confidence                  256778887666654433  34567889999999 656665554      7899999875431110 01  012


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      .....+++++++.  +++++.+ .|.+|+...          ..+..+..+. .+.+++|+|++ +.|..++.++
T Consensus       239 ~~pdgi~~d~~G~--lwv~~~~-gv~~~~~~g----------~~~~~~~~~~-~~~~~~f~~d~-~~L~it~~~~  298 (305)
T 3dr2_A          239 GLPDGFCVDRGGW--LWSSSGT-GVCVFDSDG----------QLLGHIPTPG-TASNCTFDQAQ-QRLFITGGPC  298 (305)
T ss_dssp             SCCCSEEECTTSC--EEECCSS-EEEEECTTS----------CEEEEEECSS-CCCEEEECTTS-CEEEEEETTE
T ss_pred             CCCCeEEECCCCC--EEEecCC-cEEEECCCC----------CEEEEEECCC-ceeEEEEeCCC-CEEEEEcCCe
Confidence            3455788898775  5555544 599998742          4555555444 58899999887 6666666554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.00  E-value=6e-11  Score=115.61  Aligned_cols=184  Identities=16%  Similarity=0.111  Sum_probs=103.6

Q ss_pred             CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee--cCCeE
Q 010769          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV--AADVE  356 (502)
Q Consensus       279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~  356 (502)
                      +..|++++.||.|+.||..+|+.+.++..  ..+.+..+..++ .++++++.||.|+.||..+++... .+..  ...+.
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w-~~~~~~~~~~~   84 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLT-KLPFTIPELVQ   84 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSE-ECSCCHHHHHT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceee-eeeccCccccc
Confidence            34899999999999999999999988875  455555555666 677778899999999998776532 1111  11110


Q ss_pred             -EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010769          357 -SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       357 -~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                       +..+. .+ ..+++++.++.|+.||.+++         +.++.+..+.    ...++|.+ ..+++++.++.|+.||..
T Consensus        85 ~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG---------~~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~  148 (369)
T 2hz6_A           85 ASPCRS-SD-GILYMGKKQDIWYVIDLLTG---------EKQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTK  148 (369)
T ss_dssp             TCSCC-------CCCCEEEEEEEEECCC------------------------------------EEEEEEEEEEECCCSS
T ss_pred             cCceEe-cC-CEEEEEeCCCEEEEEECCCC---------cEEEEecCCC----cccccccC-CEEEEEecCCEEEEEECC
Confidence             00111 22 35778888999999999987         5556555443    23456665 788889999999999999


Q ss_pred             CCCeeEEEEecCCCCCEEEEEEcCCC---CcEEEEEeCCCcEEEEECCCCccccc
Q 010769          436 NNQPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       436 ~~~~~~~~~~~~~~~~v~~~~~spd~---~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      +++..-......    .....++++.   . .+++++.+|.|+.||..+++.+.+
T Consensus       149 tG~~~W~~~~~~----~~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~~W~  198 (369)
T 2hz6_A          149 TRELRWNATYFD----YAASLPEDDVDYKM-SHFVSNGDGLVVTVDSESGDVLWI  198 (369)
T ss_dssp             SSSCCCEEEEEE----ECCBCCCCCTTCCC-CEEEEETSCEEEEECTTTCCEEEE
T ss_pred             CCCEEEeEeccc----ccCccccCCccccc-eEEEECCCCEEEEEECCCCcEEEE
Confidence            887432222211    1223334432   3 366688899999999999987643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.98  E-value=1.5e-08  Score=101.87  Aligned_cols=247  Identities=10%  Similarity=0.085  Sum_probs=158.7

Q ss_pred             CCCCEEEEecC-CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEe-c-CCCCcEEE
Q 010769          207 EKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-N-KEFRNILA  283 (502)
Q Consensus       207 ~~~~~la~g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~-~~~~~~l~  283 (502)
                      ++|++|.+... ++.|.+.|+++..+..-+.                         + .....+..+++ . |+++ +++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~-------------------------i-p~g~~phg~~~~~~p~~~-~v~  151 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILE-------------------------I-PNAKGIHGLRPQKWPRSN-YVF  151 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEE-------------------------C-SSCCSEEEEEECCSSBCS-EEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEe-------------------------C-CCCCCCcceeeeecCCCc-EEE
Confidence            47888777655 4679999998754332111                         0 11234667887 4 7855 555


Q ss_pred             EEe------------------cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC-------------
Q 010769          284 SAS------------------ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-------------  332 (502)
Q Consensus       284 sgs------------------~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-------------  332 (502)
                      +++                  .++.+.+.|..+.+.+.++.--. ....++++|+| .++++.+.+.             
T Consensus       152 ~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~  229 (595)
T 1fwx_A          152 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAE  229 (595)
T ss_dssp             EEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCS
T ss_pred             EecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCC-CEEEEEecCcccCcchhhccccc
Confidence            553                  35689999999999888876322 45667899998 6666666443             


Q ss_pred             -------------------------cEEEEeCCC--CCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCC
Q 010769          333 -------------------------SVVMKDARI--STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       333 -------------------------~i~vwd~~~--~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~  385 (502)
                                               .|.+.|.++  .+.............++.++|+|..+++++..+..|.++|+.+.
T Consensus       230 ~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          230 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             cceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence                                     477778776  33323345566778899999999977777888999999999854


Q ss_pred             CCC--CCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC--------CeeEEEEecCCCCCE---
Q 010769          386 KSD--PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--------QPSCIASRNPKAGAV---  452 (502)
Q Consensus       386 ~~~--~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~v---  452 (502)
                      ...  ........+.....-......++|+|+| ...++.-.|++|.+||+...        ....+..+..|-.+-   
T Consensus       310 ~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~  388 (595)
T 1fwx_A          310 DAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK  388 (595)
T ss_dssp             HHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred             ccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence            100  0000001122222233457889999998 77777888999999998761        112445555554322   


Q ss_pred             --EEEEEcCCCCcEEEEEeCC-CcE-----------EEEECCCCc
Q 010769          453 --FSVAFSEDSPFVLAIGGSK-GKL-----------EIWDTLSDA  483 (502)
Q Consensus       453 --~~~~~spd~~~llasg~~d-g~i-----------~vwd~~~~~  483 (502)
                        ..+.++|||+||+++.... .++           .++|+++++
T Consensus       389 ~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          389 TVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             ETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             eccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence              1234589999866655433 345           899996555

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.97  E-value=2.3e-10  Score=111.52  Aligned_cols=204  Identities=13%  Similarity=0.055  Sum_probs=109.7

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      ++..|++|+.+|.|+.||..+++.+...                           ..  ..+.+..+..+ +.++++++.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~---------------------------~~--~~~~s~p~~~~-g~~~v~~s~   57 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTL---------------------------KE--DPVLQVPTHVE-EPAFLPDPN   57 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEE---------------------------EC--CCSCCCC------CCEEECTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEe---------------------------cC--CCceecceEcC-CCEEEEeCC
Confidence            5889999999999999999765443221                           11  23444444555 447777889


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCC-eE-EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDK-VQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~-v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~  365 (502)
                      ||.|+.||..+|+.+..+..+... +. +..+. .+ ..+++++.++.|+.||.++++........ .   ...++|.+.
T Consensus        58 dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-~---~~~~~p~~~  131 (369)
T 2hz6_A           58 DGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSA-F---ADSLSPSTS  131 (369)
T ss_dssp             TCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------
T ss_pred             CCEEEEEECCCCceeeeeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCC-C---cccccccCC
Confidence            999999999999877666533211 10 00111 23 46778888999999999988764322221 1   234566544


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC--CCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PNLLATGSTDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--~~~l~t~s~dg~i~vwd~~~~~~~~~~  443 (502)
                       .+++++.++.|+.||.+++         +.++.+..+.  .....+.++.  ...+++++.+|.|+.||..+++.  +.
T Consensus       132 -~v~~~~~dg~v~a~d~~tG---------~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~--~W  197 (369)
T 2hz6_A          132 -LLYLGRTEYTITMYDTKTR---------ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV--LW  197 (369)
T ss_dssp             --EEEEEEEEEEECCCSSSS---------SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE--EE
T ss_pred             -EEEEEecCCEEEEEECCCC---------CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE--EE
Confidence             7888888999999999987         4455543221  1222333321  14567788999999999999883  44


Q ss_pred             EecCCCCCEE-EEEEcCCCC
Q 010769          444 SRNPKAGAVF-SVAFSEDSP  462 (502)
Q Consensus       444 ~~~~~~~~v~-~~~~spd~~  462 (502)
                      .... .+++. ...+++++.
T Consensus       198 ~~~~-~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          198 IQNY-ASPVVAFYVWQREGL  216 (369)
T ss_dssp             EEEC-SSCEEEEEECTTSSC
T ss_pred             EecC-CCceEEEEEecCCce
Confidence            4432 23443 344556653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.95  E-value=8.4e-08  Score=100.84  Aligned_cols=242  Identities=11%  Similarity=0.078  Sum_probs=148.1

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee-EEecCCCCcEEEEEe
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~l~sgs  286 (502)
                      .+..|++++.++.|..+|..+++.+......               ...       .....+.+ .... + + .++.++
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~---------------~~~-------~~~~~~~~~p~v~-~-~-~v~v~~  181 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTF---------------EGQ-------KGSLTITGAPRVF-K-G-KVIIGN  181 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETT---------------TTC-------CSSCBCCSCCEEE-T-T-EEEECC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCC---------------cCc-------CcCcccccCcEEE-C-C-EEEEEe
Confidence            4678888899999999999876544322110               000       00001111 1111 2 3 455554


Q ss_pred             c------CCcEEEEECCCCeeeEEeccCCCC--------------------------------eEEEEEcCCCCcEEEEE
Q 010769          287 A------DKQVKIWDVAAGKCNLTLEHHTDK--------------------------------VQAVAWNHHSPQILLSG  328 (502)
Q Consensus       287 ~------Dg~v~vwd~~~~~~~~~~~~h~~~--------------------------------v~~l~~~~~~~~~l~s~  328 (502)
                      .      ++.|+.||..+|+.+.++......                                ...++++|.+ .+++.+
T Consensus       182 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~  260 (677)
T 1kb0_A          182 GGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVG  260 (677)
T ss_dssp             BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEE
T ss_pred             cccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEE
Confidence            3      799999999999988777532211                                1356788887 677777


Q ss_pred             ECCC-------------------cEEEEeCCCCCCccceEee---------cCCeEEEEeCCCCC--CEEEEEeCCCeEE
Q 010769          329 SFDR-------------------SVVMKDARISTHSGFKWAV---------AADVESLAWDPHAE--HSFVVSLEDGTIK  378 (502)
Q Consensus       329 ~~dg-------------------~i~vwd~~~~~~~~~~~~~---------~~~v~~v~~~p~~~--~~l~~~~~dg~i~  378 (502)
                      +.++                   .|..+|.++++..-.....         ......+....++.  ..+++++.+|.|+
T Consensus       261 ~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~  340 (677)
T 1kb0_A          261 TGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFF  340 (677)
T ss_dssp             CCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred             CCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEE
Confidence            6654                   4999999887754322111         11122222222342  4788899999999


Q ss_pred             EEECCCCCCCCCCCCCCccEEEecCC-----------CCe------------------------eEEEEcCCCCCEEEEE
Q 010769          379 GFDIRTAKSDPDSTSQQSSFTLHAHD-----------KAV------------------------CTISYNPLVPNLLATG  423 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~h~-----------~~v------------------------~~l~~sp~~~~~l~t~  423 (502)
                      ++|..++         +.++......           .++                        ..++|+|+. .++++.
T Consensus       341 ~lD~~tG---------~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~  410 (677)
T 1kb0_A          341 VLDRTNG---------KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLP  410 (677)
T ss_dssp             EEETTTC---------CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEE
T ss_pred             EEECCCC---------CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEe
Confidence            9999987         3443332111           000                        257888887 666664


Q ss_pred             eC-------------------------------------------CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          424 ST-------------------------------------------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       424 s~-------------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ..                                           .|.|..||+.+++.  +.... +..++....+...
T Consensus       411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~-~~~~~~~g~~~~~  487 (677)
T 1kb0_A          411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA--AWSVE-HVSPWNGGTLTTA  487 (677)
T ss_dssp             EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE--EEEEE-ESSSCCCCEEEET
T ss_pred             ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE--EeecC-CCCCCcCcceEeC
Confidence            32                                           27799999999884  33332 2233444456666


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          461 SPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       461 ~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +. ++++++.+|.+++||+.+++.+.+..
T Consensus       488 g~-~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          488 GN-VVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             TT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CC-EEEEECCCCcEEEEECCCCceeeeee
Confidence            66 57778999999999999999987654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.94  E-value=6e-08  Score=102.17  Aligned_cols=243  Identities=12%  Similarity=0.048  Sum_probs=144.4

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe-
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-  286 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs-  286 (502)
                      .+..|++++.++.|..+|..+++.+.......               ...  ........++    +. + + .++.++ 
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~---------------~~~--~~~~~~~sP~----v~-~-g-~v~vg~~  175 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA---------------DHK--RSYTITGAPR----VV-N-G-KVVIGNG  175 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCS---------------CTT--SCCBCCSCCE----EE-T-T-EEEECCB
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcC---------------CCC--CCccccCCcE----EE-C-C-EEEEEeC
Confidence            46788889999999999998766543221100               000  0000011111    11 2 3 444443 


Q ss_pred             -----cCCcEEEEECCCCeeeEEeccCC-------------------------------CCeEEEEEcCCCCcEEEEEEC
Q 010769          287 -----ADKQVKIWDVAAGKCNLTLEHHT-------------------------------DKVQAVAWNHHSPQILLSGSF  330 (502)
Q Consensus       287 -----~Dg~v~vwd~~~~~~~~~~~~h~-------------------------------~~v~~l~~~~~~~~~l~s~~~  330 (502)
                           .+|.|..||..+|+.+..+....                               .....+++.|.. .+++.++.
T Consensus       176 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~  254 (689)
T 1yiq_A          176 GAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVG  254 (689)
T ss_dssp             CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECC
T ss_pred             CCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCC
Confidence                 37899999999999887764210                               011256788877 67888877


Q ss_pred             CCc-------------------EEEEeCCCCCCccceEee---------cCCeEEEEeCCCCC--CEEEEEeCCCeEEEE
Q 010769          331 DRS-------------------VVMKDARISTHSGFKWAV---------AADVESLAWDPHAE--HSFVVSLEDGTIKGF  380 (502)
Q Consensus       331 dg~-------------------i~vwd~~~~~~~~~~~~~---------~~~v~~v~~~p~~~--~~l~~~~~dg~i~i~  380 (502)
                      ++.                   |..+|.++++..-.....         ...+.......++.  ..++.++.+|.++++
T Consensus       255 ~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~l  334 (689)
T 1yiq_A          255 NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVI  334 (689)
T ss_dssp             CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEE
Confidence            763                   999999988754322211         11111111111221  268888999999999


Q ss_pred             ECCCCCCCCCCCCCCccEEEecC----------------------------C-----------CCeeEEEEcCCCCCEEE
Q 010769          381 DIRTAKSDPDSTSQQSSFTLHAH----------------------------D-----------KAVCTISYNPLVPNLLA  421 (502)
Q Consensus       381 d~~~~~~~~~~~~~~~~~~~~~h----------------------------~-----------~~v~~l~~sp~~~~~l~  421 (502)
                      |.++++.         ++.....                            .           ..-..++|+|.. .+++
T Consensus       335 D~~tG~~---------l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~y  404 (689)
T 1yiq_A          335 DRATGEL---------LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVY  404 (689)
T ss_dssp             ETTTCCE---------EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEE
T ss_pred             ECCCCCE---------eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEE
Confidence            9998732         2111100                            0           011237888876 5666


Q ss_pred             EEeC---------------------------------------------CCcEEEEECCCCCeeEEEEecCCCCCEEEEE
Q 010769          422 TGST---------------------------------------------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       422 t~s~---------------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      +.+.                                             +|.|+.||+.+++.  +.....+ .++....
T Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~~-~~~~~g~  481 (689)
T 1yiq_A          405 IPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA--AWEVPYV-TIFNGGT  481 (689)
T ss_dssp             EEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE--EEEEEES-SSCCCCE
T ss_pred             EeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe--EeEccCC-CCccCcc
Confidence            5422                                             37799999999984  3333322 2233334


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          457 FSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       457 ~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +...+. ++++|+.||.|+.||..+++.+.+.-
T Consensus       482 ~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          482 LSTAGN-LVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             EEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceECCC-EEEEECCCCcEEEEECCCCccceeee
Confidence            555566 68889999999999999999886543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.93  E-value=1.5e-06  Score=80.08  Aligned_cols=216  Identities=10%  Similarity=0.023  Sum_probs=131.4

Q ss_pred             CCC-CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          206 REK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +++ +.++++-...+.|.+++++....   ..                        ..........+|++.+.++.++++
T Consensus        44 d~~~~~ly~~d~~~~~I~~~~~~g~~~---~~------------------------~~~~~~~~p~~ia~d~~~~~lyv~   96 (267)
T 1npe_A           44 DCVDKVVYWTDISEPSIGRASLHGGEP---TT------------------------IIRQDLGSPEGIALDHLGRTIFWT   96 (267)
T ss_dssp             ETTTTEEEEEETTTTEEEEEESSSCCC---EE------------------------EECTTCCCEEEEEEETTTTEEEEE
T ss_pred             ecCCCEEEEEECCCCEEEEEecCCCCc---EE------------------------EEECCCCCccEEEEEecCCeEEEE
Confidence            554 45555656678999999864211   00                        001112457899999875666666


Q ss_pred             EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC--CCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769          285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF--DRSVVMKDARISTHSGFKWAVAADVESLAWDP  362 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p  362 (502)
                      -...+.|.++++........+.........++++|++..++++...  .+.|..+++..................++++|
T Consensus        97 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~  176 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA  176 (267)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred             ECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcC
Confidence            6777899999987543222222222567899999976355555443  46888888764332211111124578899999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                      ++..++++-...+.|..++....         ....... .......+++.  +..++++....+.|.++|..+++.  +
T Consensus       177 ~~~~lyv~d~~~~~I~~~~~~g~---------~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~--~  242 (267)
T 1npe_A          177 FSSQLCWVDAGTHRAECLNPAQP---------GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE--M  242 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEE---------EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE--E
T ss_pred             CCCEEEEEECCCCEEEEEecCCC---------ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc--e
Confidence            87766677777889999998753         2112222 22334566654  335666665678999999988873  3


Q ss_pred             EEecCCC-CCEEEEEEcCCCC
Q 010769          443 ASRNPKA-GAVFSVAFSEDSP  462 (502)
Q Consensus       443 ~~~~~~~-~~v~~~~~spd~~  462 (502)
                      ..+.... .....+++.|++.
T Consensus       243 ~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          243 DTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEECCSSCCCCCCEEEECSCC
T ss_pred             EEEccccccccceeeecCccC
Confidence            3333222 2356777877764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.90  E-value=7.3e-08  Score=92.91  Aligned_cols=251  Identities=10%  Similarity=-0.020  Sum_probs=150.0

Q ss_pred             cccccCCCceEEEEEecC-----CcceeEEEEEecCCCCCCceeeeeccccC--------CCcceeeeecCCCCCCCCCC
Q 010769          144 DMTINPNDAVIVCARNED-----DVSHLEVYILEESDGGDPNLYVHHHIIIP--------AFPLCMAWLDCPLKDREKGN  210 (502)
Q Consensus       144 ~~~~~p~~~~l~~~~~~~-----~~~~l~v~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~w~~~~~~~s~~~~  210 (502)
                      .+.++|+++.|.++....     ....=.|.+++....   .  ....+.++        ..|..+..       +|+|+
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~---~--vv~~I~v~~~~~~~~g~~P~~ia~-------SpDGk  136 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---L--PIADIELPDAPRFSVGPRVHIIGN-------CASSA  136 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC---C--EEEEEEETTSCSCCBSCCTTSEEE-------CTTSS
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC---C--EEEEEECCCccccccCCCcceEEE-------cCCCC
Confidence            689999999998886310     000116777776654   2  22333333        23555544       89999


Q ss_pred             EEEEecC--CCcEEE--eeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          211 FMAVGSM--EPAIEI--WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       211 ~la~g~~--dg~I~i--wdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      +|+++..  ...|.+  +|+.+   +..+                         .. +.     |+.+.|++...+++.+
T Consensus       137 ~lyVan~~~~~~v~V~~iD~~t---v~~i-------------------------~v-~~-----~~~~~p~g~~~~~~~~  182 (368)
T 1mda_H          137 CLLFFLFGSSAAAGLSVPGASD---DQLT-------------------------KS-AS-----CFHIHPGAAATHYLGS  182 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTEE---EEEE-------------------------EC-SS-----CCCCEEEETTEEECCC
T ss_pred             EEEEEccCCCCeEEEEEEchhh---ceEE-------------------------EC-CC-----ceEEccCCCeEEEEEc
Confidence            9999875  357888  88853   1100                         00 11     1223456566777778


Q ss_pred             cCCcEEEEECCC-----CeeeEE----eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEe------
Q 010769          287 ADKQVKIWDVAA-----GKCNLT----LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWA------  350 (502)
Q Consensus       287 ~Dg~v~vwd~~~-----~~~~~~----~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~------  350 (502)
                      .||.+.+.++.+     ++.+..    +.....+.   . .+++ ..++..+. +.|.+.|+....... ..+.      
T Consensus       183 ~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~  256 (368)
T 1mda_H          183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             CCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccc
Confidence            899998899886     443321    11122333   3 5555 34444455 999999986532110 0110      


Q ss_pred             -----ecCCeEEEEeCCCCCCEEEEEe---C-----CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769          351 -----VAADVESLAWDPHAEHSFVVSL---E-----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       351 -----~~~~v~~v~~~p~~~~~l~~~~---~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                           .......++++|++..++++..   .     .+.+.++|+.+.         +.+..+.... ...+++|+|++.
T Consensus       257 ~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---------~vv~~i~vg~-~p~gi~~s~Dg~  326 (368)
T 1mda_H          257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---------QTSGPISNGH-DSDAIIAAQDGA  326 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---------CEEECCEEEE-EECEEEECCSSS
T ss_pred             cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---------eEEEEEECCC-CcceEEECCCCC
Confidence                 1122233689998875554443   2     235669999987         4555554333 588999999986


Q ss_pred             CEEEEEe-CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcC
Q 010769          418 NLLATGS-TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE  459 (502)
Q Consensus       418 ~~l~t~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp  459 (502)
                      .++++.. .++.|.++|+.+.+  .+..+... .....+++.+
T Consensus       327 ~l~va~~~~~~~VsVID~~t~k--vv~~I~vg-~~P~~i~~~~  366 (368)
T 1mda_H          327 SDNYANSAGTEVLDIYDAASDQ--DQSSVELD-KGPESLSVQN  366 (368)
T ss_dssp             CEEEEEETTTTEEEEEESSSCE--EEEECCCC-SCCCEEECCC
T ss_pred             EEEEEccCCCCeEEEEECCCCc--EEEEEECC-CCCCEEEeec
Confidence            6788888 69999999999987  44455433 3344555544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.90  E-value=1.1e-07  Score=95.47  Aligned_cols=255  Identities=12%  Similarity=0.132  Sum_probs=160.8

Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchh------hhhhccccC----------Cccc-cccccCCcccceeeEEe
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKKKSKKG----------KKSS-IKYKKGSHTDSVLGLAW  274 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~~~~~~----------~~~~-~~~~~~~h~~~V~~l~~  274 (502)
                      |.+|+..|.++|+-+.++..+..+.++......      ..++.....          .... ....-..|-   ..+++
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh---~~~s~   94 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH---VHMSF   94 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCC---EEEEE
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCc---cccCC
Confidence            678899999999999998887776666543322      111111100          0000 000111121   33344


Q ss_pred             ---cCCCCcEEEEEecCCcEEEEECCCCeeeEEecc-CCCCeEEEEE-c-CCCCcEEEEEE------------------C
Q 010769          275 ---NKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAW-N-HHSPQILLSGS------------------F  330 (502)
Q Consensus       275 ---~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~~-~-~~~~~~l~s~~------------------~  330 (502)
                         .++|+.++++...++.|.+.|+.+.++...+.- ....+..+++ + |++ .++++++                  .
T Consensus        95 t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A           95 TEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCccccccccc
Confidence               236565666666677899999999998885532 2345788887 4 888 5666663                  3


Q ss_pred             CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC------------------------------------
Q 010769          331 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED------------------------------------  374 (502)
Q Consensus       331 dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d------------------------------------  374 (502)
                      ++.+.+.|..+.+... .....+....++++|++...++++...                                    
T Consensus       174 ~~~vtvID~~t~~v~~-qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAW-QVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEETTTTEEEE-EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CceEEEEECCCCeEEE-EEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            4578999998755433 334444667788999887544444332                                    


Q ss_pred             -CeEEEEECCCCCCCCCCCCCCc-cEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----------eEE
Q 010769          375 -GTIKGFDIRTAKSDPDSTSQQS-SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------SCI  442 (502)
Q Consensus       375 -g~i~i~d~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----------~~~  442 (502)
                       +.|.+.|.++..       ... +..+.. .....++.++|+|..+++++..+.+|.++|+.+.+.          ..+
T Consensus       253 i~~V~VID~~~~~-------~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~  324 (595)
T 1fwx_A          253 LNGVKVVDGRKEA-------SSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  324 (595)
T ss_dssp             ETTEEEEECSGGG-------CCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred             ECcEEEEeCcccC-------CceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence             136666666520       022 334433 245688999999955666667789999999986421          123


Q ss_pred             EEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ..... ......++|+|+| +++++...++.|.+||+.+
T Consensus       325 ~~v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          325 AEPEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ECCBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             EEcCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            33332 3457889999999 6888888999999999977

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.89  E-value=4.1e-06  Score=79.31  Aligned_cols=211  Identities=12%  Similarity=0.078  Sum_probs=136.3

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCC----CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAA----GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  342 (502)
                      ..+.+++|.+.++.++++-...+.|..+++..    ......+...-.....+++.+.+.+++++-...+.|.++++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            45789999987565666667778999999876    22222233223456788888765466677677889999998754


Q ss_pred             CCccceEeecCCeEEEEeCCCCCCEEEEEeCC-CeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEE
Q 010769          343 THSGFKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       343 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ...............++++|.+..++++.... +.|..+++...          ....+ ...-.....++++|.+..++
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~----------~~~~~~~~~~~~P~gla~d~~~~~lY  179 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----------DIYSLVTENIQWPNGITLDLLSGRLY  179 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----------CEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC----------CeEEEEECCCCCceEEEEeccCCEEE
Confidence            33221222235678999998766555555443 78888887532          22222 22335678999998774666


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      ++-+..+.|..+++.......+............+++.. + +++.+-...+.|..++..+++.+..+.
T Consensus       180 ~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            666677899999998654333333322334567888853 3 467777778899999987777655443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.87  E-value=1.2e-06  Score=85.22  Aligned_cols=223  Identities=8%  Similarity=0.056  Sum_probs=132.2

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      +..+++++.++.|..+|..++..+.....                  ............+    ... +  ..++.++.+
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~------------------~~~~~~~~~~~~~----~~~-~--~~v~~g~~~  197 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNL------------------DMPSLSLRGESAP----TTA-F--GAAVVGGDN  197 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEEC------------------CC-----CCCCCC----EEE-T--TEEEECCTT
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeC------------------CCCceeecCCCCc----EEE-C--CEEEEEcCC
Confidence            55788888899999999876544322110                  0000000111111    122 2  367788889


Q ss_pred             CcEEEEECCCCeeeEEeccCCCC----eEE---EEEcC--CCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEE
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDK----VQA---VAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA  359 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~----v~~---l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~  359 (502)
                      +.|..+|..+++.+..+......    +..   +...|  .+ ..++.++.++.+..+|.++++..- ... ......+.
T Consensus       198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~~~g~l~~~d~~tG~~~w-~~~-~~~~~~~~  274 (376)
T 3q7m_A          198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALAYNGNLTALDLRSGQIMW-KRE-LGSVNDFI  274 (376)
T ss_dssp             TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEEECTTSCEEEEETTTCCEEE-EEC-CCCEEEEE
T ss_pred             CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEecCcEEEEEECCCCcEEe-ecc-CCCCCCce
Confidence            99999999999887766432110    000   00111  12 467778889999999998876432 111 12233444


Q ss_pred             eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ..  +. .+++++.+|.|..+|..++         +.++.... ....+......  + ..|+.++.+|.|.++|..+++
T Consensus       275 ~~--~~-~l~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          275 VD--GN-RIYLVDQNDRVMALTIDGG---------VTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             EE--TT-EEEEEETTCCEEEEETTTC---------CEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCC
T ss_pred             EE--CC-EEEEEcCCCeEEEEECCCC---------cEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCCCc
Confidence            43  23 6888888999999999987         55665552 22233333333  2 678888999999999999998


Q ss_pred             eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          439 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       439 ~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      ..  .........+.+.....++  .|..++.+|.|+.|+
T Consensus       340 ~~--~~~~~~~~~~~~~~~~~~~--~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          340 FV--AQQKVDSSGFQTEPVAADG--KLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EE--EEEECCTTCBCSCCEEETT--EEEEEBTTSCEEEEE
T ss_pred             EE--EEEecCCCcceeCCEEECC--EEEEEeCCCEEEEEe
Confidence            43  3333222222221111244  366788999999987

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.86  E-value=6.5e-07  Score=94.24  Aligned_cols=184  Identities=13%  Similarity=0.188  Sum_probs=118.2

Q ss_pred             eeEEecCCCCcEEEEEecCCc-------------------EEEEECCCCeeeEEecc--CC-------CCeEEEEEcCCC
Q 010769          270 LGLAWNKEFRNILASASADKQ-------------------VKIWDVAAGKCNLTLEH--HT-------DKVQAVAWNHHS  321 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~Dg~-------------------v~vwd~~~~~~~~~~~~--h~-------~~v~~l~~~~~~  321 (502)
                      ..+++.|. ..+|+.++.++.                   |..||..+|+.+..++.  |.       ..+.......++
T Consensus       238 ~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G  316 (689)
T 1yiq_A          238 DSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG  316 (689)
T ss_dssp             SCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             cceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence            46788887 458888887764                   99999999999887753  21       122222222234


Q ss_pred             C--cEEEEEECCCcEEEEeCCCCCCccce------Eeec---------------------------------CCeEEEEe
Q 010769          322 P--QILLSGSFDRSVVMKDARISTHSGFK------WAVA---------------------------------ADVESLAW  360 (502)
Q Consensus       322 ~--~~l~s~~~dg~i~vwd~~~~~~~~~~------~~~~---------------------------------~~v~~v~~  360 (502)
                      .  ..++.++.+|.++++|.++++.+...      +...                                 ..-..+++
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~  396 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY  396 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence            1  37888999999999999988764211      0000                                 00112677


Q ss_pred             CCCCCCEEEEEeC---------------------------------------------CCeEEEEECCCCCCCCCCCCCC
Q 010769          361 DPHAEHSFVVSLE---------------------------------------------DGTIKGFDIRTAKSDPDSTSQQ  395 (502)
Q Consensus       361 ~p~~~~~l~~~~~---------------------------------------------dg~i~i~d~~~~~~~~~~~~~~  395 (502)
                      +|... ++++...                                             +|.|+.||+.++         +
T Consensus       397 dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG---------~  466 (689)
T 1yiq_A          397 NPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ---------Q  466 (689)
T ss_dssp             ETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT---------E
T ss_pred             CCCCC-EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC---------C
Confidence            77655 5555421                                             377999999987         6


Q ss_pred             ccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC-CEEEEEEcCCCCcEEEEE
Q 010769          396 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG-AVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       396 ~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~v~~~~~spd~~~llasg  468 (502)
                      .+++...+.. +..-.+...+ .++++++.||.|+.||.++++.  +..+....+ ...-+.|..+|+..+++.
T Consensus       467 ~~W~~~~~~~-~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~--lw~~~~~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          467 AAWEVPYVTI-FNGGTLSTAG-NLVFEGSADGRVIAYAADTGEK--LWEQPAASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             EEEEEEESSS-CCCCEEEETT-TEEEEECTTSEEEEEETTTCCE--EEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             eEeEccCCCC-ccCccceECC-CEEEEECCCCcEEEEECCCCcc--ceeeeCCCCcccCceEEEECCEEEEEEE
Confidence            7777765543 3333455555 7899999999999999999984  444432222 223466778887445444

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.84  E-value=4.8e-07  Score=82.51  Aligned_cols=198  Identities=10%  Similarity=0.001  Sum_probs=134.8

Q ss_pred             ceeeEEecCCCCcEEEEEec--CCcEEEEECCCCeeeEEeccCC-CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          268 SVLGLAWNKEFRNILASASA--DKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~--Dg~v~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      ....|.|+++ +.++++.+.  ++.|.++|+.+++.+.++.... .....+++.  +..+.++.-.++.+.++|..+.+.
T Consensus        22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred             CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence            3579999998 444544443  5799999999999988875322 233455665  335666666789999999988766


Q ss_pred             ccceEeec-CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC--C---CCeeEEEEcCCCCC
Q 010769          345 SGFKWAVA-ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--D---KAVCTISYNPLVPN  418 (502)
Q Consensus       345 ~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h--~---~~v~~l~~sp~~~~  418 (502)
                      ... .... ..-..+  ++++..++ ++..++.|.++|..+.         +.+..+...  .   ..++.+.|. ++ .
T Consensus        99 ~~~-i~~g~~~g~gl--t~Dg~~l~-vs~gs~~l~viD~~t~---------~v~~~I~Vg~~~~p~~~~nele~~-dg-~  163 (266)
T 2iwa_A           99 IKN-FTHQMKDGWGL--ATDGKILY-GSDGTSILYEIDPHTF---------KLIKKHNVKYNGHRVIRLNELEYI-NG-E  163 (266)
T ss_dssp             EEE-EECCSSSCCEE--EECSSSEE-EECSSSEEEEECTTTC---------CEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred             EEE-EECCCCCeEEE--EECCCEEE-EECCCCeEEEEECCCC---------cEEEEEEECCCCcccccceeEEEE-CC-E
Confidence            543 3322 222334  44566544 5557889999999886         444444422  1   236678888 45 5


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecC-----------CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          419 LLATGSTDKMVKLWDLSNNQPSCIASRNP-----------KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      +.+....++.|.+.|..+++........+           .......++|+|++..+++++...+.|.+.++....
T Consensus       164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            66666568899999999998544444321           113568999999998888988888999999987643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.84  E-value=2.6e-06  Score=82.79  Aligned_cols=228  Identities=11%  Similarity=0.087  Sum_probs=138.6

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+..|.+++.++.|..+|..++........                           ........... +  ..++.++.
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~---------------------------~~~~~~~p~~~-~--~~v~v~~~  151 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKV---------------------------AGEALSRPVVS-D--GLVLIHTS  151 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEEC---------------------------SSCCCSCCEEE-T--TEEEEECT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeC---------------------------CCceEcCCEEE-C--CEEEEEcC
Confidence            366788888899999999876543321110                           00001111122 2  37888889


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCe-----EEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCC-----eEE
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKV-----QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VES  357 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----v~~  357 (502)
                      ++.|..+|..+++.+..+.......     ......  + ..++.++.++.|..+|..+++..-. ......     +..
T Consensus       152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~-~~~~~~~~~~~~~~  227 (376)
T 3q7m_A          152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQ-QRISQATGSTEIDR  227 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEE-EECCC---------
T ss_pred             CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEE-EecccCCCCccccc
Confidence            9999999999999887775422111     111222  2 4677788899999999987765321 111110     000


Q ss_pred             ---EEeCCC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          358 ---LAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       358 ---v~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                         +.-.|- ....+++++.+|.|..+|.+++         +.++....  .....+...  + ..|+.++.++.|..+|
T Consensus       228 ~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---------~~~w~~~~--~~~~~~~~~--~-~~l~~~~~~g~l~~~d  293 (376)
T 3q7m_A          228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---------QIMWKREL--GSVNDFIVD--G-NRIYLVDQNDRVMALT  293 (376)
T ss_dssp             --CCCCCCEEETTEEEEECTTSCEEEEETTTC---------CEEEEECC--CCEEEEEEE--T-TEEEEEETTCCEEEEE
T ss_pred             ccccCCCcEEECCEEEEEecCcEEEEEECCCC---------cEEeeccC--CCCCCceEE--C-CEEEEEcCCCeEEEEE
Confidence               101110 1236888888999999999887         55555442  234445444  3 6788888899999999


Q ss_pred             CCCCCeeEEEEec-CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          434 LSNNQPSCIASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       434 ~~~~~~~~~~~~~-~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..+++.  +.... .....+......  +. .|.+++.+|.|.++|..+++.+.+.
T Consensus       294 ~~tG~~--~w~~~~~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          294 IDGGVT--LWTQSDLLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             TTTCCE--EEEECTTTTSCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCCcE--EEeecccCCCcccCCEEE--CC-EEEEEeCCCeEEEEECCCCcEEEEE
Confidence            999884  33333 111222222232  23 3777888999999999999877543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.83  E-value=9.5e-07  Score=92.81  Aligned_cols=201  Identities=9%  Similarity=0.121  Sum_probs=128.4

Q ss_pred             ceeeEEecCCCCcEEEEEecCC-------------------cEEEEECCCCeeeEEecc--CC-------CCeEEEEEcC
Q 010769          268 SVLGLAWNKEFRNILASASADK-------------------QVKIWDVAAGKCNLTLEH--HT-------DKVQAVAWNH  319 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg-------------------~v~vwd~~~~~~~~~~~~--h~-------~~v~~l~~~~  319 (502)
                      ....+++.|. ..+|+.++.++                   +|..+|..+|+.+..++.  |.       .....+....
T Consensus       244 ~w~~~~~d~~-~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~  322 (677)
T 1kb0_A          244 MWDSMTFDAE-LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI  322 (677)
T ss_dssp             CCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE
T ss_pred             cccceeEcCC-CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc
Confidence            3456788888 45777776654                   599999999999887753  21       1122223333


Q ss_pred             CCC--cEEEEEECCCcEEEEeCCCCCCccceEeec----------CC-e------------------------EEEEeCC
Q 010769          320 HSP--QILLSGSFDRSVVMKDARISTHSGFKWAVA----------AD-V------------------------ESLAWDP  362 (502)
Q Consensus       320 ~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----------~~-v------------------------~~v~~~p  362 (502)
                      +|.  ..++.++.+|.|+++|.++++.+.......          +. +                        ..++++|
T Consensus       323 dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp  402 (677)
T 1kb0_A          323 AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP  402 (677)
T ss_dssp             TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET
T ss_pred             CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC
Confidence            442  578889999999999999887643211000          00 0                        1467788


Q ss_pred             CCCCEEEEEeC-------------------------------------------CCeEEEEECCCCCCCCCCCCCCccEE
Q 010769          363 HAEHSFVVSLE-------------------------------------------DGTIKGFDIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       363 ~~~~~l~~~~~-------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~  399 (502)
                      +.. ++++...                                           .|.|..||+.++         +.++.
T Consensus       403 ~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG---------~~~W~  472 (677)
T 1kb0_A          403 QTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ---------KAAWS  472 (677)
T ss_dssp             TTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT---------EEEEE
T ss_pred             CCC-EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC---------cEEee
Confidence            765 5655432                                           278999999887         66777


Q ss_pred             EecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC-CCCCEEEEEEcCCCCcEEEEEeC--------
Q 010769          400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGS--------  470 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~spd~~~llasg~~--------  470 (502)
                      ... ..++.+..+...+ .++++++.||.+++||..+++.  +..+.. +.....-+.|..+|+..+++.+.        
T Consensus       473 ~~~-~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~--lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~  548 (677)
T 1kb0_A          473 VEH-VSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEK--LWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLA  548 (677)
T ss_dssp             EEE-SSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE--EEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHH
T ss_pred             cCC-CCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCce--eeeeeCCCCcccCCEEEEeCCEEEEEEeccCCcccccc
Confidence            653 3445555566666 6888899999999999999984  334332 22222345567788644544332        


Q ss_pred             --------CCcEEEEECCCCc
Q 010769          471 --------KGKLEIWDTLSDA  483 (502)
Q Consensus       471 --------dg~i~vwd~~~~~  483 (502)
                              .+.+.+|.+....
T Consensus       549 ~~~~~~~~~~~l~~f~l~~~a  569 (677)
T 1kb0_A          549 ARATERQGPGTVYTFVVGGKA  569 (677)
T ss_dssp             CCSCSCCCCCEEEEEEETCBC
T ss_pred             ccccccCCCCeEEEEeccccc
Confidence                    3678888886433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.83  E-value=2.7e-07  Score=87.82  Aligned_cols=218  Identities=12%  Similarity=0.063  Sum_probs=141.5

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      +..|.+|+.++.|..++.. +.....                           ...+...+.++...++ + .|+.|+.+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~---------------------------~~~~~~~~~~~~~~~~-g-~l~vgt~~  156 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWR---------------------------FKTKKAIYATPIVSED-G-TIYVGSND  156 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEE---------------------------EECSSCCCSCCEECTT-S-CEEEECTT
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEE---------------------------EcCCCceeeeeEEcCC-C-EEEEEcCC
Confidence            5567778888999999876 322111                           0112234556666666 3 36678888


Q ss_pred             CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEE
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l  368 (502)
                      +.|..||.. ++.+..+......+.++...+++ . +..++  +.|..+| .++............+.++...+++  .+
T Consensus       157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g--~l  228 (330)
T 3hxj_A          157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG--TI  228 (330)
T ss_dssp             SEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS--CE
T ss_pred             CEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC--eE
Confidence            999999998 88777776556667777787777 4 44444  8899999 5443322112223457777787765  47


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC
Q 010769          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK  448 (502)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~  448 (502)
                      ++++.++.|..++. ++         ..++.+......+.++.+.+++  .|..++.+|.|..+|. +++.  +......
T Consensus       229 ~v~t~~~gl~~~~~-~g---------~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~g~~--~~~~~~~  293 (330)
T 3hxj_A          229 YVTSLDGHLYAINP-DG---------TEKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-DGTE--KWNFETG  293 (330)
T ss_dssp             EEEETTTEEEEECT-TS---------CEEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT-TSCE--EEEEECS
T ss_pred             EEEcCCCeEEEECC-CC---------CEeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC-CCcE--EEEEEcC
Confidence            77888888888874 32         4455555555545566666544  5777888888999996 5553  3333334


Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       449 ~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ...+.++...+++.  |..|+.+|.+++.....
T Consensus       294 ~~~~~~~~~d~~g~--l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          294 SWIIATPVIDENGT--IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             SCCCSCCEECTTCC--EEEECTTSCEEEEEC--
T ss_pred             CccccceEEcCCCE--EEEEcCCCeEEEEeccc
Confidence            45577778888886  55688999999887654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.82  E-value=1e-07  Score=92.54  Aligned_cols=199  Identities=16%  Similarity=0.168  Sum_probs=131.1

Q ss_pred             eeEEec--CCCCcEEEEEecCCcEEEEECCCC----eeeEEec-------cCCCCeEEEEEcCCCCcEEEEEECC-----
Q 010769          270 LGLAWN--KEFRNILASASADKQVKIWDVAAG----KCNLTLE-------HHTDKVQAVAWNHHSPQILLSGSFD-----  331 (502)
Q Consensus       270 ~~l~~~--~~~~~~l~sgs~Dg~v~vwd~~~~----~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~~~d-----  331 (502)
                      .+..++  ++.+.++++|..+++|.|+|+.+.    +.+.++.       ........+...|++  +++++..+     
T Consensus        85 ~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~  162 (462)
T 2ece_A           85 LCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEG  162 (462)
T ss_dssp             GSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCS
T ss_pred             cccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCC
Confidence            344456  776667777888999999999755    6666663       111245667888998  66666555     


Q ss_pred             -CcEEEEeCCCCCCccceEeec-C---CeEEEEeCCCCCCEEEEEe-------------------CCCeEEEEECCCCCC
Q 010769          332 -RSVVMKDARISTHSGFKWAVA-A---DVESLAWDPHAEHSFVVSL-------------------EDGTIKGFDIRTAKS  387 (502)
Q Consensus       332 -g~i~vwd~~~~~~~~~~~~~~-~---~v~~v~~~p~~~~~l~~~~-------------------~dg~i~i~d~~~~~~  387 (502)
                       |.|.++|..+.+... .+... .   -...+.|+|++. .++++.                   ...+|.+||+.+.  
T Consensus       163 ~g~v~vlD~~T~~v~~-~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--  238 (462)
T 2ece_A          163 PGGILMLDHYSFEPLG-KWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--  238 (462)
T ss_dssp             CCEEEEECTTTCCEEE-ECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--
T ss_pred             CCeEEEEECCCCeEEE-EEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--
Confidence             789999999887654 33222 1   123477899866 666663                   3689999999875  


Q ss_pred             CCCCCCCCccEEEecC-C-CCeeEEEE--cCCCCCEEEEEe-----CCCcEEEEECCCCCeeEEEE--ecCC--------
Q 010769          388 DPDSTSQQSSFTLHAH-D-KAVCTISY--NPLVPNLLATGS-----TDKMVKLWDLSNNQPSCIAS--RNPK--------  448 (502)
Q Consensus       388 ~~~~~~~~~~~~~~~h-~-~~v~~l~~--sp~~~~~l~t~s-----~dg~i~vwd~~~~~~~~~~~--~~~~--------  448 (502)
                             +.+.++... . .....+.|  +|++...++++-     .+++|.+|....+.......  ....        
T Consensus       239 -------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          239 -------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             -------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred             -------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence                   455555542 1 23445555  999844444555     67788887765543222221  1110        


Q ss_pred             --------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          449 --------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       449 --------~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                              ......|.++||+++|+++.-..+.|.+||+..
T Consensus       312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                    234678999999999888777789999999963

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.80  E-value=4.7e-06  Score=81.27  Aligned_cols=210  Identities=6%  Similarity=0.043  Sum_probs=138.2

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      ..+..|+|.+..+.++++-...+.|..+++..+.....+.........+++.+.+..++++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            45789999987565666666778999999887654444433334566788887664677777777889888887543322


Q ss_pred             ceEeecCCeEEEEeCCCCCCEEEEEeCC-CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769          347 FKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ...........++++|.+..++++-... +.|..+++...         .........-.....|+|+|.+..+.++-+.
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---------~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~  266 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS---------GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK  266 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC---------CcEEEEECCCCCeeeEEEeCCCCEEEEEECC
Confidence            1212234578899999777556665555 78888887643         1222222233457899999876466666667


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .+.|..+++.......+  ..........+++.. + .++.+-...+.|..++..+++.+..+.
T Consensus       267 ~~~I~~~d~dG~~~~~~--~~~~~~~P~giav~~-~-~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          267 HHVIERANLDGSHRKAV--ISQGLPHPFAITVFE-D-SLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTEEEEECTTSCSCEEE--ECSSCSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEeCCCCeeEEE--EECCCCCceEEEEEC-C-EEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            78899999876543222  222345677888833 3 467777778889999976766554443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.78  E-value=1e-07  Score=91.61  Aligned_cols=212  Identities=9%  Similarity=0.044  Sum_probs=126.0

Q ss_pred             cceeeEEecCCCCcEEEEEe--cCCcEEEEECCCCeeeEEe-------ccCCCCeEEEEEcCCCCcEEEEEEC-----CC
Q 010769          267 DSVLGLAWNKEFRNILASAS--ADKQVKIWDVAAGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSF-----DR  332 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs--~Dg~v~vwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~~l~s~~~-----dg  332 (502)
                      ..+..|++++++ .++++..  .++.++||.+.+++.. .+       ..|-..+..+++.+++ +++++-..     ++
T Consensus        17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence            578999999995 4777754  2343555655455532 22       2345689999999998 66555433     57


Q ss_pred             cEEEEeCCCCCCccceEe------ecCCeEEEEeCCCCCCEEEEEe---CCCeEEEEECCCCCCCCCC------CCCCcc
Q 010769          333 SVVMKDARISTHSGFKWA------VAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDS------TSQQSS  397 (502)
Q Consensus       333 ~i~vwd~~~~~~~~~~~~------~~~~v~~v~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~------~~~~~~  397 (502)
                      .|.+||+.+++.......      ....+..+++++.+...+++..   .++.|.+||+.++......      ......
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence            899999987764332211      1234688999986554455554   6789999998765210000      000000


Q ss_pred             EEEec--------------CCCCeeEEEEcCCCCCEEEEEeCCC-cEEEEECC---CCCe-----eEEEEecCCCCCEEE
Q 010769          398 FTLHA--------------HDKAVCTISYNPLVPNLLATGSTDK-MVKLWDLS---NNQP-----SCIASRNPKAGAVFS  454 (502)
Q Consensus       398 ~~~~~--------------h~~~v~~l~~sp~~~~~l~t~s~dg-~i~vwd~~---~~~~-----~~~~~~~~~~~~v~~  454 (502)
                      ....+              ....+..|+|+|++ +.|+.+...+ .|..++..   ....     .......++.+....
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg  252 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG  252 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence            00000              01246889999998 7777766655 45444431   1110     000011122234567


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          455 VAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       455 ~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      ++++++|. ++++....+.|.+||..+++
T Consensus       253 ia~d~~G~-l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          253 ISIDKDHN-IYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             EEECTTCC-EEEEEGGGTEEEEEETTTTE
T ss_pred             EEECCCCC-EEEEccCCCeEEEEECCCCC
Confidence            89999997 68888888999999985554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.76  E-value=1.5e-05  Score=77.99  Aligned_cols=212  Identities=12%  Similarity=0.054  Sum_probs=138.2

Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCC----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  341 (502)
                      ...+..|+|.+..+.++.+-...+.|+.+++...    .....+.........|++.+.+.+++++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            4568899999875656666666788999998752    223333334456788999886547777777788999999876


Q ss_pred             CCCccceEeecCCeEEEEeCCCCCCEEEEEeC-CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769          342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       342 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ................++++|.+..++++-.. .+.|...++...         .........-.....|++++.+..+.
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~---------~~~~~~~~~l~~P~glavd~~~~~lY  261 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRLY  261 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC---------ccEEEEECCCCceEEEEEEeCCCEEE
Confidence            54333222233457899999976645554433 478888888643         22222223335678999998774555


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ++-+..+.|..+|+.......+...........++++..  .+++.+-...+.|..++..+++.+..+
T Consensus       262 ~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~--~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          262 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             EEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET--TEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             EEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC--CEEEEecCCCCeEEEEEcCCCCceEEE
Confidence            665667889999997665444443333345567787743  346777777789999997777665444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.73  E-value=1.6e-05  Score=76.31  Aligned_cols=208  Identities=5%  Similarity=0.052  Sum_probs=137.5

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      ..+..|+|.+..+.++.+-...+.|..+++..+.....+.........+++.+.+..++++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            34789999987565666666778999999886654443433334567888987664777777778899999987544322


Q ss_pred             ceEeecCCeEEEEeCCCCCCEEEEEeCC-CeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEEEEEe
Q 010769          347 FKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ...........++++|.+..++++-... +.|..+++...          ....+ ...-.....|+++|.+..+.++-+
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~----------~~~~~~~~~~~~PnGla~d~~~~~lY~aD~  222 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS----------GRRIIADTHLFWPNGLTIDYAGRRMYWVDA  222 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----------SCEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC----------CcEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence            1112234578899999777566665555 78988887643          11222 122345689999987746666666


Q ss_pred             CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..+.|..+++.......+.  .........+++. .+ .++.+-...+.|..++..+++.+..+
T Consensus       223 ~~~~I~~~~~dG~~~~~~~--~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          223 KHHVIERANLDGSHRKAVI--SQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             TTTEEEEEETTSCSCEEEE--CSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCEEEEEeCCCCceEEEE--eCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCCccEEe
Confidence            7788999998765432222  2234567788883 33 46777777788998886666655443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.72  E-value=6.2e-06  Score=78.30  Aligned_cols=258  Identities=9%  Similarity=-0.019  Sum_probs=143.3

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      |-++.|       .++++++.++..++.|..|+...... ..+......... .   ...   .............+.+|
T Consensus        21 p~~i~~-------d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~-~---~~~---g~~~~~~~~~~~~p~gi   85 (322)
T 2fp8_A           21 PNSFTF-------DSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNK-A---FCE---NSTDAEKRPLCGRTYDI   85 (322)
T ss_dssp             CCCEEC-------CTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCH-H---HHT---TCCCGGGHHHHCCEEEE
T ss_pred             ceEEEE-------cCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccc-c---ccc---cccchhccccCCCCceE
Confidence            455655       67888888888889999998764211 110000000000 0   000   00000000112357889


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEec----c-CCCCeEEEEEcC-CCCcEEEEEEC----------------
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLE----H-HTDKVQAVAWNH-HSPQILLSGSF----------------  330 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~----~-h~~~v~~l~~~~-~~~~~l~s~~~----------------  330 (502)
                      ++.+..+ .|+.+...+.|..+|..++.. ..+.    + .......+++.+ +| ++.++-..                
T Consensus        86 ~~~~~~g-~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~  162 (322)
T 2fp8_A           86 SYNLQNN-QLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSD  162 (322)
T ss_dssp             EEETTTT-EEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTC
T ss_pred             EEcCCCC-cEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccC
Confidence            9997324 455555555688898776543 2221    1 123578899999 88 66665432                


Q ss_pred             -CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeE
Q 010769          331 -DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  409 (502)
Q Consensus       331 -dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~  409 (502)
                       .+.|..||..+..... ..........++|+|++..++++-+..+.|..|++.....       .....+....+ ...
T Consensus       163 ~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-------~~~~~~~~~~g-P~g  233 (322)
T 2fp8_A          163 KTGRLIKYDPSTKETTL-LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-------GTAEVLVKIPN-PGN  233 (322)
T ss_dssp             CCEEEEEEETTTTEEEE-EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-------TCEEEEEECSS-EEE
T ss_pred             CCceEEEEeCCCCEEEE-eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-------CccceEEeCCC-CCC
Confidence             3678888876554322 2222345677999998764555556778999999875311       11111111223 788


Q ss_pred             EEEcCCCCCEEEEEeC----------CCcEEEEECCCCCeeEEEEecC-C-CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769          410 ISYNPLVPNLLATGST----------DKMVKLWDLSNNQPSCIASRNP-K-AGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       410 l~~sp~~~~~l~t~s~----------dg~i~vwd~~~~~~~~~~~~~~-~-~~~v~~~~~spd~~~llasg~~dg~i~vw  477 (502)
                      +++.++| ++.++...          .+.|..+|.. ++......... . ...++++++ .++. |+++....+.|.++
T Consensus       234 i~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~  309 (322)
T 2fp8_A          234 IKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGIL  309 (322)
T ss_dssp             EEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEE
T ss_pred             eEECCCC-CEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEE
Confidence            9999988 66555543          4668888874 44322222221 1 234666666 3554 67666677889999


Q ss_pred             ECCC
Q 010769          478 DTLS  481 (502)
Q Consensus       478 d~~~  481 (502)
                      ++..
T Consensus       310 ~~~~  313 (322)
T 2fp8_A          310 VYDK  313 (322)
T ss_dssp             EC--
T ss_pred             eccc
Confidence            8754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.69  E-value=1.4e-05  Score=75.14  Aligned_cols=231  Identities=14%  Similarity=0.096  Sum_probs=136.5

Q ss_pred             CCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccce
Q 010769          190 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  269 (502)
Q Consensus       190 ~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  269 (502)
                      ..+|..+.|       +++++++++-...+.|..|+.+..  ...                        ...   ....+
T Consensus        31 ~~~pegia~-------~~~g~lyv~d~~~~~I~~~d~~g~--~~~------------------------~~~---~~~~p   74 (306)
T 2p4o_A           31 NTFLENLAS-------APDGTIFVTNHEVGEIVSITPDGN--QQI------------------------HAT---VEGKV   74 (306)
T ss_dssp             TCCEEEEEE-------CTTSCEEEEETTTTEEEEECTTCC--EEE------------------------EEE---CSSEE
T ss_pred             CCCcceEEE-------CCCCCEEEEeCCCCeEEEECCCCc--eEE------------------------EEe---CCCCc
Confidence            355667777       678887777777889999887531  000                        001   12358


Q ss_pred             eeEEecCCCCcEEEEEec-CC-cEEEEECCCCeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          270 LGLAWNKEFRNILASASA-DK-QVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~-Dg-~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      .+|++.+++. ++++... ++ .|..++..+++...... ........++..+.+ ..+++-...+.|.++|........
T Consensus        75 ~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v  152 (306)
T 2p4o_A           75 SGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSI  152 (306)
T ss_dssp             EEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeE
Confidence            8999999954 5554433 22 47777777776543222 112233455555544 455555468889999876432110


Q ss_pred             c----------eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769          347 F----------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV  416 (502)
Q Consensus       347 ~----------~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~  416 (502)
                      .          ....-.....+  +|++..++++-+..+.|..|++.....      ......+.. ......+++.++|
T Consensus       153 ~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~------~~~~~~~~~-~~~P~gi~vd~dG  223 (306)
T 2p4o_A          153 WLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK------PGEPEIFVE-QTNIDDFAFDVEG  223 (306)
T ss_dssp             EEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC------BCCCEEEEE-SCCCSSEEEBTTC
T ss_pred             EEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC------CCccEEEec-cCCCCCeEECCCC
Confidence            0          00011123444  677665666667788999999875200      011111211 1346789999998


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc---CCCCcEEEEEe
Q 010769          417 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS---EDSPFVLAIGG  469 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s---pd~~~llasg~  469 (502)
                       +++++....+.|.+++.. ++...+..........++++|.   |++..|+++..
T Consensus       224 -~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          224 -NLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             -CEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             -CEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence             777777778889999975 5432233333334568999998   88876666554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.67  E-value=1.1e-06  Score=83.50  Aligned_cols=180  Identities=10%  Similarity=0.006  Sum_probs=121.0

Q ss_pred             EEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEe
Q 010769          281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW  360 (502)
Q Consensus       281 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~  360 (502)
                      .|..++.++.|..+|.. ++....+..+...+.++...+++ . +..++.++.|..+|.. +............+.++..
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  184 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI  184 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence            67788889999999988 77776666555566777777766 4 6667888999999988 4433222222344566667


Q ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       361 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                      .+++.  +++++  +.|..|| .++         ...+........+.++...+++  .|..++.++.|..++. +++. 
T Consensus       185 d~~g~--l~v~t--~~l~~~d-~~g---------~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~-~g~~-  246 (330)
T 3hxj_A          185 GKDGT--IYFGS--DKVYAIN-PDG---------TEKWNFYAGYWTVTRPAISEDG--TIYVTSLDGHLYAINP-DGTE-  246 (330)
T ss_dssp             CTTCC--EEEES--SSEEEEC-TTS---------CEEEEECCSSCCCSCCEECTTS--CEEEEETTTEEEEECT-TSCE-
T ss_pred             cCCCE--EEEEe--CEEEEEC-CCC---------cEEEEEccCCcceeceEECCCC--eEEEEcCCCeEEEECC-CCCE-
Confidence            66543  66666  8899999 554         5566666566778888888865  4566677788888875 3432 


Q ss_pred             EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       441 ~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                       +.........+.++.+.+++.  |..++.+|.|..+|. +++.+.
T Consensus       247 -~~~~~~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~-~g~~~~  288 (330)
T 3hxj_A          247 -KWRFKTGKRIESSPVIGNTDT--IYFGSYDGHLYAINP-DGTEKW  288 (330)
T ss_dssp             -EEEEECSSCCCSCCEECTTSC--EEEECTTCEEEEECT-TSCEEE
T ss_pred             -eEEeeCCCCccccceEcCCCe--EEEecCCCCEEEECC-CCcEEE
Confidence             333333333344566666775  566788888999996 555543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.64  E-value=4.6e-06  Score=75.99  Aligned_cols=198  Identities=9%  Similarity=-0.012  Sum_probs=127.9

Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecC--CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccc
Q 010769          191 AFPLCMAWLDCPLKDREKGNFMAVGSM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS  268 (502)
Q Consensus       191 ~~~~~~~w~~~~~~~s~~~~~la~g~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  268 (502)
                      .+|..+.+       ++++.+.++.+.  ++.|+++|+.++..+....                         +..+ ..
T Consensus        21 ~f~~Gl~~-------~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-------------------------l~~~-~f   67 (266)
T 2iwa_A           21 AFTQGLVY-------AENDTLFESTGLYGRSSVRQVALQTGKVENIHK-------------------------MDDS-YF   67 (266)
T ss_dssp             CCEEEEEE-------CSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-------------------------CCTT-CC
T ss_pred             CCcccEEE-------eCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-------------------------cCCC-cc
Confidence            34556666       676655555443  5799999998755433211                         1111 11


Q ss_pred             eeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce
Q 010769          269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  348 (502)
                      ...+++..  ..+.++.-.++.|.++|..+.+.+.++......-..  +++++..++ ++..++.|.++|..+.+.....
T Consensus        68 geGi~~~g--~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~-vs~gs~~l~viD~~t~~v~~~I  142 (266)
T 2iwa_A           68 GEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILY-GSDGTSILYEIDPHTFKLIKKH  142 (266)
T ss_dssp             EEEEEEET--TEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEECSSSEE-EECSSSEEEEECTTTCCEEEEE
T ss_pred             eEEEEEeC--CEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEECCCEEE-EECCCCeEEEEECCCCcEEEEE
Confidence            22455543  445566667899999999999999988532122233  445664444 5557899999999887655432


Q ss_pred             Eeec-----CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-------------CCCeeEE
Q 010769          349 WAVA-----ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------------DKAVCTI  410 (502)
Q Consensus       349 ~~~~-----~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~l  410 (502)
                      ....     ..++.+.|. ++ .+++....++.|.+.|..++         +.+..+...             ....++|
T Consensus       143 ~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg---------~V~~~I~~~g~~~~~~~~~~~~~~v~nGI  211 (266)
T 2iwa_A          143 NVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDG---------TLLGWILLPNLRKKLIDEGFRDIDVLNGI  211 (266)
T ss_dssp             ECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTC---------CEEEEEECHHHHHHHHHTTCTTCCCEEEE
T ss_pred             EECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCC---------cEEEEEECCCcccccccccccccCceEEE
Confidence            2111     236677777 44 35555556889999999987         555555421             1356899


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          411 SYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      +|+|++..+++|+...+.|.+.++...
T Consensus       212 a~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          212 AWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            999998788888888899988887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.59  E-value=9.3e-06  Score=73.16  Aligned_cols=182  Identities=10%  Similarity=0.080  Sum_probs=120.3

Q ss_pred             eeeEEecCCCCcEEEEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          269 VLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       269 V~~l~~~~~~~~~l~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      ...|.|+ + +.++.+++.+|  .|+++|+.+++.+.++.... ........+.+..+.++.-.++.+.+||..+.+...
T Consensus        45 tqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           45 TEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            4788898 4 46777777776  89999999999988886433 333322222343566666678999999999887665


Q ss_pred             ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC--C---CCeeEEEEcCCCCCEEE
Q 010769          347 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--D---KAVCTISYNPLVPNLLA  421 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h--~---~~v~~l~~sp~~~~~l~  421 (502)
                       .......-..+++  ++. .++.+..++.|.++|..+.         +.+.++...  .   ..++.+.|. +| .+.+
T Consensus       122 -ti~~~~eG~glt~--dg~-~L~~SdGs~~i~~iDp~T~---------~v~~~I~V~~~g~~~~~lNELe~~-~G-~lya  186 (262)
T 3nol_A          122 -SFNYDGEGWGLTH--NDQ-YLIMSDGTPVLRFLDPESL---------TPVRTITVTAHGEELPELNELEWV-DG-EIFA  186 (262)
T ss_dssp             -EEECSSCCCCEEE--CSS-CEEECCSSSEEEEECTTTC---------SEEEEEECEETTEECCCEEEEEEE-TT-EEEE
T ss_pred             -EEECCCCceEEec--CCC-EEEEECCCCeEEEEcCCCC---------eEEEEEEeccCCccccccceeEEE-CC-EEEE
Confidence             3333333334443  455 4555555788999999886         445544432  2   334557776 44 5565


Q ss_pred             EEeCCCcEEEEECCCCCeeEEEEecC----------CCCCEEEEEEcCCCCcEEEEE
Q 010769          422 TGSTDKMVKLWDLSNNQPSCIASRNP----------KAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~~~~~~~~~----------~~~~v~~~~~spd~~~llasg  468 (502)
                      ..-.++.|.+.|..+++........+          .....+.|+|+|++..++++|
T Consensus       187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            55568899999999998654444421          123578999999988656654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.58  E-value=9.1e-05  Score=67.03  Aligned_cols=204  Identities=12%  Similarity=0.146  Sum_probs=133.3

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  342 (502)
                      +-...+..|+|+|+++.++++...++.|...|+. ++.++++.. -....-.|++.+++ .++++.-.++.+.++++...
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTT
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCC
Confidence            4556799999999866566667788999999988 888777732 23567888998887 66666667788999887655


Q ss_pred             CCcc--ceE-------eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-------ecCCCC
Q 010769          343 THSG--FKW-------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-------HAHDKA  406 (502)
Q Consensus       343 ~~~~--~~~-------~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~~h~~~  406 (502)
                      ....  ...       ........++|+|.+.. |+++.......+|.+.....      ...+..+       ..+...
T Consensus       102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~-L~va~E~~p~~i~~~~g~~~------~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A          102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT-FWFFKEKNPIEVYKVNGLLS------SNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE-EEEEEESSSEEEEEEESTTC------SSCCEEEECHHHHHTCCSSC
T ss_pred             CeeeeeeeeccccccccccCCcceEEEeCCCCE-EEEEECcCCceEEEEccccc------CCceeeecchhhccccccCC
Confidence            4311  111       12344699999998764 44444444444444431100      0111111       113346


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      +.+++++|....+++.....+.|.++|.... +.....+...       ...--.|+|.++|+ ++++ +.-+.++++.-
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEEEC
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEEEe
Confidence            7999999987677777777888999997754 5455555421       13568999999997 5554 66666666643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.58  E-value=6.3e-06  Score=74.25  Aligned_cols=180  Identities=7%  Similarity=-0.004  Sum_probs=123.0

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeE--EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ--AVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  345 (502)
                      -...|.|+.  +.++.+.+.+|.|+++|+.+++.+.++ . .....  .+++.  +..+.++.-.++.+.+||..+.+..
T Consensus        56 ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           56 FTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             CEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             ccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence            347888874  468888889999999999999988877 3 23333  35554  4466777778999999999987766


Q ss_pred             cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec--CCC---CeeEEEEcCCCCCEE
Q 010769          346 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDK---AVCTISYNPLVPNLL  420 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--h~~---~v~~l~~sp~~~~~l  420 (502)
                      .. +.....-..+++  ++. .|+++..++.|.++|..+.         +.+.++..  +..   .++.+.|. +| .+.
T Consensus       130 ~t-i~~~~eGwGLt~--Dg~-~L~vSdGs~~l~~iDp~T~---------~v~~~I~V~~~g~~v~~lNeLe~~-dG-~ly  194 (268)
T 3nok_A          130 RT-TRYSGEGWGLCY--WNG-KLVRSDGGTMLTFHEPDGF---------ALVGAVQVKLRGQPVELINELECA-NG-VIY  194 (268)
T ss_dssp             EE-EECSSCCCCEEE--ETT-EEEEECSSSEEEEECTTTC---------CEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred             EE-EeCCCceeEEec--CCC-EEEEECCCCEEEEEcCCCC---------eEEEEEEeCCCCcccccccccEEe-CC-EEE
Confidence            53 333333344554  344 5666667899999999886         44444443  222   34667777 44 555


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecC-----------CCCCEEEEEEcCCCCcEEEEE
Q 010769          421 ATGSTDKMVKLWDLSNNQPSCIASRNP-----------KAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~v~~~~~spd~~~llasg  468 (502)
                      +..-....|.+.|..+++......+.+           .....+.|+|+|++..+++||
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            555568899999999998544444321           224678999999887667765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.57  E-value=2.4e-06  Score=89.71  Aligned_cols=242  Identities=10%  Similarity=0.074  Sum_probs=139.7

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+..|++++.++.|..+|..+++.+.......                ..  ........++    +. + + .++.++.
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~----------------~~--~~~~~~~~P~----v~-~-~-~v~vg~~  170 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTD----------------PA--KPYSITGAPR----VV-K-G-KVIIGNG  170 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSC----------------TT--SSCBCCSCCE----EE-T-T-EEEECCB
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCC----------------CC--CcceecCCCE----EE-C-C-EEEEeCC
Confidence            36778888999999999998765543221100                00  0000001111    11 2 3 4555543


Q ss_pred             ------CCcEEEEECCCCeeeEEeccCC-------------------------------CCeEEEEEcCCCCcEEEEEEC
Q 010769          288 ------DKQVKIWDVAAGKCNLTLEHHT-------------------------------DKVQAVAWNHHSPQILLSGSF  330 (502)
Q Consensus       288 ------Dg~v~vwd~~~~~~~~~~~~h~-------------------------------~~v~~l~~~~~~~~~l~s~~~  330 (502)
                            +|.|..+|..+|+.+.++....                               .....+++.+.. .+++.++.
T Consensus       171 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~  249 (668)
T 1kv9_A          171 GAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTG  249 (668)
T ss_dssp             CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECC
T ss_pred             CCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCC
Confidence                  5899999999999988774210                               011246777776 67777776


Q ss_pred             CC-------------------cEEEEeCCCCCCccceEee---------cCCeEEEEeCCCCC--CEEEEEeCCCeEEEE
Q 010769          331 DR-------------------SVVMKDARISTHSGFKWAV---------AADVESLAWDPHAE--HSFVVSLEDGTIKGF  380 (502)
Q Consensus       331 dg-------------------~i~vwd~~~~~~~~~~~~~---------~~~v~~v~~~p~~~--~~l~~~~~dg~i~i~  380 (502)
                      ++                   .|..+|.++++..-.....         ..+.....+..++.  ..+++++.+|.++++
T Consensus       250 ~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l  329 (668)
T 1kv9_A          250 NGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL  329 (668)
T ss_dssp             CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence            65                   3899999888754322111         02222222222332  258888999999999


Q ss_pred             ECCCCCCCCCCCCCCccEEEecCC------------C------------------------CeeEEEEcCCCCCEEEEE-
Q 010769          381 DIRTAKSDPDSTSQQSSFTLHAHD------------K------------------------AVCTISYNPLVPNLLATG-  423 (502)
Q Consensus       381 d~~~~~~~~~~~~~~~~~~~~~h~------------~------------------------~v~~l~~sp~~~~~l~t~-  423 (502)
                      |..+++         .+.......            .                        .-..++++|.. .+++.. 
T Consensus       330 D~~tG~---------~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~-g~~yv~~  399 (668)
T 1kv9_A          330 DRTNGK---------LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT-GLVYIPY  399 (668)
T ss_dssp             ETTTCC---------EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEE
T ss_pred             ECCCCC---------EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC-CEEEEec
Confidence            998873         221111000            0                        01126777765 444431 


Q ss_pred             -----------------------------------eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEE
Q 010769          424 -----------------------------------STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       424 -----------------------------------s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg  468 (502)
                                                         ..+|.|..||+.+++.  +.....+ .+.....+...+. +++++
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~--~W~~~~~-~~~~~~~~~t~gg-~vf~g  475 (668)
T 1kv9_A          400 QEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA--AWKVPYP-THWNGGTLSTAGN-LVFQG  475 (668)
T ss_dssp             EECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE--EEEEEES-SSCCCCEEEETTT-EEEEE
T ss_pred             cccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE--EEEccCC-CCCcCceeEeCCC-EEEEE
Confidence                                               1347899999999984  3333221 2222223334455 57778


Q ss_pred             eCCCcEEEEECCCCccccccc
Q 010769          469 GSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       469 ~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +.+|.|++||..+++.+.+.-
T Consensus       476 ~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          476 TAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             CTTSEEEEEETTTCCEEEEEE
T ss_pred             CCcccchhhhhhcChhheEec
Confidence            999999999999999886553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.57  E-value=6.1e-05  Score=79.86  Aligned_cols=212  Identities=12%  Similarity=0.064  Sum_probs=137.2

Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCC----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  341 (502)
                      ...+..|+|.+..+.++++-...+.|+.+++...    .....+.........|++.+.+.+++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            3567889999865656666667788999998753    223333333456778899887757777777789999999876


Q ss_pred             CCCccceEeecCCeEEEEeCCCCCCEEEEEeCC-CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769          342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       342 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ................|+++|....++++-... +.|...++...         .....+...-.....|++.+...+++
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---------~~~~lv~~~l~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRLY  573 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------CEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---------ceEEEEeCCCCCceEEEEecCCCeEE
Confidence            543332222334578999999766455554333 78888888643         22222233335688999998764555


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ++=...+.|..+++.......+...........+|++..+  +|+.+-...+.|...+..+++.+..+
T Consensus       574 waD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~--~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          574 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT--EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC--EEEEEECCCCEEEEEeCCCCcceEEe
Confidence            5555677899999977654444333233344667777443  46777777788998888777665544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.56  E-value=5e-06  Score=87.27  Aligned_cols=277  Identities=9%  Similarity=-0.016  Sum_probs=142.4

Q ss_pred             cccccC-CCceEEEEEecCCc------ceeEEEEEecCCCCCCceeeeeccccCCCcce--eeeecCCCCCCCCCCEEEE
Q 010769          144 DMTINP-NDAVIVCARNEDDV------SHLEVYILEESDGGDPNLYVHHHIIIPAFPLC--MAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       144 ~~~~~p-~~~~l~~~~~~~~~------~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~w~~~~~~~s~~~~~la~  214 (502)
                      .+++.| ++++++.|+...+.      ..-.++.|+.....-..+.   ....+....|  ...       ..+++++++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~---~~~~~~~~~~~~~~~-------~~~g~lyv~  259 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT---VTVTKHDMFCPGISM-------DGNGQIVVT  259 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE---EEECSCCCSSCEEEE-------CTTSCEEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc---ccCCCCCCccccccC-------CCCCCEEEe
Confidence            556677 88888888754421      2236788877665211111   1111111122  222       468999999


Q ss_pred             ecC-CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe-cC----
Q 010769          215 GSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-AD----  288 (502)
Q Consensus       215 g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs-~D----  288 (502)
                      |+. ++.+++||..+..- .                        ....+. ....-.++...++ +.+++.|+ .+    
T Consensus       260 GG~~~~~v~~yd~~t~~W-~------------------------~~~~~~-~~R~~~s~~~~~d-g~iyv~GG~~~~~~~  312 (656)
T 1k3i_A          260 GGNDAKKTSLYDSSSDSW-I------------------------PGPDMQ-VARGYQSSATMSD-GRVFTIGGSWSGGVF  312 (656)
T ss_dssp             CSSSTTCEEEEEGGGTEE-E------------------------ECCCCS-SCCSSCEEEECTT-SCEEEECCCCCSSSC
T ss_pred             CCCCCCceEEecCcCCce-e------------------------ECCCCC-ccccccceEEecC-CeEEEEeCcccCCcc
Confidence            985 45899999763210 0                        000000 1111123445556 45777777 34    


Q ss_pred             -CcEEEEECCCCeeeEEe----ccCCCCeEEEEEcCCCCcEEEEEECCC---------cEEEEeCCCCCCccceEeec--
Q 010769          289 -KQVKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSPQILLSGSFDR---------SVVMKDARISTHSGFKWAVA--  352 (502)
Q Consensus       289 -g~v~vwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~~--  352 (502)
                       ..+.+||..+++....-    ......-....+..++ .+++.|+.+|         .+..||..+..-........  
T Consensus       313 ~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~  391 (656)
T 1k3i_A          313 EKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN  391 (656)
T ss_dssp             CCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEET
T ss_pred             cccceEeCCCCCcceeCCCccccccccccccceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccc
Confidence             57999999887643320    0000000001122333 4555565544         46778877654221111111  


Q ss_pred             -------CCeEEEEeCCCCCCEEEEEeCCC-----------eEEEEECCCCCCCCCCCCCCccEEE---ecCCC-CeeEE
Q 010769          353 -------ADVESLAWDPHAEHSFVVSLEDG-----------TIKGFDIRTAKSDPDSTSQQSSFTL---HAHDK-AVCTI  410 (502)
Q Consensus       353 -------~~v~~v~~~p~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~---~~h~~-~v~~l  410 (502)
                             ..-.++.|...+..++++|+.++           .|.+||..+.         . ...+   ..+.. .-.++
T Consensus       392 ~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~---------~-W~~~~~~~mp~~R~~~~~  461 (656)
T 1k3i_A          392 RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS---------P-NTVFASNGLYFARTFHTS  461 (656)
T ss_dssp             TEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC---------C-EEEECTTCCSSCCBSCEE
T ss_pred             cccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC---------C-eeEEccCCCCCCcccCCe
Confidence                   12344555444455777777532           5777776653         1 1111   11222 22344


Q ss_pred             EEcCCCCCEEEEEeCC-----------CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC
Q 010769          411 SYNPLVPNLLATGSTD-----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~  470 (502)
                      ...|++ ++++.|+.+           ..+.+||..+.+...+...........+..+.|+++ ++++||.
T Consensus       462 ~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~-v~v~GG~  530 (656)
T 1k3i_A          462 VVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGR-VFNGGGG  530 (656)
T ss_dssp             EECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred             EECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcE-EEecCCC
Confidence            566777 888888754           468999998876433322222222233455679998 6888875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.55  E-value=0.00017  Score=77.36  Aligned_cols=198  Identities=10%  Similarity=0.117  Sum_probs=130.6

Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEec-------cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  338 (502)
                      ...|.++...+++.  |..|+.. -|.+|+..+++......       .....|.++...++| . |-.|+.++-|..|+
T Consensus       262 ~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~  336 (795)
T 4a2l_A          262 SNYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYH  336 (795)
T ss_dssp             CSBEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEEC
T ss_pred             CCeEEEEEEcCCCC--EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeC
Confidence            35699999888743  4445555 58999988776543321       123579999999887 4 66678888899998


Q ss_pred             CCCCCCccceE------eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe---------cC
Q 010769          339 ARISTHSGFKW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---------AH  403 (502)
Q Consensus       339 ~~~~~~~~~~~------~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------~h  403 (502)
                      ...........      .....|.++...+++.  +.+|+.++-|..|+..+..          ...+.         ..
T Consensus       337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~----------~~~~~~~~~~~~~~l~  404 (795)
T 4a2l_A          337 PIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQR----------FTSYTLQEDESARGIG  404 (795)
T ss_dssp             GGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCC----------EEEECCC------CCS
T ss_pred             CCcccceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCc----------EEEEecCCCCcccCCC
Confidence            76543221110      1234588998888654  7788888889999987541          11111         12


Q ss_pred             CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec--CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       404 ~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ...|.++...+++ .+|..|+.++.|.+||..+++........  .....|.++...+++. +.+ |+. +.|.+|+..+
T Consensus       405 ~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwi-gt~-~Gl~~~~~~~  480 (795)
T 4a2l_A          405 SNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWL-GTL-SALVRFNPEQ  480 (795)
T ss_dssp             CSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEE-EES-SCEEEEETTT
T ss_pred             CccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEE-Eec-CceeEEeCCC
Confidence            4568899888876 64667777777999999887632221100  2345799999999887 343 444 4588999876


Q ss_pred             Ccc
Q 010769          482 DAG  484 (502)
Q Consensus       482 ~~~  484 (502)
                      +..
T Consensus       481 ~~~  483 (795)
T 4a2l_A          481 RSF  483 (795)
T ss_dssp             TEE
T ss_pred             CeE
Confidence            543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.53  E-value=2.7e-05  Score=69.55  Aligned_cols=183  Identities=12%  Similarity=0.084  Sum_probs=121.2

Q ss_pred             cceeeEEecCCCCcEEEEEecCC--cEEEEECCCCeeeEEeccCCCC-eEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769          267 DSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHHSPQILLSGSFDRSVVMKDARIST  343 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  343 (502)
                      .-...|.|++.  .++.+.+..|  .|+++|+.+++.+.++...... --.++..  +..+++..-.++.+.+||..+.+
T Consensus        21 ~ftqGL~~~~~--~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           21 AFTEGLFYLRG--HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             CCEEEEEEETT--EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             cccccEEEECC--EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            44668999863  4666766654  8999999999998887543221 1234443  43666667778999999999877


Q ss_pred             CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec--CC---CCeeEEEEcCCCCC
Q 010769          344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HD---KAVCTISYNPLVPN  418 (502)
Q Consensus       344 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~sp~~~~  418 (502)
                      ... .......-..+++  ++. .++++..++.|.++|..+.         +.+.++..  +.   ..++.+.+. +| .
T Consensus        97 ~~~-ti~~~~~Gwglt~--dg~-~L~vSdgs~~l~~iDp~t~---------~~~~~I~V~~~g~~~~~lNeLe~~-~G-~  161 (243)
T 3mbr_X           97 PRA-RFRYPGEGWALTS--DDS-HLYMSDGTAVIRKLDPDTL---------QQVGSIKVTAGGRPLDNLNELEWV-NG-E  161 (243)
T ss_dssp             EEE-EEECSSCCCEEEE--CSS-CEEEECSSSEEEEECTTTC---------CEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred             EEE-EEeCCCCceEEee--CCC-EEEEECCCCeEEEEeCCCC---------eEEEEEEEccCCcccccceeeEEe-CC-E
Confidence            655 3333334445554  345 4555666889999999886         44444443  22   244566666 34 5


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecC-----------CCCCEEEEEEcCCCCcEEEEE
Q 010769          419 LLATGSTDKMVKLWDLSNNQPSCIASRNP-----------KAGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~v~~~~~spd~~~llasg  468 (502)
                      +.+..-.+..|.+.|..+++......+.+           .....+.|+++|++..+++||
T Consensus       162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            55555567889999999998554444331           123578999999888666665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.52  E-value=9.4e-05  Score=69.85  Aligned_cols=208  Identities=10%  Similarity=0.092  Sum_probs=135.5

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeee-EEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN-LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  345 (502)
                      ..+..|.|.+..+.++.+-...+.|..+++..+... ..+...-.....+++.+.+..++++-...+.|.++++......
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            356789999875656666677789999998766321 2222223456778888766477777777889999998754332


Q ss_pred             cceEeecCCeEEEEeCCCCCCEEEEEe-CCCeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEEEEE
Q 010769          346 GFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      ............++++|.+..++++-. ..+.|..+++...          ....+ ...-...+.|+++|.+..+.++-
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~----------~~~~~~~~~l~~Pnglavd~~~~~lY~aD  184 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS----------SRFIIINSEIYWPNGLTLDYEEQKLYWAD  184 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC----------SCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC----------CeEEEEECCCCCccEEEEeccCCEEEEEE
Confidence            222123345788999987664444442 3678888887643          12222 22234568999999764666666


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +..+.|..+++.......+.  .........+++..+  .++.+-...+.|..++..+++.+..+
T Consensus       185 ~~~~~I~~~d~dG~~~~~~~--~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          185 AKLNFIHKSNLDGTNRQAVV--KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             TTTTEEEEEETTSCSCEEEE--CSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCCEEEEEcCCCCceEEEe--cCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCCceEEE
Confidence            67788999999765432332  223455778888643  36777677789999999887765444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.51  E-value=0.0002  Score=68.59  Aligned_cols=241  Identities=10%  Similarity=0.006  Sum_probs=142.5

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCC-CCCEEEEecCCC
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNFMAVGSMEP  219 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~-~~~~la~g~~dg  219 (502)
                      ...+....+. .+|+.+...      .|+.++....   .+....  .....|..++|       .+ ++.++.+-...+
T Consensus        35 ~~~C~~~~~~-~~ll~~~~~------~I~~i~~~g~---~~~~~~--~~~~~~~~l~~-------d~~~~~ly~~D~~~~   95 (349)
T 3v64_C           35 RRSCKALGPE-PVLLFANRI------DIRQVLPHRS---EYTLLL--NNLENAIALDF-------HHRRELVFWSDVTLD   95 (349)
T ss_dssp             SSCEEESSSC-CEEEEECBS------CEEEECTTSC---CEEEEE--CSCSCEEEEEE-------ETTTTEEEEEETTTT
T ss_pred             CCcccccccC-ceeEeeccc------ceEEEeCCCC---eeEEee--cCCCceEEEEE-------eccccEEEEEeccCC
Confidence            4455566664 444444333      4555554432   111111  11233566676       44 455555656678


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .|..++++......                           ...........|++.+.+++++++-...+.|.+.++...
T Consensus        96 ~I~r~~~~g~~~~~---------------------------~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  148 (349)
T 3v64_C           96 RILRANLNGSNVEE---------------------------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  148 (349)
T ss_dssp             EEEEEETTSCSCEE---------------------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEEecCCCCceE---------------------------EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence            89888886422100                           001112345788888765667777777789999998755


Q ss_pred             eeeEEeccCCCCeEEEEEcCCCCcEEEEEECC-CcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEE
Q 010769          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK  378 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~  378 (502)
                      .....+...-.....+++.|.+..++++-... +.|..+++............-.....++|+|.+..++++-...+.|.
T Consensus       149 ~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~  228 (349)
T 3v64_C          149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  228 (349)
T ss_dssp             SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence            43333333445678999999774666665555 78888888754332211122345788999987776666667788999


Q ss_pred             EEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      .+++...         .....+........++++. .+ .++++-...+.|..++..+++
T Consensus       229 ~~~~dG~---------~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          229 RANLDGS---------HRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EEETTSC---------SCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred             EEeCCCC---------ceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCC
Confidence            9998643         2222222234456777774 23 666666677888888855554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.48  E-value=0.00015  Score=77.88  Aligned_cols=279  Identities=10%  Similarity=0.137  Sum_probs=165.5

Q ss_pred             cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeec-cccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010769          142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH-IIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA  220 (502)
Q Consensus       142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~  220 (502)
                      |.++...+++++.+++.  .     .|+.|+....   .+..... ........++..       .++++ |.+|+.++-
T Consensus       133 i~~i~~d~~g~lwi~t~--~-----gl~~~~~~~~---~~~~~~~~~~~~~~i~~i~~-------d~~g~-lwigt~~~G  194 (795)
T 4a2l_A          133 VNGIEEISPEQLLISTP--E-----GLIMFDIKES---KFIDDSFSTAMHKTIASTLY-------RQGDQ-IYIGTSTDG  194 (795)
T ss_dssp             CCEEEEEETTEEEEEET--T-----EEEEEETTTT---EEECSSSCHHHHTCCEEEEE-------EETTE-EEEEESSSC
T ss_pred             EEEEEECCCCCEEEEEC--C-----ceEEEECCCC---EEEeccCCCCCCcceEEEEE-------CCCCC-EEEEECCCC
Confidence            77888888888776553  3     5777775543   2221111 000000122221       23455 444666555


Q ss_pred             EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe
Q 010769          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~  300 (502)
                      |..|+........                        .  ....+...|.++...++ + .|..|+.++-|.+|+..+++
T Consensus       195 l~~~~~~~~~~~~------------------------~--~~~~~~~~i~~i~~d~~-g-~lwigt~~~Gl~~~~~~~~~  246 (795)
T 4a2l_A          195 LYTYSITQKTFEK------------------------V--IPILGTKQIQAILQQSP-T-RIWVATEGAGLFLINPKTKE  246 (795)
T ss_dssp             EEEEETTTCCEEE------------------------C--C----CCCEEEEEEEET-T-EEEEEEBSSCEEEEETTTTE
T ss_pred             EEEEeCCCCeEEE------------------------e--cCCCCCCeeEEEEEcCC-C-CEEEEECCCCeEEEeCCCCe
Confidence            8888865321100                        0  00113456888887776 3 35556655559999988776


Q ss_pred             eeEEecc-------CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-------eecCCeEEEEeCCCCCC
Q 010769          301 CNLTLEH-------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAWDPHAEH  366 (502)
Q Consensus       301 ~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~v~~~p~~~~  366 (502)
                      .......       ....|.++...+++ . |..|+.. -|.+|+..+........       -....|.++...+++. 
T Consensus       247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-  322 (795)
T 4a2l_A          247 IKNYLHSPSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-  322 (795)
T ss_dssp             EEEECCCTTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-
T ss_pred             EEEeecCCCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-
Confidence            5432221       23579999998887 4 4455555 58889877554322110       1234689999988764 


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-------cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                       +.+|+.++-|..|+..+..          ...+.       .....|.++...+++  .|-.|+.++-|..|+..+++.
T Consensus       323 -lWigt~~~Gl~~~~~~~~~----------~~~~~~~~~~~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~~  389 (795)
T 4a2l_A          323 -MWLGTYFGGLNYYHPIRNR----------FKNIRNIPYKNSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQRF  389 (795)
T ss_dssp             -EEEEESSSCEEEECGGGGS----------SEEECCCTTSSSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCCE
T ss_pred             -EEEEECCCCeEEeCCCccc----------ceEEcCCCCCCCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCcE
Confidence             7788888889999876431          11111       124568899888866  355677777799999887763


Q ss_pred             eEEEEe------cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          440 SCIASR------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       440 ~~~~~~------~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      ......      ......|.++...+++. +|..|+.++.|.+|+..+++.
T Consensus       390 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~~  439 (795)
T 4a2l_A          390 TSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQV  439 (795)
T ss_dssp             EEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCCE
T ss_pred             EEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCcE
Confidence            222111      11235799999988887 355677777799999887653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.46  E-value=1.6e-06  Score=91.20  Aligned_cols=211  Identities=12%  Similarity=0.067  Sum_probs=128.6

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCC----CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAA----GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  342 (502)
                      ..+..|+|.+..+.++++-...+.|+.+++..    ......+.........|++.+.+.+++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            45678899987554555555668899999875    22222222222345678888665466666667789999998754


Q ss_pred             CCccceEeecCCeEEEEeCCCCCCEEEEEeCC-CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEE
Q 010769          343 THSGFKWAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       343 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~  421 (502)
                      ...............++++|.+..++++-... +.|..+++...         .....+...-...+.|+|+|.+..+++
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~---------~~~~l~~~~l~~PnGlavd~~~~~LY~  556 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------DIYSLVTENIQWPNGITLDLLSGRLYW  556 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC---------CCCEESCSSCSSCCCEEECTTTCCEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC---------CeeEEEeCCCCCccEEEEeccCCEEEE
Confidence            33221111224467888998766555544333 67887776532         111111122345678999998757777


Q ss_pred             EEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +-+..+.|.++++.......+............|++..+  +++++....+.|..++..+++.+..+
T Consensus       557 aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          557 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             EETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             EecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            777788899999976543333222222233445666554  46777777789999998877765544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.45  E-value=0.00015  Score=70.67  Aligned_cols=202  Identities=10%  Similarity=0.006  Sum_probs=126.6

Q ss_pred             CcceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccccee
Q 010769          192 FPLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  270 (502)
Q Consensus       192 ~~~~~~w~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  270 (502)
                      .|..++|       .+ ++.++.+-...+.|..++++.... .  .                        ..........
T Consensus       117 ~~~gl~~-------d~~~~~ly~~D~~~~~I~r~~~~g~~~-~--~------------------------~~~~~~~~p~  162 (386)
T 3v65_B          117 NAIALDF-------HHRRELVFWSDVTLDRILRANLNGSNV-E--E------------------------VVSTGLESPG  162 (386)
T ss_dssp             CEEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCCE-E--E------------------------EECSSCSCCC
T ss_pred             ccEEEEE-------ecCCCeEEEEeCCCCcEEEEecCCCCc-E--E------------------------EEeCCCCCcc
Confidence            3566776       44 455666666678898888864210 0  0                        0011123456


Q ss_pred             eEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC-CcEEEEeCCCCCCccceE
Q 010769          271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSGFKW  349 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~  349 (502)
                      .|++.+.+++++++-...+.|.+.++........+...-.....|++.|.+..++++-... +.|..+++..........
T Consensus       163 glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  242 (386)
T 3v65_B          163 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  242 (386)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence            7888876566777777778899998875443333443446788999999774656655555 788888876543322111


Q ss_pred             eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      ..-.....++|+|.+..++++-+..+.|..+++...         .....+........+|++.. + .++++-...+.|
T Consensus       243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~---------~~~~~~~~~~~~P~giav~~-~-~ly~td~~~~~V  311 (386)
T 3v65_B          243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS---------HRKAVISQGLPHPFAITVFE-D-SLYWTDWHTKSI  311 (386)
T ss_dssp             SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC---------SCEEEECSSCSSEEEEEEET-T-EEEEEETTTTEE
T ss_pred             CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC---------eeEEEEECCCCCceEEEEEC-C-EEEEeeCCCCeE
Confidence            223347889999877766666677888999998643         22222222344567788743 3 677777778889


Q ss_pred             EEEECCCCC
Q 010769          430 KLWDLSNNQ  438 (502)
Q Consensus       430 ~vwd~~~~~  438 (502)
                      ..++..+++
T Consensus       312 ~~~~~~~G~  320 (386)
T 3v65_B          312 NSANKFTGK  320 (386)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCCc
Confidence            999865554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.40  E-value=8e-05  Score=70.49  Aligned_cols=242  Identities=8%  Similarity=-0.003  Sum_probs=134.9

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeec------------------cccCCCcceeeeecCC
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH------------------IIIPAFPLCMAWLDCP  202 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~w~~~~  202 (502)
                      .-+.+++.|+++++.++...+     .|+.|+....   .+.....                  ......|.++.+    
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~-----~i~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~----   87 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDG-----RVIKYEGPNS---GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY----   87 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTS-----EEEEECCTTT---CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE----
T ss_pred             CceEEEEcCCCCEEEEEcCCC-----eEEEECCCCC---ceEEEecccccccccccccccchhccccCCCCceEEE----
Confidence            346788999999787777665     7888865543   2221110                  001123555554    


Q ss_pred             CCCCC-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCC-cccceeeEEecC-CCC
Q 010769          203 LKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNK-EFR  279 (502)
Q Consensus       203 ~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~-~~~  279 (502)
                         .+ +++++++.. .+.|.+++...... ..   +..                    ...+ .......+++.+ ++ 
T Consensus        88 ---~~~~g~l~v~d~-~~~i~~~d~~~g~~-~~---~~~--------------------~~~~~~~~~p~~i~~d~~~G-  138 (322)
T 2fp8_A           88 ---NLQNNQLYIVDC-YYHLSVVGSEGGHA-TQ---LAT--------------------SVDGVPFKWLYAVTVDQRTG-  138 (322)
T ss_dssp             ---ETTTTEEEEEET-TTEEEEECTTCEEC-EE---EES--------------------EETTEECSCEEEEEECTTTC-
T ss_pred             ---cCCCCcEEEEEC-CCCEEEEeCCCCEE-EE---ecc--------------------cCCCCcccccceEEEecCCC-
Confidence               45 565544433 34477777653210 00   000                    0001 123467899999 74 


Q ss_pred             cEEEEEec-----------------CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769          280 NILASASA-----------------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       280 ~~l~sgs~-----------------Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  342 (502)
                      ++.++-..                 .+.|..||..+++....... -.....|+|++++..++++-+..+.|.+|++...
T Consensus       139 ~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~  217 (322)
T 2fp8_A          139 IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP  217 (322)
T ss_dssp             CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred             EEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            45554322                 36788999877764332221 2345679999998335555566789999998753


Q ss_pred             CCc--cceEeecCCeEEEEeCCCCCCEEEEEeC----------CCeEEEEECCCCCCCCCCCCCCccEEEecCC----CC
Q 010769          343 THS--GFKWAVAADVESLAWDPHAEHSFVVSLE----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD----KA  406 (502)
Q Consensus       343 ~~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~----~~  406 (502)
                      ...  .......+ ...+++.+++. ++++...          .+.|..+|.. +         ..+..+....    ..
T Consensus       218 ~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~-G---------~~~~~~~~~~g~~~~~  285 (322)
T 2fp8_A          218 KKGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEF-G---------NILEVIPLPPPFAGEH  285 (322)
T ss_dssp             TTTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTT-S---------CEEEEEECCTTTTTSC
T ss_pred             cCCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCC-C---------CEEEEEECCCCCcccc
Confidence            221  11112233 77899999875 5554433          4668888764 2         3444444332    34


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       407 v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                      ++++++. .+ .++++....+.|.++++....
T Consensus       286 ~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          286 FEQIQEH-DG-LLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             CCEEEEE-TT-EEEEECSSCSEEEEEEC----
T ss_pred             ceEEEEe-CC-EEEEeecCCCceEEEeccccc
Confidence            6667663 33 666666677889999886544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.39  E-value=8.2e-05  Score=76.38  Aligned_cols=242  Identities=9%  Similarity=0.014  Sum_probs=135.7

Q ss_pred             CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      .+..|++++.++.|..+|..+++.+......+                ..  ........++    .. + + .++.++.
T Consensus       114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~----------------~~--~~~~~~~~P~----v~-~-g-~v~vg~~  168 (571)
T 2ad6_A          114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCD----------------PK--VGSTLTQAPF----VA-K-D-TVLMGCS  168 (571)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC----------------GG--GTCBCCSCCE----EE-T-T-EEEEECB
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEecCCC----------------CC--ccceeccCCE----EE-C-C-EEEEEec
Confidence            36678888889999999998765443211100                00  0000011111    11 2 3 5555654


Q ss_pred             ------CCcEEEEECCCCeeeEEeccCCCC-------------------------------------e-EEEEEcCCCCc
Q 010769          288 ------DKQVKIWDVAAGKCNLTLEHHTDK-------------------------------------V-QAVAWNHHSPQ  323 (502)
Q Consensus       288 ------Dg~v~vwd~~~~~~~~~~~~h~~~-------------------------------------v-~~l~~~~~~~~  323 (502)
                            ++.|..+|..+|+.+.++......                                     + ..+++.+.. .
T Consensus       169 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g  247 (571)
T 2ad6_A          169 GAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-N  247 (571)
T ss_dssp             CGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-T
T ss_pred             CCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-C
Confidence                  799999999999988776432110                                     0 124555655 4


Q ss_pred             EEEEEECC----------------CcEEEEeCCCCCCccceEeec---------CCeEEEEeCCCCC--CEEEEEeCCCe
Q 010769          324 ILLSGSFD----------------RSVVMKDARISTHSGFKWAVA---------ADVESLAWDPHAE--HSFVVSLEDGT  376 (502)
Q Consensus       324 ~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~~~---------~~v~~v~~~p~~~--~~l~~~~~dg~  376 (502)
                      .++.++.+                +.|..+|.++++..-......         ....-+...+++.  .+++.++.+|.
T Consensus       248 ~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~  327 (571)
T 2ad6_A          248 LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGI  327 (571)
T ss_dssp             EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSE
T ss_pred             eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcE
Confidence            55555432                358899998877542211110         0111112112332  35777889999


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCC-------------CCe--------------------------eEEEEcCCCC
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHD-------------KAV--------------------------CTISYNPLVP  417 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~sp~~~  417 (502)
                      ++++|..++         +.++......             .++                          ..++++|.. 
T Consensus       328 l~~lD~~tG---------~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-  397 (571)
T 2ad6_A          328 LYTLNRENG---------NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES-  397 (571)
T ss_dssp             EEEEETTTC---------CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-
T ss_pred             EEEEECCCC---------CEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC-
Confidence            999999887         3333332111             111                          246778776 


Q ss_pred             CEEEEEe-------------------------------------CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          418 NLLATGS-------------------------------------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       418 ~~l~t~s-------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      .+|++.+                                     .+|.|..||+.+++..-.....   ..+.+..+...
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~  474 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTK  474 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEET
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC---CCccceeEEEC
Confidence            4555443                                     3578999999998843222222   12222222223


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          461 SPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       461 ~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +. ++.+++.+|.|+.||..+++.+.+..
T Consensus       475 gg-~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          475 GG-LVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CC-EEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            44 46668899999999999999886543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.38  E-value=0.00024  Score=75.56  Aligned_cols=254  Identities=7%  Similarity=-0.016  Sum_probs=132.9

Q ss_pred             cccccccc-CCCceEEEEEecCCcceeEEEEEecCCC-CCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769          141 DLEDMTIN-PNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       141 ~v~~~~~~-p~~~~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d  218 (502)
                      .+....|+ |+|++||.+..........||+++...+ .  .+..           .+.+....+.|+|+|+.|+....+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~--~l~~-----------~~~~~~~~~~WspDg~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ--TIAD-----------KVSGTNGEIVWGPDHTSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC--CCCC-----------CEEEECSCCEECSSTTEEEEEEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE--eCCc-----------cccCceeeEEEecCCCEEEEEEEC
Confidence            56778999 9999999887643222346777776543 2  1100           111112233348999888877665


Q ss_pred             -----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec--CCcE
Q 010769          219 -----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQV  291 (502)
Q Consensus       219 -----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--Dg~v  291 (502)
                           ..|.++++.+......                       .... ..+......+.|+|+++.++++...  ...|
T Consensus       242 ~~~~~~~v~~~~lgt~~~~~~-----------------------lv~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l  297 (751)
T 2xe4_A          242 ETLRENKVWRHVMGKLQSEDV-----------------------CLYE-EHNPLFSAFMYKAADTNTLCIGSQSPETAEV  297 (751)
T ss_dssp             TTCCEEEEEEEETTSCGGGCE-----------------------EEEE-CCCTTCEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred             CCCCCCEEEEEECCCCchhcE-----------------------EEEe-cCCCceEEEEEECCCCCEEEEEecCCCCceE
Confidence                 2566777654221100                       0000 0122345678999996644444432  3468


Q ss_pred             EEEECCCC--ee-eEEe-ccCCCCeEEEEEcCCCCcEEEEEECC----CcEEEEeCCCCCCccc-eEeecC--CeEEEEe
Q 010769          292 KIWDVAAG--KC-NLTL-EHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARISTHSGF-KWAVAA--DVESLAW  360 (502)
Q Consensus       292 ~vwd~~~~--~~-~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~-~~~~~~--~v~~v~~  360 (502)
                      .++|+.++  .. +..+ ........++.|+..+ .+++.+..+    ..|..+++.++..... ...+..  .+..+.+
T Consensus       298 ~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~  376 (751)
T 2xe4_A          298 HLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV  376 (751)
T ss_dssp             EEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE
T ss_pred             EEEECCCCCCCceeEEeecCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE
Confidence            88898875  23 1333 3344566677765544 566665554    3566677654322222 233333  3455555


Q ss_pred             CCCCCCEEEEEeCCCe--EEEEECC------CCCCCCCCCCCCccEEEecCC-CCeeEEEE----cCCCCCEEEEEeCC-
Q 010769          361 DPHAEHSFVVSLEDGT--IKGFDIR------TAKSDPDSTSQQSSFTLHAHD-KAVCTISY----NPLVPNLLATGSTD-  426 (502)
Q Consensus       361 ~p~~~~~l~~~~~dg~--i~i~d~~------~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~----sp~~~~~l~t~s~d-  426 (502)
                      .  +..++++...+|.  |.++++.      ..        ......+.... ..+..+.+    ++++..++++.+.. 
T Consensus       377 ~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~--------g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~  446 (751)
T 2xe4_A          377 R--SNYLVVAGRRAGLTRIWTMMADSQDGVFKA--------GTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLA  446 (751)
T ss_dssp             C--SSEEEEEEEETTEEEEEEEECCTTTSCCCT--------TTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETT
T ss_pred             E--CCEEEEEEEeCCEEEEEEEecccccccccC--------CccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCC
Confidence            4  4557777778886  4555641      11        11022222111 12333332    34554566665543 


Q ss_pred             --CcEEEEECCCCCeeEE
Q 010769          427 --KMVKLWDLSNNQPSCI  442 (502)
Q Consensus       427 --g~i~vwd~~~~~~~~~  442 (502)
                        ..+..+|+.+++...+
T Consensus       447 ~P~~~~~~d~~~~~~~~l  464 (751)
T 2xe4_A          447 TPNTWFDVSPQDHSRTAV  464 (751)
T ss_dssp             EEEEEEEECTTTCCEEEE
T ss_pred             CCCEEEEEECCCCcEEEE
Confidence              3577788877664333

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.34  E-value=9.2e-05  Score=76.10  Aligned_cols=59  Identities=12%  Similarity=0.059  Sum_probs=37.3

Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .|.|..||+.+++.  +...... .++.+-.....+. ++..++.||.|+.||..+++.+-+.
T Consensus       452 ~G~l~A~D~~tG~~--~W~~~~~-~~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          452 LGQIKAYNAITGDY--KWEKMER-FAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKF  510 (599)
T ss_dssp             CEEEEEECTTTCCE--EEEEEES-SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCeEEEEECCCCCE--EeEecCC-CCccCcceEecCC-EEEEECCCCeEEEEECCCCCEEEEe
Confidence            47788999998874  3332211 1111111122344 5666899999999999999988654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.33  E-value=6.9e-05  Score=78.54  Aligned_cols=161  Identities=10%  Similarity=0.130  Sum_probs=102.9

Q ss_pred             cceeeEEecCCCCcEEEEEecCC-------------------cEEEEECCCCeeeEEecc--CC-------CCeEEEEEc
Q 010769          267 DSVLGLAWNKEFRNILASASADK-------------------QVKIWDVAAGKCNLTLEH--HT-------DKVQAVAWN  318 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg-------------------~v~vwd~~~~~~~~~~~~--h~-------~~v~~l~~~  318 (502)
                      .....+++.|. ..+++.++.++                   .|..+|+.+|+.+..++.  |.       .+.....+.
T Consensus       230 ~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~  308 (668)
T 1kv9_A          230 TVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN  308 (668)
T ss_dssp             CCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred             ccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec
Confidence            33456788887 45777887665                   499999999999888753  22       223222333


Q ss_pred             CCCC--cEEEEEECCCcEEEEeCCCCCCccceE--------eec----CC------------------------eEEEEe
Q 010769          319 HHSP--QILLSGSFDRSVVMKDARISTHSGFKW--------AVA----AD------------------------VESLAW  360 (502)
Q Consensus       319 ~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~--------~~~----~~------------------------v~~v~~  360 (502)
                      .++.  ..++.++.+|.++++|..+++.+....        ...    .+                        -..+++
T Consensus       309 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~  388 (668)
T 1kv9_A          309 IDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSF  388 (668)
T ss_dssp             ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceE
Confidence            3441  268889999999999999887542110        000    00                        012566


Q ss_pred             CCCCCCEEEEEe------------------------------------CCCeEEEEECCCCCCCCCCCCCCccEEEecCC
Q 010769          361 DPHAEHSFVVSL------------------------------------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD  404 (502)
Q Consensus       361 ~p~~~~~l~~~~------------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~  404 (502)
                      +|... ++++..                                    .+|.|..||+.++         +.+++...+.
T Consensus       389 dp~~g-~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG---------~~~W~~~~~~  458 (668)
T 1kv9_A          389 NPGTG-LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ---------KAAWKVPYPT  458 (668)
T ss_dssp             ETTTT-EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT---------EEEEEEEESS
T ss_pred             CCCCC-EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC---------cEEEEccCCC
Confidence            66544 344311                                    2378999999887         6677766443


Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769          405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                       +.....+...+ .++++++.|+.|++||..+++..
T Consensus       459 -~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          459 -HWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             -SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred             -CCcCceeEeCC-CEEEEECCcccchhhhhhcChhh
Confidence             23333334444 78888999999999999999843

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.31  E-value=0.00032  Score=66.20  Aligned_cols=181  Identities=11%  Similarity=0.009  Sum_probs=118.1

Q ss_pred             CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC---CCccceEe-ecCCeEEEEeCCCC
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---THSGFKWA-VAADVESLAWDPHA  364 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~-~~~~v~~v~~~p~~  364 (502)
                      ..|+..++.+.+....+. ....+..++|++.+..++++-...+.|..+++...   ........ .......+++++.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            569999998876655554 34568899999877466666667789999998762   11111121 12346788888766


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCC-CcEEEEECCCCCeeEEE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD-KMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d-g~i~vwd~~~~~~~~~~  443 (502)
                      .+++++-...+.|.++++...         .....+.........+++.|.++.++++.... +.|..+++.......+ 
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~---------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~-  158 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-  158 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-
T ss_pred             CeEEEEECCCCEEEEEeCCCC---------ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE-
Confidence            656666677889999998643         22222222335678999999764555554433 6888888865442222 


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                       ..........++++|++..++.+-...+.|..+++..
T Consensus       159 -~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          159 -VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             -ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence             1223456889999998776677666778999999864

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.26  E-value=1.8e-05  Score=71.35  Aligned_cols=169  Identities=8%  Similarity=0.012  Sum_probs=111.6

Q ss_pred             eeeEEeccCCC--CeEEEEEcCCCCcEEEEEECCC--cEEEEeCCCCCCccceEeecCCeE--EEEeCCCCCCEEEEEeC
Q 010769          300 KCNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADVE--SLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       300 ~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~--~v~~~p~~~~~l~~~~~  373 (502)
                      +.+.++. |..  ..+.|.|+ ++ .++.+.+.+|  .|+++|+.+++.... ........  .++..  +..++++...
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~-~~l~~~~FgeGit~~--g~~ly~ltw~  105 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQ-IELGKRYFGEGISDW--KDKIVGLTWK  105 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEE-EECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred             EEEEEec-CCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEE-EecCCccceeEEEEe--CCEEEEEEee
Confidence            3456664 443  34889998 55 7777887766  899999999887653 33344433  34443  4556666667


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC---CC
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK---AG  450 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~---~~  450 (502)
                      ++.+.+||..+.         +.+.++.... .-..++  +++ ..|+.+..++.|.++|..+.+..........   ..
T Consensus       106 ~~~v~v~D~~t~---------~~~~ti~~~~-eG~glt--~dg-~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~  172 (262)
T 3nol_A          106 NGLGFVWNIRNL---------RQVRSFNYDG-EGWGLT--HND-QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELP  172 (262)
T ss_dssp             SSEEEEEETTTC---------CEEEEEECSS-CCCCEE--ECS-SCEEECCSSSEEEEECTTTCSEEEEEECEETTEECC
T ss_pred             CCEEEEEECccC---------cEEEEEECCC-CceEEe--cCC-CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccc
Confidence            999999999987         6666666432 223444  455 4444444578899999998875333333211   13


Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       451 ~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .++.+.|. +|. +++..-.+..|.+.|..+++.+..+-
T Consensus       173 ~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id  209 (262)
T 3nol_A          173 ELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIID  209 (262)
T ss_dssp             CEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred             ccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEE
Confidence            45667786 665 67766678899999999999876654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.26  E-value=3e-05  Score=69.83  Aligned_cols=168  Identities=8%  Similarity=0.009  Sum_probs=115.5

Q ss_pred             eeeEEeccCC--CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeE--EEEeCCCCCCEEEEEeCCC
Q 010769          300 KCNLTLEHHT--DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVE--SLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       300 ~~~~~~~~h~--~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~--~v~~~p~~~~~l~~~~~dg  375 (502)
                      +.+.++. |.  ...+.|.|+. + .++++.+.+|.|+++|+.+++.....  ......  .+++.  +..++++...++
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~  116 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSC
T ss_pred             EEEEEEc-CCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCC
Confidence            4455563 44  3457889874 3 78888889999999999999887654  444443  35554  455777777899


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC---CCCE
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK---AGAV  452 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~---~~~v  452 (502)
                      .+.+||..+.         +.+.++... ..-..++  +++ ..|+.+..++.|.++|..+.+.........+   ...+
T Consensus       117 ~v~V~D~~Tl---------~~~~ti~~~-~eGwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l  183 (268)
T 3nok_A          117 LLFTWSGMPP---------QRERTTRYS-GEGWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI  183 (268)
T ss_dssp             EEEEEETTTT---------EEEEEEECS-SCCCCEE--EET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EEEEEECCcC---------cEEEEEeCC-CceeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence            9999999987         666666643 2234555  445 5555555688999999999875433333222   2345


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       453 ~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +.+.|. +|. +++..-....|.+.|..+++.+..+-
T Consensus       184 NeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          184 NELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             EEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred             cccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEE
Confidence            677887 665 67666567899999999999876543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=0.00075  Score=72.23  Aligned_cols=198  Identities=9%  Similarity=0.044  Sum_probs=123.6

Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe---ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  342 (502)
                      ...|.++...+++  .|..|+.++-|.+|+..+++.....   ......|.++...+++ . |..|+.++.|..++.++.
T Consensus       362 ~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~  437 (781)
T 3v9f_A          362 NKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG-N-LWFGTYLGNISYYNTRLK  437 (781)
T ss_dssp             SSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS-C-EEEEETTEEEEEECSSSC
T ss_pred             CcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC-C-EEEEeccCCEEEEcCCCC
Confidence            3568999888773  3556776677999998765432211   1234678999888777 4 555777777899988765


Q ss_pred             CCccceE--eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-----CCCCeeEEEEcCC
Q 010769          343 THSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-----HDKAVCTISYNPL  415 (502)
Q Consensus       343 ~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp~  415 (502)
                      +......  .....|.++...+++  .+.+|+. +-|..|+..+..         .......     ....|.++...++
T Consensus       438 ~~~~~~~~~~~~~~v~~i~~d~~g--~lwigt~-~Gl~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~i~~d~~  505 (781)
T 3v9f_A          438 KFQIIELEKNELLDVRVFYEDKNK--KIWIGTH-AGVFVIDLASKK---------VIHHYDTSNSQLLENFVRSIAQDSE  505 (781)
T ss_dssp             EEEECCSTTTCCCCEEEEEECTTS--EEEEEET-TEEEEEESSSSS---------CCEEECTTTSSCSCSCEEEEEECTT
T ss_pred             cEEEeccCCCCCCeEEEEEECCCC--CEEEEEC-CceEEEeCCCCe---------EEecccCcccccccceeEEEEEcCC
Confidence            4322111  123568888888755  4666776 568889987652         1111111     1357889988887


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEEec-CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRN-PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      + . |..|+..+-|..|+..+.+........ .....|.++...++|. +. .|+..|.|..||..+++
T Consensus       506 g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lW-i~T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          506 G-R-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQ-MW-LATGEGLVCFPSARNFD  570 (781)
T ss_dssp             C-C-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSC-EE-EEETTEEEEESCTTTCC
T ss_pred             C-C-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCC-EE-EEECCCceEEECCCCCc
Confidence            6 4 444555444888988776522211111 1235689999999997 33 34556654888887654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.26  E-value=2.1e-05  Score=82.49  Aligned_cols=203  Identities=11%  Similarity=0.170  Sum_probs=109.1

Q ss_pred             ceeeEEecCCCCcEEEEEe-cCCcEEEEECCCCeeeEEeccCCC-CeEEEEEcCCCCcEEEEEE-CC-----CcEEEEeC
Q 010769          268 SVLGLAWNKEFRNILASAS-ADKQVKIWDVAAGKCNLTLEHHTD-KVQAVAWNHHSPQILLSGS-FD-----RSVVMKDA  339 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs-~Dg~v~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~-~d-----g~i~vwd~  339 (502)
                      ...++++..+ +.+++.|+ .+..+.+||+.+++....-..+.. .-.+++..+++ ++++.|+ .+     ..+.+||.
T Consensus       244 ~~~~~~~~~~-g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          244 FCPGISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             SSCEEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEET
T ss_pred             ccccccCCCC-CCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCC
Confidence            3445667777 45788887 456899999987754432221221 22345566677 7888888 44     56899998


Q ss_pred             CCCCCccce----EeecCCeEEEEeCCCCCCEEEEEeCCC---------eEEEEECCCCCCCCCCCCCCccEEEecC---
Q 010769          340 RISTHSGFK----WAVAADVESLAWDPHAEHSFVVSLEDG---------TIKGFDIRTAKSDPDSTSQQSSFTLHAH---  403 (502)
Q Consensus       340 ~~~~~~~~~----~~~~~~v~~v~~~p~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~h---  403 (502)
                      .+..-....    ......-....+..+ ..+++.|+.+|         .+..||..+.         ........+   
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~-~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~---------~w~~~~~~~~~~  391 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTADKQGLYRSD-NHAWLFGWKKGSVFQAGPSTAMNWYYTSGS---------GDVKSAGKRQSN  391 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTGGGTTT-CSCCEEECGGGCEEECCSSSEEEEEECSTT---------CEEEEEEECEET
T ss_pred             CCCcceeCCCccccccccccccceeecC-CceEEEECCCCcEEEecCccceeeeecCCc---------ceeecCCccccc
Confidence            764311100    000000000112222 23455555444         4677887764         111111111   


Q ss_pred             ------CCCeeEEEEcCCCCCEEEEEeCCC-----------cEEEEECCCCCeeEEEEecCCCCC-EEEEEEcCCCCcEE
Q 010769          404 ------DKAVCTISYNPLVPNLLATGSTDK-----------MVKLWDLSNNQPSCIASRNPKAGA-VFSVAFSEDSPFVL  465 (502)
Q Consensus       404 ------~~~v~~l~~sp~~~~~l~t~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~-v~~~~~spd~~~ll  465 (502)
                            ...-.++.|...+.++++.|+.++           .|.+||..+.....+..-..+... -.++...|++. ++
T Consensus       392 ~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~-i~  470 (656)
T 1k3i_A          392 RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-TF  470 (656)
T ss_dssp             TEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC-EE
T ss_pred             cccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC-EE
Confidence                  112244444443447888887542           578888887764333200112222 23456778888 68


Q ss_pred             EEEeCC-----------CcEEEEECCCCc
Q 010769          466 AIGGSK-----------GKLEIWDTLSDA  483 (502)
Q Consensus       466 asg~~d-----------g~i~vwd~~~~~  483 (502)
                      +.||.+           ..+.+||..+++
T Consensus       471 v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          471 ITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             EECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             EECCcccCcCcCCCCcccceEEEcCCCCc
Confidence            888754           468999987654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.24  E-value=0.00048  Score=70.73  Aligned_cols=60  Identities=8%  Similarity=0.088  Sum_probs=38.4

Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      +|.|..||+.+++..-......   ++..-.....+. +++.|+.||.|+.||..+++.+-+.-
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL---PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS---CCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCC---CCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEec
Confidence            5789999999988432222211   111111112244 57779999999999999999886543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.24  E-value=0.00032  Score=65.81  Aligned_cols=226  Identities=8%  Similarity=0.059  Sum_probs=124.4

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC-
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP-  219 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg-  219 (502)
                      ..+.+++.|+++++++....+     +|+.++....    +...  ...+..|.++.+       .++|+++++..... 
T Consensus        33 ~pegia~~~~g~lyv~d~~~~-----~I~~~d~~g~----~~~~--~~~~~~p~gia~-------~~dG~l~vad~~~~~   94 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVG-----EIVSITPDGN----QQIH--ATVEGKVSGLAF-------TSNGDLVATGWNADS   94 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTT-----EEEEECTTCC----EEEE--EECSSEEEEEEE-------CTTSCEEEEEECTTS
T ss_pred             CcceEEECCCCCEEEEeCCCC-----eEEEECCCCc----eEEE--EeCCCCceeEEE-------cCCCcEEEEeccCCc
Confidence            456789999998777765554     7888875542    1111  123345566655       67888766654332 


Q ss_pred             -cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769          220 -AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       220 -~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~  298 (502)
                       .|..++...+.. ....                        .. ........++..+. ...+++-+..+.|.++|..+
T Consensus        95 ~~v~~~d~~~g~~-~~~~------------------------~~-~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A           95 IPVVSLVKSDGTV-ETLL------------------------TL-PDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             CEEEEEECTTSCE-EEEE------------------------EC-TTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEcCCCCeE-EEEE------------------------eC-CCccccCcccccCC-CcEEEEECCCCeEEEEeCCC
Confidence             355555443221 1000                        00 01112233444444 44555555688999999876


Q ss_pred             Cee-eEEec---------cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-CCCc-cceEeecCCeEEEEeCCCCCC
Q 010769          299 GKC-NLTLE---------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHS-GFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       299 ~~~-~~~~~---------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~v~~~p~~~~  366 (502)
                      ++. +....         ..-.....|  ++++..++++-...+.|..|++.. +... ...+........+++++++. 
T Consensus       148 ~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~-  224 (306)
T 2p4o_A          148 PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-  224 (306)
T ss_dssp             TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-
T ss_pred             CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCC-
Confidence            532 21110         111234555  677745666666788999999875 2211 11122223466788898874 


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCCCCCCCCc--cEEEecCCCCeeEEEEc---CCCCCEEEEEe
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQS--SFTLHAHDKAVCTISYN---PLVPNLLATGS  424 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~s---p~~~~~l~t~s  424 (502)
                      ++++....+.|.+++.. +         ..  +..+...-...++++|.   |++..++++.+
T Consensus       225 l~va~~~~~~V~~~~~~-G---------~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          225 LYGATHIYNSVVRIAPD-R---------STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEEECBTTCCEEEECTT-C---------CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEEEeCCCCeEEEECCC-C---------CEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            66666667889999865 2         22  11223333568899998   77634444443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=0.0037  Score=66.85  Aligned_cols=204  Identities=11%  Similarity=0.060  Sum_probs=123.9

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEec-------cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeC
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  339 (502)
                      ..|.++...++ + .|..|+..+-|..|+..+++......       .....|.++...+++ . |..|+.. -|.+||.
T Consensus       163 ~~i~~i~~d~~-g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lwigt~~-Gl~~~d~  237 (781)
T 3v9f_A          163 EQTWTATEAED-G-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG-N-IWIGTSK-GLALFNA  237 (781)
T ss_dssp             CCEEEEEEEET-T-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTC-C-EEEEETT-EEEEEET
T ss_pred             cceEEEEECCC-C-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCC-C-EEEEeCC-cHheECC
Confidence            45888887766 3 45556766569999988775432211       113568899888877 4 4445555 6888998


Q ss_pred             CCCCCccceE-------eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE-------EecCCC
Q 010769          340 RISTHSGFKW-------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-------LHAHDK  405 (502)
Q Consensus       340 ~~~~~~~~~~-------~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~~h~~  405 (502)
                      .+........       .....|.++...+++  .+.+|+..+-|.+++..+.......  ......       ......
T Consensus       238 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~l~~~  313 (781)
T 3v9f_A          238 NTETFTNFHNNPGNIHGALSSYIFSIKQLKDN--KLWIATELNGIMILDLQQNQFLLPE--QIRFEFIREGDNNYSLSNA  313 (781)
T ss_dssp             TTTEEEC-----------CCCCEEEEEECTTS--EEEEEESSSCEEEEETTCC-----------CEEECBCSSTTSBSSS
T ss_pred             CCCcEEEEEcCCCccccccCceEEEEEECCCC--CEEEEeCCCCeEEECCCCCeeeeee--ccccccccCCCCCCCCCCC
Confidence            7654332111       123568888888755  5777887667888998765210000  000000       012345


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-------ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-------RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-------~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      .|.++...+++  .|-.|+.++-|..|+...........       .......|.++...+++.  |-.|+.++.|..|+
T Consensus       314 ~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~  389 (781)
T 3v9f_A          314 SARYIFQDSFN--NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFE  389 (781)
T ss_dssp             CEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEE
T ss_pred             eEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEE
Confidence            78899888876  35566666779999987665322211       011235699999999887  44566566789999


Q ss_pred             CCCCc
Q 010769          479 TLSDA  483 (502)
Q Consensus       479 ~~~~~  483 (502)
                      ..++.
T Consensus       390 ~~~~~  394 (781)
T 3v9f_A          390 NGKRV  394 (781)
T ss_dssp             TTEEE
T ss_pred             CCCCe
Confidence            86543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=0.00031  Score=69.39  Aligned_cols=205  Identities=7%  Similarity=0.097  Sum_probs=114.0

Q ss_pred             ccceeeEEecCCCCcEEEEEecCC----cEEEEECCCCeee--EEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeC
Q 010769          266 TDSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA  339 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg----~v~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  339 (502)
                      ......|+|++++..++++....+    .+.+.+. .+...  ..+. .......++++|.+..++++-...+.|..++.
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            355789999999543444444222    2333442 33221  2222 12345678899944377777777889999998


Q ss_pred             CCCCCccceEee--cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC--------------
Q 010769          340 RISTHSGFKWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--------------  403 (502)
Q Consensus       340 ~~~~~~~~~~~~--~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h--------------  403 (502)
                      ....... ....  ......++|+|++..++++-...+.|..++.......     ......+.+.              
T Consensus       256 ~~~~~~~-~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~-----~~~~~~~ag~~g~~g~~dg~~~~a  329 (430)
T 3tc9_A          256 TTQETTP-LFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKR-----LTTPYIVCGQQGAKDWVDGVGKKA  329 (430)
T ss_dssp             TTTEEEE-EEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-----ECCCEEEEECTTCBCCBCEEGGGC
T ss_pred             CCCcEEE-EEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccc-----ccceEEEeccCCCCCCCCCCCcce
Confidence            7654321 1222  2347889999998756666677889999886532000     0001111111              


Q ss_pred             -CCCee-EEEEc--------CCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe-----cC----------CCCCEEEEEEc
Q 010769          404 -DKAVC-TISYN--------PLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-----NP----------KAGAVFSVAFS  458 (502)
Q Consensus       404 -~~~v~-~l~~s--------p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~-----~~----------~~~~v~~~~~s  458 (502)
                       -.... .++..        +.+ .++++-...+.|+.++. .+....+...     .+          .-.....++++
T Consensus       330 ~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd  407 (430)
T 3tc9_A          330 RMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYD  407 (430)
T ss_dssp             BBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEE
T ss_pred             EeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEE
Confidence             01122 44443        223 45555555677888883 4443222221     00          01257889999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECC
Q 010769          459 EDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       459 pd~~~llasg~~dg~i~vwd~~  480 (502)
                      |++..|+++-..+.+|+.+++.
T Consensus       408 ~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          408 EERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCEEEEEECCCCeEEEEccC
Confidence            9544467766667788887753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.16  E-value=0.0025  Score=66.01  Aligned_cols=207  Identities=11%  Similarity=0.060  Sum_probs=137.1

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      ..+..|+|.+..+.++.+-...+.|..+++........+.........|++.+.+.+++++-...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            45789999998666666667788999999876544333433334577888887765677777778899999987544322


Q ss_pred             ceEeecCCeEEEEeCCCCCCEEEEE-eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769          347 FKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      .....-.....++++|....++++- +..+.|...++...          ....+...-.....|++.+.+.++.++-..
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~----------~~~~l~~~~~~P~GlalD~~~~~LY~aD~~  186 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS----------ERTTLVPNVGRANGLTIDYAKRRLYWTDLD  186 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----------SCEEEECSCSSEEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC----------ceEEEECCCCCcceEEEccccCEEEEEECC
Confidence            2212334578999998666444443 23567888877643          222333345567899999977466666667


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .+.|..+++.......+..   .......+++..+  +++.+-...+.|...|..+++....+
T Consensus       187 ~~~I~~~d~dG~~~~v~~~---~l~~P~glav~~~--~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          187 TNLIESSNMLGLNREVIAD---DLPHPFGLTQYQD--YIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             TTEEEEEETTSCSCEEEEE---CCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCEEEEEcCCCCceEEeec---cCCCceEEEEECC--EEEEecCCCCEEEEEECCCCCceEEE
Confidence            7889999997765422222   2334668888653  46777666789999998777654433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.12  E-value=8.8e-05  Score=78.96  Aligned_cols=197  Identities=9%  Similarity=0.054  Sum_probs=110.2

Q ss_pred             ceeeEEec-CCCCcEEEEEecCC----cEEEEECCCC-eeeE-EeccCCCCeEEEEEcCCCCcEEEEEECC-----CcEE
Q 010769          268 SVLGLAWN-KEFRNILASASADK----QVKIWDVAAG-KCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVV  335 (502)
Q Consensus       268 ~V~~l~~~-~~~~~~l~sgs~Dg----~v~vwd~~~~-~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~  335 (502)
                      .+...+|+ |+|..++++.+.+|    +|+++|+.++ +.+. .+.   .....+.|+|++ +.|+....+     ..|.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg-~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDH-TSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSST-TEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCC-CEEEEEEECCCCCCCEEE
Confidence            67889999 99654444544444    4999999998 6321 111   123468899999 444444443     2577


Q ss_pred             EEeCCCCCCcc-ceEe--ecCCeEEEEeCCCCCCEEEEEeC--CCeEEEEECCCCCCCCCCCCCCc-cEEEe-cCCCCee
Q 010769          336 MKDARISTHSG-FKWA--VAADVESLAWDPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQS-SFTLH-AHDKAVC  408 (502)
Q Consensus       336 vwd~~~~~~~~-~~~~--~~~~v~~v~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~-~~~~~-~h~~~v~  408 (502)
                      ++++.++.... ..+.  .......+.|+|++..++++...  ...|+++|+.++..       .. +..+. .......
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-------~~~~~~l~~~~~~~~~  323 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-------HNTLEIVRPREKGVRY  323 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-------CCCEEESSCCCTTCCE
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-------CceeEEeecCCCCceE
Confidence            88887654321 1221  22346678999998855555533  34688888876410       11 02222 2334555


Q ss_pred             EEEEcCCCCCEEEEEeCC----CcEEEEECCC-CCeeE-EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc--EEEEEC
Q 010769          409 TISYNPLVPNLLATGSTD----KMVKLWDLSN-NQPSC-IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDT  479 (502)
Q Consensus       409 ~l~~sp~~~~~l~t~s~d----g~i~vwd~~~-~~~~~-~~~~~~~~~~v~~~~~spd~~~llasg~~dg~--i~vwd~  479 (502)
                      ++.|+. +..+++....+    ..|..+++.+ ..... +.... ....+..+.+.  +.+++++...+|.  |.++++
T Consensus       324 s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          324 DVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence            565554 43555554443    3567777764 22112 22211 11134555554  5567888888885  555564

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.11  E-value=0.0014  Score=67.18  Aligned_cols=164  Identities=15%  Similarity=0.109  Sum_probs=96.0

Q ss_pred             cEEEEECCCCeeeEEecc--C--------CCCeEEEEEcCCCC--cEEEEEECCCcEEEEeCCCCCCccceEeecC----
Q 010769          290 QVKIWDVAAGKCNLTLEH--H--------TDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVAA----  353 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~--h--------~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----  353 (502)
                      .|..+|..+|+.+..++.  |        ..++. +....+|.  .+++.++.+|.+.++|..+++.+... ....    
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~-~~~~~~~w  350 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE-KVDPAVNV  350 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE-ESSTTCCS
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee-cccCCccc
Confidence            699999999998887753  2        12222 22223452  35777888999999999887653211 1100    


Q ss_pred             ----------Ce--------------------------EEEEeCCCCCCEEEEEe-------------------------
Q 010769          354 ----------DV--------------------------ESLAWDPHAEHSFVVSL-------------------------  372 (502)
Q Consensus       354 ----------~v--------------------------~~v~~~p~~~~~l~~~~-------------------------  372 (502)
                                ++                          ..++++|... ++++..                         
T Consensus       351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  429 (571)
T 2ad6_A          351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC-EEEEEchhccccccccccccccCCccccccc
Confidence                      01                          2356677655 454442                         


Q ss_pred             ------------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769          373 ------------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       373 ------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                                  ..|.|..||+.++         +.+++..... .+.+..+...+ .+++.++.|+.|+.||.++++. 
T Consensus       430 ~~~~~~~~~~~~~~g~l~a~D~~tG---------~~~W~~~~~~-~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~-  497 (571)
T 2ad6_A          430 AMYPGPNGPTKKEMGQIRAFDLTTG---------KAKWTKWEKF-AAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKE-  497 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTC---------CEEEEEEESS-CCCSBCEEETT-TEEEEECTTSEEEEEETTTCCE-
T ss_pred             eeccCccccCCCCCCeEEEEECCCC---------CEEEEecCCC-CccceeEEECC-CEEEEEcCCCeEEEEECCCCCE-
Confidence                        3478999999887         5666665332 22222222234 6777799999999999999984 


Q ss_pred             EEEEecCCCC-CEEEEEEcCCCCcEEEEEe
Q 010769          441 CIASRNPKAG-AVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       441 ~~~~~~~~~~-~v~~~~~spd~~~llasg~  469 (502)
                       +..+..... .-..+.+..++...+++.+
T Consensus       498 -lw~~~~~~~~~~~p~~~~~~G~~yv~~~~  526 (571)
T 2ad6_A          498 -LWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             -EEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             -EEEEeCCCCcEeeeEEEEECCEEEEEEEC
Confidence             333332211 1112335567764344433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.08  E-value=0.0031  Score=59.36  Aligned_cols=203  Identities=11%  Similarity=-0.013  Sum_probs=125.4

Q ss_pred             cceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee
Q 010769          193 PLCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      +..++|       .+ ++.++.+-...+.|..++++........                          ....-.....
T Consensus        37 ~~~ld~-------d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~--------------------------~~~~l~~p~g   83 (318)
T 3sov_A           37 AAAVDF-------VFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--------------------------VVSGLLSPDG   83 (318)
T ss_dssp             EEEEEE-------EGGGTEEEEEETTTTEEEEEETTSSSCCCEE--------------------------EEECCSCCCE
T ss_pred             cEEEEE-------EeCCCEEEEEECCCCcEEEEEccCCCceEEE--------------------------EcCCCCCccE
Confidence            356677       33 4566666666788988888643211100                          0011234667


Q ss_pred             EEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEeCCCCCCccceEe
Q 010769          272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       272 l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~  350 (502)
                      |++.+.+++++++-...+.|.++++........+.........+++.|.++.++++-. ..+.|..+++...........
T Consensus        84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  163 (318)
T 3sov_A           84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS  163 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence            8888765667777777789999998754333333344556789999987635444442 357888888764332221111


Q ss_pred             ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      .-.....++|+|.+..++++-+..+.|..+++...         ..............++++..  ..++.+-...+.|.
T Consensus       164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~---------~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~  232 (318)
T 3sov_A          164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT---------NRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSIL  232 (318)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEE
T ss_pred             CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC---------ceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEE
Confidence            22346889999977766666677889999998643         11111222334556777753  36677766778899


Q ss_pred             EEECCCCCe
Q 010769          431 LWDLSNNQP  439 (502)
Q Consensus       431 vwd~~~~~~  439 (502)
                      .++..+++.
T Consensus       233 ~~~~~~G~~  241 (318)
T 3sov_A          233 ACNKYTGEG  241 (318)
T ss_dssp             EEETTTCCS
T ss_pred             EEECCCCCc
Confidence            999876653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.07  E-value=0.0016  Score=63.52  Aligned_cols=189  Identities=11%  Similarity=0.004  Sum_probs=121.8

Q ss_pred             EEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC---CccceEe-ecCCeE
Q 010769          281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST---HSGFKWA-VAADVE  356 (502)
Q Consensus       281 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~-~~~~v~  356 (502)
                      +|+.+. ...|+..++........+. ....+..|+|++.+..++++-...+.|+.+++....   ....... ......
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444433 4689999988765544443 456788999998774666666677889999886532   1111111 234567


Q ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEECC
Q 010769          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLS  435 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~vwd~~  435 (502)
                      .+++.+.+.+++++-...+.|.+.++...         .....+...-.....|++.|.++.++.+-.. .+.|...++.
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~---------~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTC---------SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCC---------ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence            88888766667777777889999988754         2222233334457899999976355555433 4789999987


Q ss_pred             CCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          436 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       436 ~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      ......+  ..........|++++++..|+.+-...+.|..+++...
T Consensus       234 G~~~~~~--~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          234 GVDIYSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             SCSCEEE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCccEEE--EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            6553222  22334568899999887766666566778999998643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.07  E-value=0.0011  Score=65.55  Aligned_cols=205  Identities=8%  Similarity=0.093  Sum_probs=114.4

Q ss_pred             ccceeeEEecCCCCcEEEEEecC---Cc-EEEEECCCCee-eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769          266 TDSVLGLAWNKEFRNILASASAD---KQ-VKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~D---g~-v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  340 (502)
                      .....+|+|++++. ++++....   .. +...+...+.. ...+. .-.....++++|.+..++++-..++.|+.++..
T Consensus       181 ~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          181 IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            34588999999955 55554321   11 33333221111 01111 223456788999443766666678889999987


Q ss_pred             CCCCccceEee--cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC---------------
Q 010769          341 ISTHSGFKWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---------------  403 (502)
Q Consensus       341 ~~~~~~~~~~~--~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h---------------  403 (502)
                      ++.........  ......++|+|++..++++-...+.|+.++.......     ......+.+.               
T Consensus       259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~-----~~~~~~~ag~~g~~g~~dg~~~~a~  333 (433)
T 4hw6_A          259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK-----LAVPYIVCGQHSSPGWVDGMGTGAR  333 (433)
T ss_dssp             TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC-----BCCCEEEEECTTCCCCBCEEGGGSB
T ss_pred             CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc-----cCcEEEEEecCCCCccCCCcccceE
Confidence            65541212221  1223469999988756666677889999886532100     0011111111               


Q ss_pred             CCCeeEEEE---------cCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC---------------CCCCEEEEEEc-
Q 010769          404 DKAVCTISY---------NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP---------------KAGAVFSVAFS-  458 (502)
Q Consensus       404 ~~~v~~l~~---------sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~---------------~~~~v~~~~~s-  458 (502)
                      -.....+++         .+.+ .++++-...+.|+.++. ++....+.....               .-.....|+++ 
T Consensus       334 ~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~  411 (433)
T 4hw6_A          334 LWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM  411 (433)
T ss_dssp             CSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred             EcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence            123567888         5655 66666667788999985 443222221100               01236788998 


Q ss_pred             CCCCcEEEEEeCCCcEEEEECC
Q 010769          459 EDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       459 pd~~~llasg~~dg~i~vwd~~  480 (502)
                      +++. |+++=..+++|+.+++.
T Consensus       412 ~~g~-lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          412 KRKC-FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTTE-EEEEEGGGTEEEEEEEC
T ss_pred             CCCE-EEEEeCCCCEEEEEecC
Confidence            5555 56666666778877653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.06  E-value=0.00073  Score=63.52  Aligned_cols=195  Identities=11%  Similarity=0.176  Sum_probs=122.1

Q ss_pred             CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCC----CCc--EEEEEEC---CCcEEEEeCC--CCCCccc
Q 010769          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH----SPQ--ILLSGSF---DRSVVMKDAR--ISTHSGF  347 (502)
Q Consensus       279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~~--~l~s~~~---dg~i~vwd~~--~~~~~~~  347 (502)
                      ..+++.....+-+.+||+ +|+.++.+..  +.++.+..-|.    +..  ++++...   +++|.+|++.  +......
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i  116 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM  116 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence            346666677789999999 8888888863  56777776662    101  3344443   5789999773  3221111


Q ss_pred             e-----Eeec-CCeEEEEe--CCCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769          348 K-----WAVA-ADVESLAW--DPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       348 ~-----~~~~-~~v~~v~~--~p~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      .     .... ..+..+|+  +|.+. .++++...+|.+..|++.......  ...+.+.++.. .+.+-.+...+.. .
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~--~~~~lVR~f~l-gsq~EgcvvDd~~-g  192 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY--ISGKKVRAFKM-NSQTEGMAADDEY-G  192 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC--EEEEEEEEEEC-SSCEEEEEEETTT-T
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc--ccceEEEEecC-CCCcceEEEcCCC-C
Confidence            0     0111 44555666  77543 468888889999999985321000  00245556554 4578888888876 7


Q ss_pred             EEEEEeCCCcEEEEECCCC---CeeEEEEec-CC-CCCEEEEEE--cCCCC-cEEEEEeCCCcEEEEECC
Q 010769          419 LLATGSTDKMVKLWDLSNN---QPSCIASRN-PK-AGAVFSVAF--SEDSP-FVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~---~~~~~~~~~-~~-~~~v~~~~~--spd~~-~llasg~~dg~i~vwd~~  480 (502)
                      .|+.+-.+..|..++....   ....+.... ++ ...+..|++  .+++. |+|+++-.+.++.|||..
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            8999998877777775422   122333332 22 236888888  45555 777777677899999997

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.02  E-value=0.0026  Score=65.28  Aligned_cols=164  Identities=14%  Similarity=0.160  Sum_probs=96.5

Q ss_pred             CcEEEEECCCCeeeEEecc--CC--------CCeEEEEEc-CCCC--cEEEEEECCCcEEEEeCCCCCCccceEeec---
Q 010769          289 KQVKIWDVAAGKCNLTLEH--HT--------DKVQAVAWN-HHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVA---  352 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~--h~--------~~v~~l~~~-~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---  352 (502)
                      +.|..+|+.+|+.+..++.  |.        .++. +... .++.  .+++.++.+|.++++|.++++.+.......   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            5899999999999888743  32        1222 2221 3442  368889999999999998876532111000   


Q ss_pred             ---------CC---------------------------------eEEEEeCCCCCCEEEEEe------------------
Q 010769          353 ---------AD---------------------------------VESLAWDPHAEHSFVVSL------------------  372 (502)
Q Consensus       353 ---------~~---------------------------------v~~v~~~p~~~~~l~~~~------------------  372 (502)
                               +.                                 -..++++|... ++++..                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~  448 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS  448 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence                     00                                 01345666544 343322                  


Q ss_pred             ---------------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          373 ---------------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       373 ---------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                                     ..|.|..||+.++         +.+++...+. ++..-.+...+ .+++.++.|+.++.||.+++
T Consensus       449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG---------~~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG  517 (582)
T 1flg_A          449 AYLGMGFRIKRMYDDHVGSLRAMDPVSG---------KVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSG  517 (582)
T ss_dssp             CCCCEEEEEEESCSSCSEEEEEECTTTC---------CEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTC
T ss_pred             ceeccceeecCCCCCCcceEEEEECCCC---------CEEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCC
Confidence                           2578999999887         6666665432 22221111223 67888999999999999999


Q ss_pred             CeeEEEEecCCCCCE-EEEEEcCCCCcEEEE
Q 010769          438 QPSCIASRNPKAGAV-FSVAFSEDSPFVLAI  467 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v-~~~~~spd~~~llas  467 (502)
                      +.  +..+....+.+ .-+.|..+|+..+++
T Consensus       518 ~~--lW~~~~~~g~~a~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          518 KE--LWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             CE--EEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             CE--EEEecCCCCcccCceEEEECCEEEEEE
Confidence            84  44443322211 125566777633433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.01  E-value=0.00042  Score=61.83  Aligned_cols=169  Identities=9%  Similarity=-0.005  Sum_probs=111.6

Q ss_pred             eeeEEeccCC--CCeEEEEEcCCCCcEEEEEECCC--cEEEEeCCCCCCccceEeecCCe--EEEEeCCCCCCEEEEEeC
Q 010769          300 KCNLTLEHHT--DKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADV--ESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       300 ~~~~~~~~h~--~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v--~~v~~~p~~~~~l~~~~~  373 (502)
                      +.+.++. |.  ...+.|.|++ + .++.+.+..|  .|+.+|+.+++... ........  ..++..  +..++.+...
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~-~~~l~~~~fgeGi~~~--~~~ly~ltw~   83 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQ-RAEVPPPYFGAGIVAW--RDRLIQLTWR   83 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEE-EEECCTTCCEEEEEEE--TTEEEEEESS
T ss_pred             EEEEEcC-CCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEE-EEeCCCCcceeEEEEe--CCEEEEEEee
Confidence            3455663 44  4578999987 4 6777777754  89999999988665 33333333  333443  4556666778


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC---CC
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK---AG  450 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~---~~  450 (502)
                      ++.+.+||..+.         +.+.++.... .-..++  +++..++++ ..++.|.++|..+.+.........+   ..
T Consensus        84 ~~~v~v~D~~tl---------~~~~ti~~~~-~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~  150 (243)
T 3mbr_X           84 NHEGFVYDLATL---------TPRARFRYPG-EGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLD  150 (243)
T ss_dssp             SSEEEEEETTTT---------EEEEEEECSS-CCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             CCEEEEEECCcC---------cEEEEEeCCC-CceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccc
Confidence            999999999987         6666666433 224554  455345554 4588899999999875433333222   13


Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       451 ~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      .++.+.|. +|. +++..-.+..|.+.|..+++.+..+-
T Consensus       151 ~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          151 NLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             CEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred             cceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEE
Confidence            45667776 565 67666567799999999999876654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.99  E-value=0.0013  Score=64.96  Aligned_cols=208  Identities=7%  Similarity=0.081  Sum_probs=122.6

Q ss_pred             cceeeEEecCC--CCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC---C-cEEEEeCC
Q 010769          267 DSVLGLAWNKE--FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---R-SVVMKDAR  340 (502)
Q Consensus       267 ~~V~~l~~~~~--~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g-~i~vwd~~  340 (502)
                      ....+|+|.|+  .+ .|+.+...+.|+.+++.+++...... .......++|++++ .++++....   . .+..++..
T Consensus       139 ~~P~gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             SCCCEEEECTTTTTC-EEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGG
T ss_pred             CCCceEEEccccCCC-EEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCC-CEEEEcCCCCcccceEEEEECC
Confidence            35678999984  34 45555444899999998877654433 45568999999999 555544322   1 23333332


Q ss_pred             CCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-e-cCCCCeeEEEEcCCCCC
Q 010769          341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-H-AHDKAVCTISYNPLVPN  418 (502)
Q Consensus       341 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~-~h~~~v~~l~~sp~~~~  418 (502)
                      .................++++|....++++-..++.|+.++..++         .....+ . .....-..++|+|++..
T Consensus       216 ~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g---------~~~~~~~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          216 SGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG---------TLTEEEVMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             GTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC---------CEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred             CCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC---------eEEEEEeccCCCCCcccEEEeCCCCE
Confidence            211111122234456778899954556666667888999998754         221111 1 11223346999999833


Q ss_pred             EEEEEeCCCcEEEEECCC--CCe---eEEEEecC------------CCCCEEEEEE---------cCCCCcEEEEEeCCC
Q 010769          419 LLATGSTDKMVKLWDLSN--NQP---SCIASRNP------------KAGAVFSVAF---------SEDSPFVLAIGGSKG  472 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~--~~~---~~~~~~~~------------~~~~v~~~~~---------spd~~~llasg~~dg  472 (502)
                      ++++-...+.|+.+++..  +..   ..+....+            .......+++         .+++. ++++-...+
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~  365 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSH  365 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTT
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCC
Confidence            666666678899988653  221   11211101            1123667999         67776 566666678


Q ss_pred             cEEEEECCCCccccccc
Q 010769          473 KLEIWDTLSDAGISNRF  489 (502)
Q Consensus       473 ~i~vwd~~~~~~~~~~~  489 (502)
                      +|+.++. ++ .+....
T Consensus       366 ~I~~~~~-~G-~v~t~~  380 (433)
T 4hw6_A          366 TVRVLTP-EG-RVTTYA  380 (433)
T ss_dssp             EEEEECT-TS-EEEEEE
T ss_pred             EEEEECC-CC-CEEEEE
Confidence            8999985 34 344443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.95  E-value=0.0025  Score=65.84  Aligned_cols=210  Identities=9%  Similarity=0.075  Sum_probs=129.7

Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCee-eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      -..+..|+|++.++.++.+-...+.|..+++..... ...+...-.....|++.+.+.+++++-...+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            345789999987565555655678899999875532 2233333357889999987656777777789999999876543


Q ss_pred             ccceEeecCCeEEEEeCCCCCCEEEEEe-CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE
Q 010769          345 SGFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      .......-.....++++|.+..++++-. ..+.|...++...         .........-...+.|++.+.+.+++++-
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~---------~~~~l~~~~~~~P~Glald~~~~~LY~aD  189 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---------SRFIIINSEIYWPNGLTLDYEEQKLYWAD  189 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC---------ceEEEEeCCCCCCcEEEEEccCCEEEEEe
Confidence            3222223345778999887664455442 2467777776532         12222222345678999999764666666


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +..+.|..+++.......+..  ........+++..+  +++.+-...+.|...|..+++.+..+
T Consensus       190 ~~~~~I~~~~~dG~~~~~~~~--~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          190 AKLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             TTTCCEEEESSSCCEEC-----------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             CCCCeEEEecCCCCccEEEEe--CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEE
Confidence            667889999987654322222  11222356777666  46776666788999999887755433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=0.0013  Score=64.89  Aligned_cols=159  Identities=11%  Similarity=0.178  Sum_probs=99.0

Q ss_pred             cceeeEEecC-CCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC----cEEEEeCCC
Q 010769          267 DSVLGLAWNK-EFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMKDARI  341 (502)
Q Consensus       267 ~~V~~l~~~~-~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~~  341 (502)
                      .....|+++| +.+ .|+.+...+.|+.+|+..++...... .......|+|++++..++++....+    .+.+++.. 
T Consensus       137 ~~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-  213 (430)
T 3tc9_A          137 GGAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-  213 (430)
T ss_dssp             SCCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-
T ss_pred             CCCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-
Confidence            3567899998 434 45555555889999998776544443 4566889999999932444444332    23334432 


Q ss_pred             CCCc-cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769          342 STHS-GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       342 ~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      +... ............++++|.+..++++-...+.|+.|+......       ..+.... .......++|+|++..++
T Consensus       214 g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-------~~~~~~~-~~~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          214 SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-------TPLFTIQ-DSGWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-------EEEEECS-SSSCCEEEEECTTSSEEE
T ss_pred             CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-------EEEEEcC-CCCcceeEEEcCCCCEEE
Confidence            2222 112223455678889995555677777788999999875410       0111111 224567899999983366


Q ss_pred             EEEeCCCcEEEEECCC
Q 010769          421 ATGSTDKMVKLWDLSN  436 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~  436 (502)
                      ++-...+.|..++...
T Consensus       286 v~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          286 IVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEETTTTEEEEEEEET
T ss_pred             EEECCCCEEEEEeCCc
Confidence            6666788899987653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=0.0026  Score=63.14  Aligned_cols=213  Identities=8%  Similarity=0.079  Sum_probs=120.0

Q ss_pred             cceeeEEe-------cCCCCcEEEEEecCC------cEEEEECCC-Ceee-----EEeccCCCCeEEEEEcCCCCcEEEE
Q 010769          267 DSVLGLAW-------NKEFRNILASASADK------QVKIWDVAA-GKCN-----LTLEHHTDKVQAVAWNHHSPQILLS  327 (502)
Q Consensus       267 ~~V~~l~~-------~~~~~~~l~sgs~Dg------~v~vwd~~~-~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s  327 (502)
                      .....|+|       ++++..++++...++      .|.+.+... +...     ..+... .....++.+|.+..++++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence            46889999       999553444443332      266665333 2221     122211 234577889966577777


Q ss_pred             EECCCcEEEEeCC-------CCCC-----------ccceEee--cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCC
Q 010769          328 GSFDRSVVMKDAR-------ISTH-----------SGFKWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS  387 (502)
Q Consensus       328 ~~~dg~i~vwd~~-------~~~~-----------~~~~~~~--~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~  387 (502)
                      -..++.|..+|+.       ++..           .......  ......++|+|++..++++-+....|+.++......
T Consensus       265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~  344 (496)
T 3kya_A          265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK  344 (496)
T ss_dssp             ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence            7788899999987       4443           0011222  244679999999874555556788899876543210


Q ss_pred             CCCCCCCCccEEEecC---C------------CCee-EEEEc-------CCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769          388 DPDSTSQQSSFTLHAH---D------------KAVC-TISYN-------PLVPNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       388 ~~~~~~~~~~~~~~~h---~------------~~v~-~l~~s-------p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      .     ......+.+.   .            .... .++..       +.+ .++++-+..+.|+.++ .++....+.-
T Consensus       345 ~-----~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~-~~G~v~TiaG  417 (496)
T 3kya_A          345 E-----FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVT-PEGIVSTYAG  417 (496)
T ss_dssp             E-----ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEEC-TTCBEEEEEE
T ss_pred             e-----ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEe-CCCCEEEEec
Confidence            0     0000112111   0            1223 44443       334 6666666778899998 4454333322


Q ss_pred             ec-----------C----------CCCCEEEEEEcCC-CCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          445 RN-----------P----------KAGAVFSVAFSED-SPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       445 ~~-----------~----------~~~~v~~~~~spd-~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..           +          .-.....|+++++ +. |+++=..+.+|+.+++....++...
T Consensus       418 ~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~-lyVaD~~N~rIrki~~~~~~~~~~~  482 (496)
T 3kya_A          418 RGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM-FYVHDQVGHTIRTISMEQEENVAGD  482 (496)
T ss_dssp             SCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE-EEEEETTTTEEEEEEECCCC-----
T ss_pred             ccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE-EEEEeCCCCEEEEEECCCCcccccC
Confidence            10           1          1124678999997 65 6676667789999999887766543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.90  E-value=0.0041  Score=65.94  Aligned_cols=161  Identities=11%  Similarity=-0.014  Sum_probs=103.0

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC-CcEEEEeCCCCCCc
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHS  345 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~  345 (502)
                      .....|++.+.+++++++-...+.|.+.++........+...-.....|++.|.++.++++-... +.|...++......
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence            45678888887667777778889999999875544333333445688999999864555554333 67888888654432


Q ss_pred             cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec--CCCCeeEEEEcCCCCCEEEEE
Q 010769          346 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      ......-.....|++++.+..++++-...+.|..+++...         .....+..  .-....+|++..  .+++++-
T Consensus       551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~---------~~~~v~~~~~~l~~P~glav~~--~~lYwtD  619 (791)
T 3m0c_C          551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---------NRKTILEDEKRLAHPFSLAVFE--DKVFWTD  619 (791)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEEECTTTTSSEEEEEEET--TEEEEEE
T ss_pred             EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC---------ceEEEecCCCccCCCCEEEEeC--CEEEEEE
Confidence            2221222467889999877755566566778999998653         12122222  123345666643  3566666


Q ss_pred             eCCCcEEEEECCCCC
Q 010769          424 STDKMVKLWDLSNNQ  438 (502)
Q Consensus       424 s~dg~i~vwd~~~~~  438 (502)
                      ...+.|...+..+++
T Consensus       620 ~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          620 IINEAIFSANRLTGS  634 (791)
T ss_dssp             TTTTEEEEEETTTCC
T ss_pred             CCCCEEEEEeCCCCc
Confidence            667888888876654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.86  E-value=0.004  Score=61.81  Aligned_cols=218  Identities=11%  Similarity=0.069  Sum_probs=124.9

Q ss_pred             ceeeEEecC-CCCcEEEEEecCCcEEEEECCCCeeeEEeccC---CCCeEEEEE-------cCCCCcEEEEEECCC-c--
Q 010769          268 SVLGLAWNK-EFRNILASASADKQVKIWDVAAGKCNLTLEHH---TDKVQAVAW-------NHHSPQILLSGSFDR-S--  333 (502)
Q Consensus       268 ~V~~l~~~~-~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h---~~~v~~l~~-------~~~~~~~l~s~~~dg-~--  333 (502)
                      ....|+|.| +.++++++....+.|++.|+..+.....+...   ......|+|       ++++ ..|+++...+ .  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC-CEEEEEeCCCCCcc
Confidence            467899998 44555555554578999999887766544322   235889999       9998 5455554443 2  


Q ss_pred             ----EEEEeCCC-CCCcc----ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECC-------CCCCCCC-CCC---
Q 010769          334 ----VVMKDARI-STHSG----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR-------TAKSDPD-STS---  393 (502)
Q Consensus       334 ----i~vwd~~~-~~~~~----~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~-------~~~~~~~-~~~---  393 (502)
                          |.+++... +....    ...........++.+|.+..++++-..++.|..+|+.       ++..... ...   
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence                66666333 12210    1222334566788999777777788889999999997       4421000 000   


Q ss_pred             -CCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC--CCe---eEEEEecCCC------------CCEE-E
Q 010769          394 -QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN--NQP---SCIASRNPKA------------GAVF-S  454 (502)
Q Consensus       394 -~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~--~~~---~~~~~~~~~~------------~~v~-~  454 (502)
                       ...+... ........|+|+|++..++++-+..+.|+.++...  +..   ..+.-..+..            .... .
T Consensus       299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence             0011111 22344679999999833455556678898866533  221   1222211111            1234 4


Q ss_pred             EEEc-------CCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769          455 VAFS-------EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       455 ~~~s-------pd~~~llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      ++..       +++. |+++=....+|+.++. ++ .+.++.+
T Consensus       378 v~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~~-~G-~v~TiaG  417 (496)
T 3kya_A          378 VFVKNPDYTGEEEYD-FYFVDRLNFCVRKVTP-EG-IVSTYAG  417 (496)
T ss_dssp             EEEECTTCCSSCCEE-EEEEEGGGTEEEEECT-TC-BEEEEEE
T ss_pred             EEEccccccccCCCe-EEEEECCCCEEEEEeC-CC-CEEEEec
Confidence            4454       4555 5666667788999983 44 4444443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.84  E-value=0.00017  Score=75.83  Aligned_cols=162  Identities=10%  Similarity=-0.016  Sum_probs=99.3

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC-CcEEEEeCCCCCCcc
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSG  346 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~  346 (502)
                      ....|++.+.+++++++-...+.|.++++........+.........|++.|.++.++++-... +.|.++++.......
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~  533 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  533 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE
Confidence            3566788765566666666778999999876544333333334567889998764555544333 678887775433222


Q ss_pred             ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCC
Q 010769          347 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      .....-.....|+|+|.+..++++-+..+.|..+++....       ...+......-....+|++..  ..++++....
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-------~~~~~~~~~~~~~P~glavd~--~~lywtd~~~  604 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-------RKTILEDEKRLAHPFSLAVFE--DKVFWTDIIN  604 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-------CEEECCCSSSCSSCCCCEEET--TEEEEECSTT
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-------eEEEEecCCcCCCceEeEEEC--CEEEEEeCCC
Confidence            1111223467899999877777777778899999986431       011111111122344556654  2567777777


Q ss_pred             CcEEEEECCCCC
Q 010769          427 KMVKLWDLSNNQ  438 (502)
Q Consensus       427 g~i~vwd~~~~~  438 (502)
                      +.|..++..+++
T Consensus       605 ~~V~~~d~~~G~  616 (699)
T 1n7d_A          605 EAIFSANRLTGS  616 (699)
T ss_dssp             TCEEEEETTTEE
T ss_pred             CeEEEEEccCCC
Confidence            889999987765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.73  E-value=0.016  Score=55.36  Aligned_cols=238  Identities=11%  Similarity=0.142  Sum_probs=121.6

Q ss_pred             CcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee
Q 010769          192 FPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG  271 (502)
Q Consensus       192 ~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  271 (502)
                      .|..++|       .|+|+++++ ...|.|++++ +. . ..+..                    ... ...........
T Consensus        32 ~P~~ia~-------~pdG~l~V~-e~~g~I~~i~-~g-~-~~~~~--------------------~~~-v~~~g~~~p~g   79 (352)
T 2ism_A           32 VPWALAF-------LPDGGMLIA-ERPGRIRLFR-EG-R-LSTYA--------------------ELS-VYHRGESGLLG   79 (352)
T ss_dssp             CEEEEEE-------CTTSCEEEE-ETTTEEEEEE-TT-E-EEEEE--------------------ECC-CCCSTTCSEEE
T ss_pred             CceEEEE-------cCCCeEEEE-eCCCeEEEEE-CC-C-ccEee--------------------cce-EeecCCCCcee
Confidence            3556666       688985555 4569999988 31 1 11000                    000 11122356789


Q ss_pred             EEecCC---CCcEEEEEecC-----CcEEEEECCCCe-----ee-EEec---cCCCCeEEEEEcCCCCcEEEEEEC----
Q 010769          272 LAWNKE---FRNILASASAD-----KQVKIWDVAAGK-----CN-LTLE---HHTDKVQAVAWNHHSPQILLSGSF----  330 (502)
Q Consensus       272 l~~~~~---~~~~l~sgs~D-----g~v~vwd~~~~~-----~~-~~~~---~h~~~v~~l~~~~~~~~~l~s~~~----  330 (502)
                      |+|+|+   ++.+.++-+..     +.|..|++..+.     .+ ..+.   ........|+|.|+| .++++.+.    
T Consensus        80 ia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~  158 (352)
T 2ism_A           80 LALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYER  158 (352)
T ss_dssp             EEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCG
T ss_pred             EEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCC
Confidence            999997   45455444433     678888876431     12 2232   111123689999999 66665432    


Q ss_pred             ---------CCcEEEEeCCCCC-----------CccceEeec-CCeEEEEeCCCCCCEEEEEeCCCe--------EEEEE
Q 010769          331 ---------DRSVVMKDARIST-----------HSGFKWAVA-ADVESLAWDPHAEHSFVVSLEDGT--------IKGFD  381 (502)
Q Consensus       331 ---------dg~i~vwd~~~~~-----------~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~dg~--------i~i~d  381 (502)
                               .|.|.-++....-           .....+... .....++|+|....++++-.....        |.+. 
T Consensus       159 ~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i-  237 (352)
T 2ism_A          159 ELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI-  237 (352)
T ss_dssp             GGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE-
T ss_pred             ccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe-
Confidence                     2456666654310           011122221 235678899944445554433332        3333 


Q ss_pred             CCCCCCC--C-------CCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee----EEEEecCC
Q 010769          382 IRTAKSD--P-------DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS----CIASRNPK  448 (502)
Q Consensus       382 ~~~~~~~--~-------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~----~~~~~~~~  448 (502)
                       ..+...  +       ......++..+. +......++|. .+ .++++....+.|...++......    ....+...
T Consensus       238 -~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~  313 (352)
T 2ism_A          238 -VPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG  313 (352)
T ss_dssp             -CTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             -ccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchheeccc
Confidence             222100  0       000013444443 33346778884 34 66666666677887777644310    01111122


Q ss_pred             CCCEEEEEEcCCCCcEEEEE
Q 010769          449 AGAVFSVAFSEDSPFVLAIG  468 (502)
Q Consensus       449 ~~~v~~~~~spd~~~llasg  468 (502)
                      .+.+..+++.|+|. |+++.
T Consensus       314 ~~rp~~v~~~pdG~-lyv~~  332 (352)
T 2ism_A          314 FGRLREVQVGPDGA-LYVTT  332 (352)
T ss_dssp             SCCEEEEEECTTSC-EEEEE
T ss_pred             CCCeeEEEECCCCc-EEEEE
Confidence            36789999999997 45544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.73  E-value=0.011  Score=55.02  Aligned_cols=204  Identities=10%  Similarity=0.030  Sum_probs=119.2

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEE-ecc----CC--CCeEEEEE---cCCCCcEEEEEE-------
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT-LEH----HT--DKVQAVAW---NHHSPQILLSGS-------  329 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~-~~~----h~--~~v~~l~~---~~~~~~~l~s~~-------  329 (502)
                      ----+++|.+..+.++++.-..++|..|+...+..... +..    ..  ..+..|.|   .|.+ +++++..       
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccccc
Confidence            33457899887454444444789999999876543332 322    11  14579999   5776 7777544       


Q ss_pred             ------CCCcEEEEeCC---CCCCccceE--e-----------ecCCeEEEEeCCCCCCEEEEEeCC-CeEEEEECCCCC
Q 010769          330 ------FDRSVVMKDAR---ISTHSGFKW--A-----------VAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAK  386 (502)
Q Consensus       330 ------~dg~i~vwd~~---~~~~~~~~~--~-----------~~~~v~~v~~~p~~~~~l~~~~~d-g~i~i~d~~~~~  386 (502)
                            .+..|..||+.   +++.....-  .           .......++..++|. ..++++.. +.|..++.....
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGKT  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSCC
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCCE
Confidence                  26779999998   555432111  0           112477899999875 66667767 777666655320


Q ss_pred             CCCCCCCCCccEEEe----cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe-cC---CCCCEEEE-EE
Q 010769          387 SDPDSTSQQSSFTLH----AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-NP---KAGAVFSV-AF  457 (502)
Q Consensus       387 ~~~~~~~~~~~~~~~----~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~-~~---~~~~v~~~-~~  457 (502)
                              ...+-+.    ......+.|+++|++ ++|++....|.|..+|+.......+... .+   .......| ..
T Consensus       171 --------~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~  241 (334)
T 2p9w_A          171 --------VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTV  241 (334)
T ss_dssp             --------EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEE
T ss_pred             --------EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccc
Confidence                    1111111    112347799999998 6666655599999999985321012111 01   11123343 33


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCC
Q 010769          458 SEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       458 spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      -.+|..+|++.+..+.+.+.+...
T Consensus       242 ~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          242 PVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EETTEEEEEEEETTEEEEEECSST
T ss_pred             ccCCEEEEEEcCCCCEEEEECCCC
Confidence            346764466666666666655443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.71  E-value=0.034  Score=52.33  Aligned_cols=195  Identities=10%  Similarity=0.055  Sum_probs=101.5

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCee-eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEE-EeCCCCCC
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-KDARISTH  344 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v-wd~~~~~~  344 (502)
                      ..+..|.+.++ +.+++++ .+|.|..- ...++. ......+...+..+.+.+++ .+++++ ..|.+.. .|-....-
T Consensus       122 ~~~~~i~~~~~-~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g-~~G~~~~S~d~gG~tW  196 (327)
T 2xbg_A          122 GSPRLIKALGN-GSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVS-SRGSFYSTWEPGQTAW  196 (327)
T ss_dssp             SCEEEEEEEET-TEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEE-TTSSEEEEECTTCSSC
T ss_pred             CCeEEEEEECC-CCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEE-CCCcEEEEeCCCCCce
Confidence            44677777665 4455544 45654321 122322 12223455678999999977 655554 4555544 33211111


Q ss_pred             ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEEEEE
Q 010769          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      ..........+..+.+.+++.  +++.+.+|.+++.....+..      ...+..- ..+...+.++.+.+.+ .+++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G~~~~s~~D~G~t------W~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g  267 (327)
T 2xbg_A          197 EPHNRTTSRRLHNMGFTPDGR--LWMIVNGGKIAFSDPDNSEN------WGELLSPLRRNSVGFLDLAYRTPN-EVWLAG  267 (327)
T ss_dssp             EEEECCSSSCEEEEEECTTSC--EEEEETTTEEEEEETTEEEE------ECCCBCTTSSCCSCEEEEEESSSS-CEEEEE
T ss_pred             eECCCCCCCccceeEECCCCC--EEEEeCCceEEEecCCCCCe------eEeccCCcccCCcceEEEEecCCC-EEEEEe
Confidence            111112345678888988754  55566788877764221100      0000000 0122357888898865 555554


Q ss_pred             eCCCcEEEEECCCCCeeEEEEe-cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          424 STDKMVKLWDLSNNQPSCIASR-NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                       .++.| ++....++.-..... ......+.++.|.+++.  +++++.+|.|.-++-
T Consensus       268 -~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~--~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          268 -GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ--GFILGQKGILLRYVT  320 (327)
T ss_dssp             -STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE--EEEECSTTEEEEECC
T ss_pred             -CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc--eEEEcCCceEEEEcC
Confidence             46766 455554442111111 12235678888876554  556678898776654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.63  E-value=0.0068  Score=54.67  Aligned_cols=169  Identities=9%  Similarity=0.134  Sum_probs=107.8

Q ss_pred             EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee--cCCeEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 010769          304 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFD  381 (502)
Q Consensus       304 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d  381 (502)
                      .+.+-...+..++|+|++..++++...++.|...|.. ++... ....  ......+++.+++. ++++.-.++.+.+++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~-~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIR-TIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVIS   97 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEE-EEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEE-EEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEE
Confidence            4455556799999999875677778889999999987 44333 3322  25788999987653 555555678899998


Q ss_pred             CCCCCCCCCCCCCCccEEEe------cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC---CCeeEEEE-----ecC
Q 010769          382 IRTAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN---NQPSCIAS-----RNP  447 (502)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~---~~~~~~~~-----~~~  447 (502)
                      +.....      ...+....      .......+++|+|.+ ..|+++.......+|.+..   .....+..     ...
T Consensus        98 v~~~~~------i~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~  170 (255)
T 3qqz_A           98 LTPNSE------VKILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF  170 (255)
T ss_dssp             ECTTCC------EEEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred             cCCCCe------eeeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence            876521      01111111      234557899999987 4555555444444544431   11111211     112


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      +...+.+++++|....+++.+.....|.++|....
T Consensus       171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             CSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred             ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence            34457899999988778888888889999997643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.61  E-value=0.051  Score=51.76  Aligned_cols=243  Identities=11%  Similarity=0.103  Sum_probs=121.9

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      |..++|       .|+|++|.++...|.|++++.+.. ...++.                    ...............|
T Consensus        20 P~~i~~-------~pdG~~l~V~e~~G~i~~~~~~g~-~~~~~~--------------------~~~~v~~~g~~g~~gi   71 (353)
T 2g8s_A           20 PWALAF-------LPDNHGMLITLRGGELRHWQAGKG-LSAPLS--------------------GVPDVWAHGQGGLLDV   71 (353)
T ss_dssp             EEEEEE-------CSTTCCEEEEETTTEEEEEETTTE-ECCCCB--------------------SCCCCCCSTTCSEEEE
T ss_pred             cEEEEE-------cCCCCEEEEEeCCceEEEEeCCCc-eeeEec--------------------CCcccccCCCCCceeE
Confidence            456666       688983445556799998875321 000000                    0000111223457899


Q ss_pred             EecCC---CCcEEEEEec-------CCcEEEEECCCC-------eeeE-Eecc---CCCCeEEEEEcCCCCcEEEEEEC-
Q 010769          273 AWNKE---FRNILASASA-------DKQVKIWDVAAG-------KCNL-TLEH---HTDKVQAVAWNHHSPQILLSGSF-  330 (502)
Q Consensus       273 ~~~~~---~~~~l~sgs~-------Dg~v~vwd~~~~-------~~~~-~~~~---h~~~v~~l~~~~~~~~~l~s~~~-  330 (502)
                      +|+|+   ++.+.++-+.       ...|..|++...       +.+. .+..   .......|.|.|+| .++++.+. 
T Consensus        72 a~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~  150 (353)
T 2g8s_A           72 VLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGEN  150 (353)
T ss_dssp             EECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCT
T ss_pred             EECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCC
Confidence            99995   3544444333       235666666532       1111 1110   11123579999999 66665443 


Q ss_pred             ------------CCcEEEEeCCCCCC-----------ccceEeec-CCeEEEEeCCCCCCEEEEEe-CCCeEEEEECCCC
Q 010769          331 ------------DRSVVMKDARISTH-----------SGFKWAVA-ADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTA  385 (502)
Q Consensus       331 ------------dg~i~vwd~~~~~~-----------~~~~~~~~-~~v~~v~~~p~~~~~l~~~~-~dg~i~i~d~~~~  385 (502)
                                  .|.|.-++....-.           ....+... .....++|+|....++++-. .++.=.+.-+..+
T Consensus       151 ~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G  230 (353)
T 2g8s_A          151 NQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKG  230 (353)
T ss_dssp             TCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTT
T ss_pred             CCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccC
Confidence                        24566666653200           11123222 23678999994343333322 1211122222211


Q ss_pred             CCC----------------------CCCCCCCccEEEecCCCCeeEEEEcC-------CCCCEEEEEeCCCcEEEEECCC
Q 010769          386 KSD----------------------PDSTSQQSSFTLHAHDKAVCTISYNP-------LVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       386 ~~~----------------------~~~~~~~~~~~~~~h~~~v~~l~~sp-------~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      ...                      .......++..+..| .....+.|..       ++ .++++....+.|...++..
T Consensus       231 ~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~  308 (353)
T 2g8s_A          231 KNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNG  308 (353)
T ss_dssp             CBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEET
T ss_pred             CcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCC
Confidence            100                      000012344444433 4567788864       24 6777766778888888776


Q ss_pred             CCeeEEEEe-cCCCCCEEEEEEcCCCCcEEEE
Q 010769          437 NQPSCIASR-NPKAGAVFSVAFSEDSPFVLAI  467 (502)
Q Consensus       437 ~~~~~~~~~-~~~~~~v~~~~~spd~~~llas  467 (502)
                      ++......+ ......+..+++.|+|. |+++
T Consensus       309 ~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~  339 (353)
T 2g8s_A          309 DKVTEDGRILTDRGQRIRDVRTGPDGY-LYVL  339 (353)
T ss_dssp             TEEEEEEEESGGGCCCEEEEEECTTSC-EEEE
T ss_pred             CeEeeeEEcccCCCCceeEEEECCCCc-EEEE
Confidence            543222222 22235799999999998 4554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.59  E-value=0.0043  Score=63.68  Aligned_cols=192  Identities=12%  Similarity=0.115  Sum_probs=118.2

Q ss_pred             EEEEEec-CCcEEEEEC-CCCeeeEEeccCCCC-----------eEEEEEcCCCC---cEEEEEECCCcEEEEeCCCCCC
Q 010769          281 ILASASA-DKQVKIWDV-AAGKCNLTLEHHTDK-----------VQAVAWNHHSP---QILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       281 ~l~sgs~-Dg~v~vwd~-~~~~~~~~~~~h~~~-----------v~~l~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      .|+.++. ++.|.-+|. .+|+.+.++......           ...+.+.|.+.   ..++.++.++.|..+|..+++.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~  143 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence            6777777 889999999 899988877532211           12244433331   2377888999999999998875


Q ss_pred             ccceEeecC-----CeEE-EEeCCCCCCEEEEEe------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCC------
Q 010769          345 SGFKWAVAA-----DVES-LAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA------  406 (502)
Q Consensus       345 ~~~~~~~~~-----~v~~-v~~~p~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~------  406 (502)
                      .-.. ....     .+.+ -...  +. .+++++      .+|.|+.+|.+++         +.++++......      
T Consensus       144 ~W~~-~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG---------~~~W~~~~~~~~~~~~~~  210 (599)
T 1w6s_A          144 VWKV-ENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTG---------EQVWRAYATGPDKDLLLA  210 (599)
T ss_dssp             EEEE-ECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTC---------CEEEEEESSSCHHHHTBC
T ss_pred             EEee-cCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCC---------cEEEEEcCCCCccccccc
Confidence            4221 1111     1111 0111  23 566655      3799999999987         555555432111      


Q ss_pred             -------------------------------e-eEEEEcCCCCCEEEEEeCC----------------CcEEEEECCCCC
Q 010769          407 -------------------------------V-CTISYNPLVPNLLATGSTD----------------KMVKLWDLSNNQ  438 (502)
Q Consensus       407 -------------------------------v-~~l~~sp~~~~~l~t~s~d----------------g~i~vwd~~~~~  438 (502)
                                                     + ..+++.+.. .+++.++.+                +.|..+|..+++
T Consensus       211 p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~  289 (599)
T 1w6s_A          211 SDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE  289 (599)
T ss_dssp             TTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred             cccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence                                           0 134555655 566666654                379999999998


Q ss_pred             eeEEEEecCCC--------CCEEEEEEc-CCCC--cEEEEEeCCCcEEEEECCCCccccc
Q 010769          439 PSCIASRNPKA--------GAVFSVAFS-EDSP--FVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       439 ~~~~~~~~~~~--------~~v~~~~~s-pd~~--~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ..-.+....|.        .++. +... .+|+  .+++.++.+|.++++|..+++.+..
T Consensus       290 ~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~  348 (599)
T 1w6s_A          290 AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (599)
T ss_dssp             EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence            54444444332        2232 2222 4562  2577788999999999999998754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.58  E-value=0.061  Score=55.44  Aligned_cols=203  Identities=6%  Similarity=0.039  Sum_probs=125.5

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      ..+.+|+|.+..+.++++-...+.|+.+++........+...-.....+++.+.+.+++++-+..+.|.+.++.......
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~  428 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI  428 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence            45778999986565666666678899999876443333333335677888887664777777778899999987654322


Q ss_pred             ceEeecCCeEEEEeCCCCCCEEEEEe-CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769          347 FKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      .....-.....++++|..+.++++-. ..+.|...++...         .........-...+.|++.+...++.++=+.
T Consensus       429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~---------~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~  499 (619)
T 3s94_A          429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS---------DRVVLVNTSLGWPNGLALDYDEGKIYWGDAK  499 (619)
T ss_dssp             EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC---------ccEEEEeCCCCCCeeeEEcccCCEEEEEECC
Confidence            11122345789999997554444432 2467777766532         1111222234567899999876455555556


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      .+.|..+++.......+..  .......+++...+  +++.+-...+.|...+..++
T Consensus       500 ~~~I~~~~~dG~~~~~~~~--~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          500 TDKIEVMNTDGTGRRVLVE--DKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             TTEEEEEESSSCCCEEEEE--CCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSC
T ss_pred             CCEEEEEecCCCceEEEec--cCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCC
Confidence            6789999987654332322  11222345565544  46666555667777777776

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.57  E-value=0.071  Score=59.05  Aligned_cols=291  Identities=11%  Similarity=0.113  Sum_probs=145.2

Q ss_pred             ccccccccccCC------CceEEEEEe-cCCcceeEEEEEecCCCCCCceeeeecccc--CCCcceeeeecCCCCCCCCC
Q 010769          139 SEDLEDMTINPN------DAVIVCARN-EDDVSHLEVYILEESDGGDPNLYVHHHIII--PAFPLCMAWLDCPLKDREKG  209 (502)
Q Consensus       139 ~~~v~~~~~~p~------~~~l~~~~~-~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~w~~~~~~~s~~~  209 (502)
                      +.+|.|+.+.|.      .+++++|.. ++   +++|+.+..  .   ..  .+...+  ...|-.+....+     ...
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~---tv~I~sL~~--l---~~--~~~~~L~~~~~p~si~l~~~-----~~~  617 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDI---SARILKLPS--F---EL--LHKEMLGGEIIPRSILMTTF-----ESS  617 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTT---EEEEEETTT--C---CE--EEEEECCSSCCEEEEEEEEE-----TTE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCC---EEEEEECCC--C---Ce--EEEEECCCCCCCcEEEEEEe-----CCC
Confidence            357899999864      368899986 54   556665542  1   11  121122  224444433322     245


Q ss_pred             CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC
Q 010769          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  289 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg  289 (502)
                      .+|.+|-.||.+.-+.++........                     .....+ | +.++.-..+...+..-++++|. .
T Consensus       618 ~~L~igl~dG~l~~~~~d~~tg~l~d---------------------~r~~~L-G-~~pv~L~~~~~~~~~~V~a~s~-r  673 (1158)
T 3ei3_A          618 HYLLCALGDGALFYFGLNIETGLLSD---------------------RKKVTL-G-TQPTVLRTFRSLSTTNVFACSD-R  673 (1158)
T ss_dssp             EEEEEEETTSEEEEEEECTTTCCEEE---------------------EEEEEC-C-SSCCEEEEEESSSCEEEEEESS-S
T ss_pred             cEEEEEeCCCeEEEEEEcCCCCcccc---------------------ceeEEc-C-CCceEEEEEeeCCceeEEEECC-C
Confidence            78999999999877776532111000                     000011 1 2344333343333333333333 3


Q ss_pred             cEEEEECCCCeeeE-EeccCCCCe-EEEEEcCCC-CcEEEEEECCCcEEEEeCCCCCC-ccceEeecCCeEEEEeCCCCC
Q 010769          290 QVKIWDVAAGKCNL-TLEHHTDKV-QAVAWNHHS-PQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAE  365 (502)
Q Consensus       290 ~v~vwd~~~~~~~~-~~~~h~~~v-~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~v~~~p~~~  365 (502)
                      ...++--+ ++... .+.  -..+ ....|+... +.-++.. .++.++|.-+..... ..........+..++++|..+
T Consensus       674 p~liy~~~-~~l~~s~l~--~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~  749 (1158)
T 3ei3_A          674 PTVIYSSN-HKLVFSNVN--LKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQ  749 (1158)
T ss_dssp             CEEEEESS-SSEEEEEBS--SSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGT
T ss_pred             CEEEEEcC-CceEEeccC--hHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCC
Confidence            33334322 22221 111  1123 233454322 2334433 355699888754322 222345567788999998766


Q ss_pred             CEEEEEeCC------------------------------------------------CeEEEEECCCCCCCCCCCCCCcc
Q 010769          366 HSFVVSLED------------------------------------------------GTIKGFDIRTAKSDPDSTSQQSS  397 (502)
Q Consensus       366 ~~l~~~~~d------------------------------------------------g~i~i~d~~~~~~~~~~~~~~~~  397 (502)
                      .++++.+..                                                +.|+++|-.+.         ..+
T Consensus       750 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---------~~i  820 (1158)
T 3ei3_A          750 CFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTF---------EVL  820 (1158)
T ss_dssp             EEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTC---------CEE
T ss_pred             EEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCC---------eEE
Confidence            333333211                                                12333443332         222


Q ss_pred             EEEecC-CCCeeEEE---EcCCCCCEEEEEe----------CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCc
Q 010769          398 FTLHAH-DKAVCTIS---YNPLVPNLLATGS----------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF  463 (502)
Q Consensus       398 ~~~~~h-~~~v~~l~---~sp~~~~~l~t~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~  463 (502)
                      ..+.-. ...+.+++   |......+|+.|+          ..|.|++|++...+...+.... ..++|++++--. | +
T Consensus       821 ~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~-v~g~v~al~~~~-g-~  897 (1158)
T 3ei3_A          821 HAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE-VKGAVYSMVEFN-G-K  897 (1158)
T ss_dssp             EEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE-ESSCEEEEEEET-T-E
T ss_pred             EEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE-cCCcCEEEeeeC-C-E
Confidence            222111 12233433   3333346888876          3478999999766654454433 467898887543 4 3


Q ss_pred             EEEEEeCCCcEEEEECCCCcccc
Q 010769          464 VLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       464 llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      +|++.  ..+|++|++...+.++
T Consensus       898 Lla~i--g~~l~vy~l~~~~~L~  918 (1158)
T 3ei3_A          898 LLASI--NSTVRLYEWTTEKELR  918 (1158)
T ss_dssp             EEEEE--TTEEEEEEECTTSCEE
T ss_pred             EEEEc--CCEEEEEECCCCceEE
Confidence            56544  4689999998766544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.55  E-value=0.044  Score=56.62  Aligned_cols=207  Identities=8%  Similarity=0.044  Sum_probs=129.0

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc------CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR  340 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  340 (502)
                      ..+..|+|.+..+.++.+=...+.|+.+++........+..      ....+..|++...+.+++++-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            44778888887555555555667888888764433223322      234688999998875677777778899999986


Q ss_pred             CCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769          341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       341 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      .................++++|....++++-....  .|...++...         .........-...+.|++.+...+
T Consensus       420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~---------~~~~l~~~~l~~P~gla~D~~~~~  490 (628)
T 4a0p_A          420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT---------EREVLFFSGLSKPIALALDSRLGK  490 (628)
T ss_dssp             SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC---------SCEEEECSSCSCEEEEEEETTTTE
T ss_pred             CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC---------CcEEEEeccCCCccEEEEeCCCCE
Confidence            43222212223356889999996554555543333  5666666532         121222223446789999997645


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      +..+=+..+.|..+++.......+..  .......++++.. + +++.+-.....|...|..+++...
T Consensus       491 LYw~D~~~~~I~~~~~dG~~r~~~~~--~~~~~P~glav~~-~-~ly~tD~~~~~i~~~~k~~G~~~~  554 (628)
T 4a0p_A          491 LFWADSDLRRIESSDLSGANRIVLED--SNILQPVGLTVFE-N-WLYWIDKQQQMIEKIDMTGREGRT  554 (628)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEEC--SSCSCEEEEEEET-T-EEEEEETTTTEEEEEETTSSSCCE
T ss_pred             EEEEeCCCCEEEEEeCCCCceEEEEc--CCCCCcEEEEEEC-C-EEEEEECCCCeEEEEECcCCCCcE
Confidence            55555567889999997655322221  2334567888765 3 367776667788888888776543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.42  E-value=0.092  Score=50.52  Aligned_cols=199  Identities=11%  Similarity=0.145  Sum_probs=129.2

Q ss_pred             eEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-
Q 010769          271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-  349 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-  349 (502)
                      +.-.||. .++||.=. ..++.|+|+++...+..+.. ...|.-=.|-...  .|+-.+ +..|+-|++.....+...+ 
T Consensus        70 sAIMnP~-~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFd  143 (494)
T 1bpo_A           70 SAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFD  143 (494)
T ss_dssp             EEEECSS-SSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEE
T ss_pred             eeeeCCC-CcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhhee
Confidence            3456787 55666654 68999999999998888875 4456666776544  444433 5689999997644433333 


Q ss_pred             ee----cCCeEEEEeCCCCCCEEEEEe------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC--CC
Q 010769          350 AV----AADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--VP  417 (502)
Q Consensus       350 ~~----~~~v~~v~~~p~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~--~~  417 (502)
                      .|    ...|.....+++...++++|-      -.|.+.+|....          +....+.+|...-..+.+..+  ..
T Consensus       144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er----------~~sQ~ieGhaa~F~~~~~~g~~~~~  213 (494)
T 1bpo_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----------KVSQPIEGHAASFAQFKMEGNAEES  213 (494)
T ss_dssp             CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT----------CCEEEECCSEEEEEEEECTTCSSEE
T ss_pred             cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc----------cccchheeeeeeeEEEecCCCCCCc
Confidence            22    345777788888887777664      347789999885          455667777665544443321  11


Q ss_pred             CEEEEEeCC---CcEEEEECCCC---C-e--eEEEE--e--cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          418 NLLATGSTD---KMVKLWDLSNN---Q-P--SCIAS--R--NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       418 ~~l~t~s~d---g~i~vwd~~~~---~-~--~~~~~--~--~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      .+++.+...   +.++|.++...   . +  .....  +  ........++..++... ++..-+.-|.|++||+.++.+
T Consensus       214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCE
T ss_pred             eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEeccccee
Confidence            344444443   68999988543   1 1  01111  1  12244566888888877 577778999999999999998


Q ss_pred             cc
Q 010769          485 IS  486 (502)
Q Consensus       485 ~~  486 (502)
                      +.
T Consensus       293 i~  294 (494)
T 1bpo_A          293 IY  294 (494)
T ss_dssp             EE
T ss_pred             ee
Confidence            74

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.40  E-value=0.034  Score=52.18  Aligned_cols=146  Identities=10%  Similarity=0.128  Sum_probs=90.5

Q ss_pred             CCcEEEEECC--CCeeeEEecc------CC-CCeEEEEE--cCCCC-cEEEEEECCCcEEEEeCCCC---CC---ccceE
Q 010769          288 DKQVKIWDVA--AGKCNLTLEH------HT-DKVQAVAW--NHHSP-QILLSGSFDRSVVMKDARIS---TH---SGFKW  349 (502)
Q Consensus       288 Dg~v~vwd~~--~~~~~~~~~~------h~-~~v~~l~~--~~~~~-~~l~s~~~dg~i~vwd~~~~---~~---~~~~~  349 (502)
                      +++|++|++.  ++. +..+..      .. ..+..+++  +|... .++++...+|.+..|++...   ..   ....+
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            5789999773  333 444421      11 45666777  67543 46888888999999998432   11   12345


Q ss_pred             eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-cC-CCCeeEEEE--cCCCCCEEEEEe-
Q 010769          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AH-DKAVCTISY--NPLVPNLLATGS-  424 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~h-~~~v~~l~~--sp~~~~~l~t~s-  424 (502)
                      ...+.+..+...+... .|+++-++..|..|+........    ...+..+. ++ ...+..|++  .+++..+|++++ 
T Consensus       177 ~lgsq~EgcvvDd~~g-~Lyv~eEd~GIw~~da~p~~~~~----~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ  251 (355)
T 3amr_A          177 KMNSQTEGMAADDEYG-RLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ  251 (355)
T ss_dssp             ECSSCEEEEEEETTTT-EEEEEETTTEEEEEECSTTSCSC----CEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             cCCCCcceEEEcCCCC-eEEEecccceEEEEeCCcCCCCC----ceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence            6678899999998655 78888888777777755331100    12232221 12 246788888  455533555555 


Q ss_pred             CCCcEEEEECC-CCCe
Q 010769          425 TDKMVKLWDLS-NNQP  439 (502)
Q Consensus       425 ~dg~i~vwd~~-~~~~  439 (502)
                      .++++.+||.. +.+.
T Consensus       252 G~~s~~Vydr~~~~~~  267 (355)
T 3amr_A          252 GNSSYAIYDRQGKNKY  267 (355)
T ss_dssp             GGTEEEEEESSTTCCE
T ss_pred             CCCEEEEEECCCCCcE
Confidence            57799999997 4553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.31  E-value=0.011  Score=54.88  Aligned_cols=185  Identities=16%  Similarity=0.189  Sum_probs=94.0

Q ss_pred             CcEEEEEecC-----CcEEEEECCCCe---e--eEEeccCCCCeEEEEEcCCCCcEEEEEECC-----CcEEEEeCCCCC
Q 010769          279 RNILASASAD-----KQVKIWDVAAGK---C--NLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARIST  343 (502)
Q Consensus       279 ~~~l~sgs~D-----g~v~vwd~~~~~---~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~  343 (502)
                      +.+++.|+.+     ..+.+||+.+.+   -  +..+........++.+  ++ .+++.|+.+     ..+.+||+.+.+
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCCe
Confidence            4577777754     468999988765   2  2222211122222233  34 677777654     357888887643


Q ss_pred             CccceEeec---CCeEEEEeCCCCCCEEEEEeCC-----CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          344 HSGFKWAVA---ADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       344 ~~~~~~~~~---~~v~~v~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      -... ....   ....++.+   +..+++.|+.+     ..+.+||+.+..       ...+..+.........+.+  +
T Consensus       140 W~~~-~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~-------W~~~~~~p~~r~~~~~~~~--~  206 (301)
T 2vpj_A          140 WSML-GDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGH-------WTNVTPMATKRSGAGVALL--N  206 (301)
T ss_dssp             EEEE-EECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--T
T ss_pred             EEEC-CCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCc-------EEeCCCCCcccccceEEEE--C
Confidence            2211 1111   11222233   23466666644     458888887642       0111111111111122222  2


Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010769          416 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA  483 (502)
Q Consensus       416 ~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d-----g~i~vwd~~~~~  483 (502)
                      + .+++.|+.+     ..+.+||+.+.+...+............+.+  ++. +++.||.+     ..+.+||+.+.+
T Consensus       207 ~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          207 D-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             T-EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             C-EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCCCe
Confidence            3 677777764     4689999998875444332222222222333  454 67777765     357889987643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.29  E-value=0.015  Score=54.17  Aligned_cols=164  Identities=10%  Similarity=0.108  Sum_probs=104.1

Q ss_pred             ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee-------cCCeEEEEe---CCCCCCEEEEEe---
Q 010769          306 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-------AADVESLAW---DPHAEHSFVVSL---  372 (502)
Q Consensus       306 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~v~~---~p~~~~~l~~~~---  372 (502)
                      .....-..+++|++....++++.-..++|..|+...+.........       ...+..+.|   .|.+ .++++..   
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~   87 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAK   87 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETT
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccc
Confidence            3334455678999876455555558999999998754332221111       113578999   6764 3555433   


Q ss_pred             ----------CCCeEEEEECC---CCCCCCCCCCCCccEEEe--cC-----------CCCeeEEEEcCCCCCEEEEEeCC
Q 010769          373 ----------EDGTIKGFDIR---TAKSDPDSTSQQSSFTLH--AH-----------DKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       373 ----------~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~--~h-----------~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                                .+..|..||+.   ++         +.++...  ..           ......++..++| +..++++.-
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg---------~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~  157 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENS---------KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALG  157 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTC---------CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEES
T ss_pred             cccccccccCCCCEEEEEcCCcCCCC---------CEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCC
Confidence                      26789999998   55         4444332  11           1247899999998 888888877


Q ss_pred             -CcEEEEECCCCCeeEEEE-e--cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          427 -KMVKLWDLSNNQPSCIAS-R--NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       427 -g~i~vwd~~~~~~~~~~~-~--~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                       +.|..++........... .  .......+.|+++|++..|++ ....|.|..+|+.+
T Consensus       158 ~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv-~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          158 MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIA-FGGPRALTAFDVSK  215 (334)
T ss_dssp             SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEE-ESSSSSEEEEECSS
T ss_pred             CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEE-EcCCCeEEEEcCCC
Confidence             887777776543221111 1  111223678999999985454 44499999999884

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.27  E-value=0.027  Score=52.14  Aligned_cols=148  Identities=16%  Similarity=0.176  Sum_probs=74.2

Q ss_pred             CcEEEEEecC-----CcEEEEECCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECC-----CcEEEEeCCCCCCcc
Q 010769          279 RNILASASAD-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSG  346 (502)
Q Consensus       279 ~~~l~sgs~D-----g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~  346 (502)
                      +.+++.|+.+     ..+.+||+.+.+-..  .+........++.+  ++ .+++.|+.+     ..+.+||+.+..-..
T Consensus       113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            4567777654     368899988765332  22211112222222  34 677777754     458888887643211


Q ss_pred             ce--EeecCCeEEEEeCCCCCCEEEEEeCC-----CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCE
Q 010769          347 FK--WAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       347 ~~--~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                      ..  ........++.+   +..+++.|+.+     ..+.+||+.+..       ...+..+.........+.+  ++ .+
T Consensus       190 ~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~-~i  256 (301)
T 2vpj_A          190 VTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS-------WTTVTSMTTPRCYVGATVL--RG-RL  256 (301)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--TT-EE
T ss_pred             CCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc-------EEECCCCCCcccceeEEEE--CC-EE
Confidence            00  000111223333   24467777654     468899987652       0111111111111122222  33 67


Q ss_pred             EEEEeCC-----CcEEEEECCCCCeeEE
Q 010769          420 LATGSTD-----KMVKLWDLSNNQPSCI  442 (502)
Q Consensus       420 l~t~s~d-----g~i~vwd~~~~~~~~~  442 (502)
                      ++.|+.+     ..|.+||+.+.+...+
T Consensus       257 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~  284 (301)
T 2vpj_A          257 YAIAGYDGNSLLSSIECYDPIIDSWEVV  284 (301)
T ss_dssp             EEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred             EEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence            7777765     3578899888764333

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.24  E-value=0.16  Score=48.93  Aligned_cols=244  Identities=13%  Similarity=0.180  Sum_probs=146.2

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|..+.||.=. ..++.|||+++...+..                         +   .....|.-=.|-..  +.|+-.
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K~klks-------------------------~---~~~e~VvfWkWis~--~~l~lV  122 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKA-------------------------H---TMTDDVTFWKWISL--NTVALV  122 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTTEEEEE-------------------------E---ECSSCCCEEEEEET--TEEEEE
T ss_pred             CCCCcEEEEec-CCeEEEEchHHhhhhcc-------------------------e---ecCCCceEEEecCC--CeEEEE
Confidence            67788888765 68999999985222111                         1   12346777777655  355555


Q ss_pred             ecCCcEEEEECCC-CeeeEEeccC----CCCeEEEEEcCCCCcEEEEEE------CCCcEEEEeCCCCCCccceEeecCC
Q 010769          286 SADKQVKIWDVAA-GKCNLTLEHH----TDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       286 s~Dg~v~vwd~~~-~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~  354 (502)
                      +. ..|.-|++.. ..+++.|..|    ...|..-..+++..-++++|-      -.|.+.+|......... ..+|.+.
T Consensus       123 T~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-ieGhaa~  200 (494)
T 1bpo_A          123 TD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAAS  200 (494)
T ss_dssp             CS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE-ECCSEEE
T ss_pred             cC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch-heeeeee
Confidence            44 5799999964 3566666444    356777778888844444443      24678889887654322 3333333


Q ss_pred             eEEEEeCC--CCCCEEEEEeC---CCeEEEEECCCCCCCCCCCCCCccEEE----ecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769          355 VESLAWDP--HAEHSFVVSLE---DGTIKGFDIRTAKSDPDSTSQQSSFTL----HAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       355 v~~v~~~p--~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ...+....  ....+|+.+..   .+.+++.++.......... .+....+    .....--.++..++.. .+++.-+.
T Consensus       201 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f-~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK  278 (494)
T 1bpo_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-PKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITK  278 (494)
T ss_dssp             EEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC-CCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEET
T ss_pred             eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc-cceeeeeeCCcccccCceeEEEecccC-CEEEEEec
Confidence            33333221  11223333333   3789999996541111000 1111111    1123445678888876 78888899


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      -|.|++||+.++.  +++.-.-...+|+..+-...... +++-...|.|.--.+.....+..
T Consensus       279 ~G~i~lyDleTgt--~i~~nrIs~~~iF~t~~~~~~~G-i~~Vnr~GqVl~v~v~e~~ivpy  337 (494)
T 1bpo_A          279 YGYIHLYDLETGT--CIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENIIPY  337 (494)
T ss_dssp             TSEEEEEETTTCC--EEEEEECCSSCEEEEEEETTTTE-EEEEETTCEEEEEEECTTTHHHH
T ss_pred             CceEEEEecccce--eeeeecccCCceEEecccCCCCc-EEEEccCceEEEEEEccccchhh
Confidence            9999999999998  44444445567777776666554 45556889888888877666544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.19  E-value=0.029  Score=52.09  Aligned_cols=186  Identities=15%  Similarity=0.134  Sum_probs=94.4

Q ss_pred             CcEEEEEecC----CcEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEECC------CcEEEEeCCCCCCcc
Q 010769          279 RNILASASAD----KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSG  346 (502)
Q Consensus       279 ~~~l~sgs~D----g~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~  346 (502)
                      +.+++.|+.+    ..+.+||+.+.+-...  +........++.+  ++ .+++.|+.+      ..+.+||+.+..-..
T Consensus        56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            4577777754    6788999988754322  2211112222223  34 677777765      458888887643111


Q ss_pred             c--eEeecCCeEEEEeCCCCCCEEEEEeC---------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          347 F--KWAVAADVESLAWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       347 ~--~~~~~~~v~~v~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      .  .........++.+   +..+++.|+.         -..+.+||+.+..       ...+..+...... .++... +
T Consensus       133 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~-~~~~~~-~  200 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET-------WTELCPMIEARKN-HGLVFV-K  200 (306)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTE-------EEEECCCSSCCBS-CEEEEE-T
T ss_pred             CCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCe-------EEECCCccchhhc-ceEEEE-C
Confidence            0  0000111222233   2345666643         3458889887652       0111111111111 122222 2


Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010769          416 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA  483 (502)
Q Consensus       416 ~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d-----g~i~vwd~~~~~  483 (502)
                      + .+++.|+.+     ..+.+||+.+.+...+...........++.+  ++. +++.||.+     ..+.+||+.+.+
T Consensus       201 ~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          201 D-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSI-VYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             T-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTE-EEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             C-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCE-EEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            3 677777653     3588999988764443322222222233333  444 78888854     468999987754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.13  E-value=0.019  Score=53.34  Aligned_cols=186  Identities=16%  Similarity=0.155  Sum_probs=92.9

Q ss_pred             CcEEEEEecC-----CcEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEeCCCCCCcc
Q 010769          279 RNILASASAD-----KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHSG  346 (502)
Q Consensus       279 ~~~l~sgs~D-----g~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~  346 (502)
                      +.+++.|+.+     ..+.+||+.+.+-...  +........++.+  ++ .+++.|+.++     .+.+||+.+..-..
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            4577777654     3588999887753322  2211112222223  34 7777787654     46778876543111


Q ss_pred             c--eEeecCCeEEEEeCCCCCCEEEEEeC-------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769          347 F--KWAVAADVESLAWDPHAEHSFVVSLE-------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       347 ~--~~~~~~~v~~v~~~p~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      .  .........++.+   +..+++.|+.       -..+.+||+.+..-       ..+..+.........+.+  ++ 
T Consensus       139 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~~~~~~--~~-  205 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEW-------TYIAEMSTRRSGAGVGVL--NN-  205 (302)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTEE-------EEECCCSSCCBSCEEEEE--TT-
T ss_pred             cCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcE-------EECCCCccccccccEEEE--CC-
Confidence            0  0000111222233   2346666653       23588899876420       111111111111122222  23 


Q ss_pred             CEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCc
Q 010769          418 NLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIWDTLSDA  483 (502)
Q Consensus       418 ~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg-----~i~vwd~~~~~  483 (502)
                      .+++.|+.+     ..+.+||+.+.+...+............+.+  ++. +++.||.++     .+.+||+.++.
T Consensus       206 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          206 LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCCCe
Confidence            777777754     3689999988765444332221111222222  444 677787653     48999997654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.10  E-value=0.19  Score=47.17  Aligned_cols=151  Identities=9%  Similarity=0.016  Sum_probs=83.4

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEEC--CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDV--AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  342 (502)
                      +...+..+.+.++ +.+++.+...+..+-+|-  .+.+.+.  ......+..+.+.+++ .+ +.++.+|.+++.....+
T Consensus       161 ~~~~~~~~~~~~~-~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g-~~-~~~~~~G~~~~s~~D~G  235 (327)
T 2xbg_A          161 AIGVMRNLNRSPS-GEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDG-RL-WMIVNGGKIAFSDPDNS  235 (327)
T ss_dssp             CCCCEEEEEECTT-SCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTS-CE-EEEETTTEEEEEETTEE
T ss_pred             CCcceEEEEEcCC-CcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCC-CE-EEEeCCceEEEecCCCC
Confidence            4456889999987 446665544333344442  2333332  2345678899998887 54 45566788777632211


Q ss_pred             CCccc-eE---eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe---cCCCCeeEEEEcCC
Q 010769          343 THSGF-KW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPL  415 (502)
Q Consensus       343 ~~~~~-~~---~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~  415 (502)
                      ..-.. ..   .....+.++.+.+.+.  +++++.+|.| ++....+         ..-..+.   .+...+.++.|.+.
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~--~~~~g~~g~i-~~S~DgG---------~tW~~~~~~~~~~~~~~~v~~~~~  303 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNE--VWLAGGAGAL-LCSQDGG---------QTWQQDVDVKKVPSNFYKILFFSP  303 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSC--EEEEESTTCE-EEESSTT---------SSCEECGGGTTSSSCCCEEEEEET
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCE--EEEEeCCCeE-EEeCCCC---------cccEEcCccCCCCCCeEEEEEECC
Confidence            11000 00   1123578888987543  4444557766 3333333         2222222   12456788888753


Q ss_pred             CCCEEEEEeCCCcEEEEEC
Q 010769          416 VPNLLATGSTDKMVKLWDL  434 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~  434 (502)
                        ..+++++.+|.|.-++-
T Consensus       304 --~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          304 --DQGFILGQKGILLRYVT  320 (327)
T ss_dssp             --TEEEEECSTTEEEEECC
T ss_pred             --CceEEEcCCceEEEEcC
Confidence              45667777888776653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.08  E-value=0.048  Score=50.59  Aligned_cols=150  Identities=9%  Similarity=0.050  Sum_probs=75.4

Q ss_pred             CcEEEEEecC------CcEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEEC---------CCcEEEEeCCC
Q 010769          279 RNILASASAD------KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSF---------DRSVVMKDARI  341 (502)
Q Consensus       279 ~~~l~sgs~D------g~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~---------dg~i~vwd~~~  341 (502)
                      +.+++.|+.+      ..+.+||+.+.+-...  +........++.+  ++ .+++.|+.         -..+.+||+.+
T Consensus       102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC-EEEEECCCCCCCCcccccceEEEeCCCC
Confidence            4577777765      4689999988754332  2111111222222  34 66777664         34578888876


Q ss_pred             CCCccce--EeecCCeEEEEeCCCCCCEEEEEeCC-----CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769          342 STHSGFK--WAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       342 ~~~~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      ..-....  ........++.+   +..+++.|+.+     ..+.+||+.+..       ...+..+........++.+  
T Consensus       179 ~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--  246 (306)
T 3ii7_A          179 ETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNE-------WKMVSPMPWKGVTVKCAAV--  246 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTE-------EEECCCCSCCBSCCEEEEE--
T ss_pred             CeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCc-------EEECCCCCCCccceeEEEE--
Confidence            5321100  000111222333   23466666543     358889987642       0111111111112223333  


Q ss_pred             CCCCEEEEEeCC-----CcEEEEECCCCCeeEEEE
Q 010769          415 LVPNLLATGSTD-----KMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       415 ~~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~  444 (502)
                      ++ .+++.|+.+     ..+.+||+.+.+...+..
T Consensus       247 ~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~  280 (306)
T 3ii7_A          247 GS-IVYVLAGFQGVGRLGHILEYNTETDKWVANSK  280 (306)
T ss_dssp             TT-EEEEEECBCSSSBCCEEEEEETTTTEEEEEEE
T ss_pred             CC-EEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCC
Confidence            23 777888754     458899998877544433

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.07  E-value=0.56  Score=51.99  Aligned_cols=192  Identities=16%  Similarity=0.137  Sum_probs=95.1

Q ss_pred             eccccCCCcceeeeecCCCCCCCCCCEEEEecC-CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccC
Q 010769          185 HHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKG  263 (502)
Q Consensus       185 ~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  263 (502)
                      ....++.-+.|+...+.. .....++++|+|.. |++|+|+.++..+.+... .++.                      .
T Consensus       548 ~~~~l~~evscl~i~~~~-~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~-~L~~----------------------~  603 (1158)
T 3ei3_A          548 SHTEMEHEVACLDITPLG-DSNGLSPLCAIGLWTDISARILKLPSFELLHKE-MLGG----------------------E  603 (1158)
T ss_dssp             EEEECSSCEEEEECCCCS-SSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE-ECCS----------------------S
T ss_pred             cccCCCCceEEEEeecCC-CCcccccEEEEEECCCCEEEEEECCCCCeEEEE-ECCC----------------------C
Confidence            334456666777653221 11123689999997 999999999753222110 0100                      0


Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECC--CCeeeE---EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVA--AGKCNL---TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~--~~~~~~---~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  338 (502)
                      .-...|.-+.+  .+..+|..|-.||.+.-+.+.  +|....   .+-+ +.++.-..+...+...+++.+ +....+|-
T Consensus       604 ~~p~si~l~~~--~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~  679 (1158)
T 3ei3_A          604 IIPRSILMTTF--ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYS  679 (1158)
T ss_dssp             CCEEEEEEEEE--TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEE
T ss_pred             CCCcEEEEEEe--CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEE
Confidence            01122333334  234688899999998666553  444321   1222 345554445444433334333 44444444


Q ss_pred             CCCCCCccceEeec-CCe-EEEEeCCCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          339 ARISTHSGFKWAVA-ADV-ESLAWDPHA-EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       339 ~~~~~~~~~~~~~~-~~v-~~v~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      -+ ++ .. ..... ..+ ....|+... +.-++..+ ++.++|..+....       ...+.++. -...+..++++|.
T Consensus       680 ~~-~~-l~-~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~-------~~~~~~ip-L~~Tprri~y~~~  747 (1158)
T 3ei3_A          680 SN-HK-LV-FSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ-------KLHIRTVP-LYESPRKICYQEV  747 (1158)
T ss_dssp             SS-SS-EE-EEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS-------SEEEEEEE-CSSEEEEEEEEGG
T ss_pred             cC-Cc-eE-EeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccC-------CeeEEEEe-CCCCceEEEEcCC
Confidence            33 11 11 11211 123 233454321 23344444 4569998876541       12333333 2356778888886


Q ss_pred             C
Q 010769          416 V  416 (502)
Q Consensus       416 ~  416 (502)
                      .
T Consensus       748 ~  748 (1158)
T 3ei3_A          748 S  748 (1158)
T ss_dssp             G
T ss_pred             C
Confidence            5

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.07  E-value=0.016  Score=53.96  Aligned_cols=186  Identities=11%  Similarity=0.116  Sum_probs=92.6

Q ss_pred             CcEEEEEec----C-----CcEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEECC-----CcEEEEeCCCC
Q 010769          279 RNILASASA----D-----KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARIS  342 (502)
Q Consensus       279 ~~~l~sgs~----D-----g~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~  342 (502)
                      +.+++.|+.    +     ..+.+||+.+.+-...  +........++.+  ++ .+++.|+.+     ..+.+||+.+.
T Consensus        71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTT
T ss_pred             CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCC
Confidence            446666665    2     4688999887753322  2211112222333  34 677777644     35788888754


Q ss_pred             CCccc--eEeecCCeEEEEeCCCCCCEEEEEeCC-----CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          343 THSGF--KWAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       343 ~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                      +-...  .........++.+   +..+++.|+.+     ..+.+||+.+..-       ..+..+......-..+.+  +
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~~~~~~--~  215 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEW-------RMITAMNTIRSGAGVCVL--H  215 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEE-------EECCCCSSCCBSCEEEEE--T
T ss_pred             eEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeE-------eeCCCCCCccccceEEEE--C
Confidence            31110  0001111223333   23466666644     4588898876421       111111111111222333  2


Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010769          416 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA  483 (502)
Q Consensus       416 ~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d-----g~i~vwd~~~~~  483 (502)
                      + .+++.|+.+     ..+.+||+.+.+...+............+.+  ++. +++.||.+     ..+.+||+.+.+
T Consensus       216 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          216 N-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             T-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             C-EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCCCE
Confidence            3 677777664     4599999988764433322222112222222  444 67777754     358899987654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.02  E-value=0.25  Score=47.00  Aligned_cols=198  Identities=12%  Similarity=0.073  Sum_probs=102.4

Q ss_pred             cceeeEEecCC---CCcEEEEEec---C----CcEEEEECCCC-------eee-EEecc-CCCCeEEEEEcCCCCcEEEE
Q 010769          267 DSVLGLAWNKE---FRNILASASA---D----KQVKIWDVAAG-------KCN-LTLEH-HTDKVQAVAWNHHSPQILLS  327 (502)
Q Consensus       267 ~~V~~l~~~~~---~~~~l~sgs~---D----g~v~vwd~~~~-------~~~-~~~~~-h~~~v~~l~~~~~~~~~l~s  327 (502)
                      .....|+|+|+   ++.+.++-+.   +    +.|..|++...       +.+ ..+.. .......|.|.|+| .++++
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt  151 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYIT  151 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEE
Confidence            56889999997   4544444432   3    56777877644       111 11221 11124679999999 66665


Q ss_pred             EEC-------------CCcEEEEeCCCCCC------ccceEee-cCCeEEEEeCCCCCCEEEEEeCCC---eEEEEECCC
Q 010769          328 GSF-------------DRSVVMKDARISTH------SGFKWAV-AADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRT  384 (502)
Q Consensus       328 ~~~-------------dg~i~vwd~~~~~~------~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~dg---~i~i~d~~~  384 (502)
                      .+.             .|.|.-++....-.      ....+.. ......++|+|....++++-...+   .|.+..  .
T Consensus       152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~  229 (354)
T 3a9g_A          152 TGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--K  229 (354)
T ss_dssp             CCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--T
T ss_pred             ECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--C
Confidence            432             24565555543200      0112221 123567899994443444433222   243332  2


Q ss_pred             CCC---------CCCCCCCCccEEEecCCCCeeEEEEc-------CCCCCEEEEEeCCCcEEEEECCCC-CeeEEEEe-c
Q 010769          385 AKS---------DPDSTSQQSSFTLHAHDKAVCTISYN-------PLVPNLLATGSTDKMVKLWDLSNN-QPSCIASR-N  446 (502)
Q Consensus       385 ~~~---------~~~~~~~~~~~~~~~h~~~v~~l~~s-------p~~~~~l~t~s~dg~i~vwd~~~~-~~~~~~~~-~  446 (502)
                      +..         ........++..+.........++|.       .++ .++++....+.|...++... +......+ .
T Consensus       230 G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~  308 (354)
T 3a9g_A          230 GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFK  308 (354)
T ss_dssp             TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECT
T ss_pred             CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeecc
Confidence            110         00000013444442223457788884       344 66666666778888888753 22112222 2


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEe
Q 010769          447 PKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~llasg~  469 (502)
                      .....+..+++.|||. |+++..
T Consensus       309 ~~~~rp~~v~~~pDG~-lyv~~~  330 (354)
T 3a9g_A          309 NVFGRLRDVVIDDDGG-ILISTS  330 (354)
T ss_dssp             TTSCCEEEEEECTTSC-EEEEEC
T ss_pred             CCCCCeeEEEECCCCc-EEEEEe
Confidence            2346789999999997 565543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.94  E-value=0.26  Score=54.63  Aligned_cols=244  Identities=12%  Similarity=0.157  Sum_probs=137.4

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|..+.||.=. ..++.|||+++...+..                         +   .....|.-=.|-..  +.|+-.
T Consensus        74 nP~~~iiALra-g~~lQiFnl~~k~klks-------------------------~---~~~e~VvfWkWis~--~~l~lV  122 (1630)
T 1xi4_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKA-------------------------H---TMTDDVTFWKWISL--NTVALV  122 (1630)
T ss_pred             CCCcceEEEec-CCeEEEeehHHhhhhcc-------------------------c---ccCCCceEEEecCC--CeeEEE
Confidence            67788888765 68999999975222211                         1   12346777778665  245444


Q ss_pred             ecCCcEEEEECCC-CeeeEEeccC----CCCeEEEEEcCCCCcEEEEEE------CCCcEEEEeCCCCCCccceEeecCC
Q 010769          286 SADKQVKIWDVAA-GKCNLTLEHH----TDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       286 s~Dg~v~vwd~~~-~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~  354 (502)
                      +. ..|.-|++.. ..+++.|..|    ...|..-..+++..-++++|-      -.|.+.+|.+....... ..+|.+.
T Consensus       123 T~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~-iegha~~  200 (1630)
T 1xi4_A          123 TD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAAS  200 (1630)
T ss_pred             cC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh-hhHhHhh
Confidence            43 5799999964 3455555444    456777777888744444443      35788899887654322 2333332


Q ss_pred             eEEEEeC--CCCCCEEEEEe---CCCeEEEEECCCC-CCCCCCCCCCccEEE---ecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769          355 VESLAWD--PHAEHSFVVSL---EDGTIKGFDIRTA-KSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       355 v~~v~~~--p~~~~~l~~~~---~dg~i~i~d~~~~-~~~~~~~~~~~~~~~---~~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ...+...  +....+|+.+.   ..+.+++.++... ...... ..+.+..+   .....-..++..++.. .++...+.
T Consensus       201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f-~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk  278 (1630)
T 1xi4_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-PKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITK  278 (1630)
T ss_pred             hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC-ccccccccCCcccccCcceEEEecccc-CEEEEEec
Confidence            2222221  11122333222   1368999998654 111110 01111111   1123344567778765 78888888


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      -|.|.+||+.++..  ++.-.-...+|+..+.++.... +++....|.|.--.+.....+.-
T Consensus       279 ~G~~~~~d~~t~~~--i~~~ris~~~iF~~~~~~~~~g-~~~vnr~G~vl~v~v~~~~iv~y  337 (1630)
T 1xi4_A          279 YGYIHLYDLETGTC--IYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENIIPY  337 (1630)
T ss_pred             CceEEEEecccchh--hhhccccCCceEEeccCCCCCc-eEEEcCCceEEEEEEccchhhhh
Confidence            99999999999873  4333333455665555544333 44445777777666666555443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.87  E-value=0.13  Score=48.86  Aligned_cols=183  Identities=13%  Similarity=0.093  Sum_probs=102.0

Q ss_pred             cceeeEEecC--CCCcEEEEEec---CCcEEEEECCCC--e--eeEEeccC-CCCeEEEEEcCCCCcEEEEEEC------
Q 010769          267 DSVLGLAWNK--EFRNILASASA---DKQVKIWDVAAG--K--CNLTLEHH-TDKVQAVAWNHHSPQILLSGSF------  330 (502)
Q Consensus       267 ~~V~~l~~~~--~~~~~l~sgs~---Dg~v~vwd~~~~--~--~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~------  330 (502)
                      .....|.+.+  ++..+|+.+..   ..+|.+|++...  .  .+.++.+. -...+.+.+.++| .++++...      
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~  190 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPY  190 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcc
Confidence            4566677655  33334544422   467888877543  2  23344332 2457889999998 66666531      


Q ss_pred             -----------CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE
Q 010769          331 -----------DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT  399 (502)
Q Consensus       331 -----------dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  399 (502)
                                 .|.|..++.  .+ .......-...+.++|+|++..++++-+..+.|..|++.....      ......
T Consensus       191 ~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~------l~~~~~  261 (355)
T 3sre_A          191 LKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT------LTPLRV  261 (355)
T ss_dssp             HHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC------EEEEEE
T ss_pred             cccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc------EecCEE
Confidence                       244555554  22 2222333456789999999886666777889999999874210      011122


Q ss_pred             EecCCCCeeEEEEcC-CCCCEEEEEeCC-CcEEEEECCCCCeeEEEEecC---CCCCEEEEEEcCCCC
Q 010769          400 LHAHDKAVCTISYNP-LVPNLLATGSTD-KMVKLWDLSNNQPSCIASRNP---KAGAVFSVAFSEDSP  462 (502)
Q Consensus       400 ~~~h~~~v~~l~~sp-~~~~~l~t~s~d-g~i~vwd~~~~~~~~~~~~~~---~~~~v~~~~~spd~~  462 (502)
                      + ...+..-.+++.+ +| ++.+++..+ +.|..|+.....+..+..+..   ....+..+ |..+|+
T Consensus       262 ~-~~~g~PDGi~vD~e~G-~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~  326 (355)
T 3sre_A          262 L-SFDTLVDNISVDPVTG-DLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGT  326 (355)
T ss_dssp             E-ECSSEEEEEEECTTTC-CEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSS
T ss_pred             E-eCCCCCceEEEeCCCC-cEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCC
Confidence            2 2345678889998 57 666666544 345455544323333443332   23344444 444665

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.74  E-value=0.3  Score=46.18  Aligned_cols=187  Identities=6%  Similarity=-0.030  Sum_probs=104.4

Q ss_pred             ceeeEEecCCCCcEEEEEe-------------cCCcEEEEECCCC--eee-EEecc-----CCCCeEEEEEcC--CCCcE
Q 010769          268 SVLGLAWNKEFRNILASAS-------------ADKQVKIWDVAAG--KCN-LTLEH-----HTDKVQAVAWNH--HSPQI  324 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs-------------~Dg~v~vwd~~~~--~~~-~~~~~-----h~~~v~~l~~~~--~~~~~  324 (502)
                      ..-.+...|+ + ++++++             .+|.|.++|+.+.  +.. ..+.+     ..-....+.+.+  ++..+
T Consensus        51 G~EDi~~~~~-G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           51 GSEDLEILPN-G-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CCCEEEECTT-S-EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CcceeEEcCC-C-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            3456667776 4 444444             6899999998742  221 12222     223667777755  34334


Q ss_pred             EEEEEC---CCcEEEEeCCCCCCccceE-ee----cCCeEEEEeCCCCCCEEEEEe-----------------CCCeEEE
Q 010769          325 LLSGSF---DRSVVMKDARISTHSGFKW-AV----AADVESLAWDPHAEHSFVVSL-----------------EDGTIKG  379 (502)
Q Consensus       325 l~s~~~---dg~i~vwd~~~~~~~~~~~-~~----~~~v~~v~~~p~~~~~l~~~~-----------------~dg~i~i  379 (502)
                      |+++..   +.+|.+|++.......... ..    -...+.+.+.+++. ++++..                 ..|.|..
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEE
Confidence            544433   4678888776543322111 11    23467888888764 333332                 1245555


Q ss_pred             EECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC-CCeeEEEEecCCCCCEEEEEEc
Q 010769          380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFS  458 (502)
Q Consensus       380 ~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~s  458 (502)
                      ++..           . +..+...-...+.++|+|++..++++-+..+.|..|++.. +.......+. ..+..-.+++.
T Consensus       208 ~d~~-----------~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD  274 (355)
T 3sre_A          208 YSPN-----------D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVD  274 (355)
T ss_dssp             ECTT-----------C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEEC
T ss_pred             EECC-----------e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEe
Confidence            5542           1 1222222345689999999855556666788999999864 3332222232 24667889999


Q ss_pred             C-CCCcEEEEEeCC
Q 010769          459 E-DSPFVLAIGGSK  471 (502)
Q Consensus       459 p-d~~~llasg~~d  471 (502)
                      + +|. +.+++..+
T Consensus       275 ~e~G~-lwva~~~~  287 (355)
T 3sre_A          275 PVTGD-LWVGCHPN  287 (355)
T ss_dssp             TTTCC-EEEEEESC
T ss_pred             CCCCc-EEEEecCC
Confidence            9 588 45545433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.65  E-value=0.1  Score=48.67  Aligned_cols=186  Identities=10%  Similarity=0.044  Sum_probs=90.5

Q ss_pred             CcEEEEEec----C-------CcEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEECC--------CcEEEE
Q 010769          279 RNILASASA----D-------KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD--------RSVVMK  337 (502)
Q Consensus       279 ~~~l~sgs~----D-------g~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~vw  337 (502)
                      +.+++.|+.    +       ..+.+||+.+++-...  +.........+.+  ++ .+++.|+.+        ..+.+|
T Consensus        46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~~~~  122 (315)
T 4asc_A           46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LN-SIYVVGGREIKDGERCLDSVMCY  122 (315)
T ss_dssp             CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TT-EEEEECCEESSTTCCBCCCEEEE
T ss_pred             CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CC-EEEEEeCCcCCCCCcccceEEEE
Confidence            457777763    1       1277889887754221  1111111122222  33 677777742        458888


Q ss_pred             eCCCCCCccc--eEeecCCeEEEEeCCCCCCEEEEEeC------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeE
Q 010769          338 DARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  409 (502)
Q Consensus       338 d~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~  409 (502)
                      |+.+.+-...  .........++.+   +..+++.|+.      -..+.+||..+..-       ..+..+......-.+
T Consensus       123 d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~~~  192 (315)
T 4asc_A          123 DRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFEW-------KELAPMQTARSLFGA  192 (315)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTEE-------EECCCCSSCCBSCEE
T ss_pred             CCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCeE-------EECCCCCCchhceEE
Confidence            8876431110  0000111222222   2346666665      24688899876420       111111111111122


Q ss_pred             EEEcCCCCCEEEEEeCCC-----cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC------------
Q 010769          410 ISYNPLVPNLLATGSTDK-----MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------------  472 (502)
Q Consensus       410 l~~sp~~~~~l~t~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg------------  472 (502)
                      +.+  ++ .+++.|+.++     .+.+||+.+.+...+............+.+  ++. +++.||.++            
T Consensus       193 ~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~~~~~~~~  266 (315)
T 4asc_A          193 TVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGT-LYAIGGFATLETESGELVPTE  266 (315)
T ss_dssp             EEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEEEEECTTSCEEEEE
T ss_pred             EEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCE-EEEECCccccCcCCccccccc
Confidence            222  33 7777777654     488999988865444332222222222332  444 677787642            


Q ss_pred             --cEEEEECCCCc
Q 010769          473 --KLEIWDTLSDA  483 (502)
Q Consensus       473 --~i~vwd~~~~~  483 (502)
                        .+.+||+.+.+
T Consensus       267 ~~~v~~yd~~~~~  279 (315)
T 4asc_A          267 LNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEEEEETTTTE
T ss_pred             cCcEEEecCCCCh
Confidence              47788987653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.61  E-value=0.24  Score=45.91  Aligned_cols=148  Identities=12%  Similarity=0.122  Sum_probs=73.8

Q ss_pred             CcEEEEEecC-----CcEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEECC-----CcEEEEeCCCCCCcc
Q 010769          279 RNILASASAD-----KQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMKDARISTHSG  346 (502)
Q Consensus       279 ~~~l~sgs~D-----g~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~  346 (502)
                      +.+++.|+.+     ..+.+||+.+.+-...  +........++.+  ++ .+++.|+.+     ..+.+||+.+..-..
T Consensus       122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            4466666543     4688999887653322  2211112222333  34 677777764     458888887543111


Q ss_pred             ce--EeecCCeEEEEeCCCCCCEEEEEeCC-----CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCE
Q 010769          347 FK--WAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       347 ~~--~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~  419 (502)
                      ..  ........++.+   +..+++.|+.+     ..+.+||+.+..-       ..+..+.........+.+  ++ .+
T Consensus       199 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-------~~~~~~p~~r~~~~~~~~--~~-~i  265 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETW-------TFVAPMKHRRSALGITVH--QG-RI  265 (308)
T ss_dssp             CCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEE-------EECCCCSSCCBSCEEEEE--TT-EE
T ss_pred             CCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcE-------EECCCCCCCccceEEEEE--CC-EE
Confidence            00  001111223333   24467777654     4688999876420       111111111111122222  23 67


Q ss_pred             EEEEeCC-----CcEEEEECCCCCeeEE
Q 010769          420 LATGSTD-----KMVKLWDLSNNQPSCI  442 (502)
Q Consensus       420 l~t~s~d-----g~i~vwd~~~~~~~~~  442 (502)
                      ++.|+.+     ..+.+||+.+.+...+
T Consensus       266 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~  293 (308)
T 1zgk_A          266 YVLGGYDGHTFLDSVECYDPDTDTWSEV  293 (308)
T ss_dssp             EEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             EEEcCcCCCcccceEEEEcCCCCEEeec
Confidence            7777754     3478889888765444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.46  E-value=0.21  Score=48.02  Aligned_cols=142  Identities=17%  Similarity=0.228  Sum_probs=87.9

Q ss_pred             CCcEEEEECCCCeeeEEeccC----CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-----------ceEe--
Q 010769          288 DKQVKIWDVAAGKCNLTLEHH----TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-----------FKWA--  350 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----------~~~~--  350 (502)
                      ++.||.-++.....-+.+...    -..|..+..+|.| .+|+..+ +..|.|..+..+....           ..+.  
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence            467887787744333333321    2357889999999 7666654 5678888776322110           0111  


Q ss_pred             -----ecCCeEEEEeCCCCCC--EEEEEeCCCeEEEEECCCCCCCCC-CCCCCccEEEecCCCCeeEEEEcCCCCCEEEE
Q 010769          351 -----VAADVESLAWDPHAEH--SFVVSLEDGTIKGFDIRTAKSDPD-STSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       351 -----~~~~v~~v~~~p~~~~--~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                           ...+|..+.|||-+..  .+++-+.|+.|++||+......+. .......+.+......|.+++|.+.+ -.|..
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~-lTLYv  196 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDG-LTLYC  196 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTS-SCEEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCC-cEEEE
Confidence                 2467999999997543  899999999999999987421111 00001112223344678999999965 66666


Q ss_pred             Ee--CCCcEEEE
Q 010769          423 GS--TDKMVKLW  432 (502)
Q Consensus       423 ~s--~dg~i~vw  432 (502)
                      .+  ..|-|+-.
T Consensus       197 l~~t~~GDIYAl  208 (452)
T 3pbp_A          197 LNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EecCCCCCEEEE
Confidence            44  77777543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.44  E-value=0.46  Score=43.67  Aligned_cols=145  Identities=11%  Similarity=0.103  Sum_probs=71.6

Q ss_pred             CcEEEEEecCC-----cEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEECC-------CcEEEEeCCCCCC
Q 010769          279 RNILASASADK-----QVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD-------RSVVMKDARISTH  344 (502)
Q Consensus       279 ~~~l~sgs~Dg-----~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~  344 (502)
                      +.+++.|+.++     .+.+||+.+.+-...  +........++.+  ++ .+++.|+.+       ..+.+||+.+..-
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            45777777553     578899887654322  2211112222222  33 677777643       3578888876431


Q ss_pred             ccc--eEeecCCeEEEEeCCCCCCEEEEEeCC-----CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769          345 SGF--KWAVAADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       345 ~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      ...  .........++.+   +..+++.|+.+     ..+.+||+.+..-       ..+..+.........+.+  ++ 
T Consensus       186 ~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-------~~~~~~~~~r~~~~~~~~--~~-  252 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAW-------RQVADMNMCRRNAGVCAV--NG-  252 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEE-------EEECCCSSCCBSCEEEEE--TT-
T ss_pred             EECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCE-------eeCCCCCCccccCeEEEE--CC-
Confidence            110  0000111223333   24467777654     3688999876420       111111111111122222  33 


Q ss_pred             CEEEEEeCCC-----cEEEEECCCCCe
Q 010769          418 NLLATGSTDK-----MVKLWDLSNNQP  439 (502)
Q Consensus       418 ~~l~t~s~dg-----~i~vwd~~~~~~  439 (502)
                      .+++.|+.++     .+.+||+.+.+.
T Consensus       253 ~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          253 LLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             EEEEECCcCCCcccccEEEEcCCCCeE
Confidence            6777777653     488999988763

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.37  E-value=0.69  Score=43.58  Aligned_cols=248  Identities=13%  Similarity=0.084  Sum_probs=125.0

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      |..++|       .|+|.++++--..|.|++++...... .+...                    ............+.|
T Consensus        34 P~~ia~-------~pdG~llVter~~G~I~~v~~~~g~~-~~v~~--------------------~~~v~~~g~~GllGi   85 (347)
T 3das_A           34 PWGLAP-------LPGGDLLVSSRDEATITRVDAKTGRK-TELGE--------------------VPGVSPSGEGGLLGI   85 (347)
T ss_dssp             EEEEEE-------CTTSCEEEEETTTCEEEEECTTTCCE-EEEEE--------------------CTTCCCBTTBSEEEE
T ss_pred             ceEEEE-------cCCCcEEEEEecCCEEEEEECCCCcE-eeecc--------------------cCceeecCCCCceee
Confidence            455655       68898777776589999887543211 01000                    000112334678999


Q ss_pred             EecCC---CCcEEEEE--ecCCcEEEEECCCC----------eee-EEec-cCCCCeEEEEEcCCCCcEEEEEEC-----
Q 010769          273 AWNKE---FRNILASA--SADKQVKIWDVAAG----------KCN-LTLE-HHTDKVQAVAWNHHSPQILLSGSF-----  330 (502)
Q Consensus       273 ~~~~~---~~~~l~sg--s~Dg~v~vwd~~~~----------~~~-~~~~-~h~~~v~~l~~~~~~~~~l~s~~~-----  330 (502)
                      +++|+   ++.+.++-  ..++.|.-|.+..+          +.+ ..+. ........|.|.|+| .++++.+.     
T Consensus        86 a~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~  164 (347)
T 3das_A           86 ALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTG  164 (347)
T ss_dssp             EECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGG
T ss_pred             EeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCc
Confidence            99985   24333322  23456666665541          111 1221 111124569999999 66666542     


Q ss_pred             --------CCcEEEEeCCCCCC------ccceEeec-CCeEEEEeCCCCCCEEEEE-eCCCeEEEEECCCCCCC------
Q 010769          331 --------DRSVVMKDARISTH------SGFKWAVA-ADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSD------  388 (502)
Q Consensus       331 --------dg~i~vwd~~~~~~------~~~~~~~~-~~v~~v~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~------  388 (502)
                              .|.|.-.+....-.      ....+... .....++|+|++. ++++- +.++.=.+.-+..+...      
T Consensus       165 ~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~  243 (347)
T 3das_A          165 LSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAE  243 (347)
T ss_dssp             GTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCC
T ss_pred             cccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCccc
Confidence                    34555555442200      01122211 2356789999654 33332 23332233323322110      


Q ss_pred             ---CCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEEEecCCCCCEEEEEEcCCCCc
Q 010769          389 ---PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIASRNPKAGAVFSVAFSEDSPF  463 (502)
Q Consensus       389 ---~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~spd~~~  463 (502)
                         .......++..+..+....+.++|.. + .+++..-..+.|....+.....  .....+....+.+..++..|||..
T Consensus       244 g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~l  321 (347)
T 3das_A          244 GKGGGSGFHDPVAQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKL  321 (347)
T ss_dssp             SSCCCTTCCCCSEEECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEE
T ss_pred             CCCCCccccCCcEecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcE
Confidence               00111244555554444667888874 3 5666655566676666654431  112223344578999999999974


Q ss_pred             EEEEEeCCC
Q 010769          464 VLAIGGSKG  472 (502)
Q Consensus       464 llasg~~dg  472 (502)
                      .+++...+|
T Consensus       322 yv~td~~~g  330 (347)
T 3das_A          322 WLVTSNTDG  330 (347)
T ss_dssp             EEEECTTSS
T ss_pred             EEEEcCCCC
Confidence            333333343

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.23  E-value=0.4  Score=45.45  Aligned_cols=64  Identities=13%  Similarity=0.035  Sum_probs=33.1

Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      ....++|. .+ .++++....+.|...++........   ......+......+..+++.|+| .++++.
T Consensus       269 ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~---~~~~~~~~~~~~rp~~v~~~pdG-~lyv~~  332 (352)
T 2ism_A          269 PPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWR---VLRVETALSGFGRLREVQVGPDG-ALYVTT  332 (352)
T ss_dssp             CEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEE---EEEEEEEEESSCCEEEEEECTTS-CEEEEE
T ss_pred             CCcceEEE-CC-EEEEEECCCCEEEEEEECCCCccee---ecchheecccCCCeeEEEECCCC-cEEEEE
Confidence            34566663 23 3566666667788777764310000   00011221223568889999988 554443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.14  E-value=0.16  Score=44.18  Aligned_cols=185  Identities=8%  Similarity=0.023  Sum_probs=94.6

Q ss_pred             CcEEEEEecCCcEEEEECCCCe------eeEEecc-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc----
Q 010769          279 RNILASASADKQVKIWDVAAGK------CNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----  347 (502)
Q Consensus       279 ~~~l~sgs~Dg~v~vwd~~~~~------~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----  347 (502)
                      ..+|+....| +|+.=....+.      ...++.. -=..+..++|+|++ .+.++  .+|.+.-.+..+......    
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccc
Confidence            4467777777 66655444443      1222211 12377899999977 54444  678777666544322211    


Q ss_pred             -eEee--cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCcc-EEEec-CCCCeeEEEEcCCCCCEEEE
Q 010769          348 -KWAV--AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS-FTLHA-HDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       348 -~~~~--~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~-h~~~v~~l~~sp~~~~~l~t  422 (502)
                       ....  -....++.|.|++.  |+++ .||.|+-++-.+.....    ..-. ..+.. -=..+..|.|.|+| .+.+.
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~--LYav-~dG~iyr~~pP~~~~~~----Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav  151 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGY--LYAV-SKDKLYKASPPQSDTDN----WIARATEVGSGGWSGFKFLFFHPNG-YLYAV  151 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSC--EEEE-ETTEEEEESCCCSTTCC----HHHHSEEEECSSGGGEEEEEECTTS-CEEEE
T ss_pred             cEecccccccceEEEECCCCC--EEEe-CCCEEEEeCCCcCCCCc----eeccccEeccCCCCceEEEEECCCc-eEEEE
Confidence             1110  01147889999764  4444 56999877654321100    0000 11111 11467999999987 55444


Q ss_pred             EeCCCcEEEEECCCCC----e-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          423 GSTDKMVKLWDLSNNQ----P-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~----~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      .  |+.++-+......    . .........-.....+.|+|++. ++++.  +|  ++|.....
T Consensus       152 ~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~-l~~v~--~g--~~Y~~~~p  209 (236)
T 1tl2_A          152 H--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GG--KFYEDYPP  209 (236)
T ss_dssp             E--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TT--EEEEESCC
T ss_pred             e--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc-EEEEe--CC--eEEecCCc
Confidence            4  7775443332211    0 00111112222345577999997 45544  66  45554433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.09  E-value=0.58  Score=44.97  Aligned_cols=121  Identities=13%  Similarity=0.200  Sum_probs=74.8

Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC-C--CCCccEEEec------CCCCeeEEEEcCCCC--CEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-T--SQQSSFTLHA------HDKAVCTISYNPLVP--NLLAT  422 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~--~~~~~~~~~~------h~~~v~~l~~sp~~~--~~l~t  422 (502)
                      .+..+..+|+|. +++.. .+..|.+..+..+...... .  .....+.+..      ...+|..+.|+|-+.  ..|++
T Consensus        67 ~i~qlvlSpsG~-lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSGD-LLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTSS-EEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCCC-EEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            577899999876 44444 4668999988843211110 0  0011223322      257799999999753  48999


Q ss_pred             EeCCCcEEEEECCCCCeeEE--------EEecCCCCCEEEEEEcCCCCcEEEEEe--CCCcEEEE
Q 010769          423 GSTDKMVKLWDLSNNQPSCI--------ASRNPKAGAVFSVAFSEDSPFVLAIGG--SKGKLEIW  477 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~--------~~~~~~~~~v~~~~~spd~~~llasg~--~dg~i~vw  477 (502)
                      -..|+.|++||+........        +........|.+++|.+++- .|....  ..|.|+-.
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~l-TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGL-TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSS-CEEEEECTTSCEEEEE
T ss_pred             EecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCc-EEEEEecCCCCCEEEE
Confidence            99999999999986321111        12222335688999988664 455544  56666543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.05  E-value=0.52  Score=52.32  Aligned_cols=197  Identities=11%  Similarity=0.122  Sum_probs=118.9

Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce-Eee
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAV  351 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~  351 (502)
                      -.||. .++||.=+ ..++.|+|+.+...+.++.. ...|.-=.|-...  .|+..+ +..|..|++.....+... ..+
T Consensus        72 IMnP~-~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           72 IMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             ccCCC-cceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC--eeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            45777 55665544 68999999999888877764 4567666776554  343333 467999999753333211 122


Q ss_pred             ----cCCeEEEEeCCCCCCEEEEEe------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEc--CCCCCE
Q 010769          352 ----AADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN--PLVPNL  419 (502)
Q Consensus       352 ----~~~v~~v~~~p~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~~~~~  419 (502)
                          ...|..-..+++...++++|-      -.|.+.+|.+...          ....+.+|...-..+...  +....+
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~----------~sQ~iegha~~F~~~~~~~~~~~~~l  215 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK----------VSQPIEGHAASFAQFKMEGNAEESTL  215 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc----------cchhhhHhHhhhheeccCCCCCCceE
Confidence                456777778888777777664      4578899988754          333445554433333322  111123


Q ss_pred             EEEEeC---CCcEEEEECCCC---CeeE----E-EEec--CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          420 LATGST---DKMVKLWDLSNN---QPSC----I-ASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       420 l~t~s~---dg~i~vwd~~~~---~~~~----~-~~~~--~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      ++.+..   .+.++|-++...   .+..    + ..++  .......++..++... ++..-+.-|.|.+||+.|+.++.
T Consensus       216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             EEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhh
Confidence            332222   267888888543   1100    0 0111  1233455777888776 56677889999999999999873

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.91  E-value=0.29  Score=46.37  Aligned_cols=57  Identities=11%  Similarity=0.034  Sum_probs=31.1

Q ss_pred             cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC------cEEEEECCCCccccc
Q 010769          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------KLEIWDTLSDAGISN  487 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg------~i~vwd~~~~~~~~~  487 (502)
                      .+.+||+.+.+...+.........-.++.  -++. +++.||.++      .|.++++.+++.+..
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNS-LLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEE--ETTE-EEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEE--eCCE-EEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            47899999887655544443322222222  3455 678888653      366668888776643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.68  E-value=1.3  Score=40.88  Aligned_cols=101  Identities=10%  Similarity=0.067  Sum_probs=51.8

Q ss_pred             CcEEEEEecC--------CcEEEEECCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEEC-C-----CcEEEEeCCCC
Q 010769          279 RNILASASAD--------KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSF-D-----RSVVMKDARIS  342 (502)
Q Consensus       279 ~~~l~sgs~D--------g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~-d-----g~i~vwd~~~~  342 (502)
                      +.+++.|+.+        ..+.+||+.+.+-..  .+........++.  .++ .+++.|+. +     ..+.+||+.+.
T Consensus        99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMD-LVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT-EEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECC-EEEEEeCCCCCCcccceEEEEeCCCC
Confidence            4566666642        458999998765322  2221111122222  233 67777776 2     46888888764


Q ss_pred             CCccce--EeecCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEECCCC
Q 010769          343 THSGFK--WAVAADVESLAWDPHAEHSFVVSLEDG-----TIKGFDIRTA  385 (502)
Q Consensus       343 ~~~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~dg-----~i~i~d~~~~  385 (502)
                      +-....  ........++.+   +..+++.|+.++     .+.+||+.+.
T Consensus       176 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          176 EWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             eEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCC
Confidence            311100  000111223333   234677776544     5888888764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.64  E-value=0.51  Score=43.79  Aligned_cols=185  Identities=10%  Similarity=0.092  Sum_probs=88.2

Q ss_pred             CcEEEEEec----CC-------cEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEECC-------CcEEEEe
Q 010769          279 RNILASASA----DK-------QVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFD-------RSVVMKD  338 (502)
Q Consensus       279 ~~~l~sgs~----Dg-------~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~d-------g~i~vwd  338 (502)
                      +.+++.|+.    ++       .+.+||+.+.+-...  +.........+.+  ++ .+++.|+.+       ..+.+||
T Consensus        57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd  133 (318)
T 2woz_A           57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DD-KIYVVAGKDLQTEASLDSVLCYD  133 (318)
T ss_dssp             SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TT-EEEEEEEEBTTTCCEEEEEEEEE
T ss_pred             CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CC-EEEEEcCccCCCCcccceEEEEe
Confidence            457777773    12       277888877654322  2111112222223  34 677777764       2477788


Q ss_pred             CCCCCCccceEeec---CCeEEEEeCCCCCCEEEEEeC------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeE
Q 010769          339 ARISTHSGFKWAVA---ADVESLAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT  409 (502)
Q Consensus       339 ~~~~~~~~~~~~~~---~~v~~v~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~  409 (502)
                      +.+.+-... ....   ....++..   +..+++.|+.      -..+.+||+.+..       ...+..+...... .+
T Consensus       134 ~~~~~W~~~-~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~-~~  201 (318)
T 2woz_A          134 PVAAKWSEV-KNLPIKVYGHNVISH---NGMIYCLGGKTDDKKCTNRVFIYNPKKGD-------WKDLAPMKTPRSM-FG  201 (318)
T ss_dssp             TTTTEEEEE-CCCSSCEESCEEEEE---TTEEEEECCEESSSCBCCCEEEEETTTTE-------EEEECCCSSCCBS-CE
T ss_pred             CCCCCEeEC-CCCCCcccccEEEEE---CCEEEEEcCCCCCCCccceEEEEcCCCCE-------EEECCCCCCCccc-ce
Confidence            775431110 0001   11122222   2346666653      2358899987642       0111111111111 12


Q ss_pred             EEEcCCCCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC-------------
Q 010769          410 ISYNPLVPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-------------  471 (502)
Q Consensus       410 l~~sp~~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d-------------  471 (502)
                      ++.. ++ .+++.|+.+     ..+.+||+.+.+...+............+.+  ++. +++.||.+             
T Consensus       202 ~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~~~~  276 (318)
T 2woz_A          202 VAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGS-LYAIGGFAMIQLESKEFAPTE  276 (318)
T ss_dssp             EEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCCBC----CCBCCB
T ss_pred             EEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCE-EEEECCeeccCCCCceeccce
Confidence            2222 23 677777653     3477899988775443332222222222222  344 67777754             


Q ss_pred             -CcEEEEECCCCc
Q 010769          472 -GKLEIWDTLSDA  483 (502)
Q Consensus       472 -g~i~vwd~~~~~  483 (502)
                       ..+.+||+.+.+
T Consensus       277 ~~~v~~yd~~~~~  289 (318)
T 2woz_A          277 VNDIWKYEDDKKE  289 (318)
T ss_dssp             CCCEEEEETTTTE
T ss_pred             eeeEEEEeCCCCE
Confidence             358889987643

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.49  E-value=3.1  Score=43.87  Aligned_cols=185  Identities=11%  Similarity=0.187  Sum_probs=102.4

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEec-----cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS  342 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  342 (502)
                      .|.++.. .+ + .|..|+.+ -|..++..+++... +.     .....|.++....++ .+. .|+.. -|..++..+.
T Consensus       104 ~i~~i~~-~~-g-~lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g-~lW-igt~~-Gl~~~~~~~~  175 (758)
T 3ott_A          104 DVRTMAL-QG-D-TLWLGALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDN-QIY-VGTYN-GLCRYIPSNG  175 (758)
T ss_dssp             CEEEEEE-ET-T-EEEEEETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTC-CEE-EEETT-EEEEEETTTT
T ss_pred             eEEEEEe-cC-C-cEEEEcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCC-CEE-EEeCC-CHhhCccCCC
Confidence            4666654 33 3 45556655 58889987665432 21     123568888887777 444 45554 4777887654


Q ss_pred             CCccceEe-----ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769          343 THSGFKWA-----VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       343 ~~~~~~~~-----~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                      ........     ....|.++...+.+. .+.+|+. +-|..++..+...       .....+  ....|.++...+++ 
T Consensus       176 ~~~~~~~~~~~~~~~~~i~~i~~d~~~~-~lWigt~-~Gl~~~~~~~~~~-------~~~~~l--~~~~i~~i~~d~~g-  243 (758)
T 3ott_A          176 KFEGIPLPVHSSQSNLFVNSLLEDTTRQ-CVWIGTE-GYLFQYFPSTGQI-------KQTEAF--HNNSIKSLALDGNG-  243 (758)
T ss_dssp             EEEEECCCCCTTCSSCCEEEEEEETTTT-EEEEEEE-EEEEEEETTTTEE-------EEEEEE--EEEEEEEEEECTTC-
T ss_pred             ceEEecCCCccccccceeEEEEEECCCC-EEEEEEC-CCCeEEcCCCCeE-------EeccCC--CCCeEEEEEEcCCC-
Confidence            32211111     112377887776544 4566664 4588888765410       111111  23457888877766 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEEec-----CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769          418 NLLATGSTDKMVKLWDLSNNQPSCIASRN-----PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-----~~~~~v~~~~~spd~~~llasg~~dg~i~vw  477 (502)
                      . |..|+.. -+.+++..+.+........     .....|.++....+|.  |-.|+..| +.++
T Consensus       244 ~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWiGT~~G-l~~~  303 (758)
T 3ott_A          244 D-LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN--IWLGTDYG-ISLS  303 (758)
T ss_dssp             C-EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC--EEEEESSS-EEEE
T ss_pred             C-EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC--EEEEeCCc-cccc
Confidence            3 3344444 5888888766532221111     1234589999888887  33445555 4443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.19  E-value=3.8  Score=43.15  Aligned_cols=190  Identities=10%  Similarity=0.085  Sum_probs=109.5

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      ..|.++.-..+ + .|..|+.+| +..||..+.+...........|.++.. .++  .|..++.+ .|..++..+.....
T Consensus        63 ~~i~~i~~d~~-g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g--~lWigt~~-Gl~~~~~~~~~~~~  135 (758)
T 3ott_A           63 TRIYCGVIIDN-T-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD--TLWLGALN-GLYTYQLQSRKLTS  135 (758)
T ss_dssp             SCEEEEEEETT-T-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT--EEEEEETT-EEEEEETTTCCEEE
T ss_pred             ceEEEEEEcCC-C-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC--cEEEEcCC-cceeEeCCCCeEEE
Confidence            56888877666 3 566666655 889998876543211112335777654 344  45556655 57888876644321


Q ss_pred             ceE----eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe--c----CCCCeeEEEEcCCC
Q 010769          347 FKW----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--A----HDKAVCTISYNPLV  416 (502)
Q Consensus       347 ~~~----~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~----h~~~v~~l~~sp~~  416 (502)
                      ...    .....|.++....++.  +.+|+.. -|..|+..+..          ...+.  .    ....|.++...+.+
T Consensus       136 ~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~i~~d~~~  202 (758)
T 3ott_A          136 FDTRRNGLPNNTIYSIIRTKDNQ--IYVGTYN-GLCRYIPSNGK----------FEGIPLPVHSSQSNLFVNSLLEDTTR  202 (758)
T ss_dssp             ECHHHHCCSCSCEEEEEECTTCC--EEEEETT-EEEEEETTTTE----------EEEECCCCCTTCSSCCEEEEEEETTT
T ss_pred             eccCCCCcCCCeEEEEEEcCCCC--EEEEeCC-CHhhCccCCCc----------eEEecCCCccccccceeEEEEEECCC
Confidence            100    1124577888777554  5556654 47778876541          11111  1    12247888777665


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          417 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       417 ~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                       ..|..|+. +-+..++..+.+........  ...|.++...+++.  |-.|+. +-|.+++..++.
T Consensus       203 -~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~i~~d~~g~--lWigT~-~Gl~~~~~~~~~  262 (758)
T 3ott_A          203 -QCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKSLALDGNGD--LLAGTD-NGLYVYHNDTTP  262 (758)
T ss_dssp             -TEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEEEEECTTCC--EEEEET-TEEEEECCTTSC
T ss_pred             -CEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEEEEEcCCCC--EEEEeC-CceeEEecCCCc
Confidence             44444443 45888998776533222221  24588898888887  333454 458888876654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.19  E-value=0.79  Score=43.24  Aligned_cols=60  Identities=13%  Similarity=0.037  Sum_probs=27.9

Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC------cEEEEECCCCCeeEEEEe
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK------MVKLWDLSNNQPSCIASR  445 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg------~i~vwd~~~~~~~~~~~~  445 (502)
                      .+.+||+.+..       ...+..+......-.++.+  ++ .+++.|+.++      .|.++++.+++.......
T Consensus       286 ~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~  351 (357)
T 2uvk_A          286 STDIHLWHNGK-------WDKSGELSQGRAYGVSLPW--NN-SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE  351 (357)
T ss_dssp             CCEEEECC----------CEEEEECSSCCBSSEEEEE--TT-EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred             eEEEEecCCCc-------eeeCCCCCCCcccceeEEe--CC-EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence            47788887642       1222222222222222322  33 7788888643      356668888775443333

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.67  E-value=0.53  Score=49.21  Aligned_cols=193  Identities=9%  Similarity=0.122  Sum_probs=97.1

Q ss_pred             CcEEEEEecC----CcEEEEECCCCeeeEEe-c------cCCCCeEEEEEcC-CCCcEEEEEECCC------cEEEEeCC
Q 010769          279 RNILASASAD----KQVKIWDVAAGKCNLTL-E------HHTDKVQAVAWNH-HSPQILLSGSFDR------SVVMKDAR  340 (502)
Q Consensus       279 ~~~l~sgs~D----g~v~vwd~~~~~~~~~~-~------~h~~~v~~l~~~~-~~~~~l~s~~~dg------~i~vwd~~  340 (502)
                      +.+++.|+.+    ..+.+||+.+++....- .      .....-.+++..+ ++ .+++.|+.++      .+.+||+.
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccEEEEeCC
Confidence            4477777653    46889998877543222 1      1111112333333 45 7788877543      47788887


Q ss_pred             CCCCccc--eEeecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEE---EecCCCCeeEEEEc
Q 010769          341 ISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFT---LHAHDKAVCTISYN  413 (502)
Q Consensus       341 ~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~s  413 (502)
                      +..-...  .........++.+. + ..+++.|+.++  .+.+||..+..-       ..+..   +......-.++.+.
T Consensus       477 t~~W~~~~~~p~~R~~h~~~~~~-~-~~iyv~GG~~~~~~v~~yd~~t~~W-------~~~~~~g~~p~~r~~~~a~v~~  547 (695)
T 2zwa_A          477 TREWSMIKSLSHTRFRHSACSLP-D-GNVLILGGVTEGPAMLLYNVTEEIF-------KDVTPKDEFFQNSLVSAGLEFD  547 (695)
T ss_dssp             TTEEEECCCCSBCCBSCEEEECT-T-SCEEEECCBCSSCSEEEEETTTTEE-------EECCCSSGGGGSCCBSCEEEEE
T ss_pred             CCcEEECCCCCCCcccceEEEEc-C-CEEEEECCCCCCCCEEEEECCCCce-------EEccCCCCCCCcccceeEEEEe
Confidence            6421110  00011112223322 3 44777776554  689999886520       11100   11111222335555


Q ss_pred             CCCCCEEEEEeC--C-----CcEEEEECCCCC------eeEEEEec-CCCCCEEEEEEcCCCCcEEEEEeC--------C
Q 010769          414 PLVPNLLATGST--D-----KMVKLWDLSNNQ------PSCIASRN-PKAGAVFSVAFSEDSPFVLAIGGS--------K  471 (502)
Q Consensus       414 p~~~~~l~t~s~--d-----g~i~vwd~~~~~------~~~~~~~~-~~~~~v~~~~~spd~~~llasg~~--------d  471 (502)
                      .....+++.|+.  +     +.+.+||+.+..      ...+.... ...... ++....++. +++.||.        .
T Consensus       548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~-iyv~GG~~~~~~~~~~  625 (695)
T 2zwa_A          548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRK-LLIVGGTSPSGLFDRT  625 (695)
T ss_dssp             TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTE-EEEECCBCSSCCCCTT
T ss_pred             CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCE-EEEECCccCCCCCCCC
Confidence            542367777765  2     358899998877      33333311 111112 222333344 6777874        3


Q ss_pred             CcEEEEECCCCc
Q 010769          472 GKLEIWDTLSDA  483 (502)
Q Consensus       472 g~i~vwd~~~~~  483 (502)
                      ..|.+||+.++.
T Consensus       626 ~~v~~yd~~t~~  637 (695)
T 2zwa_A          626 NSIISLDPLSET  637 (695)
T ss_dssp             TSEEEEETTTTE
T ss_pred             CeEEEEECCCCe
Confidence            468999998754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.37  E-value=0.098  Score=49.16  Aligned_cols=194  Identities=11%  Similarity=0.030  Sum_probs=100.4

Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEeccC-CCCeEEEEEc--CCCCcEEEEE-ECCCcEEEEeCCCCCCccceEeecCCe
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWN--HHSPQILLSG-SFDRSVVMKDARISTHSGFKWAVAADV  355 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h-~~~v~~l~~~--~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v  355 (502)
                      .+++.++.||.|.-.|..+|+.+.++... ..++....-.  +.+...++.. +.||.|..++..++... .......-+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccccce
Confidence            47899999999999999999999988653 1233222111  1121333333 58999999998765321 111111111


Q ss_pred             --EEEEeC-------C---CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC--C-----eeEEEEc---
Q 010769          356 --ESLAWD-------P---HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--A-----VCTISYN---  413 (502)
Q Consensus       356 --~~v~~~-------p---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~--~-----v~~l~~s---  413 (502)
                        .-+...       +   .....+++|+.+|.+...|++++         +.++.+.....  .     ..|....   
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG---------~~~W~~~~~~~~~~~~~~~e~~~~~~d~~  160 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG---------EIISAFGPGSKNGYFGSQSVDCSPEEKIK  160 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC---------CEEEEESTTCBCC----------------
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC---------cEEEEEecCCCcccccccccccccccccc
Confidence              001110       0   01337899999999999999998         66676653211  0     1111111   


Q ss_pred             C-CCCCEEEEEeCCCcEEEEECCCCCee--EEEEecCCCC--CE-EEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          414 P-LVPNLLATGSTDKMVKLWDLSNNQPS--CIASRNPKAG--AV-FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       414 p-~~~~~l~t~s~dg~i~vwd~~~~~~~--~~~~~~~~~~--~v-~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      . .....|+.+..+..+.+.+ ++++..  ..........  .+ .+-..+.++.+  +.++.+|.|.-+|..++..+-
T Consensus       161 ~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~--~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          161 LQECENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC--IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             ----CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC--EEEETTTEEEEECSTTCCEEE
T ss_pred             cccCCCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE--EEECCCCEEEEEECCCCcEEE
Confidence            0 1124566666666666655 333210  0011111100  00 00001234553  346788888888888777654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.17  E-value=5.1  Score=39.97  Aligned_cols=261  Identities=9%  Similarity=0.099  Sum_probs=135.6

Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchh------hhhhccccCCccccccccCCcccceeeEEec---CCCCcEE
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN---KEFRNIL  282 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~~~~l  282 (502)
                      +.+|+..|.|+|+-+.++..+..+.++...+..      ..++.....  .....--..|    ..+++.   -+|+.++
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~--~~~~~gD~HH----p~~S~tdg~yDGrylf  146 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDS--AKFLNGDCHH----PHISMTDGKYDGKYLF  146 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGG--GGCCCCCCCC----CEEEEETTEEEEEEEE
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcC--CCccCCCcCC----CcccccCCeeeeEEEE
Confidence            678999999999999988877766665543221      011000000  0000000111    123332   1333334


Q ss_pred             EEEecCCcEEEEECCCCeeeEEec-cCCCCeEEEEEc--CCCCcEEEEEEC-------CCcE---------EE---EeCC
Q 010769          283 ASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWN--HHSPQILLSGSF-------DRSV---------VM---KDAR  340 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~~l~s~~~-------dg~i---------~v---wd~~  340 (502)
                      +-.-....|-..++...++-..+. .....+..++|-  |.. .++++++.       ||..         .+   .|..
T Consensus       147 iNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T-~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~  225 (638)
T 3sbq_A          147 INDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHT-KYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAE  225 (638)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBC-CEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETT
T ss_pred             EecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCc-cEEEecceeeccCCCCCcccccCChhhceEEEEEcCC
Confidence            444466778888888887765553 245677888886  454 56666654       2221         11   1111


Q ss_pred             CCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC--------------CeEEEEECCCC-------CCCCCC--------
Q 010769          341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED--------------GTIKGFDIRTA-------KSDPDS--------  391 (502)
Q Consensus       341 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--------------g~i~i~d~~~~-------~~~~~~--------  391 (502)
                      +.+ +.......+....+...+++...|.++...              ..+.++++...       ......        
T Consensus       226 tm~-v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD  304 (638)
T 3sbq_A          226 TME-MAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLD  304 (638)
T ss_dssp             TCS-EEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred             ccE-EEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEc
Confidence            111 111112233344445566665444443211              12444443210       000000        


Q ss_pred             -CC----CCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-----------CeeEEEEecCCCCCEEEE
Q 010769          392 -TS----QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN-----------QPSCIASRNPKAGAVFSV  455 (502)
Q Consensus       392 -~~----~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~-----------~~~~~~~~~~~~~~v~~~  455 (502)
                       ..    ...+..+..-.....++.++|+|..++++|-.+.++.|+|+...           +-......... -.....
T Consensus       305 ~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt  383 (638)
T 3sbq_A          305 GRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHT  383 (638)
T ss_dssp             CSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEE
T ss_pred             cccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEE
Confidence             00    01122222233456788999999556666667999999998741           11123333333 346778


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769          456 AFSEDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       456 ~~spd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      +|.++|. ...+---|..|.-|++...
T Consensus       384 ~Fd~~G~-aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          384 TFDGRGN-AYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EECSSSE-EEEEETTTTEEEEEEHHHH
T ss_pred             EECCCCc-eEeeeeecceEEEEeccHH
Confidence            9999994 6777778999999999653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.89  E-value=4.1  Score=39.96  Aligned_cols=110  Identities=12%  Similarity=0.187  Sum_probs=58.3

Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe---------ecCCeEEEEeCCC---CCCEEEEEeC----
Q 010769          310 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---------VAADVESLAWDPH---AEHSFVVSLE----  373 (502)
Q Consensus       310 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---------~~~~v~~v~~~p~---~~~~l~~~~~----  373 (502)
                      .....|+|.|+| +++++-...+.|++++...+.... ...         ....+..|+|+|+   +..++++-+.    
T Consensus        27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~-~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeE-EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            456799999999 666554433468888765433211 111         1345678999995   4433333322    


Q ss_pred             --------CCeEEEEECCCCCCCCCCCCCCccEE-Eec-CCCCeeEEEEcCCCCCEEEEEe
Q 010769          374 --------DGTIKGFDIRTAKSDPDSTSQQSSFT-LHA-HDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       374 --------dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~-h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                              ...|.-|+........  ...+.+.. +.. .......|+|.|+| .+.++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~--~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTL--EKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEE--EEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCc--CCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence                    2356666654321000  00112221 221 12347899999998 5555544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.82  E-value=1.3  Score=40.92  Aligned_cols=182  Identities=13%  Similarity=0.138  Sum_probs=86.5

Q ss_pred             EEEEEecCCcEEEEECCCCeeeE-EeccCCCCeEEEEEcCCCCcEEEEEEC----CC-------cEEEEeCCCCCCccc-
Q 010769          281 ILASASADKQVKIWDVAAGKCNL-TLEHHTDKVQAVAWNHHSPQILLSGSF----DR-------SVVMKDARISTHSGF-  347 (502)
Q Consensus       281 ~l~sgs~Dg~v~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~----dg-------~i~vwd~~~~~~~~~-  347 (502)
                      +++.|+.  .+.+||..+++-.. .+..............++ .+++.|+.    ++       .+.+||..+.+-... 
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   94 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP   94 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence            4444543  48899998876543 122111112222223344 77888873    12       167788765431110 


Q ss_pred             -eEeecCCeEEEEeCCCCCCEEEEEeCC-------CeEEEEECCCCCCCCCCCCCCccEEEecCCCC--eeEEEEcCCCC
Q 010769          348 -KWAVAADVESLAWDPHAEHSFVVSLED-------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVP  417 (502)
Q Consensus       348 -~~~~~~~v~~v~~~p~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~  417 (502)
                       ..........+.+   +..+++.|+.+       ..+.+||..+..          ...+.....+  -.+++. .++ 
T Consensus        95 ~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~----------W~~~~~~p~~r~~~~~~~-~~~-  159 (318)
T 2woz_A           95 PLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVLCYDPVAAK----------WSEVKNLPIKVYGHNVIS-HNG-  159 (318)
T ss_dssp             CBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEEEEETTTTE----------EEEECCCSSCEESCEEEE-ETT-
T ss_pred             CCCccccccceEEE---CCEEEEEcCccCCCCcccceEEEEeCCCCC----------EeECCCCCCcccccEEEE-ECC-
Confidence             0000111222333   23466666643       247888887642          1111111111  011222 233 


Q ss_pred             CEEEEEeC------CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCc
Q 010769          418 NLLATGST------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIWDTLSDA  483 (502)
Q Consensus       418 ~~l~t~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg-----~i~vwd~~~~~  483 (502)
                      .+++.|+.      -..+.+||+.+.+...+............+.+  ++. +++.||.++     .+.+||+.+.+
T Consensus       160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCCCe
Confidence            66666664      23589999998865444322222221222222  344 677777543     47789987654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.59  E-value=0.76  Score=39.93  Aligned_cols=103  Identities=5%  Similarity=-0.004  Sum_probs=59.9

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCee------eEEe-c-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC------NLTL-E-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD  338 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~------~~~~-~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  338 (502)
                      ..+.+|+|+|+ +.+. +. .+|.+.-.+..+...      -..+ . +... ..++.|.|++ .+.++  .||.|+-++
T Consensus        41 ~~~~~laf~P~-G~LY-aV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPG-GELY-GV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTT-SCEE-EE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEES
T ss_pred             ccceeEEECCC-ccEE-EE-eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeC
Confidence            36779999997 4344 44 677766666544221      1111 0 1111 4788999998 55554  569888777


Q ss_pred             CCCCCCccce---Ee-ec---CCeEEEEeCCCCCCEEEEEeCCCeEEE
Q 010769          339 ARISTHSGFK---WA-VA---ADVESLAWDPHAEHSFVVSLEDGTIKG  379 (502)
Q Consensus       339 ~~~~~~~~~~---~~-~~---~~v~~v~~~p~~~~~l~~~~~dg~i~i  379 (502)
                      -.+.......   .. ..   ..+..|.+.|++.  |++.. ++.++-
T Consensus       114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~--Lyav~-dg~lyr  158 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY--LYAVH-GQQFYK  158 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC--EEEEE-TTEEEE
T ss_pred             CCcCCCCceeccccEeccCCCCceEEEEECCCce--EEEEe-CCcEEe
Confidence            5432222110   01 11   3689999999874  55555 887543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.56  E-value=4.8  Score=37.61  Aligned_cols=103  Identities=6%  Similarity=0.071  Sum_probs=55.9

Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEeccCC--CC-----eEEEEEc---C-CCCcEEEEEECCCcEEEEeCCCCCCccce
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTLEHHT--DK-----VQAVAWN---H-HSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~--~~-----v~~l~~~---~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  348 (502)
                      ..+++|+.+|++...|+.+|+.+..+....  ..     ..|....   . .....++.+..+..+.+.+ +++..-...
T Consensus       112 g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~  190 (339)
T 2be1_A          112 EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGASYNVT  190 (339)
T ss_dssp             EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSCCCCCE
T ss_pred             CEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCCeEEEe
Confidence            478999999999999999999999886321  10     1111111   0 1114677777777777766 333211100


Q ss_pred             Ee-ecCC-eE-----EEEeCCCCCCEEEEEeCCCeEEEEECCCC
Q 010769          349 WA-VAAD-VE-----SLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       349 ~~-~~~~-v~-----~v~~~p~~~~~l~~~~~dg~i~i~d~~~~  385 (502)
                      .. .... +.     +-..+.++  .+++++.+|.|..+|..++
T Consensus       191 ~s~~~~~~~~~~~~~~~~~s~Dg--~~~~~~~dg~v~A~d~~~G  232 (339)
T 2be1_A          191 YSTWQQNVLDVPLALQNTFSKDG--MCIAPFRDKSLLASDLDFR  232 (339)
T ss_dssp             EEEEECCTTTHHHHTTCSSCSSS--CCEEEETTTEEEEECSTTC
T ss_pred             cccccccccccccccccccccCC--cEEEECCCCEEEEEECCCC
Confidence            00 0000 00     00001122  3356788999999998876

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.56  E-value=4.4  Score=37.20  Aligned_cols=174  Identities=7%  Similarity=-0.006  Sum_probs=86.1

Q ss_pred             EecCCCCcEEEEEe----cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce
Q 010769          273 AWNKEFRNILASAS----ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       273 ~~~~~~~~~l~sgs----~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  348 (502)
                      .|++.+. .|+-..    ....|...++.... ...+..+..    ..|++.+..++.+......|.+.++....... .
T Consensus       110 ~~s~~g~-~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~-l  182 (302)
T 3s25_A          110 YASLIGN-YIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL-F  182 (302)
T ss_dssp             EEEEETT-EEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE-E
T ss_pred             EEEEeCC-EEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE-E
Confidence            5677744 555444    33455555655333 334433332    34566774545454446778887776544322 1


Q ss_pred             EeecCCeEEEEeCCCCCCEEEEEeCC-CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe--C
Q 010769          349 WAVAADVESLAWDPHAEHSFVVSLED-GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS--T  425 (502)
Q Consensus       349 ~~~~~~v~~v~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s--~  425 (502)
                        ..+... ..++|.+..++.+...+ ..|..-++...          ....+.  ...+  ..|+|.+ .+|+-++  .
T Consensus       183 --~~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~----------~~~~Lt--~~~~--~~~~~~g-~~Iy~~~~~~  244 (302)
T 3s25_A          183 --YDCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP----------NPVVLT--EANI--EHYNVYG-SLIFYQRGGD  244 (302)
T ss_dssp             --ECSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC----------CCEECS--CSCE--EEEEEET-TEEEEEECSS
T ss_pred             --eCCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC----------CeEEEe--CCCc--ceEEECC-CEEEEEECCC
Confidence              122222 33558777555554433 35666665543          122222  2233  3367777 5555442  3


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      .+.|..-++.......+..  .   .+..  +++.+.++..+--..+.|..-+
T Consensus       245 ~~~i~~~~~DG~~r~~l~~--~---~~~~--i~i~~d~Iy~td~~~~~i~~~~  290 (302)
T 3s25_A          245 NPALCVVKNDGTGFKELAK--G---EFCN--INVTSQYVYFTDFVSNKEYCTS  290 (302)
T ss_dssp             SCEEEEEETTSCCCEEEEE--S---CEEE--EEECSSEEEEEETTTCCEEEEE
T ss_pred             CcEEEEEECCCCccEEeeC--C---ccce--EEEeCCEEEEEECCCCeEEEEE
Confidence            4567777776554323322  1   2333  3445555555554455554444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.47  E-value=6.2  Score=38.63  Aligned_cols=58  Identities=12%  Similarity=0.078  Sum_probs=32.1

Q ss_pred             CEEEEEeCCCcEEEEECCC-CC-ee-EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEE
Q 010769          418 NLLATGSTDKMVKLWDLSN-NQ-PS-CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE  475 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~-~~-~~-~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~  475 (502)
                      .+|+..-..+.|....+.. +. .. ....+....+.+..|++.|||..|+++....|.|.
T Consensus       370 ~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~  430 (454)
T 1cru_A          370 TLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQ  430 (454)
T ss_dssp             EEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEE
T ss_pred             cEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCc
Confidence            3444444456677777664 22 11 11122223468999999999973344444556544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.21  E-value=2.9  Score=43.55  Aligned_cols=105  Identities=9%  Similarity=0.027  Sum_probs=57.4

Q ss_pred             CcEEEEEecCC--cEEEEECCCCeeeEE-----eccCCCCeEEEEEcCCCCcEEEEEECC-------CcEEEEeCCCCCC
Q 010769          279 RNILASASADK--QVKIWDVAAGKCNLT-----LEHHTDKVQAVAWNHHSPQILLSGSFD-------RSVVMKDARISTH  344 (502)
Q Consensus       279 ~~~l~sgs~Dg--~v~vwd~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~  344 (502)
                      +.+++.|+.++  .+.+||+.+.+-...     +........++.+......+++.|+.+       ..+.+||+.+..-
T Consensus       501 ~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w  580 (695)
T 2zwa_A          501 GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA  580 (695)
T ss_dssp             SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS
T ss_pred             CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc
Confidence            45777787655  699999988754322     111222233455565523778888762       3588899887661


Q ss_pred             -ccceE----ee--c--CCeEEEEeCCCCCCEEEEEeC--------CCeEEEEECCCC
Q 010769          345 -SGFKW----AV--A--ADVESLAWDPHAEHSFVVSLE--------DGTIKGFDIRTA  385 (502)
Q Consensus       345 -~~~~~----~~--~--~~v~~v~~~p~~~~~l~~~~~--------dg~i~i~d~~~~  385 (502)
                       ....|    ..  .  ....++.+. + ..+++.|+.        ...|.+||+.+.
T Consensus       581 ~~~~~W~~~~~~p~~~R~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          581 TEPITVIKKLQHPLFQRYGSQIKYIT-P-RKLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             SCCEEEEEEEECGGGCCBSCEEEEEE-T-TEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             ccceEEEEcCCCCCCCcccceEEEeC-C-CEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence             00011    10  1  112233332 1 346666663        345888998765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.06  E-value=6  Score=37.25  Aligned_cols=209  Identities=11%  Similarity=0.038  Sum_probs=106.1

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCe-eeEEec---cCCCCeEEEEEcCC---CCcEEEEEEC---C----C
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLE---HHTDKVQAVAWNHH---SPQILLSGSF---D----R  332 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~-~~~~~~---~h~~~v~~l~~~~~---~~~~l~s~~~---d----g  332 (502)
                      .....|+|.|++ . |+.+...|.|++++ ..++ .+..+.   ........|+++|+   +..++++-+.   +    +
T Consensus        29 ~~P~~ia~~pdG-~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLGGG-R-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEETT-E-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEcCCC-e-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            346889999994 3 55556679999997 4454 222221   12356889999997   4355554442   3    5


Q ss_pred             cEEEEeCCCCC--C--ccce-Eee----cCCeEEEEeCCCCCCEEEEEeC-------------CCeEEEEECCCCCCCCC
Q 010769          333 SVVMKDARIST--H--SGFK-WAV----AADVESLAWDPHAEHSFVVSLE-------------DGTIKGFDIRTAKSDPD  390 (502)
Q Consensus       333 ~i~vwd~~~~~--~--~~~~-~~~----~~~v~~v~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~~~~~~  390 (502)
                      .|..|+.....  .  .... ...    ......++|.|++. ++++.+.             .|.|..++........+
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            67777765431  1  0111 111    12346799999875 4444222             24566665542210000


Q ss_pred             CCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC---cEEEEECCC--------C------CeeEEEEecCCCCCEE
Q 010769          391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---MVKLWDLSN--------N------QPSCIASRNPKAGAVF  453 (502)
Q Consensus       391 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg---~i~vwd~~~--------~------~~~~~~~~~~~~~~v~  453 (502)
                      +.....++ ..+| .....++|+|....++++-....   .|.+.....        +      ....+...........
T Consensus       185 pf~~~~i~-a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~  262 (354)
T 3a9g_A          185 PFPNSPIW-SYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS  262 (354)
T ss_dssp             SSTTCCEE-EECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred             CCCCCcEE-EEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence            00001122 1233 33578999994326555533322   133322111        0      0011223211224577


Q ss_pred             EEEEc-------CCCCcEEEEEeCCCcEEEEECCCC
Q 010769          454 SVAFS-------EDSPFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       454 ~~~~s-------pd~~~llasg~~dg~i~vwd~~~~  482 (502)
                      .++|.       .++. ++++.-..+.|...++...
T Consensus       263 G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             EEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGG
T ss_pred             ceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCC
Confidence            88884       4565 5666556678888888753

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=91.34  E-value=10  Score=36.08  Aligned_cols=181  Identities=12%  Similarity=0.066  Sum_probs=85.7

Q ss_pred             cceeeEEecCCCCcEEEEEecCC----cEEEEECCCCeeeEEec------c--------CCCCeEEEEEcCCC-CcEEEE
Q 010769          267 DSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCNLTLE------H--------HTDKVQAVAWNHHS-PQILLS  327 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg----~v~vwd~~~~~~~~~~~------~--------h~~~v~~l~~~~~~-~~~l~s  327 (502)
                      ..|.+|++.|.....|..+...|    .|...+ ..++.-..+.      .        ....|.+|++.|.+ +..|.+
T Consensus        55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            56999999983233455555554    344332 2232211111      0        11257789998743 355666


Q ss_pred             EECCCcEEEEeCCCCC--Cccce----------------EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 010769          328 GSFDRSVVMKDARIST--HSGFK----------------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP  389 (502)
Q Consensus       328 ~~~dg~i~vwd~~~~~--~~~~~----------------~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~  389 (502)
                      ++..+.|...+-....  .....                ......+.+|.++|..+..+++++..+.|...+-. +    
T Consensus       134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G----  208 (394)
T 3b7f_A          134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-G----  208 (394)
T ss_dssp             EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-T----
T ss_pred             EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-C----
Confidence            6656655544322111  11000                00123478899998544456666555544443211 1    


Q ss_pred             CCCCCCccEEEec-------------CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC---CCEE
Q 010769          390 DSTSQQSSFTLHA-------------HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA---GAVF  453 (502)
Q Consensus       390 ~~~~~~~~~~~~~-------------h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~---~~v~  453 (502)
                           .....+..             ....+.+|.+.|..+..|..++..+ |...+-.......+ ......   ..+.
T Consensus       209 -----~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~tW~~~-~~~l~~~~~~~~~  281 (394)
T 3b7f_A          209 -----TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGVWKRI-GDAMPREVGDIGF  281 (394)
T ss_dssp             -----SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTEEECG-GGGSCTTTCSCEE
T ss_pred             -----CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCcceEC-CCCCCCCCccceE
Confidence                 11111100             0134888999997556777776554 44443222211111 100111   3467


Q ss_pred             EEEEcCC
Q 010769          454 SVAFSED  460 (502)
Q Consensus       454 ~~~~spd  460 (502)
                      +++++|.
T Consensus       282 ~i~~~p~  288 (394)
T 3b7f_A          282 PIVVHQR  288 (394)
T ss_dssp             EEEECSS
T ss_pred             EEEECCC
Confidence            7888864

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=91.29  E-value=10  Score=36.04  Aligned_cols=99  Identities=9%  Similarity=-0.001  Sum_probs=49.3

Q ss_pred             cEEEEEecCCcEEEEECCC-CeeeEEe--ccCCCCeEEEEEcCCCCcEEEEEECCC----cEEEEeCCCCCC---ccce-
Q 010769          280 NILASASADKQVKIWDVAA-GKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMKDARISTH---SGFK-  348 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~-~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~---~~~~-  348 (502)
                      ..|..|...| +.+++... ++.-..+  ......|.+|.+.|..+..|.+++..|    .|...+ ..+..   .... 
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~  100 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP  100 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence            4677777776 55554332 2211111  123457999999984334455555454    344332 11111   1100 


Q ss_pred             -Ee---------ecCCeEEEEeCCCC-CCEEEEEeCCCeEEEE
Q 010769          349 -WA---------VAADVESLAWDPHA-EHSFVVSLEDGTIKGF  380 (502)
Q Consensus       349 -~~---------~~~~v~~v~~~p~~-~~~l~~~~~dg~i~i~  380 (502)
                       ..         ....|.++++.|.+ +..+++++..+.|...
T Consensus       101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S  143 (394)
T 3b7f_A          101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS  143 (394)
T ss_dssp             CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred             cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence             00         11247788898743 4467777666665544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.50  E-value=11  Score=35.23  Aligned_cols=60  Identities=12%  Similarity=0.186  Sum_probs=34.8

Q ss_pred             CCeEEEEeCCC------CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE--EE-ecCCCCeeEEEEcCCCCCEEEE
Q 010769          353 ADVESLAWDPH------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF--TL-HAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       353 ~~v~~v~~~p~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~-~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      ..+..+.|...      ...++++....+.|...++...         ....  .+ ......+..+++.|+| .++++
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~~rp~~v~~~pdG-~lyv~  339 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD---------KVTEDGRILTDRGQRIRDVRTGPDG-YLYVL  339 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT---------EEEEEEEESGGGCCCEEEEEECTTS-CEEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC---------eEeeeEEcccCCCCceeEEEECCCC-cEEEE
Confidence            34566666532      1346666667778888877643         1111  12 1223578899999988 54443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=89.27  E-value=12  Score=34.26  Aligned_cols=176  Identities=7%  Similarity=0.029  Sum_probs=86.3

Q ss_pred             CCCCcEEEEEec-CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC-------------CcEEEEeCCC
Q 010769          276 KEFRNILASASA-DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-------------RSVVMKDARI  341 (502)
Q Consensus       276 ~~~~~~l~sgs~-Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-------------g~i~vwd~~~  341 (502)
                      .+++.+.++... ++.|...+..... ...+..  ..  +--+++++..+..+...+             ..|+..++..
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            443433333322 4556666644332 333332  11  234567774555554443             3566666665


Q ss_pred             CCCccceEeecCCeEEEEeCCCCCCEEEEE---eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769          342 STHSGFKWAVAADVESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       342 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      .....  . ....  +..|++.+..++++.   .....|+..++..          .....+..+..    .+++|.+..
T Consensus        98 ~~~~~--l-~~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG----------s~~~~lt~~~~----~~~~~~g~~  158 (302)
T 3s25_A           98 HGSTV--L-DPDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG----------EEKKKIKNHYL----FTCNTSDRY  158 (302)
T ss_dssp             CCCEE--E-ECSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTS----------CCCEEEESSCC----CCSEEETTE
T ss_pred             CcceE--e-ecCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCC----------CCeEEEeCCCc----eEeeEECCE
Confidence            54222  1 1122  225667776555554   2344555555553          22334443432    345677744


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC-cEEEEECCC
Q 010769          419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-KLEIWDTLS  481 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg-~i~vwd~~~  481 (502)
                      +..+.....+|.+.++.......+  ..   +... ..++|++.+|+.+...++ .|..-++..
T Consensus       159 iy~t~~g~~~Iy~~~l~g~~~~~l--~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          159 FYYNNPKNGQLYRYDTASQSEALF--YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             EEEECTTTCCEEEEETTTTEEEEE--EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred             EEEEeCCCceEEEEECCCCCEEEE--eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence            444544467888888877654333  22   2232 235688887555543332 455555543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=88.47  E-value=17  Score=34.42  Aligned_cols=171  Identities=6%  Similarity=0.086  Sum_probs=96.6

Q ss_pred             cEEEEECCCC--eeeEEecc------CCCCeEEEEEc---CC---CCcEEEEE-ECCCcEEEEeCCCCCCccce------
Q 010769          290 QVKIWDVAAG--KCNLTLEH------HTDKVQAVAWN---HH---SPQILLSG-SFDRSVVMKDARISTHSGFK------  348 (502)
Q Consensus       290 ~v~vwd~~~~--~~~~~~~~------h~~~v~~l~~~---~~---~~~~l~s~-~~dg~i~vwd~~~~~~~~~~------  348 (502)
                      .|.+||+.+.  +.++++.-      ..+.+..+.+.   |.   +..++..+ +..+.|.|+|+.+++.....      
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5777888888  87777642      13457777777   22   11343333 45678999999876543211      


Q ss_pred             ------------EeecCCeEEEEeCCC----CCCEEEEEeCCCeEEEEEC---CCCCCCCCCCCCCccEEEecC--CCCe
Q 010769          349 ------------WAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFDI---RTAKSDPDSTSQQSSFTLHAH--DKAV  407 (502)
Q Consensus       349 ------------~~~~~~v~~v~~~p~----~~~~l~~~~~dg~i~i~d~---~~~~~~~~~~~~~~~~~~~~h--~~~v  407 (502)
                                  +.....+..++++|+    +..+.+.......++-...   +....      ...+..+...  ....
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~------~~~v~~~G~kg~~s~~  277 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGG------KLNPELLGNRGKYNDA  277 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTC------CCCCEEEEECCTTCCE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcch------hhceEEeeecCCCCCc
Confidence                        011346788889887    4434444444334444432   22210      1222222211  1334


Q ss_pred             eEEEEc-CCCCCEEEEEeCCCcEEEEECCC-----CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769          408 CTISYN-PLVPNLLATGSTDKMVKLWDLSN-----NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       408 ~~l~~s-p~~~~~l~t~s~dg~i~vwd~~~-----~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~  469 (502)
                      ..+++. .+| .++++--..+.|..|+..+     ... .+.........+..+.+.+++. |.+.++
T Consensus       278 ~~~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~n~-~~l~~d~~l~~pd~~~i~~~g~-Lwv~sn  342 (381)
T 3q6k_A          278 IALAYDPKTK-VIFFAEANTKQVSCWNTQKMPLRMKNT-DVVYTSSRFVFGTDISVDSKGG-LWFMSN  342 (381)
T ss_dssp             EEEEECTTTC-EEEEEESSSSEEEEEETTSCSBCGGGE-EEEEECTTCCSEEEEEECTTSC-EEEEEC
T ss_pred             ceEEEeCCCC-eEEEEeccCCeEEEEeCCCCccccCce-EEEEECCCccccCeEEECCCCe-EEEEEC
Confidence            456675 455 7777777888999999876     122 2233333556788888888876 555543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.12  E-value=15  Score=33.23  Aligned_cols=186  Identities=16%  Similarity=0.135  Sum_probs=101.2

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  347 (502)
                      .|..|+....  +.++. . ||.|..|-....-.+..-..-...|..++....   ..+.-. +|.|..|-.........
T Consensus        64 ~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~  135 (282)
T 3qhy_B           64 GVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTV  135 (282)
T ss_dssp             CCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSC
T ss_pred             CEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCC
Confidence            5777776554  34444 4 899999986542211111111346777776654   333444 99999998765333222


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK  427 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg  427 (502)
                      .......|..++.-..  +.++ -. +|.|+.|-........     .+    ......|..++....  ..++.  .+|
T Consensus       136 ~~~~~~~i~~i~~G~~--~~~~-l~-~G~v~~wG~n~~gqlg-----~p----~~~~~~v~~i~~G~~--hs~al--~~G  198 (282)
T 3qhy_B          136 PAEAQSGVTALDGGVY--TALA-VK-NGGVIAWGDNYFGQTT-----VP----AEAQSGVDDVAGGIF--HSLAL--KDG  198 (282)
T ss_dssp             CGGGGSSEEEEEECSS--EEEE-EE-TTEEEEEECCTTSTTS-----CC----GGGGSSEEEEEECSS--EEEEE--ETT
T ss_pred             CccCCCCeEEEEcccC--EEEE-EE-CCEEEEecCCCCCCCC-----Cc----eecCCCeEEEEecCC--EEEEE--ECC
Confidence            2223455777766432  2333 33 7999999876542111     01    011345777766542  33444  599


Q ss_pred             cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      .|+.|=.......-+ . ......|..++......  ++..  +|.|+.|=.....+
T Consensus       199 ~v~~wG~n~~gqlg~-p-~~~~~~v~~i~~G~~h~--~al~--~g~v~~wG~n~~gq  249 (282)
T 3qhy_B          199 KVIAWGDNRYKQTTV-P-TEALSGVSAIASGEWYS--LALK--NGKVIAWGSSRTAP  249 (282)
T ss_dssp             EEEEEECCTTSTTCC-C-GGGGSSCCEEEECSSCE--EEEE--TTEEEEESTTCCCC
T ss_pred             eEEEEECCCCCCCCC-C-cccCCCceEEEcCCCEE--EEEE--CCEEEEecCCCCcc
Confidence            999997654321110 0 01123466676655443  4433  88999997765443

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=87.93  E-value=30  Score=36.54  Aligned_cols=150  Identities=11%  Similarity=0.128  Sum_probs=80.4

Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccC-------CCCeEEEEEcCCCCcEEEEEECCCc----E
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSFDRS----V  334 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~~~dg~----i  334 (502)
                      ...|.+|+++|.....++.+...+.|...+ ..|+.-..+..+       ...|.+|++.|..+..++++.....    -
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            458999999998667788888777776665 334322223221       2469999999865555655543311    2


Q ss_pred             EEEeCCCCCCccceEee--------c--CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe---
Q 010769          335 VMKDARISTHSGFKWAV--------A--ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---  401 (502)
Q Consensus       335 ~vwd~~~~~~~~~~~~~--------~--~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---  401 (502)
                      .||-.......-.....        .  ..+..++++|..+..++++...+.|  |-....-        +.-..+.   
T Consensus        93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG--------~TW~~~~~~~  162 (789)
T 1sqj_A           93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRA--------KTWTNVTSIP  162 (789)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTT--------SSCEEETTSC
T ss_pred             EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCC--------cccCCCccCc
Confidence            33332221111000110        0  1356788888666677777644433  3222221        1111111   


Q ss_pred             ---cCCCCeeEEEEcCCCCCEEEEEeCC
Q 010769          402 ---AHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       402 ---~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                         .....+..+.++|..+..|+.+..+
T Consensus       163 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          163 DAFTNGIGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             CCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred             cccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence               1124578899988655566666554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.26  E-value=6.2  Score=39.36  Aligned_cols=103  Identities=10%  Similarity=-0.025  Sum_probs=67.6

Q ss_pred             cEEEEeCCC----CCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC--C-CCCCccEEEecCCC
Q 010769          333 SVVMKDARI----STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD--S-TSQQSSFTLHAHDK  405 (502)
Q Consensus       333 ~i~vwd~~~----~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~-~~~~~~~~~~~h~~  405 (502)
                      .|.+.|.+.    ................+..+|+|.++++.|--+.++.++|++.......  . .....+.....-.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            467777776    3334445566777788999999997777788899999999985311000  0 00111222222234


Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      .....+|.+.| +...|.-.|..|.-|++..
T Consensus       379 GPlHt~Fd~~G-~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          379 GPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             CEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred             cccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence            56778999987 6666667899999999865

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=84.41  E-value=0.34  Score=46.51  Aligned_cols=15  Identities=20%  Similarity=0.333  Sum_probs=7.1

Q ss_pred             HHHHHHHHccccccc
Q 010769           26 EEIEEIINSGALEHE   40 (502)
Q Consensus        26 ~~~~~~~~~~~~~~~   40 (502)
                      +.+.+++.+....++
T Consensus       323 ~~l~~~l~~~~~~~l  337 (386)
T 2ca6_A          323 DEIREVFSTRGRGEL  337 (386)
T ss_dssp             HHHHHHHHHHTCCEE
T ss_pred             HHHHHHhhhcCcchh
Confidence            445555555444443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.83  E-value=37  Score=33.13  Aligned_cols=74  Identities=8%  Similarity=-0.066  Sum_probs=36.8

Q ss_pred             CccEEEecCC-CCeeEEEEcCCC-----CCEEEEEeCCCcEEEEECCCCCee-EEEEe---------cCCCCCEEEEEEc
Q 010769          395 QSSFTLHAHD-KAVCTISYNPLV-----PNLLATGSTDKMVKLWDLSNNQPS-CIASR---------NPKAGAVFSVAFS  458 (502)
Q Consensus       395 ~~~~~~~~h~-~~v~~l~~sp~~-----~~~l~t~s~dg~i~vwd~~~~~~~-~~~~~---------~~~~~~v~~~~~s  458 (502)
                      .++..+..|. ..++.+.|-...     ...++.+...+.|....+...... ....+         ....+.+..+.+.
T Consensus       265 ~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~  344 (463)
T 2wg3_C          265 PSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGED  344 (463)
T ss_dssp             CCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEEC
T ss_pred             CCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEEC
Confidence            4566655442 567888875321     112444444577666666443211 11111         1124679999999


Q ss_pred             CCCCcEEEEEe
Q 010769          459 EDSPFVLAIGG  469 (502)
Q Consensus       459 pd~~~llasg~  469 (502)
                      |+|. |+++..
T Consensus       345 pdG~-Lyv~~~  354 (463)
T 2wg3_C          345 ELGE-VYILSS  354 (463)
T ss_dssp             TTCC-EEEEEE
T ss_pred             CCCC-EEEEec
Confidence            9998 455443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.67  E-value=38  Score=33.10  Aligned_cols=113  Identities=11%  Similarity=0.134  Sum_probs=61.8

Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe---------cCCCCeeEEEEcCC---CCCEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---------AHDKAVCTISYNPL---VPNLL  420 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~sp~---~~~~l  420 (502)
                      .....|+|.|++...++++...|.|++++......      ..++..+.         .....+..|+|+|+   ...+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~------~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lY   87 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF------KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY   87 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC------SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee------eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEE
Confidence            45678999998753466667889999997532210      01222111         12456889999995   21333


Q ss_pred             EEEeC--C----------CcEEEEECCCC--------CeeEEEEec--CCCCCEEEEEEcCCCCcEEEEEeCCC
Q 010769          421 ATGST--D----------KMVKLWDLSNN--------QPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       421 ~t~s~--d----------g~i~vwd~~~~--------~~~~~~~~~--~~~~~v~~~~~spd~~~llasg~~dg  472 (502)
                      ++-+.  +          ..|.-|.+...        ....+....  .....-..|+|.|||. |+++.|..+
T Consensus        88 v~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~  160 (463)
T 2wg3_C           88 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGM  160 (463)
T ss_dssp             EEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTT
T ss_pred             EEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCC
Confidence            33332  1          13444655421        112232222  1122367899999997 666666543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.24  E-value=15  Score=39.79  Aligned_cols=39  Identities=23%  Similarity=0.490  Sum_probs=32.8

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEec
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE  306 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~  306 (502)
                      ..|.++...++ ..++++-+.|+++|+|++.+++++.+..
T Consensus       236 ~~~~~~~~~~~-~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETT-TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCC-CcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            45677777777 5699999999999999999999988763

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=81.72  E-value=53  Score=34.11  Aligned_cols=234  Identities=14%  Similarity=0.144  Sum_probs=0.0

Q ss_pred             CCCCCCEEEEecCCC-----cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccccee---------
Q 010769          205 DREKGNFMAVGSMEP-----AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL---------  270 (502)
Q Consensus       205 ~s~~~~~la~g~~dg-----~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---------  270 (502)
                      ++|++++++.+-..|     .|+++|+.+...+.                                 +.+.         
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~---------------------------------~~~~~~~k~~~~~  183 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK---------------------------------NGFEPITNSGKLL  183 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT---------------------------------TCSCCBCTTCCBC
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC---------------------------------CCccccccccccc


Q ss_pred             ----eE-EecCCCCcEEEEE----------ecCCcEEEEECCCC--eeeEEeccCCCCeEEEEEcCCCCc-----EEEEE
Q 010769          271 ----GL-AWNKEFRNILASA----------SADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQ-----ILLSG  328 (502)
Q Consensus       271 ----~l-~~~~~~~~~l~sg----------s~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~-----~l~s~  328 (502)
                          ++ +|... ..++++.          +.-..|+.|.+-+.  +-...+.+....+..-.+....+.     .+++.
T Consensus       184 ~~~~~~~~W~d~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  262 (711)
T 4hvt_A          184 EGKFTYPTWINK-DTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISA  262 (711)
T ss_dssp             CEETCCEEEEET-TEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEE
T ss_pred             ccccceeeEECC-CEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEE


Q ss_pred             E---CCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC---------CCeEEEEECCC-------CCCCC
Q 010769          329 S---FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE---------DGTIKGFDIRT-------AKSDP  389 (502)
Q Consensus       329 ~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---------dg~i~i~d~~~-------~~~~~  389 (502)
                      +   ....+.+.+...+.............. +..+..+..++.+.+.         .+.|...++..       .    
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----  337 (711)
T 4hvt_A          263 NKDFYNYDNYILDTKYKNLKLQKINMPSDAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDK----  337 (711)
T ss_dssp             ESSSSCEEEEEEECSSSSCEEEECCSCTTCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGC----
T ss_pred             ecccCceeEEEEcCCCCCCcceEeecCCcce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCccccccccc----


Q ss_pred             CCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc--EEEEECCCCCeeEEE-EecCCCCCEEEEEEcCCCCcEEE
Q 010769          390 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKLWDLSNNQPSCIA-SRNPKAGAVFSVAFSEDSPFVLA  466 (502)
Q Consensus       390 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~--i~vwd~~~~~~~~~~-~~~~~~~~v~~~~~spd~~~lla  466 (502)
                           .....+..+.....--.+...+..++++...++.  |.++++.++...... ......+.+..+.+++++..+++
T Consensus       338 -----~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~  412 (711)
T 4hvt_A          338 -----TSLKILFTPTANEVFNFISTTKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALI  412 (711)
T ss_dssp             -----TTCEEEECCCTTEEEEEEEECSSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEE
T ss_pred             -----ccceEEECCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEE


Q ss_pred             EEeCC---CcEEEEECCCCc
Q 010769          467 IGGSK---GKLEIWDTLSDA  483 (502)
Q Consensus       467 sg~~d---g~i~vwd~~~~~  483 (502)
                      +.++.   +.+..+|+. ++
T Consensus       413 ~~ss~~~P~~~~~~d~~-~~  431 (711)
T 4hvt_A          413 TIENSIVPPTIYLWVKT-HE  431 (711)
T ss_dssp             EEECSSSCCEEEEECTT-SC
T ss_pred             EEecCCCCCEEEEEeCC-Cc

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=80.34  E-value=34  Score=36.08  Aligned_cols=154  Identities=12%  Similarity=0.018  Sum_probs=77.0

Q ss_pred             CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC--CccceEe----ecCCeEEEEeCCCCCCEEEEEeCCCe----EE
Q 010769          309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST--HSGFKWA----VAADVESLAWDPHAEHSFVVSLEDGT----IK  378 (502)
Q Consensus       309 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~----~~~~v~~v~~~p~~~~~l~~~~~dg~----i~  378 (502)
                      ...|.+|.++|..+..+++++..+.|...+=....  .+.....    ....+.+++++|..+..++++.....    -.
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            46899999999877788888877776554321110  0000000    12468999999865556666543311    23


Q ss_pred             EEECCCCCCCCCCCCCCccEEEec---------CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe-c--
Q 010769          379 GFDIRTAKSDPDSTSQQSSFTLHA---------HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR-N--  446 (502)
Q Consensus       379 i~d~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~-~--  446 (502)
                      ||-....-        ..-..+..         ....+..++++|..+..++.+...+.|. .....++.-..... .  
T Consensus        94 v~~S~DgG--------~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~  164 (789)
T 1sqj_A           94 FYVSEDRG--------QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDA  164 (789)
T ss_dssp             EEEESSTT--------SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCC
T ss_pred             EEEECCCC--------CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccc
Confidence            33322221        11111110         0113567888886556677766444332 12222221111111 1  


Q ss_pred             -CCCCCEEEEEEcCCCCcEEEEEeCC
Q 010769          447 -PKAGAVFSVAFSEDSPFVLAIGGSK  471 (502)
Q Consensus       447 -~~~~~v~~~~~spd~~~llasg~~d  471 (502)
                       .....+..+.++|.....|.++..+
T Consensus       165 ~~~~~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          165 FTNGIGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             CSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred             cCCCCCeEEEEECCCCCCEEEEEEcC
Confidence             1124578899988543234445443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	502
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	5e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.5 bits (215), Expect = 2e-19
 Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 14/162 (8%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333
                  +  S + D   K+WDV  G C  T   H   + A+ +  +      +GS D +
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDAT 249

Query: 334 VV--MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 391
                  A     +     +   + S+++        +   +D     +D   A      
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALKADR---- 304

Query: 392 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
                +  L  HD  V  +         +ATGS D  +K+W+
Sbjct: 305 -----AGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (166), Expect = 3e-13
 Identities = 43/251 (17%), Positives = 72/251 (28%), Gaps = 37/251 (14%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN------ 318
           H   +  + W  + R +L SAS D ++ IWD         +   +  V   A+       
Sbjct: 54  HLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 319 -HHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH----------- 366
                  + S    ++           +G    ++                         
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 367 -----------SFVVSLEDGTIKGFDIRTAKSDP-----DSTSQQSSFTLHAHDKAVCTI 410
                      +  V             +   D      D        T   H+  +  I
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232

Query: 411 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS 470
            + P   N  ATGS D   +L+DL  +Q     S +     + SV+FS+    +LA G  
Sbjct: 233 CFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYD 290

Query: 471 KGKLEIWDTLS 481
                +WD L 
Sbjct: 291 DFNCNVWDALK 301

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 19/170 (11%), Positives = 48/170 (28%), Gaps = 19/170 (11%)

Query: 182 YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQP------- 234
           +                    L           G+ + + ++WD+      Q        
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228

Query: 235 ----------HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284
                     +    G D+   +    +  +  + Y   +    +  ++++K    +L +
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLA 287

Query: 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 334
              D    +WD         L  H ++V  +         + +GS+D  +
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFL 336

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 29/213 (13%), Positives = 65/213 (30%), Gaps = 40/213 (18%)

Query: 300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 359
           +   TL  H  K+ A+ W   S ++L+S S D  +++ D+  +         ++ V + A
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC----------- 408
           + P   +       D     ++++T + +   + + +  T +                  
Sbjct: 105 YAPSGNY-VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163

Query: 409 ------------------------TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
                                             L  +G+ D   KLWD+      C  +
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM--CRQT 221

Query: 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
                  + ++ F  +     A G       ++
Sbjct: 222 FTGHESDINAICFFPNGNA-FATGSDDATCRLF 253

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 25/177 (14%), Positives = 44/177 (24%), Gaps = 36/177 (20%)

Query: 121 YYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPN 180
            + S   D   K  D  +       T   +++ I                   SD     
Sbjct: 198 LFVSGACDASAKLWDVREGMCR--QTFTGHESDINAI----CFFPNGNAFATGSDDATCR 251

Query: 181 LYVHHHIIIPAFPLCMAWLD--CPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 238
           L+                +     +   + G  +  G  +    +WD    D      +L
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG---VL 308

Query: 239 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295
            G                        H + V  L    +    +A+ S D  +KIW+
Sbjct: 309 AG------------------------HDNRVSCLGVTDD-GMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (205), Expect = 2e-18
 Identities = 56/303 (18%), Positives = 103/303 (33%), Gaps = 47/303 (15%)

Query: 209 GNFMAVGSMEPAIEIWDLD--------------VIDEVQPHVILGGIDEEKKKKKSKKGK 254
            + M   S +  I++WD +              V D    H                   
Sbjct: 29  FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88

Query: 255 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA 314
           +     +     D  +         + + SAS DK +K+W+V  G C  T   H + V+ 
Sbjct: 89  QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 148

Query: 315 VAWNHHSPQILLSGSFDRSVVMKD-------ARISTHSGFKWAVAADVES---------- 357
           V  N     ++ S S D++V +         A +  H      ++   ES          
Sbjct: 149 VRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207

Query: 358 --LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415
                        +    D TIK +D+ T              TL  HD  V  + ++  
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC---------LMTLVGHDNWVRGVLFHS- 257

Query: 416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 475
               + + + DK +++WD  N +  C+ + N     V S+ F + +P+ +  G     ++
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKR--CMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVK 314

Query: 476 IWD 478
           +W+
Sbjct: 315 VWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 15/206 (7%)

Query: 259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN 318
           KY    H   V  + ++    +++ SAS D  +K+WD   G    TL+ HTD VQ ++++
Sbjct: 10  KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 319 HHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
           H    +    +     +                                 V +  D TIK
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV--SIMPNGDHIVSASRDKTIK 126

Query: 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
            ++++T              T   H + V  +  N     L+A+ S D+ V++W ++  +
Sbjct: 127 MWEVQT---------GYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKE 176

Query: 439 PSCIASRNPKAGAVFSVAFSEDSPFV 464
             C A        V  ++++ +S + 
Sbjct: 177 --CKAELREHRHVVECISWAPESSYS 200

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.7 bits (148), Expect = 5e-11
 Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 11/208 (5%)

Query: 174 SDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQ 233
            D       V     +  F     W+     +++ G  +A  S +  + +W +   +   
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECK- 178

Query: 234 PHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293
              +       +    + +   SSI    GS T        + +    L S S DK +K+
Sbjct: 179 -AELREHRHVVECISWAPESSYSSISEATGSET------KKSGKPGPFLLSGSRDKTIKM 231

Query: 294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353
           WDV+ G C +TL  H + V+ V ++    + +LS + D+++ + D +         A   
Sbjct: 232 WDVSTGMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEH 290

Query: 354 DVESLAWDPHAEHSFVVSLEDGTIKGFD 381
            V SL +   A +  V    D T+K ++
Sbjct: 291 FVTSLDFHKTAPY-VVTGSVDQTVKVWE 317

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 2e-16
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 9/150 (6%)

Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343
           SAS D+ +K+W+ +  +   TL  H    + +A   +  ++++SGS D ++ + D     
Sbjct: 153 SASGDRTIKVWNTSTCEFVRTLNGHK---RGIACLQYRDRLVVSGSSDNTIRLWDIECGA 209

Query: 344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 403
                  +    E +          V    DG IK +D+  A             TL  H
Sbjct: 210 C---LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 266

Query: 404 DKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
              V  + ++      + + S D  + +WD
Sbjct: 267 SGRVFRLQFD---EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 8e-13
 Identities = 44/255 (17%), Positives = 81/255 (31%), Gaps = 57/255 (22%)

Query: 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 323
             +  V  L ++      + S   D  +KIWD    +C   L  HT  V  + ++     
Sbjct: 13  ETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 324 ILLSGSF-------------------------------------DRSVVMKDARISTHSG 346
              S S                                      DRS+ + D    T   
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129

Query: 347 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA 406
            +  +     ++      +   V +  D TIK ++  T +            TL+ H + 
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE---------FVRTLNGHKRG 180

Query: 407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLA 466
           +  + Y      L+ +GS+D  ++LWD+       +       G    V         + 
Sbjct: 181 IACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLE-----GHEELVRCIRFDNKRIV 232

Query: 467 IGGSKGKLEIWDTLS 481
            G   GK+++WD ++
Sbjct: 233 SGAYDGKIKVWDLVA 247

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAG---------KCNLTLEHHTDKVQAVAWNHHSPQI 324
             +     + S + D ++K+WD+ A           C  TL  H+ +V  + ++      
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQ 279

Query: 325 LLSGSFDRSV 334
           ++S S D ++
Sbjct: 280 IVSSSHDDTI 289

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWD 295
           H+  V  L +++     + S+S D  + IWD
Sbjct: 266 HSGRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 6e-16
 Identities = 49/212 (23%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333
             +     + S + D  VK+WD     C  TL+ HT++V            ++SGS D S
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY---SLQFDGIHVVSGSLDTS 198

Query: 334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS 393
           + + D              +    +    +     V    D T+K +DI+T         
Sbjct: 199 IRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKT--------- 246

Query: 394 QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC---IASRNPKAG 450
            Q   TL   +K    ++      N + T S D  VKLWDL   +              G
Sbjct: 247 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 306

Query: 451 AVFSVAFSEDSPFVLAIGGSKG----KLEIWD 478
            V+ +  S     V A+G   G    KL + D
Sbjct: 307 VVWRIRASNTKL-VCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (186), Expect = 8e-16
 Identities = 52/267 (19%), Positives = 89/267 (33%), Gaps = 62/267 (23%)

Query: 251 KKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT 309
           ++G+  S K  KG H D V+  L +     N + S S D  +K+W    GKC  TL  HT
Sbjct: 2   RRGELKSPKVLKG-HDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 310 DKVQAVAWN-------------------------------------HHSPQILLSGSFDR 332
             V +                                         H   + ++SGS D 
Sbjct: 58  GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 333 SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST 392
           ++ + D              A V       +     V    D  +K +D  T        
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAV---RCVQYDGRRVVSGAYDFMVKVWDPET-------- 166

Query: 393 SQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 452
            +    TL  H   V ++ ++      + +GS D  +++WD+      CI +        
Sbjct: 167 -ETCLHTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLT 220

Query: 453 FSVAFSEDSPFVLAIGGSKGKLEIWDT 479
             +   ++   +L  G +   ++IWD 
Sbjct: 221 SGMELKDN---ILVSGNADSTVKIWDI 244

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 12/162 (7%)

Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
             + S S D  +++WDV  G C  TL  H      +        IL+SG+ D +V + D 
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDI 244

Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
           +                ++      ++  + S +DGT+K +D++T +   +  + +S   
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES--- 301

Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDK----MVKLWDLSNN 437
                  V  I  +     + A GS +      + + D   +
Sbjct: 302 -GGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 36/177 (20%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
           G  +  GS++ +I +WD++  + +                                H   
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLT---------------------------GHQSL 219

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
             G+       NIL S +AD  VKIWD+  G+C  TL+       AV     +   +++ 
Sbjct: 220 TSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276

Query: 329 SFDRSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF 380
           S D +V + D +         +         V  +           V   +GT +  
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV-CAVGSRNGTEETK 332

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.1 bits (180), Expect = 7e-15
 Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 35/185 (18%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHSPQILL 326
            +      +A+ S D+ V++WD   G     L+        H D V +V +     Q ++
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVV 270

Query: 327 SGSFDRSVVMKDARISTHSGFKWA------------VAADVESLAWDPHAEHSFVVSLED 374
           SGS DRSV + + + + +                      V S+A   + E+  +   +D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKD 329

Query: 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP-----NLLATGSTDKMV 429
             +  +D ++               L  H  +V +++           N+ ATGS D   
Sbjct: 330 RGVLFWDKKSGNP---------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380

Query: 430 KLWDL 434
           ++W  
Sbjct: 381 RIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.9 bits (164), Expect = 6e-13
 Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 20/204 (9%)

Query: 290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA-------RIS 342
            V+IWD+  G+C+LT     D V  VA +    + + +GS DR+V + D+       R+ 
Sbjct: 186 TVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244

Query: 343 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS---DPDSTSQQSSFT 399
           + +         V S+ +    +   V    D ++K ++++ A +        S     T
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459
              H   V +++        + +GS D+ V  WD  +     +        +V SVA + 
Sbjct: 304 YIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGN--PLLMLQGHRNSVISVAVAN 360

Query: 460 DSPF-----VLAIGGSKGKLEIWD 478
            S       V A G    K  IW 
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 41/285 (14%), Positives = 83/285 (29%), Gaps = 74/285 (25%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH----------------- 307
           HT  V  + ++ +    LA+   +K  +++ V+ G     L                   
Sbjct: 61  HTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 308 -HTDKVQAVAWNHHSPQILLSG-------------------------------------- 328
                +++V ++     +                                          
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 329 --SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
                   V      +       ++   V ++A  P           D  ++ +D  T  
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP------- 439
                 S+  S T   H  +V ++ +       + +GS D+ VKLW+L N          
Sbjct: 239 LVERLDSENESGT--GHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 440 ---SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
              +C  +       V SVA +++  ++L+ G     +  WD  S
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILS-GSKDRGVLFWDKKS 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 21/131 (16%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
           G  +  GS++ ++++W+L                    K  SK     + +     H D 
Sbjct: 266 GQSVVSGSLDRSVKLWNLQ---------------NANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-----HHSPQ 323
           VL +A  +     + S S D+ V  WD  +G   L L+ H + V +VA            
Sbjct: 311 VLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369

Query: 324 ILLSGSFDRSV 334
           +  +GS D   
Sbjct: 370 VFATGSGDCKA 380

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 32/93 (34%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
             ++  GS +  +  WD                 +        +G           H +S
Sbjct: 320 DEYILSGSKDRGVLFWDK----------------KSGNPLLMLQG-----------HRNS 352

Query: 269 VLGLAWNKEFR-----NILASASADKQVKIWDV 296
           V+ +A           N+ A+ S D + +IW  
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.4 bits (165), Expect = 4e-13
 Identities = 40/191 (20%), Positives = 78/191 (40%), Gaps = 18/191 (9%)

Query: 265 HTDSVLG-LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 323
           H  SV+  L +     N + + + DK ++++D    K  L L  H   V A+ + H    
Sbjct: 11  HMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-- 65

Query: 324 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF-VVSLEDGTIKGFDI 382
           IL+SGS DR+V + D +    +       + V  L    +    + V    D T+  + +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 383 RTAKSDPDS-----------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 431
               S PD            T +++ + +      + ++       N++ +GS D  + +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 432 WDLSNNQPSCI 442
           WD++  +   I
Sbjct: 186 WDVAQMKCLYI 196

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 3e-07
 Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQ 323
           H  ++  +       NIL S S + Q  I+++ +GK  +  +    D++ +V +   +  
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-- 336

Query: 324 ILLSGSFDRSVVMKD 338
           ++ +   D    ++ 
Sbjct: 337 LVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 8e-07
 Identities = 45/297 (15%), Positives = 88/297 (29%), Gaps = 26/297 (8%)

Query: 182 YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 241
                                + + +   ++  GS +  + +W L     V  H    G 
Sbjct: 81  IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH----GE 136

Query: 242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 301
           + +         +          H  SV          NI+ S S D  + +WDVA  KC
Sbjct: 137 EHDYPLVFHTPEENPYFVGVLRGHMASV---RTVSGHGNIVVSGSYDNTLIVWDVAQMKC 193

Query: 302 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 361
              L  HTD++ +  ++H   +              D  I         +   ++     
Sbjct: 194 LYILSGHTDRIYSTIYDHERKRC--------ISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 421
                     L              S     +   S     H   +  I+   +  N+L 
Sbjct: 246 VGLLRLSDKFLVSA-------AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298

Query: 422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           +GS +    +++L + +    A+    A  ++SV F   +  ++A     G+  +  
Sbjct: 299 SGS-ENQFNIYNLRSGKL-VHANILKDADQIWSVNFKGKT--LVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 16/162 (9%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333
                R    SAS D  ++IWD+  G+   TL+ HT  V  +  +               
Sbjct: 208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS-----AAAD 262

Query: 334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS 393
             ++    + +S        ++ ++     +++  +VS  +     +++R+ K       
Sbjct: 263 GSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRSGK------- 314

Query: 394 QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435
                 +      + ++++      L+A    D    L  L 
Sbjct: 315 -LVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 26/305 (8%), Positives = 72/305 (23%), Gaps = 19/305 (6%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQ---------------PHVILGGIDEEKKKKKSKKG 253
            N++  G+ +  I ++D      +                   IL     ++  +     
Sbjct: 23  DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 82

Query: 254 KKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ 313
           K       +G ++          +    + + S D  + +W +             D   
Sbjct: 83  KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 142

Query: 314 AVAWNHHSPQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVV 370
                  +P  +       + V   +    I     +   +     +     +       
Sbjct: 143 VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 202

Query: 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 430
            +          R   +  D+T +            +   +    +  L           
Sbjct: 203 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAAD 262

Query: 431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490
                 +        +     + ++     S  +L   GS+ +  I++  S   +     
Sbjct: 263 GSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV-SGSENQFNIYNLRSGKLVHANIL 321

Query: 491 KYSKP 495
           K +  
Sbjct: 322 KDADQ 326

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.5 bits (155), Expect = 7e-12
 Identities = 25/218 (11%), Positives = 64/218 (29%), Gaps = 9/218 (4%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---HTDKVQAVAWNHHS 321
             D +  +      +++L   S D  + ++       N+ L     +   +    +  ++
Sbjct: 10  PKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 322 PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 381
              +  G+    ++  D   S          A++       + +   + +  DG I+  D
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128

Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-S 440
            R       +    +      + K    I       + L  G  +  V+ + L   +  +
Sbjct: 129 PRNYGDGVIAVKNLN----SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
                +     +  VA         A     G++ +  
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 30/289 (10%), Positives = 77/289 (26%), Gaps = 49/289 (16%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
            + + + S + ++ ++  D                           K+    +   +   
Sbjct: 23  KSLLLITSWDGSLTVYKFD------------------------IQAKNVDLLQSLRYKHP 58

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
           +L   +       +   +   ++   D+        L ++   +       +    L++ 
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 329 SFDRSVVMKDAR-----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
           S+D  + + D R     +                +          +V + +  ++ F + 
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 384 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
             +          +         +  ++  P      A  S D  V +    +      +
Sbjct: 179 LCE------DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232

Query: 444 SRNPK-------------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479
           S+                A  V S+ FS    F L   GS G +  W+ 
Sbjct: 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNL 280

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 18/149 (12%), Positives = 41/149 (27%), Gaps = 15/149 (10%)

Query: 195 CMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGK 254
               +       ++    A  S++  + +   D   +                 K    +
Sbjct: 192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY------------NSSKRFAFR 239

Query: 255 KSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQA 314
              +  K  +    V  + ++      L +A +D  +  W++   K         ++   
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSV 297

Query: 315 VAWNHHSPQILLSGSFDRSVVMKDARIST 343
           V     S  IL   + D +     A   T
Sbjct: 298 VKI-ACSDNILCLATSDDTFKTNAAIDQT 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 254 KKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ 313
            +  IK     + DSV+ +A +    NIL  A++D   K         + T+E +   + 
Sbjct: 282 TRKKIKNFAKFNEDSVVKIACS---DNILCLATSDDTFKTN----AAIDQTIELNASSIY 334

Query: 314 AVAWNHHSP 322
            + +++ +P
Sbjct: 335 II-FDYENP 342

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 7/69 (10%), Positives = 19/69 (27%), Gaps = 4/69 (5%)

Query: 304 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAW 360
             +   D +  +        +LL  S+D S+ +    I   +            +    +
Sbjct: 6   IEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 361 DPHAEHSFV 369
             + +    
Sbjct: 65  IDNTDLQIY 73

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 28/180 (15%), Positives = 51/180 (28%), Gaps = 11/180 (6%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSP 322
             + +   AWNK+ R  +A    + +V I++ +  K      L+ H  +V  V W   S 
Sbjct: 6   LVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS- 63

Query: 323 QILLSGSFDRSV-VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 381
             +++   DR+  V      +                      E  F V      I    
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441
                             +    ++            LLA GS D   +++     +   
Sbjct: 124 FEQEN------DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 177

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 460
               + +   ++N      +A    +  V +++ S N+   +       G V  V ++ D
Sbjct: 4   SFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 461 SPFVLAIGGSKGKLEIWD 478
           S   +   G+     +W 
Sbjct: 63  SNR-IVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (125), Expect = 4e-08
 Identities = 43/307 (14%), Positives = 85/307 (27%), Gaps = 46/307 (14%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
              +A+      + I++                           G K    ++   H   
Sbjct: 19  RTQIAICPNNHEVHIYEKS-------------------------GNKWVQVHELKEHNGQ 53

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILL-- 326
           V G+ W  +  N + +   D+   +W +       TL        A        +     
Sbjct: 54  VTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV 112

Query: 327 ---SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
              S         ++         K  + + V SL W P++      S  D   + F   
Sbjct: 113 GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-CDFKCRIFSAY 171

Query: 384 TAKSDPD---------STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434
             + +               +  F   +    V  + ++    + +A  S D  V L D 
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADA 230

Query: 435 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494
                  +A+   +   + +V F  +S  V    G      ++   S AG  +   +   
Sbjct: 231 DKKM--AVATLASETLPLLAVTFITESSLV--AAGHDCFPVLFTYDSAAGKLSFGGRLDV 286

Query: 495 PKKPQSV 501
           PK+    
Sbjct: 287 PKQSSQR 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 21/180 (11%)

Query: 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 323
           S    V G+ ++    + +A  S D  V + D        TL   T  + AV +   S  
Sbjct: 199 SSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES-S 256

Query: 324 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW--DPHAEHSFVVSLEDGTIKGFD 381
           ++ +G     V+           F +  AA   S     D   + S          +  D
Sbjct: 257 LVAAGHDCFPVL-----------FTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 305

Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP---LVPNLLATGSTDKMVKLWDLSNNQ 438
            + +     +           H  +V  IS         +   T   D  + +WD+ + +
Sbjct: 306 KKASSEGSAAAGAG---LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-----QILLSGSFDRSV 334
           +++A+   D    ++   +    L+     D  +  +    +       +    S + S 
Sbjct: 256 SLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 314

Query: 335 VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS 387
                  S H      ++     L+        F  +  DG +  +D+R+ +S
Sbjct: 315 AAGAGLDSLHKNSVSQISV----LSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 5e-10
 Identities = 41/333 (12%), Positives = 94/333 (28%), Gaps = 48/333 (14%)

Query: 168 VYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD 227
           V+  +  D  +P    + H +  +    +  L    +D  +   +A  S    +  + + 
Sbjct: 38  VWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 97

Query: 228 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287
                         ++E KK   +K        KK S      G + ++   + L +   
Sbjct: 98  R-------------EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 144

Query: 288 DKQVKIWDVAAGKCN------------------LTLEHHTDKVQAVAWNHHSPQILLSGS 329
                IW                           +    +    +V  +     ++ +G 
Sbjct: 145 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGF 202

Query: 330 FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-----EDGTIKGFDI-- 382
            + +V + +           +  + + +       + S   SL     +  +     +  
Sbjct: 203 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 262

Query: 383 -----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437
                R       + S Q+S    AH   V ++S+N      L +   D  ++ WD+   
Sbjct: 263 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTK 321

Query: 438 QPSCI--ASRNPKAGAVFSVAFSEDSPFVLAIG 468
           +         +        +A  E    +   G
Sbjct: 322 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 32/240 (13%), Positives = 67/240 (27%), Gaps = 51/240 (21%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268
            +F    S +  +++WD  ++D   P                 K     +      H D 
Sbjct: 24  NSFTVSCSGDGYLKVWDNKLLDNENPKD---------------KSYSHFVHKSGLHHVDV 68

Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
           +  +  +     ++A+ S    +  + +        +      +       HS       
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS------- 121

Query: 329 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD 388
                               WA+       + D    H  V +   GT   +       +
Sbjct: 122 -------------------FWALKW---GASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159

Query: 389 PDSTSQQSSFTLHAHDKAVCTISYNPLV-------PNLLATGSTDKMVKLWDLSNNQPSC 441
            +S +   S TL         ++ +            L+ATG  +  V++ +LS  +P  
Sbjct: 160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLY 219

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 9e-08
 Identities = 29/232 (12%), Positives = 61/232 (26%), Gaps = 40/232 (17%)

Query: 304 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA-------------RISTHSGFKWA 350
             + H   + +V+         +S S D  + + D                  H      
Sbjct: 9   AGKAHDADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT---AKSDPDSTSQQSSFTLHAHDKAV 407
           V   ++++  D         +   G +  + I      K             +  H    
Sbjct: 66  VDV-LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 408 CTISY--NPLVPNLLATGSTDKMVKLWDLSNNQ----------------PSCIASRNPKA 449
                  + L+ + L          +W                         + S    +
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPKKPQSV 501
               SV  SE    ++A G + G ++I +  +   + N  S++S      S+
Sbjct: 185 QFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 10/189 (5%)

Query: 185 HHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE 244
             + I          +   +     N  ++ S++ + +   L +  +      +   + E
Sbjct: 205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264

Query: 245 KKK---KKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 301
             +     S     S     + +H+  V+ L++N      L SA  D +++ WDV   + 
Sbjct: 265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKER 323

Query: 302 NLTLEHHTDKVQ----AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADV 355
             TL  H D ++     +A + H   +   G FD   + K  R    +            
Sbjct: 324 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD 383

Query: 356 ESLAWDPHA 364
            S+ W   A
Sbjct: 384 RSIRWFREA 392

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.7 bits (137), Expect = 8e-10
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 3/109 (2%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQ 323
           H  ++  L+ + +    L SA A+  +  WD++ G  N    + H   +  +        
Sbjct: 11  HNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 324 ILLSGSFD-RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS 371
             +S     + V    + + +       +++    LA     + +    
Sbjct: 70  FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 3e-06
 Identities = 33/276 (11%), Positives = 72/276 (26%), Gaps = 9/276 (3%)

Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGG----IDEEKKKKKSKKGKKSSIKYKKGS 264
           G  +     E  I  WD+     +   V        I   K   K      S   + K  
Sbjct: 24  GKTLFSADAEGHINSWDIS--TGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV 81

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
                   +       + +           D+A   C   +  ++          ++   
Sbjct: 82  PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSC 141

Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
           +   +  + V +       H       +         P    S   S     +   D   
Sbjct: 142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 201

Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL--LATGSTDKMVKLWDLSNNQPSCI 442
                   +       ++       ++     P+   LATGS D  V +W+++      I
Sbjct: 202 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 261

Query: 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
             +   A +  +     +   +++  G    ++ W+
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVS-AGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457
             + H+KA+  +S +      L +   +  +  WD+S    + +         +  +  
Sbjct: 7   VRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHA-TMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 9/119 (7%), Positives = 24/119 (20%), Gaps = 8/119 (6%)

Query: 317 WNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 376
            N+ +  +    S                   W       +                D +
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247

Query: 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435
           +  +++                   AH  +             + +   D  +K W++ 
Sbjct: 248 VIVWNMNKPS-------DHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 17/120 (14%), Positives = 26/120 (21%), Gaps = 2/120 (1%)

Query: 177 GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHV 236
            +       +          +    P             S                   +
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 237 ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296
             G +D         K     I  K      SV  + W  E    + SA  D  +K W+V
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 0.002
 Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 1/42 (2%)

Query: 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340
           G  +     H   + A++      + L S   +  +   D  
Sbjct: 2   GSIDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSWDIS 42

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 55.3 bits (131), Expect = 6e-09
 Identities = 17/214 (7%), Positives = 55/214 (25%), Gaps = 20/214 (9%)

Query: 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR 332
           A+    ++        + + ++D+   K       ++             + L   S+  
Sbjct: 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP--AFDADSKNLYYLSYRS 200

Query: 333 SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK-------GFDIRTA 385
                D  +   S    +       +   P + +   +     T +           R++
Sbjct: 201 LDPSPDRVVLNFSFEVVS---KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 257

Query: 386 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 445
             + D    +    L +         +               ++  +D+   + + +   
Sbjct: 258 PINVDPGDYRMIIPLESSILIYSVPVHGEFA-AYYQGAPEKGVLLKYDVKTRKVTEVK-- 314

Query: 446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479
                 +  +  S D    + +    GK+  +  
Sbjct: 315 ----NNLTDLRLSADRKT-VMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 12/175 (6%), Positives = 38/175 (21%), Gaps = 26/175 (14%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333
                   L   S        D      +  +      +  +  + +  +++       +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHS------------FVVSLEDGTIKGFD 381
                  +   S        D   +     +               +  + E G +  +D
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304

Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436
           ++T K             +      +  +  +      +     D  +  + L  
Sbjct: 305 VKTRK-------------VTEVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEK 345

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 334
             +ASASADK +KIW+VA  K   T+   T           + Q L+S S +  +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 418 NLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 476
             +A+ S DK +K+W+++  +    I            + +++ +   L    + G +  
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA---LVSISANGFINF 307

Query: 477 WD 478
            +
Sbjct: 308 VN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 2/89 (2%)

Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
           + +   +    V    V +         H+ +         S     SG    +V + D 
Sbjct: 30  DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKT-SPSGYYCASGDVHGNVRIWDT 87

Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSF 368
             +TH                   +E   
Sbjct: 88  TQTTHILKTTIPVFSGPVKDISWDSESKR 116

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 9/75 (12%)

Query: 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 419
                      +  D TIK +++ T K       +++       +     I +       
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKV------EKTIPVGTRIEDQQLGIIWTK---QA 295

Query: 420 LATGSTDKMVKLWDL 434
           L + S +  +   + 
Sbjct: 296 LVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 27/114 (23%)

Query: 182 YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 241
                       +  +     L     G  +A  S +  I+IW++  +       I  G 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE--KTIPVG- 279

Query: 242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295
                                    D  LG+ W K     L S SA+  +   +
Sbjct: 280 ---------------------TRIEDQQLGIIWTK---QALVSISANGFINFVN 309

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 24/279 (8%), Positives = 70/279 (25%), Gaps = 49/279 (17%)

Query: 249 KSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAGKCNLTLEH 307
                K   +    G  +  V  + ++       L S     +V +W     K + ++E 
Sbjct: 46  DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV 105

Query: 308 --------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 359
                       +  ++W+    ++ + G    +  +  +  S +S  + +  +   +  
Sbjct: 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165

Query: 360 WDPHAEHSFVVSLEDGTIKGFDI------------RTAKSDPDSTSQQSSFTLHAHDKAV 407
               +     +++ D     F                 +       + S  +        
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225

Query: 408 CTISYNPLVP----------------------------NLLATGSTDKMVKLWDLSNNQP 439
                +                                   AT   D  +++WD++ ++ 
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285

Query: 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
               + + +      V         +      G L  ++
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 7e-07
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 9/129 (6%)

Query: 308 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 367
               V+ V ++  S + +++   DR +   D +      +       V+   +      S
Sbjct: 204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 263

Query: 368 --FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 425
             F     D TI+ +D+ T+K           +TL         +         + + S 
Sbjct: 264 QKFATVGADATIRVWDVTTSK-------CVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 426 DKMVKLWDL 434
           D  +  ++L
Sbjct: 317 DGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 18/126 (14%)

Query: 256 SSIKYKK------GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE--- 306
           SSI  K+       +  +    L+++     I         V+  D    K    ++   
Sbjct: 1   SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG 60

Query: 307 HHTDKVQAVAWN-HHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVES 357
           H +  V  V ++     Q L SG     V++        S             +A  +  
Sbjct: 61  HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120

Query: 358 LAWDPH 363
           ++WD  
Sbjct: 121 ISWDFE 126

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 6e-05
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 13/118 (11%)

Query: 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412
                L++DP          +   ++  D   +K  P        FT H     V T+ +
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQ-----FTGH-GSSVVTTVKF 71

Query: 413 NPLVP-NLLATGSTDKMVKLWDLSNNQPSCIASRNPKA------GAVFSVAFSEDSPF 463
           +P+     L +G     V +W  + ++ S     N K+      G +  +++  +   
Sbjct: 72  SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 11/115 (9%), Positives = 23/115 (20%), Gaps = 25/115 (21%)

Query: 182 YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 241
                +                         A    +  I +WD+     VQ        
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ-------- 287

Query: 242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296
                               K    +  +G+         + S S D  +  +++
Sbjct: 288 ---------------KWTLDKQQLGNQQVGVVATGN--GRIISLSLDGTLNFYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 4e-08
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 3/70 (4%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
           H   VL L +         S   D  +  W    G      +     V +   +    + 
Sbjct: 264 HESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISVDD-KY 320

Query: 325 LLSGSFDRSV 334
           +++GS D+  
Sbjct: 321 IVTGSGDKKA 330

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 460
           H H+  V ++ +         +   D ++  W          +  +    +V S   S D
Sbjct: 262 HLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVD 317

Query: 461 SPFVLAIGGSKGKLEIWDTL 480
             + +  G    K  +++ +
Sbjct: 318 DKY-IVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 10/91 (10%), Positives = 30/91 (32%), Gaps = 7/91 (7%)

Query: 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWN 318
           +H + V  +  +   R  + +      VK+WD++          L   +  + +++    
Sbjct: 49  NHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 319 HHSPQILLSGSFDRSVVMKDARISTHSGFKW 349
                +++ G      +   A  +     + 
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN---QPSCIASRNPKAGAVFSVAFSE 459
           H + VC ++ +      + TG     VK+WD+S+     P        +   + S     
Sbjct: 50  HGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 460 DSPFVLAIGGSKGKLEIW 477
           D    L +GG    L IW
Sbjct: 108 DGCT-LIVGGEASTLSIW 124

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 12/115 (10%), Positives = 27/115 (23%), Gaps = 29/115 (25%)

Query: 182 YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 241
            +H +                LK    G +      +  +  W                 
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT--------------- 294

Query: 242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296
                               +   + SVL    + +    + + S DK+  +++V
Sbjct: 295 -------------PYGASIFQSKESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 33/269 (12%), Positives = 83/269 (30%), Gaps = 5/269 (1%)

Query: 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 271
           +  GS +  I  W    + +   ++I+   + + ++  S     +        H      
Sbjct: 24  LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQP 83

Query: 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331
              +       A  + D  + I     G    ++  ++         ++    L  G+  
Sbjct: 84  KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI 143

Query: 332 RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 391
           +   + D  +S     K  + A    ++  P   +     +    +              
Sbjct: 144 QVFKLSDLEVSFD--LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW 201

Query: 392 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 451
             + S     +   A    +   +  +L+ATGS D  + ++ +       I + N     
Sbjct: 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDG 260

Query: 452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480
           V ++ +   S   L   G+   ++ W+ +
Sbjct: 261 VNNLLWETPS--TLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 2e-06
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS 321
           H   +  L  N      L S S D ++  W  ++       + H++ + ++  +   
Sbjct: 12  HNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458
           T+  H+K +  ++ NPL      +GS D  +  W  S+            +  + S+  S
Sbjct: 8   TISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSSMHQD-------HSNLIVSLDNS 55

Query: 459 EDSPFV 464
           +   + 
Sbjct: 56  KAQEYS 61

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 3e-05
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 28/115 (24%)

Query: 182 YVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGI 241
                                 ++  + + +A GS++  I I+ +               
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK-------------- 245

Query: 242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296
                       +   I     +H D V  L W     + L S+ AD  +K W+V
Sbjct: 246 ------------RPMKIIKALNAHKDGVNNLLWETP--STLVSSGADACIKRWNV 286

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 14/174 (8%), Positives = 36/174 (20%), Gaps = 13/174 (7%)

Query: 271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGS 329
           G A        +   +    + + DVA+     +                 +    +  +
Sbjct: 1   GPALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 59

Query: 330 FDRSVVMKDA------RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
               +   D         +  S     V   + S A  P  +  +        +    + 
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 384 TAKS----DPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
                         +          + V  +       +L   G     + +  
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQV-YLMRAADDGSLYVAGPDIYKMDVKT 172

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 24/252 (9%), Positives = 57/252 (22%), Gaps = 33/252 (13%)

Query: 258 IKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH------HTDK 311
            K                 + R      +    +   D+   K                 
Sbjct: 31  YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS 90

Query: 312 VQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAEHSFVV 370
           + + A +    ++  + +  + +             F  A   + + +   P     +++
Sbjct: 91  MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 371 SL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC--------------------- 408
              +DG++        K D  +     +  L   ++                        
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 409 -TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI 467
            TI+         AT          DL   +       +      F+   S   P  +  
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYG 269

Query: 468 GGSKGKLEIWDT 479
                +L  +D 
Sbjct: 270 VL--NRLAKYDL 279

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 9e-04
 Identities = 12/113 (10%), Positives = 30/113 (26%), Gaps = 3/113 (2%)

Query: 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333
             K+ +   A+A         D+  GK +        ++             + G  +R 
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRL 274

Query: 334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
                 +          +      +A+D   +    +      +  F+  T +
Sbjct: 275 AKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLE 324

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 13/162 (8%), Positives = 38/162 (23%), Gaps = 9/162 (5%)

Query: 279 RNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 336
           R+ + + +   ++ + D         +T+                     + +   S+V 
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 337 KDAR-----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG-FDIRTAKSDPD 390
            D                     +   A  P  +   +           F+++  +    
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432
                S        + +  +++     + L     D  V   
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDP 161

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 4/62 (6%), Positives = 12/62 (19%)

Query: 418 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
           + +   +    + + D        + +             +       A       L   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 478 DT 479
           D 
Sbjct: 62  DL 63

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 4/53 (7%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW 317
              S   +  + +  + +    A   +  +D    +    ++   +   ++A 
Sbjct: 278 LPHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479
             S    + + D+++N+   + +  P          S D   V         + I DT
Sbjct: 7   ANSESDNISVIDVTSNK---VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 7/43 (16%), Positives = 14/43 (32%)

Query: 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE 306
                  G+A   + + +  + S    V + D A      T+ 
Sbjct: 241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
           + S    + + DV + K   T+            +    ++ ++ +    V + D 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 9/83 (10%), Positives = 28/83 (33%)

Query: 419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
           +       + + +W+L++     +       G V  +  S D  ++      + ++  + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 479 TLSDAGISNRFSKYSKPKKPQSV 501
              D G     ++ + P     +
Sbjct: 66  IAPDDGALTFAAESALPGSLTHI 88

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (86), Expect = 0.003
 Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 19/139 (13%)

Query: 349 WAVAADVESL----AWDPHAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH 403
           W V    E        D   E+ F V+L + G I   D  T +        ++       
Sbjct: 11  WKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYE-------IKTVLDTG-- 61

Query: 404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS---CIASRNPKAGAVFSVAFSED 460
             AV     +      L     D  V + DL   +P+    I   +       S     +
Sbjct: 62  -YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 461 SPFVLAIGGSKGKLEIWDT 479
             + +A      +  I D 
Sbjct: 120 DKYAIAGAYWPPQYVIMDG 138

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 22/219 (10%), Positives = 48/219 (21%), Gaps = 59/219 (26%)

Query: 271 GLAWNKEFRNILA-SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS 329
               + +  N+ + +     Q+ + D +  +                             
Sbjct: 23  QQMNDWDLENLFSVTLRDAGQIALIDGSTYEIK--------------------------- 55

Query: 330 FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 389
                      + T           V          + FV+   DG +   D+   +   
Sbjct: 56  ---------TVLDTGYA--------VHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTT 97

Query: 390 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 449
            +  +  S           +          +A         + D    +P  I S     
Sbjct: 98  VAEIKIGS----EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153

Query: 450 ---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479
                      V ++  S   P  +      GK+ + D 
Sbjct: 154 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	502
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.68
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.44
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.37
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.2
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.2
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.17
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.14
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.13
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.08
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.07
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.0
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.98
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.94
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.94
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.94
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.93
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.88
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.76
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.69
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.6
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.52
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.43
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.37
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.26
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.21
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.19
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.16
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.9
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.81
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.52
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.33
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.24
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.23
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.2
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.09
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.75
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.73
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.49
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.42
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.21
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.21
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.1
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.93
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.22
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.14
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.08
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.08
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.76
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.68
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.26
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.84
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.82
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.78
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.36
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.01
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	89.81
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	86.56
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.18
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	84.8
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	82.68

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-38  Score=304.52  Aligned_cols=287  Identities=17%  Similarity=0.302  Sum_probs=237.2

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|.+.|.+++|+|++++|++|+ ++   .++||.+....... .+.............|++|       +|++++|++|+
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg---~V~iWd~~~~~~~~-~~~~~~~~~h~~~I~~v~~-------s~dg~~l~s~~  116 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KG---CVKVWDISHPGNKS-PVSQLDCLNRDNYIRSCKL-------LPDGCTLIVGG  116 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BS---EEEEEETTSTTCCS-CSEEEECSCTTSBEEEEEE-------CTTSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CC---EEEEEEccCCcccc-eeEEeeecCCCCcEEEEEE-------cCCCCEEEEee
Confidence            5889999999999999999986 54   57777766543311 1111111111233468887       79999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .||.|+|||+....                         ......+..|...|.+++|+|+ +.++++++.++.|++|++
T Consensus       117 ~dg~i~iwd~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_         117 EASTLSIWDLAAPT-------------------------PRIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             SSSEEEEEECCCC---------------------------EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred             cccccccccccccc-------------------------cccccccccccccccccccccc-cccccccccccccccccc
Confidence            99999999986422                         1222344578999999999999 569999999999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      .++++......|...|.+++|++++ ..+++++.|+.|++||+++++... ...+...|.+++|+|++. ++++++.+|.
T Consensus       171 ~~~~~~~~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~~-~~~~~~~i~~l~~~~~~~-~l~~~~~d~~  247 (337)
T d1gxra_         171 HNQTLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQ-QHDFTSQIFSLGYCPTGE-WLAVGMESSN  247 (337)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             ccccccccccccccccccccccccc-cccccccccccccccccccceeec-ccccccceEEEEEccccc-ccceeccccc
Confidence            9999999999999999999999998 899999999999999999877554 567888999999999865 8999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEE
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA  456 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  456 (502)
                      |++||++..          .......|...|++++|+|++ .+|++++.||.|++||+.+++.  +... .|.+.|++++
T Consensus       248 i~i~d~~~~----------~~~~~~~~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~  313 (337)
T d1gxra_         248 VEVLHVNKP----------DKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS--IFQS-KESSSVLSCD  313 (337)
T ss_dssp             EEEEETTSS----------CEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE--EEEE-ECSSCEEEEE
T ss_pred             ccccccccc----------ccccccccccccceEEECCCC-CEEEEEeCCCeEEEEECCCCCE--EEEc-cCCCCEEEEE
Confidence            999999865          345677899999999999998 8999999999999999999884  3333 3678999999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEC
Q 010769          457 FSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       457 ~spd~~~llasg~~dg~i~vwd~  479 (502)
                      |+|++++ |++|+.||+|+|||+
T Consensus       314 ~s~d~~~-l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         314 ISVDDKY-IVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECTTSCE-EEEEETTSCEEEEEE
T ss_pred             EeCCCCE-EEEEeCCCeEEEEEE
Confidence            9999995 899999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-37  Score=294.39  Aligned_cols=290  Identities=17%  Similarity=0.256  Sum_probs=224.8

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d  218 (502)
                      ......++++|+|+.|+.+...      .|++|+........++..|..    ..+|++|       +|+|++||+|+.|
T Consensus        17 r~~~~~~a~~~~g~~l~~~~~~------~v~i~~~~~~~~~~~~~~H~~----~v~~~~~-------sp~g~~latg~~d   79 (311)
T d1nr0a1          17 RGTAVVLGNTPAGDKIQYCNGT------SVYTVPVGSLTDTEIYTEHSH----QTTVAKT-------SPSGYYCASGDVH   79 (311)
T ss_dssp             TTCCCCCEECTTSSEEEEEETT------EEEEEETTCSSCCEEECCCSS----CEEEEEE-------CTTSSEEEEEETT
T ss_pred             CCCeEEEEEcCCCCEEEEEeCC------EEEEEECCCCceeEEEcCCCC----CEEEEEE-------eCCCCeEeccccC
Confidence            3456788999999999988533      445555444333344444432    3378888       7999999999999


Q ss_pred             CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec--CCcEEEEEC
Q 010769          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--DKQVKIWDV  296 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--Dg~v~vwd~  296 (502)
                      |.|+||++......                         ....+..|..+|.+++|+|+ +.+|++++.  +..++||++
T Consensus        80 g~i~iwd~~~~~~~-------------------------~~~~~~~~~~~v~~v~~s~d-~~~l~~~~~~~~~~~~v~~~  133 (311)
T d1nr0a1          80 GNVRIWDTTQTTHI-------------------------LKTTIPVFSGPVKDISWDSE-SKRIAAVGEGRERFGHVFLF  133 (311)
T ss_dssp             SEEEEEESSSTTCC-------------------------EEEEEECSSSCEEEEEECTT-SCEEEEEECCSSCSEEEEET
T ss_pred             ceEeeeeeeccccc-------------------------cccccccccCcccccccccc-cccccccccccccccccccc
Confidence            99999999753322                         12234579999999999999 558888875  456999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                      .+++....+.+|...|++++|+|++..+|++|+.||.|++||+++.+.......+...|.++.|+|++. ++++++.||.
T Consensus       134 ~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~  212 (311)
T d1nr0a1         134 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGT  212 (311)
T ss_dssp             TTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             ccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccc-cccccccccc
Confidence            999999999999999999999999966789999999999999998877666667888999999999865 8999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC---CCEE
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA---GAVF  453 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~---~~v~  453 (502)
                      |++||+++.......  ........+|...|++++|+|++ .+|++|+.||.|+|||+++++  ++..+..|.   ..+.
T Consensus       213 v~~~d~~~~~~~~~~--~~~~~~~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~--~~~~l~~~~~~~~~~~  287 (311)
T d1nr0a1         213 IVLYNGVDGTKTGVF--EDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLK--VEKTIPVGTRIEDQQL  287 (311)
T ss_dssp             EEEEETTTCCEEEEC--BCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEEECCSSGGGCEE
T ss_pred             ccccccccccccccc--cccccccccccccccccccCCCC-CEEEEEeCCCeEEEEECCCCc--EEEEEECCCCccceEE
Confidence            999999876211100  01112234688999999999998 899999999999999999887  444554443   3455


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          454 SVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       454 ~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      ++.|++  .+ |++++.||.|++||+.
T Consensus       288 ~~~~~~--~~-l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         288 GIIWTK--QA-LVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEECS--SC-EEEEETTCCEEEEETT
T ss_pred             EEEecC--CE-EEEEECCCEEEEEeCC
Confidence            666654  43 7788999999999973

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-36  Score=283.35  Aligned_cols=284  Identities=22%  Similarity=0.376  Sum_probs=242.5

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.+++|+|++++||+|+.++   .++||.+.....  ...+..|.    ....++.|       ++++.++++++
T Consensus        15 GH~~~I~~l~~sp~~~~l~s~s~Dg---~i~iWd~~~~~~--~~~~~~h~----~~V~~~~~-------~~~~~~~~~~~   78 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSVMVSASEDA---TIKVWDYETGDF--ERTLKGHT----DSVQDISF-------DHSGKLLASCS   78 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSS---CEEEEETTTCCC--CEEECCCS----SCEEEEEE-------CTTSSEEEEEE
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCE--EEEEeCCC----CcEEEEee-------ecccccccccc
Confidence            5889999999999999999999887   567777654432  11122222    22356766       78999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .++.+.+|+....                           .....+.+|...+.++.|+|+ +..+++++.|+.+++||+
T Consensus        79 ~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~  130 (317)
T d1vyhc1          79 ADMTIKLWDFQGF---------------------------ECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEV  130 (317)
T ss_dssp             TTSCCCEEETTSS---------------------------CEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET
T ss_pred             ccccccccccccc---------------------------ccccccccccccceeeeccCC-CceEEeeccCcceeEeec
Confidence            9999999998642                           222344578999999999999 568999999999999999


Q ss_pred             CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC-----------
Q 010769          297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE-----------  365 (502)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~-----------  365 (502)
                      .+++.+..+.+|...+.+++|++++ .+|++++.|+.|++|++++.........+...+.++.|+|...           
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  209 (317)
T d1vyhc1         131 QTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE  209 (317)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             ccceeeeEEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccce
Confidence            9999999999999999999999998 8999999999999999998887766667788899999987542           


Q ss_pred             --------CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          366 --------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       366 --------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                              .++++++.||.|++|+++++         .++..+.+|...|.+++|+|++ .+|++|+.||.|++||+.++
T Consensus       210 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         210 TKKSGKPGPFLLSGSRDKTIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             -------CCEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTS
T ss_pred             eeeeccCCceeEeccCCCEEEEEECCCC---------cEEEEEeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCC
Confidence                    36889999999999999986         7888999999999999999998 89999999999999999998


Q ss_pred             CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          438 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      +  ++..+.+|.+.|++++|+|++++ |++|+.||+|+|||
T Consensus       280 ~--~~~~~~~h~~~V~~~~~s~~~~~-l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         280 R--CMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWE  317 (317)
T ss_dssp             C--CCEEEECCSSCEEEEEECSSSSC-EEEEETTSEEEEEC
T ss_pred             c--EEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCeEEEeC
Confidence            7  46677889999999999999995 88999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9e-36  Score=291.63  Aligned_cols=298  Identities=21%  Similarity=0.329  Sum_probs=226.1

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeee-------------eccccCCCcceeeeecCCC
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH-------------HHIIIPAFPLCMAWLDCPL  203 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~~~w~~~~~  203 (502)
                      +|.+.|++++|+|+|++||+|+ ++   .++||....... ...+..+             ..........|++|     
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~---~i~iW~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-----  129 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NK---TTQVYRVSDGSL-VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF-----  129 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BS---CEEEEETTTCCE-EEEECC-----------------CCCCBEEEEEE-----
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CC---eEEEEEecccce-EeeecccccccccccccccccccCCCCCEEEEEE-----
Confidence            4889999999999999999986 54   567776543321 0000000             00011122356666     


Q ss_pred             CCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769          204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                        +|++++|++|+.||.|++|+....                           .......+|...|.++.|+++ ...++
T Consensus       130 --s~~~~~l~s~~~dg~v~i~~~~~~---------------------------~~~~~~~~h~~~v~~~~~~~~-~~~~~  179 (388)
T d1erja_         130 --SPDGKFLATGAEDRLIRIWDIENR---------------------------KIVMILQGHEQDIYSLDYFPS-GDKLV  179 (388)
T ss_dssp             --CTTSSEEEEEETTSCEEEEETTTT---------------------------EEEEEECCCSSCEEEEEECTT-SSEEE
T ss_pred             --CCCCCcceeccccccccccccccc---------------------------ccccccccccccccccccccc-ccccc
Confidence              899999999999999999998652                           222344579999999999998 56899


Q ss_pred             EEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce-------EeecCCeE
Q 010769          284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-------WAVAADVE  356 (502)
Q Consensus       284 sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~  356 (502)
                      +|+.++.|++||+.+.........+.. ..++.+++..+.+|++|+.||.|++|++++.......       ..|...|.
T Consensus       180 ~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~  258 (388)
T d1erja_         180 SGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY  258 (388)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEE
T ss_pred             ccccceeeeeeeccccccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEE
Confidence            999999999999999988877765554 5556666655489999999999999999877644321       24567899


Q ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC---CCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD---STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      +++|+|++. +|++++.||.|++||+++......   ............|...|++++|+|++ .+|++|+.||.|++||
T Consensus       259 ~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd  336 (388)
T d1erja_         259 SVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWD  336 (388)
T ss_dssp             EEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEE
T ss_pred             EEEECCCCC-EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEE
Confidence            999999865 899999999999999987643211   11123455667899999999999998 8999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCCEEEEEE------cCCCCcEEEEEeCCCcEEEEECC
Q 010769          434 LSNNQPSCIASRNPKAGAVFSVAF------SEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~~~------spd~~~llasg~~dg~i~vwd~~  480 (502)
                      +.+++  ++..+.+|.+.|.++++      +|++. +|++|+.||+|+||+++
T Consensus       337 ~~~~~--~~~~l~~H~~~V~~~~~~~~~~~spd~~-~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         337 KKSGN--PLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TTTCC--EEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEE
T ss_pred             CCCCc--EEEEEeCCCCCEEEEEEecCcccCCCCC-EEEEEeCCCEEEEEeee
Confidence            99988  57778899999999975      56787 59999999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.5e-35  Score=280.28  Aligned_cols=245  Identities=16%  Similarity=0.204  Sum_probs=209.4

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+|+.||.++ ++.|.+|++....                           ....+.+|...|++++|+|+ +++||+|
T Consensus        26 ~~~g~~l~~~~-~~~v~i~~~~~~~---------------------------~~~~~~~H~~~v~~~~~sp~-g~~latg   76 (311)
T d1nr0a1          26 TPAGDKIQYCN-GTSVYTVPVGSLT---------------------------DTEIYTEHSHQTTVAKTSPS-GYYCASG   76 (311)
T ss_dssp             CTTSSEEEEEE-TTEEEEEETTCSS---------------------------CCEEECCCSSCEEEEEECTT-SSEEEEE
T ss_pred             cCCCCEEEEEe-CCEEEEEECCCCc---------------------------eeEEEcCCCCCEEEEEEeCC-CCeEecc
Confidence            89999999986 5679999997532                           22234589999999999999 6799999


Q ss_pred             ecCCcEEEEECCCCeee--EEeccCCCCeEEEEEcCCCCcEEEEEEC--CCcEEEEeCCCCCCccceEeecCCeEEEEeC
Q 010769          286 SADKQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSF--DRSVVMKDARISTHSGFKWAVAADVESLAWD  361 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~  361 (502)
                      +.||+|+|||+.++...  ..+..|..+|.+++|+|++ .+|++++.  ++.+++|++.+.+.......|...|.+++|+
T Consensus        77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~  155 (311)
T d1nr0a1          77 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK  155 (311)
T ss_dssp             ETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEEC
T ss_pred             ccCceEeeeeeeccccccccccccccCccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999887643  5578899999999999999 77888875  4669999999888777677788899999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC  441 (502)
Q Consensus       362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~  441 (502)
                      |+++.++++|+.||.|++||+++.         .....+..|..+|+++.|+|++ .+|++++.|+.|++||+.++....
T Consensus       156 ~~~~~~l~sgs~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~~  225 (311)
T d1nr0a1         156 PSRPFRIISGSDDNTVAIFEGPPF---------KFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTG  225 (311)
T ss_dssp             SSSSCEEEEEETTSCEEEEETTTB---------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ccceeeeccccccccccccccccc---------ccccccccccccccccccCccc-cccccccccccccccccccccccc
Confidence            998878999999999999999986         7788888999999999999998 899999999999999999887433


Q ss_pred             EEE-----ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          442 IAS-----RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       442 ~~~-----~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ...     ..+|.+.|++++|+|++++ |++|+.||.|+|||+.++++++.+..+
T Consensus       226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~-l~tgs~Dg~v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         226 VFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cccccccccccccccccccccCCCCCE-EEEEeCCCeEEEEECCCCcEEEEEECC
Confidence            322     2357889999999999995 889999999999999999988765433

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.9e-35  Score=284.02  Aligned_cols=290  Identities=14%  Similarity=0.147  Sum_probs=218.4

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC-CceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d  218 (502)
                      ++|.+++|+|++++||+|+.++   .+.||.++...... ..+.. |..    ...+++|       +|++++||+|+.|
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~---~i~iw~~~~~~~~~~~~l~g-H~~----~V~~l~f-------sp~~~~l~s~s~D   72 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNH---EVHIYEKSGNKWVQVHELKE-HNG----QVTGVDW-------APDSNRIVTCGTD   72 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSS---EEEEEEEETTEEEEEEEEEC-CSS----CEEEEEE-------ETTTTEEEEEETT
T ss_pred             CCeEEEEECCCCCEEEEEeCCC---EEEEEECCCCCEEEEEEecC-CCC----CEEEEEE-------CCCCCEEEEEECC
Confidence            5699999999999999998776   56777765432100 01122 322    2368877       7899999999999


Q ss_pred             CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769          219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA  298 (502)
Q Consensus       219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~  298 (502)
                      +.|+||++....                         ......+.+|...|++++|+|+ ++.|++|+.|++|++|++..
T Consensus        73 ~~i~vWd~~~~~-------------------------~~~~~~~~~~~~~v~~i~~~p~-~~~l~~~s~d~~i~i~~~~~  126 (371)
T d1k8kc_          73 RNAYVWTLKGRT-------------------------WKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQ  126 (371)
T ss_dssp             SCEEEEEEETTE-------------------------EEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEET
T ss_pred             CeEEEEeecccc-------------------------cccccccccccccccccccccc-cccceeecccCcceeeeeec
Confidence            999999986421                         1122334578999999999999 56999999999999999876


Q ss_pred             Cee----eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc------------------cceEeecCCeE
Q 010769          299 GKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS------------------GFKWAVAADVE  356 (502)
Q Consensus       299 ~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------------------~~~~~~~~~v~  356 (502)
                      ...    ......|...|.+++|+|++ .+|++|+.|++|++|++......                  .....+...|.
T Consensus       127 ~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  205 (371)
T d1k8kc_         127 ENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH  205 (371)
T ss_dssp             TTTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE
T ss_pred             ccccccccccccccccccccccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEE
Confidence            542    33456789999999999998 89999999999999998754311                  11124566799


Q ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769          357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN  436 (502)
Q Consensus       357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~  436 (502)
                      +++|+|++. ++++++.||.|++||+++.         ..+..+..|..+|.+++|+|++ .+|++| .|+.+++|....
T Consensus       206 ~~~~s~~g~-~l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~s~~fs~d~-~~la~g-~d~~~~~~~~~~  273 (371)
T d1k8kc_         206 GVCFSANGS-RVAWVSHDSTVCLADADKK---------MAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDS  273 (371)
T ss_dssp             EEEECSSSS-EEEEEETTTEEEEEEGGGT---------TEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEET
T ss_pred             EEEeecccc-cccccccCCcceEEeeecc---------cceeeeecccccceeeeecCCC-CEEEEE-cCCceEEEEeeC
Confidence            999999875 7999999999999999876         7788899999999999999987 666655 477777765432


Q ss_pred             CCeeEEE---------------------------------------EecCCCCCEEEEEEcCCCC---cEEEEEeCCCcE
Q 010769          437 NQPSCIA---------------------------------------SRNPKAGAVFSVAFSEDSP---FVLAIGGSKGKL  474 (502)
Q Consensus       437 ~~~~~~~---------------------------------------~~~~~~~~v~~~~~spd~~---~llasg~~dg~i  474 (502)
                      .......                                       ....|.+.|+++++.+.+.   ..|+|+|.||.|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v  353 (371)
T d1k8kc_         274 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM  353 (371)
T ss_dssp             TTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred             CCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeE
Confidence            2100000                                       0013778899999977542   258999999999


Q ss_pred             EEEECCCCc
Q 010769          475 EIWDTLSDA  483 (502)
Q Consensus       475 ~vwd~~~~~  483 (502)
                      +|||+++.+
T Consensus       354 ~iW~~~~~~  362 (371)
T d1k8kc_         354 SIWDVRSLE  362 (371)
T ss_dssp             EEEEHHHHH
T ss_pred             EEEeCCcCh
Confidence            999996643

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-33  Score=268.43  Aligned_cols=287  Identities=18%  Similarity=0.318  Sum_probs=234.1

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|.+.|.+++|+|++++||+|+.++   .++||.+.....  ...+..|    .....+++|       +|++++|++|
T Consensus        52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg---~v~iWd~~~~~~--~~~~~~~----~~~v~~v~~-------~~~~~~l~~~  115 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSRLLVSASQDG---KLIIWDSYTTNK--VHAIPLR----SSWVMTCAY-------APSGNYVACG  115 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTT---EEEEEETTTTEE--EEEEECS----CSCEEEEEE-------CTTSSEEEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCC---ceeeeeccccee--EEEEecc----cccEEeeEe-------eccceeeeee
Confidence            35899999999999999999999887   456665443321  1111122    233467777       7899999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.++.|++|+.......                       ......+.+|...+....+...  ..++.+..+.....|.
T Consensus       116 ~~d~~i~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  170 (340)
T d1tbga_         116 GLDNICSIYNLKTREGN-----------------------VRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWD  170 (340)
T ss_dssp             ETTCCEEEEESSSSCSC-----------------------CCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEE
T ss_pred             cccceeecccccccccc-----------------------cccceecccccccccccccccc--cccccccccccccccc
Confidence            99999999998643221                       2222344567777777766655  4788899999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      ............+...+....+.+.+ .++++|+.|+.|++||+++.........|...|.+++|+|++. +|++|+.||
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~  248 (340)
T d1tbga_         171 IETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDA  248 (340)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             cccccccccccccceeEeeecccccc-ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCC-EEEEEeCCC
Confidence            98888888788888999999999988 8999999999999999999887766667889999999999865 899999999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEE--EecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFT--LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF  453 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  453 (502)
                      .|++|+++..         .....  ...|...|++++|+|++ .+|++|+.||.|++||+.+++  ++..+.+|.++|+
T Consensus       249 ~i~~~~~~~~---------~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~--~~~~~~~H~~~V~  316 (340)
T d1tbga_         249 TCRLFDLRAD---------QELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVS  316 (340)
T ss_dssp             CEEEEETTTT---------EEEEEECCTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEE
T ss_pred             eEEEEeeccc---------ccccccccccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCc--EEEEEcCCCCCEE
Confidence            9999999876         33333  34667889999999998 899999999999999999887  6778889999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          454 SVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       454 ~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      +++|+|++++ |++|+.||.|+|||
T Consensus       317 ~l~~s~d~~~-l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         317 CLGVTDDGMA-VATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECTTSSC-EEEEETTSCEEEEC
T ss_pred             EEEEeCCCCE-EEEEccCCEEEEeC
Confidence            9999999995 89999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-34  Score=273.87  Aligned_cols=295  Identities=13%  Similarity=0.156  Sum_probs=220.0

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCC---ceeeeeccccCCCcceeeeecCCCCCCC--CCCEEEE
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP---NLYVHHHIIIPAFPLCMAWLDCPLKDRE--KGNFMAV  214 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~w~~~~~~~s~--~~~~la~  214 (502)
                      ..+.++.|+|+++.|++++...    ..|+.++.......   .+..|+...    ..|++|       +|  ++.+||+
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~----~~i~~~~~~~~~~~~~~~~~gh~~~~----v~~v~f-------sP~~~g~~las   82 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKS----AFVRCLDDGDSKVPPVVQFTGHGSSV----VTTVKF-------SPIKGSQYLCS   82 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTE----EEEEECCSSCCSSCSEEEECTTTTSC----EEEEEE-------CSSTTCCEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCC----EEEEEEeCCCCCccceEEEeCCCCCC----EEEEEE-------eeCCCCCEEEE
Confidence            3578999999999999886442    34555654433211   223344322    367877       44  6789999


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe--cCCcEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS--ADKQVK  292 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs--~Dg~v~  292 (502)
                      |+.||+|+||++..........                   ......+..|..+|.+++|++++ .+|++++  .++.++
T Consensus        83 gs~Dg~i~iWd~~~~~~~~~~~-------------------~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~  142 (325)
T d1pgua1          83 GDESGKVIVWGWTFDKESNSVE-------------------VNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGV  142 (325)
T ss_dssp             EETTSEEEEEEEEEEGGGTEEE-------------------EEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEE
T ss_pred             EeCCCCEEEeeecCCcceeeee-------------------cccccccccccCcEEEEEECCCC-CccceeeccccceEE
Confidence            9999999999986433222111                   11122344688999999999995 4666655  467899


Q ss_pred             EEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce---EeecCCeEEEEeCCCCCCEEE
Q 010769          293 IWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       293 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~v~~~p~~~~~l~  369 (502)
                      +|+..+++++..+.+|...|.+++|+|+++.++++++.|+.|++|+++..+.....   ..+...|.+++|+|++..+++
T Consensus       143 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~  222 (325)
T d1pgua1         143 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI  222 (325)
T ss_dssp             EEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred             EEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecc
Confidence            99999999999999999999999999998777899999999999998765543322   245667999999998777899


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEc---CCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN---PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      +++.||.|++||+++.         ..+..+.+|..++.++.|+   |++ .+|++++.|+.|+|||++++++.......
T Consensus       223 s~~~d~~i~iwd~~~~---------~~~~~l~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         223 TVGSDRKISCFDGKSG---------EFLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             EEETTCCEEEEETTTC---------CEEEECCBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ccccccceeeeeeccc---------cccccccccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            9999999999999986         6778888888887766665   556 89999999999999999998854444444


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      .+...+..+++.+.+...|++|+.||.|+|||+
T Consensus       293 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            444334444444333225889999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-33  Score=268.95  Aligned_cols=248  Identities=15%  Similarity=0.211  Sum_probs=211.6

Q ss_pred             cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769          193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL  272 (502)
Q Consensus       193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  272 (502)
                      ..|++|       +|+|++||+|+ ||.|+|||+.......+                      .......+|...|++|
T Consensus        54 V~~v~f-------s~~g~~latg~-dg~V~iWd~~~~~~~~~----------------------~~~~~~~~h~~~I~~v  103 (337)
T d1gxra_          54 VCAVTI-------SNPTRHVYTGG-KGCVKVWDISHPGNKSP----------------------VSQLDCLNRDNYIRSC  103 (337)
T ss_dssp             CCEEEE-------CSSSSEEEEEC-BSEEEEEETTSTTCCSC----------------------SEEEECSCTTSBEEEE
T ss_pred             EEEEEE-------CCCCCEEEEEE-CCEEEEEEccCCcccce----------------------eEEeeecCCCCcEEEE
Confidence            477777       89999999998 89999999975433222                      1222345799999999


Q ss_pred             EecCCCCcEEEEEecCCcEEEEECCCC--eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe
Q 010769          273 AWNKEFRNILASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  350 (502)
                      +|+|+ +++|++|+.||+|++||+...  +....+..|...+.+++|+|++ .++++++.++.|++|++++.+.......
T Consensus       104 ~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~  181 (337)
T d1gxra_         104 KLLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQG  181 (337)
T ss_dssp             EECTT-SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEcCC-CCEEEEeeccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            99999 569999999999999998744  5667788899999999999998 8999999999999999998877666667


Q ss_pred             ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      +...+.+++|++++. .+++++.+|.|++||+++.         ..+.. ..|...|.+++|+|++ .+|++++.|+.|+
T Consensus       182 ~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~---------~~~~~-~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~  249 (337)
T d1gxra_         182 HTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREG---------RQLQQ-HDFTSQIFSLGYCPTG-EWLAVGMESSNVE  249 (337)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTT---------EEEEE-EECSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred             ccccccccccccccc-ccccccccccccccccccc---------eeecc-cccccceEEEEEcccc-cccceeccccccc
Confidence            888999999999865 8999999999999999976         44444 4588999999999998 8999999999999


Q ss_pred             EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +||++...   ......|...|++++|+|+++ +|++|+.||.|++||+.+++.+...
T Consensus       250 i~d~~~~~---~~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~~~~~~~  303 (337)
T d1gxra_         250 VLHVNKPD---KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             EEETTSSC---EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cccccccc---cccccccccccceEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEEc
Confidence            99999887   345677889999999999999 5889999999999999999887553

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.4e-33  Score=269.97  Aligned_cols=279  Identities=19%  Similarity=0.292  Sum_probs=210.8

Q ss_pred             CCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccce
Q 010769          190 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV  269 (502)
Q Consensus       190 ~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  269 (502)
                      .....|++|       +|+|++||+|+ |+.|+||++..+..+.......   ..      ..............|...|
T Consensus        62 ~~~V~~l~f-------s~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~V  124 (388)
T d1erja_          62 TSVVCCVKF-------SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDS---AA------NKDPENLNTSSSPSSDLYI  124 (388)
T ss_dssp             SSCCCEEEE-------CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------CCCCBE
T ss_pred             CCcEEEEEE-------CCCCCEEEEEe-CCeEEEEEecccceEeeecccc---cc------cccccccccccccCCCCCE
Confidence            344588888       89999999997 8999999998655433211100   00      0001112223345788999


Q ss_pred             eeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE
Q 010769          270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       270 ~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  349 (502)
                      ++|+|+|+ +++|++|+.||+|++|+...++.+..+.+|...|.++.|++++ ..+++++.++.+++||+++..... ..
T Consensus       125 ~~l~~s~~-~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~-~~  201 (388)
T d1erja_         125 RSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSL-TL  201 (388)
T ss_dssp             EEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE-EE
T ss_pred             EEEEECCC-CCcceeccccccccccccccccccccccccccccccccccccc-ccccccccceeeeeeecccccccc-cc
Confidence            99999999 6799999999999999999999999999999999999999998 889999999999999999876554 34


Q ss_pred             eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      .+.....++.+.+..+.+|++++.||.|++|++++.......  ........+|...|++++|+|++ .+|++|+.||.|
T Consensus       202 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i  278 (388)
T d1erja_         202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL--DSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSV  278 (388)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE--C------CCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceee--ccccccccCCCCCEEEEEECCCC-CEEEEEECCCcE
Confidence            455666777777766679999999999999999876211000  01122335688999999999998 899999999999


Q ss_pred             EEEECCCCCe----------eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          430 KLWDLSNNQP----------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       430 ~vwd~~~~~~----------~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      ++||+++...          .+......|...|++++|+|++++ |++|+.||.|++||+.+++++..+.+|.
T Consensus       279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~sg~~dg~i~vwd~~~~~~~~~l~~H~  350 (388)
T d1erja_         279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSGNPLLMLQGHR  350 (388)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEeccCCccccccccccccceeeecccccceEEEEEECCCCCE-EEEEeCCCEEEEEECCCCcEEEEEeCCC
Confidence            9999986532          234556678899999999999994 8999999999999999999988766554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-32  Score=268.33  Aligned_cols=253  Identities=16%  Similarity=0.206  Sum_probs=203.8

Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccccee
Q 010769          191 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL  270 (502)
Q Consensus       191 ~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  270 (502)
                      ....|++|       +|+|++||+|+.+|.|+||++...+                         ......+.+|.++|+
T Consensus         8 ~pIt~~~~-------s~dg~~la~~~~~~~i~iw~~~~~~-------------------------~~~~~~l~gH~~~V~   55 (371)
T d1k8kc_           8 EPISCHAW-------NKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHNGQVT   55 (371)
T ss_dssp             SCCCEEEE-------CTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCSSCEE
T ss_pred             CCeEEEEE-------CCCCCEEEEEeCCCEEEEEECCCCC-------------------------EEEEEEecCCCCCEE
Confidence            44578888       8999999999999999999986421                         122334568999999


Q ss_pred             eEEecCCCCcEEEEEecCCcEEEEECCCCee--eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce
Q 010769          271 GLAWNKEFRNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK  348 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  348 (502)
                      +|+|+|+ +++|++|+.|++|+|||+.++..  ...+.+|...|++++|+|++ +.|++|+.+++|++|++.........
T Consensus        56 ~l~fsp~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~  133 (371)
T d1k8kc_          56 GVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVC  133 (371)
T ss_dssp             EEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             EEEECCC-CCEEEEEECCCeEEEEeeccccccccccccccccccccccccccc-ccceeecccCcceeeeeecccccccc
Confidence            9999999 57999999999999999987754  44557789999999999999 89999999999999998776543222


Q ss_pred             ----EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC---------CCCCCccEEEecCCCCeeEEEEcCC
Q 010769          349 ----WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD---------STSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       349 ----~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                          ..+...|.+++|+|++. +|++|+.||.|++|++........         ......+.....|...|.+++|+|+
T Consensus       134 ~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  212 (371)
T d1k8kc_         134 KHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN  212 (371)
T ss_dssp             EEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred             ccccccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc
Confidence                23567899999999865 899999999999999876532111         0112345666789999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      + .+|++++.|+.|++||+..++  .+..+..|..+|.+++|+|++. +|++ |.|+.+++|......
T Consensus       213 g-~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~s~~fs~d~~-~la~-g~d~~~~~~~~~~~~  275 (371)
T d1k8kc_         213 G-SRVAWVSHDSTVCLADADKKM--AVATLASETLPLLAVTFITESS-LVAA-GHDCFPVLFTYDSAA  275 (371)
T ss_dssp             S-SEEEEEETTTEEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTE-EEEE-ETTSSCEEEEEETTT
T ss_pred             c-ccccccccCCcceEEeeeccc--ceeeeecccccceeeeecCCCC-EEEE-EcCCceEEEEeeCCC
Confidence            8 899999999999999999887  5677788899999999999997 4664 567877776655433

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.6e-32  Score=254.93  Aligned_cols=288  Identities=16%  Similarity=0.212  Sum_probs=211.5

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|++++|++|+.++   .+++|.+..... ...+...|.    ....++.|       +|++++++ +
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg---~v~vWd~~~~~~-~~~~~~~h~----~~v~~v~~-------~~~g~~~~-~   72 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSADAEG---HINSWDISTGIS-NRVFPDVHA----TMITGIKT-------TSKGDLFT-V   72 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCCE-EECSSCSCS----SCEEEEEE-------CTTSCEEE-E
T ss_pred             CCCCCCcEEEEECCCCCEEEEEcCCC---eEEEEECCCCcE-EEEEcCCCC----CcEEEEEe-------eccceeec-c
Confidence            45899999999999999999999887   567776544321 001112232    23367777       68887554 5


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|+.+++|++......                        ........|...+.+++|+|++ .+++++ .++.+++|+
T Consensus        73 ~~d~~v~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~s~~g-~~~~~~-~~~~i~~~~  126 (299)
T d1nr0a2          73 SWDDHLKVVPAGGSGVD------------------------SSKAVANKLSSQPLGLAVSADG-DIAVAA-CYKHIAIYS  126 (299)
T ss_dssp             ETTTEEEEECSSSSSSC------------------------TTSCCEEECSSCEEEEEECTTS-SCEEEE-ESSEEEEEE
T ss_pred             cceeeEEEeccCCcccc------------------------cccccccccccccccccccccc-cccccc-ccccccccc
Confidence            56899999998642211                        1111223577889999999994 455544 557899999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLED  374 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~d  374 (502)
                      ..  +.....  ....+.+++|+|++ .+|++|+.||.|++||+++..... ....|...|.+++|+|++. ++++++.+
T Consensus       127 ~~--~~~~~~--~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d  200 (299)
T d1nr0a2         127 HG--KLTEVP--ISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQS  200 (299)
T ss_dssp             TT--EEEEEE--CSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETT
T ss_pred             cc--cccccc--cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            54  333333  34568899999998 899999999999999998776543 3446788999999999865 89999999


Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-CCCEE
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-AGAVF  453 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~  453 (502)
                      |.|++||+.+...      ......+..|..+|++++|+|++ .+|++|+.||.|++||+.+...........| ...|.
T Consensus       201 ~~i~~~~~~~~~~------~~~~~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  273 (299)
T d1nr0a2         201 RKVIPYSVANNFE------LAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN  273 (299)
T ss_dssp             SCEEEEEGGGTTE------ESCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred             ccccccccccccc------ccccccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE
Confidence            9999999987521      12344567799999999999998 9999999999999999998764444444444 45677


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          454 SVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       454 ~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      ++.| +++. .|++|+.||+|+|||+.
T Consensus       274 ~~~~-~~~~-~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         274 SVIW-LNET-TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEE-EETT-EEEEEETTSCEEEEECC
T ss_pred             EEEE-CCCC-EEEEEeCCCEEEEEecc
Confidence            6765 4556 48889999999999983

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-31  Score=250.53  Aligned_cols=250  Identities=22%  Similarity=0.331  Sum_probs=221.6

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||+|+|||+.++..                           ...+.+|...|.+++
T Consensus        21 ~~l~~-------sp~~~~l~s~s~Dg~i~iWd~~~~~~---------------------------~~~~~~h~~~V~~~~   66 (317)
T d1vyhc1          21 TRVIF-------HPVFSVMVSASEDATIKVWDYETGDF---------------------------ERTLKGHTDSVQDIS   66 (317)
T ss_dssp             EEEEE-------CSSSSEEEEEESSSCEEEEETTTCCC---------------------------CEEECCCSSCEEEEE
T ss_pred             EEEEE-------cCCCCEEEEEeCCCeEEEEECCCCCE---------------------------EEEEeCCCCcEEEEe
Confidence            68877       78999999999999999999975332                           234557999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  353 (502)
                      |+|+ +.++++++.++.+.+|+....+....+..|...+.++.|++++ ..+++++.|+.+++||++++........+..
T Consensus        67 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  144 (317)
T d1vyhc1          67 FDHS-GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHRE  144 (317)
T ss_dssp             ECTT-SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             eecc-cccccccccccccccccccccccccccccccccceeeeccCCC-ceEEeeccCcceeEeecccceeeeEEccCCC
Confidence            9999 6699999999999999999999888899999999999999999 8899999999999999999887776677888


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC-----------------
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-----------------  416 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-----------------  416 (502)
                      .+.+++|+|++. ++++++.+|.|++|++++.         .....+..|...+.+++|+|..                 
T Consensus       145 ~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (317)
T d1vyhc1         145 WVRMVRPNQDGT-LIASCSNDQTVRVWVVATK---------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG  214 (317)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred             cceeeecccCCC-EEEEEeCCCeEEEEeeccc---------eeeEEEecCCCCceEEEEeeccccceeeccccceeeeec
Confidence            999999999865 8999999999999999986         6778888999999999998754                 


Q ss_pred             --CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          417 --PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       417 --~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                        ..++++++.|+.|++|++++++  ++..+.+|...|.+++|+|++++ |++|+.||.|+|||+.+++.+..+.+|.
T Consensus       215 ~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~h~  289 (317)
T d1vyhc1         215 KPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNAHE  289 (317)
T ss_dssp             --CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred             cCCceeEeccCCCEEEEEECCCCc--EEEEEeCCCCCEEEEEECCCCCE-EEEEECCCeEEEEECCCCcEEEEEcCCC
Confidence              2478999999999999999887  56777889999999999999995 8899999999999999999887665543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.9e-29  Score=239.53  Aligned_cols=250  Identities=21%  Similarity=0.295  Sum_probs=212.2

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||.|+|||+.+..                           ....+..|...|.+++
T Consensus        59 ~~l~~-------s~~~~~l~sgs~Dg~v~iWd~~~~~---------------------------~~~~~~~~~~~v~~v~  104 (340)
T d1tbga_          59 YAMHW-------GTDSRLLVSASQDGKLIIWDSYTTN---------------------------KVHAIPLRSSWVMTCA  104 (340)
T ss_dssp             EEEEE-------CTTSSEEEEEETTTEEEEEETTTTE---------------------------EEEEEECSCSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEECCCceeeeecccce---------------------------eEEEEecccccEEeeE
Confidence            68888       7999999999999999999997532                           2233457999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCC----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW  349 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  349 (502)
                      |+|+ +.+|++|+.|+.+++|+....    .....+.+|........+...  ..++.+..+.....+............
T Consensus       105 ~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (340)
T d1tbga_         105 YAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             ECTT-SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred             eecc-ceeeeeecccceeecccccccccccccceecccccccccccccccc--ccccccccccccccccccccccccccc
Confidence            9999 569999999999999997654    345667778887777666654  478888999999999988776666566


Q ss_pred             eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769          350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV  429 (502)
Q Consensus       350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i  429 (502)
                      .....+....+.+... ++++|+.++.|++||+++.         .++..+.+|...|++++|+|++ .+|++|+.|+.|
T Consensus       182 ~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~---------~~~~~~~~h~~~i~~v~~~p~~-~~l~s~s~d~~i  250 (340)
T d1tbga_         182 GHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREG---------MCRQTFTGHESDINAICFFPNG-NAFATGSDDATC  250 (340)
T ss_dssp             CCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTT---------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred             ccceeEeeeccccccc-eeEEeecCceEEEEECCCC---------cEEEEEeCCCCCeEEEEECCCC-CEEEEEeCCCeE
Confidence            6777889999988654 8999999999999999986         7788899999999999999998 899999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769          430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY  492 (502)
Q Consensus       430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~  492 (502)
                      ++|+++............+...|.+++|+|+++ +|++|+.||.|+|||+.+++++..+.+|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~H~  312 (340)
T d1tbga_         251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             EEEETTTTEEEEEECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEeecccccccccccccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCCcEEEEEcCCC
Confidence            999999988655566677788899999999999 58999999999999999999887766553

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-30  Score=246.66  Aligned_cols=256  Identities=13%  Similarity=0.147  Sum_probs=195.8

Q ss_pred             CCcceeeeecCCCCCCCCCCEEEEecCCC-cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCc-ccc
Q 010769          191 AFPLCMAWLDCPLKDREKGNFMAVGSMEP-AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDS  268 (502)
Q Consensus       191 ~~~~~~~w~~~~~~~s~~~~~la~g~~dg-~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~  268 (502)
                      ..+++++|       +|+++.||+++.+. .|+.|+.....                         ......+.+| ...
T Consensus        18 ~~~t~l~~-------~~~~~~la~~~~~~~~i~~~~~~~~~-------------------------~~~~~~~~gh~~~~   65 (325)
T d1pgua1          18 NFTTHLSY-------DPTTNAIAYPCGKSAFVRCLDDGDSK-------------------------VPPVVQFTGHGSSV   65 (325)
T ss_dssp             TCCCCCEE-------ETTTTEEEEEETTEEEEEECCSSCCS-------------------------SCSEEEECTTTTSC
T ss_pred             CCeEEEEE-------CCCCCEEEEEeCCCEEEEEEeCCCCC-------------------------ccceEEEeCCCCCC
Confidence            34566766       78899999886553 35556543211                         1112233456 578


Q ss_pred             eeeEEecCC-CCcEEEEEecCCcEEEEECCCCeee--------EEeccCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEE
Q 010769          269 VLGLAWNKE-FRNILASASADKQVKIWDVAAGKCN--------LTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMK  337 (502)
Q Consensus       269 V~~l~~~~~-~~~~l~sgs~Dg~v~vwd~~~~~~~--------~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~vw  337 (502)
                      |++++|+|. .+.+|++|+.||+|+|||+..++..        ..+..|.++|.+++|++++ .+|++++  .++.+++|
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~  144 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFI  144 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC-CccceeeccccceEEEE
Confidence            999999985 3569999999999999998754322        2345688999999999999 6666655  46789999


Q ss_pred             eCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE---EecCCCCeeEEEEcC
Q 010769          338 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT---LHAHDKAVCTISYNP  414 (502)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~sp  414 (502)
                      +..+++.......|...|.+++|+|.++.++++++.||.|++|+++..         +....   ...|...|++++|+|
T Consensus       145 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~---------~~~~~~~~~~~~~~~v~~v~~~p  215 (325)
T d1pgua1         145 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF---------KFSASDRTHHKQGSFVRDVEFSP  215 (325)
T ss_dssp             ETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB---------EEEEEECSSSCTTCCEEEEEECS
T ss_pred             eecccccceeeeecccccccccccccccceEEEeeccccccccccccc---------ccceecccccCCCCccEEeeecc
Confidence            998887766566788999999999998877889999999999998865         22233   346778899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc---CCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          415 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS---EDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       415 ~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s---pd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ++..+|++++.|+.|++||+++++  .+..+.+|..++.++.|+   |++. +|++++.|+.|+|||+.++++++....+
T Consensus       216 d~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         216 DSGEFVITVGSDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             TTCCEEEEEETTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ccceeccccccccceeeeeecccc--ccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            866899999999999999999988  566666666665544444   6777 4889999999999999999988765544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=5e-29  Score=234.50  Aligned_cols=241  Identities=13%  Similarity=0.169  Sum_probs=190.0

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .|++|       +|++++||+|+.||.|+|||+.++....                          ....+|...|++++
T Consensus        16 ~~l~~-------s~dg~~l~s~s~Dg~v~vWd~~~~~~~~--------------------------~~~~~h~~~v~~v~   62 (299)
T d1nr0a2          16 TALSS-------SADGKTLFSADAEGHINSWDISTGISNR--------------------------VFPDVHATMITGIK   62 (299)
T ss_dssp             EEEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEE--------------------------CSSCSCSSCEEEEE
T ss_pred             EEEEE-------CCCCCEEEEEcCCCeEEEEECCCCcEEE--------------------------EEcCCCCCcEEEEE
Confidence            68877       8999999999999999999997533211                          12246899999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCee---eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKC---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA  350 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  350 (502)
                      |+|++  .+++++.|+.+++|++.....   ......+...+.+++|++++ .+++++ .++.+.+|+....    ....
T Consensus        63 ~~~~g--~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~~~~~-~~~~i~~~~~~~~----~~~~  134 (299)
T d1nr0a2          63 TTSKG--DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAA-CYKHIAIYSHGKL----TEVP  134 (299)
T ss_dssp             ECTTS--CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-SCEEEE-ESSEEEEEETTEE----EEEE
T ss_pred             eeccc--eeecccceeeEEEeccCCcccccccccccccccccccccccccc-cccccc-ccccccccccccc----cccc
Confidence            99994  366778899999999865432   12224567889999999998 655554 4678999986431    2334


Q ss_pred             ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769          351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK  430 (502)
Q Consensus       351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~  430 (502)
                      ....+.+++|+|++. ++++|+.+|.|++||+++.        .........|...|++++|+|++ .+|++++.|+.|+
T Consensus       135 ~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~--------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~  204 (299)
T d1nr0a2         135 ISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGA--------SVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVI  204 (299)
T ss_dssp             CSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETT--------EEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred             ccccccccccccccc-ccccccccccccccccccc--------ccccccccccccccccccccccc-ccccccccccccc
Confidence            556789999999865 8999999999999999875        12233456789999999999998 8999999999999


Q ss_pred             EEECCCCCee-EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769          431 LWDLSNNQPS-CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       431 vwd~~~~~~~-~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      +||+.++... ....+..|...|++++|+|++. +|++|+.||.|+|||+.++....
T Consensus       205 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~  260 (299)
T d1nr0a2         205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHP  260 (299)
T ss_dssp             EEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCC
T ss_pred             ccccccccccccccccccccccccccccccccc-ceEEEcCCCEEEEEECCCCCcce
Confidence            9999876532 2345567889999999999999 59999999999999998876543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-28  Score=235.58  Aligned_cols=299  Identities=19%  Similarity=0.215  Sum_probs=209.7

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCC-CcceeeeecCCCCCCCCCCEEEEe
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPA-FPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      .|...|.+++|+|+ ++|++|+.++   .+++|.+.....     .......... ...+..+       ++++.++++|
T Consensus        51 ~H~~~V~~l~~s~~-~~l~s~s~D~---~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  114 (355)
T d1nexb2          51 GHDGGVWALKYAHG-GILVSGSTDR---TVRVWDIKKGCC-----THVFEGHNSTVRCLDIVE-------YKNIKYIVTG  114 (355)
T ss_dssp             CCSSCEEEEEEETT-TEEEEEETTC---CEEEEETTTTEE-----EEEECCCSSCEEEEEEEE-------ETTEEEEEEE
T ss_pred             CCCCCEEEEEEcCC-CEEEEEeccc---cccccccccccc-----cccccccccccccccccc-------ccccceeeee
Confidence            48889999999985 5788888887   556666544321     1111111100 0011112       5789999999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|+.|++|++.................    .................|...|.+...  + ++++++++.|+.|++||
T Consensus       115 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~--~-~~~~~~~~~d~~i~~~d  187 (355)
T d1nexb2         115 SRDNTLHVWKLPKESSVPDHGEEHDYPL----VFHTPEENPYFVGVLRGHMASVRTVSG--H-GNIVVSGSYDNTLIVWD  187 (355)
T ss_dssp             ETTSEEEEEECCC-----------CCCE----EESCTTTCTTEEEEEECCSSCEEEEEE--E-TTEEEEEETTSCEEEEE
T ss_pred             cCCCcEEEEEccCCceeccccccceecc----ceeccccccceeeeeeecccccccccc--c-cceeeeecccceeeeee
Confidence            9999999999976543322111000000    000001111222233456666665544  3 45899999999999999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG  375 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg  375 (502)
                      +.+++.+..+.++...+.++.|+|.+ .++++++.|+.|++|+++++........|...|.+++|++   .++++++.||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg  263 (355)
T d1nexb2         188 VAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADG  263 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS---SEEEEECTTS
T ss_pred             cccccceeeeeccccccccccccccc-eeeecccccceEEeeecccccccccccccccccccccccc---ceeeeeeccc
Confidence            99999999999999999999999998 8999999999999999999888777778889999999985   3899999999


Q ss_pred             eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEE-cCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEE
Q 010769          376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS  454 (502)
Q Consensus       376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~  454 (502)
                      .|++||+++.           ...+..|...+.++.+ ++++ .+|++|+ |+.|+|||+++++.. ...+.+|.++|++
T Consensus       264 ~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~l~~g~-d~~i~vwd~~tg~~~-~~~~~~~~~~V~~  329 (355)
T d1nexb2         264 SIRGWDANDY-----------SRKFSYHHTNLSAITTFYVSD-NILVSGS-ENQFNIYNLRSGKLV-HANILKDADQIWS  329 (355)
T ss_dssp             EEEEEETTTC-----------CEEEEEECTTCCCCCEEEECS-SEEEEEE-TTEEEEEETTTCCBC-CSCTTTTCSEEEE
T ss_pred             cccccccccc-----------ceecccccCCceEEEEEcCCC-CEEEEEe-CCEEEEEECCCCCEE-EEEecCCCCCEEE
Confidence            9999999865           2345566666666654 5544 7776665 899999999998732 1245678899999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          455 VAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       455 ~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      ++|+|+.  ++++++.||.++||-
T Consensus       330 v~~~~~~--~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         330 VNFKGKT--LVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEETTE--EEEEEESSSCEEEEE
T ss_pred             EEEcCCe--EEEEEECCCcEEEEE
Confidence            9999873  688899999866554

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-28  Score=235.22  Aligned_cols=288  Identities=16%  Similarity=0.264  Sum_probs=204.6

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.. ++++++++||+|+.++   .++||.+.....  ...+..|.    ....|++|       +| +++|++|+
T Consensus        10 GH~~~vit-c~~~~~~~l~tgs~Dg---~i~vWd~~~~~~--~~~l~~H~----~~V~~l~~-------s~-~~~l~s~s   71 (355)
T d1nexb2          10 GHMTSVIT-CLQFEDNYVITGADDK---MIRVYDSINKKF--LLQLSGHD----GGVWALKY-------AH-GGILVSGS   71 (355)
T ss_dssp             CCSSSCEE-EEEEETTEEEEEETTT---EEEEEETTTTEE--EEEEECCS----SCEEEEEE-------ET-TTEEEEEE
T ss_pred             CcCCCcEE-EEEECCCEEEEEeCCC---eEEEEECCCCcE--EEEEECCC----CCEEEEEE-------cC-CCEEEEEe
Confidence            47777632 3556789999999887   556665543321  11112232    23378887       45 46899999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .|+.|++|++.......                         ......+...+..+.++++ ..++++++.|++|++|++
T Consensus        72 ~D~~i~iw~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~iw~~  125 (355)
T d1nexb2          72 TDRTVRVWDIKKGCCTH-------------------------VFEGHNSTVRCLDIVEYKN-IKYIVTGSRDNTLHVWKL  125 (355)
T ss_dssp             TTCCEEEEETTTTEEEE-------------------------EECCCSSCEEEEEEEEETT-EEEEEEEETTSEEEEEEC
T ss_pred             ccccccccccccccccc-------------------------ccccccccccccccccccc-cceeeeecCCCcEEEEEc
Confidence            99999999987532211                         1112234455666777787 668999999999999999


Q ss_pred             CCCeeeEEe-----------------------ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC
Q 010769          297 AAGKCNLTL-----------------------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       297 ~~~~~~~~~-----------------------~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  353 (502)
                      .+...+...                       ..|...+.+.  .+++ .+++++..|+.|++||+++.+.......+..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  202 (355)
T d1nexb2         126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTD  202 (355)
T ss_dssp             CC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             cCCceeccccccceeccceeccccccceeeeeeecccccccc--cccc-ceeeeecccceeeeeecccccceeeeecccc
Confidence            876443221                       2233344433  3445 7899999999999999998876655556778


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      .+.++.|+|.+. .+++++.||.|++||++++         ..+..+.+|...|.++++++   .+|++|+.||.|++||
T Consensus       203 ~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~---------~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd  269 (355)
T d1nexb2         203 RIYSTIYDHERK-RCISASMDTTIRIWDLENG---------ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWD  269 (355)
T ss_dssp             CEEEEEEETTTT-EEEEEETTSCEEEEETTTC---------CEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEE
T ss_pred             ccccccccccce-eeecccccceEEeeecccc---------cccccccccccccccccccc---ceeeeeeccccccccc
Confidence            899999999865 8999999999999999986         77888999999999999985   7899999999999999


Q ss_pred             CCCCCeeEEEEecCCCCCEEEE-EEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769          434 LSNNQPSCIASRNPKAGAVFSV-AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~v~~~-~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      +++...  ...  .|...+.++ .|++++. +|++| .||.|+|||+++++.++..+.
T Consensus       270 ~~~~~~--~~~--~~~~~~~~~~~~~~~~~-~l~~g-~d~~i~vwd~~tg~~~~~~~~  321 (355)
T d1nexb2         270 ANDYSR--KFS--YHHTNLSAITTFYVSDN-ILVSG-SENQFNIYNLRSGKLVHANIL  321 (355)
T ss_dssp             TTTCCE--EEE--EECTTCCCCCEEEECSS-EEEEE-ETTEEEEEETTTCCBCCSCTT
T ss_pred             ccccce--ecc--cccCCceEEEEEcCCCC-EEEEE-eCCEEEEEECCCCCEEEEEec
Confidence            998763  222  233444444 4566665 46554 589999999999998865543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.3e-28  Score=237.77  Aligned_cols=299  Identities=14%  Similarity=0.164  Sum_probs=194.8

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.++++++  ++|++|+.++   +++||.........+............-...+...........++.+++++
T Consensus        11 ~~H~~~I~~v~~~~--~~l~S~S~D~---~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_          11 KAHDADIFSVSACN--SFTVSCSGDG---YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTS---EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             CcccCccEEEEEeC--CEEEEEECCC---eEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            45899999998764  6899999876   677777554432111111111000000000111111111112346788999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC----CcEEEEEecCCcE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF----RNILASASADKQV  291 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~~l~sgs~Dg~v  291 (502)
                      +.||.|++|++............                 .........+...+..++|.+..    ..++++++.||+|
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i  148 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFE-----------------KLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT  148 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEE-----------------EECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE
T ss_pred             eCCCcEEEEEccCCCceeeeecc-----------------ccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcE
Confidence            99999999998654433221110                 00111122456678888887753    3589999999999


Q ss_pred             EEEECCCCe------------------eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc------c
Q 010769          292 KIWDVAAGK------------------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------F  347 (502)
Q Consensus       292 ~vwd~~~~~------------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~  347 (502)
                      ++|++....                  .......+...+.+++|+|++  +|++|+.||+|++||+++.+...      .
T Consensus       149 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~  226 (393)
T d1sq9a_         149 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHS  226 (393)
T ss_dssp             EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred             EEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccc
Confidence            999975221                  111223456678999999987  88999999999999999876532      2


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCC---eEEEEECCCCCCCCC----CCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPD----STSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      ...|...|.+++|+|++. +|++|+.|+   .|++||+.++.....    .........+.+|...|++++|+|++ ++|
T Consensus       227 l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-~~l  304 (393)
T d1sq9a_         227 MINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETL  304 (393)
T ss_dssp             --CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS-SEE
T ss_pred             cccccceEEEcccccccc-eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC-Cee
Confidence            235778999999999876 889998886   599999987621100    00012223335799999999999998 899


Q ss_pred             EEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE----EEEEcCCCC
Q 010769          421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF----SVAFSEDSP  462 (502)
Q Consensus       421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~----~~~~spd~~  462 (502)
                      ++|+.|++|+|||+.+++  ++.++.+|.+.|.    .++|+|++.
T Consensus       305 ~S~s~D~~v~vWd~~~g~--~~~~l~gH~~~v~~~~~~~~~~~~~~  348 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVKTKE--RITTLNMHCDDIEIEEDILAVDEHGD  348 (393)
T ss_dssp             EEEETTSEEEEEETTTTE--EEEEEECCGGGCSSGGGCCCBCTTSC
T ss_pred             EEECCCCEEEEEECCCCC--EEEEECCcCCcccCCccEEEECCCCC
Confidence            999999999999999987  6777778865553    355666655

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.4e-28  Score=230.24  Aligned_cols=304  Identities=21%  Similarity=0.262  Sum_probs=209.5

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|.+.|.+ +++++|++||+|+.++   .++||.+..... ...+.. |.    ....++.|       +  +++|++|+
T Consensus        14 GH~~~V~s-~~~~~g~~l~sgs~Dg---~i~vWd~~~~~~-~~~~~~-h~----~~V~~v~~-------~--~~~l~s~s   74 (342)
T d2ovrb2          14 GHDDHVIT-CLQFCGNRIVSGSDDN---TLKVWSAVTGKC-LRTLVG-HT----GGVWSSQM-------R--DNIIISGS   74 (342)
T ss_dssp             CSTTSCEE-EEEEETTEEEEEETTS---CEEEEETTTCCE-EEECCC-CS----SCEEEEEE-------E--TTEEEEEE
T ss_pred             CcCCceEE-EEEECCCEEEEEeCCC---eEEEEECCCCCE-EEEEeC-CC----CCEEEEEe-------C--CCccccce
Confidence            58888865 4788899999999887   567776544321 011122 22    22356666       3  45999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchh-----h--------hhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEE-----K--------KKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      .|+.+++|+...................     .        ................+..+....  ..+.+. ...++
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~  151 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYD-GRRVV  151 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCE--EEEEEC-SSCEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccc--eeeccc-cceee
Confidence            9999999998754322111000000000     0        000000000011111111121222  222233 35788


Q ss_pred             EEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769          284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH  363 (502)
Q Consensus       284 sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~  363 (502)
                      +++.|+.|++||+...+++..+.+|...+..+.+.  + .+|++|+.||.|++||++..+.......+...+.++.+++ 
T Consensus       152 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-  227 (342)
T d2ovrb2         152 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--G-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-  227 (342)
T ss_dssp             EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--S-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-
T ss_pred             eecCCCeEEEeecccceeeEEEcCcccccccccCC--C-CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC-
Confidence            99999999999999999999999998888777664  4 7899999999999999999887776667888899998876 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe---cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769          364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS  440 (502)
Q Consensus       364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~  440 (502)
                        .++++++.||.|++||+...         .....+.   .|...+.++.+++   .++++|+.||+|++||+++++..
T Consensus       228 --~~l~s~s~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i  293 (342)
T d2ovrb2         228 --NILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFI  293 (342)
T ss_dssp             --TEEEEEETTSCEEEEETTTC---------CEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEE
T ss_pred             --CEEEEEcCCCEEEEEecccc---------cccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEE
Confidence              38999999999999999876         4444444   3566777777764   78999999999999999998843


Q ss_pred             EEEEe---cCCCCCEEEEEEcCCCCcEEEEEeCCCc----EEEEECCC
Q 010769          441 CIASR---NPKAGAVFSVAFSEDSPFVLAIGGSKGK----LEIWDTLS  481 (502)
Q Consensus       441 ~~~~~---~~~~~~v~~~~~spd~~~llasg~~dg~----i~vwd~~~  481 (502)
                      .....   .+|.+.|++++|+|++. +||+|+.||+    |++||+..
T Consensus       294 ~~~~~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         294 RNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEecccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCCC
Confidence            32221   35778899999999998 6999999985    99999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4e-28  Score=230.69  Aligned_cols=301  Identities=15%  Similarity=0.172  Sum_probs=207.7

Q ss_pred             CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769          135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~  214 (502)
                      .+.|++.|++|+|+|++++||+|+.++   +++||.++....   ..............+|++|.      .+++.+|++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg---~v~iwd~~~~~~---~~~~~~~~~h~~~V~~v~f~------~~~~~~l~s   74 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDG---SLTVYKFDIQAK---NVDLLQSLRYKHPLLCCNFI------DNTDLQIYV   74 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTS---EEEEEEEETTTT---EEEEEEEEECSSCEEEEEEE------ESSSEEEEE
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCC---eEEEEEccCCCc---ceEEEEecCCCCCEEEEEEe------CCCCCEEEE
Confidence            345889999999999999999999886   778888876543   22111111123445788884      234679999


Q ss_pred             ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                      |+.||.|++|++.......                          .....+........+.+. ...+++++.++++++|
T Consensus        75 g~~d~~v~~w~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w  127 (342)
T d1yfqa_          75 GTVQGEILKVDLIGSPSFQ--------------------------ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVI  127 (342)
T ss_dssp             EETTSCEEEECSSSSSSEE--------------------------ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEE
T ss_pred             cccccceeeeecccccccc--------------------------cccccccccccccccccc-ccccccccccccccee
Confidence            9999999999987532211                          111123333344444554 6799999999999999


Q ss_pred             ECCCCee----eEEeccC--CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE---eecCCeEEEEeCCCCC
Q 010769          295 DVAAGKC----NLTLEHH--TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAADVESLAWDPHAE  365 (502)
Q Consensus       295 d~~~~~~----~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~v~~~p~~~  365 (502)
                      |++.+..    ......+  ......+.+.+.+ ..+++++.|+.|++|+++.........   .....+.+..+.+...
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             eccccccceeeecccccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC
Confidence            9865432    2222222  2334455666666 789999999999999998776544332   2344577777777767


Q ss_pred             CEEEEEeCCCeEEEEECCCCCCCCCCCCC------CccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQ------QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                      ..+++++.+|.+.+|+.............      ........|...|++++|+|++ .+|+||+.||.|+|||+.+++ 
T Consensus       207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~-  284 (342)
T d1yfqa_         207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRK-  284 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE-
T ss_pred             CEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCCCc-
Confidence            78999999999999998765332211000      0111123567789999999998 899999999999999999887 


Q ss_pred             eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       440 ~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                       .+..+..+ ..+..++|+|++. +|++++.|+.+++|...
T Consensus       285 -~l~~~~~~-~~~~~~~~s~~~~-~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         285 -KIKNFAKF-NEDSVVKIACSDN-ILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             -EEEECCCC-SSSEEEEEEECSS-EEEEEEECTHHHHCSSS
T ss_pred             -EEEEecCC-CCCEEEEEEeCCC-EEEEEEcCCcEEEeeee
Confidence             45555432 3455677888888 47777888888888653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-28  Score=240.22  Aligned_cols=257  Identities=14%  Similarity=0.234  Sum_probs=181.1

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcc------cceeeEEecCCCCcEE
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT------DSVLGLAWNKEFRNIL  282 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~------~~V~~l~~~~~~~~~l  282 (502)
                      +++|++|+.|++|+||+....+...+...                     ......|.      ..+..+..+.....++
T Consensus        24 ~~~l~S~S~D~~iriWd~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_          24 NSFTVSCSGDGYLKVWDNKLLDNENPKDK---------------------SYSHFVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             SSEEEEEETTSEEEEEESBCCTTCCGGGG---------------------EEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             CCEEEEEECCCeEEEEECCCCCCCcccce---------------------eEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence            57999999999999999876544332110                     00111222      2333344443334578


Q ss_pred             EEEecCCcEEEEECCCCeeeE-----Ee-----ccCCCCeEEEEEcCCC----CcEEEEEECCCcEEEEeCCCCCCcc--
Q 010769          283 ASASADKQVKIWDVAAGKCNL-----TL-----EHHTDKVQAVAWNHHS----PQILLSGSFDRSVVMKDARISTHSG--  346 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~-----~~-----~~h~~~v~~l~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~--  346 (502)
                      ++++.||.|++|++.......     ..     ..+...+..++|.+..    ..++++++.||.+++|++.......  
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            899999999999976432211     11     2345667888887764    2688999999999999986432100  


Q ss_pred             ----------------ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEE
Q 010769          347 ----------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI  410 (502)
Q Consensus       347 ----------------~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  410 (502)
                                      ....+...+.+++|+|++  +|++|+.||.|++||+++......   ......+.+|..+|+++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~---~~~~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYN---FESQHSMINNSNSIRSV  237 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEE---EECCC---CCCCCEEEE
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccc---cccccccccccceEEEc
Confidence                            001123458899999975  799999999999999987621000   01223456799999999


Q ss_pred             EEcCCCCCEEEEEeCCCc---EEEEECCCCCeeEEE-----------EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010769          411 SYNPLVPNLLATGSTDKM---VKLWDLSNNQPSCIA-----------SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       411 ~~sp~~~~~l~t~s~dg~---i~vwd~~~~~~~~~~-----------~~~~~~~~v~~~~~spd~~~llasg~~dg~i~v  476 (502)
                      +|+|++ .+|++|+.|++   |++||+.+++.....           ...+|.+.|++++|+|+++ +|++|+.|++|+|
T Consensus       238 ~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~v  315 (393)
T d1sq9a_         238 KFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRF  315 (393)
T ss_dssp             EECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEE
T ss_pred             cccccc-ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEE
Confidence            999998 99999999875   899999988743222           2247899999999999999 5999999999999


Q ss_pred             EECCCCccccccccCCC
Q 010769          477 WDTLSDAGISNRFSKYS  493 (502)
Q Consensus       477 wd~~~~~~~~~~~~~~~  493 (502)
                      ||+.+++++..+.+|..
T Consensus       316 Wd~~~g~~~~~l~gH~~  332 (393)
T d1sq9a_         316 WDVKTKERITTLNMHCD  332 (393)
T ss_dssp             EETTTTEEEEEEECCGG
T ss_pred             EECCCCCEEEEECCcCC
Confidence            99999999888766644

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-26  Score=220.64  Aligned_cols=234  Identities=24%  Similarity=0.373  Sum_probs=179.0

Q ss_pred             CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769          207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs  286 (502)
                      ++|++||+|+.||+|+|||+.+++                           ....+.+|...|.+++|+|+   +|++|+
T Consensus        25 ~~g~~l~sgs~Dg~i~vWd~~~~~---------------------------~~~~~~~h~~~V~~v~~~~~---~l~s~s   74 (342)
T d2ovrb2          25 FCGNRIVSGSDDNTLKVWSAVTGK---------------------------CLRTLVGHTGGVWSSQMRDN---IIISGS   74 (342)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCC---------------------------EEEECCCCSSCEEEEEEETT---EEEEEE
T ss_pred             ECCCEEEEEeCCCeEEEEECCCCC---------------------------EEEEEeCCCCCEEEEEeCCC---ccccce
Confidence            468999999999999999997532                           23345689999999999875   899999


Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeEEEEE--------------------------------------cCCCCcEEEEE
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW--------------------------------------NHHSPQILLSG  328 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~--------------------------------------~~~~~~~l~s~  328 (502)
                      .|+++++|+............+...+.....                                      .+.. ..++++
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  153 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG-RRVVSG  153 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS-SCEEEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecccc-ceeeee
Confidence            9999999998876554444333322222211                                      1122 457778


Q ss_pred             ECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCee
Q 010769          329 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC  408 (502)
Q Consensus       329 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~  408 (502)
                      +.++.|++||++..........+...+..+.++  + ..+++++.||.|++||++..         .++..+..|...+.
T Consensus       154 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~s~~~dg~i~~~d~~~~---------~~~~~~~~~~~~v~  221 (342)
T d2ovrb2         154 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--G-IHVVSGSLDTSIRVWDVETG---------NCIHTLTGHQSLTS  221 (342)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--S-SEEEEEETTSCEEEEETTTC---------CEEEEECCCCSCEE
T ss_pred             cCCCeEEEeecccceeeEEEcCcccccccccCC--C-CEEEEEeCCCeEEEeecccc---------eeeeEeccccccee
Confidence            888888888887766555444555556666554  3 48999999999999999986         77888999999999


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE-EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769          409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA-SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN  487 (502)
Q Consensus       409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~  487 (502)
                      ++++++   .+|++++.|+.|++||+...+..... ....|...+.++.++++   ++++|+.||.|+|||+.+++.++.
T Consensus       222 ~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~s~Dg~i~iwd~~tg~~i~~  295 (342)
T d2ovrb2         222 GMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDLKTGEFIRN  295 (342)
T ss_dssp             EEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCC---eeEEEcCCCEEEEEECCCCCEEEE
Confidence            998875   68999999999999999988743322 23456677888888764   589999999999999999998876


Q ss_pred             cc
Q 010769          488 RF  489 (502)
Q Consensus       488 ~~  489 (502)
                      ..
T Consensus       296 ~~  297 (342)
T d2ovrb2         296 LV  297 (342)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.8e-27  Score=222.44  Aligned_cols=266  Identities=14%  Similarity=0.162  Sum_probs=197.1

Q ss_pred             CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..|...|.+++|+|    |++|+.++   ++++|..  ..    ....|..     ...|+.+       ++ +..++++
T Consensus        10 ~gH~~~I~~l~~s~----l~sgs~Dg---~v~~Wd~--~~----~~~~h~~-----~V~~~~~-------~~-~~~~~s~   63 (287)
T d1pgua2          10 SGHNKGITALTVNP----LISGSYDG---RIMEWSS--SS----MHQDHSN-----LIVSLDN-------SK-AQEYSSI   63 (287)
T ss_dssp             CCCSSCEEEEETTT----TEEEETTS---CEEETTT--TE----EECCCCS-----CEEEEEC-------CS-TTCCEEE
T ss_pred             CCCCCceEEEEECc----EEEEeCCC---eEEEEEC--CC----CCCCCCC-----CEEEEEe-------cC-CCeEEEE
Confidence            35899999999998    89999887   4455543  22    1112221     2245554       43 5568999


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD  295 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd  295 (502)
                      +.|++|++|++...                                  .+...+.+++++++ + .++..+.++.+.+|+
T Consensus        64 s~D~~v~~w~~~~~----------------------------------~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~  107 (287)
T d1pgua2          64 SWDDTLKVNGITKH----------------------------------EFGSQPKVASANND-G-FTAVLTNDDDLLILQ  107 (287)
T ss_dssp             ETTTEEEETTEEEE----------------------------------ECSSCEEEEEECSS-S-EEEEEETTSEEEEEE
T ss_pred             eecccccccccccc----------------------------------ccccceeeeeeccC-C-ceEEEeecccceeee
Confidence            99999999997521                                  12345778888887 4 344455667899999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC-CcEEEEeCCCCCCccc-eEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-RSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      ..+++.+..+..+ ..+.  ++++.+ ..+++++.+ +.+++|++........ ...+...+++++|+|++. +|++|+.
T Consensus       108 ~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~  182 (287)
T d1pgua2         108 SFTGDIIKSVRLN-SPGS--AVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDV  182 (287)
T ss_dssp             TTTCCEEEEEECS-SCEE--EEEECS-SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             ccceeeeeecccc-ceee--eeeccC-cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc-ccccccc
Confidence            9999988888643 3444  455566 566666665 5799999875443221 234667899999999876 8999999


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC---------CCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV---------PNLLATGSTDKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~---------~~~l~t~s~dg~i~vwd~~~~~~~~~~~  444 (502)
                      +|.|++||+.+.        ......+..|..+|.+++|+|.+         ..+|++|+.|++|+|||+.... ..+..
T Consensus       183 dg~i~i~d~~~~--------~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~-~~~~~  253 (287)
T d1pgua2         183 MGKILLYDLQSR--------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKA  253 (287)
T ss_dssp             TSCEEEEETTTT--------EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEE
T ss_pred             cccccceeeccc--------ccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC-eEEEE
Confidence            999999999876        22333457899999999999854         3689999999999999997754 25667


Q ss_pred             ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769          445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT  479 (502)
Q Consensus       445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~  479 (502)
                      +.+|.+.|++++|+|++.  |+++|.||.|++|++
T Consensus       254 ~~~h~~~V~~v~~~~~~~--l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         254 LNAHKDGVNNLLWETPST--LVSSGADACIKRWNV  286 (287)
T ss_dssp             TTSSTTCEEEEEEEETTE--EEEEETTSCEEEEEE
T ss_pred             eCCCCCCeEEEEECCCCE--EEEEECCCeEEEEEE
Confidence            788999999999999874  788999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.4e-27  Score=225.21  Aligned_cols=256  Identities=12%  Similarity=0.140  Sum_probs=189.1

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      .+++|       +|++++||+|+.||+|+|||+.......                        ......+|..+|++++
T Consensus        15 ~~l~f-------sp~~~~L~s~s~Dg~v~iwd~~~~~~~~------------------------~~~~~~~h~~~V~~v~   63 (342)
T d1yfqa_          15 SDIKI-------IPSKSLLLITSWDGSLTVYKFDIQAKNV------------------------DLLQSLRYKHPLLCCN   63 (342)
T ss_dssp             EEEEE-------EGGGTEEEEEETTSEEEEEEEETTTTEE------------------------EEEEEEECSSCEEEEE
T ss_pred             EEEEE-------eCCCCEEEEEECCCeEEEEEccCCCcce------------------------EEEEecCCCCCEEEEE
Confidence            67777       7899999999999999999986432211                        1112236999999999


Q ss_pred             ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeE-EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee-
Q 010769          274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-  351 (502)
Q Consensus       274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-  351 (502)
                      |+|+++.+|++|+.||+|++|++..+........+...+. ...+.+.. ..+++++.++.+++||++........... 
T Consensus        64 f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~  142 (342)
T d1yfqa_          64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             EEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred             EeCCCCCEEEEcccccceeeeeccccccccccccccccccccccccccc-ccccccccccccceeeccccccceeeeccc
Confidence            9998777999999999999999998877776655554443 44444444 88999999999999999865544322221 


Q ss_pred             -----cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCC
Q 010769          352 -----AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       352 -----~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                           ......+.+.+.+. .+++++.+|.|++|+++....      .........+...+.+..+.+..+..+++++.|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  215 (342)
T d1yfqa_         143 NSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCED------DNGTIEESGLKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             CSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTT------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred             ccccccceeeeeeeeccCC-ceeeecCCCcEEEEecccCcc------cceeeeecccccceeeeEeecCCCCEEEeecCC
Confidence                 12234455555444 799999999999999987632      122333445556677777777666899999999


Q ss_pred             CcEEEEECCCCCee-------EE------EEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          427 KMVKLWDLSNNQPS-------CI------ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       427 g~i~vwd~~~~~~~-------~~------~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |.+.+|++......       ..      .....|...|++++|+|++++ ||+|+.||.|+|||+.+++.+....
T Consensus       216 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETTTTEEEEECC
T ss_pred             CeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccE-EEEECCCCEEEEEECCCCcEEEEec
Confidence            99999998654210       11      112356678999999999995 9999999999999999998876543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-26  Score=214.36  Aligned_cols=271  Identities=20%  Similarity=0.371  Sum_probs=202.2

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      +|...|.|+.  +++++||+|+.++   .++||.++....  ...+..|...    .+|+.|         ++++|++|+
T Consensus        13 ~~~~~V~c~~--~d~~~l~sgs~Dg---~i~vWd~~~~~~--~~~l~~H~~~----V~~v~~---------~~~~l~s~s   72 (293)
T d1p22a2          13 ETSKGVYCLQ--YDDQKIVSGLRDN---TIKIWDKNTLEC--KRILTGHTGS----VLCLQY---------DERVIITGS   72 (293)
T ss_dssp             SSCCCEEEEE--CCSSEEEEEESSS---CEEEEESSSCCE--EEEECCCSSC----EEEEEC---------CSSEEEEEE
T ss_pred             CCCCCEEEEE--EcCCEEEEEeCCC---eEEEEECCCCcE--EEEEecCCCC----Eeeeec---------ccceeeccc
Confidence            4667788764  5899999999987   567776654331  1111223222    256654         688999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      .|+.|++|++........                           ...+....  ..+.+. ...++++..++.+++|++
T Consensus        73 ~D~~i~~~~~~~~~~~~~---------------------------~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~  122 (293)
T d1p22a2          73 SDSTVRVWDVNTGEMLNT---------------------------LIHHCEAV--LHLRFN-NGMMVTCSKDRSIAVWDM  122 (293)
T ss_dssp             TTSCEEEEESSSCCEEEE---------------------------ECCCCSCE--EEEECC-TTEEEEEETTSCEEEEEC
T ss_pred             cccccccccccccccccc---------------------------cccccccc--cccccc-ccceeecccccceeEeec
Confidence            999999999975332111                           11122222  233334 348899999999999999


Q ss_pred             CCCe---eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769          297 AAGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE  373 (502)
Q Consensus       297 ~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~  373 (502)
                      ....   ....+..|...|.++.+.+   ..+++++.|+.|++||+++.+.......+...+..+.+++   ..+++++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~  196 (293)
T d1p22a2         123 ASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSS  196 (293)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEET
T ss_pred             cccccccccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEEcccccccccccCCC---CeEEEecC
Confidence            8764   3445677889999888876   4688999999999999999887666666777788888864   37999999


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-------CeeEEEEec
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN-------QPSCIASRN  446 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~-------~~~~~~~~~  446 (502)
                      ||.|++||+++.         ..+....+|...+..+.+  ++ .+|++|+.||.|++||+...       ...++..+.
T Consensus       197 dg~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~--~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  264 (293)
T d1p22a2         197 DNTIRLWDIECG---------ACLRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV  264 (293)
T ss_dssp             TSCEEEEETTTC---------CEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred             CCEEEEEecccc---------eeeeeecccceeeeeccc--cc-eEEEEEcCCCEEEEEECCCCccccccCCceeeEEec
Confidence            999999999986         677888888888876554  44 89999999999999997542       123577788


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD  478 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~llasg~~dg~i~vwd  478 (502)
                      +|.+.|++++|++  . .|++||.||+|+|||
T Consensus       265 ~H~~~V~~v~~d~--~-~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         265 EHSGRVFRLQFDE--F-QIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCSSCCCCEEECS--S-CEEECCSSSEEEEEC
T ss_pred             CCCCCEEEEEEcC--C-EEEEEecCCEEEEeC
Confidence            9999999999954  4 489999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=6.9e-26  Score=217.96  Aligned_cols=291  Identities=10%  Similarity=0.055  Sum_probs=206.8

Q ss_pred             ccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC--
Q 010769          143 EDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP--  219 (502)
Q Consensus       143 ~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg--  219 (502)
                      .+-.||| +|+++|+++. +     +||+|+...+..  ....|    .....++.|       +|+|++|++++.+.  
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g-----~v~v~d~~~~~~--~~~~~----~~~v~~~~~-------spDg~~l~~~~~~~g~   66 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-G-----QAFIQDVSGTYV--LKVPE----PLRIRYVRR-------GGDTKVAFIHGTREGD   66 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-T-----EEEEECTTSSBE--EECSC----CSCEEEEEE-------CSSSEEEEEEEETTEE
T ss_pred             hcccccCCCCCEEEEEEC-C-----eEEEEECCCCcE--EEccC----CCCEEEEEE-------CCCCCEEEEEEcCCCC
Confidence            4467999 8999998864 3     788887765421  11122    233467777       89999998876553  


Q ss_pred             cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769          220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG  299 (502)
Q Consensus       220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~  299 (502)
                      .|++|++..+.                            ...+..|...|.+++|+|+ +++|++++.++.+++|++.++
T Consensus        67 ~v~v~d~~~~~----------------------------~~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          67 FLGIYDYRTGK----------------------------AEKFEENLGNVFAMGVDRN-GKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             EEEEEETTTCC----------------------------EEECCCCCCSEEEEEECTT-SSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEECCCCc----------------------------EEEeeCCCceEEeeeeccc-ccccceecccccccccccccc
Confidence            79999987422                            1234478999999999999 569999999999999999999


Q ss_pred             eeeEEeccCCCCeEEEEEcCCCCcEEEEEE----------CCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEE
Q 010769          300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGS----------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~  369 (502)
                      ++...+..|...+.+++|+|++ ++|+.+.          .++.+++|++.++.... ...+...+..++|+|++. .|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~-~l~  194 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSK-NLY  194 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSC-EEE
T ss_pred             ceeeeeecccccccchhhccce-eeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCC-EEE
Confidence            9999999999999999999999 6666543          34568999998765433 345567788999999876 788


Q ss_pred             EEeCCCeEEEEECCCCCCCCCC----------------------------------CCCCccEEE----------ecCCC
Q 010769          370 VSLEDGTIKGFDIRTAKSDPDS----------------------------------TSQQSSFTL----------HAHDK  405 (502)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~----------------------------------~~~~~~~~~----------~~h~~  405 (502)
                      +++.++.+.+|+..........                                  .....+..+          ..+..
T Consensus       195 ~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (360)
T d1k32a3         195 YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES  274 (360)
T ss_dssp             EEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSS
T ss_pred             EEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCC
Confidence            8899999999987543210000                                  000001111          12222


Q ss_pred             CeeEEEEcCCCC--CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          406 AVCTISYNPLVP--NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       406 ~v~~l~~sp~~~--~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      .+..+.+.+.++  .++++++.++.|++||+.+++.   ..   |.+.|.+++|+|||++ |++++.||.|++||+.+++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~---~~~~v~~~~~SpDG~~-l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV---TE---VKNNLTDLRLSADRKT-VMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             EEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE---EE---EEEEEEEEEECTTSCE-EEEEETTSCEEEEESSCTT
T ss_pred             CceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE---EE---ecCCcCEEEECCCCCE-EEEEECCCeEEEEECCCCC
Confidence            223333332221  2456667788999999998763   22   2345899999999995 8899999999999999988


Q ss_pred             cccccccC
Q 010769          484 GISNRFSK  491 (502)
Q Consensus       484 ~~~~~~~~  491 (502)
                      ....+..+
T Consensus       348 ~~~~~~~d  355 (360)
T d1k32a3         348 DERTVETD  355 (360)
T ss_dssp             SCEECCCC
T ss_pred             cceEEEec
Confidence            87655443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-24  Score=202.11  Aligned_cols=225  Identities=26%  Similarity=0.465  Sum_probs=179.8

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ++++++||+|+.||+|+|||+.+..                           ....+.+|...|++|+|++   ++|++|
T Consensus        22 ~~d~~~l~sgs~Dg~i~vWd~~~~~---------------------------~~~~l~~H~~~V~~v~~~~---~~l~s~   71 (293)
T d1p22a2          22 QYDDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHTGSVLCLQYDE---RVIITG   71 (293)
T ss_dssp             ECCSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCSSCEEEEECCS---SEEEEE
T ss_pred             EEcCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEecCCCCEeeeeccc---ceeecc
Confidence            3479999999999999999997532                           2334568999999999854   489999


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce---EeecCCeEEEEeCC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDP  362 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~v~~~p  362 (502)
                      +.|++|++|++..+........+......  +.+.. ..++++..++.+.+|+..........   ..+...+.++.+.+
T Consensus        72 s~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  148 (293)
T d1p22a2          72 SSDSTVRVWDVNTGEMLNTLIHHCEAVLH--LRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  148 (293)
T ss_dssp             ETTSCEEEEESSSCCEEEEECCCCSCEEE--EECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET
T ss_pred             ccccccccccccccccccccccccccccc--ccccc-cceeecccccceeEeeccccccccccccccccccccccceecc
Confidence            99999999999999887777655444433  33334 57999999999999999876654322   24456677777765


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI  442 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~  442 (502)
                         ..+++++.|+.|++||+++.         .++..+.+|...+..+.+++   .+|++++.||+|++||+++..  .+
T Consensus       149 ---~~~~~~s~d~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~--~~  211 (293)
T d1p22a2         149 ---KYIVSASGDRTIKVWNTSTC---------EFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA--CL  211 (293)
T ss_dssp             ---TEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCC--EE
T ss_pred             ---cccccccCCCceeeecCCCC---------cEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccce--ee
Confidence               36888999999999999986         77888899999999988874   689999999999999999887  56


Q ss_pred             EEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       443 ~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      .....+...+..+  ++++. .|++|+.||.|++||+.+..
T Consensus       212 ~~~~~~~~~v~~~--~~~~~-~l~sg~~dg~i~iwd~~~~~  249 (293)
T d1p22a2         212 RVLEGHEELVRCI--RFDNK-RIVSGAYDGKIKVWDLVAAL  249 (293)
T ss_dssp             EEECCCSSCEEEE--ECCSS-EEEEEETTSCEEEEEHHHHT
T ss_pred             eeecccceeeeec--cccce-EEEEEcCCCEEEEEECCCCc
Confidence            6677787777654  45666 58999999999999986544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=9.2e-24  Score=196.90  Aligned_cols=216  Identities=16%  Similarity=0.201  Sum_probs=163.2

Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v  291 (502)
                      |++|+.||+|++||+...                                ..+|...|.+++|++. . .+++++.|++|
T Consensus        24 l~sgs~Dg~v~~Wd~~~~--------------------------------~~~h~~~V~~~~~~~~-~-~~~s~s~D~~v   69 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSM--------------------------------HQDHSNLIVSLDNSKA-Q-EYSSISWDDTL   69 (287)
T ss_dssp             TEEEETTSCEEETTTTEE--------------------------------ECCCCSCEEEEECCST-T-CCEEEETTTEE
T ss_pred             EEEEeCCCeEEEEECCCC--------------------------------CCCCCCCEEEEEecCC-C-eEEEEeecccc
Confidence            999999999999998631                                1369999999999976 3 68999999999


Q ss_pred             EEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEE
Q 010769          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  371 (502)
                      ++|++...+       +...+.++.+++++ . ++..+.++.+.+|+........ .......+.  ++++++. .++++
T Consensus        70 ~~w~~~~~~-------~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~v~  136 (287)
T d1pgua2          70 KVNGITKHE-------FGSQPKVASANNDG-F-TAVLTNDDDLLILQSFTGDIIK-SVRLNSPGS--AVSLSQN-YVAVG  136 (287)
T ss_dssp             EETTEEEEE-------CSSCEEEEEECSSS-E-EEEEETTSEEEEEETTTCCEEE-EEECSSCEE--EEEECSS-EEEEE
T ss_pred             ccccccccc-------cccceeeeeeccCC-c-eEEEeecccceeeeccceeeee-eccccceee--eeeccCc-ceeee
Confidence            999975422       34457788898887 4 4445667788899988776543 334444444  4455555 56666


Q ss_pred             eCC-CeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC
Q 010769          372 LED-GTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA  449 (502)
Q Consensus       372 ~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~  449 (502)
                      +.+ +.|++|++...         .....+ ..|...+++++|+|++ .+|++|+.||.|++||+.++.. .......|.
T Consensus       137 ~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~h~  205 (287)
T d1pgua2         137 LEEGNTIQVFKLSDL---------EVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREV-KTSRWAFRT  205 (287)
T ss_dssp             ETTTSCEEEEETTEE---------EEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE-EECCSCCCS
T ss_pred             ccccceeeeeecccc---------ceeeeeeeccCCceeEEEeccCc-cccccccccccccceeeccccc-ccccccccc
Confidence            655 57999998764         233333 3577899999999998 8999999999999999998763 233467889


Q ss_pred             CCEEEEEEcCCCC---------cEEEEEeCCCcEEEEECCCCccc
Q 010769          450 GAVFSVAFSEDSP---------FVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       450 ~~v~~~~~spd~~---------~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      .+|.+++|+|.+.         .+|++|+.|++|+||++.+....
T Consensus       206 ~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~  250 (287)
T d1pgua2         206 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI  250 (287)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC
T ss_pred             cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE
Confidence            9999999998542         25999999999999999875443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=2e-23  Score=206.56  Aligned_cols=263  Identities=13%  Similarity=0.054  Sum_probs=181.7

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      ||||++|++++.|+.|++||+.+........                      .....+|...+.+++|+|++..+++++
T Consensus        70 SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~----------------------i~~~~~~~~~~~s~~~spDG~~l~v~~  127 (426)
T d1hzua2          70 SASGRYLLVIGRDARIDMIDLWAKEPTKVAE----------------------IKIGIEARSVESSKFKGYEDRYTIAGA  127 (426)
T ss_dssp             CTTSCEEEEEETTSEEEEEETTSSSCEEEEE----------------------EECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEccCCceeEEEE----------------------EeCCCCCcceEEeeeecCCCCEEEEee
Confidence            9999999999999999999998754322111                      112236778889999999976566777


Q ss_pred             ecCCcEEEEECCCCeeeEEeccCCCCe-----------EEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecC
Q 010769          286 SADKQVKIWDVAAGKCNLTLEHHTDKV-----------QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAA  353 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v-----------~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~  353 (502)
                      ..++++++||..++.++..+..|...+           ..+.+++++..++++....+.+.+++........ ....+..
T Consensus       128 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  207 (426)
T d1hzua2         128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP  207 (426)
T ss_dssp             EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS
T ss_pred             cCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCC
Confidence            789999999999998887776554443           4455555553333333334555555554443322 2345667


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCC---------------------------------------------
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD---------------------------------------------  388 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---------------------------------------------  388 (502)
                      .+..+.|+|++..++++......+.+++..+....                                             
T Consensus       208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~  287 (426)
T d1hzua2         208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN  287 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred             ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc
Confidence            78899999988766666666667777776544310                                             


Q ss_pred             CCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE-------EeCCCcEEEEECCCCCeeEEE-------EecCCCCCEEE
Q 010769          389 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-------GSTDKMVKLWDLSNNQPSCIA-------SRNPKAGAVFS  454 (502)
Q Consensus       389 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t-------~s~dg~i~vwd~~~~~~~~~~-------~~~~~~~~v~~  454 (502)
                      ......+....+.+|...+..++|+|++ .+|++       ++.+++|+|||+.+++.....       .+..+...|.+
T Consensus       288 ~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~  366 (426)
T d1hzua2         288 HPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ  366 (426)
T ss_dssp             CTTTBTSEEEEEECSSSCCCCEECCTTC-SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEE
T ss_pred             cccccceEeEEEecCCCceeEEEcCCCC-ceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEE
Confidence            0000124456677899999999999998 77774       456789999999987643222       12345677999


Q ss_pred             EEEcCCCCcEEEEE----eCCCcEEEEECCCCccccccccC
Q 010769          455 VAFSEDSPFVLAIG----GSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       455 ~~~spd~~~llasg----~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ++|+|||+++++++    +.+|.|+|||..+.+....+-+.
T Consensus       367 ~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~  407 (426)
T d1hzua2         367 PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  407 (426)
T ss_dssp             EEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             EEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence            99999999876664    35788999999999876554443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=1.9e-21  Score=181.61  Aligned_cols=253  Identities=14%  Similarity=0.132  Sum_probs=188.5

Q ss_pred             cccCCCcceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCc
Q 010769          187 IIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH  265 (502)
Q Consensus       187 ~~~~~~~~~~~w~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h  265 (502)
                      ..+...|..+++       +|+|++| ++++.++.|++||+.+...+.                           .+..|
T Consensus        28 i~~g~~p~~va~-------spdG~~l~v~~~~~~~i~v~d~~t~~~~~---------------------------~~~~~   73 (301)
T d1l0qa2          28 IPVGSNPMGAVI-------SPDGTKVYVANAHSNDVSIIDTATNNVIA---------------------------TVPAG   73 (301)
T ss_dssp             EECSSSEEEEEE-------CTTSSEEEEEEGGGTEEEEEETTTTEEEE---------------------------EEECS
T ss_pred             EECCCCceEEEE-------eCCCCEEEEEECCCCEEEEEECCCCceee---------------------------eeecc
Confidence            344455666665       8999987 466788999999997643221                           12233


Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  345 (502)
                       ..+..++|++++..+++++..++.+.+|+..+++....+.. ...+.++.|+|++..+++++..++.+.+|+..+....
T Consensus        74 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  151 (301)
T d1l0qa2          74 -SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (301)
T ss_dssp             -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             -ccccccccccccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeecccccee
Confidence             34688999999777777888889999999999998888874 4567889999999666677778899999999887655


Q ss_pred             cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-
Q 010769          346 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-  424 (502)
Q Consensus       346 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-  424 (502)
                      . .......+.++.++|++..+++++...+.+.+|+....         ....... +...+..++|++++..+++++. 
T Consensus       152 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~  220 (301)
T d1l0qa2         152 N-TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVD  220 (301)
T ss_dssp             E-EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEEE-CSSEEEEEEECTTSSEEEEEEEC
T ss_pred             e-ecccCCCceEEEeeccccceeeecccccccccccccce---------eeeeccc-ccCCcceeecccccccccccccc
Confidence            4 44556678899999988755555556677888887754         3333333 4456788999999844434332 


Q ss_pred             -CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          425 -TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       425 -~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                       .++.|++||+.+++.  +..+.. ...+.+++|+|+|++++++++.++.|++||+.+++.+.++.
T Consensus       221 ~~~~~v~v~D~~t~~~--~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         221 KYFNTVSMIDTGTNKI--TARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             SSCCEEEEEETTTTEE--EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ceeeeeeeeecCCCeE--EEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence             346899999999873  444443 35689999999999877888889999999999999887653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=2.6e-21  Score=191.20  Aligned_cols=300  Identities=10%  Similarity=-0.032  Sum_probs=195.7

Q ss_pred             CCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCC
Q 010769          149 PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDV  228 (502)
Q Consensus       149 p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~  228 (502)
                      +...++++.+.++     +|.+|+....   .+..  .......|..+++       ||||++|++++.|+.|++||+.+
T Consensus        30 ~~~~~~v~~~d~g-----~v~v~D~~t~---~v~~--~~~~g~~~~~v~f-------SpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          30 LENLFSVTLRDAG-----QIALIDGSTY---EIKT--VLDTGYAVHISRL-------SASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             GGGEEEEEETTTT-----EEEEEETTTC---CEEE--EEECSSCEEEEEE-------CTTSCEEEEEETTSEEEEEETTS
T ss_pred             CCcEEEEEEcCCC-----EEEEEECCCC---cEEE--EEeCCCCeeEEEE-------CCCCCEEEEEcCCCCEEEEEeeC
Confidence            3334456666665     6666665544   2221  1112223444444       99999999999999999999976


Q ss_pred             CCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc-
Q 010769          229 IDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-  307 (502)
Q Consensus       229 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-  307 (502)
                      .+....                      .......+|.+.+.+..|+|+|..++++++.+++|+|||..+++++..+.. 
T Consensus        93 ~~~~~~----------------------~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~  150 (432)
T d1qksa2          93 KEPTTV----------------------AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  150 (432)
T ss_dssp             SSCCEE----------------------EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             CCceEE----------------------EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC
Confidence            432211                      111122357788888899999766678999999999999999998877654 


Q ss_pred             ----------CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769          308 ----------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGT  376 (502)
Q Consensus       308 ----------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~  376 (502)
                                +......+.++|++..++++...++.|.+|+....+... ........+..++|+|++..+++++..++.
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~  230 (432)
T d1qksa2         151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK  230 (432)
T ss_dssp             EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred             CccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccce
Confidence                      345667889999996677788888999999998766433 234556678999999998866666677778


Q ss_pred             EEEEECCCCCCCC---------CCC--------CCCccE----------E-E-------ecCCCCeeEEEEcCCCCCEEE
Q 010769          377 IKGFDIRTAKSDP---------DST--------SQQSSF----------T-L-------HAHDKAVCTISYNPLVPNLLA  421 (502)
Q Consensus       377 i~i~d~~~~~~~~---------~~~--------~~~~~~----------~-~-------~~h~~~v~~l~~sp~~~~~l~  421 (502)
                      +.++|..+.....         ...        ...+..          . .       ..|...+....++|++ ..++
T Consensus       231 v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~  309 (432)
T d1qksa2         231 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-GSLF  309 (432)
T ss_dssp             EEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCC
T ss_pred             EEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCC-CeEE
Confidence            9999987653200         000        000000          0 0       0122345556666665 5566


Q ss_pred             EEeCCCcEEEEECCCCCe------------------------eEEE------EecCCCCCEEEEEEcCCCCcEEEEEe--
Q 010769          422 TGSTDKMVKLWDLSNNQP------------------------SCIA------SRNPKAGAVFSVAFSEDSPFVLAIGG--  469 (502)
Q Consensus       422 t~s~dg~i~vwd~~~~~~------------------------~~~~------~~~~~~~~v~~~~~spd~~~llasg~--  469 (502)
                      +++.++..++|......+                        ..+.      .+..|...|.+++|+|||++++++..  
T Consensus       310 ~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~  389 (432)
T d1qksa2         310 IKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG  389 (432)
T ss_dssp             EECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC
T ss_pred             EEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecC
Confidence            666666666665433110                        0010      12245667999999999998666653  


Q ss_pred             --CCCcEEEEECCCCcccccc
Q 010769          470 --SKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       470 --~dg~i~vwd~~~~~~~~~~  488 (502)
                        .+|.|+|||..+.+....+
T Consensus       390 ~~~~g~i~i~D~~T~k~~~~i  410 (432)
T d1qksa2         390 KDQESALVVVDDKTLELKHVI  410 (432)
T ss_dssp             TTSCCEEEEEETTTTEEEEEE
T ss_pred             CCCCCcEEEEECCCceEEeEe
Confidence              4688999999999876544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=4e-21  Score=184.19  Aligned_cols=244  Identities=13%  Similarity=0.098  Sum_probs=169.3

Q ss_pred             CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769          137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      .|...|.++.|+|+|++|++++.++.   -.|++|+...+....+. .|    ...+.++.|       +|+|++|++++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~-~~----~~~v~~~~~-------spdg~~l~~~~  104 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFE-EN----LGNVFAMGV-------DRNGKFAVVAN  104 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECC-CC----CCSEEEEEE-------CTTSSEEEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEee-CC----CceEEeeee-------cccccccceec
Confidence            37788999999999999998876652   13555655444211222 22    222357777       89999999999


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe----------
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS----------  286 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs----------  286 (502)
                      .++.+++|++.....                           ...+..|...+.+++|+|++. +|+.++          
T Consensus       105 ~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~spdg~-~la~~~~~~~~~~~~~  156 (360)
T d1k32a3         105 DRFEIMTVDLETGKP---------------------------TVIERSREAMITDFTISDNSR-FIAYGFPLKHGETDGY  156 (360)
T ss_dssp             TTSEEEEEETTTCCE---------------------------EEEEECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSC
T ss_pred             cccccccccccccce---------------------------eeeeecccccccchhhcccee-eeeeeccccccceeec
Confidence            999999999975332                           223346888899999999954 666443          


Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-------------------
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-------------------  347 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------  347 (502)
                      .++.+++|++.+++..... .|...+.++.|+|+| +.|++++.++.+.+|+.........                   
T Consensus       157 ~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK  234 (360)
T ss_dssp             CEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred             cccceeeeccccCceeeec-ccccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccce
Confidence            3456999999988765544 467889999999999 8899999999999998653221000                   


Q ss_pred             ---------------------eEe---ecCCeEEEEeCC----------CCC--CEEEEEeCCCeEEEEECCCCCCCCCC
Q 010769          348 ---------------------KWA---VAADVESLAWDP----------HAE--HSFVVSLEDGTIKGFDIRTAKSDPDS  391 (502)
Q Consensus       348 ---------------------~~~---~~~~v~~v~~~p----------~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~  391 (502)
                                           ...   ..+....+...+          .+.  .+++.++.++.|++||+.+.      
T Consensus       235 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------  308 (360)
T d1k32a3         235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR------  308 (360)
T ss_dssp             CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC------
T ss_pred             ECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC------
Confidence                                 000   001122222222          111  12344556788999998865      


Q ss_pred             CCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769          392 TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP  439 (502)
Q Consensus       392 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~  439 (502)
                         + .   ..|.+.|.+++|+|+| ++|++++.||.|++||+..+..
T Consensus       309 ---~-~---~~~~~~v~~~~~SpDG-~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         309 ---K-V---TEVKNNLTDLRLSADR-KTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             ---C-E---EEEEEEEEEEEECTTS-CEEEEEETTSCEEEEESSCTTS
T ss_pred             ---e-E---EEecCCcCEEEECCCC-CEEEEEECCCeEEEEECCCCCc
Confidence               2 2   2344569999999998 9999999999999999998773

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.1e-19  Score=172.21  Aligned_cols=278  Identities=15%  Similarity=0.159  Sum_probs=184.3

Q ss_pred             ceEEEEEecCCcceeEEEEEecCCCCCCceeeeecccc---CCCcceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCC
Q 010769          152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIII---PAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLD  227 (502)
Q Consensus       152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~w~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~  227 (502)
                      .++++++.++     +|++|+....   .  ..+...+   ...|.++++       +|+|++| ++++.++.|.+||+.
T Consensus         2 ~~~vt~~~d~-----~v~v~D~~s~---~--~~~~i~~~~~~~~~~~i~~-------spDg~~l~v~~~~~~~v~v~D~~   64 (337)
T d1pbyb_           2 DYILAPARPD-----KLVVIDTEKM---A--VDKVITIADAGPTPMVPMV-------APGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEEETTT-----EEEEEETTTT---E--EEEEEECTTCTTCCCCEEE-------CTTSSEEEEEETTTTEEEEEETT
T ss_pred             eEEEEEcCCC-----EEEEEECCCC---e--EEEEEECCCCCCCccEEEE-------CCCCCEEEEEECCCCeEEEEECC
Confidence            4788888777     6666665543   2  2222222   223455555       8999987 567789999999998


Q ss_pred             CCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe------------cCCcEEEEE
Q 010769          228 VIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS------------ADKQVKIWD  295 (502)
Q Consensus       228 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs------------~Dg~v~vwd  295 (502)
                      +++.+......                      ....+...+..++|+|++. ++++++            .++.+.+||
T Consensus        65 t~~~~~~~~~~----------------------~~~~~~~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d  121 (337)
T d1pbyb_          65 TGETLGRIDLS----------------------TPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYD  121 (337)
T ss_dssp             TCCEEEEEECC----------------------BTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred             CCcEEEEEecC----------------------CCcccccceeeEEEcCCCc-EEEEeecCCcceeeeccccccceeecc
Confidence            75443322110                      1112345577899999954 666554            467899999


Q ss_pred             CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC---------
Q 010769          296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH---------  366 (502)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~---------  366 (502)
                      ..+++....+.. ...+.+++|+|++ .++++++  +.+.+||..+..... ............+.|++..         
T Consensus       122 ~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~--~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (337)
T d1pbyb_         122 AETLSRRKAFEA-PRQITMLAWARDG-SKLYGLG--RDLHVMDPEAGTLVE-DKPIQSWEAETYAQPDVLAVWNQHESSG  196 (337)
T ss_dssp             TTTTEEEEEEEC-CSSCCCEEECTTS-SCEEEES--SSEEEEETTTTEEEE-EECSTTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred             ccCCeEEEeccc-cCCceEEEEcCCC-CEEEEEc--CCcceeeeecCcEEE-EeecCCccccceecCCcceeeccccccc
Confidence            999999888874 5568899999999 7777775  457789987765332 1111111111111111110         


Q ss_pred             --------------EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          367 --------------SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       367 --------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                                    ....+..++.+.+|+..++        ......+..+...+..+.++|++ .+++++  ++.|++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~  265 (337)
T d1pbyb_         197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETG--------EMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESF  265 (337)
T ss_dssp             EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC--------CEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEE
T ss_pred             eeeeeeeeeeeccceeeecccCccEEEEEcCCC--------cEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEEE
Confidence                          1111223456888888876        23344556678888999999987 666655  5789999


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |+.+++.  +.... +...+.+++|+|+|++ |++++.++.|+|||+.+.+.+.++-
T Consensus       266 d~~~~~~--~~~~~-~~~~~~~~~~s~dG~~-l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         266 DLEKNAS--IKRVP-LPHSYYSVNVSTDGST-VWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             ETTTTEE--EEEEE-CSSCCCEEEECTTSCE-EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ECCCCcE--EEEEc-CCCCEEEEEECCCCCE-EEEEeCCCcEEEEECCCCcEEEEEE
Confidence            9999874  33332 3466889999999995 7788999999999999999887653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=1e-19  Score=179.54  Aligned_cols=242  Identities=10%  Similarity=0.013  Sum_probs=170.7

Q ss_pred             CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                      ..++++.+.+|.|+|||+.+.+.+.                           .+..| ..+..++|+|+| .+|++++.|
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~---------------------------~l~~g-~~~~~vafSPDG-k~l~~~~~d   82 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVK---------------------------VIDTG-YAVHISRMSASG-RYLLVIGRD   82 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEE---------------------------EEECC-SSEEEEEECTTS-CEEEEEETT
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEE---------------------------EEeCC-CCeeEEEECCCC-CEEEEEeCC
Confidence            3456778889999999998643322                           22334 468999999995 588999999


Q ss_pred             CcEEEEECCCCeeeEE--e---ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe-----------ec
Q 010769          289 KQVKIWDVAAGKCNLT--L---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-----------VA  352 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~--~---~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----------~~  352 (502)
                      ++|++||+.++++...  +   .+|...+.+++|+|+|..+++++..++.+++||..+.........           ..
T Consensus        83 ~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  162 (426)
T d1hzua2          83 ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE  162 (426)
T ss_dssp             SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred             CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCC
Confidence            9999999998875432  2   356666778888999955566777899999999998765543322           23


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      .....+.+++++..++++....+.+.+++....        .........+...+..+.|+|++..++++...+..+.+|
T Consensus       163 ~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~  234 (426)
T d1hzua2         163 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI--------DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVI  234 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECSSS--------SSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEE
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEeccc--------cceeeEEeccCCccEeeeECCCCcEEEeeeecccceeee
Confidence            445566777776655555556667777776654        233445556788899999999984444444456667777


Q ss_pred             ECCCCCe----------------------------------------------------eEEEEecCCCCCEEEEEEcCC
Q 010769          433 DLSNNQP----------------------------------------------------SCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       433 d~~~~~~----------------------------------------------------~~~~~~~~~~~~v~~~~~spd  460 (502)
                      +..+++.                                                    .....+.+|...+..++|+|+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPd  314 (426)
T d1hzua2         235 DSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK  314 (426)
T ss_dssp             ETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTT
T ss_pred             ecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCC
Confidence            7654321                                                    123345567777899999999


Q ss_pred             CCcEEE-------EEeCCCcEEEEECCCCcccccc
Q 010769          461 SPFVLA-------IGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       461 ~~~lla-------sg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      +++ |+       +++.+++|+|||+.+++.+.+.
T Consensus       315 g~~-l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         315 SSH-LYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             CSE-EEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             Cce-EEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence            996 55       3455789999999998877654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=5.1e-20  Score=175.16  Aligned_cols=289  Identities=11%  Similarity=0.068  Sum_probs=189.1

Q ss_pred             ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEE-EEecCCCcEEE
Q 010769          145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEI  223 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~l-a~g~~dg~I~i  223 (502)
                      ++|++++++|++++.++     .|++|+....   .+...........|.++.|       +|+|+++ ++++.++.|++
T Consensus         2 ~a~~~~~~~l~~~~~~~-----~v~v~D~~t~---~~~~t~~~~~~~~p~~l~~-------spDG~~l~v~~~~~~~v~~   66 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPN-----NLHVVDVASD---TVYKSCVMPDKFGPGTAMM-------APDNRTAYVLNNHYGDIYG   66 (346)
T ss_dssp             CCCCTTCEEEEEEETTT-----EEEEEETTTT---EEEEEEECSSCCSSCEEEE-------CTTSSEEEEEETTTTEEEE
T ss_pred             ccCCCCCcEEEEEcCCC-----EEEEEECCCC---CEEEEEEcCCCCCcceEEE-------CCCCCEEEEEECCCCcEEE
Confidence            57899999999999887     6666666654   4432222222344667777       8999987 55667899999


Q ss_pred             eeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe------------cCCcE
Q 010769          224 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS------------ADKQV  291 (502)
Q Consensus       224 wdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs------------~Dg~v  291 (502)
                      ||+.+.........                     ......+...+..++|+|++. +|++++            .++.+
T Consensus        67 ~d~~t~~~~~~~~~---------------------~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i  124 (346)
T d1jmxb_          67 IDLDTCKNTFHANL---------------------SSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRL  124 (346)
T ss_dssp             EETTTTEEEEEEES---------------------CCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEE
T ss_pred             EeCccCeeeeeecc---------------------cccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceE
Confidence            99986543322111                     011123445677899999965 555543            47789


Q ss_pred             EEEECCCCeeeEEeccC--CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC---
Q 010769          292 KIWDVAAGKCNLTLEHH--TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH---  366 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~---  366 (502)
                      .+|+..+++....+..+  ...+..+.+++++ .++++   ++.+.+|++.+..... ..........+.++|++..   
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  199 (346)
T d1jmxb_         125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLYVA---GPDIYKMDVKTGKYTV-ALPLRNWNRKGYSAPDVLYFWP  199 (346)
T ss_dssp             EEEEGGGGGGBCCSEEEECCSSCCCEEECTTS-CEEEE---SSSEEEECTTTCCEEE-EECSTTCCCTTBCCCBCCCCCC
T ss_pred             EEEecccceeeeEEEeeeccCceEEEEecCCC-EEEEe---CCcceEEEccCCCEEE-EEecCCCccceEEeccccEEEE
Confidence            99999887665444322  3456667777776 55543   3568899987765433 2222233333344443322   


Q ss_pred             ----------------------EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe
Q 010769          367 ----------------------SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       367 ----------------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                                            .+.++...+.+.+|++.+.        .........|...+..+.+++++ .+++.+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  270 (346)
T d1jmxb_         200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG--------KTHTQEFADLTELYFTGLRSPKD-PNQIYGV  270 (346)
T ss_dssp             CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC--------CEEEEEEEECSSCEEEEEECSSC-TTEEEEE
T ss_pred             EecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC--------ceEEEEeecccceeEEEEEeCCC-CEEEEec
Confidence                                  2223334456777887765        23444556788889999999988 4455544


Q ss_pred             CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                       ++.|++||+.+++.  +.... +...+.+++|+|||++ |++++.++.|+|||+.+++.+.++-
T Consensus       271 -~~~v~v~d~~~~~~--~~~~~-~~~~~~~va~s~DG~~-l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         271 -LNRLAKYDLKQRKL--IKAAN-LDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             -ESEEEEEETTTTEE--EEEEE-CSSCCCEEEECSSSSC-EEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             -CCeEEEEECCCCcE--EEEEc-CCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECccCCEEEEEE
Confidence             35799999999874  33333 3346889999999995 7788999999999999999887644

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.82  E-value=7e-18  Score=157.01  Aligned_cols=233  Identities=14%  Similarity=0.115  Sum_probs=174.7

Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV  291 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v  291 (502)
                      .++++.++.|.|||+.+++.+..                           + .....+..++|+|+++.++++++.++.|
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~---------------------------i-~~g~~p~~va~spdG~~l~v~~~~~~~i   56 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTAT---------------------------I-PVGSNPMGAVISPDGTKVYVANAHSNDV   56 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE---------------------------E-ECSSSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEE---------------------------E-ECCCCceEEEEeCCCCEEEEEECCCCEE
Confidence            34567889999999986432221                           1 1224578999999966556788889999


Q ss_pred             EEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEE
Q 010769          292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~  371 (502)
                      ++||+.+++.+.++..+. .+..+.|++++..+++++..++.+.+|+..+..... .........+++|+|++..+++++
T Consensus        57 ~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~~~~~~~  134 (301)
T d1l0qa2          57 SIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG-TVKTGKSPLGLALSPDGKKLYVTN  134 (301)
T ss_dssp             EEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEECSSSEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeee-eccccccceEEEeecCCCeeeeee
Confidence            999999999999998665 468899999996677777788899999998876544 455667789999999988777788


Q ss_pred             eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCeeEEEEecCCCC
Q 010769          372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQPSCIASRNPKAG  450 (502)
Q Consensus       372 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~~~~~~~~~~~~~~~~  450 (502)
                      ..++.+.+|+..+.         .....+. +...+..++++|++ ..+++++ ..+.+.+|+......  ..... ...
T Consensus       135 ~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~  200 (301)
T d1l0qa2         135 NGDKTVSVINTVTK---------AVINTVS-VGRSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSV--IDTVK-VEA  200 (301)
T ss_dssp             TTTTEEEEEETTTT---------EEEEEEE-CCSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEE--EEEEE-CSS
T ss_pred             ccccceeeeecccc---------ceeeecc-cCCCceEEEeeccc-cceeeecccccccccccccceee--eeccc-ccC
Confidence            88999999999876         4444444 44567889999998 5555555 456777888777653  23333 335


Q ss_pred             CEEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCcccccc
Q 010769          451 AVFSVAFSEDSPFVLAIGG--SKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       451 ~v~~~~~spd~~~llasg~--~dg~i~vwd~~~~~~~~~~  488 (502)
                      .+..++|++++.++++++.  .++.|++||+.+++.+.+.
T Consensus       201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             CcceeeccccccccccccccceeeeeeeeecCCCeEEEEE
Confidence            6788999999997555443  3468999999998877654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.2e-17  Score=157.81  Aligned_cols=284  Identities=11%  Similarity=0.157  Sum_probs=183.6

Q ss_pred             EEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe-cCCCcEEEeeCCCCCCCC
Q 010769          155 VCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG-SMEPAIEIWDLDVIDEVQ  233 (502)
Q Consensus       155 ~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g-~~dg~I~iwdl~~~~~~~  233 (502)
                      ++++.++   .++||.++...    .+........+..+.+++|       +|+|++|+++ ..++.|++|++.......
T Consensus         8 v~~~~~~---~I~v~~~~~~~----~l~~~~~~~~~~~v~~la~-------spDG~~L~v~~~~d~~i~~~~i~~~~~~~   73 (333)
T d1ri6a_           8 IASPESQ---QIHVWNLNHEG----ALTLTQVVDVPGQVQPMVV-------SPDKRYLYVGVRPEFRVLAYRIAPDDGAL   73 (333)
T ss_dssp             EEEGGGT---EEEEEEECTTS----CEEEEEEEECSSCCCCEEE-------CTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EECCCCC---cEEEEEEcCCC----CeEEEEEEcCCCCEeEEEE-------eCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence            4444444   56777776443    3333333344555666666       8999998555 458999999997533221


Q ss_pred             ceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe-cCCcEEEEECCCCeeeEE--eccCCC
Q 010769          234 PHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIWDVAAGKCNLT--LEHHTD  310 (502)
Q Consensus       234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs-~Dg~v~vwd~~~~~~~~~--~~~h~~  310 (502)
                      ..                        .....+...+.+++|+|++. +|++++ .+++|.+|+.........  ...+..
T Consensus        74 ~~------------------------~~~~~~~~~p~~l~~spDg~-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  128 (333)
T d1ri6a_          74 TF------------------------AAESALPGSLTHISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD  128 (333)
T ss_dssp             EE------------------------EEEEECSSCCSEEEECTTSS-EEEEEETTTTEEEEEEEETTEEEEEEEEECCCT
T ss_pred             EE------------------------eeecccCCCceEEEEcCCCC-EEeecccCCCceeeeccccccceecccccCCCc
Confidence            11                        01112445678899999955 666665 577899999877654433  345677


Q ss_pred             CeEEEEEcCCCCcEEEEEE-CCCcEEEEeCCCCCCccceE------eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECC
Q 010769          311 KVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR  383 (502)
Q Consensus       311 ~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~------~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~  383 (502)
                      .+.++.++|++ +++++++ .+..|.+|+...........      ........++|++.+...+.+....+...+|+..
T Consensus       129 ~~~~v~~s~d~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~  207 (333)
T d1ri6a_         129 GCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  207 (333)
T ss_dssp             TBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             cceEEEeeecc-eeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeec
Confidence            88899999999 5555554 56679999987655432211      1234567899999887666666677888888876


Q ss_pred             CCCCCCCCCCCCccEEEe------cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCCEEEEE
Q 010769          384 TAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVA  456 (502)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~  456 (502)
                      ......     .......      ........+++++++..+++++..++.+.+|++..... ............+.+++
T Consensus       208 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a  282 (333)
T d1ri6a_         208 DPHGNI-----ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFN  282 (333)
T ss_dssp             CTTSCC-----EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEE
T ss_pred             ccccce-----eeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEE
Confidence            542100     1111111      12345677899999866666777788999999876542 22333333445678899


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEEC--CCCc
Q 010769          457 FSEDSPFVLAIGGSKGKLEIWDT--LSDA  483 (502)
Q Consensus       457 ~spd~~~llasg~~dg~i~vwd~--~~~~  483 (502)
                      |+|||++|++++..++.|++|++  .++.
T Consensus       283 ~spDGk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         283 VDHSGKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             ECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             EeCCCCEEEEEECCCCeEEEEEEECCCCc
Confidence            99999986666666789999955  5554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=7.9e-17  Score=155.10  Aligned_cols=312  Identities=10%  Similarity=-0.002  Sum_probs=195.7

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      +...+..++++|+++.+++..........+||+++....   .+....  .... ...+.|       +|+|++|++++.
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg---~~~~~~--~~~~-~~~~a~-------SpDG~~l~va~~   85 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHV--NGGF-LPNPVA-------AHSGSEFALAST   85 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC---CEEEEE--eCCC-CccEEE-------cCCCCEEEEEee
Confidence            567789999999999998764433333458999987665   333222  1222 224444       899999998753


Q ss_pred             ----------CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE-EEe
Q 010769          218 ----------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA-SAS  286 (502)
Q Consensus       218 ----------dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~-sgs  286 (502)
                                ++.|.|||+.+.+.........                 .....   -......+.|++++..+++ ...
T Consensus        86 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~-----------------~~~~~---~~~~~~~~~~s~dg~~~~v~~~~  145 (373)
T d2madh_          86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPD-----------------APRFD---VGPYSWMNANTPNNADLLFFQFA  145 (373)
T ss_pred             cCCcccccccceEEEEEECCCCcEEEEEecCC-----------------cceeE---eccCCCcEEEEeCCCcEEEEEEc
Confidence                      5789999998755433211100                 00000   0112345788888554332 234


Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee------cCCeEEEEe
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV------AADVESLAW  360 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~v~~  360 (502)
                      .++.+.+|+....+.....    ....++.++|++...+++.+.|+.+.+|+.............      ......+.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (373)
T d2madh_         146 AGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             CCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEE
Confidence            4678999998887665444    346788999999778889999999999999876654432221      112334455


Q ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCCCCCC---CCCCccEEEecCCCCeeEEEEcCCCC---------CEEEEEeCCCc
Q 010769          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS---TSQQSSFTLHAHDKAVCTISYNPLVP---------NLLATGSTDKM  428 (502)
Q Consensus       361 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~sp~~~---------~~l~t~s~dg~  428 (502)
                      .+.  ..++..+.++.+.+|+..........   ..................+++++++.         ..+++...++.
T Consensus       222 ~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  299 (373)
T d2madh_         222 NKS--GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE  299 (373)
T ss_pred             CCC--ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe
Confidence            553  35667778889999998765210000   00000001111112233344555442         34455666788


Q ss_pred             EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcE-EEEEeCCCcEEEEECCCCccccccccC
Q 010769          429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFV-LAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l-lasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      +.+||+.+++.  +..+. +...+.+++|+|||+++ +++++.++.|+|||+.+++.++++-..
T Consensus       300 v~~~d~~t~~~--~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         300 VTSVTGLVGQT--SSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             EEEEECCCCcE--EEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence            99999999873  33333 45678999999999864 578889999999999999998876543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1.1e-17  Score=164.79  Aligned_cols=197  Identities=11%  Similarity=0.021  Sum_probs=156.2

Q ss_pred             cEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce-----EeecCC
Q 010769          280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-----WAVAAD  354 (502)
Q Consensus       280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~  354 (502)
                      .++++.+.+|+|.|||+.+++++..+..| ..+..++|+|+| ++|++++.|++|++||+.+.+.....     ..+.+.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            34689999999999999999999999876 469999999999 88999999999999999887643322     133444


Q ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-----------CCCCeeEEEEcCCCCCEEEEE
Q 010769          355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-----------HDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~l~~sp~~~~~l~t~  423 (502)
                      +.+..|+|+|..+++++..++.|++||..++         .++..+..           +......+.++|++..++++.
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~  181 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETL---------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  181 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTC---------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCccc---------cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence            5566778888866788999999999999886         44444433           345567789999986677888


Q ss_pred             eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ..++.|.+|+..+.+...+..+. +...+..++|+|+|+++++++...+.+.+|+..+++.+...
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~i~-~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         182 KETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             ccCCeEEEEEccCCCcceEEEEc-ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            88999999999887754444443 44568899999999987777777789999999888776543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=4.8e-17  Score=155.35  Aligned_cols=299  Identities=11%  Similarity=0.041  Sum_probs=181.0

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec----
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS----  216 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~----  216 (502)
                      .+.-.+.+|+++.++++........-.||+++....   .+...  ...... ..++|       ||+|++|++.+    
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg---~~~~~--~~~g~~-~~~a~-------SpDg~~l~v~~~~~~   69 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGM--IDGGFL-PNPVV-------ADDGSFIAHASTVFS   69 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEEEE--EEECSS-CEEEE-------CTTSSCEEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCC---cEEEE--EECCCC-CceEE-------cCCCCEEEEEeCCCc
Confidence            344557799999998765433223347889987765   33321  112222 24555       89999888643    


Q ss_pred             ------CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE--ecC
Q 010769          217 ------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA--SAD  288 (502)
Q Consensus       217 ------~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg--s~D  288 (502)
                            .++.|++||+.+............                    ...........++|+|++. .++.+  +.+
T Consensus        70 ~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~  128 (355)
T d2bbkh_          70 RIARGERTDYVEVFDPVTLLPTADIELPDA--------------------PRFLVGTYPWMTSLTPDGK-TLLFYQFSPA  128 (355)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETTC--------------------CCCCBSCCGGGEEECTTSS-EEEEEECSSS
T ss_pred             cccccCCCCEEEEEECCCCCEEEEEecCCc--------------------ceeecCCCCceEEEecCCC-eeEEecCCCC
Confidence                  478999999987554332211100                    0011233456789999955 55554  456


Q ss_pred             CcEEEEECCCCeeeEEeccCCCC-------eEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeC
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDK-------VQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD  361 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~-------v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~  361 (502)
                      ..+.+|+..+++.+..+..+...       ...+.+++++..+++....++.+.+++.......     +...+....+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  203 (355)
T d2bbkh_         129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE-----DEFLINHPAYS  203 (355)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT-----TSCBCSCCEEE
T ss_pred             ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce-----ecceeeecccc
Confidence            78999999999988877644321       2233444444222233333334444443322211     11223445566


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC----------CCCeeEEEEcCCCCCEEEEEeCC-----
Q 010769          362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH----------DKAVCTISYNPLVPNLLATGSTD-----  426 (502)
Q Consensus       362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h----------~~~v~~l~~sp~~~~~l~t~s~d-----  426 (502)
                      +.+. .++.++.++.+++|++.....       ..+.....+          ......+++++++ ..++..+.+     
T Consensus       204 ~~~~-~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~  274 (355)
T d2bbkh_         204 QKAG-RLVWPTYTGKIHQIDLSSGDA-------KFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWR  274 (355)
T ss_dssp             TTTT-EEEEEBTTSEEEEEECTTSSC-------EECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTC
T ss_pred             CCCC-eEEEecCCCeEEEEecCCCcE-------EEEeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCcee
Confidence            6544 678888999999999987632       111111111          1234568889988 555544332     


Q ss_pred             -----CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCCcccccccc
Q 010769          427 -----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       427 -----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~-llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                           ..|.+||+.+++...  .+. +...+.+++|+|||+. ++++++.++.|+|||+.+++.++++-.
T Consensus       275 ~~~~~~~v~v~d~~t~~~~~--~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         275 HKTASRFVVVLDAKTGERLA--KFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             TTSCEEEEEEEETTTCCEEE--EEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             ecCCCCeEEEEeCCCCcEEE--Eec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence                 369999999988433  332 2345889999999975 466777899999999999999887643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.3e-15  Score=143.69  Aligned_cols=265  Identities=11%  Similarity=0.091  Sum_probs=171.9

Q ss_pred             CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769          138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM  217 (502)
Q Consensus       138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~  217 (502)
                      +...+..++|+|+|++|+++...+  ..+.+|.++....   .+...........|.+++|       +|+|++|++++.
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d--~~i~~~~i~~~~~---~~~~~~~~~~~~~p~~l~~-------spDg~~l~v~~~  102 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPE--FRVLAYRIAPDDG---ALTFAAESALPGSLTHIST-------DHQGQFVFVGSY  102 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTT--TEEEEEEECTTTC---CEEEEEEEECSSCCSEEEE-------CTTSSEEEEEET
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCC--CeEEEEEEeCCCC---cEEEeeecccCCCceEEEE-------cCCCCEEeeccc
Confidence            567899999999999997766533  2567777765544   3333333334455666766       899999998875


Q ss_pred             -CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          218 -EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       218 -dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                       ++.|.+|+.......                         .......|...+.++.++|++...+.+...+..|.+|+.
T Consensus       103 ~~~~v~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPV-------------------------GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             TTTEEEEEEEETTEEE-------------------------EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CCCceeeeccccccce-------------------------ecccccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence             678999987542111                         111223466778899999996544444445677999998


Q ss_pred             CCCeeeEE------eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE----------eecCCeEEEEe
Q 010769          297 AAGKCNLT------LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----------AVAADVESLAW  360 (502)
Q Consensus       297 ~~~~~~~~------~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----------~~~~~v~~v~~  360 (502)
                      ........      ..........++|++.+...+.+....+...+|+...........          ........+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            76532221      123445678999999995555555667788888876543322111          11234667889


Q ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE-EeCCCcEEEE--ECCCC
Q 010769          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDKMVKLW--DLSNN  437 (502)
Q Consensus       361 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t-~s~dg~i~vw--d~~~~  437 (502)
                      ++++..+++++...+.+.+|++.....      .........+...+.+++|+|+| ++|++ ++.++.|++|  |..++
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~a~spDG-k~l~va~~~~~~v~v~~id~~tG  310 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSEDGS------VLSKEGFQPTETQPRGFNVDHSG-KYLIAAGQKSHHISVYEIVGEQG  310 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSC------CEEEEEEEECSSSCCCEEECTTS-SEEEEECTTTCEEEEEEEETTTT
T ss_pred             ecccCceeeecccCCeEEEEEEcCCCC------EEEEEEEeCCCCCeeEEEEeCCC-CEEEEEECCCCeEEEEEEECCCC
Confidence            999887777788889999999876521      11222233345667899999999 65555 4557899999  45566


Q ss_pred             CeeEEEEec
Q 010769          438 QPSCIASRN  446 (502)
Q Consensus       438 ~~~~~~~~~  446 (502)
                      +...+..+.
T Consensus       311 ~l~~~~~~~  319 (333)
T d1ri6a_         311 LLHEKGRYA  319 (333)
T ss_dssp             EEEEEEEEE
T ss_pred             cEEEEEecc
Confidence            543443333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=1.4e-15  Score=143.33  Aligned_cols=236  Identities=11%  Similarity=0.035  Sum_probs=160.9

Q ss_pred             CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC
Q 010769          210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK  289 (502)
Q Consensus       210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg  289 (502)
                      +||++++.|+.|+|||+.+......+                         ....+...+.+++|+|+++.++++++.++
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-------------------------~~~~~~~~~~~i~~spDg~~l~v~~~~~~   56 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-------------------------TIADAGPTPMVPMVAPGGRIAYATVNKSE   56 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-------------------------ECTTCTTCCCCEEECTTSSEEEEEETTTT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE-------------------------ECCCCCCCccEEEECCCCCEEEEEECCCC
Confidence            58999999999999999864332211                         12234566889999999665557788899


Q ss_pred             cEEEEECCCCeeeEEeccCCC-----CeEEEEEcCCCCcEEEEEE------------CCCcEEEEeCCCCCCccceEeec
Q 010769          290 QVKIWDVAAGKCNLTLEHHTD-----KVQAVAWNHHSPQILLSGS------------FDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       290 ~v~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      .|.+||+.+++.+..+..+..     .+..++|+|++ .+++++.            .++.+.+||..+..... .....
T Consensus        57 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~  134 (337)
T d1pbyb_          57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK-AFEAP  134 (337)
T ss_dssp             EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE-EEECC
T ss_pred             eEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccCCeEEE-ecccc
Confidence            999999999999888865433     34578999999 6666554            46788899998876544 34556


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC---------------
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP---------------  417 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~---------------  417 (502)
                      ..+..++|+|++. ++++++  +.+.+||..+.         .....+..+... ....++|++.               
T Consensus       135 ~~~~~~~~s~dg~-~l~~~~--~~~~~~d~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  201 (337)
T d1pbyb_         135 RQITMLAWARDGS-KLYGLG--RDLHVMDPEAG---------TLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATP  201 (337)
T ss_dssp             SSCCCEEECTTSS-CEEEES--SSEEEEETTTT---------EEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred             CCceEEEEcCCCC-EEEEEc--CCcceeeeecC---------cEEEEeecCCcc-ccceecCCcceeeccccccceeeee
Confidence            6788999999987 566654  44778998875         333333222111 1111111110               


Q ss_pred             --------CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          418 --------NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       418 --------~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                              ..+..++.++.+.+|++.++... ......+...+..+.++|++.+ ++++  ++.|++||+.+++.+.+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~i~v~d~~~~~~~~~~~  277 (337)
T d1pbyb_         202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNASIKRVP  277 (337)
T ss_dssp             EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEEEEEEE
T ss_pred             eeeeeeccceeeecccCccEEEEEcCCCcEE-EEEecCCCcceEEEEecccceE-EEEc--cccEEEEECCCCcEEEEEc
Confidence                    11122233456899999988743 3344556778899999999985 5443  5789999999999887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.68  E-value=4.6e-15  Score=140.28  Aligned_cols=243  Identities=11%  Similarity=-0.020  Sum_probs=163.1

Q ss_pred             CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769          203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL  282 (502)
Q Consensus       203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  282 (502)
                      ++++++++||++++.++.|.|||+.+.+.+..+                          ...|...+.+++|+|++..++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~--------------------------~~~~~~~p~~l~~spDG~~l~   55 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSC--------------------------VMPDKFGPGTAMMAPDNRTAY   55 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEE--------------------------ECSSCCSSCEEEECTTSSEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEE--------------------------EcCCCCCcceEEECCCCCEEE
Confidence            456899999999999999999999864332211                          113556788999999977666


Q ss_pred             EEEecCCcEEEEECCCCeeeEEeccCC------CCeEEEEEcCCCCcEEEEEE------------CCCcEEEEeCCCCCC
Q 010769          283 ASASADKQVKIWDVAAGKCNLTLEHHT------DKVQAVAWNHHSPQILLSGS------------FDRSVVMKDARISTH  344 (502)
Q Consensus       283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~  344 (502)
                      ++++.++.|++||+.+++.+..+....      ..+..++|+|+| .++++++            .++.+.+|+..++..
T Consensus        56 v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG-~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  134 (346)
T d1jmxb_          56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  134 (346)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             EEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCC-CEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence            788889999999999999888775322      245689999999 5565554            477889999887665


Q ss_pred             ccceEe--ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC------
Q 010769          345 SGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV------  416 (502)
Q Consensus       345 ~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~------  416 (502)
                      ......  ....+..+.+++++.  +++.  ++.+.+|++.+.         ..+..+..+. ....+.++|++      
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~  200 (346)
T d1jmxb_         135 AKPVRTFPMPRQVYLMRAADDGS--LYVA--GPDIYKMDVKTG---------KYTVALPLRN-WNRKGYSAPDVLYFWPH  200 (346)
T ss_dssp             BCCSEEEECCSSCCCEEECTTSC--EEEE--SSSEEEECTTTC---------CEEEEECSTT-CCCTTBCCCBCCCCCCC
T ss_pred             eeEEEeeeccCceEEEEecCCCE--EEEe--CCcceEEEccCC---------CEEEEEecCC-CccceEEeccccEEEEE
Confidence            443332  234566677777543  3333  356888998775         3333333222 12222233322      


Q ss_pred             -------------------CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769          417 -------------------PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW  477 (502)
Q Consensus       417 -------------------~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vw  477 (502)
                                         ...++++...+.+.+|++.++... ......+...+.++.+++++.+ ++.+. .+.|++|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~  277 (346)
T d1jmxb_         201 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH-TQEFADLTELYFTGLRSPKDPN-QIYGV-LNRLAKY  277 (346)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECSSCTT-EEEEE-ESEEEEE
T ss_pred             ecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE-EEEeecccceeEEEEEeCCCCE-EEEec-CCeEEEE
Confidence                               133444555667888999887743 3344456678999999999986 44444 4579999


Q ss_pred             ECCCCccccccc
Q 010769          478 DTLSDAGISNRF  489 (502)
Q Consensus       478 d~~~~~~~~~~~  489 (502)
                      |+.+++.++...
T Consensus       278 d~~~~~~~~~~~  289 (346)
T d1jmxb_         278 DLKQRKLIKAAN  289 (346)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             ECCCCcEEEEEc
Confidence            999998776543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.61  E-value=2.6e-13  Score=129.98  Aligned_cols=268  Identities=10%  Similarity=-0.008  Sum_probs=166.1

Q ss_pred             ccccccCCCceEEEEEecCCcc-----eeEEEEEecCCCCCCceeeeeccccCCCc-ceeeeecCCCCCCCCCCEEEEec
Q 010769          143 EDMTINPNDAVIVCARNEDDVS-----HLEVYILEESDGGDPNLYVHHHIIIPAFP-LCMAWLDCPLKDREKGNFMAVGS  216 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~-----~l~v~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~w~~~~~~~s~~~~~la~g~  216 (502)
                      ..+.|+|+|++|+++.......     .-.|++|+....   .+.  .....+..+ .+....+..+.++++++.+++..
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~---~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~  143 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF---LPI--ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ  143 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCC---cEE--EEEecCCcceeEeccCCCcEEEEeCCCcEEEEE
Confidence            3689999999999986543110     013455554443   111  111111110 11111111223367777666554


Q ss_pred             --CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769          217 --MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW  294 (502)
Q Consensus       217 --~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw  294 (502)
                        .++.+.+|+......                               ..+.....++.++|++...+++.+.|+++.+|
T Consensus       144 ~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~  192 (373)
T d2madh_         144 FAAGPAVGLVVQGGSSD-------------------------------DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKT  192 (373)
T ss_pred             EcCCCceEEeeccCCeE-------------------------------EEEeccceeEEEecCCCcEEEEEcCCCeEEEE
Confidence              346778887753211                               13445577899999988788899999999999


Q ss_pred             ECCCCeeeEEeccC------CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE------------eecCCeE
Q 010769          295 DVAAGKCNLTLEHH------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------------AVAADVE  356 (502)
Q Consensus       295 d~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------~~~~~v~  356 (502)
                      +...+........+      ......+.+.+.+  .++..+.++.+.+|+...........            .......
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (373)
T d2madh_         193 DHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ  270 (373)
T ss_pred             EcCCceeeEEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcce
Confidence            99988776655322      1223444555544  56677788999999987654321110            0112234


Q ss_pred             EEEeCCCCCC---------EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC-EEEEEeCC
Q 010769          357 SLAWDPHAEH---------SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTD  426 (502)
Q Consensus       357 ~v~~~p~~~~---------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~t~s~d  426 (502)
                      .+++++++..         .++....++.+.+||+.++         +.+..+. +...+.+++|+|+|.. ++++++.|
T Consensus       271 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~---------~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d  340 (373)
T d2madh_         271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGT  340 (373)
T ss_pred             eeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC---------cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCC
Confidence            4555555442         3345566778999999886         4555544 6677899999999844 45788999


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      +.|++||+.+++  .+..+..+......+++.++
T Consensus       341 ~~v~v~D~~tg~--~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         341 EVLHIYDAGAGD--QDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CeEEEEECCCCC--EEEEECCCCCCCcEEEEecC
Confidence            999999999998  56677666666666666543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=9.6e-14  Score=133.19  Aligned_cols=309  Identities=11%  Similarity=-0.048  Sum_probs=180.5

Q ss_pred             ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec--
Q 010769          139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS--  216 (502)
Q Consensus       139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~--  216 (502)
                      ......++..|+++.....-.........||+++....   .+.....  ....+ .+.|       +|+|++|++.+  
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~---~~~~~~~--~~~~~-~~a~-------spDg~~i~~~~~~   85 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG---VTLGHSL--GAFLS-LAVA-------GHSGSDFALASTS   85 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTT---EEEEEEE--ECTTC-EEEE-------CTTSSCEEEEEEE
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCC---cEEEEEe--CCCCC-cceE-------CCCCCEEEEEccc
Confidence            34556667788888654432222223568999998776   4443221  22222 3455       89999998754  


Q ss_pred             --------CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769          217 --------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD  288 (502)
Q Consensus       217 --------~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D  288 (502)
                              .++.|++||..+............                    ...........++|+|+++.++++...+
T Consensus        86 ~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~--------------------~~~~~g~~p~~~a~SpDGk~l~va~~~~  145 (368)
T d1mdah_          86 FARSAKGKRTDYVEVFDPVTFLPIADIELPDA--------------------PRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             ETTTTSSSEEEEEEEECTTTCCEEEEEEETTS--------------------CSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             CccccccccCCeEEEEECCCCcEeeeecCCcc--------------------ceecccCCccceEECCCCCEEEEEeCCC
Confidence                    467899999986544332111000                    0001122335689999976555554568


Q ss_pred             CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE------eecCCeEEEEeCC
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------AVAADVESLAWDP  362 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~v~~~p  362 (502)
                      +.|.+||+.+++.+..+..+....    +.+.+...+++.+.||.+.++++..........      .+...+..+.+.+
T Consensus       146 ~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (368)
T d1mdah_         146 SAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY  221 (368)
T ss_dssp             SCEEEEEETTTEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred             CeEEEEECCCCcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc
Confidence            999999999999988886554432    223334667778888888888876554332111      1223344566666


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCCCCC-CCCccE--EEecCCCCeeEEEEcCCCCCEEEEEeCC--------CcEEE
Q 010769          363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDST-SQQSSF--TLHAHDKAVCTISYNPLVPNLLATGSTD--------KMVKL  431 (502)
Q Consensus       363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~--~~~~h~~~v~~l~~sp~~~~~l~t~s~d--------g~i~v  431 (502)
                      ++.   +.....+.++++++.......... ......  ...........++++|++..++++...+        ..|.+
T Consensus       222 ~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v  298 (368)
T d1mdah_         222 PGM---LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             TTE---EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             CcE---EEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEE
Confidence            532   222334556666665432100000 000000  0000112234578888874444433222        35899


Q ss_pred             EECCCCCeeEEEEecCCCCCEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCCcccccccc
Q 010769          432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRFS  490 (502)
Q Consensus       432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~-llasg~~dg~i~vwd~~~~~~~~~~~~  490 (502)
                      ||..+++.  +..+. +...+.+++|+|||+. +++++..++.|+|||+.+++.++++-.
T Consensus       299 ~D~~t~~~--~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         299 VTASVGQT--SGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EESSSCCE--EECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EECCCCcE--eEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            99999873  33333 2356889999999964 567778889999999999998877643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=9.2e-13  Score=124.97  Aligned_cols=272  Identities=10%  Similarity=0.019  Sum_probs=153.9

Q ss_pred             ccccccccCCCceEEEEEecCCcc-----eeEEEEEecCCCCCCceeeee------ccccCCCcceeeeecCCCCCCCCC
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVS-----HLEVYILEESDGGDPNLYVHH------HIIIPAFPLCMAWLDCPLKDREKG  209 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~-----~l~v~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~w~~~~~~~s~~~  209 (502)
                      ....++|+|+|++|++++......     .-.|++|+....   .+....      .......|..+.       |++++
T Consensus        48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~---~~~~~~~~~~~~~~~~~~~~~~~~-------~s~dg  117 (355)
T d2bbkh_          48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL---LPTADIELPDAPRFLVGTYPWMTS-------LTPDG  117 (355)
T ss_dssp             SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---CEEEEEEETTCCCCCBSCCGGGEE-------ECTTS
T ss_pred             CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC---CEEEEEecCCcceeecCCCCceEE-------EecCC
Confidence            344689999999998765321000     014666665544   221111      111112233333       38999


Q ss_pred             CEEEEec--CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769          210 NFMAVGS--MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA  287 (502)
Q Consensus       210 ~~la~g~--~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~  287 (502)
                      +++++++  .+..+.+|+.............+                 .   ....-......+.+++++..+++....
T Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~---~~~~~~~~~~~~~~~~dg~~~~v~~~~  177 (355)
T d2bbkh_         118 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----------------C---YHIFPTAPDTFFMHCRDGSLAKVAFGT  177 (355)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----------------E---EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             CeeEEecCCCCceeeeeecCCCcEeeEEecCC-----------------c---ceEeecCCcceEEEcCCCCEEEEEecC
Confidence            9887764  45688999987543222111000                 0   000001222334455554333333333


Q ss_pred             CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE------------eecCCe
Q 010769          288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------------AVAADV  355 (502)
Q Consensus       288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------~~~~~v  355 (502)
                      ++.+.+++.....     ..+...+....+.+.+ ..++.++.++.+++|++..........            ......
T Consensus       178 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  251 (355)
T d2bbkh_         178 EGTPEITHTEVFH-----PEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW  251 (355)
T ss_dssp             SSCCEEEECCCCS-----CTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred             CCeEEEEeccccc-----ceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccce
Confidence            4444444433322     1234445566777777 678888999999999998765432111            112234


Q ss_pred             EEEEeCCCCCCEEEEEeCC---------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC-EEEEEeC
Q 010769          356 ESLAWDPHAEHSFVVSLED---------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGST  425 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~t~s~  425 (502)
                      ..+++++++..+++.....         ..|.+||..+.         +.+..+. +...+.+++|+|+|.. ++++++.
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~---------~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~  321 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------ERLAKFE-MGHEIDSINVSQDEKPLLYALSTG  321 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEE-EEEEECEEEECCSSSCEEEEEETT
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC---------cEEEEec-CCCCEEEEEEcCCCCeEEEEEECC
Confidence            5688888877444443322         36999999986         5555554 3455889999999854 4567778


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      |+.|++||+.+++  .+.++..+......+.+.++
T Consensus       322 d~~i~v~D~~tg~--~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         322 DKTLYIHDAESGE--ELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             TTEEEEEETTTCC--EEEEECCCCSSCCEEECCCC
T ss_pred             CCEEEEEECCCCC--EEEEEeCcCCCccEEEeCCC
Confidence            9999999999998  45566555444444554443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=1.5e-11  Score=121.66  Aligned_cols=144  Identities=10%  Similarity=0.098  Sum_probs=90.4

Q ss_pred             ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccc-cCCCcceeeeecCCCCCCCCCCEEEEecC----
Q 010769          143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAVGSM----  217 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~~s~~~~~la~g~~----  217 (502)
                      ..+.|.+++.++..  .++     .+++++...+....+...+... ...-..+..|       ||||++||.++.    
T Consensus        20 ~~~~W~~d~~~~~~--~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~-------SpDg~~i~~~~~~~~~   85 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QEN-----NILVFNAEYGNSSVFLENSTFDEFGHSINDYSI-------SPDGQFILLEYNYVKQ   85 (470)
T ss_dssp             CCCEECSSSEEEEE--SSS-----CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEE-------CTTSSEEEEEEEEEEC
T ss_pred             cCCEeCCCCEEEEE--cCC-----cEEEEECCCCCEEEEEchhhhhhccCccceeEE-------CCCCCEEEEEECCcce
Confidence            35788899987753  233     4556665554222222222111 1111234444       899999998753    


Q ss_pred             -----CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEE
Q 010769          218 -----EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVK  292 (502)
Q Consensus       218 -----dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~  292 (502)
                           .+.+.|||+.+..                            ...+..|...+..+.|+|+| +.||.. .++.+.
T Consensus        86 ~r~s~~~~~~l~d~~~~~----------------------------~~~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~  135 (470)
T d2bgra1          86 WRHSYTASYDIYDLNKRQ----------------------------LITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIY  135 (470)
T ss_dssp             SSSCEEEEEEEEETTTTE----------------------------ECCSSCCCTTEEEEEECSST-TCEEEE-ETTEEE
T ss_pred             eeeccCceEEEEECCCCc----------------------------ccccccCCccccccccccCc-ceeeEe-ecccce
Confidence                 4678899987532                            12344678889999999995 567664 567899


Q ss_pred             EEECCCCeeeEEecc------------------CCCCeEEEEEcCCCCcEEEEEECC
Q 010769          293 IWDVAAGKCNLTLEH------------------HTDKVQAVAWNHHSPQILLSGSFD  331 (502)
Q Consensus       293 vwd~~~~~~~~~~~~------------------h~~~v~~l~~~~~~~~~l~s~~~d  331 (502)
                      +|++.+++..+....                  +.+....+.|+|+| +.|+....|
T Consensus       136 ~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d  191 (470)
T d2bgra1         136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFN  191 (470)
T ss_dssp             EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEE
T ss_pred             EEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCC-CccceeEec
Confidence            999998876554322                  12334568899999 667666543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.37  E-value=1.6e-11  Score=117.71  Aligned_cols=254  Identities=7%  Similarity=0.017  Sum_probs=160.6

Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchh------hhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +++|+.+|.|+||++.++..+..+.++......      ..+.....   .........|.-.+......|+|+.++++.
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~---~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d   90 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGG---DQQYLNGDCHHPHISMTDGRYDGKYLFIND   90 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCS---SSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEec---ccccccCcccCCCcceecccCCCCEEEEEc
Confidence            678889999999999887766555444321110      00000000   001111233545666777789977666777


Q ss_pred             ecCCcEEEEECCCCeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcE------------------EEEeCCCCCCcc
Q 010769          286 SADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSV------------------VMKDARISTHSG  346 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i------------------~vwd~~~~~~~~  346 (502)
                      ..+++|.++|+.++++...+. .+...+..++|+|++....+++.....+                  ..+|..+.....
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            789999999999999887664 3567899999999984434444333333                  446766654433


Q ss_pred             ceEeecCCeEEEEeCCCCCCEEEEEeCCC----------------------------------------eEEEEECCCCC
Q 010769          347 FKWAVAADVESLAWDPHAEHSFVVSLEDG----------------------------------------TIKGFDIRTAK  386 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg----------------------------------------~i~i~d~~~~~  386 (502)
                       .....+.+..+.|+|++...++++....                                        .+.+++...  
T Consensus       171 -qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~--  247 (441)
T d1qnia2         171 -QVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE--  247 (441)
T ss_dssp             -EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS--
T ss_pred             -EEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC--
Confidence             4455677889999999885554443321                                        222222221  


Q ss_pred             CCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC---------eeEEEEecCCCCCEEEEEE
Q 010769          387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ---------PSCIASRNPKAGAVFSVAF  457 (502)
Q Consensus       387 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~---------~~~~~~~~~~~~~v~~~~~  457 (502)
                             ...+..+..+.. ...+.++|+|..+++++..+++|.|||+.+..         ..++.......-.....+|
T Consensus       248 -------~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f  319 (441)
T d1qnia2         248 -------SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF  319 (441)
T ss_dssp             -------CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred             -------CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence                   244555665544 57899999995566778889999999986521         0112221112223456789


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECC
Q 010769          458 SEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       458 spd~~~llasg~~dg~i~vwd~~  480 (502)
                      +++|. .+.+.+.|..|..|++.
T Consensus       320 d~~g~-~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         320 DGRGN-AYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CSSSE-EEEEETTTTEEEEEEHH
T ss_pred             cCCce-EEEcccccceEEEeccc
Confidence            99996 68899999999999984

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.20  E-value=4.1e-10  Score=107.28  Aligned_cols=251  Identities=10%  Similarity=-0.031  Sum_probs=145.2

Q ss_pred             ccccccCCCceEEEEEecCCc-----ceeEEEEEecCCCCCCc-eeeee--ccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769          143 EDMTINPNDAVIVCARNEDDV-----SHLEVYILEESDGGDPN-LYVHH--HIIIPAFPLCMAWLDCPLKDREKGNFMAV  214 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~-----~~l~v~~~~~~~~~~~~-l~~~~--~~~~~~~~~~~~w~~~~~~~s~~~~~la~  214 (502)
                      ..+.|+|+|+.|++++.....     ..-.|++|+........ +-.+.  .......|..+.|       +|+|++|++
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~-------SpDGk~l~v  140 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN-------CASSACLLF  140 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE-------CTTSSCEEE
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE-------CCCCCEEEE
Confidence            358899999999987642110     11257777765441100 00110  0111222344444       899999988


Q ss_pred             ec-CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769          215 GS-MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI  293 (502)
Q Consensus       215 g~-~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v  293 (502)
                      +. .++.|.+||+.+.......                           ..+..    ..+.+.+...+++.+.||++.+
T Consensus       141 a~~~~~~v~~~d~~~~~~~~~~---------------------------~~~~~----~~~~~~~~~~~v~~~~Dg~~~~  189 (368)
T d1mdah_         141 FLFGSSAAAGLSVPGASDDQLT---------------------------KSASC----FHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             EECSSSCEEEEEETTTEEEEEE---------------------------ECSSC----CCCEEEETTEEECCCCTTSCEE
T ss_pred             EeCCCCeEEEEECCCCcEeEEe---------------------------eccCc----ceEccCCCceEEEEcCCCCEEE
Confidence            86 4689999999764322211                           11111    1123333456777788888888


Q ss_pred             EECCCCeeeEE------eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce------------EeecCCe
Q 010769          294 WDVAAGKCNLT------LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK------------WAVAADV  355 (502)
Q Consensus       294 wd~~~~~~~~~------~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------~~~~~~v  355 (502)
                      |++........      +..+...+..+.+.+++ ..+.+  ..+.+.++++.........            .......
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  266 (368)
T d1mdah_         190 SDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG-MLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF  266 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT-EEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred             EEecCCceeeeeeecccccccccceeecccccCc-EEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCc
Confidence            88765533222      23344555667777776 44433  3455666666544322100            0112234


Q ss_pred             EEEEeCCCCCCEEEEEeCC--------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC-EEEEEeCC
Q 010769          356 ESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTD  426 (502)
Q Consensus       356 ~~v~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~t~s~d  426 (502)
                      ..++++|++..++++...+        ..|.+||..++         +.+..+. +...+.+++|+|++.. +++++..+
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~---------~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~  336 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---------QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---------CEEECCE-EEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC---------cEeEEec-CCCceeEEEECCCCCEEEEEEeCCC
Confidence            4577888877544443322        35889999887         4444444 3456889999999854 45677789


Q ss_pred             CcEEEEECCCCCeeEEEEec
Q 010769          427 KMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~  446 (502)
                      +.|++||..+++.  +..+.
T Consensus       337 ~~v~v~D~~tgk~--~~~i~  354 (368)
T d1mdah_         337 EVLDIYDAASDQD--QSSVE  354 (368)
T ss_dssp             TEEEEEESSSCEE--EEECC
T ss_pred             CeEEEEECCCCCE--EEEEE
Confidence            9999999999983  44444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.20  E-value=6.8e-09  Score=98.50  Aligned_cols=271  Identities=10%  Similarity=0.037  Sum_probs=145.8

Q ss_pred             cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCE--EEEec-
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF--MAVGS-  216 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~--la~g~-  216 (502)
                      ..+.-|+|+|++++|.++...    .+..|.++...    .+...........|..       +.++++++.  +++.. 
T Consensus        40 ~~~s~la~s~d~~~ly~~~~~----~~~~~~i~~~~----~~~~~~~~~~~~~p~~-------v~~~~~~~~~~v~~a~~  104 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAMK----KWSSFAVKSPT----EIVHEASHPIGGHPRA-------NDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT----EEEEEEEEETT----EEEEEEEEECCSSGGG-------GCTTSCCEEEEEEECSS
T ss_pred             CCCCEEEEcCCCCEEEEEeCC----cEEEEEEeCCC----CeEEEeeecCCCCcEE-------EEECCCCCEEEEEEecC
Confidence            345669999999999887543    35666666543    2222221223333433       333788874  44443 


Q ss_pred             CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769          217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV  296 (502)
Q Consensus       217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~  296 (502)
                      ..+.|..+.+...........+.....          ...............+.++.|+|+++.++++......|.+|+.
T Consensus       105 ~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~  174 (365)
T d1jofa_         105 PPYAVYANPFYKFAGYGNVFSVSETGK----------LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK  174 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCC----------EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEeEccCCCCcceeEeeeecce----------ecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEc
Confidence            246666665533221111111100000          0000000011122347899999996544444444567888876


Q ss_pred             CCC-ee--eEEe--ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe-------------------ec
Q 010769          297 AAG-KC--NLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-------------------VA  352 (502)
Q Consensus       297 ~~~-~~--~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------------------~~  352 (502)
                      ... ..  ...+  .........+.|+|++..+.++...+++|.+|++...........                   ..
T Consensus       175 ~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (365)
T d1jofa_         175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL  254 (365)
T ss_dssp             CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred             cCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccccccccccccc
Confidence            543 22  1122  223467899999999955556666789999999876543321111                   11


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCC-----CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC-CCCCEE-EEEeC
Q 010769          353 ADVESLAWDPHAEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP-LVPNLL-ATGST  425 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~~l-~t~s~  425 (502)
                      .....+.++|++..++++...+     +.|..|.+........   ...+...........+++++| +| ++| ++...
T Consensus       255 ~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~---~~~~~~~~~~G~~p~~i~~~p~~G-~~l~va~~~  330 (365)
T d1jofa_         255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK---QLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQ  330 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE---EEEEEECSSCCTTCCCEEECTTCT-TEEEEECSS
T ss_pred             CCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceee---EeEeeEEEcCCCCccEEEecCCCC-CEEEEEeCC
Confidence            1245788999987444443322     2377777765410000   001111112334567899998 56 655 45567


Q ss_pred             CCcEEEEECCCCCe
Q 010769          426 DKMVKLWDLSNNQP  439 (502)
Q Consensus       426 dg~i~vwd~~~~~~  439 (502)
                      ++.|.+|++.....
T Consensus       331 s~~v~v~~~~~~~l  344 (365)
T d1jofa_         331 EGWLEIYRWKDEFL  344 (365)
T ss_dssp             SCEEEEEEEETTEE
T ss_pred             CCeEEEEEEeCCcC
Confidence            89999998866543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.17  E-value=9.1e-09  Score=97.62  Aligned_cols=166  Identities=11%  Similarity=0.099  Sum_probs=106.2

Q ss_pred             CCCeEEEEEcCCCCcEEEEEE-CCCcEEEEeCCCCCCccceE-----eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEEC
Q 010769          309 TDKVQAVAWNHHSPQILLSGS-FDRSVVMKDARISTHSGFKW-----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  382 (502)
Q Consensus       309 ~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~  382 (502)
                      ...+.++.|+|+| ++++++. ....|.+|+...........     ........++|+|+++.++++.-.++.|.+|++
T Consensus       144 ~~h~h~v~~sPdG-~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         144 NTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCcceEEEECCCC-CEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            3457899999999 5555554 45678888766543322111     124568899999998866677778899999998


Q ss_pred             CCCCCCCCCCCCCccEEEe-----------------cCCCCeeEEEEcCCCCCEEEEEeC-CC-----cEEEEECCCCCe
Q 010769          383 RTAKSDPDSTSQQSSFTLH-----------------AHDKAVCTISYNPLVPNLLATGST-DK-----MVKLWDLSNNQP  439 (502)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~-----------------~h~~~v~~l~~sp~~~~~l~t~s~-dg-----~i~vwd~~~~~~  439 (502)
                      .....       ..+....                 .+......+.++|+| ++|+++.. +.     .|..|++.....
T Consensus       223 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~  294 (365)
T d1jofa_         223 DPATH-------MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             CTTTC-------CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             cCCCc-------eEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCc
Confidence            76521       1111111                 112235678999999 66665532 22     377777765321


Q ss_pred             e----EEEEecCCCCCEEEEEEcC-CCCcEEEEEeCCCcEEEEECCCCc
Q 010769          440 S----CIASRNPKAGAVFSVAFSE-DSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       440 ~----~~~~~~~~~~~v~~~~~sp-d~~~llasg~~dg~i~vwd~~~~~  483 (502)
                      .    .+............++++| +|++|+++...++.|.+|++....
T Consensus       295 ~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             eeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            1    1222223334567799998 789877777788999999986543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.14  E-value=4.9e-11  Score=114.33  Aligned_cols=245  Identities=11%  Similarity=0.097  Sum_probs=152.7

Q ss_pred             CCCCCEEEEe-cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          206 REKGNFMAVG-SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       206 s~~~~~la~g-~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                      +|||++|.+. ..++.|.++|+++++.....                          ...+...+..++|+|++....++
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii--------------------------~iP~g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMKTDKIT--------------------------HIPNVQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEE--------------------------ECTTCCCEEEEEECCSSBCCEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCcEeeEE--------------------------ecCCCCCccceEEeccCCEEEEE
Confidence            6899988655 57789999999865432211                          11355678999999986543344


Q ss_pred             EecCCcE------------------EEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--------------
Q 010769          285 ASADKQV------------------KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--------------  332 (502)
Q Consensus       285 gs~Dg~v------------------~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--------------  332 (502)
                      +.....+                  ..+|..+.+...++.. ......+.|+|+| .++++++.+.              
T Consensus       134 ~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~  211 (441)
T d1qnia2         134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDR  211 (441)
T ss_dssp             EEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSB
T ss_pred             eccCCcccccCcccccccccccceEEeecCccceeeEEEec-CCCccceEECCCC-CEEEEEecCCCceEEEeccCcceE
Confidence            4333333                  5588888887777754 3457889999999 6666555432              


Q ss_pred             ---------------------------cEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCC
Q 010769          333 ---------------------------SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA  385 (502)
Q Consensus       333 ---------------------------~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~  385 (502)
                                                 .+.+++....... ...........+.++|+|.++++++..+++|.+||+.+.
T Consensus       212 d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~-~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         212 DWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT-RYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             CEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE-EEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             EEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE-EEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence                                       2233332222222 233445556789999999977788899999999998764


Q ss_pred             CCCCCCCCCCccEEEecC---CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC-------CCee-EEEEe-----cCCC
Q 010769          386 KSDPDSTSQQSSFTLHAH---DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN-------NQPS-CIASR-----NPKA  449 (502)
Q Consensus       386 ~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~-------~~~~-~~~~~-----~~~~  449 (502)
                      ....... ......+.++   .-.....+|.+.| +.+.+...|++|..|++..       .+.. .+...     .+|.
T Consensus       291 ~~~~~~~-~~~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~  368 (441)
T d1qnia2         291 DDLFEDK-IELRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN  368 (441)
T ss_dssp             HHHTTTS-SCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEE
T ss_pred             hhHhhcc-CCcceEEEeecccccCcccceecCCc-eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCC
Confidence            2100000 0111112222   2234556899987 7788888999999999742       1111 12222     3565


Q ss_pred             CCEEEEEEcCCCCcEEEEE---eCCC----------cEEEEECCCC
Q 010769          450 GAVFSVAFSEDSPFVLAIG---GSKG----------KLEIWDTLSD  482 (502)
Q Consensus       450 ~~v~~~~~spd~~~llasg---~~dg----------~i~vwd~~~~  482 (502)
                      ..+.+.+++|||+| |+++   +.|.          +-.+.|++..
T Consensus       369 ~~~~~~t~~pdGk~-l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~  413 (441)
T d1qnia2         369 HASLTESRDADGKW-LVVLSKFSKDRFLPVGPLHPENDQLIDISGE  413 (441)
T ss_dssp             EETTTTSTTCCCCE-EEEEESCCGGGSCCCSSSCCEEEEEEECSSS
T ss_pred             ccccccccCCCCcE-EEecCccccccCcCCCCCCCccceeEEecCC
Confidence            56667789999997 7777   3343          3577888643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=6.2e-08  Score=87.18  Aligned_cols=243  Identities=12%  Similarity=0.047  Sum_probs=142.0

Q ss_pred             ceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-C--cEEEeeCCCCCCCCceeeeCC
Q 010769          164 SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-P--AIEIWDLDVIDEVQPHVILGG  240 (502)
Q Consensus       164 ~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d-g--~I~iwdl~~~~~~~~~~~l~~  240 (502)
                      ...+||+.+........+..+...     ...-+|       ||||+.||..... +  .+.+.+.....          
T Consensus        17 ~~~~l~i~d~dG~~~~~l~~~~~~-----~~sP~w-------SPDGk~IAf~~~~~~~~~~~~~~~~~~~----------   74 (269)
T d2hqsa1          17 FPYELRVSDYDGYNQFVVHRSPQP-----LMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGA----------   74 (269)
T ss_dssp             CCEEEEEEETTSCSCEEEEEESSC-----EEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTTCC----------
T ss_pred             ceEEEEEEcCCCCCcEEEecCCCc-----eeeeEE-------CCCCCEEEEEEeeccCcceeeeecccCc----------
Confidence            345788887655422233222211     123345       9999999976543 2  34444443211          


Q ss_pred             cchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC--CCCeeeEEeccCCCCeEEEEEc
Q 010769          241 IDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV--AAGKCNLTLEHHTDKVQAVAWN  318 (502)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~--~~~~~~~~~~~h~~~v~~l~~~  318 (502)
                                        ...+..+........|+|++..+++.....+...++..  ...... .............++
T Consensus        75 ------------------~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  135 (269)
T d2hqsa1          75 ------------------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWF  135 (269)
T ss_dssp             ------------------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEEC
T ss_pred             ------------------eeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccc
Confidence                              11222466778899999997655555544544333332  222222 223344455566778


Q ss_pred             CCCCcEEEEEECCCcEEE--EeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCc
Q 010769          319 HHSPQILLSGSFDRSVVM--KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS  396 (502)
Q Consensus       319 ~~~~~~l~s~~~dg~i~v--wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  396 (502)
                      +.+...+++...+|...+  .++....... ............|+|++..++++....+...+|-....         ..
T Consensus       136 ~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~---------~~  205 (269)
T d2hqsa1         136 PDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA---------TG  205 (269)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT---------TC
T ss_pred             cccccceecccccCCceEeeeeccccccee-eecccccccccccccccceeEEEeecCCceeeeEeecc---------cc
Confidence            877566666666665444  4444433222 22334556778899998877777777776666655543         22


Q ss_pred             cEEEecCCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769          397 SFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED  460 (502)
Q Consensus       397 ~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd  460 (502)
                      ......+........|+|+|..++.+...  ...|+++++..+.   ...+....+.+...+|+|-
T Consensus       206 ~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~---~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         206 GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC---EEECCCSSSEEEEEEECCC
T ss_pred             cceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEEeCCCCcEEeEEeCCC
Confidence            23444566677888999999444444433  3458899998776   3345555677888999983

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=2.2e-08  Score=90.01  Aligned_cols=195  Identities=12%  Similarity=0.139  Sum_probs=130.6

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  347 (502)
                      ....|++.++ ++++++....+.+++++..+...+..+.. .....++++.+++ +++++-.....+..++.........
T Consensus        58 ~p~gvav~~~-g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~~~  134 (260)
T d1rwia_          58 QPQGLAVDGA-GTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVL  134 (260)
T ss_dssp             SCCCEEECTT-CCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCEEC
T ss_pred             CceEEEEcCC-CCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccc-eeEeeccccccccccccccceeeee
Confidence            4578899998 55777777777777776555554443332 3567899999988 7777766677777777655433221


Q ss_pred             eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEEEEEeCC
Q 010769          348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTD  426 (502)
Q Consensus       348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~d  426 (502)
                      ..........+++++++. ++++...++.|..++....          ....+ ...-.....|++.+++ +++++....
T Consensus       135 ~~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~----------~~~~~~~~~~~~p~gi~~d~~g-~l~vsd~~~  202 (260)
T d1rwia_         135 PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESN----------NQVVLPFTDITAPWGIAVDEAG-TVYVTEHNT  202 (260)
T ss_dssp             CCCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTC----------CEEECCCSSCCSEEEEEECTTC-CEEEEETTT
T ss_pred             eecccCCcceeeecCCCC-Eeeeccccccccccccccc----------eeeeeeccccCCCccceeeeee-eeeeeecCC
Confidence            112234567899999765 7778788889999987754          12222 2344567889999987 888888888


Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      +.|..++...... .+ ...........|+++++|. ++++-..+++|+.++..
T Consensus       203 ~~i~~~~~~~~~~-~~-~~~~~~~~P~~i~~d~~g~-l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         203 NQVVKLLAGSTTS-TV-LPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TEEEEECTTCSCC-EE-CCCCSCCCEEEEEECTTCC-EEEEEGGGTEEEEECCC
T ss_pred             CEEEEEeCCCCeE-EE-EccCCCCCeEEEEEeCCCC-EEEEECCCCEEEEEeCC
Confidence            8888887765432 22 2222335678999999997 67766666666655543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=4.5e-08  Score=88.13  Aligned_cols=206  Identities=10%  Similarity=0.062  Sum_probs=124.5

Q ss_pred             cccceeeEEecCCCCcEEEEE-ecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC
Q 010769          265 HTDSVLGLAWNKEFRNILASA-SADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sg-s~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  341 (502)
                      +...+...+|||+|. .||-. ...+  .+.+.+...+... .+..+........|+|++..+++.....+...++....
T Consensus        37 ~~~~~~sP~wSPDGk-~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             ESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CCCceeeeEECCCCC-EEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            456788999999965 55544 3333  3666666655543 44457788899999999955555554555444443332


Q ss_pred             CCCc-cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769          342 STHS-GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL  420 (502)
Q Consensus       342 ~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l  420 (502)
                      .... ..............+++.+...+++...+|...+|-....        ......+..+........|+|++..++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~~~  186 (269)
T d2hqsa1         115 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN--------GGAPQRITWEGSQNQDADVSSDGKFMV  186 (269)
T ss_dssp             TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------SSCCEECCCSSSEEEEEEECTTSSEEE
T ss_pred             ccccceeeeeccccccccccccccccceecccccCCceEeeeecc--------cccceeeecccccccccccccccceeE
Confidence            2221 1122233444556677777767777777775544444332        133444455667778889999994445


Q ss_pred             EEEeCCCcEEEE--ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCcc
Q 010769          421 ATGSTDKMVKLW--DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAG  484 (502)
Q Consensus       421 ~t~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d--g~i~vwd~~~~~~  484 (502)
                      .+....+...+|  +.....  .  ....+.+......|+|||++|+.++...  ..|++|++..+..
T Consensus       187 ~~~~~~~~~~i~~~~~~~~~--~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         187 MVSSNGGQQHIAKQDLATGG--V--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEEECSSCEEEEEEETTTCC--E--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             EEeecCCceeeeEeeccccc--c--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            555555555554  444443  2  2333455677889999999765555433  3688999977654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.00  E-value=1.3e-07  Score=86.90  Aligned_cols=220  Identities=13%  Similarity=0.098  Sum_probs=147.2

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|+|+++++...++.|..|+.+...  .                           .+......+.+++|.+++ +++++.
T Consensus        36 ~pdG~l~vt~~~~~~I~~i~p~g~~--~---------------------------~~~~~~~~~~gla~~~dG-~l~v~~   85 (302)
T d2p4oa1          36 APDGTIFVTNHEVGEIVSITPDGNQ--Q---------------------------IHATVEGKVSGLAFTSNG-DLVATG   85 (302)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCCE--E---------------------------EEEECSSEEEEEEECTTS-CEEEEE
T ss_pred             CCCCCEEEEeCCCCEEEEEeCCCCE--E---------------------------EEEcCCCCcceEEEcCCC-CeEEEe
Confidence            7999999999999988888754210  0                           112344678999999994 588888


Q ss_pred             ecCCcEEEEECCCCee-eEEe--ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE----------eec
Q 010769          286 SADKQVKIWDVAAGKC-NLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----------AVA  352 (502)
Q Consensus       286 s~Dg~v~vwd~~~~~~-~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----------~~~  352 (502)
                      ..++.+.+|+...... ...+  .........+.+.+++ +++++.+..+.+..++...........          ...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (302)
T d2p4oa1          86 WNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  164 (302)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             cCCceEEEEEecccccceeeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcc
Confidence            8888888887654321 1111  2245668899999998 888888888888888877654221111          111


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW  432 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw  432 (502)
                      .....+.+..  ..++++.+..+.|..++......       ...............+++.++| +++++...++.|..+
T Consensus       165 ~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~pdgia~d~dG-~l~va~~~~~~V~~i  234 (302)
T d2p4oa1         165 PAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDK-------PGEPEIFVEQTNIDDFAFDVEG-NLYGATHIYNSVVRI  234 (302)
T ss_dssp             CSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSC-------BCCCEEEEESCCCSSEEEBTTC-CEEEECBTTCCEEEE
T ss_pred             cccccccccC--CceeeecCCCCeEEecccccccc-------ccccccccCCCCCcceEECCCC-CEEEEEcCCCcEEEE
Confidence            2345566654  45777888899999998876521       1111222234456789999998 788888888999999


Q ss_pred             ECCCCCeeEEEEecCCCCCEEEEEE---cCCCCcEEEE
Q 010769          433 DLSNNQPSCIASRNPKAGAVFSVAF---SEDSPFVLAI  467 (502)
Q Consensus       433 d~~~~~~~~~~~~~~~~~~v~~~~~---spd~~~llas  467 (502)
                      +.... ...+..........++++|   .+|++.|+++
T Consensus       235 ~p~G~-~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         235 APDRS-TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             CTTCC-EEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             CCCCC-EEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence            77643 3334444444556899999   6788865554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.98  E-value=9.8e-09  Score=100.92  Aligned_cols=153  Identities=13%  Similarity=0.219  Sum_probs=104.5

Q ss_pred             ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769          194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA  273 (502)
Q Consensus       194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  273 (502)
                      ..+.|       .+++.++...  ++.|.+||+.++....   ++                   ....+..|...|.+++
T Consensus        20 ~~~~W-------~~d~~~~~~~--~~~~~~~~~~t~~~~~---~~-------------------~~~~~~~~~~~i~~~~   68 (470)
T d2bgra1          20 YSLRW-------ISDHEYLYKQ--ENNILVFNAEYGNSSV---FL-------------------ENSTFDEFGHSINDYS   68 (470)
T ss_dssp             CCCEE-------CSSSEEEEES--SSCEEEEETTTCCEEE---EE-------------------CTTTTTTSSSCCCEEE
T ss_pred             cCCEe-------CCCCEEEEEc--CCcEEEEECCCCCEEE---EE-------------------chhhhhhccCccceeE
Confidence            45677       4778887754  6889999998654321   11                   1123456778899999


Q ss_pred             ecCCCCcEEEEEec---------CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          274 WNKEFRNILASASA---------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       274 ~~~~~~~~l~sgs~---------Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      |+|++ .+|+.++.         ++.+.|||+.+++. ..+..|...+..+.|+|+| +.++.. .++.+.+|+..++..
T Consensus        69 ~SpDg-~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~~~~~~~g~~  144 (470)
T d2bgra1          69 ISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPS  144 (470)
T ss_dssp             ECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCC
T ss_pred             ECCCC-CEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCc-ceeeEe-ecccceEEECCCCce
Confidence            99995 57776643         56789999998874 5577789999999999999 666664 477899999887765


Q ss_pred             ccceEe------------------ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 010769          345 SGFKWA------------------VAADVESLAWDPHAEHSFVVSLEDGTIKGFD  381 (502)
Q Consensus       345 ~~~~~~------------------~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d  381 (502)
                      ......                  ..+....+.|+|+|..++.....+..+..|.
T Consensus       145 ~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             eeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence            432211                  1123466889999885444444334344443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.94  E-value=3.4e-07  Score=84.45  Aligned_cols=204  Identities=8%  Similarity=0.042  Sum_probs=125.9

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCC----CCeEEEEEcCCCCcEEEEEEC-------------
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT----DKVQAVAWNHHSPQILLSGSF-------------  330 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~~-------------  330 (502)
                      .-..|+|.+++ +.|+++...+.|..++...+..........    ...+.+.+.++| ++.++-..             
T Consensus        72 ~P~Gl~~~~dg-~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          72 IPAGCQCDRDA-NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CEEEEEECSSS-SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTS
T ss_pred             cceeEEEeCCC-CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCC-CEEEecCccCcccccccceec
Confidence            45789999994 567777766778888977554322111111    135778999998 66665422             


Q ss_pred             --CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC----CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-C
Q 010769          331 --DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE----HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-H  403 (502)
Q Consensus       331 --dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h  403 (502)
                        .|.|..++..  .........-...+.++|+|++.    .++++-+..+.|..|++.......   .......+.. +
T Consensus       150 ~~~G~v~~~~~d--g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~---~~~~~~~~~~~~  224 (314)
T d1pjxa_         150 EKFGSIYCFTTD--GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE---NKKVWGHIPGTH  224 (314)
T ss_dssp             SSCEEEEEECTT--SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE---EEEEEEECCCCS
T ss_pred             cCCceEEEEeec--CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccc---eeeEEEEccccc
Confidence              1234333332  22222223334456788988653    355556778899999876431000   0001111111 1


Q ss_pred             CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       404 ~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ....-.+++..+| ++.++....+.|.+||...+.....  ........++++|.|+++.|+++.+.+|.|...++..
T Consensus       225 ~~~pdGiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~~~--i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         225 EGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMR--IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEE--EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cccceeeEEecCC-cEEEEEcCCCEEEEEeCCCCEEEEE--EECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            2335679999988 7777777788999999887764332  3333456889999999977788888888888877643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=3.3e-07  Score=83.01  Aligned_cols=238  Identities=14%  Similarity=0.139  Sum_probs=152.2

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE-
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS-  284 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s-  284 (502)
                      +++|+++++-.....|++|+.+. ..+..+...+                     ...+.......+++.++...++++ 
T Consensus        31 d~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~---------------------~~~~~~~~p~~~~~~~~~~~~~~~~   88 (279)
T d1q7fa_          31 NAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECG---------------------KRDSQLLYPNRVAVVRNSGDIIVTE   88 (279)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBS---------------------SSTTCBSSEEEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEECCCCEEEEEeCCC-CEEEEecccC---------------------CCcccccccccccccccccccceec
Confidence            68899888877788999998652 2111110000                     001122234455665554444443 


Q ss_pred             EecCCcEEEEECCCCeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe---ecCCeEEEEe
Q 010769          285 ASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADVESLAW  360 (502)
Q Consensus       285 gs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~v~~  360 (502)
                      .+.++.|.+++. .++....+. ........+++.+++ .++++....+.+.+++.... ... .+.   .......+++
T Consensus        89 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g~-~~~-~~g~~~~~~~~~~i~~  164 (279)
T d1q7fa_          89 RSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGN-VLH-KFGCSKHLEFPNGVVV  164 (279)
T ss_dssp             CGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSC-EEE-EEECTTTCSSEEEEEE
T ss_pred             cCCccccccccc-cccceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccCCc-eee-cccccccccccceeee
Confidence            345567878875 466666663 345667889999988 77777777778888876532 211 221   2345678888


Q ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe--cCCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEECCCC
Q 010769          361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSNN  437 (502)
Q Consensus       361 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~vwd~~~~  437 (502)
                      .+++. ++++....+.|++|+...          ..+..+.  ++.....+|++.++| +++++-+. ++.|.+|+. ++
T Consensus       165 d~~g~-i~v~d~~~~~V~~~d~~G----------~~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~-~G  231 (279)
T d1q7fa_         165 NDKQE-IFISDNRAHCVKVFNYEG----------QYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQ-DG  231 (279)
T ss_dssp             CSSSE-EEEEEGGGTEEEEEETTC----------CEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECT-TS
T ss_pred             cccee-EEeeeccccceeeeecCC----------ceeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEECC-CC
Confidence            88764 777788889999999753          3444442  344557899999998 67766543 457999985 45


Q ss_pred             CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          438 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       438 ~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      +................+++.|+|. +++ +..+.+|++|......+
T Consensus       232 ~~~~~~~~~~~~~~p~~vav~~dG~-l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         232 QLISALESKVKHAQCFDVALMDDGS-VVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CEEEEEEESSCCSCEEEEEEETTTE-EEE-EETTTEEEEEECSCCCC
T ss_pred             CEEEEEeCCCCCCCEeEEEEeCCCc-EEE-EeCCCeEEEEEeeeecC
Confidence            5333333344445688999999996 455 45788999999877654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.94  E-value=2e-07  Score=83.59  Aligned_cols=236  Identities=10%  Similarity=0.033  Sum_probs=143.3

Q ss_pred             ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010769          143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE  222 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~  222 (502)
                      ..+++.++|++.++.....    -++..+.....   ...... ..-...|..+++       +++++++++....+.|+
T Consensus        17 ~~vavd~dG~i~v~~~~~~----~~i~~~~~~~~---~~~~~~-~~~~~~p~gvav-------~~~g~i~v~d~~~~~i~   81 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMY----GRVVKLATGST---GTTVLP-FNGLYQPQGLAV-------DGAGTVYVTDFNNRVVT   81 (260)
T ss_dssp             EEEEECTTCCEEEEECSSS----CEEEEEC-------CEEECC-CCSCCSCCCEEE-------CTTCCEEEEETTTEEEE
T ss_pred             CEEEEcCCCCEEEEEcCCC----CEEEEEcCCCc---eEEEec-cCCccCceEEEE-------cCCCCEEEeeeeeceee
Confidence            5789999999877764332    15555554432   111110 011123444444       67898888887777777


Q ss_pred             EeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeee
Q 010769          223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN  302 (502)
Q Consensus       223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~  302 (502)
                      +++-.......                           . ........+|++.++ ++++++-.....+.+++.......
T Consensus        82 ~~~~~~~~~~~---------------------------~-~~~~~~p~~iavd~~-g~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          82 LAAGSNNQTVL---------------------------P-FDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             ECTTCSCCEEC---------------------------C-CCSCCSEEEEEECTT-CCEEEEEGGGTEEEEECTTCSSCE
T ss_pred             eeeeccceeee---------------------------e-eeeeeeccccccccc-ceeEeeccccccccccccccceee
Confidence            76543211110                           0 112345788999998 457776666777888776554322


Q ss_pred             EEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEEC
Q 010769          303 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI  382 (502)
Q Consensus       303 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~  382 (502)
                      ............+++.+++ +++++...++.|..++...................+++.+++. ++++....+.|..++.
T Consensus       133 ~~~~~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         133 VLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             ECCCCSCCSCCEEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECT
T ss_pred             eeeecccCCcceeeecCCC-CEeeeccccccccccccccceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeC
Confidence            2222223456789999988 7888888888999999876543332223345578899999764 7777777888888876


Q ss_pred             CCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010769          383 RTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS  435 (502)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~  435 (502)
                      ...          ....+ ...-.....|++++++ .++++-..++.|+.++..
T Consensus       211 ~~~----------~~~~~~~~~~~~P~~i~~d~~g-~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         211 GST----------TSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TCS----------CCEECCCCSCCCEEEEEECTTC-CEEEEEGGGTEEEEECCC
T ss_pred             CCC----------eEEEEccCCCCCeEEEEEeCCC-CEEEEECCCCEEEEEeCC
Confidence            543          11111 1222456889999987 777776667777766543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.93  E-value=1.1e-07  Score=87.41  Aligned_cols=231  Identities=10%  Similarity=0.095  Sum_probs=151.0

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA  220 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~  220 (502)
                      .++.+++.|+|+++++....+     +||.++....    ...+.  ..+..|.++++       +++|++++++...+.
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~-----~I~~i~p~g~----~~~~~--~~~~~~~gla~-------~~dG~l~v~~~~~~~   90 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVG-----EIVSITPDGN----QQIHA--TVEGKVSGLAF-------TSNGDLVATGWNADS   90 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTT-----EEEEECTTCC----EEEEE--ECSSEEEEEEE-------CTTSCEEEEEECTTS
T ss_pred             CcCCEEECCCCCEEEEeCCCC-----EEEEEeCCCC----EEEEE--cCCCCcceEEE-------cCCCCeEEEecCCce
Confidence            477899999999998887776     8899886542    22332  24455667766       789999999988889


Q ss_pred             EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe
Q 010769          221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK  300 (502)
Q Consensus       221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~  300 (502)
                      +.+|++........                        .............+.+.++ ++++++.+..+.+..++...+.
T Consensus        91 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~n~i~~~~~-g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1          91 IPVVSLVKSDGTVE------------------------TLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             CEEEEEECTTSCEE------------------------EEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEEeccccccee------------------------eccccCCccccceeEEccC-CCEEeeccccccceeeeccCCc
Confidence            98888754221110                        0011123456789999999 5688888888999999988765


Q ss_pred             eeEEec----------cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc--eEeecCCeEEEEeCCCCCCEE
Q 010769          301 CNLTLE----------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSF  368 (502)
Q Consensus       301 ~~~~~~----------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l  368 (502)
                      ......          ........+.+..  ..++++.+..+.|..++.........  ..........+++++++. ++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~  222 (302)
T d2p4oa1         146 GSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LY  222 (302)
T ss_dssp             EEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EE
T ss_pred             ceeEecCCccceeeccCcccccccccccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC-EE
Confidence            332211          1123455666654  36777888889999998876543321  223345567799999875 77


Q ss_pred             EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEE---cCCCCCEEEEEeCC
Q 010769          369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY---NPLVPNLLATGSTD  426 (502)
Q Consensus       369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---sp~~~~~l~t~s~d  426 (502)
                      ++...++.|..++....        ...+......-...++++|   ++++ +.|+.++..
T Consensus       223 va~~~~~~V~~i~p~G~--------~~~~~~~~~~~~~pt~vafg~~~~D~-~~Lyvtt~~  274 (302)
T d2p4oa1         223 GATHIYNSVVRIAPDRS--------TTIIAQAEQGVIGSTAVAFGQTEGDC-TAIYVVTNG  274 (302)
T ss_dssp             EECBTTCCEEEECTTCC--------EEEEECGGGTCTTEEEEEECCSTTTT-TEEEEEECT
T ss_pred             EEEcCCCcEEEECCCCC--------EEEEEecCCCCCCceEEEEcCCCCCC-CEEEEECCC
Confidence            77777888998876532        1122222334456789999   5566 555554443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.88  E-value=4.9e-07  Score=83.36  Aligned_cols=250  Identities=14%  Similarity=0.150  Sum_probs=149.6

Q ss_pred             ccccccccCCCceEEEEEecC--CcceeEEEEEecCCCCCCceeeeec---cccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          141 DLEDMTINPNDAVIVCARNED--DVSHLEVYILEESDGGDPNLYVHHH---IIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~--~~~~l~v~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      ..+.++|.|+|+++++.....  +...-+|+.++....   .....+.   ......|..+.+       .++++.|+++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~---~~~~~~~~~~~~~~g~P~Gl~~-------~~dg~~l~va   88 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG---KKTVICKPEVNGYGGIPAGCQC-------DRDANQLFVA   88 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC---CEEEEECCEETTEECCEEEEEE-------CSSSSEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCC---cEEEEECCccccCCCcceeEEE-------eCCCCEEEEE
Confidence            346678999999888753221  001126888887654   2222221   112233455554       7889888877


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCc-ccceeeEEecCCCCcEEEEEec-------
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASA-------  287 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~sgs~-------  287 (502)
                      ...+.|..++.+......                        ......+. -...+.+++.++| ++.++-+.       
T Consensus        89 d~~~~i~~~~~~g~~~~~------------------------~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~  143 (314)
T d1pjxa_          89 DMRLGLLVVQTDGTFEEI------------------------AKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPAD  143 (314)
T ss_dssp             ETTTEEEEEETTSCEEEC------------------------CSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSC
T ss_pred             ECCCeEEEEeCCCcEEEE------------------------EeccccccccCCCcEEEECCCC-CEEEecCccCccccc
Confidence            776778888875321100                        00000111 1236788999984 45555322       


Q ss_pred             --------CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCC----cEEEEEECCCcEEEEeCCCCCCccce--E-ee-
Q 010769          288 --------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP----QILLSGSFDRSVVMKDARISTHSGFK--W-AV-  351 (502)
Q Consensus       288 --------Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~--~-~~-  351 (502)
                              .|.|..++.. ++...... .-...+.++|+|++.    .++++-+..+.|..|++.........  + .. 
T Consensus       144 ~~~~~~~~~G~v~~~~~d-g~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~  221 (314)
T d1pjxa_         144 YTRSMQEKFGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP  221 (314)
T ss_dssp             CCBTTSSSCEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred             ccceeccCCceEEEEeec-CceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcc
Confidence                    2344444432 33332222 233456889988763    25556677888999988654332211  1 11 


Q ss_pred             ---cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769          352 ---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM  428 (502)
Q Consensus       352 ---~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~  428 (502)
                         ....-.+++..+|. ++++....+.|.+||...+         .....+..+....++++|.|++..+++|.+..+.
T Consensus       222 ~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~g---------~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~  291 (314)
T d1pjxa_         222 GTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGG---------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA  291 (314)
T ss_dssp             CCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCB---------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTE
T ss_pred             ccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCCC---------EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCc
Confidence               12345789998875 6777778899999998765         4556666666778999999988557788888888


Q ss_pred             EEEEECCCC
Q 010769          429 VKLWDLSNN  437 (502)
Q Consensus       429 i~vwd~~~~  437 (502)
                      |..+++...
T Consensus       292 i~~~~~~~~  300 (314)
T d1pjxa_         292 VWKFEWQRN  300 (314)
T ss_dssp             EEEEECSSC
T ss_pred             EEEEECCCC
Confidence            888887543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.76  E-value=9.8e-06  Score=74.52  Aligned_cols=231  Identities=7%  Similarity=-0.013  Sum_probs=136.9

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .++|++.++-...+.|..|+.+.....                           ............|++.+++ .++++.
T Consensus        48 D~~G~Ly~~D~~~g~I~ri~p~g~~~~---------------------------~~~~~~~~~p~gla~~~dG-~l~va~   99 (319)
T d2dg1a1          48 DRQGQLFLLDVFEGNIFKINPETKEIK---------------------------RPFVSHKANPAAIKIHKDG-RLFVCY   99 (319)
T ss_dssp             CTTSCEEEEETTTCEEEEECTTTCCEE---------------------------EEEECSSSSEEEEEECTTS-CEEEEE
T ss_pred             CCCCCEEEEECCCCEEEEEECCCCeEE---------------------------EEEeCCCCCeeEEEECCCC-CEEEEe
Confidence            678998888878898988887642111                           1111233457899999995 465554


Q ss_pred             ec----CCcEEEEECCCCeeeEEecc--CCCCeEEEEEcCCCCcEEEEEECC------CcEEEEeCCCCCCccceEeecC
Q 010769          286 SA----DKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSGFKWAVAA  353 (502)
Q Consensus       286 s~----Dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~  353 (502)
                      ..    .+.|...+............  -...+..+.+.++| ++.++....      +.+..++..... .......-.
T Consensus       100 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~  177 (319)
T d2dg1a1         100 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNIS  177 (319)
T ss_dssp             CTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEES
T ss_pred             cCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccce-eEEEeeccc
Confidence            33    23455555555444333321  13457789999999 665554321      234444443322 222223334


Q ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769          354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD  433 (502)
Q Consensus       354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd  433 (502)
                      ..+.++|+|++..++++-+..+.|..|++.......... ................+++.++| ++.++....+.|.+|+
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~-~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF-GATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE-EEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEEC
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc-cceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEEEEEC
Confidence            567899999987666777788999999987541100000 00000111112235679999998 7888888899999999


Q ss_pred             CCCCCeeEEEEec----CCCCCEEEEEEcCCCCcEEEEEe
Q 010769          434 LSNNQPSCIASRN----PKAGAVFSVAFSEDSPFVLAIGG  469 (502)
Q Consensus       434 ~~~~~~~~~~~~~----~~~~~v~~~~~spd~~~llasg~  469 (502)
                      . .++......+.    .+...+++++|.|.+..++++..
T Consensus       256 p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         256 K-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             T-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             C-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            6 56643333333    23446789999998875555543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.69  E-value=4.6e-06  Score=75.23  Aligned_cols=237  Identities=13%  Similarity=0.151  Sum_probs=145.2

Q ss_pred             ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeecc----ccCCCcceeeeecCCCCCCCCCCEEEE-ecC
Q 010769          143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI----IIPAFPLCMAWLDCPLKDREKGNFMAV-GSM  217 (502)
Q Consensus       143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~w~~~~~~~s~~~~~la~-g~~  217 (502)
                      ..+++.|+++++++-....     +|.+|+....   .+...-..    .....|..+.+.      ...+.++++ .+.
T Consensus        26 ~gvavd~dg~i~VaD~~n~-----rI~v~d~~G~---~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~   91 (279)
T d1q7fa_          26 SGVAVNAQNDIIVADTNNH-----RIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVV------RNSGDIIVTERSP   91 (279)
T ss_dssp             EEEEECTTCCEEEEEGGGT-----EEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEE------TTTTEEEEEECGG
T ss_pred             cEEEEcCCCCEEEEECCCC-----EEEEEeCCCC---EEEEecccCCCccccccccccccc------ccccccceeccCC
Confidence            5789999999888766554     6777765432   11111000    011123333322      122444443 344


Q ss_pred             CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769          218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA  297 (502)
Q Consensus       218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~  297 (502)
                      ++.|.+++.... .                          .............++++.++ +.++++....+.+.+++. 
T Consensus        92 ~~~i~~~~~~g~-~--------------------------~~~~~~~~~~~p~~~avd~~-G~i~v~~~~~~~~~~~~~-  142 (279)
T d1q7fa_          92 THQIQIYNQYGQ-F--------------------------VRKFGATILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQ-  142 (279)
T ss_dssp             GCEEEEECTTSC-E--------------------------EEEECTTTCSCEEEEEECTT-SCEEEEETTTTEEEEECT-
T ss_pred             cccccccccccc-c--------------------------eeecCCCcccccceeccccC-CcEEEEeeccceeeEecc-
Confidence            566777665321 0                          00011123456778889888 457777777778888885 


Q ss_pred             CCeeeEEe--ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe---ecCCeEEEEeCCCCCCEEEEEe
Q 010769          298 AGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADVESLAWDPHAEHSFVVSL  372 (502)
Q Consensus       298 ~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~v~~~p~~~~~l~~~~  372 (502)
                      .++.+.++  ..+......+++.+++ +++++....+.|.+|+..... .. .+.   .......+++.+++. ++++-.
T Consensus       143 ~g~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G~~-~~-~~g~~g~~~~P~giavD~~G~-i~Vad~  218 (279)
T d1q7fa_         143 NGNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY-LR-QIGGEGITNYPIGVGINSNGE-ILIADN  218 (279)
T ss_dssp             TSCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE-EE-EESCTTTSCSEEEEEECTTCC-EEEEEC
T ss_pred             CCceeecccccccccccceeeeccce-eEEeeeccccceeeeecCCce-ee-eecccccccCCcccccccCCe-EEEEEC
Confidence            46666665  3456778899999988 888888889999999976432 11 222   223478899999875 555543


Q ss_pred             -CCCeEEEEECCCCCCCCCCCCCCccEEEecC--CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769          373 -EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ  438 (502)
Q Consensus       373 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~  438 (502)
                       .++.|.+|+.. +         ..+..+...  ......|++.|+| .++ ++..++.|++|......
T Consensus       219 ~~~~~v~~f~~~-G---------~~~~~~~~~~~~~~p~~vav~~dG-~l~-V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         219 HNNFNLTIFTQD-G---------QLISALESKVKHAQCFDVALMDDG-SVV-LASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             SSSCEEEEECTT-S---------CEEEEEEESSCCSCEEEEEEETTT-EEE-EEETTTEEEEEECSCCC
T ss_pred             CCCcEEEEECCC-C---------CEEEEEeCCCCCCCEeEEEEeCCC-cEE-EEeCCCeEEEEEeeeec
Confidence             45579999843 2         445454332  3457899999987 554 45678999999987654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.2e-05  Score=74.91  Aligned_cols=316  Identities=12%  Similarity=0.129  Sum_probs=157.9

Q ss_pred             cccccccccCCCceEEEEEecCCc----ceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769          140 EDLEDMTINPNDAVIVCARNEDDV----SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG  215 (502)
Q Consensus       140 ~~v~~~~~~p~~~~l~~~~~~~~~----~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g  215 (502)
                      -.+....|+|+++.|+.+......    ..-.+|+|+...+   ....-...  ......+.+    +.|||+|+.||-.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~---~~~~l~~~--~~~~~~l~~----~~wSPDG~~iafv  131 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG---DPQSLDPP--EVSNAKLQY----AGWGPKGQQLIFI  131 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC---CCEECCCT--TCCSCCCSB----CCBCSSTTCEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC---ceeeccCc--cCCccccce----eeeccCCceEEEE
Confidence            356677899999999887642211    1125666665554   21111100  001111111    4459999999887


Q ss_pred             cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcc---------cceeeEEecCCCCcEEEEEe
Q 010769          216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT---------DSVLGLAWNKEFRNILASAS  286 (502)
Q Consensus       216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~V~~l~~~~~~~~~l~sgs  286 (502)
                      . ++.|.+.+.......+.  +..+..             .   ..+.|..         ..-..+.|||++. .||...
T Consensus       132 ~-~~nl~~~~~~~~~~~~l--t~~g~~-------------~---~i~nG~~d~vyeee~~~~~~a~~WSPDgk-~iaf~~  191 (465)
T d1xfda1         132 F-ENNIYYCAHVGKQAIRV--VSTGKE-------------G---VIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAA  191 (465)
T ss_dssp             E-TTEEEEESSSSSCCEEE--ECCCBT-------------T---TEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEE
T ss_pred             e-cceEEEEecCCCceEEE--ecccCc-------------c---eeeccccchhhhhhhccccceEEECCCCC-eEEEEE
Confidence            5 56788877764332211  111000             0   0011111         1124677999955 555543


Q ss_pred             -cCCcE---------------------------------EEEECCCCeeeEEe------ccCCCCeEEEEEcCCCCcEEE
Q 010769          287 -ADKQV---------------------------------KIWDVAAGKCNLTL------EHHTDKVQAVAWNHHSPQILL  326 (502)
Q Consensus       287 -~Dg~v---------------------------------~vwd~~~~~~~~~~------~~h~~~v~~l~~~~~~~~~l~  326 (502)
                       .+..|                                 .|+|+.++......      .....-+..+.|++++ .+++
T Consensus       192 ~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~-~~~~  270 (465)
T d1xfda1         192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAV  270 (465)
T ss_dssp             EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEE
T ss_pred             ecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCC-eEEE
Confidence             23333                                 34444333221111      0111236778999988 5554


Q ss_pred             EEE-CC---CcEEEEeCCCCCCccceEee-cCCe----EEEEeCCCCCCEEEE--EeCCC--eEEEEECCCCCCCCCCCC
Q 010769          327 SGS-FD---RSVVMKDARISTHSGFKWAV-AADV----ESLAWDPHAEHSFVV--SLEDG--TIKGFDIRTAKSDPDSTS  393 (502)
Q Consensus       327 s~~-~d---g~i~vwd~~~~~~~~~~~~~-~~~v----~~v~~~p~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~  393 (502)
                      ... .+   ..|.++|..++......... .+.|    ....|+|++..+++.  .-.+|  .++.+.+........   
T Consensus       271 ~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~---  347 (465)
T d1xfda1         271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS---  347 (465)
T ss_dssp             EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS---
T ss_pred             EEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCC---
Confidence            433 22   25778888887655433222 2222    345788888765443  22333  344444322110000   


Q ss_pred             CCccEEEecCCCCeeEE-EEcCCCCCEEEEEeCCC--cEEEE--ECCCCC-eeEEEEecCCCCCEEEEEEcCCCCcEEEE
Q 010769          394 QQSSFTLHAHDKAVCTI-SYNPLVPNLLATGSTDK--MVKLW--DLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAI  467 (502)
Q Consensus       394 ~~~~~~~~~h~~~v~~l-~~sp~~~~~l~t~s~dg--~i~vw--d~~~~~-~~~~~~~~~~~~~v~~~~~spd~~~llas  467 (502)
                      ...+..+....-.|..+ +|.+.+..+.+++..++  .-.||  ++.... ..++...........++.|||++.|++.+
T Consensus       348 ~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~  427 (465)
T d1xfda1         348 NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (465)
T ss_dssp             SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             CceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEE
Confidence            12223333334445554 58887745555665432  22344  443332 12222122334457799999999986655


Q ss_pred             EeCC--CcEEEEECCCCcccccc
Q 010769          468 GGSK--GKLEIWDTLSDAGISNR  488 (502)
Q Consensus       468 g~~d--g~i~vwd~~~~~~~~~~  488 (502)
                      ++.-  -.+.+++..+++.+..+
T Consensus       428 ~s~~~~P~~~~~~~~~~~~~~~L  450 (465)
T d1xfda1         428 CEGPGVPMVTVHNTTDKKKMFDL  450 (465)
T ss_dssp             CCSSSSCCEEEEETTTCCEEEEE
T ss_pred             eecCCCCeEEEEECCCCCEEEEE
Confidence            5442  25788888888876654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.52  E-value=3.1e-05  Score=71.09  Aligned_cols=207  Identities=9%  Similarity=0.061  Sum_probs=130.8

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC----CcEEEEeCCCC
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----RSVVMKDARIS  342 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~  342 (502)
                      ..+..++|.+++ +++++-...+.|..|+..++.....+.........|+++++| +++++...+    +.+...+....
T Consensus        40 ~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          40 LQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cCcEeCEECCCC-CEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCc
Confidence            345689999984 577777788999999988776666555556678999999998 766665432    33455555443


Q ss_pred             CCccceE--eecCCeEEEEeCCCCCCEEEEEeC------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769          343 THSGFKW--AVAADVESLAWDPHAEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP  414 (502)
Q Consensus       343 ~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp  414 (502)
                      .......  .....+..+++.++|. ++++...      .+.+..++...          ..+..+...-...+.++|+|
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg----------~~~~~~~~~~~~pnGia~s~  186 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF----------RTVTPIIQNISVANGIALST  186 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS----------CCEEEEEEEESSEEEEEECT
T ss_pred             eeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc----------ceeEEEeeccceeeeeeecc
Confidence            3322111  1123467788999875 4443321      22344444332          22333333334567899999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCe-e-----EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          415 LVPNLLATGSTDKMVKLWDLSNNQP-S-----CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       415 ~~~~~l~t~s~dg~i~vwd~~~~~~-~-----~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ++..+.++-+..+.|..|++..... .     ..............|++.++|+ +.++....+.|.+|+. .++.+.++
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECC-CCcEEEEE
Confidence            9844666767788999999864321 0     1111122223467899999998 6777788899999996 57766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.43  E-value=0.00039  Score=62.59  Aligned_cols=195  Identities=11%  Similarity=0.061  Sum_probs=122.9

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc----CCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEe
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSF----DRSVVMKD  338 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~----dg~i~vwd  338 (502)
                      ..+.++++.++ +.+++ ++.+ .|.++|..+++.......    ....+..+.+.|+| ++.++...    .+.-.+|.
T Consensus        59 ~~~~~i~~~~d-g~l~v-a~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          59 FMGSALAKISD-SKQLI-ASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             SCEEEEEEEET-TEEEE-EETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEE
T ss_pred             CCcEEEEEecC-CCEEE-EEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCC-CEEEEeccccccccceeEee
Confidence            45788998888 43554 4554 589999998875443321    12357889999999 65555432    23445666


Q ss_pred             CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769          339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                      +..++... ....-...+.++|++++..++++-+..+.|..|++......... ............+...++++..+| +
T Consensus       135 ~~~g~~~~-~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~-~~~~~~~~~~~~g~pdG~~vD~~G-n  211 (295)
T d2ghsa1         135 VAKGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-KAEVFIDSTGIKGGMDGSVCDAEG-H  211 (295)
T ss_dssp             EETTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-CCEEEEECTTSSSEEEEEEECTTS-C
T ss_pred             ecCCcEEE-EeeccCCcceeeecCCCceEEEeecccceeeEeeeccccccccc-ceEEEeccCcccccccceEEcCCC-C
Confidence            65544322 23334456789999998877777788899999987543111000 001111222344567889999988 7


Q ss_pred             EEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc-CCCCcEEEEEeCC
Q 010769          419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSK  471 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~llasg~~d  471 (502)
                      +.++.-..+.|..||. .++....  +......+++++|- |+...|++|+...
T Consensus       212 lWva~~~~g~V~~~dp-~G~~~~~--i~lP~~~~T~~~FGG~d~~~LyvTta~~  262 (295)
T d2ghsa1         212 IWNARWGEGAVDRYDT-DGNHIAR--YEVPGKQTTCPAFIGPDASRLLVTSARE  262 (295)
T ss_dssp             EEEEEETTTEEEEECT-TCCEEEE--EECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EEeeeeCCCceEEecC-CCcEeeE--ecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence            7777667788999996 4554333  33334569999995 6777677776553

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=0.00023  Score=62.97  Aligned_cols=213  Identities=7%  Similarity=0.041  Sum_probs=136.0

Q ss_pred             cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769          265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH  344 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  344 (502)
                      +...+.+|+|.+..+.++.+-...+.|+..++..+.....+......+.++++...+.++..+-...+.|.+.++.....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            44568889998874545555566788999998766554444444467889999876645666666778999999886654


Q ss_pred             ccceEeecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE
Q 010769          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT  422 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t  422 (502)
                      ..........+..++++|....++.+-...+  .|...++...         .........-....+|++.+.+.++..+
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~---------~~~~i~~~~~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---------NRRILAQDNLGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---------CCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC---------CceeeeeecccccceEEEeecCcEEEEE
Confidence            3322222356789999998775555543323  3444454432         2222222233456899999877455556


Q ss_pred             EeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      -...+.|...++.......+..  +. ....+|++.  +.+++.+-...+.|...|..+++.+......
T Consensus       185 d~~~~~I~~~~~~g~~~~~v~~--~~-~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~  248 (263)
T d1npea_         185 DAGTHRAECLNPAQPGRRKVLE--GL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH  248 (263)
T ss_dssp             ETTTTEEEEEETTEEEEEEEEE--CC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCS
T ss_pred             eCCCCEEEEEECCCCCeEEEEC--CC-CCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCC
Confidence            5667889999997765333332  22 234678876  3446777667789999999988877655543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=0.0012  Score=58.13  Aligned_cols=214  Identities=12%  Similarity=0.070  Sum_probs=134.2

Q ss_pred             ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe----eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC
Q 010769          266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI  341 (502)
Q Consensus       266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  341 (502)
                      ...+.+|.|.+....+..+-...+.|...++....    ....+......+..|++.+.+.++..+-...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            34567899988744444444456777777665321    12222333355677888877756677667778999999886


Q ss_pred             CCCccceEeecCCeEEEEeCCCCCCEEEEE-eCCCeEEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCE
Q 010769          342 STHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNL  419 (502)
Q Consensus       342 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~  419 (502)
                      ................++.+|....++++. +..+.|...++...          ....+ ...-...+++++.+.+.++
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs----------~~~~l~~~~~~~p~gl~iD~~~~~l  178 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV----------DIYSLVTENIQWPNGITLDLLSGRL  178 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----------CEEEEECSSCSCEEEEEEETTTTEE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC----------ceecccccccceeeEEEeeccccEE
Confidence            654433333345688899998766455543 23456666666532          22233 2333567899999877455


Q ss_pred             EEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769          420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK  491 (502)
Q Consensus       420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~  491 (502)
                      ..+-+..+.|...++.......+...........++++..  .+++.+-..++.|...+..++..+..+...
T Consensus       179 Yw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~--~~ly~td~~~~~I~~~~~~~g~~~~~~~~~  248 (266)
T d1ijqa1         179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLLAEN  248 (266)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred             EEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC--CEEEEEECCCCeEEEEECCCCcceEEEEcC
Confidence            5665677889999997765444444444444567788774  346777667788988888888766555443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.4e-05  Score=74.77  Aligned_cols=234  Identities=10%  Similarity=0.083  Sum_probs=127.5

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      .+++.++.. ..+|.|.+|++.+....   .++.                     ...-..-.+....|+|++..+|+..
T Consensus        25 ~~~~~~~~~-~~~g~i~~~~~~~~~~~---~l~~---------------------~~~~~~~~~~~~~~SpD~~~vl~~~   79 (465)
T d1xfda1          25 ISDTEFIYR-EQKGTVRLWNVETNTST---VLIE---------------------GKKIESLRAIRYEISPDREYALFSY   79 (465)
T ss_dssp             SSSSCBCCC-CSSSCEEEBCGGGCCCE---EEEC---------------------TTTTTTTTCSEEEECTTSSEEEEEE
T ss_pred             eCCCcEEEE-eCCCcEEEEECCCCCEE---EEEc---------------------CccccccccceeEECCCCCeEEEEE
Confidence            466666543 45688999998653221   1110                     0011223567788999965444432


Q ss_pred             --------ecCCcEEEEECCCCeeeEEe--ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE------
Q 010769          286 --------SADKQVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------  349 (502)
Q Consensus       286 --------s~Dg~v~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------  349 (502)
                              +..+.+.++|+.++......  ......+....|+|+| +.++-.. ++.|.+.+...+.......      
T Consensus        80 ~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG-~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~  157 (465)
T d1xfda1          80 NVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGV  157 (465)
T ss_dssp             SCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEE-TTEEEEESSSSSCCEEEECCCBTTT
T ss_pred             cccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCC-ceEEEEe-cceEEEEecCCCceEEEecccCcce
Confidence                    33578899999988654332  2334566778999999 5455443 5678888876654433221      


Q ss_pred             ---eec---------CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769          350 ---AVA---------ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP  417 (502)
Q Consensus       350 ---~~~---------~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~  417 (502)
                         +..         +.-..+-|+|+|..+++....+..|..+.+.....       .       ....+..+.+-.-| 
T Consensus       158 i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~-------~-------~~p~~~~~~Yp~~G-  222 (465)
T d1xfda1         158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-------S-------IYPTVKPYHYPKAG-  222 (465)
T ss_dssp             EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-------S-------SSCCCEEEECCBTT-
T ss_pred             eeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccc-------c-------ccceeeeeeccccC-
Confidence               111         11256789999986655555666666665543210       0       00111222221111 


Q ss_pred             CEEEEEeCCCcEEEEECCCCCeeEEEEe----cCCCCCEEEEEEcCCCCcEEEEEeCCC---cEEEEECCCCccc
Q 010769          418 NLLATGSTDKMVKLWDLSNNQPSCIASR----NPKAGAVFSVAFSEDSPFVLAIGGSKG---KLEIWDTLSDAGI  485 (502)
Q Consensus       418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~~----~~~~~~v~~~~~spd~~~llasg~~dg---~i~vwd~~~~~~~  485 (502)
                      .-    .....+.|+|+..+........    .....-+..+.|+|+++.++.....+.   .|.++|+.++++.
T Consensus       223 ~~----np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         223 SE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             SC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             CC----CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence            00    0012477788866542211111    111223678999999985444444332   5888999888754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.19  E-value=0.00046  Score=62.10  Aligned_cols=228  Identities=12%  Similarity=0.097  Sum_probs=138.3

Q ss_pred             ccccccCCCc-eEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010769          143 EDMTINPNDA-VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI  221 (502)
Q Consensus       143 ~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I  221 (502)
                      +...|.+.++ +..+--..+     +|+.++...+   ....+   .++..+.++.+       .++|+++++. .+ -|
T Consensus        21 Egp~wd~~~~~l~wvDi~~~-----~I~r~d~~~g---~~~~~---~~~~~~~~i~~-------~~dg~l~va~-~~-gl   80 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILER-----ELHELHLASG---RKTVH---ALPFMGSALAK-------ISDSKQLIAS-DD-GL   80 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGT-----EEEEEETTTT---EEEEE---ECSSCEEEEEE-------EETTEEEEEE-TT-EE
T ss_pred             eCCeEECCCCEEEEEECCCC-----EEEEEECCCC---eEEEE---ECCCCcEEEEE-------ecCCCEEEEE-eC-cc
Confidence            3456776544 444433333     8888887665   33322   25666677765       3567766654 44 57


Q ss_pred             EEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec----CCcEEEEECC
Q 010769          222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA----DKQVKIWDVA  297 (502)
Q Consensus       222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~----Dg~v~vwd~~  297 (502)
                      .++|..+..... +..                      .........++.+.+.|+|. +.++...    .+.-.+|.+.
T Consensus        81 ~~~d~~tg~~~~-l~~----------------------~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          81 FLRDTATGVLTL-HAE----------------------LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             EEEETTTCCEEE-EEC----------------------SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE
T ss_pred             EEeecccceeeE-Eee----------------------eecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeec
Confidence            788886532110 000                      00011234688899999954 4444332    2345677777


Q ss_pred             CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc----cce-Ee---ecCCeEEEEeCCCCCCEEE
Q 010769          298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS----GFK-WA---VAADVESLAWDPHAEHSFV  369 (502)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~-~~---~~~~v~~v~~~p~~~~~l~  369 (502)
                      .++....+.. -.....+.|++++..++++-+..+.|..|++......    ... ..   ..+..-.+++..+|. +.+
T Consensus       137 ~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWv  214 (295)
T d2ghsa1         137 KGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWN  214 (295)
T ss_dssp             TTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEE
T ss_pred             CCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEe
Confidence            7765554433 3356789999999667777778899999987532211    111 11   234467888988764 667


Q ss_pred             EEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEc-CCCCCEEEEEeCC
Q 010769          370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN-PLVPNLLATGSTD  426 (502)
Q Consensus       370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-p~~~~~l~t~s~d  426 (502)
                      +....+.|..||.. +         +.+..+......+++++|- |+...+++|....
T Consensus       215 a~~~~g~V~~~dp~-G---------~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~  262 (295)
T d2ghsa1         215 ARWGEGAVDRYDTD-G---------NHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  262 (295)
T ss_dssp             EEETTTEEEEECTT-C---------CEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             eeeCCCceEEecCC-C---------cEeeEecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence            76778899999964 3         5666666666779999996 5554566665543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.16  E-value=0.0001  Score=65.49  Aligned_cols=237  Identities=8%  Similarity=-0.034  Sum_probs=118.2

Q ss_pred             CCC--CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769          206 REK--GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA  283 (502)
Q Consensus       206 s~~--~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  283 (502)
                      +|+  |+.+|-.+ +|.|.+.++..+..                            ..+..+...+...+|||+|..+.+
T Consensus         7 sPdi~G~~v~f~~-~~dl~~~d~~~g~~----------------------------~~Lt~~~~~~~~p~~SPDG~~iaf   57 (281)
T d1k32a2           7 NPDIHGDRIIFVC-CDDLWEHDLKSGST----------------------------RKIVSNLGVINNARFFPDGRKIAI   57 (281)
T ss_dssp             EEEEETTEEEEEE-TTEEEEEETTTCCE----------------------------EEEECSSSEEEEEEECTTSSEEEE
T ss_pred             CCCCCCCEEEEEe-CCcEEEEECCCCCE----------------------------EEEecCCCcccCEEECCCCCEEEE
Confidence            688  99888664 46787778874321                            112245667889999999664444


Q ss_pred             EEecCC-----cEEEEECCCCeeeEEec------cCCCCeEEEEEcCCCCcEEEEEECC------CcEEEEeCCCCCCcc
Q 010769          284 SASADK-----QVKIWDVAAGKCNLTLE------HHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHSG  346 (502)
Q Consensus       284 sgs~Dg-----~v~vwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~  346 (502)
                      +...++     .|.++++.+++......      ..........|+|++ +.|+.....      ..+...+......  
T Consensus        58 ~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~--  134 (281)
T d1k32a2          58 RVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDG-NLIISTDAMQPFSSMTCLYRVENDGINF--  134 (281)
T ss_dssp             EEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTC-CEEEEECTTSSSTTCCEEEEEEGGGTEE--
T ss_pred             EEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCC-CEEEEEEccCCCccceeeeeecCCCcee--
Confidence            443333     47778887776544221      112345678899999 555544322      1233333332211  


Q ss_pred             ceEeecCCeEEEEeCCCCCCEEEEEeCCCe-----------EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769          347 FKWAVAADVESLAWDPHAEHSFVVSLEDGT-----------IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL  415 (502)
Q Consensus       347 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~-----------i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~  415 (502)
                       ..........+ |.+++...++.......           ........          ........+........++++
T Consensus       135 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  202 (281)
T d1k32a2         135 -VPLNLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS----------GAFKKIVDMSTHVSSPVIVGH  202 (281)
T ss_dssp             -EECCSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET----------TEEEEEECCSSCCEEEEEETT
T ss_pred             -EEecCCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccc----------cceeeccCCccccceeeeecc
Confidence             11111111222 22222222222111110           00000000          111122223344455555653


Q ss_pred             CCCEEEEEeCC--CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010769          416 VPNLLATGSTD--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS  493 (502)
Q Consensus       416 ~~~~l~t~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~  493 (502)
                        .++.....+  ..|.++|+.+.....+...  ....  ...|+|||+.|+.+  .++.|+++|+.+++.-+-..+...
T Consensus       203 --~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~--~~~~--~~~~SpDG~~I~f~--~~~~l~~~d~~~g~~~~i~~~~~~  274 (281)
T d1k32a2         203 --RIYFITDIDGFGQIYSTDLDGKDLRKHTSF--TDYY--PRHLNTDGRRILFS--KGGSIYIFNPDTEKIEKIEIGDLE  274 (281)
T ss_dssp             --EEEEEECTTSSCEEEEEETTSCSCEECCCC--CSSC--EEEEEESSSCEEEE--ETTEEEEECTTTCCEEECCCCCCC
T ss_pred             --ccceecccccccceEEEeCCCCceEEeecC--CCcc--cccCcCCCCEEEEE--eCCEEEEEECCCCCEEEeccCCcC
Confidence              333333333  3577888887764332211  1222  34689999975543  457899999988876544444433


Q ss_pred             C
Q 010769          494 K  494 (502)
Q Consensus       494 ~  494 (502)
                      .
T Consensus       275 ~  275 (281)
T d1k32a2         275 S  275 (281)
T ss_dssp             B
T ss_pred             C
Confidence            3

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.90  E-value=0.0011  Score=61.06  Aligned_cols=259  Identities=12%  Similarity=0.152  Sum_probs=152.7

Q ss_pred             EEEecCCCcEEEeeCCCCCCCCceeeeCCcchh------hhhhccccCCc---cccc------cccCCcccceeeEEecC
Q 010769          212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKKKSKKGKK---SSIK------YKKGSHTDSVLGLAWNK  276 (502)
Q Consensus       212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~---~~~~------~~~~~h~~~V~~l~~~~  276 (502)
                      +.+|+..|.|+|+-+.++..+..+.++...+..      ..++.......   +...      ....+-..-. .+++..
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP-~~S~Td   94 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV-HMSFTE   94 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE-EEEEET
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC-cccccC
Confidence            668899999999999998887776666543322      11111111000   0000      0011111111 556644


Q ss_pred             ---CCCcEEEEEecCCcEEEEECCCCeeeEEecc-CCCCeEEEEEcCCCC-cEEEEEECC------------------Cc
Q 010769          277 ---EFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSP-QILLSGSFD------------------RS  333 (502)
Q Consensus       277 ---~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~-~~l~s~~~d------------------g~  333 (502)
                         +|+.+++.-..+.+|.+-|+.+.++.+.+.. ....+..++..+... .+++.++..                  +.
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence               6666666777899999999999988664432 345567777655432 456655542                  23


Q ss_pred             EEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC-------------------------------------Ce
Q 010769          334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED-------------------------------------GT  376 (502)
Q Consensus       334 i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d-------------------------------------g~  376 (502)
                      +.++|..+.+.. ......+....+.++++|...++++...                                     +.
T Consensus       175 ~t~ID~~tm~V~-~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         175 FTAVDADKWEVA-WQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEETTTTEEE-EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEecCCceEE-EEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            566777765433 2445566778899999988555555321                                     22


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC--------e--eEEEEec
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--------P--SCIASRN  446 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~--------~--~~~~~~~  446 (502)
                      +.+.|.+....      ...+..+... .....+.++|+|..+++++..+.++.|+|++...        +  .......
T Consensus       254 V~VVD~~~~~~------~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         254 VKVVDGRKEAS------SLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             EEEEECSGG--------CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             ceeecccccCC------cceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence            34444443210      1223333333 3357889999996666667779999999996421        1  1222223


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                      ...+ -...+|...|. ...|---|..|.-|++..
T Consensus       327 lglg-PLht~fd~~g~-aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         327 LGLG-PLHTAFDGRGN-AYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CCSC-EEEEEECTTSE-EEEEETTTTEEEEEEHHH
T ss_pred             cCcC-ccccccCCCce-EEEEeeccceEEEEecch
Confidence            2333 45678999885 577777899999999843

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.81  E-value=0.00069  Score=59.79  Aligned_cols=236  Identities=9%  Similarity=0.039  Sum_probs=111.6

Q ss_pred             ccccCC--CceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC----C
Q 010769          145 MTINPN--DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM----E  218 (502)
Q Consensus       145 ~~~~p~--~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~----d  218 (502)
                      +.++|+  |+.||..+. +     .||+++...+....|..+..     ......|       ||||+.||....    .
T Consensus         4 ~~~sPdi~G~~v~f~~~-~-----dl~~~d~~~g~~~~Lt~~~~-----~~~~p~~-------SPDG~~iaf~~~~~~~~   65 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVCC-D-----DLWEHDLKSGSTRKIVSNLG-----VINNARF-------FPDGRKIAIRVMRGSSL   65 (281)
T ss_dssp             CCEEEEEETTEEEEEET-T-----EEEEEETTTCCEEEEECSSS-----EEEEEEE-------CTTSSEEEEEEEESTTC
T ss_pred             cccCCCCCCCEEEEEeC-C-----cEEEEECCCCCEEEEecCCC-----cccCEEE-------CCCCCEEEEEEeeCCCC
Confidence            467899  999887754 3     79999887663222222211     1123344       999999986532    2


Q ss_pred             C--cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec------CCc
Q 010769          219 P--AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA------DKQ  290 (502)
Q Consensus       219 g--~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~------Dg~  290 (502)
                      .  .|.++++..+....- .                    ................+|+|++. .|+....      ...
T Consensus        66 ~~~~i~~~~~~~g~~~~l-t--------------------~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~  123 (281)
T d1k32a2          66 NTADLYFYNGENGEIKRI-T--------------------YFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTC  123 (281)
T ss_dssp             CEEEEEEEETTTTEEEEC-C--------------------CCCEEEETTEECSEEEEECTTCC-EEEEECTTSSSTTCCE
T ss_pred             CceEEEEEEecCCceEEe-e--------------------ecCCCccCccccccccccCCCCC-EEEEEEccCCCcccee
Confidence            2  355555543321110 0                    00000112234457788999955 5554322      123


Q ss_pred             EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc-----------EEEEeCCCCCCccceEeecCCeEEEE
Q 010769          291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS-----------VVMKDARISTHSGFKWAVAADVESLA  359 (502)
Q Consensus       291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~-----------i~vwd~~~~~~~~~~~~~~~~v~~v~  359 (502)
                      +.+.+...+......   ......+ |.+++...++.......           ..+....... ...............
T Consensus       124 ~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  198 (281)
T d1k32a2         124 LYRVENDGINFVPLN---LGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIVDMSTHVSSPV  198 (281)
T ss_dssp             EEEEEGGGTEEEECC---SCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEECCSSCCEEEE
T ss_pred             eeeecCCCceeEEec---CCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccc-eeeccCCccccceee
Confidence            455555554433222   2222223 33334233333322211           1111111100 111112223334445


Q ss_pred             eCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769          360 WDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN  437 (502)
Q Consensus       360 ~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~  437 (502)
                      ++++  .++.....++  .|.++|+...          ....+..+. ......|+|+|..++++  .++.|+++|+.++
T Consensus       199 ~~~~--~~~~~~~~~~~~~l~~~d~~g~----------~~~~lt~~~-~~~~~~~SpDG~~I~f~--~~~~l~~~d~~~g  263 (281)
T d1k32a2         199 IVGH--RIYFITDIDGFGQIYSTDLDGK----------DLRKHTSFT-DYYPRHLNTDGRRILFS--KGGSIYIFNPDTE  263 (281)
T ss_dssp             EETT--EEEEEECTTSSCEEEEEETTSC----------SCEECCCCC-SSCEEEEEESSSCEEEE--ETTEEEEECTTTC
T ss_pred             eecc--ccceecccccccceEEEeCCCC----------ceEEeecCC-CcccccCcCCCCEEEEE--eCCEEEEEECCCC
Confidence            5543  2344443333  5777777654          222333222 22334689999554443  3578999999988


Q ss_pred             Cee
Q 010769          438 QPS  440 (502)
Q Consensus       438 ~~~  440 (502)
                      +..
T Consensus       264 ~~~  266 (281)
T d1k32a2         264 KIE  266 (281)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            743

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.52  E-value=0.034  Score=51.08  Aligned_cols=282  Identities=7%  Similarity=-0.020  Sum_probs=129.6

Q ss_pred             ccccCCCceEEEEEecCC------cceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769          145 MTINPNDAVIVCARNEDD------VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME  218 (502)
Q Consensus       145 ~~~~p~~~~l~~~~~~~~------~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d  218 (502)
                      .....++++++.|+...+      ...-.+++|+...+   ..........+..-.|..-     .+.++|.+++.|+.+
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~---~w~~~~~~~~~~~~~~~~~-----~~~~~g~i~v~Gg~~   96 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG---IVSDRTVTVTKHDMFCPGI-----SMDGNGQIVVTGGND   96 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC---CBCCCEEEECSCCCSSCEE-----EECTTSCEEEECSSS
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCC---cEeecCCCCCCcccceeEE-----EEecCCcEEEeecCC
Confidence            444567888988875321      11224667776654   2111111111111122211     114789999998766


Q ss_pred             -CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC------CcE
Q 010769          219 -PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD------KQV  291 (502)
Q Consensus       219 -g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D------g~v  291 (502)
                       ..+.+||..+..-..    +                 .    .+ .....-.+.+..++ +.+++.|+..      ..+
T Consensus        97 ~~~~~~yd~~~~~w~~----~-----------------~----~~-~~~r~~~~~~~~~d-G~v~v~GG~~~~~~~~~~v  149 (387)
T d1k3ia3          97 AKKTSLYDSSSDSWIP----G-----------------P----DM-QVARGYQSSATMSD-GRVFTIGGSWSGGVFEKNG  149 (387)
T ss_dssp             TTCEEEEEGGGTEEEE----C-----------------C----CC-SSCCSSCEEEECTT-SCEEEECCCCCSSSCCCCE
T ss_pred             CcceeEecCccCcccc----c-----------------c----cc-cccccccceeeecC-Cceeeecccccccccccee
Confidence             589999976421100    0                 0    00 01111224455666 4477776542      368


Q ss_pred             EEEECCCCeeeEEec---------cCCC-----CeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee------
Q 010769          292 KIWDVAAGKCNLTLE---------HHTD-----KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV------  351 (502)
Q Consensus       292 ~vwd~~~~~~~~~~~---------~h~~-----~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------  351 (502)
                      .+||+.+.+-...-.         .+..     .-..+...+++ .+++.++..+.+.+++..+..........      
T Consensus       150 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (387)
T d1k3ia3         150 EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG-SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA  228 (387)
T ss_dssp             EEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG-CEEECCSSSEEEEEECSTTCEEEEEEECEETTEEC
T ss_pred             eeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCC-CEEEecCcCCcEEecCcccCcEeeccccccCcccC
Confidence            999998775322110         0000     00111122334 56666666666777776654322111100      


Q ss_pred             c--CCeEEEEeCCCCCCEEEEEeCC--------CeEEEEECCCCCCCCCCCCCCccEEEe---cCCCCeeEEEEcCCCCC
Q 010769          352 A--ADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPN  418 (502)
Q Consensus       352 ~--~~v~~v~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~  418 (502)
                      .  ..-.++.+......+++.|+..        ....+.++.....      ....+...   .+...-.+....+++ +
T Consensus       229 ~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~p~~r~~~~~~~~~dg-~  301 (387)
T d1k3ia3         229 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT------SPNTVFASNGLYFARTFHTSVVLPDG-S  301 (387)
T ss_dssp             CCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTS------CCEEEECTTCCSSCCBSCEEEECTTS-C
T ss_pred             cccccccEEEeeccCCceEEEEeccCCCCCcccceeeccccccccc------CCCceeeccccccccccceeeeccCC-e
Confidence            0  0112233332233355555432        1233333332210      00111111   112223345556777 7


Q ss_pred             EEEEEeCC-----------CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC
Q 010769          419 LLATGSTD-----------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS  470 (502)
Q Consensus       419 ~l~t~s~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~  470 (502)
                      ++++|+.+           .++.+||..+.+...+.........-....+.+||+ +|+.||.
T Consensus       302 i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~-v~v~GG~  363 (387)
T d1k3ia3         302 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGR-VFNGGGG  363 (387)
T ss_dssp             EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred             EEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCE-EEEEeCC
Confidence            88888743           147889988876433322211111112344679998 6888874

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=0.042  Score=47.77  Aligned_cols=199  Identities=11%  Similarity=0.137  Sum_probs=127.4

Q ss_pred             eEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-
Q 010769          271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-  349 (502)
Q Consensus       271 ~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-  349 (502)
                      +.-.+|. .++||.-+ ..++.++|+++.+.++.+.. ...|.-=.|-...  .|+-.+ +..|+-|++.....+...+ 
T Consensus        67 sAIMhP~-~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~--~L~lVT-~taVYHW~~~g~s~P~k~fd  140 (327)
T d1utca2          67 SAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFD  140 (327)
T ss_dssp             EEEECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS--EEEEEC-SSEEEEEESSSSCCCEEEEE
T ss_pred             hhhcCCC-CcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC--EEEEEc-CCceEEEcccCCCCchhhhh
Confidence            3446787 66776665 56899999999999988874 4567667777654  444443 5679999996544333232 


Q ss_pred             ee----cCCeEEEEeCCCCCCEEEEEe------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC--C
Q 010769          350 AV----AADVESLAWDPHAEHSFVVSL------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--P  417 (502)
Q Consensus       350 ~~----~~~v~~v~~~p~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--~  417 (502)
                      .+    ...|..-..+++...++++|-      -.|.+.+|....          +..+.+.+|...-..+.+..+.  .
T Consensus       141 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er----------~~sQ~ieGhaa~F~~~~~~g~~~~~  210 (327)
T d1utca2         141 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR----------KVSQPIEGHAASFAQFKMEGNAEES  210 (327)
T ss_dssp             CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT----------TEEEEECCSEEEEEEECCTTCSSCE
T ss_pred             hcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc----------CcCccccceeeeeEEEEcCCCCCCc
Confidence            22    245777788888776666652      246788999875          4556667776544444333111  1


Q ss_pred             CEEEEEe---CCCcEEEEECCCCC---e---eEEEEe----cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769          418 NLLATGS---TDKMVKLWDLSNNQ---P---SCIASR----NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG  484 (502)
Q Consensus       418 ~~l~t~s---~dg~i~vwd~~~~~---~---~~~~~~----~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~  484 (502)
                      .+++.+.   ..+.++|.++....   +   ......    ........++..++... ++..-+.-|.|++||+.++.+
T Consensus       211 ~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~  289 (327)
T d1utca2         211 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTC  289 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCE
T ss_pred             eEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccccE
Confidence            2333322   23678888886521   1   111111    12244567888888877 577788999999999999998


Q ss_pred             cc
Q 010769          485 IS  486 (502)
Q Consensus       485 ~~  486 (502)
                      +.
T Consensus       290 i~  291 (327)
T d1utca2         290 IY  291 (327)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.051  Score=47.11  Aligned_cols=161  Identities=10%  Similarity=0.029  Sum_probs=98.9

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc--EEEEeCCCCCC
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDARISTH  344 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~vwd~~~~~~  344 (502)
                      ..+.+|++..-++++..+-...+.|.+.++....+...+...-..+..++++|..+.++.+-...+.  |.-.++.....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            4578888876656555666677899999987655433344344678999999988455545433333  44345544332


Q ss_pred             ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe
Q 010769          345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      .......-.....+++++.+..++++-...+.|...++...         .....+.+. ....+|++.  +..+..|-.
T Consensus       159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---------~~~~v~~~~-~~P~~lav~--~~~lYwtd~  226 (263)
T d1npea_         159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---------GRRKVLEGL-QYPFAVTSY--GKNLYYTDW  226 (263)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---------EEEEEEECC-CSEEEEEEE--TTEEEEEET
T ss_pred             eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---------CeEEEECCC-CCcEEEEEE--CCEEEEEEC
Confidence            22111122456789998877655566567788999988754         222222222 234577776  325556655


Q ss_pred             CCCcEEEEECCCCCe
Q 010769          425 TDKMVKLWDLSNNQP  439 (502)
Q Consensus       425 ~dg~i~vwd~~~~~~  439 (502)
                      ..+.|...|..+++.
T Consensus       227 ~~~~I~~~~~~~g~~  241 (263)
T d1npea_         227 KTNSVIAMDLAISKE  241 (263)
T ss_dssp             TTTEEEEEETTTTEE
T ss_pred             CCCEEEEEECCCCcc
Confidence            678898899887763

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.23  E-value=0.0034  Score=57.87  Aligned_cols=189  Identities=8%  Similarity=0.045  Sum_probs=111.2

Q ss_pred             EEEEEecCCcEEEEECCCCeeeEEeccCC---------------------------------------CCe--EEEEEc-
Q 010769          281 ILASASADKQVKIWDVAAGKCNLTLEHHT---------------------------------------DKV--QAVAWN-  318 (502)
Q Consensus       281 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~---------------------------------------~~v--~~l~~~-  318 (502)
                      .+.||+..|.|+|+-+.+++.+..+.-.+                                       +-.  ..+++. 
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            57788999999999999887766552100                                       000  123332 


Q ss_pred             --CCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCCCC-CEEEEEeCC------------------Ce
Q 010769          319 --HHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAE-HSFVVSLED------------------GT  376 (502)
Q Consensus       319 --~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~-~~l~~~~~d------------------g~  376 (502)
                        ++|..+++.-..+++|.+.|++..+...... .....+..++..+... .++++.+..                  +.
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence              2453344445578899999998877543222 2344556566544322 245554442                  23


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCC------------------------------
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD------------------------------  426 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d------------------------------  426 (502)
                      +.++|..+.         +..+.+.. .+....+.++++| +++++.+.+                              
T Consensus       175 ~t~ID~~tm---------~V~~QV~V-~g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av  243 (459)
T d1fwxa2         175 FTAVDADKW---------EVAWQVLV-SGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  243 (459)
T ss_dssp             EEEEETTTT---------EEEEEEEE-SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             EEEEecCCc---------eEEEEeee-CCChhccccCCCC-CEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence            566777765         44444443 3456789999999 666665532                              


Q ss_pred             --------CcEEEEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769          427 --------KMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS  481 (502)
Q Consensus       427 --------g~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~  481 (502)
                              +.+.+-|.+.... ..+..+.. ......+.++|||+|+++++..+.++.|+|++.
T Consensus       244 ~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         244 AAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             HHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             hcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                    2234444443110 01111111 112346899999999999999999999999965

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.058  Score=46.84  Aligned_cols=183  Identities=11%  Similarity=0.018  Sum_probs=114.1

Q ss_pred             CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc---cceE-eecCCeEEEEeCCCC
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKW-AVAADVESLAWDPHA  364 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~-~~~~~v~~v~~~p~~  364 (502)
                      ..|+..++.+......+. ....+.+|+|++....++.+-...+.|.-.++......   .... .....+..+++.+.+
T Consensus        10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            358888988765444444 45567899999887445544445667776666532211   1111 112346678887766


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE-eCCCcEEEEECCCCCeeEEE
Q 010769          365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-STDKMVKLWDLSNNQPSCIA  443 (502)
Q Consensus       365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~-s~dg~i~vwd~~~~~~~~~~  443 (502)
                      .++.++-...+.|.+.++...         ...............+++.|..+.++.+- +..+.|.-.++.......+.
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~---------~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~  159 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  159 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             ceEEEEecCCCEEEeEecCCc---------eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence            767777677889999998754         33333444456678999998663444443 23456777777665432222


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769          444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA  483 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~  483 (502)
                        .........+++.+.+..++.+-...+.|...++....
T Consensus       160 --~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         160 --TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             --ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence              23345678999998887667766777889988886543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.075  Score=46.14  Aligned_cols=233  Identities=13%  Similarity=0.194  Sum_probs=135.1

Q ss_pred             CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769          206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA  285 (502)
Q Consensus       206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg  285 (502)
                      +|..+.||.=+ ...+.|||+++...+..                         +   .....|.--.|-.+  +.|+..
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~klks-------------------------~---~~~e~VvfWkWis~--~~L~lV  119 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKSKMKA-------------------------H---TMTDDVTFWKWISL--NTVALV  119 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTEEEEE-------------------------E---ECSSCCCEEEESSS--SEEEEE
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhhhhce-------------------------E---EcCCCcEEEEecCC--CEEEEE
Confidence            68888888766 46899999985322211                         1   13356777788765  356655


Q ss_pred             ecCCcEEEEECCCC-eeeEEeccC----CCCeEEEEEcCCCCcEEEEEE------CCCcEEEEeCCCCCCccceEeecCC
Q 010769          286 SADKQVKIWDVAAG-KCNLTLEHH----TDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKWAVAAD  354 (502)
Q Consensus       286 s~Dg~v~vwd~~~~-~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~  354 (502)
                      .. ..|.-|++... .+++.|..|    ...|..-..+++..-++++|=      -.|.+.+|......... ..+|.+.
T Consensus       120 T~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~-ieGhaa~  197 (327)
T d1utca2         120 TD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAAS  197 (327)
T ss_dssp             CS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE-ECCSEEE
T ss_pred             cC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcc-ccceeee
Confidence            54 57999999532 466666444    356777777888744444431      23677888887543221 2233322


Q ss_pred             eEEEEeC--CCCCCEEEEE---eCCCeEEEEECCCCCCCCCCCCCCccEEEe----cCCCCeeEEEEcCCCCCEEEEEeC
Q 010769          355 VESLAWD--PHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLH----AHDKAVCTISYNPLVPNLLATGST  425 (502)
Q Consensus       355 v~~v~~~--p~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~sp~~~~~l~t~s~  425 (502)
                      ...+...  +....+|+.+   ...+.+++.++.......... .+....+.    ....-..++..++.. .+++.-+.
T Consensus       198 F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f-~kk~vdi~fppea~~DFPvamqvs~ky-giiyviTK  275 (327)
T d1utca2         198 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-PKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITK  275 (327)
T ss_dssp             EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC-CCEEEECCCCTTCTTCCEEEEEEETTT-TEEEEEET
T ss_pred             eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC-cceeEEEECCccccCCcEEEEEeeccC-CEEEEEec
Confidence            2222222  1111223222   234689999987743211110 01111111    123445678888876 78888999


Q ss_pred             CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010769          426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI  476 (502)
Q Consensus       426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~v  476 (502)
                      -|.|++||+.++.  +++.-.-...+|+..+-...... +++-..+|.|..
T Consensus       276 ~G~i~lyDleTgt--~i~~nRIs~~~iF~~a~~~~~~G-i~~VNr~GqVl~  323 (327)
T d1utca2         276 YGYIHLYDLETGT--CIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLS  323 (327)
T ss_dssp             TSEEEEEETTTCC--EEEEEECCSSCEEEEEEETTTTE-EEEEETTSEEEE
T ss_pred             CcEEEEEEccccc--EEEEeecCCCceEEeccCCCCce-EEEECCCCeEEE
Confidence            9999999999998  44444444567776666655444 444567776643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.75  E-value=0.29  Score=47.48  Aligned_cols=25  Identities=16%  Similarity=0.107  Sum_probs=21.8

Q ss_pred             EEEEEeCCCcEEEEECCCCcccccc
Q 010769          464 VLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       464 llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      ++.+|+.||.++-+|.++++.+-+.
T Consensus       477 lVf~G~~dg~l~A~Da~tGe~lW~~  501 (571)
T d2ad6a1         477 LVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEE
Confidence            5777999999999999999998554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.73  E-value=0.06  Score=49.29  Aligned_cols=74  Identities=11%  Similarity=0.097  Sum_probs=46.8

Q ss_pred             cceeeEEecCCCCcEEEEEecC-CcEEEEECCCCeeeEEecc-CCCCeEEEEEcCCCCcEEEEEECC------CcEEEEe
Q 010769          267 DSVLGLAWNKEFRNILASASAD-KQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFD------RSVVMKD  338 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~D-g~v~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd  338 (502)
                      ......++.++ +.+++.|+.+ ..+.+||..+.+....-.. ....-.+++..+++ .+++.|+..      ..+.+||
T Consensus        76 ~~~~~~~~~~~-g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3          76 MFCPGISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             CSSCEEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEE
T ss_pred             cceeEEEEecC-CcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC-ceeeeccccccccccceeeeec
Confidence            33445677788 4577777655 5899999987765332111 11223456667777 777777643      3688899


Q ss_pred             CCCC
Q 010769          339 ARIS  342 (502)
Q Consensus       339 ~~~~  342 (502)
                      ..+.
T Consensus       154 ~~~~  157 (387)
T d1k3ia3         154 PSSK  157 (387)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            8764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.49  E-value=0.33  Score=46.89  Aligned_cols=58  Identities=9%  Similarity=0.131  Sum_probs=36.6

Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      |.|.-||+.+++..-......+   ..+-.++-.+. |+.+|+.||.++-+|..+++.+-+.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~Tagg-lVF~G~~dg~l~A~Da~tGe~LW~~  495 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQF  495 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS---CCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCC---CCCceeEECCC-EEEEECCCCcEEEEECCCCcEeEEE
Confidence            4577788888874322232222   11111222344 6778999999999999999998543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.42  E-value=0.37  Score=44.78  Aligned_cols=216  Identities=11%  Similarity=0.044  Sum_probs=108.4

Q ss_pred             cccceeeEEecCCCCcEEEEEecCC----cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC----------
Q 010769          265 HTDSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF----------  330 (502)
Q Consensus       265 h~~~V~~l~~~~~~~~~l~sgs~Dg----~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----------  330 (502)
                      +.-.+..++++|++..++++-+..|    +|+++|+.+++.+...- .......+.|.+++..++.+.-.          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            3344556788999776666666665    69999999998764221 11223568899999444444321          


Q ss_pred             -----CCcEEEEeCCCCCCccceE-ee---cCCeEEEEeCCCCCCEEEEEe--CCCe--EEEEECCCCCCCCCCCCCCcc
Q 010769          331 -----DRSVVMKDARISTHSGFKW-AV---AADVESLAWDPHAEHSFVVSL--EDGT--IKGFDIRTAKSDPDSTSQQSS  397 (502)
Q Consensus       331 -----dg~i~vwd~~~~~~~~~~~-~~---~~~v~~v~~~p~~~~~l~~~~--~dg~--i~i~d~~~~~~~~~~~~~~~~  397 (502)
                           ...|..+.+.+........ ..   ...+..+..++++..+++...  ..+.  +.+.++.........  ....
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~  279 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG--ILKW  279 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS--SCCC
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccc--ccce
Confidence                 1257777777654432222 11   123556777887775554433  2333  445555443211100  1111


Q ss_pred             EE-EecCCCCeeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCCeeEEE-EecCCCCCEEEEEEcCCCCcEEEEEeCCC
Q 010769          398 FT-LHAHDKAVCTISYNPLVPNLLATGST---DKMVKLWDLSNNQPSCIA-SRNPKAGAVFSVAFSEDSPFVLAIGGSKG  472 (502)
Q Consensus       398 ~~-~~~h~~~v~~l~~sp~~~~~l~t~s~---dg~i~vwd~~~~~~~~~~-~~~~~~~~v~~~~~spd~~~llasg~~dg  472 (502)
                      .. .........-+. +. +..+++....   ++.|...++......... .+..+...+..-.++..+.++++..-.++
T Consensus       280 ~~~~~~~~~~~~~~~-~~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~  357 (430)
T d1qfma1         280 VKLIDNFEGEYDYVT-NE-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (430)
T ss_dssp             EEEECSSSSCEEEEE-EE-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             eEeecccccceEEEe-cC-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCC
Confidence            12 222222222222 22 2233333322   356666676654321111 22334444544444444445555555554


Q ss_pred             --cEEEEECCCCccc
Q 010769          473 --KLEIWDTLSDAGI  485 (502)
Q Consensus       473 --~i~vwd~~~~~~~  485 (502)
                        .|+++++.++...
T Consensus       358 ~~~l~v~~~~~~~~~  372 (430)
T d1qfma1         358 KNTLQLHDLATGALL  372 (430)
T ss_dssp             EEEEEEEETTTCCEE
T ss_pred             EeEEEEEECCCCcEE
Confidence              5888988776653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.21  E-value=0.6  Score=45.09  Aligned_cols=57  Identities=5%  Similarity=-0.037  Sum_probs=36.2

Q ss_pred             CcEEEEECCCCeeeEEeccCCC---------CeEEEEEcCCC--CcEEEEEECCCcEEEEeCCCCCCc
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTD---------KVQAVAWNHHS--PQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~---------~v~~l~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~  345 (502)
                      ..+.-.|+.+|+.+..++.+..         .........++  ...++.++.+|.+.++|..+++.+
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence            4677889999998887764221         11111222223  135677888999999998877643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.21  E-value=0.27  Score=47.86  Aligned_cols=58  Identities=12%  Similarity=0.072  Sum_probs=34.9

Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      |.|.-||+.+++..-.....   .++.+-.++..+. |+..|+.||.++-+|..+++.+-+.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagg-lVF~G~~Dg~l~A~Da~TGe~LW~~  510 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER---FAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKF  510 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceEEEEeCCCCceecccCCC---CCCccceeEecCC-EEEEECCCCeEEEEECCCCcEeeEE
Confidence            45667777777632111111   1111111222355 6777999999999999999998554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.10  E-value=0.41  Score=46.33  Aligned_cols=28  Identities=14%  Similarity=0.265  Sum_probs=23.1

Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769          460 DSPFVLAIGGSKGKLEIWDTLSDAGISNR  488 (502)
Q Consensus       460 d~~~llasg~~dg~i~vwd~~~~~~~~~~  488 (502)
                      .+. +|.+|+.||.++.+|..+++.+-+.
T Consensus       487 agg-lVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         487 AGN-VVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             TTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCC-EEEEECCCCeEEEEECCCCcEeEEE
Confidence            455 6777999999999999999998553

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.93  E-value=0.53  Score=42.07  Aligned_cols=197  Identities=10%  Similarity=0.130  Sum_probs=114.3

Q ss_pred             CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcC----CC-CcEEEEEE-CC---CcEEEEeCCCCCCccceE
Q 010769          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH----HS-PQILLSGS-FD---RSVVMKDARISTHSGFKW  349 (502)
Q Consensus       279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~----~~-~~~l~s~~-~d---g~i~vwd~~~~~~~~~~~  349 (502)
                      ..+++.....+-|.+||+. |+.+..+.  .+.+..|..-.    .+ ...+++++ .+   .+|.+|.+..........
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            4466666777779999985 77777664  35666665432    11 12344444 22   357778775322211111


Q ss_pred             --------eecCCeEEEEe--CCCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769          350 --------AVAADVESLAW--DPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN  418 (502)
Q Consensus       350 --------~~~~~v~~v~~--~p~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~  418 (502)
                              .....+..+|+  ++... .++++....|.+..|.+.......  .....++.+. -...+.+|.+.+.. .
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~--v~~~lvr~f~-~~~q~EGCVvDde~-~  192 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY--ISGKKVRAFK-MNSQTEGMAADDEY-G  192 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS--EEEEEEEEEE-CSSCEEEEEEETTT-T
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc--eeeEeeeccC-CCCccceEEEeCCC-C
Confidence                    11123555555  66543 456777889999988774331100  0013334443 34678899999876 7


Q ss_pred             EEEEEeCCCcEEEEECCCC--C-eeEEEEec--CCCCCEEEEEEc--CCC-CcEEEEEeCCCcEEEEECCCC
Q 010769          419 LLATGSTDKMVKLWDLSNN--Q-PSCIASRN--PKAGAVFSVAFS--EDS-PFVLAIGGSKGKLEIWDTLSD  482 (502)
Q Consensus       419 ~l~t~s~dg~i~vwd~~~~--~-~~~~~~~~--~~~~~v~~~~~s--pd~-~~llasg~~dg~i~vwd~~~~  482 (502)
                      .|+.+-.+..|..+++...  . ...+....  ...+-+-.|+.-  +++ .|||+|.-.++++.|||..+.
T Consensus       193 ~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         193 SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            8888877766666665422  1 12232222  235567777754  333 378888888899999999774

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.22  E-value=1.5  Score=42.32  Aligned_cols=59  Identities=8%  Similarity=0.122  Sum_probs=36.4

Q ss_pred             CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769          427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF  489 (502)
Q Consensus       427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~  489 (502)
                      |.|.-+|+.+++.  +.....+ .++.+-..+..+. ++.+|+.||.++-+|..+|+.+-+.-
T Consensus       466 G~l~AiD~~TG~i--~W~~~~~-~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         466 GSLRAMDPVSGKV--VWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EEEEEECTTTCCE--EEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEcCCCCcE--EeecCCC-CCCccceeEEcCC-eEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            4566777777763  2222211 1222111223455 67779999999999999999985543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.39  Score=43.52  Aligned_cols=96  Identities=8%  Similarity=0.011  Sum_probs=62.9

Q ss_pred             ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769          268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF  347 (502)
Q Consensus       268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  347 (502)
                      .|..++|+.+   .|+.. .++.+..++...-........-..++..+.++|.   .++....++.+.++++........
T Consensus        88 ~v~~vafs~d---~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~  160 (381)
T d1xipa_          88 DVIFVCFHGD---QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQL  160 (381)
T ss_dssp             TEEEEEEETT---EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CeEEEEeeCC---EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccc
Confidence            5888999865   34443 4567888887664444444334567889999884   467777899999999987653221


Q ss_pred             -----eEeecCCeEEEEeCCCCCCEEEEE
Q 010769          348 -----KWAVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       348 -----~~~~~~~v~~v~~~p~~~~~l~~~  371 (502)
                           .+...+.+.+++|++.+. .++++
T Consensus       161 ~~~v~~~~~~~~~~~v~ws~kgk-q~v~~  188 (381)
T d1xipa_         161 AQNVTSFDVTNSQLAVLLKDRSF-QSFAW  188 (381)
T ss_dssp             EESEEEEEECSSEEEEEETTSCE-EEEEE
T ss_pred             cCCcceEEecCCceEEEEeCCcE-EEEEe
Confidence                 123346677788877544 45555

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.08  E-value=0.66  Score=41.38  Aligned_cols=144  Identities=12%  Similarity=0.077  Sum_probs=80.7

Q ss_pred             CCcEEEEeCCCCCCccceEeec-C-------CeEEEE--eCCCCCCEEEEEe---CCCeEEEEECCCCCCCCCCCCCCcc
Q 010769          331 DRSVVMKDARISTHSGFKWAVA-A-------DVESLA--WDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSS  397 (502)
Q Consensus       331 dg~i~vwd~~~~~~~~~~~~~~-~-------~v~~v~--~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~  397 (502)
                      .|.|.++|+............. .       ....+.  -.+++..+|++..   ...+|.+|++....       ....
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~-------~~l~  139 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEE-------KSLL  139 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTT-------TEEE
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCC-------CeEE
Confidence            4888999988765433222211 1       112222  2344444454442   34578888876541       1111


Q ss_pred             --EEEe-cCCCCeeEEEEcCCCCCEEEEEe--C-------------CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcC
Q 010769          398 --FTLH-AHDKAVCTISYNPLVPNLLATGS--T-------------DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE  459 (502)
Q Consensus       398 --~~~~-~h~~~v~~l~~sp~~~~~l~t~s--~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp  459 (502)
                        .++. ......+.+++..++ .+++|-.  .             -+...+|....+....+..   .....+.++++|
T Consensus       140 ~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~---~l~~pNGI~~s~  215 (340)
T d1v04a_         140 HLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE---GFDFANGINISP  215 (340)
T ss_dssp             EEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE---EESSEEEEEECT
T ss_pred             EEeecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC---CCCccceeEECC
Confidence              1111 112456788888877 7777721  1             1233444444443222221   234688999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCccc
Q 010769          460 DSPFVLAIGGSKGKLEIWDTLSDAGI  485 (502)
Q Consensus       460 d~~~llasg~~dg~i~vwd~~~~~~~  485 (502)
                      ++++++++-+..++|++|++.....+
T Consensus       216 d~~~lyVa~t~~~~i~~y~~~~~~~l  241 (340)
T d1v04a_         216 DGKYVYIAELLAHKIHVYEKHANWTL  241 (340)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CCCEEEEEeCCCCeEEEEEeCCCccc
Confidence            99988888888999999999765443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.08  E-value=1.6  Score=41.87  Aligned_cols=57  Identities=7%  Similarity=0.046  Sum_probs=35.8

Q ss_pred             CcEEEEECCCCeeeEEeccCCCCe-----------EEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc
Q 010769          289 KQVKIWDVAAGKCNLTLEHHTDKV-----------QAVAWNHHSPQILLSGSFDRSVVMKDARISTHS  345 (502)
Q Consensus       289 g~v~vwd~~~~~~~~~~~~h~~~v-----------~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  345 (502)
                      ..|.-.|+.+++.+..++.....+           ..+.........++.++.+|.+.++|..+++.+
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence            457777889998877665322111           222222222246777888999999998887653

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.76  E-value=1.3  Score=39.89  Aligned_cols=176  Identities=11%  Similarity=0.043  Sum_probs=99.4

Q ss_pred             cceeeEEecCCCCcEEEEEecCCcEEEEECCC-----------CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 010769          267 DSVLGLAWNKEFRNILASASADKQVKIWDVAA-----------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVV  335 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~-----------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  335 (502)
                      ....-|+.++.. .+|+.|+.++ ++|-.+..           .......  .-..|..++|+.+   .|+.. .++.+.
T Consensus        37 ~~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d---~l~v~-~~~~l~  108 (381)
T d1xipa_          37 ASLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD---QVLVS-TRNALY  108 (381)
T ss_dssp             SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT---EEEEE-ESSEEE
T ss_pred             cccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC---EEEEE-eCCCEE
Confidence            346678888874 4787777775 66765321           1111111  1236888999754   34443 456688


Q ss_pred             EEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCcc----EEEecCCCCeeEEE
Q 010769          336 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS----FTLHAHDKAVCTIS  411 (502)
Q Consensus       336 vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~~h~~~v~~l~  411 (502)
                      .++...............++..+.++|.   .++....+|.+.++++.....       ..+    ..+. -.+.+.+++
T Consensus       109 ~~~~~~l~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~-------~~~~~~v~~~~-~~~~~~~v~  177 (381)
T d1xipa_         109 SLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKST-------KQLAQNVTSFD-VTNSQLAVL  177 (381)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCE-------EEEEESEEEEE-ECSSEEEEE
T ss_pred             EEEeeccccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCcc-------ccccCCcceEE-ecCCceEEE
Confidence            8887765444333445677889999883   577777899999999987621       111    1111 135577788


Q ss_pred             EcCCCCCEEEEEeCCCcEEEE-ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEE
Q 010769          412 YNPLVPNLLATGSTDKMVKLW-DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL  465 (502)
Q Consensus       412 ~sp~~~~~l~t~s~dg~i~vw-d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll  465 (502)
                      |++.+ ..++++..++ ..+- ++....  .+.........|.++.|-.+..+++
T Consensus       178 ws~kg-kq~v~~~g~~-~q~k~~i~~~~--~~~~p~~~~~~v~sI~WL~~~~F~v  228 (381)
T d1xipa_         178 LKDRS-FQSFAWRNGE-MEKQFEFSLPS--ELEELPVEEYSPLSVTILSPQDFLA  228 (381)
T ss_dssp             ETTSC-EEEEEEETTE-EEEEEEECCCH--HHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             EeCCc-EEEEEeCCCc-eeeccCCCCcc--ccCCCcCCCcceeEEEEecCceEEE
Confidence            87765 6666653322 1111 111110  0000011335688899987776533

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.68  E-value=1.6  Score=40.10  Aligned_cols=253  Identities=12%  Similarity=0.094  Sum_probs=123.1

Q ss_pred             ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC--
Q 010769          141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME--  218 (502)
Q Consensus       141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d--  218 (502)
                      .+..+.++|+++++|.+-..+..-...+++++...+   .+.... .. ......+.|       .++++.|+....+  
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg---~~~~~~-i~-~~~~~~~~W-------~~D~~~~~Y~~~~~~  193 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---KELPDV-LE-RVKFSCMAW-------THDGKGMFYNAYPQQ  193 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---EEEEEE-EE-EECSCCEEE-------CTTSSEEEEEECCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcc---eecccc-cc-cccccceEE-------cCCCCEEEEEEeccc
Confidence            345678999999999887655444567777776665   332211 11 111134556       6788777654332  


Q ss_pred             --------------CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769          219 --------------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS  284 (502)
Q Consensus       219 --------------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  284 (502)
                                    ..|..|.+.+.....                       ............+..+..++++..++++
T Consensus       194 ~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-----------------------~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         194 DGKSDGTETSTNLHQKLYYHVLGTDQSED-----------------------ILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGC-----------------------EEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cCcccccccccCCcceEEEEECCCCcccc-----------------------ccccccccCCceEEeeeccCCcceeeEE
Confidence                          245555554321110                       1111111223446677788886644444


Q ss_pred             Eec--CCcEEEE--ECCCCe--------eeEEeccCCCCeEEEEEcCCCCcEEEEEEC---CCcEEEEeCCCCCCccc--
Q 010769          285 ASA--DKQVKIW--DVAAGK--------CNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DRSVVMKDARISTHSGF--  347 (502)
Q Consensus       285 gs~--Dg~v~vw--d~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~--  347 (502)
                      .+.  +....+|  ++....        ....+........-+. +..+ .+++....   ++.|...++........  
T Consensus       251 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~  328 (430)
T d1qfma1         251 IREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGT-VFTFKTNRHSPNYRLINIDFTDPEESKWKV  328 (430)
T ss_dssp             EECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETT-EEEEEECTTCTTCEEEEEETTBCCGGGCEE
T ss_pred             eeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEe-cCCc-eeecccCcccccceeEEecCCCCccccceE
Confidence            432  3334444  443221        1122222222233222 2222 34443332   46677777766543321  


Q ss_pred             eEe-ecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe
Q 010769          348 KWA-VAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       348 ~~~-~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ... +...+..-.+...+..+++....++  .|+++++..+         ..........+.|..+...+....+.++-+
T Consensus       329 vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~---------~~~~~~~~~~~sv~~~~~~~~~~~~~~~~s  399 (430)
T d1qfma1         329 LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG---------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFT  399 (430)
T ss_dssp             EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC---------CEEEEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred             EecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCC---------cEEEecCCCCceEeeccCCCCCCEEEEEEc
Confidence            222 2233433233332343444445565  4788888765         222223333445655555555534444433


Q ss_pred             C---CCcEEEEECCCCCe
Q 010769          425 T---DKMVKLWDLSNNQP  439 (502)
Q Consensus       425 ~---dg~i~vwd~~~~~~  439 (502)
                      .   =.++.-+|+.+++.
T Consensus       400 s~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         400 SFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             CSSCCCEEEEEETTSSSC
T ss_pred             CCCCCCeEEEEECCCCCc
Confidence            2   36688899988753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.26  E-value=0.42  Score=46.28  Aligned_cols=79  Identities=11%  Similarity=0.188  Sum_probs=47.9

Q ss_pred             CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC----CC
Q 010769          375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK----AG  450 (502)
Q Consensus       375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~----~~  450 (502)
                      |.|.-||+.++         +.+++.........+ ..+-.+ .++++|+.||.++.||..+++.  +.++...    ..
T Consensus       457 G~l~AiD~~tG---------k~~W~~~~~~p~~gg-~lstag-glVF~G~~dg~l~A~Da~TGe~--LW~~~~~~~~~~~  523 (573)
T d1kb0a2         457 GRLLAWDPVAQ---------KAAWSVEHVSPWNGG-TLTTAG-NVVFQGTADGRLVAYHAATGEK--LWEAPTGTGVVAA  523 (573)
T ss_dssp             EEEEEEETTTT---------EEEEEEEESSSCCCC-EEEETT-TEEEEECTTSEEEEEETTTCCE--EEEEECSSCCCSC
T ss_pred             ccEEEeCCCCC---------ceEeeecCCCCCCCc-eEEEcC-CEEEEECCCCeEEEEECCCCcE--eEEEECCCCcccc
Confidence            56888888887         666666543321111 122234 7888899999999999999994  4443322    22


Q ss_pred             CEEEEEEcCCCC-cEEEEEe
Q 010769          451 AVFSVAFSEDSP-FVLAIGG  469 (502)
Q Consensus       451 ~v~~~~~spd~~-~llasg~  469 (502)
                      +   +.|.-+|+ |+++++|
T Consensus       524 P---~ty~~~GkQYv~v~~G  540 (573)
T d1kb0a2         524 P---STYMVDGRQYVSVAVG  540 (573)
T ss_dssp             C---EEEEETTEEEEEEEEC
T ss_pred             C---EEEEECCEEEEEEEeC
Confidence            2   34445664 5444444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.84  E-value=2.9  Score=36.90  Aligned_cols=103  Identities=9%  Similarity=0.009  Sum_probs=61.7

Q ss_pred             cceeeEEecCCCCcEEEEEe--c-------------CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC
Q 010769          267 DSVLGLAWNKEFRNILASAS--A-------------DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD  331 (502)
Q Consensus       267 ~~V~~l~~~~~~~~~l~sgs--~-------------Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  331 (502)
                      ...++|.+..++ .+++|-.  .             -++..+|....++...... .-...+.|+++|++..++++-+..
T Consensus       150 ~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~  227 (340)
T d1v04a_         150 PSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAELLA  227 (340)
T ss_dssp             SSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGGG
T ss_pred             cCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeCCC
Confidence            456788888774 4666621  0             1233444444443322222 235688999999996677777888


Q ss_pred             CcEEEEeCCCCCCccc--eEeecCCeEEEEeCCCCCCEEEEE
Q 010769          332 RSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVS  371 (502)
Q Consensus       332 g~i~vwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~  371 (502)
                      +.|++|++........  .....+..-.+.+.+.+..+.+++
T Consensus       228 ~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         228 HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            9999999976543321  123455567788876544444443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.82  E-value=1.9  Score=41.44  Aligned_cols=83  Identities=16%  Similarity=0.236  Sum_probs=49.4

Q ss_pred             CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCC-E
Q 010769          374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA-V  452 (502)
Q Consensus       374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-v  452 (502)
                      .|.|.-+|+.++         +.++....+.. +.+-.++..+ .++++|+.||.++.+|..+++.  +..+....+. -
T Consensus       465 ~G~l~AiD~~TG---------~i~W~~~~~~p-~~~g~lstag-glVF~Gt~dg~l~A~Da~TGe~--LW~~~~~~~~~~  531 (582)
T d1flga_         465 VGSLRAMDPVSG---------KVVWEHKEHLP-LWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKE--LWKFQTGSGIVS  531 (582)
T ss_dssp             SEEEEEECTTTC---------CEEEEEEESSC-CCSCCEEETT-TEEEEECTTSEEEEEETTTCCE--EEEEECSSCCCS
T ss_pred             CCeEEEEcCCCC---------cEEeecCCCCC-CccceeEEcC-CeEEEeCCCCeEEEEECCCCcE--eEEEECCCCccc
Confidence            366778888876         66666654432 2221122334 6888899999999999999994  4444322111 1


Q ss_pred             EEEEEcCCCC-cEEEEEe
Q 010769          453 FSVAFSEDSP-FVLAIGG  469 (502)
Q Consensus       453 ~~~~~spd~~-~llasg~  469 (502)
                      .-+.|..+|+ |+++.+|
T Consensus       532 ~P~ty~~~G~qYv~i~ag  549 (582)
T d1flga_         532 PPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             CCEEEEETTEEEEEEEEC
T ss_pred             cCEEEEECCEEEEEEEeC
Confidence            1145666774 5444444

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=1.4  Score=37.48  Aligned_cols=63  Identities=21%  Similarity=0.419  Sum_probs=33.9

Q ss_pred             CEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCc
Q 010769          418 NLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIWDTLSDA  483 (502)
Q Consensus       418 ~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg-----~i~vwd~~~~~  483 (502)
                      .+++.|+.+     ..+..+|..+.+...+.......... +++.. +++ +++.||.++     .|.+||+.++.
T Consensus       197 ~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~-~~~-l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         197 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITVH-QGR-IYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTE-EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             eEEEecCccccccccceeeeeecceeeecccCccCcccce-EEEEE-CCE-EEEEecCCCCeecceEEEEECCCCE
Confidence            566665544     34677888776643322211111111 22222 455 677777654     37899998754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.36  E-value=6.5  Score=37.62  Aligned_cols=195  Identities=14%  Similarity=0.160  Sum_probs=106.5

Q ss_pred             EEEEecCCcEEEEEC-CCCeeeEEeccCCC-----------CeEEEEEcCCC---CcEEEEEECCCcEEEEeCCCCCCcc
Q 010769          282 LASASADKQVKIWDV-AAGKCNLTLEHHTD-----------KVQAVAWNHHS---PQILLSGSFDRSVVMKDARISTHSG  346 (502)
Q Consensus       282 l~sgs~Dg~v~vwd~-~~~~~~~~~~~h~~-----------~v~~l~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~  346 (502)
                      +++++..+.|...|. .+|+.+.++.....           .-..+++.+..   ..+++.++.|+.|.-.|.++++..-
T Consensus        66 y~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w  145 (596)
T d1w6sa_          66 YIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVW  145 (596)
T ss_dssp             EEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceec
Confidence            334444566777776 46777776632110           01234443321   2468889999999999999887653


Q ss_pred             ceEeecCCe-EEEEeCCC-CCCEEEEEeC------CCeEEEEECCCCCCCCCCCCCCccEEEecCC--------------
Q 010769          347 FKWAVAADV-ESLAWDPH-AEHSFVVSLE------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--------------  404 (502)
Q Consensus       347 ~~~~~~~~v-~~v~~~p~-~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~--------------  404 (502)
                      ......... ..+.-.|- -...++++..      .|.|+-||++++         +.++++....              
T Consensus       146 ~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG---------~~~W~~~t~~~~~~~~~~~~~~~~  216 (596)
T d1w6sa_         146 KVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTG---------EQVWRAYATGPDKDLLLASDFNIK  216 (596)
T ss_dssp             EEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTC---------CEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             cccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCC---------cEEEEeeccCCccccccccccccc
Confidence            221110000 00000110 0225666543      489999999998         5555543211              


Q ss_pred             ------------------------CCeeEEEEcCCCCCEEEEEeC----------------CCcEEEEECCCCCeeEEEE
Q 010769          405 ------------------------KAVCTISYNPLVPNLLATGST----------------DKMVKLWDLSNNQPSCIAS  444 (502)
Q Consensus       405 ------------------------~~v~~l~~sp~~~~~l~t~s~----------------dg~i~vwd~~~~~~~~~~~  444 (502)
                                              ..-..+++.+.. .+++.+..                ...|.-.|+.+++..-.+.
T Consensus       217 ~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~-~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q  295 (596)
T d1w6sa_         217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ  295 (596)
T ss_dssp             CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred             cccccccccccccCCCCceecCCCccccccccccCC-Ceeeccccccccccccccccccccccccccccccccccccccc
Confidence                                    011234555554 45544432                2347778999988544444


Q ss_pred             ecCCCC-------CEEEEE-EcCCCC--cEEEEEeCCCcEEEEECCCCcccc
Q 010769          445 RNPKAG-------AVFSVA-FSEDSP--FVLAIGGSKGKLEIWDTLSDAGIS  486 (502)
Q Consensus       445 ~~~~~~-------~v~~~~-~spd~~--~llasg~~dg~i~vwd~~~~~~~~  486 (502)
                      ...|..       ...-+. ...+++  -+++....+|.+.++|..+++.+.
T Consensus       296 ~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         296 KTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             SSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceee
Confidence            443421       111121 123332  257788899999999999999874

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.01  E-value=4.8  Score=35.54  Aligned_cols=143  Identities=8%  Similarity=0.069  Sum_probs=82.9

Q ss_pred             cEEEEECCC-CeeeEEeccC-------CCCeEEEEE--cCCCC-cEEEEEECCCcEEEEeCCCCC---C---ccceEeec
Q 010769          290 QVKIWDVAA-GKCNLTLEHH-------TDKVQAVAW--NHHSP-QILLSGSFDRSVVMKDARIST---H---SGFKWAVA  352 (502)
Q Consensus       290 ~v~vwd~~~-~~~~~~~~~h-------~~~v~~l~~--~~~~~-~~l~s~~~dg~i~vwd~~~~~---~---~~~~~~~~  352 (502)
                      +|.+|.+.. ...+..+...       ...+..+|+  ++..+ .++++....|.+..|.+....   .   ....+...
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            688887752 2233333221       123556666  66543 356777788999888774322   1   12234567


Q ss_pred             CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec--CCCCeeEEEEcC--CCCCEEEE-EeCCC
Q 010769          353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNP--LVPNLLAT-GSTDK  427 (502)
Q Consensus       353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp--~~~~~l~t-~s~dg  427 (502)
                      ..+..|.+..... .|+++-++..|..++........    ...+....+  ...-+-.|++-.  ++..+|++ .-.++
T Consensus       180 ~q~EGCVvDde~~-~LyisEE~~Giw~~~a~~~~~~~----~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n  254 (353)
T d1h6la_         180 SQTEGMAADDEYG-SLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNS  254 (353)
T ss_dssp             SCEEEEEEETTTT-EEEEEETTTEEEEEESSTTSCSC----CEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             CccceEEEeCCCC-cEEEecCccceEEEEeccCCCcc----ceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCC
Confidence            7899999998765 78888888777777665331100    111112111  345677776543  33335544 44578


Q ss_pred             cEEEEECCCC
Q 010769          428 MVKLWDLSNN  437 (502)
Q Consensus       428 ~i~vwd~~~~  437 (502)
                      +..|||....
T Consensus       255 ~f~vydr~~~  264 (353)
T d1h6la_         255 SYAIYERQGQ  264 (353)
T ss_dssp             EEEEEESSTT
T ss_pred             eEEEEecCCC
Confidence            8999998764

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=89.81  E-value=2.9  Score=38.05  Aligned_cols=156  Identities=12%  Similarity=0.088  Sum_probs=83.4

Q ss_pred             CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe-------ccCCCCeEEEEEcCCCCcEEEEEECCC----
Q 010769          264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSFDR----  332 (502)
Q Consensus       264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~~l~s~~~dg----  332 (502)
                      +-.+.|.+|+++|...+++++++..|-|..-. ..++.=..+       ......+.+|+++|.++..+..+..+.    
T Consensus         9 ~~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~   87 (427)
T d2ebsa1           9 GGGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDE   87 (427)
T ss_dssp             CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCc
Confidence            34578999999999888998888776554332 233322222       123346889999998877777665321    


Q ss_pred             cEEEEeCCCCCCccceEe----------ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec
Q 010769          333 SVVMKDARISTHSGFKWA----------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA  402 (502)
Q Consensus       333 ~i~vwd~~~~~~~~~~~~----------~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  402 (502)
                      ...||-...+...-....          .......+.++|..+..+++++.++.|.. ....+.. ...  .........
T Consensus        88 ~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~t-W~~--~~~~~~~~~  163 (427)
T d2ebsa1          88 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKT-WTN--VTSIPDAFT  163 (427)
T ss_dssp             CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSS-CEE--CTTSSCCCC
T ss_pred             CccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCce-eee--cccCccccc
Confidence            123443222211100000          11235678899988878888876665532 2222210 000  000000111


Q ss_pred             CCCCeeEEEEcCCCCCEEEEEe
Q 010769          403 HDKAVCTISYNPLVPNLLATGS  424 (502)
Q Consensus       403 h~~~v~~l~~sp~~~~~l~t~s  424 (502)
                      ....+..+.++|..+..|+.+.
T Consensus       164 ~~~~~~~i~~~p~~~~~~y~~~  185 (427)
T d2ebsa1         164 NGIGYTSVIFDPERNGTIYASA  185 (427)
T ss_dssp             SSSCEEEEEECTTSTTCEEEEE
T ss_pred             CCccceEEEecccccceeeeee
Confidence            2334778889887656555433

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=86.56  E-value=8.2  Score=34.78  Aligned_cols=158  Identities=11%  Similarity=-0.006  Sum_probs=84.0

Q ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-------ceEeecCCeEEEEeCCCCCCEEEEEeCCC----e
Q 010769          308 HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-------FKWAVAADVESLAWDPHAEHSFVVSLEDG----T  376 (502)
Q Consensus       308 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-------~~~~~~~~v~~v~~~p~~~~~l~~~~~dg----~  376 (502)
                      -.+.|.+|+++|..+.++++++..|-|..-.= .++.-.       ........+.+|+++|..+..+++++...    .
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~d-gG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~   88 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW   88 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEEEEC-CCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcC
Confidence            46789999999999899988887765543221 111100       00112335889999998777777765321    1


Q ss_pred             EEEEECCCCCCCCCCCCCCccEEEe---------cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE-EE---
Q 010769          377 IKGFDIRTAKSDPDSTSQQSSFTLH---------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-IA---  443 (502)
Q Consensus       377 i~i~d~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~-~~---  443 (502)
                      ..+|-...+        .+.-..+.         .....+..+.++|..+..|..++.++.|.. ....++.-. +.   
T Consensus        89 ~gi~~S~Dg--------G~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~~~  159 (427)
T d2ebsa1          89 AAFYVSEDR--------GQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIP  159 (427)
T ss_dssp             CEEEEESST--------TSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTTSS
T ss_pred             ccEEEeCCC--------CccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeecccCc
Confidence            233433222        11111111         112345678999987787877776655432 333332111 10   


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEE-EEeCCCcEE
Q 010769          444 SRNPKAGAVFSVAFSEDSPFVLA-IGGSKGKLE  475 (502)
Q Consensus       444 ~~~~~~~~v~~~~~spd~~~lla-sg~~dg~i~  475 (502)
                      ........+..+.++|..+..|. ++...+.|.
T Consensus       160 ~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy  192 (427)
T d2ebsa1         160 DAFTNGIGYTSVIFDPERNGTIYASATAPQGMY  192 (427)
T ss_dssp             CCCCSSSCEEEEEECTTSTTCEEEEESSTTCEE
T ss_pred             ccccCCccceEEEecccccceeeeeeeecccce
Confidence            01112234788999987654444 343333443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.18  E-value=14  Score=33.74  Aligned_cols=53  Identities=15%  Similarity=0.236  Sum_probs=36.7

Q ss_pred             CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE--------eecCCeEEEEeCCC
Q 010769          310 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLAWDPH  363 (502)
Q Consensus       310 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------~~~~~v~~v~~~p~  363 (502)
                      ...++|+|.|++ ++|++--..|.|++++..++.......        ........|+++|+
T Consensus        27 ~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            467899999999 777666557999999877655322111        11345778999985

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=84.80  E-value=9.9  Score=31.81  Aligned_cols=167  Identities=14%  Similarity=0.099  Sum_probs=81.6

Q ss_pred             cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC
Q 010769          287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH  366 (502)
Q Consensus       287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  366 (502)
                      .|+.+..|.....-...........+..+.....   ..+.. .|+.+..|.................|..++-..    
T Consensus        81 ~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~---~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~----  152 (273)
T d1jtdb_          81 KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW---ASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV----  152 (273)
T ss_dssp             ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT---EEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEECS----
T ss_pred             eeeeeeccCCCcceeeccccccccceeEEeeecc---ccccc-ccccceecccCCCCceeeeccCCceEEEEeccc----
Confidence            4899999986432111111111233444444332   22222 488899987554333222222334455554432    


Q ss_pred             EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769          367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN  446 (502)
Q Consensus       367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~  446 (502)
                      ..+....++.++.|-......         ..........|..|+...   .+.+.-. ||.|+.|=........+  ..
T Consensus       153 ~~~~~~~~g~~~~~G~~~~g~---------~~~~~~~~~~v~~Is~G~---~h~~~l~-dG~v~~WG~n~~Gql~~--~~  217 (273)
T d1jtdb_         153 YTALAVKNGGVIAWGDNYFGQ---------TTVPAEAQSGVDDVAGGI---FHSLALK-DGKVIAWGDNRYKQTTV--PT  217 (273)
T ss_dssp             SEEEEEETTEEEEEECCTTST---------TSCCGGGSSSEEEEEECS---SEEEEEE-TTEEEEEECCTTSTTCC--CG
T ss_pred             eeeeeecccceeEeecccCCc---------ccccccccCCccceeccc---eeeEEEe-cCcEEEcCCCCCCccCC--Cc
Confidence            223334578899997654311         111122345677776553   2333233 79999996543221111  11


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769          447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL  480 (502)
Q Consensus       447 ~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~  480 (502)
                      .....|..|+-....  .++.  .+|.|..|=..
T Consensus       218 ~~~~~v~~I~~G~~~--~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         218 EALSGVSAIASGEWY--SLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             GGGSSCCEEEECSSC--EEEE--ETTEEEEESTT
T ss_pred             cCCCCcEEEEeCcce--EEEE--ECCEEEEECCC
Confidence            112346666654433  3443  37899999543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=82.68  E-value=10  Score=30.47  Aligned_cols=186  Identities=9%  Similarity=0.100  Sum_probs=97.3

Q ss_pred             CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEE-cCCCCcEEEEEE-----CCCcEEEEeCCCCCCccceEeec
Q 010769          279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW-NHHSPQILLSGS-----FDRSVVMKDARISTHSGFKWAVA  352 (502)
Q Consensus       279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~  352 (502)
                      .++|+.+...|.+.++-+..++.+..-   ..+|..... ++.-..+.++-.     .-..|.+.++..+.... .....
T Consensus        26 d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~-~i~sp  101 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV  101 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEE-ECTTS
T ss_pred             CcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeee-EecCC
Confidence            458888888899999988877655432   233333221 111111111111     11234444443222111 11111


Q ss_pred             --CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-------cCCCCeeEEEEcCCCCCEEEEE
Q 010769          353 --ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNLLATG  423 (502)
Q Consensus       353 --~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~~l~t~  423 (502)
                        -.|.+++..  +.+.+++|+......+|-+..+..       +.+..+.       .....|..+.+-.-++.-+.++
T Consensus       102 k~vRI~S~~yd--dk~vvF~Gased~~~LYviegGkl-------rkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~a  172 (313)
T d2hu7a1         102 KPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGL-------RELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTS  172 (313)
T ss_dssp             CSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEE-------EEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEeeec--CceEEEecccCCceEEEEEeCCce-------eeeccCCCcceEEeccCCeEEEEeeecCCcceEEEE
Confidence              234555554  567888998888888887776531       1111111       1233455555443333445555


Q ss_pred             eC-CCcEEEEECCCCCee--------------------EEEEecCC------------------CCCEEEEEEcCCCCcE
Q 010769          424 ST-DKMVKLWDLSNNQPS--------------------CIASRNPK------------------AGAVFSVAFSEDSPFV  464 (502)
Q Consensus       424 s~-dg~i~vwd~~~~~~~--------------------~~~~~~~~------------------~~~v~~~~~spd~~~l  464 (502)
                      .. .|.+++++...+...                    ...++...                  ...|+-+.+.|+++ |
T Consensus       173 dl~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~-L  251 (313)
T d2hu7a1         173 NLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGR-L  251 (313)
T ss_dssp             ETTTEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSC-E
T ss_pred             ecccCCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCc-E
Confidence            55 677777766543210                    11122211                  12356677899998 6


Q ss_pred             EEEEeCCCcEEEEE
Q 010769          465 LAIGGSKGKLEIWD  478 (502)
Q Consensus       465 lasg~~dg~i~vwd  478 (502)
                      ++.+-.||.-++|.
T Consensus       252 ~iiakrdG~s~lF~  265 (313)
T d2hu7a1         252 AVVARREGRSAVFI  265 (313)
T ss_dssp             EEEEEETTEEEEEE
T ss_pred             EEEEecCCchheee
Confidence            77788999988886