Citrus Sinensis ID: 010774

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-
Protein Sequence
MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVHR
Secondary Structure (PSIPRED)
ccccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHccccEEEEccccHHHHHHcccccccccEEEEEEcccccHHHHHHHHcccEEEEHHHHHHcccccccccccccccEEEEEEcccccccccHHHHcHHHHHHHHHHHHHHHHHcccccccccEEEEEcHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEcccccccccccccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHccccccccEEcccccccccEEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccEEEEcccccccHHHHHHHEccccEEEEEEcHHHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHccccccccccccccEEEEEEEcccccccccEEEccHHHHHHHHHHHHHHHHccccccHccEEEEHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccEEEcccccHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
msetytvkveearpaadgkpsggpvyrciyakdgllespaglespwqffcdsakripnnqmlggrkvsdgkvgpyVWLTYQEVYDAAIRFGsamrsrgvnpgdrcgiygsncPEWIIAMEACNSqaityvplydtlgANAVEFIINHAEVSIAFVqenkipsilsclprcCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLqlgtldcelppkkktnistimytsgttgepkgvvlTNQAIVAEVLSVDQMFVVTGkvcseedtyfsflplahiYDQIIETHcihkgcsigfwrgDVRYLMEDIQElkptmfsgvprvydRIYTGIsnkissggaLSKKLFEFAYNYklgnmkkgmpqnkaapllDSLVFSKIREAFGGRLQAMlsgaaplpihVEEFlrvtsgapltqgygltescsgcfTSLADVFNmigtvgvpMTTVEARLesvpemgydalssvprgeiclrgntlfsgyykrpdlteevivdgwfhtevhr
Flexible Loop (DISEMBL)
msetytvkveearpaadgkpsggpVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIpnnqmlggrkvsdgkvGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMytsgttgepkgVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQElkptmfsgvpRVYDRIYTGISnkissggalsKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGydalssvprgeicLRGNTLFsgyykrpdlteevIVDGWFHTEVHR
Low Complexity Region (SEG)
MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVHR
Disordered region (IsUnstruct)
***********************PVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV*********ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG****KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT****
Disordered Region (DISOPRED)
***TYTV*****************VYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ***********K*TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEV**
Disordered Region (DISEMBL)
********VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV***********GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVHR
Disordered Region (DISPRO)
**ETYTVKVEEA**********GPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	501	2.2.26 [Sep-21-2011]
Q9XIA9	665	Long chain acyl-CoA synth	yes	no	0.976	0.735	0.665	0.0
Q9C7W4	665	Long chain acyl-CoA synth	no	no	0.984	0.741	0.557	1e-168
Q9T0A0	666	Long chain acyl-CoA synth	no	no	0.990	0.744	0.551	1e-165
Q9T009	666	Long chain acyl-CoA synth	no	no	0.984	0.740	0.552	1e-164
O22898	660	Long chain acyl-CoA synth	no	no	0.988	0.75	0.477	1e-137
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.872	0.624	0.398	3e-85
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.854	0.610	0.414	1e-84
Q1ZXQ4	673	Fatty acyl-CoA synthetase	yes	no	0.874	0.650	0.354	2e-77
Q55DR6	667	Fatty acyl-CoA synthetase	no	no	0.850	0.638	0.369	3e-75
P41216	699	Long-chain-fatty-acid--Co	yes	no	0.840	0.602	0.353	2e-70

>sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/491 (66%), Positives = 392/491 (79%), Gaps = 2/491 (0%)

Query: 9   VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS 68
           VEE RPA    PS GPVYRC YAKDGLL+ P  ++SPWQFF ++ K+ PN QMLG R  +
Sbjct: 11  VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query: 69  DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
           D KVGPY W+TY+E +DAAIR GSA+RSRGV+PG  CGIYG+NCPEWIIAMEAC SQ IT
Sbjct: 71  DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK 188
           YVPLYD+LG NAVEFIINHAEVS+ FVQE  + SILSC   C   LKTIVSF  VSS+QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query: 189 KEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
           +EA+   VS FSW EF  +G LD   LP K+KT+I TIMYTSGTTGEPKGV+L N AI  
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query: 248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED 307
           +VLS+D+M  VT + C   D +FS+LPLAH YDQ++E + + +G S+G+WRGD+RYLM+D
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query: 308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
           +Q LKPT+F GVPRVYD++Y GI  KIS+ G + KKLF+FAYNYKLGNM+KG  Q +A+P
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427
            LD L+F KI+EA GGR   +LSGAAPLP HVEEFLR+   + L+QGYGLTESC G FT+
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query: 428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLRGNTLFSGYYKRPDLT 486
           LA VF+M+GTVGVPM TVEARL SVPEMGYDA S+ VPRGEICLRGN++FSGY+KR DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query: 487 EEVIVDGWFHT 497
           ++V++DGWFHT
Sbjct: 491 DQVLIDGWFHT 501

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1

 Score =  590 bits (1521), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 276/495 (55%), Positives = 364/495 (73%), Gaps = 2/495 (0%)

Query: 5   YTVKVEEARPAADG-KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLG 63
           Y V+VE+ +   DG  PS GPVYR IYAKDG  E P  L S W  F  S ++ PNN MLG
Sbjct: 6   YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query: 64  GRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
            R++ DGK G YVW TY+EV++  I+ G+++R+ GV  GD+CGIYG+N PEWII+MEACN
Sbjct: 66  RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query: 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183
           +  +  VPLYDTLGA A+EFII HAEVS+AF +ENKI  +L   P+   YLK IVSF  V
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query: 184 SSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 242
           +++Q+ EAE   ++ +SW++FL+LG     ELP K+++++ TIMYTSGTTG+PKGV+LTN
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query: 243 QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVR 302
           ++I+  +  V ++     +  + +D Y S+LPLAHI+D++IE  CI++  SIGFWRGDV+
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query: 303 YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362
            L+EDI  LKPT+F  VPRV +RIYTG+  K+S GG + KKLF FA+ YK  NM+KG P 
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query: 363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS 422
            +A+P+ D +VF K++E  GG ++ +LSGAAPL  H+E FLRV + A + QGYGLTESC 
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query: 423 GCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR 482
           G F S+ +  +M+GTVG P+  V+ RLESVPEMGYDAL+S PRGEIC+RG TLFSGYYKR
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query: 483 PDLTEEVIVDGWFHT 497
            DLT+EV +DGW HT
Sbjct: 486 EDLTQEVFIDGWLHT 500

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1

 Score =  582 bits (1501), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/497 (55%), Positives = 361/497 (72%), Gaps = 1/497 (0%)

Query: 2   SETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQM 61
            + Y  +VEE +  +DG+PS GPVYR I+AKDG  +   G++S W  F  S ++ PNN M
Sbjct: 4   QKKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPM 63

Query: 62  LGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121
           LG R++ DGK G YVW TYQEVYD  ++ G+++RS GV    +CGIYG+N PEWII+MEA
Sbjct: 64  LGRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEA 123

Query: 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA 181
           CN+  +  VPLYDTLGA+AVEFII+H+EVSI FV+E KI  +    P    Y+KT+VSF 
Sbjct: 124 CNAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFG 183

Query: 182 NVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            VS  QK+EAE  G+  ++W+EFL+LG     +LP KKK++I TIMYTSGTTG+PKGV++
Sbjct: 184 GVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMI 243

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
           +N++IV  +  V ++     +  + +D Y S+LPLAHI+D++IE   I  G +IGFWRGD
Sbjct: 244 SNESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGD 303

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           V+ L+ED+ ELKPT+F  VPRV DR+Y+G+  K+S GG L K +F+ A++YK G MKKG 
Sbjct: 304 VKLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQ 363

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
              +A+PL D LVFSK+++  GG ++ +LSGAAPL  HVE FLRV +   + QGYGLTES
Sbjct: 364 SHVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTES 423

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C+G F SL D   M+GTVG P+  V+ RLESVPEM YDAL+S  RGEIC+RG TLFSGYY
Sbjct: 424 CAGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYY 483

Query: 481 KRPDLTEEVIVDGWFHT 497
           KR DLT+EV++DGW HT
Sbjct: 484 KREDLTKEVLIDGWLHT 500

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1

 Score =  578 bits (1490), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 273/494 (55%), Positives = 354/494 (71%), Gaps = 1/494 (0%)

Query: 5   YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
           +  +VE A+ A DG PS GPVYR  +A++G      G++S W  F  + ++ PNN+MLG 
Sbjct: 7   FIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRMLGR 66

Query: 65  RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           R++S+GK G YVW TY+EVYD  I+ G+++RS G+  G++CGIYG NC EWII+MEACN+
Sbjct: 67  REISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEACNA 126

Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
             +  VPLYDTLGA AVEFII+HAEVSIAFV+E KIP +    P    Y+KT+VSF  V 
Sbjct: 127 HGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGGVK 186

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             QK+EAE+LG+   SW+EFL+LG     ELP KK ++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 PEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMISNE 246

Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
           +IV     V           SE+D Y S+LPLAH++D+ IE   I  G SIGFWRGDV+ 
Sbjct: 247 SIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDVKL 306

Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
           L+ED+ ELKP++F  VPRV DR+YTG+  K+S GG   KK+F+ A++YK GNMKKG    
Sbjct: 307 LIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQSHV 366

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
            A+P  D LVF+K+++  GG ++ +LSGAAPL  H+E FLRV +   + QGYGLTESC+G
Sbjct: 367 AASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESCAG 426

Query: 424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
            F +  D  +M+GTVG P+  V+ RLESVPEM YDAL S PRGEIC+RG TLFSGYYKR 
Sbjct: 427 TFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYKRE 486

Query: 484 DLTEEVIVDGWFHT 497
           DLT+EV +DGW HT
Sbjct: 487 DLTKEVFIDGWLHT 500

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  490 bits (1261), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/496 (47%), Positives = 319/496 (64%), Gaps = 1/496 (0%)

Query: 3   ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
           +++  KVEE     DGKPS GPVYR + ++ G     + + + W  F  S ++ P+N ML
Sbjct: 2   KSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNML 61

Query: 63  GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           G R++ D KVGPY+W TY+EVY+  ++ GSA+R+ G  PG R GIYG NCP+WIIAMEAC
Sbjct: 62  GWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEAC 121

Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
            +  +  VPLYDTLG+ AV++I+ HAE+   FVQ+ KI  +L    +C   LK IVSF N
Sbjct: 122 AAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTN 181

Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLT 241
           VS     +A E+GV  +SW +FL +G    E   P K  NI TIMYTSGT+G+PKGVVLT
Sbjct: 182 VSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLT 241

Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
           +QA+   V+ +D          + +D Y SFLPLAHI D++ E +   KG S+G++ G++
Sbjct: 242 HQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNL 301

Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
             L +DIQELKPT  +GVPRV++RI+ GI   +       + +F   Y +KL  + +G  
Sbjct: 302 NVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGYS 361

Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC 421
            +KA+P+ D + F KIR+  GGR++ ++SG APL   +EEFLRVT    + QGYGLTE+ 
Sbjct: 362 HSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTETL 421

Query: 422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
            G      D   M+GTVG+P    E RLE V EMGYD L   P GEIC+RG  +FSGYYK
Sbjct: 422 GGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYYK 481

Query: 482 RPDLTEEVIVDGWFHT 497
            P+LTEEV+ DGWFHT
Sbjct: 482 NPELTEEVMKDGWFHT 497

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  316 bits (809), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 181/454 (39%), Positives = 256/454 (56%), Gaps = 17/454 (3%)

Query: 49  FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
           F  + +    N+ LG R  SDG +G Y W+TY E        GS +   GVN GD  G+Y
Sbjct: 90  FVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDCVGLY 149

Query: 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
             N PEW++   AC + +   VPLYDTLG +AV+F++NHA +   F     +  +LS L 
Sbjct: 150 FINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTLNILLSFLA 209

Query: 169 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMY 227
                ++ IV                GV+  S+++ L  G        P K  +I+TI Y
Sbjct: 210 EIP-SIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKPEDIATICY 268

Query: 228 TSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
           TSGTTG PKGVVLT+  ++A V   SV+  F  +       D Y S+LPLAHIY++  + 
Sbjct: 269 TSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-------DVYISYLPLAHIYERANQI 321

Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
             ++ G ++GF++GDV  LM+D   L+PT+F  VPR+Y+RIY GI++ + S G + K+LF
Sbjct: 322 MGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGVVKKRLF 381

Query: 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
           E AYN K   +  G      +   D LVF+KI+E  GGR++ M SGA+PL   V +FLR+
Sbjct: 382 EIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDVMDFLRI 438

Query: 406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VP 464
             G  + +GYG+TE+ S   +++ D  N+ G VG P    E +L  VPEM Y +     P
Sbjct: 439 CFGCSVREGYGMTET-SCVISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTSDDQPYP 497

Query: 465 RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
           RGEIC+RG  +F GYYK  + T E++  DGW HT
Sbjct: 498 RGEICVRGPIIFKGYYKDEEQTREILDGDGWLHT 531

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  313 bits (803), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 183/441 (41%), Positives = 251/441 (56%), Gaps = 13/441 (2%)

Query: 60  QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
           + LG R   DG VG Y W+TY E   A    GS +   G+  G   GIY  N PEW+I  
Sbjct: 101 KYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIPMGSSVGIYFINRPEWLIVD 160

Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
            AC+S +   VPLYDTLG +AV+FI+NHA V   F     + S+LSCL         +V 
Sbjct: 161 HACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETLNSLLSCLSEMPSVRLVVVV 220

Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGV 238
              + S     +   GV   S+   L  G  + +   P K  +++TI YTSGTTG PKGV
Sbjct: 221 GGLIESLPSLPSSS-GVKVVSYSVLLNQGRSNPQRFFPPKPDDVATICYTSGTTGTPKGV 279

Query: 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298
           VLT+  ++A V                 D Y S+LPLAHIY++  +   ++ G ++GF++
Sbjct: 280 VLTHANLIANVAGSSFS-----VKFFSSDVYISYLPLAHIYERANQILTVYFGVAVGFYQ 334

Query: 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
           GD   L++D+  L+PT+FS VPR+Y+RIY GI N + + G L ++LF  AYN K   +  
Sbjct: 335 GDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERLFNAAYNAKKQALLN 394

Query: 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT 418
           G     A+P+ D LVF+KI++  GGR++ M SGA+PL   V EFL+V  G  +T+GYG+T
Sbjct: 395 G---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVMEFLKVCFGGRVTEGYGMT 451

Query: 419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLFS 477
           E+ S   + + +  N+ G VG P    E +L  VPEM Y  A    PRGEIC+RG  +F+
Sbjct: 452 ET-SCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQPHPRGEICVRGPIIFT 510

Query: 478 GYYKRPDLTEEVI-VDGWFHT 497
           GYYK    T+EVI  DGW HT
Sbjct: 511 GYYKDEIQTKEVIDEDGWLHT 531

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1

 Score =  290 bits (741), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/451 (35%), Positives = 250/451 (55%), Gaps = 13/451 (2%)

Query: 52  SAKRIPNNQMLGGRKV-SDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110
           S K+    +  G RK  S+G +G + W++Y    +        +   G+ P  + GI+  
Sbjct: 72  SCKKYGERKCFGERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSK 131

Query: 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC 170
           N  EW+I   A   Q+   V  Y+TLG  ++ ++  HAE+ +AF     +   L  + + 
Sbjct: 132 NRLEWLIVHSASFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLD-IAKG 190

Query: 171 CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT----LDCELPPKKKTNISTIM 226
              LKTI+ F ++       A+ELGV+ ++++E ++ G          PP   T +STIM
Sbjct: 191 VKVLKTIICFDSIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDT-LSTIM 249

Query: 227 YTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH 286
           YTSGTTG PKGV++T++ + + V +V     V      + D ++S+LP AH+ ++++   
Sbjct: 250 YTSGTTGPPKGVMITHKNLTSVVCAVSDFIKVY-----DTDVHYSYLPYAHVLERVVILA 304

Query: 287 CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE 346
             H G +IG + GD+  ++ +++ L PT+F GVPRV++RI T +  +IS   AL + LF 
Sbjct: 305 AFHFGAAIGIFSGDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFN 364

Query: 347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT 406
            AYN K  +++ G        +LD + FSKI++A GG+++ +LSG+APL    E FLRV 
Sbjct: 365 GAYNLKYLSIQHGFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVV 424

Query: 407 SGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG 466
               + QGYG +E C G      D    +GT+G P  + E +L  VPE+GYD+   V  G
Sbjct: 425 MCCCVLQGYGASEGCGGDACKRLDD-ESVGTIGPPFASNEIKLVDVPELGYDSNGEVQTG 483

Query: 467 EICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
           E+CLRG ++ SGYYK  + T E   DGWFHT
Sbjct: 484 EVCLRGPSISSGYYKDEEKTREEFKDGWFHT 514

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  282 bits (722), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 165/447 (36%), Positives = 262/447 (58%), Gaps = 21/447 (4%)

Query: 58  NNQMLGGRKV-SDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116
           ++  LG R++ +DGK G Y W++Y++    A   GSA+   G+N GDR GI+  N PEW+
Sbjct: 67  DSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWV 126

Query: 117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT 176
           ++  A  + ++  V LY TLGANA+E+++NH+E+S+   +   +  ILS +P     +KT
Sbjct: 127 LSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILS-MPGTT--IKT 183

Query: 177 IVSFANV-SSSQKKEAEELGVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTT 232
           IVS+  +  ++  K  +   V  +   +F +LG  +    E+P  +  ++ T++YTSG+T
Sbjct: 184 IVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPE--DLCTLLYTSGST 241

Query: 233 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC 292
           G PKGV+LT+  +V+EV   +  F   G +   ED + S+LPLAH +++ + +   + G 
Sbjct: 242 GNPKGVMLTHTNMVSEVAGAN--FSPAGVI--PEDVHMSYLPLAHSFERAVVSLMCYVGG 297

Query: 293 SIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK 352
            IGF+ G +  L  DIQ L+PT   G PRV+ R++  +   +++   L K LF +  N K
Sbjct: 298 QIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSK 357

Query: 353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT 412
              ++ G       P+ D LVFSK ++  GGR++ +LSG+APL   + EFLR     P+ 
Sbjct: 358 QSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCPVV 413

Query: 413 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLR 471
            GYGL+E+  G   +  +  N +G VG P++  E +L  VPEM Y +     PRGE+C+R
Sbjct: 414 SGYGLSENVGGASVAYPED-NNVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRGEVCIR 472

Query: 472 GNTLFSGYYKRPDLT-EEVIVDGWFHT 497
           G  +F GY+K P+ T E++  DGWFHT
Sbjct: 473 GFNVFKGYFKDPEKTKEDLKEDGWFHT 499

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2

 Score =  267 bits (682), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 253/453 (55%), Gaps = 32/453 (7%)

Query: 58  NNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR--CGIYGSNCPEW 115
           N   LG RK +     PY W++Y+EV + A   GS +  +G  P      G++  N PEW
Sbjct: 106 NGPCLGSRKPNQ----PYEWISYKEVAELAECIGSGLIQKGFKPCSEQFIGLFSQNRPEW 161

Query: 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL-----SCLPRC 170
           +I  + C S ++  VPLYDTLGA+A+ +I+N AE+S+ F  + +   +L     + L  C
Sbjct: 162 VIVEQGCFSYSMVVVPLYDTLGADAITYIVNKAELSVIFADKPEKAKLLLEGVENKLTPC 221

Query: 171 CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTS 229
              LK IV   +  S   +  ++ GV   S +    LG ++   P P +  +++ I +TS
Sbjct: 222 ---LKIIVIMDSYGSDLVERGKKCGVEIISLKALEDLGRVNRVKPKPPEPEDLAIICFTS 278

Query: 230 GTTGEPKGVVLTNQAIVAE----VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
           GTTG PKG ++T+Q I+ +    + + +  F+      S +D   SFLPLAH+++ ++E 
Sbjct: 279 GTTGNPKGAMITHQNIINDCSGFIKATESAFI-----ASTDDVLISFLPLAHMFETVVEC 333

Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
             +  G  IGF++GD+R LM+D++ L+PT+F  VPR+ +R++  I  + ++  +L + L 
Sbjct: 334 VMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQANT--SLKRWLL 391

Query: 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
           +FA   K   ++ G+ +N +  L D L+F KI+ + GG+++ M++GAAP+   V  FLR 
Sbjct: 392 DFASKRKEAELRSGIVRNNS--LWDKLIFHKIQSSLGGKVRLMITGAAPVSATVLTFLRT 449

Query: 406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR 465
             G    +GYG TE  +GC  SL   +   G VG PM     +L  V EM Y  L+S   
Sbjct: 450 ALGCQFYEGYGQTECTAGCCLSLPGDWTA-GHVGAPMPCNYVKLVDVEEMNY--LASKGE 506

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
           GE+C++G  +F GY K P  T E +  DGW HT
Sbjct: 507 GEVCVKGANVFKGYLKDPARTAEALDKDGWLHT 539

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	501
224103487	658	predicted protein [Populus trichocarpa]	0.984	0.749	0.780	0.0
449455210	661	PREDICTED: long chain acyl-CoA synthetas	0.992	0.751	0.763	0.0
449474962	661	PREDICTED: long chain acyl-CoA synthetas	0.992	0.751	0.759	0.0
356544492	656	PREDICTED: long chain acyl-CoA synthetas	0.990	0.756	0.746	0.0
225428594	659	PREDICTED: long chain acyl-CoA synthetas	0.984	0.748	0.748	0.0
255556171	660	acyl CoA synthetase, putative [Ricinus c	0.988	0.75	0.753	0.0
356523415	660	PREDICTED: long chain acyl-CoA synthetas	0.992	0.753	0.740	0.0
356541119	656	PREDICTED: long chain acyl-CoA synthetas	0.990	0.756	0.742	0.0
356575070	660	PREDICTED: long chain acyl-CoA synthetas	0.992	0.753	0.738	0.0
115485907	661	Os11g0558300 [Oryza sativa Japonica Grou	0.992	0.751	0.684	0.0

>gi|224103487|ref|XP_002313075.1| predicted protein [Populus trichocarpa] gi|222849483|gb|EEE87030.1| predicted protein [Populus trichocarpa]

 Score =  824 bits (2129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/493 (78%), Positives = 439/493 (89%)

Query: 5   YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
           + VKVEE+RPA+DGKPS GPVYR IYAKDGL++ PAGLESPWQFF DSA + P N+MLG 
Sbjct: 3   FIVKVEESRPASDGKPSAGPVYRSIYAKDGLMDLPAGLESPWQFFSDSALKNPENKMLGR 62

Query: 65  RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           R+V D KVGPYVWLTY+EVYD+A+R GSAMR RGVNPGDRCGIYGSNCPEWI AMEAC+S
Sbjct: 63  RQVIDSKVGPYVWLTYKEVYDSAMRMGSAMRRRGVNPGDRCGIYGSNCPEWITAMEACDS 122

Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
           QAITYVPLYDTLG NAVEFIINHAEVSIAFVQENK+ SILSCLP+C   LKTIVSF  +S
Sbjct: 123 QAITYVPLYDTLGPNAVEFIINHAEVSIAFVQENKLSSILSCLPKCSSNLKTIVSFGKIS 182

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
             QKKEA+ELGVSCFSWEEF QLG+LDCELPPK KT++ TIMYTSGTTGEPKGV+LTN A
Sbjct: 183 DMQKKEADELGVSCFSWEEFPQLGSLDCELPPKHKTDVCTIMYTSGTTGEPKGVILTNGA 242

Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYL 304
           +VAEVLSVDQ+  +T +V +EED+YFSFLPLAH+YDQ+IET+CI+KG SIGFW+GDVRYL
Sbjct: 243 LVAEVLSVDQLLFLTDRVAAEEDSYFSFLPLAHVYDQVIETYCIYKGASIGFWQGDVRYL 302

Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
           MEDIQELKP++F GVPRVYDRIYTG   K+S+GG L KKLF+FAYNYKLG ++KG PQ K
Sbjct: 303 MEDIQELKPSIFCGVPRVYDRIYTGTLAKVSAGGGLKKKLFDFAYNYKLGYLEKGFPQEK 362

Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 424
           AAPLLD LVF K ++A GGR++ +LSGAAPLP HVEEFLRVTS + L+QGYGLTESC GC
Sbjct: 363 AAPLLDRLVFDKTKQALGGRVRILLSGAAPLPKHVEEFLRVTSCSTLSQGYGLTESCGGC 422

Query: 425 FTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
           FTS+ +V+ M+GTVGVPMTT+E+RLESVPEMGYDALSSVPRGEICLRG+TLFSGY+KR D
Sbjct: 423 FTSIGNVYPMVGTVGVPMTTIESRLESVPEMGYDALSSVPRGEICLRGSTLFSGYHKRED 482

Query: 485 LTEEVIVDGWFHT 497
           LT EV+VDGWFHT
Sbjct: 483 LTNEVLVDGWFHT 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455210|ref|XP_004145346.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus]

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/498 (76%), Positives = 434/498 (87%), Gaps = 1/498 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           MS +YTV VE   P + G+PS GPVYR IYAKDGLL+ P  L+SPWQFF DS KR P N 
Sbjct: 1   MSTSYTVVVEADTPQSGGRPSAGPVYRSIYAKDGLLQLPDELQSPWQFFSDSVKRNPGNP 60

Query: 61  MLGGRKVS-DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
           MLG R+ + D K G YVWLTYQE YDAAIR GSA+R RGVN GDRCGIYGSNCPEWII+M
Sbjct: 61  MLGRRQTNGDSKAGSYVWLTYQEAYDAAIRMGSAIRKRGVNSGDRCGIYGSNCPEWIISM 120

Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
           EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK+ SI SCLPRC   LKTIVS
Sbjct: 121 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKLASIFSCLPRCSNQLKTIVS 180

Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
           F NVSS  KKEAEELGVSCFSWEEF QLG+LDCELP K+KT+I TIMYTSGTTGEPKGV+
Sbjct: 181 FTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCELPSKQKTDICTIMYTSGTTGEPKGVI 240

Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
           L N A++AEVLSV+ + ++T KV +EED+YFSFLPLAH+YDQI+ET+CI+KG SIGFWRG
Sbjct: 241 LNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFLPLAHVYDQIMETYCIYKGSSIGFWRG 300

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
           D+R+L++DIQELKPT+FSGVPRVYDRIY+GI NK+SSGG+L K LF++AY YKLG +KKG
Sbjct: 301 DIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNKVSSGGSLRKMLFDYAYIYKLGYLKKG 360

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE 419
           + Q KAAPLLD LVF KI+EAFGGR++  LSGAAPLP HVEEFLRVTS A L+QGYGLTE
Sbjct: 361 LLQEKAAPLLDKLVFDKIKEAFGGRVRLFLSGAAPLPRHVEEFLRVTSCATLSQGYGLTE 420

Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY 479
           SC GCFTS+A+VF M+GTVGVP+TT+EARLESVP+MGYDAL++ PRGEICLRG+TLFSGY
Sbjct: 421 SCGGCFTSIANVFTMMGTVGVPVTTIEARLESVPDMGYDALATTPRGEICLRGSTLFSGY 480

Query: 480 YKRPDLTEEVIVDGWFHT 497
           +KR DLT EV++DGWFHT
Sbjct: 481 HKRQDLTGEVLIDGWFHT 498

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449474962|ref|XP_004154333.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus]

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/498 (75%), Positives = 432/498 (86%), Gaps = 1/498 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           MS +YTV VE   P + G+PS GPVYR IYAKDGLL+ P  L+SPWQFF DS KR P N 
Sbjct: 1   MSTSYTVVVEADTPQSGGRPSAGPVYRSIYAKDGLLQLPDELQSPWQFFSDSVKRNPGNP 60

Query: 61  MLGGRKVS-DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
           MLG R+ + D KV    WLTYQE YDAAIR GSA+R RGVN GDRCGIYGSNCPEWII+M
Sbjct: 61  MLGRRQTNGDSKVAAIRWLTYQEAYDAAIRMGSAIRKRGVNSGDRCGIYGSNCPEWIISM 120

Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
           EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK+ SI SCLPRC   LKTIVS
Sbjct: 121 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKLASIFSCLPRCSNQLKTIVS 180

Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
           F NVSS  KKEAEELGVSCFSWEEF QLG+LDCELP K+KT+I TIMYTSGTTGEPKGV+
Sbjct: 181 FTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCELPSKQKTDICTIMYTSGTTGEPKGVI 240

Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
           L N A++AEVLSV+ + ++T KV +EED+YFSFLPLAH+YDQI+ET+CI+KG SIGFWRG
Sbjct: 241 LNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFLPLAHVYDQIMETYCIYKGSSIGFWRG 300

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
           D+R+L++DIQELKPT+FSGVPRVYDRIY+GI NK+SSGG+L K LF++AY YKLG +KKG
Sbjct: 301 DIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNKVSSGGSLRKMLFDYAYIYKLGYLKKG 360

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE 419
           + Q KAAPLLD LVF KI+EAFGGR++  LSGAAPLP HVEEFLRVTS A L+QGYGLTE
Sbjct: 361 LLQEKAAPLLDKLVFDKIKEAFGGRVRLFLSGAAPLPRHVEEFLRVTSCATLSQGYGLTE 420

Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY 479
           SC GCFTS+A+VF M+GTVGVP+TT+EARLESVP+MGYDAL++ PRGEICLRG+TLFSGY
Sbjct: 421 SCGGCFTSIANVFTMMGTVGVPVTTIEARLESVPDMGYDALATTPRGEICLRGSTLFSGY 480

Query: 480 YKRPDLTEEVIVDGWFHT 497
           +KR DLT EV++DGWFHT
Sbjct: 481 HKRQDLTGEVLIDGWFHT 498

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544492|ref|XP_003540684.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/497 (74%), Positives = 429/497 (86%), Gaps = 1/497 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M E YTVKVEEARPA   KPS GPVYRCIYAKD L   P+  ESPW+FF D+  R P+N 
Sbjct: 1   MPEVYTVKVEEARPATHEKPSAGPVYRCIYAKDALTVLPSHFESPWEFFRDTTTRCPSNP 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+ SD KVGPY W+TYQE YDAAIR GSAMRSR VNPGDRCGIYGSNCPEWIIAME
Sbjct: 61  MLGRRQKSDSKVGPYEWITYQEAYDAAIRMGSAMRSRDVNPGDRCGIYGSNCPEWIIAME 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNS A+TYVPLYDTLG NAVEFIINHAEVSIAFVQ+NK PS+LSCL RC   LKT+VSF
Sbjct: 121 ACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDNKFPSVLSCLDRCS-SLKTVVSF 179

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            NVS++QKKEAEELG SCFSWEEFLQLG +D +LP K KTNI TIMYTSGTTGEPKGV++
Sbjct: 180 GNVSTTQKKEAEELGASCFSWEEFLQLGNMDLDLPLKNKTNICTIMYTSGTTGEPKGVII 239

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
            N+A + +VLS+DQ+  +T +V +E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 240 KNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 299

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           VR+LMEDIQ LKPT+F  VPRVYDR+Y GIS+KISSGGAL   LF++AYNYKLG ++KG+
Sbjct: 300 VRFLMEDIQALKPTLFCAVPRVYDRVYAGISSKISSGGALQSTLFQYAYNYKLGYLEKGL 359

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           PQ+KAAPL D LVF KI++A GGR++ +LSGAAPLP HVEEFLRVT GA ++QGYGLTES
Sbjct: 360 PQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAAPLPRHVEEFLRVTFGATMSQGYGLTES 419

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C GCFT++++VF+M+GT+GVPMTT+E+RLESVPEMGYDALSS  RGEICLRGNTLFSGY+
Sbjct: 420 CGGCFTAISNVFSMMGTIGVPMTTIESRLESVPEMGYDALSSEARGEICLRGNTLFSGYH 479

Query: 481 KRPDLTEEVIVDGWFHT 497
           K  DLTEEV+VDGWFHT
Sbjct: 480 KHQDLTEEVMVDGWFHT 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428594|ref|XP_002281151.1| PREDICTED: long chain acyl-CoA synthetase 2 [Vitis vinifera] gi|297741400|emb|CBI32531.3| unnamed protein product [Vitis vinifera]

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/493 (74%), Positives = 431/493 (87%)

Query: 5   YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
           YTVKV ++ PA + +PS GPVYRCIYA++GLLE P G+ESPW+FF DS +R P NQMLG 
Sbjct: 4   YTVKVADSIPATEERPSAGPVYRCIYAENGLLEVPKGMESPWEFFSDSVERNPKNQMLGR 63

Query: 65  RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           R++ + K GPYVWLTY+E YDAA+R GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS
Sbjct: 64  RQIINSKAGPYVWLTYREAYDAALRMGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 123

Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
           QAI YVPLYD+LGANAVEFIINHAEVSIAFVQE+KIP++L+CLP+C  YLKTI+SF  +S
Sbjct: 124 QAIPYVPLYDSLGANAVEFIINHAEVSIAFVQESKIPAMLTCLPKCTSYLKTIISFGKIS 183

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
           SSQK+EAEELGVSCFSWEEF  LG+LDCELPPK+KT+I TIMYTSGTTGEPKGVVL+N+A
Sbjct: 184 SSQKEEAEELGVSCFSWEEFALLGSLDCELPPKQKTDICTIMYTSGTTGEPKGVVLSNEA 243

Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYL 304
           I+AEVLS DQ+ + T KV +EEDTYFSFLPLAH++DQI+ET+CI+KG SIGFW  DVRYL
Sbjct: 244 IMAEVLSTDQLLLETDKVATEEDTYFSFLPLAHVFDQIMETYCIYKGSSIGFWGADVRYL 303

Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
           MEDIQELKPT+F GVPRVY+RIY G   KISSGGAL K LF++AYNYKL N++KG+ Q++
Sbjct: 304 MEDIQELKPTIFCGVPRVYERIYGGAIAKISSGGALRKALFQYAYNYKLRNLEKGLRQDE 363

Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 424
           AAP LD L+F KI++ FGGR++ + SGAAPL  HVEEFLRVTS + L+QGYGLTESC GC
Sbjct: 364 AAPRLDRLIFDKIKQGFGGRVRLLFSGAAPLSRHVEEFLRVTSCSVLSQGYGLTESCGGC 423

Query: 425 FTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
            TS+ + F+M+GTVGVP  T+EARLESVPEMGYDALS+VPRGEICLRG TLFSGY+KR D
Sbjct: 424 LTSIVNEFSMMGTVGVPYPTIEARLESVPEMGYDALSNVPRGEICLRGKTLFSGYFKRQD 483

Query: 485 LTEEVIVDGWFHT 497
           LTE  +VDGWFHT
Sbjct: 484 LTESALVDGWFHT 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556171|ref|XP_002519120.1| acyl CoA synthetase, putative [Ricinus communis] gi|223541783|gb|EEF43331.1| acyl CoA synthetase, putative [Ricinus communis]

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/499 (75%), Positives = 431/499 (86%), Gaps = 4/499 (0%)

Query: 1   MSETYTVKVEEARPAA-DGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNN 59
           MS  Y VKVEE+RPAA DGKPS GPV+R IYAKDGLLE  A L+SPWQF  DSA + PNN
Sbjct: 1   MSMEYLVKVEESRPAASDGKPSAGPVFRSIYAKDGLLEVSAELDSPWQFLSDSALKNPNN 60

Query: 60  QMLGGRKVSDGKV-GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118
           +MLG R V+D KV GPYVWLTY+EVY+ AIR GSAMRSRG+NPGDRCGIYGSNCPEWI A
Sbjct: 61  RMLGRRLVTDSKVAGPYVWLTYKEVYETAIRIGSAMRSRGLNPGDRCGIYGSNCPEWITA 120

Query: 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIV 178
           MEAC S AIT+VPLYDTLG NAVEFI+NHAEVS+AFVQE+K+ SIL+CLP+C  YLK+  
Sbjct: 121 MEACKSHAITFVPLYDTLGPNAVEFIVNHAEVSLAFVQESKLSSILACLPKCSSYLKS-- 178

Query: 179 SFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
           +F +VS+ QKKEAEELG SCFSWEEF QLG+LDCELP K K +I TIMYTSGTTGEPKGV
Sbjct: 179 NFGSVSAMQKKEAEELGASCFSWEEFCQLGSLDCELPAKHKGDICTIMYTSGTTGEPKGV 238

Query: 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298
           +LTN AI+AEVLSVD +  +T +  +EED+YFSFLPLAH+YDQ+IET+CI KG SIGFWR
Sbjct: 239 LLTNGAIMAEVLSVDHLLFLTDRAATEEDSYFSFLPLAHVYDQVIETYCIQKGASIGFWR 298

Query: 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
           GDVR+L+ED Q LKP++F GVPRVYDRIYTG   KISSGGAL KKLF+FAY+YKLGN++K
Sbjct: 299 GDVRFLLEDAQALKPSIFCGVPRVYDRIYTGTMQKISSGGALRKKLFDFAYSYKLGNLQK 358

Query: 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT 418
           G+PQ +AAPLLD LVF K ++  GGR++ MLSGAAPLP HVEEFLRVTS + L+QGYGLT
Sbjct: 359 GLPQAQAAPLLDRLVFEKTKQTLGGRVRIMLSGAAPLPKHVEEFLRVTSCSTLSQGYGLT 418

Query: 419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG 478
           ESC GC TS+ DVF M+GTVGVPMTT+E RLESVPEMGYDALSSVPRGEICLRGNTLFSG
Sbjct: 419 ESCGGCLTSIGDVFPMVGTVGVPMTTIEVRLESVPEMGYDALSSVPRGEICLRGNTLFSG 478

Query: 479 YYKRPDLTEEVIVDGWFHT 497
           Y+KR DLT+EV++DGWFHT
Sbjct: 479 YHKREDLTKEVLIDGWFHT 497

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523415|ref|XP_003530335.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/497 (74%), Positives = 427/497 (85%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M E YTVKVEE RPA D KPS GPVYR IYAKDGLLE P+  ESPW FF DS KR PNN+
Sbjct: 1   MPEVYTVKVEEGRPATDAKPSAGPVYRSIYAKDGLLEVPSDFESPWDFFRDSVKRNPNNK 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+ ++ KVG Y WLTYQ+VYDAA++ GSAMRSRGVNPGDRCGIYGSNCPEWII ME
Sbjct: 61  MLGRRQKTESKVGSYTWLTYQDVYDAALKMGSAMRSRGVNPGDRCGIYGSNCPEWIIVME 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNS A +YVPLYDTLG NAVEFIINHAEVSIAFVQE KIPSILSCL +C   LKTIVSF
Sbjct: 121 ACNSCAASYVPLYDTLGPNAVEFIINHAEVSIAFVQEKKIPSILSCLAQCSSNLKTIVSF 180

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            +VS++QKKEAEE G SCFSW EFLQLG LD +LP KKK +I TIMYTSGTTG+PKGVV+
Sbjct: 181 GSVSTTQKKEAEEHGASCFSWGEFLQLGCLDWDLPSKKKNDICTIMYTSGTTGDPKGVVI 240

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
            N+A +AEVLSVD + ++T +V  E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 241 KNEAFMAEVLSVDHIIMLTDRVVGEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 300

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           VR+L+ED+Q LKPT+F GVPRV+DRIY GI +K+SS G L   LF+ AYNYKL +++KG+
Sbjct: 301 VRFLLEDVQALKPTIFCGVPRVFDRIYAGIKSKVSSAGGLQSTLFQCAYNYKLKSLEKGL 360

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           PQ+KAAPL D LVF K + A GGR++ +LSGAAPLP HVEEF+RVTSG+ L+QGYGLTES
Sbjct: 361 PQHKAAPLFDRLVFDKTKLALGGRVRILLSGAAPLPRHVEEFMRVTSGSTLSQGYGLTES 420

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C+GCFT++ DV++M GTVGVPMTT+EARLESVPEMGYDALS+VPRGEICLRGNTLFSGY+
Sbjct: 421 CAGCFTAIGDVYSMTGTVGVPMTTIEARLESVPEMGYDALSNVPRGEICLRGNTLFSGYH 480

Query: 481 KRPDLTEEVIVDGWFHT 497
           KR DLT+EV+VDGWFHT
Sbjct: 481 KREDLTKEVMVDGWFHT 497

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541119|ref|XP_003539030.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/497 (74%), Positives = 429/497 (86%), Gaps = 1/497 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M E Y+VKVEEARPA   KPS GPVYRCIYAKD L + P+  +SPWQFF D+  R P+N 
Sbjct: 1   MPELYSVKVEEARPATHEKPSAGPVYRCIYAKDALTQLPSHFQSPWQFFRDTTTRCPSNP 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+ SD KVGPY W+TYQE YDAAIR GSAMRSRGVNPG RCGIYGSNCPEWIIAM+
Sbjct: 61  MLGRRQKSDSKVGPYQWITYQEAYDAAIRMGSAMRSRGVNPGYRCGIYGSNCPEWIIAMQ 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNS A+TYVPLYDTLG NAVEFIINHAEVSIAFVQ++KIPS+LSCL R    LKTIVSF
Sbjct: 121 ACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDSKIPSVLSCLDRWS-SLKTIVSF 179

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            NVS++QKKEAEELG SCFSWEEFLQ+G +D +LPPKKKTNI TIMYTSGTTGEPKGV++
Sbjct: 180 GNVSTTQKKEAEELGASCFSWEEFLQMGNIDLDLPPKKKTNICTIMYTSGTTGEPKGVII 239

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
            N+A + +VLS+DQ+  +T +V +E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 240 KNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 299

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           V +LMEDI  LKPT+F GVPRVYDR+Y  IS+KISSGGAL   LF++AYNYKLG ++KG+
Sbjct: 300 VGFLMEDILALKPTLFCGVPRVYDRVYACISSKISSGGALQSTLFQYAYNYKLGYLEKGL 359

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           PQ+KAAPL D LVF KI++A GGR++ +LSGAAPLP HVEEFLRVT GA ++QGYGLTES
Sbjct: 360 PQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAAPLPRHVEEFLRVTFGATMSQGYGLTES 419

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C GCFT +++VF+M+GT+GVPMTT+EARLESVPEMGYDALSS  RGEICLRGNTLFSGY+
Sbjct: 420 CGGCFTGISNVFSMMGTIGVPMTTIEARLESVPEMGYDALSSEARGEICLRGNTLFSGYH 479

Query: 481 KRPDLTEEVIVDGWFHT 497
           K  DLTEEV+VDGWFHT
Sbjct: 480 KHQDLTEEVMVDGWFHT 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575070|ref|XP_003555665.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/497 (73%), Positives = 427/497 (85%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M E YTVKVEE R A DGKPS GPVYR IYAKDGLLE P+  +SPW FF DS KR PNN 
Sbjct: 1   MPEVYTVKVEEGRLATDGKPSVGPVYRSIYAKDGLLEVPSDFKSPWDFFRDSVKRNPNNN 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+ ++ K+G Y WLTYQ+VYDAA++ GSA+RSRGVNPGDRCGIYGSNCPEWIIAME
Sbjct: 61  MLGRRQKTESKLGSYTWLTYQDVYDAAMKMGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNS A++YVPLYDTLG NAVEFIINHAEVSIAFVQE KIPS+LSCL +C   LKTIVSF
Sbjct: 121 ACNSCAVSYVPLYDTLGPNAVEFIINHAEVSIAFVQEKKIPSVLSCLAQCSSNLKTIVSF 180

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            +VS++QKKEAE  G SCFSW EFLQLG LD +LP KKKT+I TIMYTSGTTG+PKGVV+
Sbjct: 181 GSVSTTQKKEAEGHGASCFSWGEFLQLGCLDWDLPSKKKTDICTIMYTSGTTGDPKGVVI 240

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
            N+A +AEVLSVD + ++T +V  E+D YFSFLPLAH+YDQI+ET+CI KG SIGFW+GD
Sbjct: 241 KNEAFMAEVLSVDHIIMLTDRVAGEDDVYFSFLPLAHVYDQIMETYCISKGSSIGFWQGD 300

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           VR+L+EDIQELKPT+F GVPRV+DRIY GI +K+SS G L   LF+ AYNYKL  ++KG+
Sbjct: 301 VRFLLEDIQELKPTIFCGVPRVFDRIYAGIKSKVSSAGPLQSTLFQCAYNYKLKYLEKGL 360

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           PQ+KAAPL D LVF K + A GGR++ +LSGAAPLP HVEEF+RVTSG+ L+QGYGLTES
Sbjct: 361 PQHKAAPLFDRLVFDKTKLALGGRVRILLSGAAPLPRHVEEFMRVTSGSTLSQGYGLTES 420

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C+GCFT++ DV++M GTVGVPMTT+EARLESVPEMGYDALS+VPRGEICLRGNTLFSGY+
Sbjct: 421 CAGCFTAIGDVYSMTGTVGVPMTTIEARLESVPEMGYDALSNVPRGEICLRGNTLFSGYH 480

Query: 481 KRPDLTEEVIVDGWFHT 497
           KR DLT+EV+VDGWFHT
Sbjct: 481 KREDLTKEVMVDGWFHT 497

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115485907|ref|NP_001068097.1| Os11g0558300 [Oryza sativa Japonica Group] gi|77551497|gb|ABA94294.1| AMP-binding enzyme family protein, expressed [Oryza sativa Japonica Group] gi|113645319|dbj|BAF28460.1| Os11g0558300 [Oryza sativa Japonica Group] gi|215766667|dbj|BAG98895.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616147|gb|EEE52279.1| hypothetical protein OsJ_34263 [Oryza sativa Japonica Group]

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/497 (68%), Positives = 418/497 (84%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M ETYTVKV EA PAA GKPS GPVYR IY+KDGL++ P  + SPW FF  + K+ P N+
Sbjct: 1   MEETYTVKVGEATPAAGGKPSAGPVYRSIYSKDGLMKLPEDILSPWDFFSGAVKQYPKNK 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG RKVSDGK G YVWLTY+EVY   I+ GSA+RS  V PG  CGIYGSNCPEW++AM+
Sbjct: 61  MLGQRKVSDGKAGDYVWLTYEEVYQKVIKIGSAIRSLRVKPGGHCGIYGSNCPEWVMAMQ 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNSQ I YVPLYDTLGANAVEFI++HAE+SIAFVQE+KI S+LS + RC  ++K IVSF
Sbjct: 121 ACNSQGICYVPLYDTLGANAVEFIMDHAEISIAFVQESKIQSVLSVVKRCRAHIKAIVSF 180

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            +V+S  K+EAE+LGVSCFSWEEF  +G  + ELP K+K +I TIMYTSGTTG+PKGV++
Sbjct: 181 GDVTSELKREAEQLGVSCFSWEEFSSMGKQNYELPKKQKDDICTIMYTSGTTGDPKGVII 240

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
           TN+A++A V++ + +  VT KV +E+D+YFS+LPLAHI+DQ+I  +CI KG SIGFW+ D
Sbjct: 241 TNRALIAGVMTTEHLLKVTDKVVAEDDSYFSYLPLAHIFDQVIGNYCISKGASIGFWQAD 300

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           +RYLMED+Q +KPT+F GVPRVYDRIYTGI+ KI SGG ++K LF++AYNYKLGN++KG+
Sbjct: 301 IRYLMEDVQMMKPTVFCGVPRVYDRIYTGINQKIQSGGMIAKSLFQYAYNYKLGNLRKGL 360

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
            Q++A+P  D +VFSKI+E  GGR++ +LSGAAPLP HVEEF+RVTS + L QGYGLTES
Sbjct: 361 KQDEASPFFDKIVFSKIKEGLGGRIRLLLSGAAPLPRHVEEFMRVTSCSVLVQGYGLTES 420

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           CSGCFTS+A+VF+MIG+VG P+TT+EARLES+PEMGYDALS+VPRGEICLRG+TLFSGYY
Sbjct: 421 CSGCFTSIANVFSMIGSVGPPVTTIEARLESIPEMGYDALSNVPRGEICLRGHTLFSGYY 480

Query: 481 KRPDLTEEVIVDGWFHT 497
           KRPDLTEEV  DGWFHT
Sbjct: 481 KRPDLTEEVFSDGWFHT 497

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	501
TAIR|locus:2010177	665	LACS2 "long-chain acyl-CoA syn	0.976	0.735	0.665	9.7e-183
TAIR|locus:2014265	665	LACS3 "long-chain acyl-CoA syn	0.984	0.741	0.557	4.5e-153
TAIR|locus:2138141	666	LACS4 "long-chain acyl-CoA syn	0.984	0.740	0.554	3.7e-151
TAIR|locus:2136148	666	AT4G11030 [Arabidopsis thalian	0.984	0.740	0.552	7.6e-151
TAIR|locus:2065195	660	LACS1 "AT2G47240" [Arabidopsis	0.988	0.75	0.477	8.7e-127
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.848	0.606	0.425	5e-83
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.872	0.624	0.400	5.2e-81
WB|WBGene00022037	719	acs-13 [Caenorhabditis elegans	0.860	0.599	0.390	4.3e-77
DICTYBASE|DDB_G0269474	673	fcsB "fatty acyl-CoA synthetas	0.940	0.699	0.347	1.3e-75
DICTYBASE|DDB_G0269242	667	fcsA "long-chain-fatty-acid-Co	0.850	0.638	0.369	2.2e-73

TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1773 (629.2 bits), Expect = 9.7e-183, P = 9.7e-183
 Identities = 327/491 (66%), Positives = 392/491 (79%)

Query:     9 VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS 68
             VEE RPA    PS GPVYRC YAKDGLL+ P  ++SPWQFF ++ K+ PN QMLG R  +
Sbjct:    11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query:    69 DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
             D KVGPY W+TY+E +DAAIR GSA+RSRGV+PG  CGIYG+NCPEWIIAMEAC SQ IT
Sbjct:    71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query:   129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK 188
             YVPLYD+LG NAVEFIINHAEVS+ FVQE  + SILSC   C   LKTIVSF  VSS+QK
Sbjct:   131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query:   189 KEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
             +EA+   VS FSW EF  +G LD   LP K+KT+I TIMYTSGTTGEPKGV+L N AI  
Sbjct:   191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query:   248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED 307
             +VLS+D+M  VT + C   D +FS+LPLAH YDQ++E + + +G S+G+WRGD+RYLM+D
Sbjct:   251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query:   308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
             +Q LKPT+F GVPRVYD++Y GI  KIS+ G + KKLF+FAYNYKLGNM+KG  Q +A+P
Sbjct:   311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query:   368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427
              LD L+F KI+EA GGR   +LSGAAPLP HVEEFLR+   + L+QGYGLTESC G FT+
Sbjct:   371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query:   428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLRGNTLFSGYYKRPDLT 486
             LA VF+M+GTVGVPM TVEARL SVPEMGYDA S+ VPRGEICLRGN++FSGY+KR DLT
Sbjct:   431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query:   487 EEVIVDGWFHT 497
             ++V++DGWFHT
Sbjct:   491 DQVLIDGWFHT 501

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IGI

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1493 (530.6 bits), Expect = 4.5e-153, P = 4.5e-153
 Identities = 276/495 (55%), Positives = 364/495 (73%)

Query:     5 YTVKVEEARPAADG-KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLG 63
             Y V+VE+ +   DG  PS GPVYR IYAKDG  E P  L S W  F  S ++ PNN MLG
Sbjct:     6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query:    64 GRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
              R++ DGK G YVW TY+EV++  I+ G+++R+ GV  GD+CGIYG+N PEWII+MEACN
Sbjct:    66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query:   124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183
             +  +  VPLYDTLGA A+EFII HAEVS+AF +ENKI  +L   P+   YLK IVSF  V
Sbjct:   126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query:   184 SSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 242
             +++Q+ EAE   ++ +SW++FL+LG     ELP K+++++ TIMYTSGTTG+PKGV+LTN
Sbjct:   186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query:   243 QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVR 302
             ++I+  +  V ++     +  + +D Y S+LPLAHI+D++IE  CI++  SIGFWRGDV+
Sbjct:   246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query:   303 YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362
              L+EDI  LKPT+F  VPRV +RIYTG+  K+S GG + KKLF FA+ YK  NM+KG P 
Sbjct:   306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query:   363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS 422
              +A+P+ D +VF K++E  GG ++ +LSGAAPL  H+E FLRV + A + QGYGLTESC 
Sbjct:   366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query:   423 GCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR 482
             G F S+ +  +M+GTVG P+  V+ RLESVPEMGYDAL+S PRGEIC+RG TLFSGYYKR
Sbjct:   426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query:   483 PDLTEEVIVDGWFHT 497
              DLT+EV +DGW HT
Sbjct:   486 EDLTQEVFIDGWLHT 500

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1475 (524.3 bits), Expect = 3.7e-151, P = 3.7e-151
 Identities = 274/494 (55%), Positives = 360/494 (72%)

Query:     5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
             Y  +VEE +  +DG+PS GPVYR I+AKDG  +   G++S W  F  S ++ PNN MLG 
Sbjct:     7 YIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLGR 66

Query:    65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
             R++ DGK G YVW TYQEVYD  ++ G+++RS GV    +CGIYG+N PEWII+MEACN+
Sbjct:    67 REIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNA 126

Query:   125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
               +  VPLYDTLGA+AVEFII+H+EVSI FV+E KI  +    P    Y+KT+VSF  VS
Sbjct:   127 HGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVS 186

Query:   185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
               QK+EAE  G+  ++W+EFL+LG     +LP KKK++I TIMYTSGTTG+PKGV+++N+
Sbjct:   187 REQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNE 246

Query:   244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
             +IV  +  V ++     +  + +D Y S+LPLAHI+D++IE   I  G +IGFWRGDV+ 
Sbjct:   247 SIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKL 306

Query:   304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
             L+ED+ ELKPT+F  VPRV DR+Y+G+  K+S GG L K +F+ A++YK G MKKG    
Sbjct:   307 LIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQSHV 366

Query:   364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
             +A+PL D LVFSK+++  GG ++ +LSGAAPL  HVE FLRV +   + QGYGLTESC+G
Sbjct:   367 EASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAG 426

Query:   424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
              F SL D   M+GTVG P+  V+ RLESVPEM YDAL+S  RGEIC+RG TLFSGYYKR 
Sbjct:   427 TFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYKRE 486

Query:   484 DLTEEVIVDGWFHT 497
             DLT+EV++DGW HT
Sbjct:   487 DLTKEVLIDGWLHT 500

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1472 (523.2 bits), Expect = 7.6e-151, P = 7.6e-151
 Identities = 273/494 (55%), Positives = 354/494 (71%)

Query:     5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
             +  +VE A+ A DG PS GPVYR  +A++G      G++S W  F  + ++ PNN+MLG 
Sbjct:     7 FIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRMLGR 66

Query:    65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
             R++S+GK G YVW TY+EVYD  I+ G+++RS G+  G++CGIYG NC EWII+MEACN+
Sbjct:    67 REISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEACNA 126

Query:   125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
               +  VPLYDTLGA AVEFII+HAEVSIAFV+E KIP +    P    Y+KT+VSF  V 
Sbjct:   127 HGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGGVK 186

Query:   185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
               QK+EAE+LG+   SW+EFL+LG     ELP KK ++I TIMYTSGTTG+PKGV+++N+
Sbjct:   187 PEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMISNE 246

Query:   244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
             +IV     V           SE+D Y S+LPLAH++D+ IE   I  G SIGFWRGDV+ 
Sbjct:   247 SIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDVKL 306

Query:   304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
             L+ED+ ELKP++F  VPRV DR+YTG+  K+S GG   KK+F+ A++YK GNMKKG    
Sbjct:   307 LIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQSHV 366

Query:   364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
              A+P  D LVF+K+++  GG ++ +LSGAAPL  H+E FLRV +   + QGYGLTESC+G
Sbjct:   367 AASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESCAG 426

Query:   424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
              F +  D  +M+GTVG P+  V+ RLESVPEM YDAL S PRGEIC+RG TLFSGYYKR 
Sbjct:   427 TFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYKRE 486

Query:   484 DLTEEVIVDGWFHT 497
             DLT+EV +DGW HT
Sbjct:   487 DLTKEVFIDGWLHT 500

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
 Identities = 237/496 (47%), Positives = 319/496 (64%)

Query:     3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
             +++  KVEE     DGKPS GPVYR + ++ G     + + + W  F  S ++ P+N ML
Sbjct:     2 KSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNML 61

Query:    63 GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
             G R++ D KVGPY+W TY+EVY+  ++ GSA+R+ G  PG R GIYG NCP+WIIAMEAC
Sbjct:    62 GWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEAC 121

Query:   123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
              +  +  VPLYDTLG+ AV++I+ HAE+   FVQ+ KI  +L    +C   LK IVSF N
Sbjct:   122 AAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTN 181

Query:   183 VSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLT 241
             VS     +A E+GV  +SW +FL +G    E   P K  NI TIMYTSGT+G+PKGVVLT
Sbjct:   182 VSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLT 241

Query:   242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
             +QA+   V+ +D          + +D Y SFLPLAHI D++ E +   KG S+G++ G++
Sbjct:   242 HQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNL 301

Query:   302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
               L +DIQELKPT  +GVPRV++RI+ GI   +       + +F   Y +KL  + +G  
Sbjct:   302 NVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGYS 361

Query:   362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC 421
              +KA+P+ D + F KIR+  GGR++ ++SG APL   +EEFLRVT    + QGYGLTE+ 
Sbjct:   362 HSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTETL 421

Query:   422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
              G      D   M+GTVG+P    E RLE V EMGYD L   P GEIC+RG  +FSGYYK
Sbjct:   422 GGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYYK 481

Query:   482 RPDLTEEVIVDGWFHT 497
              P+LTEEV+ DGWFHT
Sbjct:   482 NPELTEEVMKDGWFHT 497

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 187/440 (42%), Positives = 256/440 (58%)

Query:    62 LGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121
             LG R   DG VG Y W+TY E   A    GS +   G+  G   GIY  N PEW+I   A
Sbjct:   103 LGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIPMGSSVGIYFINRPEWLIVDHA 162

Query:   122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA 181
             C+S +   VPLYDTLG +AV+FI+NHA V   F     + S+LSCL      ++ +V   
Sbjct:   163 CSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETLNSLLSCLSEMPS-VRLVVVVG 221

Query:   182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE--LPPKKKTNISTIMYTSGTTGEPKGVV 239
              +  S        GV   S+   L  G  + +   PPK   +++TI YTSGTTG PKGVV
Sbjct:   222 GLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPKPD-DVATICYTSGTTGTPKGVV 280

Query:   240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
             LT+  ++A V      F V  K  S  D Y S+LPLAHIY++  +   ++ G ++GF++G
Sbjct:   281 LTHANLIANVAG--SSFSV--KFFSS-DVYISYLPLAHIYERANQILTVYFGVAVGFYQG 335

Query:   300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
             D   L++D+  L+PT+FS VPR+Y+RIY GI N + + G L ++LF  AYN K   +  G
Sbjct:   336 DNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERLFNAAYNAKKQALLNG 395

Query:   360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE 419
                  A+P+ D LVF+KI++  GGR++ M SGA+PL   V EFL+V  G  +T+GYG+TE
Sbjct:   396 ---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVMEFLKVCFGGRVTEGYGMTE 452

Query:   420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSV-PRGEICLRGNTLFSG 478
             + S   + + +  N+ G VG P    E +L  VPEM Y +     PRGEIC+RG  +F+G
Sbjct:   453 T-SCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQPHPRGEICVRGPIIFTG 511

Query:   479 YYKRPDLTEEVI-VDGWFHT 497
             YYK    T+EVI  DGW HT
Sbjct:   512 YYKDEIQTKEVIDEDGWLHT 531

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 182/454 (40%), Positives = 258/454 (56%)

Query:    49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
             F  + +    N+ LG R  SDG +G Y W+TY E        GS +   GVN GD  G+Y
Sbjct:    90 FVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDCVGLY 149

Query:   109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
               N PEW++   AC + +   VPLYDTLG +AV+F++NHA +   F     +  +LS L 
Sbjct:   150 FINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTLNILLSFLA 209

Query:   169 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMY 227
                  ++ IV                GV+  S+++ L  G        P K  +I+TI Y
Sbjct:   210 EIPS-IRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKPEDIATICY 268

Query:   228 TSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
             TSGTTG PKGVVLT+  ++A V   SV+  F  +       D Y S+LPLAHIY++  + 
Sbjct:   269 TSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-------DVYISYLPLAHIYERANQI 321

Query:   286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
               ++ G ++GF++GDV  LM+D   L+PT+F  VPR+Y+RIY GI++ + S G + K+LF
Sbjct:   322 MGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGVVKKRLF 381

Query:   346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
             E AYN K   +  G  +  +A   D LVF+KI+E  GGR++ M SGA+PL   V +FLR+
Sbjct:   382 EIAYNSKKQAIING--RTPSA-FWDKLVFNKIKEKLGGRVRFMGSGASPLSPDVMDFLRI 438

Query:   406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VP 464
               G  + +GYG+TE+ S   +++ D  N+ G VG P    E +L  VPEM Y +     P
Sbjct:   439 CFGCSVREGYGMTET-SCVISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTSDDQPYP 497

Query:   465 RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
             RGEIC+RG  +F GYYK  + T E++  DGW HT
Sbjct:   498 RGEICVRGPIIFKGYYKDEEQTREILDGDGWLHT 531

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

WB|WBGene00022037 acs-13 [Caenorhabditis elegans (taxid:6239)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 177/453 (39%), Positives = 264/453 (58%)

Query:    55 RIPNN-QMLGGR-KVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPG--DRCGIYGS 110
             R+ NN  MLG R K SDG + PYVW +Y  + + A     A R  GV  G  +  GIY  
Sbjct:   120 RLSNNGPMLGRRVKQSDGSI-PYVWESYNTILERADNVSVAFRELGVPTGNAENIGIYSK 178

Query:   111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE-NKIPSILSCLPR 169
             N  EWII   A  + +   VP+Y+TLG+ A  FI+N AE+ I    + +K   +L    +
Sbjct:   179 NRAEWIITEFATYNYSNVIVPIYETLGSEASIFILNQAEIKIVVCDDISKATGLLKFKEQ 238

Query:   170 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG----TLDCELPPKKKTNISTI 225
             C   L T+V    V+   K  A  LGV   ++E+  ++G    T    +PP  + +++TI
Sbjct:   239 CPS-LSTLVVMEPVTDELKTTASSLGVEVLTFEDLEKIGKNAKTRPAHIPPTPE-DLATI 296

Query:   226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
              YTSGTTG PKGV+LT+  ++A+ + +D  F  +G   +  D+  SFLPLAH+ +++IE+
Sbjct:   297 CYTSGTTGTPKGVMLTHANVIADGVCMD-FFKHSGIAAT--DSMISFLPLAHMLERVIES 353

Query:   286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
              C   G  +GF+RGD+R L EDI+ELKPT+   VPRV +R+Y  + ++++    L K LF
Sbjct:   354 VCFCVGAKVGFYRGDIRVLAEDIKELKPTVVPVVPRVLNRLYDKVMSEVNKS-TLKKMLF 412

Query:   346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
             +FA +YK  +M     +N      D+LVF KIRE FGGR++ M++G+APL  +V  F+R 
Sbjct:   413 DFAISYKARDMANFNIRNDG--FFDNLVFKKIREGFGGRVRLMITGSAPLSTNVLTFVRA 470

Query:   406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR 465
               G  + +GYG TE  + C  S+ +  ++ G VG+ + + + +L  VPE+ Y A      
Sbjct:   471 AMGCVVVEGYGQTECVAACTVSM-EGDSLAGHVGMVIPSCQIKLVDVPELNYYAKDQA-- 527

Query:   466 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
             GE+C++G+ +F GYYK    T+E I  DGW HT
Sbjct:   528 GEVCVKGHIIFKGYYKNEQQTKETIDEDGWLHT 560

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 169/487 (34%), Positives = 266/487 (54%)

Query:    19 KP-SGGPVYRCIYAKDGLLE--SPAGLESPWQFFCDSAKRIPNNQMLGGRKV-SDGKVGP 74
             KP +GG + R     D L+       + + +     S K+    +  G RK  S+G +G 
Sbjct:    36 KPENGGRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCFGERKKDSNGNLGK 95

Query:    75 YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD 134
             + W++Y    +        +   G+ P  + GI+  N  EW+I   A   Q+   V  Y+
Sbjct:    96 FEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSASFIQSYCVVSFYE 155

Query:   135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
             TLG  ++ ++  HAE+ +AF     +   L  + +    LKTI+ F ++       A+EL
Sbjct:   156 TLGVESLSYVTEHAEIGLAFCSAETLQKTLD-IAKGVKVLKTIICFDSIDKEHYNIAKEL 214

Query:   195 GVSCFSWEEFLQLGT----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
             GV+ ++++E ++ G          PP   T +STIMYTSGTTG PKGV++T++ + + V 
Sbjct:   215 GVTLYTYDEIMKKGKEANGKHKHTPPTPDT-LSTIMYTSGTTGPPKGVMITHKNLTSVVC 273

Query:   251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQE 310
             +V   F+   KV  + D ++S+LP AH+ ++++     H G +IG + GD+  ++ +++ 
Sbjct:   274 AVSD-FI---KVY-DTDVHYSYLPYAHVLERVVILAAFHFGAAIGIFSGDISNILVEVKL 328

Query:   311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
             L PT+F GVPRV++RI T +  +IS   AL + LF  AYN K  +++ G        +LD
Sbjct:   329 LSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQHGFKLPIIEKVLD 388

Query:   371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
              + FSKI++A GG+++ +LSG+APL    E FLRV     + QGYG +E C G      D
Sbjct:   389 LVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGASEGCGGDACKRLD 448

Query:   431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490
                 +GT+G P  + E +L  VPE+GYD+   V  GE+CLRG ++ SGYYK  + T E  
Sbjct:   449 D-ESVGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSGYYKDEEKTREEF 507

Query:   491 VDGWFHT 497
              DGWFHT
Sbjct:   508 KDGWFHT 514

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;ISS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 165/447 (36%), Positives = 262/447 (58%)

Query:    58 NNQMLGGRKV-SDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116
             ++  LG R++ +DGK G Y W++Y++    A   GSA+   G+N GDR GI+  N PEW+
Sbjct:    67 DSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWV 126

Query:   117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT 176
             ++  A  + ++  V LY TLGANA+E+++NH+E+S+   +   +  ILS +P   +  KT
Sbjct:   127 LSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILS-MPGTTI--KT 183

Query:   177 IVSFANV-SSSQKKEAEELGVSCFSWEEFLQLGTLDC---ELPPKKKTNISTIMYTSGTT 232
             IVS+  +  ++  K  +   V  +   +F +LG  +    E+P  +  ++ T++YTSG+T
Sbjct:   184 IVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPE--DLCTLLYTSGST 241

Query:   233 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC 292
             G PKGV+LT+  +V+EV   +  F   G +   ED + S+LPLAH +++ + +   + G 
Sbjct:   242 GNPKGVMLTHTNMVSEVAGAN--FSPAGVI--PEDVHMSYLPLAHSFERAVVSLMCYVGG 297

Query:   293 SIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK 352
              IGF+ G +  L  DIQ L+PT   G PRV+ R++  +   +++   L K LF +  N K
Sbjct:   298 QIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSK 357

Query:   353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT 412
                ++ G       P+ D LVFSK ++  GGR++ +LSG+APL   + EFLR     P+ 
Sbjct:   358 QSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCPVV 413

Query:   413 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLR 471
              GYGL+E+  G   +  +  N +G VG P++  E +L  VPEM Y +     PRGE+C+R
Sbjct:   414 SGYGLSENVGGASVAYPED-NNVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRGEVCIR 472

Query:   472 GNTLFSGYYKRPDLTEEVIV-DGWFHT 497
             G  +F GY+K P+ T+E +  DGWFHT
Sbjct:   473 GFNVFKGYFKDPEKTKEDLKEDGWFHT 499

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0010009 "external side of endosome membrane" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XIA9	LACS2_ARATH	6, ., 2, ., 1, ., 3	0.6659	0.9760	0.7353	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.921
3rd Layer	6.2.1.3	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_IX0278	long-chain-fatty-acid-CoA ligase (EC-6.2.1.3) (658 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_290034	acyl-CoA oxidase (EC-1.3.3.6) (664 aa)						•			0.901
	grail3.0096010101	acyl-CoA oxidase (EC-1.3.3.6) (639 aa)						•			0.900
	fgenesh4_pg.C_scaffold_3547000001	annotation not avaliable (326 aa)						•			0.899
	fgenesh4_pg.C_LG_XIX000851	acyl-CoA oxidase (EC-1.3.3.6) (680 aa)						•			0.899
	eugene3.00100112	annotation not avaliable (252 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VII0199	acyl-CoA oxidase (EC-1.3.3.6) (689 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_V0077	acyl-CoA oxidase (EC-1.3.3.6) (691 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_VI1706	acyl-CoA oxidase (EC-1.3.3.6) (436 aa)						•			0.899
	gw1.XVI.1394.1	hypothetical protein (823 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	501
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.0
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-138
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-111
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	4e-81
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	6e-80
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-73
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-72
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	3e-72
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	5e-59
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	9e-58
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-53
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	9e-48
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	7e-47
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	5e-46
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	3e-42
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	5e-34
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-33
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	7e-32
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	4e-31
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-30
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-30
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-30
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-30
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	9e-29
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-27
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-27
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	8e-26
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-25
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-24
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	3e-24
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-23
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	1e-21
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	2e-21
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-20
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-20
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	3e-20
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-19
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-19
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-19
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	6e-19
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	6e-19
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-18
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	3e-18
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	6e-18
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	3e-17
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-16
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-16
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	8e-15
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	1e-14
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-14
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-14
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	6e-14
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	6e-14
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	9e-14
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	1e-13
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	4e-13
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	4e-13
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	9e-13
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-12
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-12
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-12
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-12
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	4e-12
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-11
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-11
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	6e-11
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	7e-11
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-10
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-10
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-10
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-10
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-10
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	3e-10
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-10
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	6e-10
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	6e-10
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	9e-10
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-09
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-09
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	1e-09
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	1e-09
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-09
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-09
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	3e-09
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	8e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-08
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-08
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-08
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-08
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-08
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-08
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	4e-08
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-08
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	5e-08
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	6e-08
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	6e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-08
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-07
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-07
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-07
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-07
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-07
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-07
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-07
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	2e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-07
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-07
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	3e-07
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-07
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-07
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	4e-07
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	5e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-07
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	7e-07
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	8e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	8e-07
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-06
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-06
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-06
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	3e-06
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	3e-06
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	3e-06
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	3e-06
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	4e-06
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	5e-06
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	7e-06
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	8e-06
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-05
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-05
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	2e-05
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-05
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	3e-05
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-05
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	4e-05
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	5e-05
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	6e-05
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	6e-05
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	7e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	7e-05
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	7e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-04
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	1e-04
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	1e-04
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	1e-04
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-04
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	1e-04
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-04
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-04
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-04
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-04
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-04
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	4e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-04
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-04
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	6e-04
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	6e-04
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	6e-04
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	7e-04
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	9e-04
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	0.001
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	0.001
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	0.002
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	0.002
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	0.002
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.003
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	0.003
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	0.004

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  965 bits (2496), Expect = 0.0
 Identities = 393/497 (79%), Positives = 447/497 (89%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M+ETYTVKVEE+RPA  GKPS GPVYR IYAKDGLL+ PA ++SPWQFF D+ K+ PNNQ
Sbjct: 1   MAETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQ 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+V+D KVGPYVWLTY+EVYDAAIR GSA+RSRGVNPGDRCGIYGSNCPEWIIAME
Sbjct: 61  MLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNSQ ITYVPLYDTLGANAVEFIINHAEVSIAFVQE+KI SILSCLP+C   LKTIVSF
Sbjct: 121 ACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSF 180

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            +VSS QK+EAEELGVSCFSWEEF  +G+LDCELPPK+KT+I TIMYTSGTTGEPKGV+L
Sbjct: 181 GDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVIL 240

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
           TN+AI+AEVLS D +  VT +V +EED+YFS+LPLAH+YDQ+IET+CI KG SIGFW+GD
Sbjct: 241 TNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGD 300

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           +RYLMED+Q LKPT+F GVPRVYDRIYTGI  KISSGG L KKLF+FAYNYKLGN++KG+
Sbjct: 301 IRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGL 360

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
            Q +A+P LD LVF KI+E  GGR++ +LSGAAPLP HVEEFLRVTS + L+QGYGLTES
Sbjct: 361 KQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTES 420

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C GCFTS+A+VF+M+GTVGVPMTT+EARLESVPEMGYDALS VPRGEICLRGNTLFSGY+
Sbjct: 421 CGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYH 480

Query: 481 KRPDLTEEVIVDGWFHT 497
           KR DLTEEV++DGWFHT
Sbjct: 481 KRQDLTEEVLIDGWFHT 497

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  620 bits (1600), Expect = 0.0
 Identities = 275/494 (55%), Positives = 360/494 (72%), Gaps = 1/494 (0%)

Query: 5   YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
           +  +VEE +  +DG+PS GPVYR I+AKDG      G++S W  F  S ++ PNN MLG 
Sbjct: 7   FIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGR 66

Query: 65  RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           R++ DGK G YVW TYQEVYD  I+ G+++RS GV    +CGIYG+N PEWII+MEACN+
Sbjct: 67  REIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNA 126

Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
             +  VPLYDTLGA AVEFII+H+EVSI FV+E KI  +    P    Y+KT+VSF  VS
Sbjct: 127 HGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVS 186

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             QK+EAE  G+  ++W+EFL+LG     +LP KKK++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 REQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNE 246

Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
           +IV  +  V ++        + +D Y S+LPLAHI+D++IE   I  G +IGFWRGDV+ 
Sbjct: 247 SIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKL 306

Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
           L+ED+ ELKPT+F  VPRV DR+Y+G+  K+S GG L K +F+ A++YK GNMKKG    
Sbjct: 307 LIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHV 366

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
           +A+PL D LVF+K+++  GG ++ +LSGAAPL  HVE FLRV +   + QGYGLTESC+G
Sbjct: 367 EASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAG 426

Query: 424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
            F SL D  +M+GTVG P+  V+ RLESVPEM YDAL+S PRGEIC+RG TLFSGYYKR 
Sbjct: 427 TFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKRE 486

Query: 484 DLTEEVIVDGWFHT 497
           DLT+EV++DGW HT
Sbjct: 487 DLTKEVLIDGWLHT 500

Length = 666

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  593 bits (1530), Expect = 0.0
 Identities = 239/496 (48%), Positives = 324/496 (65%), Gaps = 1/496 (0%)

Query: 3   ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
           +++  +VEE     DGKPS GPVYR + +K G     + + + W  F  S ++ P+N+ML
Sbjct: 2   KSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKML 61

Query: 63  GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           G R++ DGKVGPY+W TY+EVY+  ++ GSA+R+ G  PG R GIYGSNCP+WI+AMEAC
Sbjct: 62  GWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEAC 121

Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
            + ++  VPLYDTLG  AV++I++HAE+   FVQ+ KI  +L    +    LK IVSF +
Sbjct: 122 AAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTS 181

Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
           V+  +  +A ++GV  +SW +FL +G  +  E  P K  +I TIMYTSGT+G+PKGVVLT
Sbjct: 182 VTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLT 241

Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
           ++A+   V  VD          + +D Y SFLPLAHI D++IE +   KG S+G++ GD+
Sbjct: 242 HEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDL 301

Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
             L +D+ ELKPT+ +GVPRV++RI+ GI   +       + +F   Y YKL  M +G  
Sbjct: 302 NALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYS 361

Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC 421
             KA+P+ D L F K++   GGRL+ ++SG APL   +EEFLRVTS A + QGYGLTE+ 
Sbjct: 362 HKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETL 421

Query: 422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
                   D   M+GTVG P    E RLE VPEMGYD L   PRGEIC+RG  LFSGYYK
Sbjct: 422 GPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYK 481

Query: 482 RPDLTEEVIVDGWFHT 497
            P+LTEEV+ DGWFHT
Sbjct: 482 NPELTEEVMKDGWFHT 497

Length = 660

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  537 bits (1385), Expect = 0.0
 Identities = 193/427 (45%), Positives = 257/427 (60%), Gaps = 46/427 (10%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           GPY W++Y+EV + A+  GS +R+ G+ PGD+ GI+  N PEWII  +AC SQ++  VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
           YDTLG  A+E+I+N  E+SI F    K+                                
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88

Query: 193 ELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
                 +S+EE  +LG  +     P K  +++TIMYTSGTTG PKGV+LT+  IVA V  
Sbjct: 89  ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
           ++++     +     D Y S+LPLAHI+++++E  C++ G  IG++ GD R L  DI+EL
Sbjct: 143 INKIV---PEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199

Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
           KPT+F GVPRV DRIY GI  K+++ G L + LF FAYNYKL  +++G     A+PL D 
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257

Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV 431
           LVF KI+ A GGR++ MLSG APL    +EFLRV  G P+ QGYGLTE+C+G   S    
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317

Query: 432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI- 490
               G VG P+   E +L  VPEMGY A    PRGEIC+RG  +F GYYK P+ T E   
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376

Query: 491 VDGWFHT 497
            DGWFHT
Sbjct: 377 EDGWFHT 383

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  412 bits (1062), Expect = e-138
 Identities = 183/456 (40%), Positives = 254/456 (55%), Gaps = 21/456 (4%)

Query: 49  FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
           F  + +   + + LG R   DG VG Y W+TY E   A    GS +   G+  G   G+Y
Sbjct: 50  FVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLY 109

Query: 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
             N PEW+I   AC++ +   VPLYDTLG +AV+FI+NHAEV+  F     + ++LSCL 
Sbjct: 110 FINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS 169

Query: 169 RC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIM 226
               + L  IV                GV   ++ + L  G    +   P K  +++TI 
Sbjct: 170 EIPSVRL--IVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATIC 227

Query: 227 YTSGTTGEPKGVVLTNQAIVAEV--LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           YTSGTTG PKGVVLT+  ++A V   S+   F  +       D + S+LPLAHIY+++ +
Sbjct: 228 YTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPS-------DVHISYLPLAHIYERVNQ 280

Query: 285 THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344
              +H G ++GF++GD   LM+D+  L+PT+F  VPR+Y+RIY GI+N +   G L ++L
Sbjct: 281 IVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERL 340

Query: 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR 404
           F  AYN K   ++ G      +P+ D LVF+KI+   GGR++ M SGA+PL   V EFLR
Sbjct: 341 FNAAYNAKKQALENGKN---PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLR 397

Query: 405 VTSGAPLTQGYGLTESCSGCFTSLADVF-NMIGTVGVPMTTVEARLESVPEMGY-DALSS 462
           +  G  + +GYG+TE  + C  S  D   N+ G VG P    E +L  VPEM Y      
Sbjct: 398 ICFGGRVLEGYGMTE--TSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQP 455

Query: 463 VPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
            PRGEIC+RG  +F GYYK    T EVI  DGW HT
Sbjct: 456 YPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHT 491

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  341 bits (877), Expect = e-111
 Identities = 143/437 (32%), Positives = 224/437 (51%), Gaps = 36/437 (8%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           G +  +TY+E+Y+      S + S G+  GDR  I+ +N PEW IA  A  +     VP+
Sbjct: 41  GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPS-ILSCLPRCCLYLKTIVSFANV------SS 185
           Y T     + +I+N +E  + FV+  ++   +L  L  C   +  IV    V       +
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKA 160

Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI 245
              +   + G+S F     +    L+  + P K  +++TI+YTSGTTG PKGV+LT++ +
Sbjct: 161 LVLEVFPDEGISLFL----IDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNL 216

Query: 246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM 305
           +A+V  +D++    G      D   SFLPLAHI+++  E      G     ++ D R L+
Sbjct: 217 LAQVAGIDEVLPPIG----PGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLL 272

Query: 306 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 365
           ED++E++PT+  GVPRV++++Y GI  K++   A+ +KLF +A       + + +     
Sbjct: 273 EDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGP 332

Query: 366 APLL---DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS 422
              L   D LVF KIR+A GGR++  LSG APL   +  F R + G P+ +GYGLTE+ +
Sbjct: 333 LSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR-SLGIPILEGYGLTETSA 391

Query: 423 G-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
                        +GTVG P+  +E ++                GEI +RG  +  GYYK
Sbjct: 392 VVSVNPPDRFV--LGTVGKPLPGIEVKI-------------ADDGEILVRGPNVMKGYYK 436

Query: 482 RPDLTEEVIV-DGWFHT 497
            P+ T E    DGWF T
Sbjct: 437 NPEATAEAFTEDGWFRT 453

Length = 613

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  265 bits (680), Expect = 4e-81
 Identities = 172/507 (33%), Positives = 252/507 (49%), Gaps = 62/507 (12%)

Query: 39  PAGLESPW-------QFFCDSAKRIPNNQMLGGRKV--------SDGK------VGPYVW 77
           P  +E+PW         F  S K+  + ++LG RK+        SDG+      +G Y W
Sbjct: 47  PELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEW 106

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY +V++    F S + + G N  +R  I+     EW+IA++ C  Q IT V +Y +LG
Sbjct: 107 ITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLG 166

Query: 138 ANAVEFIINHAEVSIAFV---QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
             A+   +N  EV+       Q  K+  I S L      +K ++   +            
Sbjct: 167 EEALCHSLNETEVTTVICDSKQLKKLIDISSQLET----VKRVIYMDDEGVDSDSSLSGS 222

Query: 195 G---VSCFSWEEFL-QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
               VS FS  E L +   +D +LP     +I+ IMYTSG+TG PKGV++T+  IVA V 
Sbjct: 223 SNWTVSSFSEVEKLGKENPVDPDLP--SPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVA 280

Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME---- 306
            V  M VV      + D Y ++LPLAHI +   E+     G +IG+  G    L +    
Sbjct: 281 GV--MTVVPK--LGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNK 334

Query: 307 -------DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
                  D   LKPT+ + VP + DR+  G+  K+ + G L+KKLF+ AY  +L  ++  
Sbjct: 335 IKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGS 394

Query: 360 MPQNKAAPLL--DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGL 417
                    L  D+LVF KIR   GGR++ MLSG APL    + F+ +  GAP+ QGYGL
Sbjct: 395 WFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGL 454

Query: 418 TESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLRGNTL 475
           TE+C+G  F+   D    +G VG P+     +L S  E GY      +PRGEI + G ++
Sbjct: 455 TETCAGATFSEWDDT--SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSV 512

Query: 476 FSGYYKRPDLTEEVI-VDG----WFHT 497
             GY+K  + T+EV  VD     WF+T
Sbjct: 513 TLGYFKNQEKTDEVYKVDERGMRWFYT 539

Length = 696

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  262 bits (672), Expect = 6e-80
 Identities = 140/442 (31%), Positives = 220/442 (49%), Gaps = 41/442 (9%)

Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
            ++TY E+++  + FG  +   G+  G    IY     EW+ ++    SQ++    +Y  
Sbjct: 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYAN 179

Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCL-----PRCCLYLKTIVSFANVSSSQKKE 190
           LG +A+ + +   E          +P++L  +     P       TI+   ++ +S   E
Sbjct: 180 LGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-----TIIYLDSLPASVDTE 234

Query: 191 AEELGVSCFSWEEFLQLGTLD-CELPPKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIV 246
               G    +W + +  G       P     N   ++ IMYTSGTTG+PKGV+ T+ ++ 
Sbjct: 235 ----GCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLT 290

Query: 247 AEVLSVDQMFV-VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM 305
           A +L+++     + G    E++TY S+LPLAHI +  +    + +G  IGF  G  R L 
Sbjct: 291 AGILALEDRLNDLIGPP-EEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLT 347

Query: 306 E-------DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
           +       D+ E +P    GVPR++D I   +  K+   G+L +++F+ AY  +L  +K+
Sbjct: 348 DTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKE 407

Query: 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT 418
           G    K  P  +  VFS  R   GGR++AMLSG  PL    +EF+ V  G  + QG+GLT
Sbjct: 408 G----KDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLT 462

Query: 419 ESCSGCFTSLADVFNM-IGTVGVPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLF 476
           E+   C   +    ++    VG  +  VE +L    E  + D     PRGEI LRG  LF
Sbjct: 463 ETV--CCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDT--PEPRGEILLRGPFLF 518

Query: 477 SGYYKRPDLTEEVIV-DGWFHT 497
            GYYK+ +LT EV+  DGWFHT
Sbjct: 519 KGYYKQEELTREVLDEDGWFHT 540

Length = 700

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  238 bits (609), Expect = 1e-73
 Identities = 111/430 (25%), Positives = 176/430 (40%), Gaps = 78/430 (18%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           TY+E+ + A R  +A+R+ GV PGDR  I   N PEW++A+ A       YVPL  +L A
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
             + +I+  +E  +    +  +P +L  L +  + L  I+   +       + E L    
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLA--- 117

Query: 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV 258
                     + +   PP    +++ I+YTSGTTG+PKGV+LT++ ++A    + + F +
Sbjct: 118 --------GASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL 169

Query: 259 TGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF---WRGDVRYLMEDIQELKPTM 315
           T       D     LPL            +  G ++     +  D   L++ I++ K T+
Sbjct: 170 T-----PGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTV 224

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
             GVP +   +                                       AP       S
Sbjct: 225 LYGVPTLLRLLL-------------------------------------KAPEEKKYDLS 247

Query: 376 KIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434
            +R         +LSG  PLP  +         G PL  GYG TE+      +L     +
Sbjct: 248 SLRL--------VLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEV 299

Query: 435 -IGTVGVPMTTVEARLESVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVI 490
             G++G P+  VE ++  + E G      VP    GE+C+RG  +  GY   P+LT E  
Sbjct: 300 KPGSIGRPLPGVEVKV--LDEEG----EPVPPGEVGELCIRGPGVARGYLNDPELTAERF 353

Query: 491 V-DGWF--HT 497
           V DGW    T
Sbjct: 354 VEDGWGMYRT 363

Length = 412

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  238 bits (609), Expect = 1e-72
 Identities = 131/443 (29%), Positives = 192/443 (43%), Gaps = 82/443 (18%)

Query: 69  DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
            G+   Y   T+ +V D A R  +A++S G+ PGDR  I   NC EWIIA  A       
Sbjct: 1   GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57

Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFV--------QENKIPSILSCLPRCCLYLKTIVSF 180
            VPLY TL A  + +++ H++    FV         +  +P  L  +        T+   
Sbjct: 58  SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIIL--FPYSTLKDH 115

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
                             + W++ L         P  +  +++TI+YTSGTTG+PKGV+L
Sbjct: 116 ------------------YKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVML 157

Query: 241 TNQAI--VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGFW 297
           +  A    A+               +  D   S+LPLAHI +  I+E   ++ G  + F 
Sbjct: 158 SFGAFAFAAQGTIEIIGL-------TPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFV 210

Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357
              +     D+Q  +PT+F  VPR++ +   GI  K+       +KL     N  L    
Sbjct: 211 ES-LDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLP-----PEKL-----NLLLKI-- 257

Query: 358 KGMPQNKAAPLLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYG 416
                    P+L SLV  KI +  G  + +   SGAAP+P  +  + R   G P+ +GYG
Sbjct: 258 ---------PILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYG 307

Query: 417 LTESC-SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTL 475
           +TE+          D    IGTVG P+  VE ++                GEI +R   L
Sbjct: 308 MTENFAYSTLNYPGD--RRIGTVGKPIPGVELKIS-------------EDGEILIRSPGL 352

Query: 476 FSGYYKRPDLTEEVIV-DGWFHT 497
            SGYYK P+ T E    DGW HT
Sbjct: 353 MSGYYKDPEKTAEAFTEDGWLHT 375

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  235 bits (603), Expect = 3e-72
 Identities = 96/278 (34%), Positives = 145/278 (52%), Gaps = 54/278 (19%)

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           ++T++YTSGTTG PKGV+LT++ ++A+  ++ ++  ++       D   SFLPLAH+++Q
Sbjct: 90  LATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLS-----PGDRVLSFLPLAHVFEQ 144

Query: 282 IIETH-CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340
            +  +  +  G  + F       L+ED++E++PT+F  VPRV+++IY GI  K+++ G L
Sbjct: 145 RLGEYLPLSSGARVNF-AESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPL 203

Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE 400
            +KLF +A                                 GGRL+  +SG APLP  V 
Sbjct: 204 KRKLFRWA-------------------------------LGGGRLRFAVSGGAPLPPEVL 232

Query: 401 EFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDAL 460
           EF R   G P+ +GYGLTE+      +       IGTVG P+  VE R+           
Sbjct: 233 EFFR-ALGIPILEGYGLTETSGVATVNRPGDIR-IGTVGKPLPGVEVRI----------- 279

Query: 461 SSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
                GEI +RG  +  GYYK P+ T E +  DGW HT
Sbjct: 280 --AEDGEILVRGPNVMKGYYKNPEATAEALDEDGWLHT 315

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  204 bits (521), Expect = 5e-59
 Identities = 131/453 (28%), Positives = 209/453 (46%), Gaps = 65/453 (14%)

Query: 75  YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA-MEACNSQAITYVPLY 133
           +  LTY++ Y+A  +   A    G+      GI G N PEW IA + A  +  I  V +Y
Sbjct: 6   WHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIA-VGIY 64

Query: 134 DTLGANAVEFIINHAEVSIAFV----QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK 189
            T    A +++   +E +I  V    Q  KI +I   LP     LK I+ +       ++
Sbjct: 65  TTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPH----LKAIIQY-------RE 113

Query: 190 EAEELGVSCFSWEEFLQLG------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             +E   + +SW+EF++LG       LD  +  +K     T++YTSGTTG PKGV+L++ 
Sbjct: 114 PLKEKEPNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHD 173

Query: 244 AIV--AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRGD 300
            I   A+           G+     ++  S+LPL+HI  QI++    I  G  + F + D
Sbjct: 174 NITWTAKAAVKHMDLRTVGQ-----ESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPD 228

Query: 301 VR--YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
                L++ ++E++PT F GVPRV+++I   +    +    L +K+  +A          
Sbjct: 229 ALKGTLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWA-------KGV 281

Query: 359 GMPQNKAAP-----------LLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVT 406
           G+  N               L   LVF K+R+A G  R Q   +GAAP+     EF  ++
Sbjct: 282 GLETNLKLMGGESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFF-LS 340

Query: 407 SGAPLTQGYGLTESCSGCFT-SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR 465
              P+ + YG++E  SG  T S    +  + + G  +   E ++ +    G         
Sbjct: 341 LNIPIMELYGMSE-TSGPHTVSNPQNYR-LLSCGKALPGCETKIHNPDADGI-------- 390

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
           GEIC+ G  +F GY    + TEE I  DGW H+
Sbjct: 391 GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHS 423

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  199 bits (509), Expect = 9e-58
 Identities = 111/437 (25%), Positives = 166/437 (37%), Gaps = 87/437 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY+E+   A R  +A+++ GV PGDR  I   N PE++IA  A        VPL   L 
Sbjct: 39  LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + +I+N A   +          + +      + L  ++                   
Sbjct: 99  PRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPI--------- 149

Query: 198 CFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
             + E     G   D +  P    +++ ++YTSGTTG PKGVVLT++ ++A    +    
Sbjct: 150 --TLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL 207

Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM----------- 305
              G   + +D   S+LPL HI+  I+       G       G    L+           
Sbjct: 208 ---GGGLTPDDVVLSWLPLFHIFGLIV-------GLLAPLLGGGTLVLLSPEPFDPEEVL 257

Query: 306 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 365
             I++ K T+ SGVP                                             
Sbjct: 258 WLIEKYKVTVLSGVPTFLRE---------------------------------------- 277

Query: 366 APLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSG- 423
             LLD+    K  +     L+ +LSG APLP  + E F        + +GYGLTE+    
Sbjct: 278 --LLDNP--EKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVV 333

Query: 424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR--GEICLRGNTLFSGYYK 481
                 D+    G+VG P+  VE R+        D    +P   GEI +RG  +  GY+ 
Sbjct: 334 TINPPDDLLAKPGSVGRPLPGVEVRIVDP-----DGGEVLPGEVGEIWVRGPNVMKGYWN 388

Query: 482 RPDLTEEVIV-DGWFHT 497
           RP+ T E    DGW  T
Sbjct: 389 RPEATAEAFDEDGWLRT 405

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  186 bits (476), Expect = 2e-53
 Identities = 110/463 (23%), Positives = 173/463 (37%), Gaps = 124/463 (26%)

Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
                +A+R P+   L       G+      LTY E+ + + RF + ++  GV  GDR  
Sbjct: 3   DLLERAARRFPDRPAL----TFFGRK-----LTYAELDELSDRFAAYLQQLGVKKGDRVA 53

Query: 107 IYGSNCPEWIIAMEACNSQAITYV-----PLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
           +   NCP++ IA           V     PLY       +E  +N +   +  V      
Sbjct: 54  LMLPNCPQFPIAYFGI--LKAGAVVVPVNPLYT---PRELEHQLNDSGAKVLIV------ 102

Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
                                                 S+E+ L  G            +
Sbjct: 103 ------------------------------------AISFEDALASGAPLPLPVELSPDD 126

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           ++ + YT GTTG PKG +LT++ +VA   +V Q+      +   ED + + LPL HI+  
Sbjct: 127 LAVLQYTGGTTGVPKGAMLTHRNLVA---NVQQIAAWVKDLREGEDRFLTALPLFHIFGL 183

Query: 282 IIET-HCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
            +     +  G +           ++++I+  + T+F GVP     +Y  + N       
Sbjct: 184 TVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPT----LYNALLN------- 232

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
                                      P      FS +R          +SG APLP+ V
Sbjct: 233 --------------------------HPEFKKYDFSSLRLC--------ISGGAPLPVEV 258

Query: 400 -EEFLRVTSGAPLTQGYGLTE-SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY 457
            E F   T GAPL +GYGLTE S       L       G++G+P+   E ++        
Sbjct: 259 AERFEEKT-GAPLVEGYGLTETSPVTTVNPLDGE-RKPGSIGLPLPGTEVKIVD------ 310

Query: 458 DALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
           D  + +P    GE+ +RG  +  GY+ RP+ T EV+ DGW  T
Sbjct: 311 DEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEVLTDGWLRT 353

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  171 bits (436), Expect = 9e-48
 Identities = 98/424 (23%), Positives = 162/424 (38%), Gaps = 62/424 (14%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LT+ ++   A+R    +R  G+  GD   +   N  E+      C +          +  
Sbjct: 11  LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +   +  ++  + F   +++  +     +    +  I+       S       +   
Sbjct: 71  PDELAHQLKISKPKLIFCDPDELDKVKEAA-KELGPVVRIIVL----DSAPDGVLRIED- 124

Query: 198 CFSWEEFLQLGTLDCELPPK-KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
               E  L         P    K + + ++Y+SGTTG PKGV+L+++ I+A +  V    
Sbjct: 125 --LLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTL 182

Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC-SIGFWRGDVRYLMEDIQELKPTM 315
              G   S  D   +FLP  H Y        +  G   I   + D    ++ I++ K T 
Sbjct: 183 --KGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKVTS 240

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
              VP +                AL+K                       +PL+D    S
Sbjct: 241 LFLVPPIAV--------------ALAK-----------------------SPLVDKYDLS 263

Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRV-TSGAPLTQGYGLTESCSGCFTSLADVFNM 434
            +R  F        SGAAPL   ++E LR       + QGYG+TE+      +       
Sbjct: 264 SLRVIF--------SGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPG-DEK 314

Query: 435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DG 493
            G+VG  +  VEA++  V E G  +L    RGE+C++G  +  GY   P+ T+E I  DG
Sbjct: 315 PGSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDG 372

Query: 494 WFHT 497
           W HT
Sbjct: 373 WLHT 376

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  169 bits (432), Expect = 7e-47
 Identities = 107/437 (24%), Positives = 171/437 (39%), Gaps = 88/437 (20%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           TY E+ +   R  +A+R+ GV  GDR  ++  N  E++ A  A         P+   L  
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
             + +I+N AE  +  V    +P + + LP+        V    V       A  L    
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLLAAILPQL-----PTVRTVIVEGD--GPAAPLAPEV 145

Query: 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV 258
             +EE L   +   + P   + + + ++YTSGTTG PKGVVL+++ +    L+V     +
Sbjct: 146 GEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKL 205

Query: 259 TGKVCSEEDTYFSFLPLAHIYDQIIETHC----IHKGCSI---GFWRGDVRYLMEDIQEL 311
           +      +D Y   +P+ H++            +  G         R D   L++ I+  
Sbjct: 206 S-----RDDVYLVIVPMFHVH----AWGLPYLALMAGAKQVIPR--RFDPENLLDLIETE 254

Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
           + T F  VP ++                                M   + +   A  +D 
Sbjct: 255 RVTFFFAVPTIW-------------------------------QM---LLKAPRAYFVD- 279

Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGLTESCS-GCFTSLA 429
             FS +R         ++ G A LP   + EF     G  L QGYG+TE+          
Sbjct: 280 --FSSLRL--------VIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPE 328

Query: 430 D----VFNMIGTVGVPMTTVEARL-----ESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           D     +    + G P+  VEAR+     + +P  G +       GEI +RG  L  GY+
Sbjct: 329 DQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEV------GEIIVRGPWLMQGYW 382

Query: 481 KRPDLTEEVIVDGWFHT 497
            RP+ T E I  GW HT
Sbjct: 383 NRPEATAETIDGGWLHT 399

Length = 521

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  167 bits (426), Expect = 5e-46
 Identities = 106/445 (23%), Positives = 165/445 (37%), Gaps = 104/445 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+     R  +A+ + G+  GDR  I+  N P W+IA           VPL     
Sbjct: 31  LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90

Query: 138 ANAVEFIINHAEVSIAFVQENKIP---SILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
           A+   +I+   +    FV    +    S  + LP     L+ +V        + +E +  
Sbjct: 91  ADEAAYILARGDAKALFVLGLFLGVDYSATTRLPA----LEHVVIC------ETEEDDPH 140

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT------NQAIVAE 248
                ++ +FL  G      P     +++ I++TSGTTG PKG +LT      N A  AE
Sbjct: 141 TEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAE 200

Query: 249 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--------- 299
            L +            E D Y +  P  H++           G +    RG         
Sbjct: 201 YLGLT-----------EGDRYLAANPFFHVF-------GYKAGVNAPLMRGATILPLPVF 242

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
           D   +   I+  + T+  G P +Y+ +                                 
Sbjct: 243 DPDEVFRLIETERITVLPGPPTMYNSLL-------------------------------- 270

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP---IH-VEEFLRVTSGAPLTQGY 415
                  P   +   S +R A        ++GAA +P   +   E  L V     +  GY
Sbjct: 271 -----QHPDRSAEDLSSLRLA--------VTGAASMPVALLERFESELGVDI---VLTGY 314

Query: 416 GLTESCS-GCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN 473
           GL+E+     F  L D    + GT+G  +  VE ++  V E+G +       GE+ +RG 
Sbjct: 315 GLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELGEEVPVGEV-GELLVRGP 371

Query: 474 TLFSGYYKRPDLTEEVI-VDGWFHT 497
            +  GYY  P+ T   I  DGW HT
Sbjct: 372 NVMKGYYDDPEATAAAIDADGWLHT 396

Length = 513

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  159 bits (405), Expect = 3e-42
 Identities = 89/315 (28%), Positives = 167/315 (53%), Gaps = 17/315 (5%)

Query: 188 KKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
           K++A++LG+S   +++  +  T + ++  +    I++I+YTSGT+G+PKGV+L+N+ +  
Sbjct: 272 KEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYN 331

Query: 248 EVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME 306
            V+ +                T+ S+LP++HIY+++I       G +I  W  D+ Y  +
Sbjct: 332 TVVPLCKHSIFKKYNP----KTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387

Query: 307 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA 366
           DI   K  + +GVP+V++RIYT I  +I++   L + L +   + +  N   G  +    
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSK---- 443

Query: 367 PLLDSL--VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 424
             L+ +  + SKI++     L+ +L+G   L   + E L V       QGYGLTE+    
Sbjct: 444 -FLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPI 502

Query: 425 FTSLADVFNMIGTVGVPMT-TVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
           F   AD  N   ++G P++   + ++ +     Y A  ++P+GE+ ++ +++FSGY+   
Sbjct: 503 FVQHADDNNT-ESIGGPISPNTKYKVRTWET--YKATDTLPKGELLIKSDSIFSGYFLEK 559

Query: 484 DLTEEVIV-DGWFHT 497
           + T+     DG+F T
Sbjct: 560 EQTKNAFTEDGYFKT 574

Length = 746

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  131 bits (331), Expect = 5e-34
 Identities = 72/285 (25%), Positives = 108/285 (37%), Gaps = 69/285 (24%)

Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QI 282
            I YTSGTTG PKG +LT++ ++    S+ +   +T     E D     +PL H++   +
Sbjct: 6   LIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLT-----EGDRTLVPVPLFHVFGLVL 60

Query: 283 IETHCIHKGCSI---GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
                +  G ++     +  D    +  I+  + T   GVP ++  +             
Sbjct: 61  GVLASLTAGATLVLMEKF--DPGAALRLIERERITALHGVPTMFIALLE----------- 107

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI-H 398
                                      P  D    S +R          +SG AP+P   
Sbjct: 108 --------------------------HPDFDKFDLSSLR--------TGISGGAPVPPEL 133

Query: 399 VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM--IGTVGVPMTTVEARLESVPEMG 456
           V         A +T GYG+TE+      +  D       GTVG P+  VE ++       
Sbjct: 134 VRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVD----- 188

Query: 457 YDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
                 VP    GEIC+RG ++  GYY  P+ T E I  DGW HT
Sbjct: 189 -PDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHT 232

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  128 bits (325), Expect = 3e-33
 Identities = 75/278 (26%), Positives = 120/278 (43%), Gaps = 61/278 (21%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           I+YTSGTTG PKGV+LT++ ++A  ++        G   S  D Y    PL H    +  
Sbjct: 6   ILYTSGTTGRPKGVMLTHRNLLANAVNALA-----GVDLSPGDVYLLAAPLYHAAGGLFL 60

Query: 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
              +  G ++      D   +++ I+  + T    VP ++ R+                +
Sbjct: 61  LPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLL---------------R 105

Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 403
           L +FA  Y L +++                              ++ GAAP+P  ++  +
Sbjct: 106 LPDFA-RYDLSSLRL-----------------------------IIYGAAPMPAELKRAM 135

Query: 404 RVTSGAPLTQGYGLTESCSGCF-TSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS 462
               G    QGYG+TE+       S  D    +G+VG P+  VE R+  V E G +    
Sbjct: 136 IEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRI--VDEDGRE---- 189

Query: 463 VPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
           +P    GEI +RG  + +GY+ RP+ T E + DGW HT
Sbjct: 190 LPPGEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLHT 227

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  128 bits (324), Expect = 7e-32
 Identities = 126/464 (27%), Positives = 190/464 (40%), Gaps = 118/464 (25%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLYDT 135
           TY E+     R  + +R+ GV PGDR  I   NCP+ I+A  A        V   PLY T
Sbjct: 59  TYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLY-T 117

Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ-------- 187
                  F  + A V+I +   +K+   +  L R    L+TIVS  N+ ++         
Sbjct: 118 AHELEHPFEDHGARVAIVW---DKVAPTVERLRRT-TPLETIVS-VNMIAAMPLLQRLAL 172

Query: 188 -------KKEAEELGVSC---FSWEEFLQ---LGTLDCELPPK-KKTNISTIMYTSGTTG 233
                  +K    L         WE  +     G       P+    +++ I+YTSGTTG
Sbjct: 173 RLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTG 232

Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGK-----VCSEEDTYFSFLPLAHIYDQIIETHCI 288
           +PKG  LT++ + A            GK     +    +   + LP+ H Y     T C+
Sbjct: 233 KPKGAQLTHRNLFANAAQ--------GKAWVPGLGDGPERVLAALPMFHAYGL---TLCL 281

Query: 289 HKGCSIG-----FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
               SIG         D+  +++ +++  PT   GVP +Y++I              +++
Sbjct: 282 TLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIA-----------EAAEE 330

Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH-VEEF 402
                         +G+              S +R AF        SGA  LP+  VE +
Sbjct: 331 --------------RGVD------------LSGVRNAF--------SGAMALPVSTVELW 356

Query: 403 LRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI------GTVGVPMTTVEARLESVPEMG 456
            ++T G  L +GYGLTE      TS   V N +      G VGVP    E R+   PE  
Sbjct: 357 EKLTGGL-LVEGYGLTE------TSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PE-- 406

Query: 457 YDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
            D   ++P    GE+ +RG  +F GY+ RP+ T +  +DGWF T
Sbjct: 407 -DPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRT 449

Length = 573

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  125 bits (316), Expect = 4e-31
 Identities = 101/428 (23%), Positives = 158/428 (36%), Gaps = 78/428 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+     R  + + +RG   GD   +   N  E+ +   A  S             
Sbjct: 33  LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYT 92

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +   +  +   +A         +   L    L L+ +V                  S
Sbjct: 93  PAEIAKQVKDSGAKLAITT----SELAEKLAS--LALEPVVLLD----------SADDGS 136

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
               +  L     +  +   K+ +++ + Y+SGTTG  KGV+LT++ ++A   +V Q+  
Sbjct: 137 AAIDDL-LFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIA---NVAQLVA 192

Query: 258 VTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSI----GFWRGDVRYLMEDIQELK 312
             G     ED     LP+ HIY   +I    +  G ++     F   D+   +  I++ K
Sbjct: 193 GEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRF---DLEKFLAAIEKYK 249

Query: 313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372
            T    VP +                AL K                        P++D  
Sbjct: 250 VTHLPVVPPIV--------------LALVKH-----------------------PIVDKY 272

Query: 373 VFSKIREAFGGRLQAMLSGAAPLPIHVEE-FLRVTSGAPLTQGYGLTESCSGCFTSLADV 431
             S         L+ + SGAAPL   + E F     G  L QGYG+TES           
Sbjct: 273 DLSS--------LKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPE 324

Query: 432 FNM-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490
            +   G+VG  +  VEA++   PE G ++L     GE+ +RG  +  GY   P+ T E I
Sbjct: 325 KDPKPGSVGRLVPNVEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETI 382

Query: 491 V-DGWFHT 497
             DGW HT
Sbjct: 383 DKDGWLHT 390

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  121 bits (305), Expect = 1e-30
 Identities = 75/287 (26%), Positives = 117/287 (40%), Gaps = 69/287 (24%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH--- 277
           + + I+YTSGTTG+PKGVVL+++ ++A   ++ Q   +T     E D   S LPL H   
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLT-----EGDVLLSVLPLFHVVG 55

Query: 278 ----IYDQIIE--THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 331
               +   ++   T  +++G             +E I++ + T+  GVP +YD       
Sbjct: 56  GGSGLLGALLAGGTVVLYEG------FPFPLSFLELIEQYRVTVLFGVPTLYDA------ 103

Query: 332 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG 391
                                               L  +        +    L+ ++SG
Sbjct: 104 ------------------------------------LAKAAEDRGYDLS---SLRLLISG 124

Query: 392 AAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLES 451
             PL   + E      GAP+ +GYGLTE+     T+        GTVG P+  VE R+  
Sbjct: 125 GEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV-- 182

Query: 452 VPEMGYDALSSVPRGEICLRGNTLFSGYYKR-PDLTEEVIVDGWFHT 497
           V E G   L     GE+ +RG  +  GY+   P+ T     DGW+ T
Sbjct: 183 VDEEG-KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRT 228

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  124 bits (313), Expect = 1e-30
 Identities = 88/434 (20%), Positives = 142/434 (32%), Gaps = 88/434 (20%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY ++     R  +A++  G   GDR  IY  N PE +IA+ A          +   L 
Sbjct: 41  LTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLS 100

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV--SSSQKKEAEELG 195
           A AV   I      +    +                 K I    +     S       LG
Sbjct: 101 AEAVADRIADLGPKVLIADD-------GTFRN----GKEIALLEDADAVLSSVVVVPRLG 149

Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM 255
                ++E ++  +   E  P    +   ++YTSGTTG+PKG+V ++   + E       
Sbjct: 150 ---LWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRL-TAK 205

Query: 256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI----HKGCSIGFWRGDVRY----LMED 307
           F          D +++      IY      + +      G +   + G   Y    L E 
Sbjct: 206 FHGDLL---PGDRFWNSSDPGWIYGL---WYSVFSPLASGATTVLYDGRPFYSPERLWEA 259

Query: 308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
           +++ K T+F   P    R+                             MK G+       
Sbjct: 260 LEKYKVTIFGTSPTFLRRL-----------------------------MKLGLG------ 284

Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427
             +    S +R         + S   PL     E+     G  +   YG TE+  G    
Sbjct: 285 --EPYDLSSLR--------VLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAG 334

Query: 428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP--RGEICLRGNT--LFSGYYKRP 483
              V N  G+ G+P+     R         D  + VP   GE+ +R     +   Y+  P
Sbjct: 335 RPPVKN--GSSGLPLPGYAVRRV------DDEGNPVPPGVGELVVRLPWPGMALTYWNDP 386

Query: 484 DLTEEVIVDGWFHT 497
           +  +E     W+ T
Sbjct: 387 ERYKEAYFGRWYRT 400

Length = 528

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  121 bits (307), Expect = 3e-30
 Identities = 86/286 (30%), Positives = 122/286 (42%), Gaps = 65/286 (22%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           + + I+YTSGTTG PKGVVLT+  + A   ++ + +  T       D     LPL H++ 
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWT-----ASDVLLHALPLHHVHG 143

Query: 281 QIIETHCIH-KGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG 338
                HC    G S+ F  R D +         + T+F GVP +Y R             
Sbjct: 144 LFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTR------------- 190

Query: 339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH 398
                                        LL+   F     A    L+  +SG+A LP+ 
Sbjct: 191 -----------------------------LLEHYEFDDAAAAAARNLRLFVSGSAALPVP 221

Query: 399 V-EEFLRVTSGAPLTQGYGLTESCSGCFTSLA-----DVFNMIGTVGVPMTTVEARLESV 452
           V E +   T G  L + YG+TE      T +A     D     GTVG+P+  VE R+  V
Sbjct: 222 VLERWEERT-GHTLLERYGMTE------TGMALSNPLDGERRPGTVGLPLPGVEVRI--V 272

Query: 453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
            E G + L++   GEI +RG  +FS Y+ +P+ T E    DGWF T
Sbjct: 273 DEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKT 318

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  123 bits (310), Expect = 4e-30
 Identities = 119/453 (26%), Positives = 169/453 (37%), Gaps = 112/453 (24%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA----CNSQAITYVPLYD 134
           TY+E YD   R  SA+   G+  GD   +   N P     +EA      + A+  VPL  
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPA---MLEAHFGVPMAGAV-LVPLNT 86

Query: 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
            L A+ + FI+NH+E  + FV +  +      L    L  K I+    +  S   E  E 
Sbjct: 87  RLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL--LSTKEIIDTEIIVISPAAEDSEE 144

Query: 195 GVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
           G     +E+ L  G  D   +PP  + +  ++ YTSGTTG PKGVV T++      L   
Sbjct: 145 G----DYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNV 200

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHI--------YDQIIETH-CIHKGCSIGFWRGDVRY- 303
             + +          Y   LP+ H            +  TH C+ K          V   
Sbjct: 201 IEWGMPD-----RPVYLWTLPMFHCNGWCFPWAITAVGGTHVCLRK----------VDAP 245

Query: 304 -LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362
            + + I++ K T   G P V                                NM    P+
Sbjct: 246 AIYDLIEKHKVTHLCGAPTVL-------------------------------NMLANAPE 274

Query: 363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESC 421
               P                 ++ M +GA P P  V    ++   G  +T  YGLTE  
Sbjct: 275 ADKLP-------------LPRPVRVMTAGAPP-PPAV--IKKMEELGFEVTHVYGLTE-T 317

Query: 422 SGCFT-----------SLADVFNMIGTVGVPMTTVEARLESV-PEMGYDALSSVPR---- 465
            G  T              +   +    GV    +E  ++ V PE   D    VPR    
Sbjct: 318 YGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEE-VDVVDPETMKD----VPRDGKT 372

Query: 466 -GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
            GEI +RGNT+  GYYK P+ TEE    GWFH+
Sbjct: 373 IGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHS 405

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  117 bits (295), Expect = 9e-29
 Identities = 97/434 (22%), Positives = 145/434 (33%), Gaps = 157/434 (36%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LT+QE+     +    + + GV  GDR  +   N  E+++   A              L 
Sbjct: 2   LTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLAL-------------LR 48

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
             AV   +N                    LP+                      EE    
Sbjct: 49  LGAVVLPLNPR------------------LPQ----------------------EE---- 64

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
               ++ L     D +         +TI++TSG+TG+PK VV T    +A      +   
Sbjct: 65  ---LQQQLADLQPDLD-------RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG 114

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-------------DVRYL 304
           +T      +D +   LPL H+            G +I   R              D   +
Sbjct: 115 LT-----PDDNWLLSLPLFHV-----------SGLAI-VMRSLLAGGALVLPDKFDAEAI 157

Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
            E ++    T  S VP    R+       + S GA                       + 
Sbjct: 158 AEALENHGVTHISLVPTQLQRL-------LESLGA-------------------RWLSS- 190

Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 424
                               L+A+L G AP+P  + E  R   G PL   YG+TE+ S  
Sbjct: 191 --------------------LRAVLLGGAPIPPSLLEQAR-QRGIPLYPTYGMTETASQV 229

Query: 425 FTSLADVF-NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
            T   D F   +G+VG P+   E R+ +  +           GEI +RG +LF GY  + 
Sbjct: 230 ATLKPDDFLAKLGSVGKPLPGRELRIVNPQD-----------GEILVRGPSLFLGYLPQG 278

Query: 484 DLTEEVIVDGWFHT 497
            LT  +  DGWFHT
Sbjct: 279 GLTPPLDEDGWFHT 292

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  116 bits (291), Expect = 1e-27
 Identities = 112/440 (25%), Positives = 185/440 (42%), Gaps = 74/440 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA---CNSQAITYVPLYD 134
           +T+   +D   RF + ++  GV  GDR  I   NCP+ +I            +   PLY 
Sbjct: 50  ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109

Query: 135 TLGANAVEFIINHAEVSIAFVQE---NKIPSILSCLPRCCLYLKTIVSFANVSSS----- 186
                 +E+ ++ +   +    +    ++ ++ S      + +  I  F     +     
Sbjct: 110 E---RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPF 166

Query: 187 -QKKEAE-----ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            QKK++          +   W    +      E+P   + +++ + YT GTTG PKGV+L
Sbjct: 167 VQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVML 226

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSE-EDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFW- 297
           T++ +V+  L    M V     C E E+     LP  H+Y    +    I +G  +    
Sbjct: 227 THKNLVSNTL----MGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIP 282

Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357
           + D++ + E I++ K T+F G P     IY  + N                         
Sbjct: 283 KFDMKMVFEAIKKHKVTLFPGAPT----IYIALLN------------------------- 313

Query: 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGL 417
                   +PLL     S IR        A +SG+APLP+ V+E     +G  L +GYGL
Sbjct: 314 --------SPLLKEYDISSIR--------ACISGSAPLPVEVQEKFETVTGGKLVEGYGL 357

Query: 418 TESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS 477
           TES     ++      + G++GVP    EA + S+ E G +AL     GEI ++G  +  
Sbjct: 358 TESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQIMK 415

Query: 478 GYYKRPDLTEEVIVDGWFHT 497
           GY+ +P+ T  V+ DGW HT
Sbjct: 416 GYWNKPEETAAVLQDGWLHT 435

Length = 563

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  114 bits (286), Expect = 2e-27
 Identities = 90/428 (21%), Positives = 156/428 (36%), Gaps = 113/428 (26%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           T+Q++   A     A++++G+  G R  + G N  E ++ + AC             L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHAC-------------LLL 47

Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
            A   ++N        + EN+  + L  L          V               L  S 
Sbjct: 48  GAEIAMLNTR------LTENERTNQLEDLD---------VQLL------------LTDSL 80

Query: 199 FSWEEFLQLGTLDCELPPKKKTNIS---------TIMYTSGTTGEPKGVVLTNQAIVAEV 249
              ++F        E   + +T++S         T+M+TSGTTG+PK V  T +   A  
Sbjct: 81  LEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASA 140

Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQ 309
           +   +    T     E+D +   LPL HI    I    + +G ++       + L+E I 
Sbjct: 141 VGSKENLGFT-----EDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQ-LLEMIA 194

Query: 310 ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369
             + T  S VP   +R+                             + +G          
Sbjct: 195 NERVTHISLVPTQLNRL-----------------------------LDEGGHNE------ 219

Query: 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA 429
                          L+ +L G + +P  + E  +   G P+   YG+TE+CS   T+  
Sbjct: 220 --------------NLRKILLGGSAIPAPLIEEAQ-QYGLPIYLSYGMTETCSQVTTATP 264

Query: 430 DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV 489
           ++ +    VG P+   E +++   + G+        GEI ++G  L  GY  + +LT   
Sbjct: 265 EMLHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPAF 316

Query: 490 IVDGWFHT 497
              GWF+T
Sbjct: 317 EQQGWFNT 324

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  110 bits (276), Expect = 8e-26
 Identities = 108/428 (25%), Positives = 164/428 (38%), Gaps = 97/428 (22%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +T+ E+++A +     + + GV  GDR  +   N  E I+ + A        V L   L 
Sbjct: 28  VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + + ++ AEV      ++             L     V FA + +  K+EAE     
Sbjct: 88  REELLWQLDDAEVKCLITDDDFEAK---------LIPGISVKFAELMNGPKEEAEIQ--- 135

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT--NQAIVAEVLSVDQM 255
               EEF     LD          ++TIMYTSGTTG+PKGV+ T  N    A V S   +
Sbjct: 136 ----EEF----DLD---------EVATIMYTSGTTGKPKGVIQTYGNHWWSA-VGSALNL 177

Query: 256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQEL 311
            +      +E+D + + +P+ HI    I    +  G  +     F   D   + + +Q  
Sbjct: 178 GL------TEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKF---DAEKINKLLQTG 228

Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
             T+ S V  +  R              L ++L E  Y      M           LL  
Sbjct: 229 GVTIISVVSTMLQR--------------LLERLGEGTYPSSFRCM-----------LL-- 261

Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT-SLAD 430
                     GG       G AP P+  +   +   G P+ Q YG+TE+ S   T S  D
Sbjct: 262 ----------GG-------GPAPKPLLEQCKEK---GIPVYQSYGMTETASQIVTLSPED 301

Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490
               +G+ G P+   E ++E         +     GEI ++G  +  GY  R D T E  
Sbjct: 302 ALTKLGSAGKPLFPCELKIEK----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF 357

Query: 491 VDGWFHTE 498
            DGWF T 
Sbjct: 358 QDGWFKTG 365

Length = 483

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  109 bits (274), Expect = 1e-25
 Identities = 92/434 (21%), Positives = 160/434 (36%), Gaps = 100/434 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           +TY+++++   +  + +     V  G+R  I   N  E+I+ + A        VPL   L
Sbjct: 28  MTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRL 87

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS-QKKEAEELG 195
             N + F +  +  ++ FV++                     +F N++ S QK    +  
Sbjct: 88  TENELIFQLKDSGTTVLFVEK---------------------TFQNMALSMQKVSYVQRV 126

Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI----VAEVLS 251
           +S  S +E       +     +  + I  I YTSGTTG+PKG VLT + +    +    +
Sbjct: 127 ISITSLKEIEDRKIDNFVEKNESASFI--ICYTSGTTGKPKGAVLTQENMFWNALNNTFA 184

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET--HCIHKGCSIGFWRGDVRYLMEDIQ 309
           +D          +  D     LPL HI    +         G  I   + +    +  I+
Sbjct: 185 ID---------LTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIE 235

Query: 310 ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369
           + K T+  GVP ++  +                                           
Sbjct: 236 KHKVTVVMGVPTIHQAL-------------------------------------INCSKF 258

Query: 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGLTESCSGCFTS 427
           ++     +R  +        +G AP P   EE +R  +  G    QG+G+TE+    F  
Sbjct: 259 ETTNLQSVRWFY--------NGGAPCP---EELMREFIDRGFLFGQGFGMTETSPTVFML 307

Query: 428 LADVF-NMIGTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRP 483
             +     +G++G P+   +  L        +  + V     GE+ +RG  +   Y+ RP
Sbjct: 308 SEEDARRKVGSIGKPVLFCDYELID------ENKNKVEVGEVGELLIRGPNVMKEYWNRP 361

Query: 484 DLTEEVIVDGWFHT 497
           D TEE I DGW  T
Sbjct: 362 DATEETIQDGWLCT 375

Length = 496

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  105 bits (265), Expect = 2e-24
 Identities = 81/285 (28%), Positives = 120/285 (42%), Gaps = 75/285 (26%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           I+YTSGTTG PKGVVL+ +AI A++ ++ + +  T      +D     LPL H++  ++ 
Sbjct: 133 IVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTA-----DDVLVHGLPLFHVHGLVLG 187

Query: 285 THCIHKGCSIGFWR--GDVRYLMEDIQE-------LKPTMFSGVPRVYDRIYTGISNKIS 335
                    +G  R      +      E          T++ GVP V+ RI    +    
Sbjct: 188 V--------LGPLRIGNRFVHTGRPTPEAYAQALSEGGTLYFGVPTVWSRI----AADPE 235

Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
           +  AL                                         G RL  ++SG+A L
Sbjct: 236 AARALR----------------------------------------GARL--LVSGSAAL 253

Query: 396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL--ESVP 453
           P+ V + L   +G    + YG+TE+     ++ AD     G VG+P+  VE RL  E   
Sbjct: 254 PVPVFDRLAALTGHRPVERYGMTETLITL-STRADGERRPGWVGLPLAGVETRLVDEDGG 312

Query: 454 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
            + +D   +V  GE+ +RG TLF GY  RPD T      DGWF T
Sbjct: 313 PVPHDG-ETV--GELQVRGPTLFDGYLNRPDATAAAFTADGWFRT 354

Length = 471

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  104 bits (262), Expect = 3e-24
 Identities = 104/441 (23%), Positives = 159/441 (36%), Gaps = 118/441 (26%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           W TY E+     R  + +R RG   G+R  +   N    +    AC      YVPL   L
Sbjct: 23  W-TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
            A+ ++ ++  AE     +  +   +                  A   +S          
Sbjct: 82  SASELDALLQDAEP--RLLLGDDAVAAGRTDV---------EDLAAFIASADALEPADTP 130

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
           S                +PP++   +S I++TSGT+G+PKGV+L+ + +     +    F
Sbjct: 131 S----------------IPPER---VSLILFTSGTSGQPKGVMLSERNLQQTAHN----F 167

Query: 257 VVTGKVCSEEDTYFSFL---PLAHIYDQI--IETHCIHKGC---SIGF-------WRGDV 301
            V G+V    D + SFL   P+ HI   I  +       G    S GF         GD 
Sbjct: 168 GVLGRV----DAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGD- 222

Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
                    L  T +  VP++                                   +  P
Sbjct: 223 -------PALGITHYFCVPQMAQAF-------------------------------RAQP 244

Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGLTE 419
              AA L                L A+ +G AP   H  E +   +  G P+  G+G++E
Sbjct: 245 GFDAAAL--------------RHLTALFTGGAP---HAAEDILGWLDDGIPMVDGFGMSE 287

Query: 420 SCS--GCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS 477
           + +  G       +    G  G+P  TV+ R+  V + G D  + VP GE+ LRG  L  
Sbjct: 288 AGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRV--VDDQGNDCPAGVP-GELLLRGPNLSP 344

Query: 478 GYYKRPDLTEEVIV-DGWFHT 497
           GY++RP  T      DGWF T
Sbjct: 345 GYWRRPQATARAFTGDGWFRT 365

Length = 488

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  101 bits (253), Expect = 1e-23
 Identities = 75/287 (26%), Positives = 115/287 (40%), Gaps = 78/287 (27%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           I++TSGTTG PKGV LT++ ++A   ++ +   +T       D   + +PL HI+  I+ 
Sbjct: 7   ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLT-----PSDRCLNVMPLFHIHGLIVS 61

Query: 285 T-HCIHKGCSI---------GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 334
               +  G S+          FW        +DI + + T +S VP              
Sbjct: 62  LLATLLAGGSVVCPPKFSASKFW--------DDIAKYRVTWYSAVP-------------- 99

Query: 335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP 394
                + + L + A         K  P          L F  IR           S +AP
Sbjct: 100 ----TIHQILLKTA---------KPNPGKPPP----RLRF--IR-----------SASAP 129

Query: 395 LPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS-LADVFNMIGTVGVPMTTVEARLESVP 453
           LP  V + L    G P+ + YG+TE+     ++ L  +    G+VG P   VE  +    
Sbjct: 130 LPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRP-AGVEVAI---- 184

Query: 454 EMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
            +  D    +P    GEI +RG  + +GY   P+   E   DGWF T
Sbjct: 185 -LD-DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRT 229

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 97.3 bits (243), Expect = 1e-21
 Identities = 67/293 (22%), Positives = 106/293 (36%), Gaps = 68/293 (23%)

Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
           L   K  + + I++TSG+ G PKGVVL+++ ++A +  +  +        + ED     L
Sbjct: 139 LAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVID-----LNTEDVLLGAL 193

Query: 274 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELK------PTMFSGVPR-VYDRI 326
           PL H +           G ++          +  +  L+      P     +   + D  
Sbjct: 194 PLFHAF-----------GLTVTLL-------LPLLTGLRVVYYPNPLDAKKIAELIRDYK 235

Query: 327 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 386
            T +              F         N                  FS +R        
Sbjct: 236 ATIL---------CGTPTF---LRGYARNAHPED-------------FSSLRLVV----- 265

Query: 387 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVE 446
              +GA  LP    E      G  + +GYG TE CS   +    + N  GTVG P+  +E
Sbjct: 266 ---AGAEKLPEATRELFEEKFGIRILEGYGATE-CSPVISVNTPMGNKPGTVGRPLPGIE 321

Query: 447 ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--DGWFHT 497
            R+ S     ++ L     G + +RG  + SGY    + T EV V  DGW+ T
Sbjct: 322 VRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDT 372

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 97.3 bits (242), Expect = 2e-21
 Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 60/285 (21%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           +I+ + YT GTTG  KG +LT++ +VA +    Q    TGK+    +   + LPL HI+ 
Sbjct: 209 DIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFA 268

Query: 281 QIIETHCIHK--GCS--IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336
                    K  GC+  I   R D+   ++++++ + T F+GV    + ++ G+ N    
Sbjct: 269 LTANGLVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTAFTGV----NTLFNGLLN---- 319

Query: 337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 396
                                         P  D + FS ++   GG +    S A    
Sbjct: 320 -----------------------------TPGFDQIDFSSLKMTLGGGMAVQRSVA---- 346

Query: 397 IHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMG 456
              E + +VT G  L + YGLTE+      +   +    G++G+P+ + +A ++      
Sbjct: 347 ---ERWKQVT-GLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKD----- 397

Query: 457 YDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
            DA + +  GEI   C++G  +  GY+KRP+ T +V+  DGW HT
Sbjct: 398 -DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHT 441

Length = 560

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 93.0 bits (232), Expect = 2e-20
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS-QAITYVP 131
           G +  +T+ E+ +   R  + + + GV PGDR  I   N PEW+IA  A  +  A+  VP
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVP-VP 59

Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENK 159
           +Y T     V +I+N +   + FV E+K
Sbjct: 60  IYPTSSPEEVAYILNDSGARVVFV-EDK 86

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 93.5 bits (233), Expect = 3e-20
 Identities = 91/437 (20%), Positives = 147/437 (33%), Gaps = 96/437 (21%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ +   R+G+A+R  G+   +R  +   + PE+  A           VP+   L 
Sbjct: 31  LTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLT 90

Query: 138 ANAVEFIINHAEVSIAFVQE---NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
            +   + +N +   +  + E     +   L   P    +L+ ++               L
Sbjct: 91  PDDYRYYLNDSRARVLVISEELWEVLKPALQKDP----HLRHVI------VVGGAGPGAL 140

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVD 253
                S+ + +     + E       +++  +Y+SG+TG PKGVV  +  + V       
Sbjct: 141 -----SYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAK 195

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM-------- 305
            +  +T     E+D  FS   L   Y        +  G       G    LM        
Sbjct: 196 NVLGIT-----EDDVVFSAAKLFFAYG-------LGNGLYFPLSVGATTVLMPERPTPDA 243

Query: 306 --EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
               I+  KPT+F GVP +Y                                    M   
Sbjct: 244 VFATIERYKPTVFFGVPTLY----------------------------------AAMLAA 269

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
              P  D    S +R          +S    LP  +    +   G  +  G G TE    
Sbjct: 270 PEKPERD---LSSLR--------LCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHI 318

Query: 424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYY 480
             ++        GT G P+   E +L  V E G      V  GEI    +RG++  +GY+
Sbjct: 319 FLSNRPGAVKY-GTSGKPVPGYEVKL--VDEDG----EEVADGEIGELWVRGDSSAAGYW 371

Query: 481 KRPDLTEEVIVDGWFHT 497
            R + T E  V  W  T
Sbjct: 372 NRREKTRETFVGEWTRT 388

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 92.7 bits (231), Expect = 3e-20
 Identities = 80/281 (28%), Positives = 110/281 (39%), Gaps = 66/281 (23%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI--YDQI 282
           ++YTSGTTGEPKGV+ T+  ++AEV S  +   +T      +D      PLAHI  +   
Sbjct: 98  LLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLT-----PDDVVLMPSPLAHITGFLYG 152

Query: 283 IETHCIHKGCS-IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341
           +E   +  G + +   R D    +E I+E   T   G                       
Sbjct: 153 LEL-PLLLGATVVLQDRWDPARALELIREHGVTFTMGAT--------------------- 190

Query: 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP-IHVE 400
                F  +  L         + A P L SL             +  L G AP+P     
Sbjct: 191 ----PFLAD--LLAA-----ADAAGPDLPSL-------------RVFLCGGAPVPRELAR 226

Query: 401 EFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYDA 459
                  GA + + YG+TE       +  D  +    T G P+  VE R+  V + G D 
Sbjct: 227 RAAEAL-GAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGRPVPGVEVRI--VDDDGND- 282

Query: 460 LSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
              VP    GE+ +RG  LF GY   PD TE    DGWF T
Sbjct: 283 ---VPPGEEGELQVRGPQLFLGYLDPPDNTEAFTDDGWFRT 320

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 90.8 bits (226), Expect = 2e-19
 Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 35/211 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            TY E+  A  R  +A+   G+  GDR    G N   + +   AC      +VP+   L 
Sbjct: 37  WTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLT 96

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + +I++H+      V     P++                    ++      + L +S
Sbjct: 97  GEELAYILDHSGARAFLVD----PALAPTAE---------------AALALLPVDTLILS 137

Query: 198 CF--------SWEEFLQLGTLDCELPPKKKTNIST---IMYTSGTTGEPKGVVLTNQAIV 246
                      W +F           P  +        I+YTSGT   PKG +LT++A++
Sbjct: 138 LVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALI 197

Query: 247 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
           AE +S     +V G + S +D     LPL H
Sbjct: 198 AEYVSC----IVAGDM-SADDIPLHALPLYH 223

Length = 523

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 90.3 bits (225), Expect = 2e-19
 Identities = 61/225 (27%), Positives = 91/225 (40%), Gaps = 35/225 (15%)

Query: 67  VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126
           VS    G     TY + Y    R  +A+ S GV PGDR      N    +    A     
Sbjct: 15  VSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFA----- 69

Query: 127 ITYVPLYDTLGANAV-------------EFIINHAEVSIAFVQENKIPSILSCLPRCCLY 173
              VP     G  AV              +IINHAE  + FV ++ +P + +  PR    
Sbjct: 70  ---VP-----GMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRL--- 118

Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTG 233
             T+ +      +   E     V  +  EE L+  + + E P   +   + + YTSGTTG
Sbjct: 119 -PTVKAVVVYDDADMPETSLPNVYAY--EELLEEESPEYEWPELDENTAAGLCYTSGTTG 175

Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
            PKGVV +++++V   L+            SE DT    +P+ H+
Sbjct: 176 NPKGVVYSHRSLVLHTLASAL---PDSLGLSESDTVLPVVPMFHV 217

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 89.8 bits (223), Expect = 5e-19
 Identities = 114/465 (24%), Positives = 175/465 (37%), Gaps = 123/465 (26%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            T++++ DA  R    + + GV PGDR GI+  NC EW++   A        V +     
Sbjct: 46  YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105

Query: 138 ANAVEFIINHAEVS-------------IAFVQE------NKIPSILSC--LPRCCLYLKT 176
           A+ +E+ +  + V               A +QE         P  L+C  LP     L+ 
Sbjct: 106 ASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPE----LRG 161

Query: 177 IVSFANVSSS-----QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGT 231
           +VS A           + +A    VS  +  E  +  +LD + P         I YTSGT
Sbjct: 162 VVSLAPAPPPGFLAWHELQARGETVSREALAE--RQASLDRDDP-------INIQYTSGT 212

Query: 232 TGEPKGVVLT------NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
           TG PKG  L+      N   VAE L +           +E D     +PL H +  ++  
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGL-----------TEHDRLCVPVPLYHCFGMVLAN 261

Query: 286 -HCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK 342
             C+  G  + +     D    ++ ++E + T   GVP ++                   
Sbjct: 262 LGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF------------------- 302

Query: 343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF 402
            + E  +                 P   +   S +R          +   AP PI V   
Sbjct: 303 -IAELDH-----------------PQRGNFDLSSLRTG--------IMAGAPCPIEVMR- 335

Query: 403 LRVTSG---APLTQGYGLTESCSGCF-TSLADVFNM-IGTVGVPMTTVEARLESVPEMGY 457
            RV      A +   YG+TE+      T+ AD     + TVG     +E ++        
Sbjct: 336 -RVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKV-------V 387

Query: 458 DAL-SSVPRGEI---CLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
           D   ++VPRGEI   C RG ++  GY+  P+ T E I  DGW HT
Sbjct: 388 DPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHT 432

Length = 558

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 89.3 bits (222), Expect = 6e-19
 Identities = 118/464 (25%), Positives = 182/464 (39%), Gaps = 117/464 (25%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLY- 133
           +TY E+ + +    + ++SRG+  G R  I   N  ++ +A+ A        V   PLY 
Sbjct: 49  ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108

Query: 134 ---------DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLK-TIVSFANV 183
                    D+ GA A+  + N A      + +  +  ++       L  K  IV+F  V
Sbjct: 109 PRELEHQLKDS-GAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNF--V 165

Query: 184 SSSQKK--EAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
               KK   A  L      + + L  G     +       +++ + YT GTTG  KG  L
Sbjct: 166 VRRVKKMVPAWSLP-GHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATL 224

Query: 241 TNQAIVAEVLS--------------VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH 286
            ++ IVA VL                DQ+  V              LPL HI+     T 
Sbjct: 225 LHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCA------------LPLYHIFAL---TV 269

Query: 287 CIHKGCSIGFWRGDVRYLMED-------IQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
           C      +G   G    L+ +       I+ELK       P V + +Y  + N       
Sbjct: 270 C----GLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAV-NTLYNALLN------- 317

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
                                      P  D L FSK+  A GG + A+    A      
Sbjct: 318 --------------------------NPDFDKLDFSKLIVANGGGM-AVQRPVA------ 344

Query: 400 EEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY 457
           E +L +T G P+T+GYGL+E+   + C    A  F+  GT+G+P+ + E  +        
Sbjct: 345 ERWLEMT-GCPITEGYGLSETSPVATCNPVDATEFS--GTIGLPLPSTEVSIRD------ 395

Query: 458 DALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
           D  + +P G   EIC+RG  + +GY+ RPD T +V+  DG+F T
Sbjct: 396 DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRT 439

Length = 557

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 89.3 bits (222), Expect = 6e-19
 Identities = 115/444 (25%), Positives = 173/444 (38%), Gaps = 102/444 (22%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN---SQAITYVPLYD 134
            TY +V   + R  + +   G+  GD   +   NCPE+++A    +   +   T  P Y 
Sbjct: 51  YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFY- 109

Query: 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
                  E I   A+ S A     K+    SC      Y+  +   A          ++ 
Sbjct: 110 ----TPAE-IAKQAKASGA-----KLIITQSC------YVDKLKGLAEDDGVTVVTIDDP 153

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
              C  + E  Q    +         ++  + Y+SGTTG PKGV+LT++ +V    SV Q
Sbjct: 154 PEGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT---SVAQ 210

Query: 255 MFVVTGKV----CSEEDTYFSFLPLAHIYDQIIETHCI-----HKGCSIGFWRG-DVRYL 304
              V G+        +D     LP+ HIY      + +       G +I      ++  L
Sbjct: 211 Q--VDGENPNLYFHSDDVILCVLPMFHIY----SLNSVLLCGLRVGAAILIMPKFEIGAL 264

Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
           +E IQ  K T+   VP +                     +   A +              
Sbjct: 265 LELIQRHKVTIAPFVPPI---------------------VLAIAKS-------------- 289

Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTES--- 420
             P+++    S IR         +LSGAAPL   +E+  R     A L QGYG+TE+   
Sbjct: 290 --PVVEKYDLSSIR--------MVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPV 339

Query: 421 CSGCFTSLADVFNM-IGTVGVPMTTVE-ARLESV-PEMGYDALSSVPR---GEICLRGNT 474
            + C     + F +  G+ G   T V  A L+ V PE G    +S+PR   GEIC+RG  
Sbjct: 340 LAMCLAFAKEPFPVKSGSCG---TVVRNAELKIVDPETG----ASLPRNQPGEICIRGPQ 392

Query: 475 LFSGYYKRPDLTEEVI-VDGWFHT 497
           +  GY   P+ T   I  DGW HT
Sbjct: 393 IMKGYLNDPEATANTIDKDGWLHT 416

Length = 537

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 88.9 bits (220), Expect = 1e-18
 Identities = 88/451 (19%), Positives = 139/451 (30%), Gaps = 122/451 (27%)

Query: 72  VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
           V     LTY E+   A R    + S GV PG+   I      E ++A+ A       YVP
Sbjct: 247 VRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP 306

Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
           L     A  + +I+  +  ++   Q +     L         L    + + +  +     
Sbjct: 307 LDPLYPAERLAYILEDSRPTLLLTQAH-----LRVDDVGLPGLALDDALSEIPDTDPIPQ 361

Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
             LG                          ++ I+YTSG+TG+PKGV + ++A+   +  
Sbjct: 362 ALLG------------------------DALAYIIYTSGSTGQPKGVRIEHRALANLLND 397

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF--------WRGDVRY 303
               F +       +D   +   L+           I      G          + D   
Sbjct: 398 AGARFGLD-----ADDRVLALASLSF----DASVFEIFGALLEGARLVLAPALLQVDPAA 448

Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
           L+E ++    T+   VP                                L  +       
Sbjct: 449 LLELLEAQGITVLLLVP-------------------------------LLLRL------- 470

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV--EEFLRVTSGAPLTQGYGLTESC 421
               LL + +   +      RL+ +LSG   LP+ +             L   YG TE  
Sbjct: 471 ----LLLAALAPDLISP-CERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTE-- 523

Query: 422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY-----------DALSSVP---RGE 467
                          T+  P   + A LES   +G              L  +P    GE
Sbjct: 524 --------------ATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGE 569

Query: 468 ICLRGNTLFSGYYKRPDLTEE-VIVDGWFHT 497
           + + G  L  GY  RPDLT E  I    + T
Sbjct: 570 LYIAGLGLALGYLNRPDLTAERFIALRLYRT 600

Length = 642

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 10/217 (4%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY  + +  +   S +R  G+  G+R  IY     E + AM         +VP+   L 
Sbjct: 26  LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  V  I+    V +      ++  +   LP C      I+    V           G  
Sbjct: 86  AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLII----VGDPAHASEGHPGEE 141

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             SW + L LG  D    P   ++++ I+YTSG+TG PKGVVL+++ +VA   SV     
Sbjct: 142 PASWPKLLALGDAD-PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE 200

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI 294
                   +D   + LPL+  Y     T   + G ++
Sbjct: 201 NR-----PDDRLLAVLPLSFDYGFNQLTTAFYVGATV 232

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 85.5 bits (212), Expect = 6e-18
 Identities = 62/285 (21%), Positives = 100/285 (35%), Gaps = 71/285 (24%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           I YTSGTTG PKG + T++ ++A   +      +T      +    +FLPL H+      
Sbjct: 89  IPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLT-----PDSVLLAFLPLFHVAG---M 140

Query: 285 THCIHKGCSIG-----FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
              ++     G       R D       I+  + T ++ +                    
Sbjct: 141 QGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIV------------------- 181

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
                                       LL      +  +     L+ +  G A LP  V
Sbjct: 182 -----------------------TMVVDLLAHP---RFADYDLSSLKVVGGGGAALPPAV 215

Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR---LESVPEMG 456
            E L+  +G    +GYGLTE+ + C             +G+P+   +AR    E+  E+ 
Sbjct: 216 AERLKALTGLLYEEGYGLTETHT-CTHFNPPDRPKPQCLGIPVFGTDARVIDPETGEELP 274

Query: 457 YDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV----DGWFHT 497
                    GEI +RG  +F GY+ RP+ T E  +      +F T
Sbjct: 275 ---PGEE--GEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRT 314

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 84.2 bits (208), Expect = 3e-17
 Identities = 74/303 (24%), Positives = 123/303 (40%), Gaps = 54/303 (17%)

Query: 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 259
           ++ +F++      E P     +++ + YT GTTG PKG +LT+  + + V   D     +
Sbjct: 172 TYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPS 231

Query: 260 GKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFS 317
                + +     LPL HIY   +I    + +G  I    R DV  +  DI+E + T+F 
Sbjct: 232 RATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFP 291

Query: 318 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI 377
           GVP ++  +                                        P L+    S  
Sbjct: 292 GVPTMWIAL-------------------------------------ANDPSLEKRDLSS- 313

Query: 378 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT 437
                  L  + SG APLP+ V  F    +G  L  G+G+TE+CS       +  +  G+
Sbjct: 314 -------LATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGS 366

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPRGEIC---LRGNTLFSGYYKRPDLTEEVIVDGW 494
           +G+ +  +E  + S+     D    +P GE+    +RG  +  GY+ RP+ + E  V   
Sbjct: 367 IGLMLPGIELDVVSLD----DPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDR 422

Query: 495 FHT 497
           F T
Sbjct: 423 FLT 425

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 82.2 bits (204), Expect = 1e-16
 Identities = 110/460 (23%), Positives = 167/460 (36%), Gaps = 147/460 (31%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            TY ++  A+ R  + + + GV PGDR  +     PE +    A       ++PL     
Sbjct: 29  YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYT 88

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +++ I  AE           P+++ C P           FA +S    K A   G  
Sbjct: 89  LAELDYFIGDAE-----------PALVVCDPAN---------FAWLS----KIAAAAGAP 124

Query: 198 CFSWEEFLQLGTLDC-----------------ELPPKKKTNISTIMYTSGTTGEPKGVVL 240
                    + TLD                  E  P+   +++ I+YTSGTTG  KG +L
Sbjct: 125 --------HVETLDADGTGSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAML 176

Query: 241 T--NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI-HKGCSIGFW 297
           +  N    A  L     F       + +D     LP+ H +   + T+     G S+  +
Sbjct: 177 SHGNLLSNALTLVDYWRF-------TPDDVLIHALPIFHTHGLFVATNVALLAGASM-IF 228

Query: 298 RGDVRYLMEDIQELKP--TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355
               ++  + +  L P  T+  GVP  Y R                              
Sbjct: 229 LP--KFDPDAVLALMPRATVMMGVPTFYTR------------------------------ 256

Query: 356 MKKGMPQNKAAPLLDSLVFSKIREAFGG-RLQAMLSGAAPLPI--HVEEFLRVTSGAPLT 412
                       LL     +  REA    RL   +SG+APL    H E   R  +G  + 
Sbjct: 257 ------------LLQEPRLT--REAAAHMRL--FISGSAPLLAETHREFQER--TGHAIL 298

Query: 413 QGYGLTESCSGCFTSLADVFNMI-----------GTVGVPMTTVEARLESVPEMGYDALS 461
           + YG+TE+            NM            GTVG P+  V  R+   PE G    +
Sbjct: 299 ERYGMTET------------NMNTSNPYDGERRAGTVGFPLPGVSLRVTD-PETG----A 341

Query: 462 SVPRGEIC---LRGNTLFSGYYKRPDLT-EEVIVDGWFHT 497
            +P GEI    ++G  +F GY++ P+ T EE   DG+F T
Sbjct: 342 ELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFIT 381

Length = 504

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 65/286 (22%), Positives = 106/286 (37%), Gaps = 73/286 (25%)

Query: 228 TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET-H 286
           T GTTG PK    +++  VA       +  +        D   + LPL H+   I+    
Sbjct: 10  TGGTTGAPKLARHSHRNEVANAWMAALLSGLG-----PGDVLLNGLPLFHVGGAIVTGLA 64

Query: 287 CIHKGCSIGF-----WRGD--VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
            + +G ++       +R    V    + ++  + T+ S VP V                A
Sbjct: 65  PLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVL--------------AA 110

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
           L                          PL D+ + S +R          L+GAAPLP+ V
Sbjct: 111 L-----------------------LQVPLGDADI-SSLR--------YALTGAAPLPVEV 138

Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM--TTVE-ARLESVPEMG 456
                  +G P+ +GYG+TE       +        G+VG+ +  T V  A+L++   +G
Sbjct: 139 ARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALG 198

Query: 457 YDALSSVPRGEICLRGNTLFSGYYKRPDLTEE-----VIVDGWFHT 497
            D       G + +RG  +F GY     L +       + DGW +T
Sbjct: 199 RDCAPGEV-GVLAIRGPNVFPGY-----LNDAHNAGARLEDGWLNT 238

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 76.5 bits (189), Expect = 8e-15
 Identities = 68/299 (22%), Positives = 108/299 (36%), Gaps = 73/299 (24%)

Query: 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
            P    +++   +T GTTG PK    T+   VA       +  +        DT F  LP
Sbjct: 208 RPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLG-----PGDTVFCGLP 262

Query: 275 LAHIYDQI-IETHCIHKGCSIGF-----WRGD--VRYLMEDIQELKPTMFSGVPRVYDRI 326
           L H+   +      + +G  +       +RG   +    + ++  +    SGVP VY   
Sbjct: 263 LFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVY--- 319

Query: 327 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 386
                       AL +                 +P +     + SL ++           
Sbjct: 320 -----------AALLQ-----------------VPVD--GHDISSLRYA----------- 338

Query: 387 AMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTV 445
             L GAAPLP+ V   F   T G  + +GYGLTE+      +  D    IG+VG+ +   
Sbjct: 339 --LCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395

Query: 446 EARLESVPEMGYDALSSVPR--GEICLRGNTLFSGYYKRPDLTEE-----VIVDGWFHT 497
             R+  + + G           G +C+ G  +FSGY     L         + DGW +T
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGY-----LEAAHNKGLWLEDGWLNT 449

Length = 632

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 72/290 (24%), Positives = 123/290 (42%), Gaps = 73/290 (25%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           +++ + YT GTTG  KG +LT++ +VA +L    +  +   +    +   + LPL HIY 
Sbjct: 208 DVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRAL--MGSNLNEGCEILIAPLPLYHIY- 264

Query: 281 QIIETHCIHKGCSIGFWRGDVRYLMED-------IQELKPTMFSGVPRVYDRIYTGISNK 333
                   H  C      G+   L+ +       ++EL    FSG        + G++  
Sbjct: 265 ----AFTFH--CMAMMLIGNHNILISNPRDLPAMVKELGKWKFSG--------FVGLNT- 309

Query: 334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 393
                     LF              +  N+A   LD   FS         L+  LSG  
Sbjct: 310 ----------LF------------VALCNNEAFRKLD---FS--------ALKLTLSGGM 336

Query: 394 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-----MIGTVGVPMTTVEAR 448
            L +   E  +  +G  + +GYG+TE      TS     N      +GT+G+P+ +   +
Sbjct: 337 ALQLATAERWKEVTGCAICEGYGMTE------TSPVVSVNPSQAIQVGTIGIPVPSTLCK 390

Query: 449 LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
           +  + + G + L     GE+C++G  +  GY++RP+ T+E++  DGW  T
Sbjct: 391 V--IDDDGNE-LPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKT 437

Length = 562

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 29/200 (14%)

Query: 79  TYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           TY+E+ + A R    +R+  GV PGDR  +      E ++A+ A       YVPL     
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  + FI+  A   +       + S L+ L    + L  +   A   +      +     
Sbjct: 61  AERLAFILEDAGARLLLTDS-ALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGP 119

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
                                  +++ ++YTSG+TG PKGVV+T++++V  +  + + + 
Sbjct: 120 ----------------------DDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYG 157

Query: 258 VTGKVCSEEDTYFSFLPLAH 277
           +       +D    F  L+ 
Sbjct: 158 L-----DPDDRVLQFASLSF 172

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 73.9 bits (182), Expect = 4e-14
 Identities = 66/293 (22%), Positives = 99/293 (33%), Gaps = 84/293 (28%)

Query: 222 ISTIMYTSGTTGEPKGVV-------LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
           I+  +YTSGTTG+PKGV+          +A   E+L +              D  FS   
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGL-----------QPGDRIFSSSK 141

Query: 275 LAHIYDQIIETHCIHKGCSIGFW------RGDVRYLMEDIQELKPTMFSGVPRVYDRIYT 328
           L   Y      + +      G              +++ +   +PT+  GVP +Y     
Sbjct: 142 LFFAYGLG---NSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY----- 193

Query: 329 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 388
                +   GA S  LF                               +R          
Sbjct: 194 ---RALLESGAGSAPLF-----------------------------RSVRLCV------- 214

Query: 389 LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES----CSGCFTSLADVFNMIGTVGVPMTT 444
            S    LP  + E     +G  +  G G TE      S    +        GT G P+  
Sbjct: 215 -SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAAR-----PGTTGRPVPG 268

Query: 445 VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
            EARL  V E G +  +    G++ +RG +L  GY+  P+ T+  + DGW  T
Sbjct: 269 YEARL--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRT 318

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 73.8 bits (182), Expect = 6e-14
 Identities = 87/474 (18%), Positives = 147/474 (31%), Gaps = 145/474 (30%)

Query: 46  WQFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
                 +A R P+   +  G R+           LTY+E+  A  R  + + + G+ PGD
Sbjct: 18  GDLLAANAARHPDRTAVVDGPRR-----------LTYRELDAAVDRLAAGLLALGIGPGD 66

Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSI 163
           R  +   N  E++I   A        V       A+ +      +E + A++  ++    
Sbjct: 67  RVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSE-AKAYIIADRFSG- 124

Query: 164 LSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIS 223
                           +A ++    +E  ++           QL                
Sbjct: 125 --------------FDYAALARELLEELPDVA--------LFQL---------------- 146

Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV--TGKVC--SEEDTYFSFLPLAHIY 279
               + GTTG PK +  T+          D ++    + + C       Y + LP AH +
Sbjct: 147 ----SGGTTGLPKLIPRTH---------NDYLYSARASAEACGLDPGTVYLAVLPAAHNF 193

Query: 280 DQIIETHCIHKGCSIG-FWRG---------DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
                   +     +G    G                 I+  K T  + VP + +     
Sbjct: 194 -------TLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWL-- 244

Query: 330 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 389
                                               A   D    S         L+ + 
Sbjct: 245 -----------------------------------EAAEWDQADLS--------SLRVIQ 261

Query: 390 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTT-VEA 447
            G APL   +   +    G PL Q +G+ E     +T L D  ++I  T G P++   E 
Sbjct: 262 VGGAPLSPELARRVEERLGCPLQQVFGMAEG-LVNYTRLDDPPDVIMRTQGRPISPADEI 320

Query: 448 RLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
           R+  V + G      VP GE+     RG     GYY+ P+        DG++ T
Sbjct: 321 RI--VDDQGEP----VPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRT 368

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 65/287 (22%), Positives = 109/287 (37%), Gaps = 66/287 (22%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY- 279
           +++ I+YTSG+TGEPKGV+L+++ + A   S+ Q   +T     E+D   + LP +  Y 
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELT-----EDDRILAVLPFSFDYG 57

Query: 280 -DQIIETHCIHKGCSIGFWRGDVRYLM-----EDIQELKPTMFSGVPRVYDRIYTGISNK 333
             Q++ T     G  +     + R+       + + + + T F+GVP  +          
Sbjct: 58  LSQLL-TAFRVGGTLV----LESRFAFPRDVLKHLAKERITGFAGVPTTW---------- 102

Query: 334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 393
                                              L  L     RE F   L+ + +   
Sbjct: 103 ---------------------------------AQLLRLD-PLAREDF-PSLRYLTNAGG 127

Query: 394 PLP-IHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 452
            LP   + +  R    A L   YGLTE+    +    ++     ++G  +  VE  L  V
Sbjct: 128 ALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIGKAIPNVE--LWVV 185

Query: 453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEV 499
            E G         GE+  RG  +  GY+  P+ T E +  G    E+
Sbjct: 186 DEDGNRCAPGEV-GELVHRGANVMKGYWNDPEATAERLRPGPLPGEI 231

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 73.4 bits (181), Expect = 9e-14
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 32/174 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC-NSQAIT------YV 130
           LTY E+ + A R    + ++G+ PGD  GIY  N  E++ AM     ++A+       YV
Sbjct: 29  LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV 88

Query: 131 P-----LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185
                 L D   A A+   +   E +       ++  +L  LP+    L+T+V   + S 
Sbjct: 89  EDELRYLLDDSDAVAL---VYEREFA------PRVAEVLPRLPK----LRTLVVVEDGS- 134

Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
                  +L      +E+ L  G+ + +   +   ++  ++YT GTTG PKGV+
Sbjct: 135 -----GNDLLPGAVDYEDALAAGSPERDFGERSPDDL-YLLYTGGTTGMPKGVM 182

Length = 533

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 101/462 (21%), Positives = 159/462 (34%), Gaps = 117/462 (25%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT--- 135
           T+ + Y    R  SA+  R + PG    +   N P           +A   VP+      
Sbjct: 47  TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIP--------AMYEAHFGVPMAGAVVN 98

Query: 136 -----LGANAVEFIINHAEVSIAFVQENKIP------SILSCLPRCCLYLKTIVSFANVS 184
                L A  + F++ H++  +  V +           IL+   +       ++   + +
Sbjct: 99  CVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPT 158

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCEL---PPKKKTNISTIMYTSGTTGEPKGVVLT 241
              K     LG     +E+FL+ G  D E    PP  +     + YTSGTT  PKGVVL 
Sbjct: 159 CDPKSLQYALGKGAIEYEKFLETG--DPEFAWKPPADEWQSIALGYTSGTTASPKGVVLH 216

Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH----IYDQIIETHCIHKGCSIGFW 297
           ++      LS   ++ +     +E   Y   LP+ H     +   +   C   G +I   
Sbjct: 217 HRGAYLMALSNALIWGM-----NEGAVYLWTLPMFHCNGWCFTWTLAALC---GTNICLR 268

Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357
           +   + +   I     T F   P V + I                               
Sbjct: 269 QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNA---------------------------- 300

Query: 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV----EEFLRVTSGAPLTQ 413
              P+++    L  +V              M +GAAP P  +    E+  RVT    L++
Sbjct: 301 ---PKSETILPLPRVV------------HVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSE 345

Query: 414 GYGLTESCSGC--FTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS--------- 462
            YG +  C+    + SL                 +ARL +   + Y  L           
Sbjct: 346 TYGPSTVCAWKPEWDSLPPE-------------EQARLNARQGVRYIGLEGLDVVDTKTM 392

Query: 463 --VPR-----GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
             VP      GEI +RGN +  GY K P   EE   +GWFH+
Sbjct: 393 KPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHS 434

Length = 567

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 71.2 bits (175), Expect = 4e-13
 Identities = 77/297 (25%), Positives = 128/297 (43%), Gaps = 75/297 (25%)

Query: 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD----------QMFVVTGKVCS 264
           P     +++ + YT GTTG  KG +LT++ ++A +              +  VVT     
Sbjct: 201 PELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTA---- 256

Query: 265 EEDTYFSFLPLAHIYDQIIETHC---IHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPR 321
                   LPL HI+   +  +C   I  G        + R +   ++ELK   F+ +  
Sbjct: 257 --------LPLYHIF--ALTVNCLLFIELG-GQNLLITNPRDIPGFVKELKKYPFTAI-- 303

Query: 322 VYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAF 381
                 TG++            LF    N +    ++          LD   FS ++ + 
Sbjct: 304 ------TGVNT-----------LFNALLNNE--EFQE----------LD---FSSLKLSV 331

Query: 382 GGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA-DVFNMIGTVGV 440
           GG       G A      E ++++T G  L +GYGLTE CS   +    D+    G++G+
Sbjct: 332 GG-------GMAVQQAVAERWVKLT-GQYLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGL 382

Query: 441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
           P+ + E +L  V + G +     P GE+ ++G  +  GY++RP+ T+EVI DGW  T
Sbjct: 383 PVPSTEIKL--VDDDGNEVPPGEP-GELWVKGPQVMLGYWQRPEATDEVIKDGWLAT 436

Length = 560

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 71.0 bits (174), Expect = 4e-13
 Identities = 75/298 (25%), Positives = 125/298 (41%), Gaps = 65/298 (21%)

Query: 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV----VTGKVCSEED 267
              P  K+ +++ IMY+SGTTG  KGVVLT++ ++A V    ++FV       +    ++
Sbjct: 190 VPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMV----ELFVRFEASQYEYPGSDN 245

Query: 268 TYFSFLPLAHIYD-QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDR 325
            Y + LP+ HIY   +     +  G +I   R  D   +++ I   K T F  VP +   
Sbjct: 246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPIL-- 303

Query: 326 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRL 385
                        AL+KK              KG+       +L SL             
Sbjct: 304 ------------MALTKK-------------AKGV----CGEVLKSLK------------ 322

Query: 386 QAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGLTESCS-GCFTSLADVFNMIGTVGVPMT 443
             +  GAAPL    +++F++        QGYG+TES + G      +  +   +VG+   
Sbjct: 323 -QVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAP 381

Query: 444 TVEARLESVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
            ++A++     + +     +P    GE+ ++G  +  GY   P  T+  I  DGW  T
Sbjct: 382 NMQAKV-----VDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRT 434

Length = 560

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 70.7 bits (173), Expect = 9e-13
 Identities = 90/401 (22%), Positives = 152/401 (37%), Gaps = 52/401 (12%)

Query: 72  VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
            G   WLTY  V   A   GS + + GV PGD  G+        +I   AC     T +P
Sbjct: 452 SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLP 511

Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE- 190
           L      + +  +I+  ++ + F   N + +IL+C  R    L+T+V      S   ++ 
Sbjct: 512 LVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSR---KLETVV---YTHSFYDEDD 563

Query: 191 ---AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV- 246
              A +L ++   +E   Q G L      +  T  +   Y    T    G      A+V 
Sbjct: 564 HAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASG---DGLAVVR 620

Query: 247 ---AEVLSVDQMFVVTGKVCS--EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
              A+VL      V+TG + S  ++     F P A +++++        G ++     D 
Sbjct: 621 VTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVA--TVDA 678

Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK--LGNMKKG 359
            +L     + +PT+    P ++      +S       A+   LFE A+  +  L N+   
Sbjct: 679 AHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIH-- 736

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE 419
               + + LL  + F   +E  GG               VE+ +   S    +  + L E
Sbjct: 737 ---RRDSSLLRFIFFRATQELLGGC--------------VEKIVLCVSEESTS--FSLLE 777

Query: 420 SCSGCFTS-LADVF--NMIGTV---GVPMTTVEARLESVPE 454
             S C+   L +VF     G     G P  +++  LE   E
Sbjct: 778 HISVCYVPCLREVFFLPSEGVFCVDGTPAPSLQVDLEPFDE 818

Length = 1452

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 70.0 bits (172), Expect = 1e-12
 Identities = 62/301 (20%), Positives = 111/301 (36%), Gaps = 92/301 (30%)

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           ++  ++TSG+TG PK V+ T++ + A    + Q +        E      +LP  H +  
Sbjct: 166 VAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLT---EEPPVLVDWLPWNHTF-- 220

Query: 282 IIETHCIHKGCSIGF----WRGDVRYL-------------MEDIQELKPTMFSGVPRVYD 324
                    G +  F    + G   Y+             + +++E+ PT++  VP+ ++
Sbjct: 221 ---------GGNHNFNMVLYNGGTLYIDDGKPVPGLFEETLRNLREVSPTVYFNVPKGFE 271

Query: 325 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGR 384
                          L   L                 +  AA          +R  F  R
Sbjct: 272 --------------MLVDAL-----------------ERDAA----------LRRRFFKR 290

Query: 385 LQAMLSGAAPLPIHV----EEFLRVTSG--APLTQGYGLTESC-SGCFTSLADVFNMIGT 437
           L+ +    A LP  V    +     T+G   P+T G G TE+  +  F          G 
Sbjct: 291 LRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTD--RSGV 348

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFH 496
           +G+P    E +L  VP  G        + E+ ++G  +  GY++ P+LT E    +G++ 
Sbjct: 349 IGLPAPGTELKL--VPNGG--------KLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYR 398

Query: 497 T 497
            
Sbjct: 399 I 399

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 12/170 (7%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY ++ D   R+  A  + G+  GD   +   N PE ++A+ A     +    L+    
Sbjct: 38  LTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGS 97

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            +   +++  A +S   V           L      LK +++   V      +  +L   
Sbjct: 98  LDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVP-----DGVDL--- 149

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
                   + G            +I+ + YT GTTG+PKGV+ T+++I  
Sbjct: 150 ---LAAAAKFGPAPLV-AAALPPDIAGLAYTGGTTGKPKGVMGTHRSIAT 195

Length = 524

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 68.6 bits (169), Expect = 2e-12
 Identities = 61/307 (19%), Positives = 97/307 (31%), Gaps = 99/307 (32%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY-----FSF--- 272
           +++ ++YTSG+TG PKGV++ ++ +V  +  + + + +T       D       FSF   
Sbjct: 94  DLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLT-----AGDRVLQFASFSFDAS 148

Query: 273 -----LPLA-----HIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRV 322
                 PL       +     E               D   L E ++E + T+   VP  
Sbjct: 149 VWEIFPPLLSGATLVLAPP--EVL------------RDPEALAELLREHRITVLHLVP-- 192

Query: 323 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG 382
                                                        LL +L+ +    A  
Sbjct: 193 --------------------------------------------SLLRALLDALEPAALP 208

Query: 383 GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE---SCSGCFTSLADVFNMIGTVG 439
                ++ G A     V  +  +  GA L   YG TE     +       D+      +G
Sbjct: 209 SLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIG 268

Query: 440 VPMTTVEA-----RLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGW 494
            P+           L  VP         VP GE+ + G  +  GY  RP+LT E  V   
Sbjct: 269 RPIANTRVYVLDEDLRPVPVG-------VP-GELYIGGAGVARGYLNRPELTAERFVPDP 320

Query: 495 FHTEVHR 501
           F     R
Sbjct: 321 FGGPGER 327

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 68.0 bits (167), Expect = 3e-12
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 14/96 (14%)

Query: 408 GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP--- 464
           G  L +GYG+TE+               G+ G P   VE R+  V E G +    VP   
Sbjct: 219 GVKLVEGYGMTETGVPIIAPGDP--APPGSCGRPRPGVEVRI--VDEDGRE----VPPGE 270

Query: 465 RGEICLRGN---TLFSGYYKRPDLTEEVIVDGWFHT 497
            GE+ +R      +F GYY  P+ T +   +GWFHT
Sbjct: 271 VGELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHT 306

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 74/283 (26%), Positives = 117/283 (41%), Gaps = 51/283 (18%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG----KVCSE-EDTYFSFLPL 275
           +I+ + YT GTTG  KG +LT+  +VA +L V       G     +  E ++   + LPL
Sbjct: 208 DIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPL 267

Query: 276 AHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 335
            HIY       C+                          M SG   V       I+N   
Sbjct: 268 YHIYAFTANCMCM--------------------------MVSGNHNVL------ITNPRD 295

Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
             G + K+L ++ ++  LG +          P    L FS         L+   SG   L
Sbjct: 296 IPGFI-KELGKWRFSALLG-LNTLFVALMDHPGFKDLDFS--------ALKLTNSGGTAL 345

Query: 396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 455
                E     +G  + +GYGLTE+     T+       +GTVG+P+      L+ + + 
Sbjct: 346 VKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPV--PGTALKVIDDD 403

Query: 456 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
           G + L    RGE+C++G  +  GY+++P+ T E +  +GWF T
Sbjct: 404 G-NELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKT 445

Length = 562

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 15/207 (7%)

Query: 78  LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
            T+  +   A     A+    G+    R G    NC E +  + A       + PL   L
Sbjct: 39  TTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQL 98

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEEL- 194
             + +  IINHAE  +          +   L  C C+     V F   S +    A    
Sbjct: 99  MNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCV---RAVVFIGPSDADSAAAHMPE 155

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS--- 251
           G+  +S+E  L   +   + P   +T  + I Y++GTTG PKGVV +++++  + LS   
Sbjct: 156 GIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRT 215

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHI 278
            D + V  G+      ++   +P+ H+
Sbjct: 216 TDSLAVTHGE------SFLCCVPIYHV 236

Length = 576

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 65.6 bits (161), Expect = 2e-11
 Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 28/169 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ + A R    +R+RGV PGD   +     PE ++A+ A       YVPL     
Sbjct: 13  LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYP 72

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  + F++  +   +    E+  P                             A++L + 
Sbjct: 73  AERLAFMLEDSGARVLLTDESLAPLA--------------------------RADQLPLV 106

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
               E   +        P     +++ +MYTSG+TG PKGV + ++ +V
Sbjct: 107 ILEEELDAEDA--GPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 64.2 bits (157), Expect = 6e-11
 Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 21/135 (15%)

Query: 378 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES---CSGCFT-------S 427
           R      + AM++GAAP P  V   +    G  LT  YGLTE+    + C          
Sbjct: 292 RAGIDHPVHAMVAGAAP-PAAVIAKME-EIGFDLTHVYGLTETYGPATVCAWQPEWDALP 349

Query: 428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR-----GEICLRGNTLFSGYYKR 482
           L +   +    GV     E     V  +  D +  VP      GEI  RGN +  GY K 
Sbjct: 350 LDERAQLKARQGVRYPLQEG----VTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKN 405

Query: 483 PDLTEEVIVDGWFHT 497
           P  TEE    GWFHT
Sbjct: 406 PKATEEAFAGGWFHT 420

Length = 545

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 64.3 bits (157), Expect = 7e-11
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 32/183 (17%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            TY E+YD   R    +R  GV  GDR  IY    PE +IAM AC      +  ++    
Sbjct: 74  YTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFA 133

Query: 138 ANAVEFIINHAE----VSIAF-VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK--- 189
           +  +   I+ A+    V+ +F ++  ++           +  K ++  A +  SQ K   
Sbjct: 134 SKELASRIDDAKPKLIVTASFGIEPGRV-----------VPYKPLLDKA-LELSQHKPHK 181

Query: 190 ---------EAEELGVSCFSWEEFL-QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
                     A         W E + +   +DC   P + T+   I+YTSGTTG+PKGVV
Sbjct: 182 VLILNRGQVPAPLKPGRDLDWAELMAKARPVDCV--PVESTDPLYILYTSGTTGKPKGVV 239

Query: 240 LTN 242
              
Sbjct: 240 RDT 242

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 39/213 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            T++E+ D       A+  RGV  GDR  I   N  E++ ++ A N      VP+   L 
Sbjct: 43  TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV- 196
              + F+++     +   +                      + A V+++ +     L   
Sbjct: 103 PPEIAFLVSDCGAHVVVTEA---------------------ALAPVATAVRDIVPLLSTV 141

Query: 197 ---------SCFSWEEFLQLGTLDCELPPKKKTNIST--IMYTSGTTGEPKGVVLTNQAI 245
                    S   +E+   L        P    N S   IMYTSGTTG PKG VLT+  +
Sbjct: 142 VVAGGSSDDSVLGYED--LLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANL 199

Query: 246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
             + +      + T       D  F  +PL HI
Sbjct: 200 TGQAM----TCLRTNGADINSDVGFVGVPLFHI 228

Length = 542

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 12/206 (5%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E+ + + RF + +R RGV  GDR  ++  NCP++ I           +VP+     
Sbjct: 59  ITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFR 118

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + + + +N A   +    +   P +        L    + S A+V  ++        + 
Sbjct: 119 EHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLR 178

Query: 198 -----CFSWEEFLQL---GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV 249
                     + L      T    LPP     ++ + YT GTTG PKG   T + +V   
Sbjct: 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTA 238

Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPL 275
            +          V  E+  + SFLP 
Sbjct: 239 AA----AYAVAVVGGEDSVFLSFLPE 260

Length = 567

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 24/202 (11%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L YQ +   A      + + G+ PGDR  +      +++ A  AC    +  VPL   +G
Sbjct: 50  LPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMG 109

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
               E  I      +A           S  P   +    ++ + N ++          + 
Sbjct: 110 FGGRESYIAQLRGMLA-----------SAQPAAIITPDELLPWVNEATHGNP-----LLH 153

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQM 255
             S   F  L   D  LP     +I+ + Y+SG+T  P+GV++T++A++A +  +S D +
Sbjct: 154 VLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL 213

Query: 256 FVVTGKVCSEEDTYFSFLPLAH 277
            V  G  C       S+LP  H
Sbjct: 214 KVRPGDRC------VSWLPFYH 229

Length = 579

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 40/182 (21%), Positives = 67/182 (36%), Gaps = 29/182 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+   A    +A+R+ GV PGD   +      E I+A+         YVP+     
Sbjct: 13  LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A     I+  A                                        +  E   + 
Sbjct: 73  AERRAAILARAGARAVLTD----------------------------PGLAQPEEAPDLL 104

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             + +            P     +++ +++TSG+TGEPKGV++T++A V  +L V++ F 
Sbjct: 105 VVADDAAAAESPAP-PPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFG 163

Query: 258 VT 259
           V 
Sbjct: 164 VG 165

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 399 VEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY 457
           + +F RV + A     YGLTE+CSG            IG+ G  +  VE R+      G 
Sbjct: 281 IRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD--GAG- 337

Query: 458 DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
             L    +GEIC+RG  +  GY+K P+ T E     WF +
Sbjct: 338 RWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRS 377

Length = 497

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 62.2 bits (152), Expect = 3e-10
 Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 25/178 (14%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +++ E+     R  +A+R  GV PGDR   Y  N PE +IAM A  S    +       G
Sbjct: 87  ISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFG 146

Query: 138 ANAV--EFIINHAEVSIA----------FVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185
             AV   F     +V  A            +  KI  I+  LP     L+ +V    +SS
Sbjct: 147 VEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS----LEAVVVVPYLSS 202

Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPK-KKTNIST---IMYTSGTTGEPKGVV 239
                  +     FS    L     D   P + ++        I+Y+SGTTG PK +V
Sbjct: 203 -----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIV 255

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 10/172 (5%)

Query: 70  GKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY 129
           G V  Y   +Y E+ +   R  +   S G+  GD+  ++  NCPE+I             
Sbjct: 33  GVVRRY---SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIM 89

Query: 130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK 189
           VP+   L      +I+ +++ S+        P            L+ I     ++     
Sbjct: 90  VPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHIC----LTRVALP 145

Query: 190 EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
             +  GVS F+  +  Q  TL C  PP    + + I++TSGTT  PKGVV+T
Sbjct: 146 ADD--GVSSFTQLKAQQPATL-CYAPPLSTDDTAEILFTSGTTSRPKGVVIT 194

Length = 517

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.1 bits (149), Expect = 6e-10
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 29/219 (13%)

Query: 78  LTYQEVYDAAIRF-GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC-NSQAITYVPLYDT 135
           ++Y+E+ + A R  G   +  GV  GDR  +Y  N P+++IA  A   + A+  VP+   
Sbjct: 36  ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVV-VPVNPM 94

Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN---------VSSS 186
                +   +  +   +A V     P +   +    L    +  +++         V + 
Sbjct: 95  NREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAW 154

Query: 187 QKKEAEELGVSCF---SWEEFLQLGTLDCELPPKKKT----NISTIMYTSGTTGEPKGVV 239
            + E     ++     +W+E      L   L P   T    +++ + YTSGTTG PKG +
Sbjct: 155 LRAEPPLQALAPGGVVAWKE-----ALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCM 209

Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
            T++ ++A  +        T      E    + LPL H+
Sbjct: 210 HTHRTVMANAVGSVLWSNSTP-----ESVVLAVLPLFHV 243

Length = 546

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 61.0 bits (149), Expect = 6e-10
 Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 47/199 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLYD 134
            TY+E  +        + + G+  GDR GI+  N PEW++   A        V   P Y 
Sbjct: 44  WTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYR 103

Query: 135 TLGANAVEFIINHAEVS-------------IAFVQENKIPSILSCLPRCCL-----YLKT 176
               + +E+ +N +                +A + E   P + +C P          L+ 
Sbjct: 104 L---SELEYALNQSGCKALIAADGFKDSDYVAMLYE-LAPELATCEPGQLQSARLPELRR 159

Query: 177 IVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT--LDCELPPKKKT-------NISTIMY 227
           ++             +E      +++E L LG    D EL  ++ T       NI    Y
Sbjct: 160 VIFL----------GDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQ---Y 206

Query: 228 TSGTTGEPKGVVLTNQAIV 246
           TSGTTG PKG  LT++ I+
Sbjct: 207 TSGTTGFPKGATLTHRNIL 225

Length = 559

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 60.7 bits (148), Expect = 9e-10
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 18/127 (14%)

Query: 378 REAFGGRLQAMLSGAAPLPIHV----EEFLRVTSGA--PLTQGYGLTESCSGCFTSLADV 431
           R  F  RL+ +    A L   V    +     T G    +  G G+TE+ +   T     
Sbjct: 329 RRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTET-APSATFTTGP 387

Query: 432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV 491
            +  G +G+P    E +L  VP  G        + E+ ++G  +  GY++ P+LT E   
Sbjct: 388 LSRAGNIGLPAPGCEVKL--VPVGG--------KLEVRVKGPNVTPGYWRAPELTAEAFD 437

Query: 492 D-GWFHT 497
           + G++ +
Sbjct: 438 EEGYYRS 444

Length = 614

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 60.3 bits (147), Expect = 1e-09
 Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 24/174 (13%)

Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI-----IAMEACNSQAITYV 130
              T+ E Y    R  SA+  RG+  GD   +   N P  +     + M       +   
Sbjct: 42  RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNT- 100

Query: 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSI---LSCLPRCCLYLKTIVSFANVSSSQ 187
                L A ++ F++ H E  +  V           L+ LP      K +V   +V   +
Sbjct: 101 ----RLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPG----PKPLV--IDVDDPE 150

Query: 188 KKEAEELGVSCFSWEEFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
                 +G     +E FL  G       LP  +   I+ + YTSGTTG PKGVV
Sbjct: 151 YPGGRFIGA--LDYEAFLASGDPDFAWTLPADEWDAIA-LNYTSGTTGNPKGVV 201

Length = 545

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 65/320 (20%)

Query: 192 EELGVSCFSWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
           EE      +W+E L+       T D E     +T++  + ++SGTTG  KGV+LT++ +V
Sbjct: 153 EEKIEGAVNWKELLEAADRAGDTSDNEE--ILQTDLCALPFSSGTTGISKGVMLTHRNLV 210

Query: 247 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI---HKGCSIGFWRGDVRY 303
           A + S   +F V  ++  +  T    +P  HIY  I    C    +KG  +   R ++R 
Sbjct: 211 ANLCS--SLFSVGPEMIGQVVT-LGLIPFFHIYG-ITGICCATLRNKGKVVVMSRFELRT 266

Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
            +  +   + +    VP +   I   + N                               
Sbjct: 267 FLNALITQEVSFAPIVPPI---ILNLVKN------------------------------- 292

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL-PIHVEEFLRVTSGAPLTQGYGLTE-SC 421
              P+++    SK++      LQA+++ AAPL P  +  F     G  + + YGLTE SC
Sbjct: 293 ---PIVEEFDLSKLK------LQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSC 343

Query: 422 SGCFTSLADVFNMIG---TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG 478
                   +  + I    +VG  +  +E +    P+ G     + P GE+C+R   +  G
Sbjct: 344 ITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID-PDTGRSLPKNTP-GELCVRSQCVMQG 401

Query: 479 YYKRPDLTEEVI-VDGWFHT 497
           YY   + T+  I  DGW HT
Sbjct: 402 YYNNKEETDRTIDEDGWLHT 421

Length = 546

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 40/200 (20%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+YQ+++         +R+ GV    R  +   N  +W+IA  AC    I  +P+     
Sbjct: 3   LSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE-AEELGV 196
           A   + ++N A                            ++S    ++S        LG 
Sbjct: 60  AQQTQHLLNDAGAD------------------------LLISDDPDAASALHTPFATLGE 95

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
             +               P +     + I YTSG+TG+PKGV L+  A+     S+ +  
Sbjct: 96  DLYIA-------LRPSANPVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAI 148

Query: 257 VVTGKVCSEEDTYFSFLPLA 276
            +      E + +   LPLA
Sbjct: 149 AIL-----EPERHLCLLPLA 163

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 60.3 bits (147), Expect = 1e-09
 Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 31/204 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+   A    + +++ G  PGDR  +      +++ A   C         LY    
Sbjct: 24  LTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGC---------LY---- 69

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
           A A+             +   ++ +IL     R       +++ + V ++ +        
Sbjct: 70  AGAIAVPAPPPRRLGRHLA--RLAAILADAGAR------AVLTTSAVLAALRAALAAPAA 121

Query: 197 SCFSW---EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                   ++   L   D   PP    +I+ + YTSG+TG PKGV++T+  ++A   ++ 
Sbjct: 122 LLLLLIAADDLAALAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLA---NLR 178

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAH 277
            +    G     +D   S+LPL H
Sbjct: 179 AIARAFG--LDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 18/101 (17%)

Query: 408 GAPLTQGYGLTESCSGCFTSLADVFN--------MIGTVGVPMTTVEARLESVPEMGYDA 459
           G  L Q +GL E  +G  T L    +         IGT G   T +E +++       D 
Sbjct: 305 GKVLVQYFGLGE-VTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD------DE 357

Query: 460 LSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
              +P    GEIC+ G  +F+GYY  P+   +   DGWF T
Sbjct: 358 GRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRT 398

Length = 528

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 92/444 (20%), Positives = 162/444 (36%), Gaps = 76/444 (17%)

Query: 64  GRKVSDGKVGPYVW------LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117
            R V +G+ G   +      L+Y E+     R G+A+R  GV   +R  +   +  ++ I
Sbjct: 11  DRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPI 70

Query: 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTI 177
           A        I  V L   L A+   +++  +   + FV    +P I + L +   +L+  
Sbjct: 71  AFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP-HLEHR 129

Query: 178 VSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKG 237
           V      + + + AE L       E+F        +    +  + +  +Y+SG+TG PKG
Sbjct: 130 VVVGRPEAGEVQLAELLATES---EQF--------KPAATQADDPAFWLYSSGSTGMPKG 178

Query: 238 VVLT--NQAIVAEVLSVDQMFVVTGKVC-SEEDTYFSF-LPLAHIYDQIIETHCIHKGCS 293
           VV T  N    AE+ + + + +    V  S    +F++ L  A  +   +    +  G  
Sbjct: 179 VVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMG-- 236

Query: 294 IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353
               R     + + ++  +PT+F GVP +Y                              
Sbjct: 237 ---ERPTPDAVFDRLRRHQPTIFYGVPTLY------------------------------ 263

Query: 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQ 413
                 M  +   P  D +           RL+   S    LP  V +  +   G  +  
Sbjct: 264 ----AAMLADPNLPAEDQV-----------RLRLCTSAGEALPAEVGQRWQARFGVDIVD 308

Query: 414 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN 473
           G G TE      ++L       GT G P+     RL  V + G D  +  P GE+ + G 
Sbjct: 309 GIGSTEMLHIFLSNLPGDVRY-GTSGKPVPGYRLRL--VGDGGQDVAAGEP-GELLISGP 364

Query: 474 TLFSGYYKRPDLTEEVIVDGWFHT 497
           +  + Y+     T +     W  +
Sbjct: 365 SSATMYWNNRAKTRDTFQGEWTRS 388

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 60/291 (20%), Positives = 106/291 (36%), Gaps = 94/291 (32%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
            ++TSG+TG PK V+ T Q ++   +++ Q  +   +          ++P  H       
Sbjct: 225 YLFTSGSTGMPKAVINT-QRMMCANIAM-QEQLRPREPDPPPPVSLDWMPWNHTM----- 277

Query: 285 THCIHKGCSIGF----WRGDVRYL-------------MEDIQELKPTMFSGVPRVYDRIY 327
                 G +  F    W G   Y+             + +++E+ PT++  VP  Y    
Sbjct: 278 ------GGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGY---- 327

Query: 328 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQA 387
                       L++                 M ++ A           +R +F   L+ 
Sbjct: 328 ----------AMLAE----------------AMEKDDA-----------LRRSFFKNLRL 350

Query: 388 MLSGAAPLPIHVEEFLRV----TSGA--PLTQGYGLTESCSGCFTSLADVFNMIGTVGVP 441
           M  G A L   + E ++     T+G   P   GYG TE+ +   T        +G +G+P
Sbjct: 351 MAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLP 409

Query: 442 MTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEV 489
           +  VE +L              P G   E+ ++G  +  GY+K P+LT   
Sbjct: 410 LPGVELKL-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAA 447

Length = 624

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 57.7 bits (140), Expect = 8e-09
 Identities = 75/311 (24%), Positives = 124/311 (39%), Gaps = 80/311 (25%)

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           I+ I ++SG+TGEPKGV+LT++ ++  + +     ++     + ED + S++PL H    
Sbjct: 108 IAFIQFSSGSTGEPKGVILTHKNLLTNIEA-----IIEAAEITSEDVFLSWMPLTHDMGL 162

Query: 282 IIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVY-DRIYTGISNKISSGGAL 340
           I      H   +     G  +YLM         +F   P ++ D+     +  +SS    
Sbjct: 163 I----GFHLTPTA---LGINQYLM------PTRLFIRRPLLWLDKASQHRATILSSP--- 206

Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV- 399
                 F Y Y L + K     +      D    S +R  F        +GA P+   + 
Sbjct: 207 -----NFGYKYLLKHFKTEKIID-----WD---LSSVRLIF--------NGAEPISADLC 245

Query: 400 EEF--------LRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMI----GTVGVPMTTVE 446
           EEF        LR  +   +   YGL E+     F    + F  +      + V +  +E
Sbjct: 246 EEFLEKMAPFGLRPNA---MYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIE 302

Query: 447 ARLE-----SVPEMGY-----------DALSSVPR---GEICLRGNTLFSGYYKRPDLTE 487
              +     S  E+G            DA   +P    G I ++G+ + SGYY  P+ T+
Sbjct: 303 IDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATK 362

Query: 488 EVIV-DGWFHT 497
           + I  DGW  T
Sbjct: 363 KSITPDGWLKT 373

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 18/123 (14%)

Query: 385 LQAMLSGAAPL-PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM------IGT 437
           L+ +  GA+P+ P+ + E +    G    Q YG TE      T L    +       + +
Sbjct: 283 LETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTE-APMVITYLRKRDHDPDDPKRLTS 340

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGW 494
            G P   +   L        +    V +   GEIC+RG  +  GY+ RP+ T E   DGW
Sbjct: 341 CGRPTPGLRVALLD------EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGW 394

Query: 495 FHT 497
            HT
Sbjct: 395 LHT 397

Length = 524

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 220 TNISTIMYTSGTTGEPKGVVLTN-QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
            + + I+YTSGTTG PKGV+LT+ Q + A  L+   +          +D   + LPL HI
Sbjct: 81  VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLL------GLRPDDVLLTPLPLFHI 134

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 31/129 (24%)

Query: 399 VEEFLRVTS--GAP---LTQGYGLTESCSGCF----------TSLADVFNMIGTVGVPMT 443
           +  FL + +  G P   +   +G++E+CSG            T    V ++ G +     
Sbjct: 306 IRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAA 365

Query: 444 TVEARLESVPEMGY-----------DALSSVPRGEIC---LRGNTLFSGYYKRPDLTEEV 489
                +  V E+G            +  + +P GE+    +RG T+ SGYY+ P+   E 
Sbjct: 366 DHPEAVTFV-ELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEA 424

Query: 490 IV-DGWFHT 497
              DGWF T
Sbjct: 425 FTEDGWFRT 433

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 36/251 (14%)

Query: 41  GLESPWQFFC----DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS 96
           GL   W   C    D A RI  N+ +  R V     GP V  TY +++D A++   A+  
Sbjct: 3   GLMQDWPLLCHRIIDHAARIHGNREVVTRSVE----GPIVRTTYAQIHDRALKVSQALDR 58

Query: 97  RGVNPGDRCGIYGSNCPE----WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152
            G+  GDR      N       W   M      AI +  +   L    + +IINHAE  +
Sbjct: 59  DGIKLGDRVATIAWNTWRHLEAWYGIM---GIGAICHT-VNPRLFPEQIAWIINHAEDRV 114

Query: 153 AFVQENKIP---SILSCLPRCCLYLKTIVSF---ANVSSSQKKEAEELGVSCFSWEEFLQ 206
                  +P    I   LP     ++  V     A++  +  K A        ++EE++ 
Sbjct: 115 VITDLTFVPILEKIADKLPS----VERYVVLTDAAHMPQTTLKNA-------VAYEEWIA 163

Query: 207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 266
               D       +   + + YTSGTTG+PKGV+ ++++ V   L  +    + G   +  
Sbjct: 164 EADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAA-- 220

Query: 267 DTYFSFLPLAH 277
           DT    +PL H
Sbjct: 221 DTMLPVVPLFH 231

Length = 542

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 24/78 (30%), Positives = 34/78 (43%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ DAA R  +A+   GV PGD       N  E+++   AC        P+     
Sbjct: 2   LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61

Query: 138 ANAVEFIINHAEVSIAFV 155
              + FI+  A   + FV
Sbjct: 62  ERELGFILRQARARVLFV 79

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 21/116 (18%)

Query: 391 GAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN------MIGTVGVPMT 443
           GA+ +P+ V +E      G      YG TE        LA V          G+ G P+ 
Sbjct: 294 GASIMPVEVLKELRERLPGLRFYNCYGQTE-----IAPLATVLGPEEHLRRPGSAGRPVL 348

Query: 444 TVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFH 496
            VE R+        D  + V     GEI  R   L  GY+  P+ T E    GWFH
Sbjct: 349 NVETRVVD------DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFH 398

Length = 523

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 42/171 (24%), Positives = 62/171 (36%), Gaps = 57/171 (33%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           L+Y E+ + + R  + +   GV PGDR  G+     PE ++A+ A       YVPL+   
Sbjct: 1   LSYAELREQSARVANLLADLGVKPGDRVAGLLPRT-PELVVAILATWRVGAIYVPLFTAF 59

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
           G  A+E+ + H+                             V   N +            
Sbjct: 60  GPKAIEYRLGHSG--------------------------AKVVVTNAA------------ 81

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
                      G LD         ++   MYTSGTTG PKGV +   A+ A
Sbjct: 82  ---------NRGKLD--------DDLFAQMYTSGTTGLPKGVPVPLNALAA 115

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY+E++D A RF + +R+ GV+PGDR  +   + PE + A  AC       V L   L 
Sbjct: 11  LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLT 70

Query: 138 ANAVEFIINHAE 149
              +E I++ + 
Sbjct: 71  PQDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 24/84 (28%), Positives = 38/84 (45%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
             TY E+ +   R  + + + GV PGDR  +   NCPE++ A  A N      VP+   L
Sbjct: 3   RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62

Query: 137 GANAVEFIINHAEVSIAFVQENKI 160
               +  I++H+   +  V    I
Sbjct: 63  RGEELAHILDHSGARLIVVDTAAI 86

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 90/452 (19%), Positives = 154/452 (34%), Gaps = 117/452 (25%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           T+ ++ D + +  +  ++ G+  GD   +      E+  +M A +      +P    L A
Sbjct: 49  TFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTA 108

Query: 139 NAVEFIINHAEVS-IAFVQENKIP-SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
             + + I  A +  I  + E+ +P  I    P C      ++    V     +       
Sbjct: 109 KDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVL----VGDPVPE------- 157

Query: 197 SCFSWEEFLQLGTLDC--ELPP------KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
               W +F +    +   +             +I  + +TSGTTG PK        +V  
Sbjct: 158 ---GWIDFDK-EIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPK--------MVEH 205

Query: 249 VLSVDQMFVVTGKV--CSEE--------DTYFSFLPLAHIYDQIIETHCIHKGCSI---G 295
             +     +VT K     +E        DT +       +Y Q I       G ++    
Sbjct: 206 DHTYPLGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGKLYGQWI------AGAAVFVYD 259

Query: 296 FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355
           + + D + L+E I++   T F   P +Y R    I   +S             Y+     
Sbjct: 260 YDKFDPKNLLEKIEKYGVTTFCAPPTIY-RFL--IKEDLSK------------YD----- 299

Query: 356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGY 415
                              S +R           +G    P     F   T G  L +G+
Sbjct: 300 ------------------LSSLRYC-------TTAGEPLNPEVFNTFKEKT-GIKLMEGF 333

Query: 416 GLTESCSGCFTSLADVFNMI---GTVGVPMTTVEARLESVPEMGYDALSSVP--RGEICL 470
           G TE       ++A    M    G++G P    +  +     +  D  S      GEI +
Sbjct: 334 GQTE----TTLTIATFPWMEPKPGSMGKPSPGYDIDI-----IDPDGKSCEVGEEGEIVI 384

Query: 471 RGNT-----LFSGYYKRPDLTEEVIVDGWFHT 497
           R +      LF GYY+ P+ T EV  DG++HT
Sbjct: 385 RTSDGKPLGLFMGYYRDPERTAEVWHDGYYHT 416

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 54.9 bits (133), Expect = 5e-08
 Identities = 19/78 (24%), Positives = 36/78 (46%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
            LTY E+   + R   A+ + G+ PGDR  +      E+++   A        VPL  + 
Sbjct: 11  SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70

Query: 137 GANAVEFIINHAEVSIAF 154
            A  + +I++ ++ S+  
Sbjct: 71  PAAELAYILSDSQPSLLV 88

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 17/122 (13%)

Query: 384 RLQAMLSGAAPLPIHVEEFLRVTS----GAPLTQGYGLTE-SCSGCFTSLADVFNMIGTV 438
            L+ +  GAAP     +  LR  +     A +   +G TE S   C     D    +G+V
Sbjct: 291 ALRVLSWGAAPAS---DTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSV 347

Query: 439 GVPMTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIVDGWF 495
           G  + TV AR+        + ++ VP G   EI  R  TL SGY+  P+ T E    GWF
Sbjct: 348 GKVIPTVAARVVD------ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWF 401

Query: 496 HT 497
           H+
Sbjct: 402 HS 403

Length = 542

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 384 RLQAMLSGAAPLPI-HVEEFLRVTSGAPLTQGYGLTESCSGC-FTSL----ADVFNMIGT 437
            L+ ++ G   L    V+ +     GA L   YG TE+      T +    A   + +  
Sbjct: 236 SLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPV-P 294

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGW 494
           +G P+      +        D L  VP    GE+ + G  +  GY  RP+LT E  V   
Sbjct: 295 IGRPLANTRLYVLD------DDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDP 348

Query: 495 F 495
           F
Sbjct: 349 F 349

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 54.8 bits (133), Expect = 6e-08
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 13/93 (13%)

Query: 412 TQGYGLTESCSGCFTSLAD--VFNMIGTVGVPMTTVEARLESV-PEMGYDALSSVPR--- 465
           T  YG+TE+      +  D  +   + TVG  +  +E ++  V PE G     +VPR   
Sbjct: 345 TIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKI--VDPETG----ETVPRGEQ 398

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
           GE+C RG ++  GY+  P+ T E I  DGW HT
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHT 431

Length = 559

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 54.8 bits (132), Expect = 8e-08
 Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 33/200 (16%)

Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
           Q     A++ P    L    V   +V     L+Y E+   A R    + + GV P    G
Sbjct: 516 QLIEAQARQHPERPAL----VFGEQV-----LSYAELNRQANRLAHVLIAAGVGPDVLVG 566

Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
           I      E ++ + A       YVPL      + + ++++ + V +   Q      +L+ 
Sbjct: 567 IAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQ----SHLLAQ 622

Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
           LP            A + S    E  +L         +      +  L P    N++ ++
Sbjct: 623 LPVP----------AGLRSLCLDEPADL------LCGYSGHNP-EVALDPD---NLAYVI 662

Query: 227 YTSGTTGEPKGVVLTNQAIV 246
           YTSG+TG+PKGV +++ A+ 
Sbjct: 663 YTSGSTGQPKGVAISHGALA 682

Length = 3956

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
           GEI +R  +L  GY+ +P+ T E + DGW HT
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHT 446

Length = 567

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 24/87 (27%), Positives = 38/87 (43%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ + A R  + + + G   GD   +YG   P+   A+ AC      YVPL  +  
Sbjct: 17  LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPSQP 76

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL 164
           A  +  I+  A  +      + +  IL
Sbjct: 77  AERIAKILEAAGPAALVADPDDLAYIL 103

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 13/143 (9%)

Query: 365 AAPLLDSLVFSKIREAFGGRLQAML----SGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           A P +  ++  +      GR  A L    S +APL     + L+    AP+   +G+TE+
Sbjct: 273 AVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEA 332

Query: 421 CSGCFTSLADVF----NMIGTVGVPMTTVEARLESVPEMGYDALSSVPR--GEICLRGNT 474
                T+  +      N + + G+   +  A++  V   G D L       GE+ LRG T
Sbjct: 333 THQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIV---GSDGLPLPAGAVGEVWLRGTT 389

Query: 475 LFSGYYKRPDLTEEVIVDGWFHT 497
           +  GY   P +T     DGW  T
Sbjct: 390 VVRGYLGDPTITAANFTDGWLRT 412

Length = 534

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 23/205 (11%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E+   + R    +R+ G+  GD   I   N PE+     A     + Y P+   L 
Sbjct: 12  VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71

Query: 138 ANAVEFIINHAEVSIAFVQENKIPS---ILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
           A  + +I++ +   +  V      +   + + LP     L  +             A  +
Sbjct: 72  AAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVV-------------AGPV 118

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV--LTNQAIVAEVLSV 252
                 +  + +      + P   +T  + ++Y+SGTTG PKG+   L       E   +
Sbjct: 119 P----GFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDP-DEAPGM 173

Query: 253 DQMFVVTGKVCSEEDTYFSFLPLAH 277
               +  G     +  Y S  PL H
Sbjct: 174 MLALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 57/294 (19%), Positives = 96/294 (32%), Gaps = 83/294 (28%)

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEV--------LSVDQMFVVTGKVCSEEDTYFSFL 273
            + + +TSGTTG PK V+ T+   +  +        L  D +          +  + S  
Sbjct: 83  PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142

Query: 274 -PLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
            P                G ++  + G   D    +E ++    T F   P  Y  +   
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRML--- 186

Query: 330 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 389
                                     +++ +             FS +R          +
Sbjct: 187 --------------------------LQQDLSSYD---------FSHLRHV--------V 203

Query: 390 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI--GTVGVPMTTVEA 447
           S   PL   V ++ R  +G P+  GYG TE+              +  G++G P      
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPG---MEVKPGSMGRPAPGY-- 258

Query: 448 RLESVPEMGYDALSSVPRGEICL----RGNTLFSGYYKRPDLTEEVIVDGWFHT 497
           R+  + + G + L     G+I +    R   LF GY K P+ TE  I   W+ T
Sbjct: 259 RVAIIDDEG-NELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLT 311

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 28/87 (32%), Positives = 41/87 (47%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           T+ ++ DA+ R  +A+R  GV  GDR G+Y    PE  IA  A        VPL    G 
Sbjct: 8   TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 139 NAVEFIINHAEVSIAFVQENKIPSILS 165
           +AVE  +  +   +     +  P+IL 
Sbjct: 68  DAVEHRLRDSGARVLVTDGSDDPAILI 94

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 16/203 (7%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
             TY E   AA     A+ + GV  GDR  +   N  E++     C       VP+   L
Sbjct: 46  RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTAL 105

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
               +E I+ ++   +  V+   + ++ +  P   L L  +      +S           
Sbjct: 106 RGPQLEHILRNSGARLLVVEAALLAALEAADPGD-LPLPAVWLLDAPASVSVPAG----- 159

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN-QAIVAEVLSVDQM 255
             +S      L         +   + + I+YTSGTTG  KGV   + Q       S + +
Sbjct: 160 --WSTAPLPPLDAPAPAAAVQP-GDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL 216

Query: 256 FVVTGKVCSEEDTYFSFLPLAHI 278
            +        +D  ++ LPL H 
Sbjct: 217 EIG------ADDVLYTTLPLFHT 233

Length = 542

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 11/118 (9%)

Query: 384 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-MIGTVGVPM 442
            L+  L   AP+P  + E  R   GA +   +G+TE+ +   T L D       T G P+
Sbjct: 313 SLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPL 372

Query: 443 TTVEARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
             VE R+           + +P G+I    +RG + F GY KRP L      DGWF T
Sbjct: 373 PGVEVRVVD------ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLN-GTDADGWFDT 423

Length = 547

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 77/422 (18%), Positives = 130/422 (30%), Gaps = 89/422 (21%)

Query: 78   LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            L+Y E+   A R    +  RGV P    G+      E ++ + A       YVPL     
Sbjct: 3083 LSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYP 3142

Query: 138  ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
               + +++  +   +   Q +    +   +    L                +  E     
Sbjct: 3143 EERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDL---------------DRGDENYA-- 3185

Query: 198  CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
                E    + T+          N++ ++YTSG+TG+PKGV + + A+   +  + Q + 
Sbjct: 3186 ----EANPAIRTM--------PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG 3233

Query: 258  VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFS 317
            +       + T FSF                                    +EL   + S
Sbjct: 3234 LGVGDRVLQFTTFSFDVFV--------------------------------EELFWPLMS 3261

Query: 318  GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI 377
            G   V                     L     N +  ++    P    A L +       
Sbjct: 3262 GARVVLA----------GPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHR-- 3309

Query: 378  REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC-SGCFTSLADVFNMIG 436
                    + +  G A      +   +V +G PL   YG TE+  +       +      
Sbjct: 3310 ---CTSLKRIVCGGEALPA---DLQQQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAV 3363

Query: 437  TVGVPMTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIVDG 493
             +G P+      +         +L  VP G   E+ L G  L  GY+ RP LT E  V  
Sbjct: 3364 PIGRPIANRACYILD------GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPD 3417

Query: 494  WF 495
             F
Sbjct: 3418 PF 3419

Length = 5163

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 21/175 (12%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPLYDTL 136
            TY+E+ + + +F + ++  GV  GDR  I+    PE +   + A  + AI   PL++  
Sbjct: 74  YTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI-VGPLFEAF 132

Query: 137 GANAVEFIINHAE----VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
              AV   +  +E    ++   + E K    L  L       K ++           E  
Sbjct: 133 MEEAVRDRLEDSEAKVLITTPALLERKPADDLPSL-------KHVLLVG--------EDV 177

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
           E G     +   ++  + + ++    + + + + YTSG+TG+PKGV+  + A++ 
Sbjct: 178 EEGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQ 232

Length = 570

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 35/128 (27%)

Query: 391 GAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTV----- 445
           G+A     +E+      G  +   +G+TE+              +GTV      +     
Sbjct: 288 GSALPRSLIEKLEE--RGVEVIHAWGMTETSP------------LGTVSRLKPHLVDLPE 333

Query: 446 EARLESVPEMGY-----------DALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEV 489
           E +LE   + G            D  + +P      GE+ +RG  +   YYK P+ TEE+
Sbjct: 334 EEKLELRAKQGRPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEEL 393

Query: 490 IVDGWFHT 497
             DGWF T
Sbjct: 394 TRDGWFRT 401

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 26/207 (12%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           TY  +  AA R  + + ++G+ PGDR         E+ I   AC       VPL  +   
Sbjct: 51  TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110

Query: 139 NAVEFIIN--HAEVSIA---FVQENKIPSILSC---LPRCCLYLKTIVSFANVSSSQKKE 190
             + +++N   A++  A   F Q   +  IL     LP     L+ IV          K 
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP----QLQQIVGV-------DKL 159

Query: 191 AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
           A     S  S  + +                ++ +++TSGT G PKGV+LT+  I+A   
Sbjct: 160 APAT--SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILAS-- 215

Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAH 277
             ++ +     +   +D +    PL H
Sbjct: 216 --ERAYCARLNLTW-QDVFMMPAPLGH 239

Length = 547

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
            P  K  + +TI+++SG+ GEPKGV+L++  I++ +  +  +F +       +D   S L
Sbjct: 776 GPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLR-----NDDVILSSL 830

Query: 274 PLAH 277
           P  H
Sbjct: 831 PFFH 834

Length = 1146

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 52.5 bits (127), Expect = 4e-07
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           +TY+E++    RF +A++S GV  GDR  IY    PE  +AM AC
Sbjct: 99  ITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143

Length = 637

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 31/227 (13%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           G   + +Y E+ + A R  + +R+ G+ PGD   +      +++ A  AC       VP+
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL--PRCCLYLKTIVSFANVSSSQK-- 188
                        N A          K+ +I   L  P        +   A V++     
Sbjct: 95  ----AVPPTYDEPNAAV--------AKLRNIWELLGSPVI------LTDAALVAALAGLR 136

Query: 189 KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
             A    +   + EE       D  L P +  + + ++ TSG+TG PK VVLT++ I+A 
Sbjct: 137 TRAGLEALRVLAIEELRSAPP-DAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILAR 195

Query: 249 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH--CIHKGCS 293
                Q+   T      +D   +++PL H+   I+  H   ++ GC 
Sbjct: 196 SAGTVQVNGFT-----PDDVSLNWMPLDHV-GGIVMLHLRDVYLGCQ 236

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 52.3 bits (125), Expect = 5e-07
 Identities = 88/424 (20%), Positives = 142/424 (33%), Gaps = 91/424 (21%)

Query: 78   LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            LTY E+   A R   A+ +RGV P    GI      E ++ + A       YVPL     
Sbjct: 4577 LTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYP 4636

Query: 138  ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
               + +++  +  ++   Q +    +L  LP              ++S      E+    
Sbjct: 4637 RERLAYMMEDSGAALLLTQSH----LLQRLP----------IPDGLASLALDRDED---- 4678

Query: 198  CFSWEEFLQLGTLDCELPPKKKT---NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
               WE F           P  +    N++ ++YTSG+TG PKGV +++ ++V  + +  +
Sbjct: 4679 ---WEGF-------PAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGE 4728

Query: 255  MFVVTGKVCSEEDTYFSF-LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKP 313
             + +T      +   FSF      +Y  +I    +        W  D   L  +I E + 
Sbjct: 4729 RYELTPDDRVLQFMSFSFDGSHEGLYHPLINGASVVIRDD-SLW--DPERLYAEIHEHRV 4785

Query: 314  TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV 373
            T+    P                            Y  +L        ++   P L    
Sbjct: 4786 TVLVFPP---------------------------VYLQQLAE---HAERDGEPPSLRVYC 4815

Query: 374  FSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN 433
            F    EA       +   A                  L  GYG TE+        A   +
Sbjct: 4816 FGG--EAVAQASYDLAWRALK-------------PVYLFNGYGPTETTVTVLLWKARDGD 4860

Query: 434  MIGTVGVPMTTVEARLESVPEMGY---DALSSVP---RGEICLRGNTLFSGYYKRPDLTE 487
              G   +P+ T           GY     L+ +P    GE+ L G  +  GY +RP LT 
Sbjct: 4861 ACGAAYMPIGTPLGNRS-----GYVLDGQLNPLPVGVAGELYLGGEGVARGYLERPALTA 4915

Query: 488  EVIV 491
            E  V
Sbjct: 4916 ERFV 4919

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 52.3 bits (125), Expect = 6e-07
 Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 32/183 (17%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L Y E+   A R   A+  RGV P    G+      E ++A+ A       YVPL     
Sbjct: 537 LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYP 596

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  + +++  + V +   Q +        LP                      A  + V 
Sbjct: 597 AERLAYMLEDSGVQLLLSQSHLGRK----LPL---------------------AAGVQVL 631

Query: 198 CF----SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                 +W E         EL P+   N++ ++YTSG+TG+PKG    ++A+   +  + 
Sbjct: 632 DLDRPAAWLEGYSEENPGTELNPE---NLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQ 688

Query: 254 QMF 256
           Q +
Sbjct: 689 QAY 691

Length = 5163

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 385 LQAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-MIGTVGVPM 442
           L+  L G   +P     E  +   G  L   YG TES      +L D  +  + T G   
Sbjct: 304 LRFFLCGGTTIPKKVARECQQ--RGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAA 361

Query: 443 TTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
             VE ++        +A  ++P G   E   RG  +F GY   P+LT   +  +GW+++
Sbjct: 362 AGVEIKVVD------EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYS 414

Length = 547

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 51.2 bits (123), Expect = 8e-07
 Identities = 21/78 (26%), Positives = 36/78 (46%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E+ +   R    ++ +GV  GDR  +Y  N P+++IA  A        VP+     
Sbjct: 2   ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61

Query: 138 ANAVEFIINHAEVSIAFV 155
              +E I+N +   +  V
Sbjct: 62  EAELEHILNDSGARVLIV 79

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.9 bits (124), Expect = 8e-07
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 37/201 (18%)

Query: 78   LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            L+Y E+   A R    +R+RGV P  R  I      E ++A+ A       YVPL D   
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPL-D--- 2084

Query: 138  ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL--- 194
                    N+    +A++ E+                    S A +  +Q+   E L   
Sbjct: 2085 -------PNYPAERLAYMLED--------------------SGAALLLTQRHLLERLPLP 2117

Query: 195  -GVSCFSWEEFLQLGTLDCELPPKK--KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
             GV+    +   +        P  +    N++ ++YTSG+TG PKGV +++ A+VA   +
Sbjct: 2118 AGVARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQA 2177

Query: 252  VDQMFVVTGKVCSEEDTYFSF 272
              + + ++   C  +   FSF
Sbjct: 2178 AGERYELSPADCELQFMSFSF 2198

Length = 5163

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 11/108 (10%)

Query: 391 GAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLE 450
           G A +P  V E L+  +G    +GYGLTE+ +   ++  D   +   +G+P   V+AR+ 
Sbjct: 313 GGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKL-QCLGIPTFGVDARV- 370

Query: 451 SVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV--DG 493
               +  + L  +P    GEI + G  +F GY+ RP+ T E  +  DG
Sbjct: 371 ----IDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDG 414

Length = 546

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 20/76 (26%), Positives = 40/76 (52%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
            L+Y E+ + + +  + +R+ GV PGDR G+      + + A+ A       YVPL  + 
Sbjct: 12  TLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSY 71

Query: 137 GANAVEFIINHAEVSI 152
            A  +++++  AE ++
Sbjct: 72  PAERLQYMLEDAEPAL 87

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 23/253 (9%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN-SQAITYVPLYDTLG 137
           TY++    A +   A+ + GV PGDR G    N    + A    + S A+ +  +   L 
Sbjct: 41  TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHT-INPRLF 99

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + +I+NHAE          +P + +  P+C      +  +  ++ +    A    + 
Sbjct: 100 PEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQC----PNVKGWVAMTDAAHLPAGSTPLL 155

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV----AEVLSVD 253
           C+  E  +     D + P   +   S++ YTSGTTG PKG + ++++ V       L  D
Sbjct: 156 CY--ETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALP-D 212

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQE 310
            M        S  D     +P+ H+    +       G  +    G   D + L E I+ 
Sbjct: 213 AM------GLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVL-PGPDLDGKSLYELIEA 265

Query: 311 LKPTMFSGVPRVY 323
            + T  +GVP V+
Sbjct: 266 ERVTFSAGVPTVW 278

Length = 539

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 385 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV-GVPMT 443
           L   L   AP+P  + E      GA +   +G+TE+ +   T   D      T  G P+ 
Sbjct: 312 LFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLP 371

Query: 444 TVEARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
            VE ++         A   + +GE     +RG + F GY KRP L      +GWF T
Sbjct: 372 GVEVKVID----ANGA--KLSQGETGRLLVRGCSNFGGYLKRPHLN-STDAEGWFDT 421

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 378 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM-IG 436
           R  +  RL+A+ SG   L   + E+ R   G  + + YG TE  +    + A +     G
Sbjct: 202 RARYDLRLRAVASGGESLGEELLEWARDELGLTVNEFYGQTE-ANLVVGNCAALGPARPG 260

Query: 437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICL-RGN-TLFSGYYKRPDLTEEVIVDGW 494
           ++G P+      +  V + G         GEI + R +  +F GY+  P+ T       W
Sbjct: 261 SMGKPVPG--HEVAVVDDAGRPVPPGE-VGEIAVKRPDPVMFLGYWNNPEATAAKFAGDW 317

Query: 495 FHT 497
             T
Sbjct: 318 LLT 320

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 27/161 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTYQ++ + + R  + ++ R +       +YG   P  ++A          Y+P+  ++ 
Sbjct: 26  LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIP 85

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           +  +E II  A      +   ++                      ++ S  ++AE  G  
Sbjct: 86  SERIEMIIEAAGPE-LVIHTAELSIDAVGTQI-------------ITLSALEQAETSG-- 129

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
                     G +  +   K   N   I YTSG+TG PKGV
Sbjct: 130 ----------GPVSFDHAVKGDDNYYII-YTSGSTGNPKGV 159

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 74/279 (26%), Positives = 105/279 (37%), Gaps = 80/279 (28%)

Query: 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276
           K   +++ I++TSGT   PKGV LT+  ++A   +  + F        E+D   SFLP  
Sbjct: 180 KDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPK-----EDDVMMSFLPPF 234

Query: 277 HIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336
           H Y               GF          +   L P + SGVP V+           + 
Sbjct: 235 HAY---------------GF----------NSCTLFP-LLSGVPVVF-----------AY 257

Query: 337 GGALSKKLFEFA--------------YNYKLGNMKKGMPQNKAAPLLDSLVFSKI-REAF 381
                KK+ E                ++Y L   KK   Q      L SL F  I  +AF
Sbjct: 258 NPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK---QESC---LPSLRFVVIGGDAF 311

Query: 382 GGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT-SLADVFNMIGTVGV 440
              L              +E L+      L QGYG TE CS   T +  +       VG+
Sbjct: 312 KDSLY-------------QEALKTFPHIQLRQGYGTTE-CSPVITINTVNSPKHESCVGM 357

Query: 441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY 479
           P+  ++  +  V E     +SS   G +  RG +LFSGY
Sbjct: 358 PIRGMDVLI--VSEETKVPVSSGETGLVLTRGTSLFSGY 394

Length = 539

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 69  DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
           DG V  +   TY E+     R  S + + G+  GDR GIY    PE ++A+ A       
Sbjct: 2   DGSVRTW---TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58

Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQE 157
            VP++   G +AV   +  AE  +    +
Sbjct: 59  AVPIFSGFGPDAVATRLQDAEAKVLITAD 87

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           T+ E+ + + R  + ++  GV  GDR  +     PE    +  C      ++P    LG 
Sbjct: 2   TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61

Query: 139 NAVEFIINHAE 149
             + + +  A 
Sbjct: 62  KDIRYRLERAG 72

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 27/161 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY ++ + +    + + S  +       ++G   PE +            Y+P+  +  
Sbjct: 28  LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSP 87

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  +E II  A+ S+    E     IL            +++   +              
Sbjct: 88  AERIEMIIEVAKPSLIIATEELPLEILGI---------PVITLDELK------------- 125

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
               + F      D +   K   N   I +TSGTTG+PKGV
Sbjct: 126 ----DIFATGNPYDFDHAVKGDDNYYII-FTSGTTGKPKGV 161

Length = 503

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 382 GGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP 441
             R++  L    P  +H     R   G  L  GYG TE+      +        G++G  
Sbjct: 293 AHRVRVALGPGVPAALHAAFRERF--GVDLLDGYGSTETNFVIAVTHGS--QRPGSMGRL 348

Query: 442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLF---SGYYKRPDLTEEVIVDGWFHT 497
               EAR+  V E   +     P GE+ LR +  F   +GY+  P+ T E   + WFHT
Sbjct: 349 APGFEARV--VDEHDQELPDGEP-GELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHT 404

Length = 542

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           +TY+E++    RF + ++S GV  GDR  IY    PE  IAM AC
Sbjct: 89  ITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC 133

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           +TY+E+Y    RF + ++S GV  GDR  IY    PE  IAM AC
Sbjct: 79  ITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 29/105 (27%)

Query: 408 GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV--PEMGYDA------ 459
           G  L   YG+TE+             ++G +G      + R  S+  P   Y+A      
Sbjct: 312 GVRLLTSYGMTET-------------IVGIIGDRPGD-KRRWPSIGRPGFCYEAEIRDDH 357

Query: 460 ---LSSVPRGEICLRG---NTLFSGYYKRPDLTEEVI-VDGWFHT 497
              L +   GEIC++G    T+F  YY  P  T +V+  DGW HT
Sbjct: 358 NRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHT 402

Length = 517

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 11/182 (6%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +T+ E+        +A+R+ GV PGDR   Y  N P+ ++AM A  S    +       G
Sbjct: 115 VTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFG 174

Query: 138 ANAVEFIINHAEVSIAFVQE-----NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
           A  V       E  + F  +      K       +      L T+ +  ++     +E E
Sbjct: 175 ARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETE 234

Query: 193 ELGV-SCFSWEEFL---QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
              +      E+F    Q   L  E  P    +   I+++SGTTG PK +V +    + +
Sbjct: 235 APKIDGALDLEDFTAAAQAAELVFEQLP--FDHPLWILFSSGTTGLPKCIVHSAGGTLVQ 292

Query: 249 VL 250
            L
Sbjct: 293 HL 294

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 25/88 (28%)

Query: 414 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN 473
           GYGLTE  S      AD    +  VG P+   E +L                GEI LRG 
Sbjct: 270 GYGLTEMASTVCAKRAD---GLAGVGSPLPGREVKLVD--------------GEIWLRGA 312

Query: 474 TLFSGYYK----RPDLTEEVIVDGWFHT 497
           +L  GY++     P L  +   +GWF T
Sbjct: 313 SLALGYWRQGQLVP-LVND---EGWFAT 336

Length = 458

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 46.3 bits (111), Expect = 3e-05
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 67  VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           +  G+ GP   L++ E+        +A+R+ GV PGDR   Y  N PE ++AM A  S
Sbjct: 104 IFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATAS 161

Length = 655

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 39/123 (31%), Positives = 50/123 (40%), Gaps = 22/123 (17%)

Query: 388 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE----SCSGCFTSLADVFNMIGTVGVPM- 442
            L G   LP  + E L  T GA L   YG TE    S     T+         T+G P+ 
Sbjct: 211 ALCGGEALPRDLAERLLST-GAELWNMYGPTETTIWSTCARVTAADGP----VTIGRPIA 265

Query: 443 -TTV---EARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTE 498
            T V   +  L+ VP         VP GE+ + G+ +  GY  RP+LT E  V   F   
Sbjct: 266 NTQVYVLDEDLQPVPP-------GVP-GELYIGGDGVARGYLGRPELTAERFVPDPFDDP 317

Query: 499 VHR 501
             R
Sbjct: 318 GGR 320

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 13/62 (20%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC----SEEDTYFSFLPLA 276
           +   I +TSGTTG PKGV +++ A++ + L+         K+      E+D Y    PL 
Sbjct: 173 DAVLICFTSGTTGRPKGVTISHSALIVQSLA---------KIAIVGYGEDDVYLHTAPLC 223

Query: 277 HI 278
           HI
Sbjct: 224 HI 225

Length = 563

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 20/117 (17%)

Query: 223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282
           + ++YTSGTTG PKG  ++ +        V    +         D  ++ +PL H     
Sbjct: 90  AALIYTSGTTGLPKGCAISWRR-----TLVTSNPLSHDLNLQFPDRTYTCMPLYHGTAAF 144

Query: 283 IET-HCIHKGCSIG---------FWRGDVR----YLMEDIQELKPTMFSGVPRVYDR 325
           +   +C+  G ++          FW+ DVR     +++ + EL   + +  P  YDR
Sbjct: 145 LGLCYCLGSGGTLCLSRKFSASQFWK-DVRDSEATIIQYVGELCRYLLATPPSPYDR 200

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 17/64 (26%), Positives = 27/64 (42%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            +YQE+ + + RF + + S GV  G+R        PE  +A          Y PL+   G
Sbjct: 1   YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60

Query: 138 ANAV 141
              +
Sbjct: 61  PEPI 64

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 22/187 (11%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            T+ + YD   R  +++ S  +   D   +   N P       A         P+   L 
Sbjct: 40  FTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLD 99

Query: 138 ANAVEFIINHAEVSIAFVQENKIP---SILSCLPRCCLYLKTIVSFAN-VSSSQKKEAEE 193
           A ++  I+ HA+  I FV  +  P    +L  L      L   V F + +   ++  +EE
Sbjct: 100 ATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEE 159

Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM---------YTSGTTGEPKGVVLTNQA 244
           L      +E  +Q G    E  P     +  I          YTSGTT +PKGVV++++ 
Sbjct: 160 L-----DYECLIQRG----EPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRG 210

Query: 245 IVAEVLS 251
                LS
Sbjct: 211 AYLSTLS 217

Length = 579

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 43/140 (30%), Positives = 58/140 (41%), Gaps = 27/140 (19%)

Query: 366 APLLDSLVFSKIREAFGGRLQAMLSG--AAPLPIHVEEFLRVTSGAPLTQGYGLTE---- 419
           A L + LV  +  EA  G L+ +L G        HV   L    G  L  GYG TE    
Sbjct: 225 AALFNQLV-DEDPEALAG-LRQLLVGGDVLSPA-HVRRVLAACPGLRLINGYGPTENTTF 281

Query: 420 SCSGCFTSLADVFNMIGTV--GVPM--TTV---EARLESVPEMGYDALSSVPRGEICLRG 472
           S   C   +  +     ++  G P+  TTV   +   + VP         VP GE+ + G
Sbjct: 282 ST--CH-VITRLDEAADSIPIGRPIPNTTVYILDEEGQPVPI-------GVP-GELYVGG 330

Query: 473 NTLFSGYYKRPDLTEEVIVD 492
           + L  GY  RP+LT E  V 
Sbjct: 331 DGLALGYLNRPELTAERFVP 350

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 204 FLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM-- 255
            +++  LD       +  P+   + + + YTSG+T  P GV+++++ ++A   + +Q+  
Sbjct: 138 VIEVDLLDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIA---NFEQLMS 194

Query: 256 --FVVTGKVCSEEDTYFSFLPLAH 277
             F  TG V   + T  S+LP  H
Sbjct: 195 DYFGDTGGVPPPDTTVVSWLPFYH 218

Length = 578

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 32/204 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRC--GIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
            +++E    +    +A+R+R ++P      G+   N PE+ + + A     I  V L  T
Sbjct: 29  TSWREHIRGSAARAAALRAR-LDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPT 87

Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
               A+   I HA+  +   +      +    P         V   NV S          
Sbjct: 88  RRGAALARDIAHADCQLVLTESAHAELLDGLDPG--------VRVINVDSPA-------- 131

Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIM--YTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                W + L     D E P +        M  +TSGT+G+PK V  T++ + +  + + 
Sbjct: 132 -----WADELA-AHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLA 185

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAH 277
           Q F +       +D  +  +PL H
Sbjct: 186 QRFGL-----GPDDVCYVSMPLFH 204

Length = 529

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 24/161 (14%)

Query: 83  VYDAAIRFGSAM-RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAV 141
            +   I   + M  +RG+  GD   +   N   ++    A +     ++P+   L A+ V
Sbjct: 32  EFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEV 91

Query: 142 EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201
            +I+  A   +  V E         +    L    IV  A   +  ++            
Sbjct: 92  AYILGDAGAKLLLVDEE-----FDAIV--ALETPKIVIDAAAQADSRR------------ 132

Query: 202 EEFLQLGTLDC-ELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
              L  G L+         T++  +MYTSGTT  PKGV+ +
Sbjct: 133 ---LAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHS 170

Length = 497

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 9/44 (20%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSV---------DQMFVVT 259
           ++YTSG+TG+PKGV ++++A+V  +LS+         D++  VT
Sbjct: 98  VIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAVT 141

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIV 246
           I++TSG+TG PKGV++   AIV
Sbjct: 603 IIFTSGSTGRPKGVMVGQTAIV 624

Length = 1296

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 54/197 (27%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ D   +  + ++  GV  GD   IY     E  IAM AC             +G
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACAR-----------IG 169

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL------------YLKTIVSFANVSS 185
           A        H+ V   F  E+    I+ C P+  +             LK IV  A   S
Sbjct: 170 A-------VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDES 222

Query: 186 SQKKEAEELGVSCFS---------------------WEEFLQLGTLDCELPPKKKTNIST 224
           +  K    +G+ C +                     W++ +      CE+      +   
Sbjct: 223 A--KNGVSVGI-CLTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLF 279

Query: 225 IMYTSGTTGEPKGVVLT 241
           ++YTSG+TG+PKGV+ T
Sbjct: 280 LLYTSGSTGKPKGVLHT 296

Length = 666

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 50/240 (20%), Positives = 86/240 (35%), Gaps = 55/240 (22%)

Query: 78  LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           +TY EV   + +   A+ +  G+ PGD   +   N P ++                    
Sbjct: 4   VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFL-------------------- 43

Query: 137 GANAVEFIINHAEVSIAFVQEN-KIPSILSCLPRCCLYLKTIVSFANVSSSQKK---EAE 192
               +   +       AF+  N +  S+L C  RCC   + +V+   +  + ++      
Sbjct: 44  ---WIWLGLAKLGCPTAFLNTNIRSGSLLHCF-RCC-GARVLVADPELLEAVEEILPALR 98

Query: 193 ELGVSCF---------SWEEFLQL--GTLDCELPPKKKTNISTIM------YTSGTTGEP 235
            +GV  F              L       D E  P    +  +I       YTSGTTG P
Sbjct: 99  AMGVRVFYLSHTSPPEGVISLLAKVDAASD-EPVPASLRSGVSIRSTALYIYTSGTTGLP 157

Query: 236 KGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSI 294
           K   +++      VL    M  + G   + +D  ++ LPL H    ++    CI  G ++
Sbjct: 158 KAARISHL----RVLQCSGMLSLCG--VTADDVVYTTLPLYHSSGALLGIVGCIGLGATL 211

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
            T+++++D   R  + +RS GV  GDR  IY     E   AM AC
Sbjct: 85  YTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLAC 129

Length = 629

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276
           ++YTSG+TG+PKGVV+T++ I   + +   +  +        D    F  +A
Sbjct: 104 VIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIR-----PGDRVLQFASIA 150

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           LTY++++     F SA+R+ GV  GDR  IY     E + AM AC
Sbjct: 84  LTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLAC 128

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 43.2 bits (103), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           LTY+E+ + A R    +R+RGV PGD   I     PE ++A+      A+      YVPL
Sbjct: 13  LTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAI-----LAVLKAGAAYVPL 67

Query: 133 YDTLGANAVEFIINHAEVSIAFVQ 156
                A  + +++  +   +    
Sbjct: 68  DPAYPAERLAYMLEDSGAKLLLTD 91

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 32/123 (26%)

Query: 394 PLPI-HVEEFLRVTSGAPLTQGYGLTESCSGC------------FTSLADVFNMIGTV-- 438
            LP    +   R    A +   YG TE+                   L      IG    
Sbjct: 225 VLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLP-----IGYPKP 279

Query: 439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTE 498
           G+    ++     VP            GE+ + G  +  GY   P+ T +     +F  E
Sbjct: 280 GLRALILDEDGRPVPP--------GEEGELVIAGPQVSPGYLNNPEKTAKA----FFQDE 327

Query: 499 VHR 501
             R
Sbjct: 328 GQR 330

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 43/213 (20%), Positives = 75/213 (35%), Gaps = 22/213 (10%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           G     +Y+E+     R    +   GV  GD       N  E+     AC        PL
Sbjct: 49  GAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPL 108

Query: 133 YDTLGANAVEFIINHAEVSI--------AFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
                   + F++NHA+  +         F        + S LP     L+ +V    V 
Sbjct: 109 MPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLP----ALRQVV----VI 160

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
                ++ +  +     ++      +    P     +++ ++YTSGTTGEPKGV+ T   
Sbjct: 161 DGDGDDSFDRVLMTPERDDTPDAAAI-LAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANT 219

Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
           + + +    +   +        D      P+AH
Sbjct: 220 LFSNIHPYAERLEL-----GGGDVILMASPMAH 247

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSF 272
              +   + + I++TSG+ G PKGVVL+++ ++A          V  ++  S ED  F+ 
Sbjct: 787 FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLA------NRAQVAARIDFSPEDKVFNA 840

Query: 273 LPLAH 277
           LP+ H
Sbjct: 841 LPVFH 845

Length = 1140

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 23/126 (18%)

Query: 389  LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV---------FNMIGTVG 439
            ++GA  L   V +      G  + +GYG TE+      +L DV          +  G+VG
Sbjct: 904  VAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVG 963

Query: 440  VPMTTVEARLESV-PEMGYDALSSVPRGE---ICLRGNTLFSGYYKRPDLTEEVIVD--- 492
            +P+  V  R+  V PE        +P GE   I + G  +  GY   P+ T EVI D   
Sbjct: 964  MPLPGVAVRI--VDPE----TFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDG 1017

Query: 493  -GWFHT 497
             GW+ T
Sbjct: 1018 IGWYVT 1023

Length = 1146

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 32/206 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+Y+++   A    +A+++R    GDR  +   + P+++ A   C    +  VP Y    
Sbjct: 41  LSYRDLDLRARTIAAALQARAS-FGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP--- 96

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
                      E +    QE  +  I    PR  L   T+    +       + EEL  +
Sbjct: 97  ----------PESARRHHQERLLSIIADAEPRLLL---TVADLRD----SLLQMEELAAA 139

Query: 198 CFSWEEFLQLGTLDCEL------PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
             +  E L + TLD  L      P  +  +I+ + YTSG+T  PKGV +++  +VA    
Sbjct: 140 --NAPELLCVDTLDPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQL 197

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAH 277
           +   F   G   + +D   S+LPL H
Sbjct: 198 IRHGF---GIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 32/206 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+        + + +RGV P  R  +   N  + +IA+ A +        +   L 
Sbjct: 29  LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88

Query: 138 ANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEEL 194
              +  +I   E++ A +  +   + +I         L L  +V               L
Sbjct: 89  PAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDLV--------------GL 134

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
           G    +            E PP++    + + YTSGTTG PKG V+  +A  + VL    
Sbjct: 135 GEPESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVL---- 182

Query: 255 MFVVT--GKVCSEEDTYFSFLPLAHI 278
            F+ T  G      +     +PL H+
Sbjct: 183 -FMSTQAGLRHGRHNVVLGLMPLYHV 207

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
           L+Y E    A R+  A+R+ GV  GD   +   N PE+++A  A  
Sbjct: 4   LSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALA 49

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 49/180 (27%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY+E+ + + R     RS G+  GD   I+  N   ++    A     + Y  +   L 
Sbjct: 25  VTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLT 84

Query: 138 ANAVEFIIN----------HAEVSIAFVQENKIPSILSCLPRCCLYLKT-----IVSFAN 182
                +I++           A++ +A     + P +   L    +          V +A 
Sbjct: 85  PAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRL----VLDGDGELEGFVGYAE 140

Query: 183 VSSSQKK---EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
             +         E LG                             ++Y+SGTTG PKG+ 
Sbjct: 141 AVAGLPATPIADESLGTD---------------------------MLYSSGTTGRPKGIK 173

Length = 511

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 6/163 (3%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            ++ E+   A R    + + GV PGD   +   N   +  A  A        VP+     
Sbjct: 12  RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFK 71

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + +I+  +   +     + +  + S LP     L ++ +   ++++ +     L   
Sbjct: 72  PEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVL-SVPTPPEIAAAYRISPALLTPP 130

Query: 198 CFS--WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
             +  WE +L       + PP  +    +++YTSGTTG PKGV
Sbjct: 131 AGAIDWEGWLAQQEP-YDGPPVPQP--QSMIYTSGTTGHPKGV 170

Length = 509

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 42.2 bits (100), Expect = 6e-04
 Identities = 44/244 (18%), Positives = 79/244 (32%), Gaps = 54/244 (22%)

Query: 51  DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110
           ++A R P+   L    + + +      ++Y E+   A R+     +RGV  GD   +   
Sbjct: 45  EAAARHPDRPAL----LFEDQS-----ISYAELNARANRYAHWAAARGVGKGDVVALLME 95

Query: 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFI------------INHAEVSIAFVQEN 158
           N PE++ A                 LGA  V  +            +N  +     V E 
Sbjct: 96  NRPEYLAAWLGLAK-----------LGA-VVALLNTQQRGAVLAHSLNLVDAKHLIVGEE 143

Query: 159 KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKK 218
                   +       +   +             +       +E+            P  
Sbjct: 144 -------LVEAF----EEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPAS 192

Query: 219 KTNIS---TIMY--TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
           ++ ++   T  Y  TSGTTG PK  V+++       L     F    ++ + +D  +  L
Sbjct: 193 RSGVTAKDTAFYIYTSGTTGLPKAAVMSH----MRWLKAMGGFGGLLRL-TPDDVLYCCL 247

Query: 274 PLAH 277
           PL H
Sbjct: 248 PLYH 251

Length = 600

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 67/294 (22%), Positives = 108/294 (36%), Gaps = 56/294 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ + +      + + GV  GD   +   N   +++A+ A   +    + L +T G
Sbjct: 75  LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAG-KVGARIILLNT-G 132

Query: 138 ANAVEFIINHAEVSI-----AFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
            +  +     AEV+      A V +++   +LS LP     L+                +
Sbjct: 133 FSGPQL----AEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGG----------NPD 178

Query: 193 ELGVSCFSWEEFLQL-GTLDCELPPKKKTNISTIMYTSGTTGEPKGVV---LTNQAIVAE 248
           +   S  + E    L         PK       ++ TSGTTG PKG      +  A +A 
Sbjct: 179 DDEPSGSTDETLDDLIAGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAG 238

Query: 249 VLS-----VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVR 302
           +LS       +  ++   +       F     AH+   +        G ++   R  D  
Sbjct: 239 LLSRVPFRAGETTLLPAPM-------FHATGWAHL--TLAMAL----GSTVVLRRRFDPE 285

Query: 303 YLMEDIQELKPTMFSGVPRVYDRI----------YTGISNKI--SSGGALSKKL 344
             +EDI + K T    VP +  RI          Y   S KI   SG ALS +L
Sbjct: 286 ATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPEL 339

Length = 549

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 33/118 (27%)

Query: 384 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMT 443
            L A+L G  P P  V +     +G  + + YG++E+  GC      V++     GVP+ 
Sbjct: 152 ELDAVLVGGGPAPAPVLD-AAAAAGINVVRTYGMSETSGGC------VYD-----GVPLD 199

Query: 444 TVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY---KRPDLTEEVIVDGWFHTE 498
            V  R+E               G I L G TL  GY          E     GWF T+
Sbjct: 200 GVRVRVED--------------GRIALGGPTLAKGYRNPVDPDPFAEP----GWFRTD 239

Length = 358

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 25/132 (18%)

Query: 383 GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC-FTSLADVFNMI------ 435
           G +  +  G+ P    V++  R+  G  +   YGLTE+     F    D +N +      
Sbjct: 301 GPVHVLTGGSPPPAALVKKVQRL--GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 436 ------GTVGVPMTTVEAR----LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 485
                 G   + +  V+ +     ESVP  G         GEI ++G+++  GY K P  
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPRDGKTM------GEIVIKGSSIMKGYLKNPKA 412

Query: 486 TEEVIVDGWFHT 497
           T E    GW +T
Sbjct: 413 TSEAFKHGWLNT 424

Length = 579

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 41.4 bits (98), Expect = 9e-04
 Identities = 10/23 (43%), Positives = 19/23 (82%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVA 247
           I++TSG+TG+PKGV +++  + +
Sbjct: 102 ILFTSGSTGKPKGVQISHANLAS 124

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 13/17 (76%), Positives = 15/17 (88%)

Query: 225 IMYTSGTTGEPKGVVLT 241
           I+YTSGTTG+PKG V T
Sbjct: 105 IIYTSGTTGKPKGTVHT 121

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 47  QFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR 104
           +     A+R P+   +  G              LTY E+   A R  + +R+ GV P  R
Sbjct: 3   ELVEAQAERTPDAIAVVCGDES-----------LTYAELNRRANRLAARLRAAGVGPESR 51

Query: 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 156
            G+     P+ ++A+ A       YVPL        + +I+  A   +    
Sbjct: 52  VGVCLRRSPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTD 103

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
           +++ ++YTSGTTGEPKGV+ T   ++A ++   +   +       +D      P+AH
Sbjct: 198 DVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGA-----DDVILMASPMAH 249

Length = 547

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 45/186 (24%)

Query: 76   VW----LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
            VW    L Y E++  A R    +R +GV P     I     P+ ++ + A       YVP
Sbjct: 1151 VWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVP 1210

Query: 132  LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
            L     A  + +++  + V +   Q      +L  LP+                     A
Sbjct: 1211 LDPDYPAERLAYMLADSGVELLLTQS----HLLERLPQ---------------------A 1245

Query: 192  EELGVSCFSWEEFLQLGTLDCELPPKKKT-------NISTIMYTSGTTGEPKGVVLTNQA 244
            E  GVS       + L +L  +  P +         N++ ++YTSG+TG+PKGV  T+ A
Sbjct: 1246 E--GVSA------IALDSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAA 1297

Query: 245  IVAEVL 250
            + AE L
Sbjct: 1298 L-AERL 1302

Length = 4334

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 44/178 (24%), Positives = 61/178 (34%), Gaps = 29/178 (16%)

Query: 347 FAYNYKLGNMKKG-----MPQNKAAPLLDSLVFSKIREAFGG-----RLQAMLSGAAPLP 396
           F ++  LG +  G      P   AA    +L   ++   FG      R+       A  P
Sbjct: 235 FGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERADFP 294

Query: 397 IHVEEF--------------LRVTSGAPLTQGYGLTE--SCSGCFTSLADVFNMIGTVGV 440
                F              L    G PLT  YG +E  +      +   V   I   G 
Sbjct: 295 -SARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGR 353

Query: 441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
           P +  EAR+ +        L     GEI +R  +L  GY   PD T   +  DG+F T
Sbjct: 354 PASP-EARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRT 410

Length = 540

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 32/209 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L Y+E+        + +R++ V+ G R  +   N PE  +++ AC       V     L 
Sbjct: 42  LRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLP 101

Query: 138 ANAVEF---IINHAEVSIA---FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
             A+E    I + A   +A    +  + +P  L  +P   + +  +   +  S      A
Sbjct: 102 IAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLA 161

Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EV 249
                           G+ D             +++TSGTTGEPK V+L N+   A  ++
Sbjct: 162 GNAD-----------QGSEDP----------LAMIFTSGTTGEPKAVLLANRTFFAVPDI 200

Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
           L  + +  VT  V    +T +S LP  HI
Sbjct: 201 LQKEGLNWVTWVV---GETTYSPLPATHI 226

Length = 540

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 12/15 (80%), Positives = 15/15 (100%)

Query: 225 IMYTSGTTGEPKGVV 239
           I+YTSG+TG+PKGVV
Sbjct: 230 ILYTSGSTGKPKGVV 244

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 19/91 (20%)

Query: 413  QGYGLTESCSG--CFTSLADVFNMIGTVGVPMTTVEARLESVP--EMGYDALSSVPRGEI 468
            +GYG+TE+       T +    N  GTVG  +  +E RLE VP  + G         G +
Sbjct: 937  EGYGVTETAPVIALNTPM---HNKAGTVGRLLPGIEYRLEPVPGIDEG---------GRL 984

Query: 469  CLRGNTLFSGYYK--RPDLTEEVIVDGWFHT 497
             +RG  +  GY +   P + E    DGW+ T
Sbjct: 985  FVRGPNVMLGYLRAENPGVLEP-PADGWYDT 1014

Length = 1140

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 17/121 (14%)

Query: 385 LQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGLTESCSGCFTSLADVF--------NM 434
           L+ ++S  AP+PI V E  R  +   A +   YG TE+         ++         N 
Sbjct: 290 LRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNG 349

Query: 435 IGT-VGVPMTTVEARLESVPEMGYDALSSVPR------GEICLRGNTLFSGYYKRPDLTE 487
            G  VG P+  VE R+ ++ +          R      GEI + G  +   YY RP+ T 
Sbjct: 350 AGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATR 409

Query: 488 E 488
            
Sbjct: 410 L 410

Length = 552

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	501
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.96
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.95
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.95
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.9
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.82
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.8
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.72
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.68
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.6
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.04
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.29
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	95.07
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	92.29
PLN02247	606	indole-3-acetic acid-amido synthetase	86.72
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	86.04
PLN02620	612	indole-3-acetic acid-amido synthetase	84.86
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	84.16

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=2.1e-69  Score=536.62  Aligned_cols=474  Identities=42%  Similarity=0.731  Sum_probs=421.7

Q ss_pred             CCccccccc--CCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCC
Q 010774           23 GPVYRCIYA--KDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (501)
Q Consensus        23 ~~~~~~~~~--~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~  100 (501)
                      ++++|+...  ...++....+..|+++.|.+.+..+|+.+++-.....+ ..++++++||+|+.+++.+++..|+++|++
T Consensus        53 ~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~  131 (691)
T KOG1256|consen   53 DGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVK  131 (691)
T ss_pred             CCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence            378888777  45555556789999999999999999999998873322 557889999999999999999999999999


Q ss_pred             CCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEc-CCChhhhhhcCcc-CCCCccEEE
Q 010774          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ-ENKIPSILSCLPR-CCLYLKTIV  178 (501)
Q Consensus       101 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~-~~~~~~~~~~~~~-~~~~~~~v~  178 (501)
                      +++.|+|+.-|++||+++.+||...|.+++||..+++++++.++++.+.+.++|++ ++.+..+.+.... ..+.++.++
T Consensus       132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI  211 (691)
T KOG1256|consen  132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII  211 (691)
T ss_pred             CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence            99999999999999999999999999999999999999999999999999999999 5566666665554 367899999


Q ss_pred             EecCCChhhHHHhhhcCceEeeHHHHHhcC-CCCCCC-CCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceee
Q 010774          179 SFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCEL-PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  256 (501)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~  256 (501)
                      .++......+......++.+.+|+++.+.+ .....+ .+..+++.+.|+|||||||.||||++||+|++..+..+....
T Consensus       212 ~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~  291 (691)
T KOG1256|consen  212 QLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLS  291 (691)
T ss_pred             EecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhh
Confidence            999999988888888899999999999888 333333 477899999999999999999999999999999665322211


Q ss_pred             -eeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecCCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhh
Q 010774          257 -VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS  335 (501)
Q Consensus       257 -~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (501)
                       .........+|++++++||.|++..++-...++.|+.+.+.++|+..+.+.+++.+||.+.++|.+++++.+.+++...
T Consensus       292 ~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~  371 (691)
T KOG1256|consen  292 AAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQ  371 (691)
T ss_pred             hcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHh
Confidence             1111233447999999999999999987777899999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHh-hhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeee
Q 010774          336 SGGALSKKLFEFAYNYKL-GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQG  414 (501)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~  414 (501)
                      ..++++++++++|..+|. ..+.+|.... ..+.++++.++++++.+|+++|.+++|++|+++++.+.|+..+|+.|+++
T Consensus       372 ~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eG  450 (691)
T KOG1256|consen  372 KSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEG  450 (691)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeec
Confidence            999999999999999999 6688887775 68999999999999999999999999999999999999999999999999


Q ss_pred             ecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccC
Q 010774          415 YGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDG  493 (501)
Q Consensus       415 yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dg  493 (501)
                      ||+||+++.++...+++. ..+++|.|+|+++++++|+++.+..+.+  ..|||||||++||.|||++|+.|++++ .||
T Consensus       451 YGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDG  527 (691)
T KOG1256|consen  451 YGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDG  527 (691)
T ss_pred             ccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhcccc
Confidence            999999977776666555 6699999999999999999999887776  589999999999999999999999999 999


Q ss_pred             cccCCCCC
Q 010774          494 WFHTEVHR  501 (501)
Q Consensus       494 w~~TGD~~  501 (501)
                      |+||||.+
T Consensus       528 WLhTGDiG  535 (691)
T KOG1256|consen  528 WLHTGDIG  535 (691)
T ss_pred             ccccccce
Confidence            99999975

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.7e-67  Score=558.85  Aligned_cols=499  Identities=78%  Similarity=1.301  Sum_probs=406.4

Q ss_pred             CCccceeeecCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeH
Q 010774            1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTY   80 (501)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty   80 (501)
                      |-+.||+.+++.++.+..+|.++++||+...++.+...+....|+.+.|.+.++++|+++|+.+....++..+.++.+||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty   80 (660)
T PLN02861          1 MAETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTY   80 (660)
T ss_pred             CCccceeeeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEH
Confidence            88999999999999877899999999999888877766777889999999999999999999763111223345578999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh
Q 010774           81 QEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI  160 (501)
Q Consensus        81 ~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~  160 (501)
                      +||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|++.+..
T Consensus        81 ~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~  160 (660)
T PLN02861         81 KEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI  160 (660)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987665


Q ss_pred             hhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010774          161 PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL  240 (501)
Q Consensus       161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~  240 (501)
                      ..+..........++.++.++..................+++++..............++++++|+|||||||.||||++
T Consensus       161 ~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~l  240 (660)
T PLN02861        161 SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVIL  240 (660)
T ss_pred             HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEE
Confidence            54433332222246667776543221111111123345678877754422222234467999999999999999999999


Q ss_pred             ecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecCCHHHHHHHHhhhcCcEEEecc
Q 010774          241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVP  320 (501)
Q Consensus       241 sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P  320 (501)
                      ||.+++..+......+.........+|++++.+|++|++++...+.+++.|+++++.++++..+++.|++++||+++++|
T Consensus       241 th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP  320 (660)
T PLN02861        241 TNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVP  320 (660)
T ss_pred             ecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeech
Confidence            99999988776544331111124678999999999999998876678999999999878999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHH
Q 010774          321 RVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE  400 (501)
Q Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~  400 (501)
                      ++++.+.+.........+...+.+++++..++...++.+.......+..+++++++++..+|+++|.+++||+++++++.
T Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~  400 (660)
T PLN02861        321 RVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE  400 (660)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH
Confidence            99999999888888889999999999999999988877655555567788999999999999999999999999999975


Q ss_pred             HHHHHhhCC-CeeeeecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccc
Q 010774          401 EFLRVTSGA-PLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY  479 (501)
Q Consensus       401 ~~~~~~~~~-~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY  479 (501)
                      + |.+.++. .+++.||+||+++.++....+.....+++|+|+|+++++|+|.++........++.|||+|+||+++.||
T Consensus       401 ~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY  479 (660)
T PLN02861        401 E-FLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGY  479 (660)
T ss_pred             H-HHHHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccc
Confidence            5 5555664 7999999999987766544433334689999999999999984332211222336899999999999999


Q ss_pred             cCCcccchhhhccCcccCCCC
Q 010774          480 YKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       480 ~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      |++|+.|++.|.||||+|||.
T Consensus       480 ~~~pe~T~~~f~dGw~~TGDl  500 (660)
T PLN02861        480 HKRQDLTEEVLIDGWFHTGDI  500 (660)
T ss_pred             cCCHHHHHhhhhccCcccCce
Confidence            999999999999999999995

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=3.6e-65  Score=540.70  Aligned_cols=493  Identities=55%  Similarity=0.982  Sum_probs=387.0

Q ss_pred             eeeecCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHH
Q 010774            6 TVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYD   85 (501)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~   85 (501)
                      +++..+.  .++..|.+++++|+......+........|+.++|+++++.+|+++|+.+....++..+.++.+||+||.+
T Consensus        10 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~   87 (666)
T PLN02614         10 QVEEGKE--GSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYD   87 (666)
T ss_pred             Eeccccc--CCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHH
Confidence            3444443  34567888999999877766654345667999999999999999999986410012223445789999999


Q ss_pred             HHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhh
Q 010774           86 AAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS  165 (501)
Q Consensus        86 ~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~  165 (501)
                      +++++|++|.++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|++.+....+..
T Consensus        88 ~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~  167 (666)
T PLN02614         88 IVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFK  167 (666)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998765544433


Q ss_pred             cCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHH
Q 010774          166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA  244 (501)
Q Consensus       166 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~  244 (501)
                      ........++.++.++.............+.....+++++.... .........++++++|+|||||||.||||++||++
T Consensus       168 ~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~n  247 (666)
T PLN02614        168 TCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNES  247 (666)
T ss_pred             hcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHH
Confidence            33222223556666654321111111112334567887765431 11122334578999999999999999999999999


Q ss_pred             HHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecCCHHHHHHHHhhhcCcEEEecchHHH
Q 010774          245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYD  324 (501)
Q Consensus       245 l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~  324 (501)
                      ++..+......+......+..+|++++.+|++|+++....+.+++.|+++++.++++..+++.+++++||+++++|++++
T Consensus       248 l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~  327 (666)
T PLN02614        248 IVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLD  327 (666)
T ss_pred             HHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHH
Confidence            99887664433211112467889999999999999987666778999999998889999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHH
Q 010774          325 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR  404 (501)
Q Consensus       325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~  404 (501)
                      .+.+.+.......+...+.++.++..+++..+.++.......+..+++.+++++..++++||.+++||+++++.+ ++|.
T Consensus       328 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~  406 (666)
T PLN02614        328 RVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFL  406 (666)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHH
Confidence            999888877777888888999999998888877765555556777888899999999999999999999999876 5555


Q ss_pred             Hhh-CCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCc
Q 010774          405 VTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP  483 (501)
Q Consensus       405 ~~~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~  483 (501)
                      +.+ ++.+++.||+||++++++.........++++|+|+||++++|+|++++...+...++.|||+|+||++|.|||++|
T Consensus       407 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~p  486 (666)
T PLN02614        407 RVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKRE  486 (666)
T ss_pred             HHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCH
Confidence            555 5899999999999876555444333346899999999999999854442222334489999999999999999999


Q ss_pred             ccchhhhccCcccCCCCC
Q 010774          484 DLTEEVIVDGWFHTEVHR  501 (501)
Q Consensus       484 ~~~~~~~~dgw~~TGD~~  501 (501)
                      +.|++.|.||||+|||.+
T Consensus       487 e~T~~~f~dGw~~TGDlg  504 (666)
T PLN02614        487 DLTKEVLIDGWLHTGDVG  504 (666)
T ss_pred             HHhhhhhccCCcccceEE
Confidence            999999999999999963

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=4.3e-63  Score=524.29  Aligned_cols=496  Identities=48%  Similarity=0.883  Sum_probs=395.7

Q ss_pred             ceeeecCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHH
Q 010774            5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVY   84 (501)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~   84 (501)
                      |++++...-....++|.++++||+...++.+...+....|+.+.|.+.++.+|+++|+.+.+..++..+.++.+||+|+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~   83 (660)
T PLN02430          4 FAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVY   83 (660)
T ss_pred             eeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHH
Confidence            45566533333357889999999988776665555688999999999999999999997641112333455678999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhh
Q 010774           85 DAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL  164 (501)
Q Consensus        85 ~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~  164 (501)
                      ++++++|.+|.++|+++||+|+|+++|++||++++|||+++|++++|+++.++++++.++++.++++++|++........
T Consensus        84 ~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~  163 (660)
T PLN02430         84 EEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELL  163 (660)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999875433322


Q ss_pred             hcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecH
Q 010774          165 SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ  243 (501)
Q Consensus       165 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~  243 (501)
                      .........++.++.++.............+.....+++++.... ......+..++++++|+|||||||.||||++||+
T Consensus       164 ~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~  243 (660)
T PLN02430        164 EPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHE  243 (660)
T ss_pred             hhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecH
Confidence            222222235667777754332111111112334567888775442 1222233467899999999999999999999999


Q ss_pred             HHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecCCHHHHHHHHhhhcCcEEEecchHH
Q 010774          244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVY  323 (501)
Q Consensus       244 ~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~  323 (501)
                      +++..+..+..........+..+|++++.+|++|+++....+.++..|+++++...++..+++.+++++||++.++|.++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~  323 (660)
T PLN02430        244 AVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVF  323 (660)
T ss_pred             HHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHH
Confidence            99988766432211111145788999999999999998877778999999998877889999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHH
Q 010774          324 DRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL  403 (501)
Q Consensus       324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~  403 (501)
                      +.+.+.............+.+++++...+...++.+.......+..+.+.+++++..+|+++|.+++||+++++++.+.+
T Consensus       324 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~  403 (660)
T PLN02430        324 ERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL  403 (660)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH
Confidence            99999888888888888999999999999999887765444566778888999999999999999999999999987766


Q ss_pred             HHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCc
Q 010774          404 RVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP  483 (501)
Q Consensus       404 ~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~  483 (501)
                      +...++.+++.||+||++++++.........++++|+|.|+++++|+|+++....+.+.++.|||+|+|++++.|||++|
T Consensus       404 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~  483 (660)
T PLN02430        404 RVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNP  483 (660)
T ss_pred             HHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCCh
Confidence            65434689999999999887766554444456999999999999998855544344444468999999999999999999


Q ss_pred             ccchhhhccCcccCCCC
Q 010774          484 DLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       484 ~~~~~~~~dgw~~TGD~  500 (501)
                      +.|++.|.||||+|||.
T Consensus       484 e~t~~~~~dGw~~TGDi  500 (660)
T PLN02430        484 ELTEEVMKDGWFHTGDI  500 (660)
T ss_pred             HHhhhhhhccceeccce
Confidence            99999999999999995

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=5.2e-63  Score=525.38  Aligned_cols=484  Identities=38%  Similarity=0.650  Sum_probs=392.0

Q ss_pred             ccceeeecCCCCCCCCCCCCCCcccccccCCCCCCC---CCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEee
Q 010774            3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLES---PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLT   79 (501)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~T   79 (501)
                      +.|++++++....     +.+.+||+...+..+...   +....++.++|+++++.+|+++|+.+.-..++..+.++.+|
T Consensus         6 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lT   80 (651)
T PLN02736          6 QGYSVVLPEKLQT-----GKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMT   80 (651)
T ss_pred             cCcceeCCCCCCC-----CCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEE
Confidence            5688887755544     899999987666444432   35667999999999999999999964200023334567899


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCC
Q 010774           80 YQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK  159 (501)
Q Consensus        80 y~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~  159 (501)
                      |+||.++++++|++|+++|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++.++|+.++++++|++.+.
T Consensus        81 y~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~  160 (651)
T PLN02736         81 YGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQT  160 (651)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             hhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceE
Q 010774          160 IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGV  238 (501)
Q Consensus       160 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v  238 (501)
                      .+.+..... ....++.++.++...................+++++.... .........++++++|+|||||||.||||
T Consensus       161 ~~~~~~~~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV  239 (651)
T PLN02736        161 LNTLLSCLS-EIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGV  239 (651)
T ss_pred             HHHHHHHhh-cCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEE
Confidence            655544333 2345566666643221111111112334667888776542 12223344678999999999999999999


Q ss_pred             EeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecCCHHHHHHHHhhhcCcEEEe
Q 010774          239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSG  318 (501)
Q Consensus       239 ~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~  318 (501)
                      ++||++++..+..+...+     .+..+|++++.+|++|.+++..++.+++.|+++++.+.++..+++.++++++|++++
T Consensus       240 ~lsh~~l~~~~~~~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~  314 (651)
T PLN02736        240 VLTHGNLIANVAGSSLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCS  314 (651)
T ss_pred             EEecHHHHHHHHHHHhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEec
Confidence            999999999888776655     677899999999999999998888899999999998889999999999999999999


Q ss_pred             cchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHH
Q 010774          319 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH  398 (501)
Q Consensus       319 ~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~  398 (501)
                      +|++++.+.+.+.......+.+.+.+++++...+...+..+..   ..+.++++.+++++..+++++|.+++||++++++
T Consensus       315 vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~  391 (651)
T PLN02736        315 VPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKN---PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPD  391 (651)
T ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCC---CCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHH
Confidence            9999999999998889999999999999998888766665432   2245678888999999989999999999999999


Q ss_pred             HHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccC-CCCCCCceEEEecCCccc
Q 010774          399 VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDA-LSSVPRGEICLRGNTLFS  477 (501)
Q Consensus       399 ~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~-~~~~~~Gei~v~g~~v~~  477 (501)
                      +.+++++.+|+.+++.||+||++++++...... ..++++|+|+||++++|+|.+++.... ...++.|||+|+||++|.
T Consensus       392 ~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~  470 (651)
T PLN02736        392 VMEFLRICFGGRVLEGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFK  470 (651)
T ss_pred             HHHHHHHHhCCCeEEEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCcccc
Confidence            999999888999999999999987766544333 345899999999999999833322111 112257999999999999


Q ss_pred             cccCCcccchhhh-ccCcccCCCCC
Q 010774          478 GYYKRPDLTEEVI-VDGWFHTEVHR  501 (501)
Q Consensus       478 gY~~~~~~~~~~~-~dgw~~TGD~~  501 (501)
                      |||++++.|++.| .||||+|||.+
T Consensus       471 GY~~~~~~t~~~~~~dgw~~TGDlg  495 (651)
T PLN02736        471 GYYKDEVQTREVIDEDGWLHTGDIG  495 (651)
T ss_pred             ccccCHHHHHhhhccCCCeeccceE
Confidence            9999999999998 69999999963

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-62  Score=521.02  Aligned_cols=475  Identities=24%  Similarity=0.421  Sum_probs=376.5

Q ss_pred             cceeeecCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHH
Q 010774            4 TYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEV   83 (501)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el   83 (501)
                      .|+..++.....     +++++||....+...+  .....|+.++|.++++++|+++|+++.   + .+..++.+||+||
T Consensus        29 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el   97 (746)
T PTZ00342         29 GYSEICEKATNE-----NESSVYCMKDHKKKSS--LYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNF   97 (746)
T ss_pred             eeeeEecCCCCC-----CCCCceecCchhhccc--ccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHH
Confidence            355555555544     7888999777666622  255789999999999999999999863   2 1223578999999


Q ss_pred             HHHHHHHHHHHHh---CCCCCC-----------CEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcC
Q 010774           84 YDAAIRFGSAMRS---RGVNPG-----------DRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAE  149 (501)
Q Consensus        84 ~~~v~~~A~~L~~---~gv~~g-----------d~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~  149 (501)
                      .++++++|++|.+   +|+++|           |+|+|+++|+++|+++.+||+++|++++|+++.++.+++.++|+.++
T Consensus        98 ~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~  177 (746)
T PTZ00342         98 FKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETK  177 (746)
T ss_pred             HHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCC
Confidence            9999999999997   499999           99999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChh-------------------------------------------
Q 010774          150 VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS-------------------------------------------  186 (501)
Q Consensus       150 ~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------------------------------  186 (501)
                      ++++|++.+..+.+..... .++.++.++.++.....                                           
T Consensus       178 ~~~lv~~~~~~~~l~~~~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (746)
T PTZ00342        178 LEWLCLDLDLVEGLLERKN-ELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLG  256 (746)
T ss_pred             CCEEEEcHHHHHHHHHhhc-cCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999998776666544332 34567778777642110                                           


Q ss_pred             --------------hHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhc
Q 010774          187 --------------QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV  252 (501)
Q Consensus       187 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~  252 (501)
                                    ........+.....++++..............++++++|+|||||||.||||++||+++++.+...
T Consensus       257 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~  336 (746)
T PTZ00342        257 PLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPL  336 (746)
T ss_pred             ccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHH
Confidence                          000001112233445555433322222334567999999999999999999999999999988764


Q ss_pred             ceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecCCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHH
Q 010774          253 DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  332 (501)
Q Consensus       253 ~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  332 (501)
                      ....   .......|++++.+|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.+++++.+....
T Consensus       337 ~~~~---~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~  413 (746)
T PTZ00342        337 CKHS---IFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMT  413 (746)
T ss_pred             hhcc---cccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHH
Confidence            3221   0012345899999999999999888889999999999877999999999999999999999999999998888


Q ss_pred             HhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHH--HHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCC
Q 010774          333 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL--VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP  410 (501)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~  410 (501)
                      .....+...+.+++++...+.......     ..+..+.+  .++++++.++++||.+++||+++++++.++|+..+|+.
T Consensus       414 ~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~  488 (746)
T PTZ00342        414 EINNLPPLKRFLVKKILSLRKSNNNGG-----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVN  488 (746)
T ss_pred             HHhhcCHHHHHHHHHHHHHHHHhhcCC-----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCC
Confidence            888888888999999998887754321     12333333  57889999999999999999999999999999988999


Q ss_pred             eeeeecccccCcceecccCCCCcccCcccccc-cCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhh
Q 010774          411 LTQGYGLTESCSGCFTSLADVFNMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV  489 (501)
Q Consensus       411 l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~-p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~  489 (501)
                      ++++||+||++++++...... ..++++|+|+ |+++++|+|+++.....  ..+.|||+++||++|.|||++|+.|++.
T Consensus       489 i~~gYGlTEt~~~~~~~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~~~~--~~~~GEl~vrGp~v~~GY~~~pe~T~~~  565 (746)
T PTZ00342        489 YYQGYGLTETTGPIFVQHADD-NNTESIGGPISPNTKYKVRTWETYKATD--TLPKGELLIKSDSIFSGYFLEKEQTKNA  565 (746)
T ss_pred             EEEeeccCcccceeeeccCCC-CCcccccCcCCCcEEEEEecccccccCC--CCCceEEEEecCcccccccCChhhhhhh
Confidence            999999999987766554433 4559999998 99999999844433222  2257999999999999999999999999


Q ss_pred             h-ccCcccCCCCC
Q 010774          490 I-VDGWFHTEVHR  501 (501)
Q Consensus       490 ~-~dgw~~TGD~~  501 (501)
                      | .||||+|||.+
T Consensus       566 f~~dGW~~TGDig  578 (746)
T PTZ00342        566 FTEDGYFKTGDIV  578 (746)
T ss_pred             cCcCCcccCCcEE
Confidence            9 69999999963

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=4e-63  Score=499.74  Aligned_cols=433  Identities=32%  Similarity=0.582  Sum_probs=351.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ...++...+.++++.+|+.+++...   .  .+.++.+||+|+.+++.++|++|++.|+..||+|+|++.|+++|+++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~a~~~~---~--~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~   88 (613)
T COG1022          14 EIHTLPKRLAERVKDRPDGVALMYK---E--LGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADL   88 (613)
T ss_pred             hcccHHHHHHHHhhcCCcceeEeee---c--CCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4478999999999999998888865   3  5677899999999999999999999999779999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecC----CChhhHHHhhh-cC
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN----VSSSQKKEAEE-LG  195 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~-~~  195 (501)
                      ||+.+|++.+|+.+..+++++.++|+.+++++||++..............+..+.......+    .........+. ..
T Consensus        89 a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (613)
T COG1022          89 AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPD  168 (613)
T ss_pred             HHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhcccccccc
Confidence            99999999999999999999999999999999999996554443433332221111111111    00000000000 00


Q ss_pred             ceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeecccc-CCCCcEEEEecC
Q 010774          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSFLP  274 (501)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~~~p  274 (501)
                      .....+  ............+..+++++.|+|||||||.||||++||+|+++++..+...+     . ...+|+.++++|
T Consensus       169 ~~~~~~--~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~LsfLP  241 (613)
T COG1022         169 EGISLF--LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSFLP  241 (613)
T ss_pred             ccchhh--hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEeCc
Confidence            011111  11111122223456789999999999999999999999999999999988776     5 789999999999


Q ss_pred             hHHHHHHHHHHHHHhcCcEEEEecCCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          275 LAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       275 l~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      +.|++..++.+.....++..++...++..++..++++|||+++++|.+|+.+.+...++....+...+++++|+.+.+..
T Consensus       242 laHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~  321 (613)
T COG1022         242 LAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYK  321 (613)
T ss_pred             HHHHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            99999998744433444444445569999999999999999999999999999999999999999999999999987654


Q ss_pred             h----hccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCC
Q 010774          355 N----MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD  430 (501)
Q Consensus       355 ~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~  430 (501)
                      .    +..+. +....-..+++.|+++++.+|+++|++++||+++++++...|+.. |+++.++||+||++++++..+++
T Consensus       322 ~~~~~~~~~~-~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~  399 (613)
T COG1022         322 KISRALLGGG-PLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPD  399 (613)
T ss_pred             HHHhhhcccC-CcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEcccc
Confidence            2    22221 222223378899999999999999999999999999999999987 89999999999999999988776


Q ss_pred             CCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCCC
Q 010774          431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVHR  501 (501)
Q Consensus       431 ~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~~  501 (501)
                      .... +++|+|+|+++++|+|             .|||+||||+||.|||++|+.|+++| .||||+|||.+
T Consensus       400 ~~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg  457 (613)
T COG1022         400 RFVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLG  457 (613)
T ss_pred             Cccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCcee
Confidence            6555 9999999999999998             49999999999999999999999999 69999999964

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-61  Score=459.26  Aligned_cols=487  Identities=35%  Similarity=0.611  Sum_probs=416.3

Q ss_pred             CCccceeeecCCCCCCCCCCCCCCcccccccCCCCCCCC-CCCCCHHHHHHHHHHhCCCCcceEEeecc--------CCC
Q 010774            1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESP-AGLESPWQFFCDSAKRIPNNQMLGGRKVS--------DGK   71 (501)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~tl~~~l~~~a~~~p~~~al~~~~~~--------~~~   71 (501)
                      |...|.|+..+.-.+     .|+.+||++...+++.+.+ ....|+.+++.+.+++++++.++-.+++.        |++
T Consensus         3 ~~~~~~V~~~~~~n~-----~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK   77 (678)
T KOG1180|consen    3 MEKKYRVKAKPAANE-----HETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGK   77 (678)
T ss_pred             cchhcccccCCCCCC-----CCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCe
Confidence            567788888877544     7899999998777666665 67889999999999999999998655321        221


Q ss_pred             ------CCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCE-EEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHH
Q 010774           72 ------VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFI  144 (501)
Q Consensus        72 ------~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~-V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~  144 (501)
                            -+++.++||.|+..++..+|++|.+.|++++++ ++|+++.+.+|+++++||++.+.+++-+..++..+.+.+-
T Consensus        78 ~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hs  157 (678)
T KOG1180|consen   78 TFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHS  157 (678)
T ss_pred             EEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhh
Confidence                  245678999999999999999999999997777 9999999999999999999999999999999999999999


Q ss_pred             HHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHh----hhcCceEeeHHHHHhcCC-CCCCCCCCCC
Q 010774          145 INHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA----EELGVSCFSWEEFLQLGT-LDCELPPKKK  219 (501)
Q Consensus       145 l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  219 (501)
                      |..++++.+|++.+.++.+..... ....++.+|.+++.+.......    ....+.+++++++.+.+. ...++.+..+
T Consensus       158 l~Et~~~~i~T~~~LL~kl~~~l~-~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p  236 (678)
T KOG1180|consen  158 LNETESTAIFTDSELLPKLKAPLK-QAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKP  236 (678)
T ss_pred             hccccceEEEeCHHHHHHHHHHHh-ccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCC
Confidence            999999999999999886655443 4478899999986443222221    123578999999998883 3233444478


Q ss_pred             CCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecC
Q 010774          220 TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG  299 (501)
Q Consensus       220 ~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~  299 (501)
                      +|+|+|+|||||||.||||+++|+|+++.+.......    ..+...|+++..+||.|++-+.+-+.+++.|+.+-..+.
T Consensus       237 ~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v----~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~  312 (678)
T KOG1180|consen  237 SDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENV----PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSP  312 (678)
T ss_pred             CceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccC----cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCc
Confidence            9999999999999999999999999999998865543    268899999999999999999999999999999976543


Q ss_pred             ------C---HHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHH
Q 010774          300 ------D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD  370 (501)
Q Consensus       300 ------~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (501)
                            +   -...-..+..+|||+|.++|++++++-+....++.+.+.+.+.+|..++.+|+..+++.   ....+.++
T Consensus       313 ~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~---g~~s~~ld  389 (678)
T KOG1180|consen  313 LTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERN---GPGSPLLD  389 (678)
T ss_pred             ceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhcc---CCchhhHH
Confidence                  1   12222346789999999999999999999999999999999999999999999998831   23478899


Q ss_pred             HHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEe
Q 010774          371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLE  450 (501)
Q Consensus       371 ~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~  450 (501)
                      .+.|+++|..+|++||++++||+|++++..+.+.-.+.+++.++||.||+|+..+...+++..- |.+|.|++.++++++
T Consensus       390 ~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLv  468 (678)
T KOG1180|consen  390 ALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLV  468 (678)
T ss_pred             HHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEE
Confidence            9999999999999999999999999999999999999999999999999999888776665544 899999999999999


Q ss_pred             ecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh--ccC--cccCCCCC
Q 010774          451 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDG--WFHTEVHR  501 (501)
Q Consensus       451 d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~dg--w~~TGD~~  501 (501)
                      |++|+...+.+..+.||||++|+++..||++|++.|++.|  +||  ||+|||-+
T Consensus       469 dw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIG  523 (678)
T KOG1180|consen  469 DWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIG  523 (678)
T ss_pred             EhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccc
Confidence            9999998887766789999999999999999999999999  499  99999964

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=8.6e-60  Score=502.02  Aligned_cols=475  Identities=33%  Similarity=0.551  Sum_probs=373.6

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeecc--------CC------CCCccEEeeHHHHHHH
Q 010774           21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS--------DG------KVGPYVWLTYQEVYDA   86 (501)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~--------~~------~~~~~~~~Ty~el~~~   86 (501)
                      .+..+||+...+...........|+.++|.++++.+|+++|+.+.+..        ++      ..+.++.+||+||.++
T Consensus        36 ~~~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~  115 (696)
T PLN02387         36 EPGYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFER  115 (696)
T ss_pred             CCCCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHH
Confidence            344469988865333322356689999999999999999999543100        11      1145567999999999


Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhc
Q 010774           87 AIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC  166 (501)
Q Consensus        87 v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~  166 (501)
                      ++++|++|.++|+++||+|+|+++|++||++++|||+++|++++|+++.++.+++.++|+.++++++|++.+....+...
T Consensus       116 v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~  195 (696)
T PLN02387        116 VCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDI  195 (696)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987766665443


Q ss_pred             CccCCCCccEEEEecCCChhhHHH-hhhcCceEeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHH
Q 010774          167 LPRCCLYLKTIVSFANVSSSQKKE-AEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA  244 (501)
Q Consensus       167 ~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~  244 (501)
                      .. ....++.++.+++........ .......+..++++..... .........++++++|+|||||||.||||++||++
T Consensus       196 ~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~  274 (696)
T PLN02387        196 SS-QLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGN  274 (696)
T ss_pred             hh-ccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHH
Confidence            32 335677788776543211100 0112345667888775542 12222334679999999999999999999999999


Q ss_pred             HHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecC----C-----HHHHHHHHhhhcCcE
Q 010774          245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----D-----VRYLMEDIQELKPTM  315 (501)
Q Consensus       245 l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~----~-----~~~~~~~i~~~~~t~  315 (501)
                      ++..+..+...+    ..+..+|++++.+|++|++++...+.++..|+++.+...    +     +..++..++++++|+
T Consensus       275 l~~~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~  350 (696)
T PLN02387        275 IVATVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTL  350 (696)
T ss_pred             HHHHHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcE
Confidence            998887754432    146788999999999999999876667888888765322    1     234567899999999


Q ss_pred             EEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCC--CCCcchhHHHHHHHHHHHHhCCceeEEEEecC
Q 010774          316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP--QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA  393 (501)
Q Consensus       316 ~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~  393 (501)
                      ++++|.+++++.+.........+.+.+.+++++...++..+...+.  .......++.+.+++++..+|+++|.+++||+
T Consensus       351 ~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGa  430 (696)
T PLN02387        351 MTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGA  430 (696)
T ss_pred             EEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCC
Confidence            9999999999999888888888889999999999888776643211  12345677889999999999999999999999


Q ss_pred             CCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCC-CCCCCceEEEec
Q 010774          394 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDAL-SSVPRGEICLRG  472 (501)
Q Consensus       394 ~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~-~~~~~Gei~v~g  472 (501)
                      ++++++.+.++..+|+.++++||+||++++++....+. ...+++|+|+|+++++|+|+++++.... ..++.|||+|+|
T Consensus       431 pl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~-~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrG  509 (696)
T PLN02387        431 PLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDD-TSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGG  509 (696)
T ss_pred             CCCHHHHHHHHHHcCCCeeEeechhhcccceeecCccc-CCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEecc
Confidence            99999988888778999999999999988776654433 3458999999999999999555543322 223579999999


Q ss_pred             CCccccccCCcccchhhh---ccC--cccCCCCC
Q 010774          473 NTLFSGYYKRPDLTEEVI---VDG--WFHTEVHR  501 (501)
Q Consensus       473 ~~v~~gY~~~~~~~~~~~---~dg--w~~TGD~~  501 (501)
                      |++|.|||++|+.|++.|   .||  ||+|||.+
T Consensus       510 p~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig  543 (696)
T PLN02387        510 PSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIG  543 (696)
T ss_pred             CcccchhcCCHHHHhhhhccccCCCceeecCceE
Confidence            999999999999999988   245  99999953

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.7e-59  Score=495.93  Aligned_cols=481  Identities=30%  Similarity=0.503  Sum_probs=372.2

Q ss_pred             ccceeeecCCCCCCCCCCCCCCcccccccCC----CCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeecc----------
Q 010774            3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKD----GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS----------   68 (501)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~----------   68 (501)
                      +.|+++++     .+.++..++++|.....+    .+....+...|+.++|.++++.+|+++|+.+.+..          
T Consensus        30 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~  104 (700)
T PTZ00216         30 GPQNVPVP-----GTETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDA  104 (700)
T ss_pred             CCcceecC-----CCCCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccC
Confidence            34556654     234456677888765443    22222245679999999999999999999885100          


Q ss_pred             CCC--------CCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHH
Q 010774           69 DGK--------VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANA  140 (501)
Q Consensus        69 ~~~--------~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~  140 (501)
                      ++.        .+..+.+||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|++++|+++.++.++
T Consensus       105 ~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~  184 (700)
T PTZ00216        105 DGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDA  184 (700)
T ss_pred             CCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHH
Confidence            010        024579999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCC---CC-CCCCC
Q 010774          141 VEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT---LD-CELPP  216 (501)
Q Consensus       141 l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~  216 (501)
                      +.++|+.++++++|++......+.............++.++.....    .........++++++....   .. ....+
T Consensus       185 l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (700)
T PTZ00216        185 LAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIP  260 (700)
T ss_pred             HHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCC
Confidence            9999999999999998765544433332211112245555432211    1112345677888876541   11 11233


Q ss_pred             CCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEE
Q 010774          217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF  296 (501)
Q Consensus       217 ~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~  296 (501)
                      ..++++++|+|||||||.||||++||+++++.+..+...+.........+|++++.+|++|++++......++.|+++.+
T Consensus       261 ~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~  340 (700)
T PTZ00216        261 ENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF  340 (700)
T ss_pred             CCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEE
Confidence            46789999999999999999999999999988876544321111123678999999999999998776667888888766


Q ss_pred             ecCCHHHHHH-------HHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhH
Q 010774          297 WRGDVRYLME-------DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL  369 (501)
Q Consensus       297 ~~~~~~~~~~-------~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (501)
                      .  ++..+.+       .++++++|++.++|.+++.+.+.........+.+.+.+++++...++..+..+.    ..+..
T Consensus       341 ~--~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~  414 (700)
T PTZ00216        341 G--SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYW  414 (700)
T ss_pred             C--CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchH
Confidence            3  4555554       688999999999999999999998888888888999999999988887776542    24567


Q ss_pred             HHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEE
Q 010774          370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL  449 (501)
Q Consensus       370 ~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I  449 (501)
                      +.+.+++++..+++++|.+++||+++++++.++++..++ .+++.||+||++++++...... ...+++|+|+||++++|
T Consensus       415 ~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~-~~~~svG~p~~g~evkI  492 (700)
T PTZ00216        415 NEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGD-LEPNAVGQLLKGVEMKL  492 (700)
T ss_pred             HHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCC-CCCCCcCCcCCCeEEEE
Confidence            888899999999999999999999999999988888778 9999999999987766554432 34589999999999999


Q ss_pred             eecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCCC
Q 010774          450 ESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVHR  501 (501)
Q Consensus       450 ~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~~  501 (501)
                      +| +++.......++.|||+|+|++++.|||++|+.|++.| .||||+|||.+
T Consensus       493 ~d-~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig  544 (700)
T PTZ00216        493 LD-TEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVG  544 (700)
T ss_pred             ee-chhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceE
Confidence            99 55432222233689999999999999999999999999 79999999953

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=3.1e-58  Score=430.10  Aligned_cols=401  Identities=22%  Similarity=0.323  Sum_probs=341.3

Q ss_pred             cCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Q 010774           31 AKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS  110 (501)
Q Consensus        31 ~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~  110 (501)
                      .-++-...|-...|+.+.++-.+++.||+.|+++.   ..+    .+.||+|+...++.+|++|.++|+++||||++..|
T Consensus        38 ~~~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~---~eg----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgp  110 (596)
T KOG1177|consen   38 YVHGCSQIPLDSETIGQLLETTTERVPDKEAAVFD---HEG----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGP  110 (596)
T ss_pred             ccCCCCCCCcccccHHHHHHHHhhccCcceEEEEe---ecc----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecC
Confidence            44566667788899999999999999999999986   222    46999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhh-----hhh------------cCccCCCC
Q 010774          111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS-----ILS------------CLPRCCLY  173 (501)
Q Consensus       111 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~-----~~~------------~~~~~~~~  173 (501)
                      |+.+|+..+|||+++|.+.+++||++..+++++.|++.+++++|+.......     +.+            ...+.++.
T Consensus       111 N~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~  190 (596)
T KOG1177|consen  111 NSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPE  190 (596)
T ss_pred             ChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccccccc
Confidence            9999999999999999999999999999999999999999999998743221     211            12234455


Q ss_pred             ccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCCCC------CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHH
Q 010774          174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA  247 (501)
Q Consensus       174 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~  247 (501)
                      +..++..++...         -.+...+.|++.....+      .......+|+++.|.|||||||.|||+.+||.++++
T Consensus       191 lthvi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~N  261 (596)
T KOG1177|consen  191 LTHVILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLN  261 (596)
T ss_pred             ceEEEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhh
Confidence            666666663322         12356677777655221      112334679999999999999999999999999999


Q ss_pred             HHhhcceeeeeccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHH
Q 010774          248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYD  324 (501)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~  324 (501)
                      +.......+     ++..++++++..|++|.+|... ++++|..|++++++..  ++.+.+++|.++|||.++.+|+++.
T Consensus       262 na~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~  336 (596)
T KOG1177|consen  262 NARAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFV  336 (596)
T ss_pred             hHHHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHH
Confidence            999988777     8888999999999999999765 8999999999999764  9999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHH
Q 010774          325 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR  404 (501)
Q Consensus       325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~  404 (501)
                      .+++                                     .+....++++        ++|..+.||+++++++++.+.
T Consensus       337 Dlln-------------------------------------~~~~~~~~~s--------~lr~~vigGa~~s~eLlk~iv  371 (596)
T KOG1177|consen  337 DLLN-------------------------------------IPQKQQVDLS--------SLRKGVIGGAPVSPELLKLIV  371 (596)
T ss_pred             HHhc-------------------------------------chhhccCchh--------hhhhheeCCCCCCHHHHHHHH
Confidence            9986                                     4555566666        889999999999999999999


Q ss_pred             HhhCCC-eeeeecccccCcceecccCCC--CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccC
Q 010774          405 VTSGAP-LTQGYGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK  481 (501)
Q Consensus       405 ~~~~~~-l~~~yG~tE~~~~~~~~~~~~--~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~  481 (501)
                      +..++. +..+||+||++.+.+....++  .+...|+|..+++.+..|+| .+|...|.+  ..||||+||.+++.|||+
T Consensus       372 ~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg  448 (596)
T KOG1177|consen  372 NQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWG  448 (596)
T ss_pred             HhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecC
Confidence            977764 778999999999888776665  34568999999999999999 999988888  679999999999999999


Q ss_pred             Ccccchhhh-ccCcccCCCC
Q 010774          482 RPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       482 ~~~~~~~~~-~dgw~~TGD~  500 (501)
                      +++.|.++. .|.||+|||-
T Consensus       449 ~~~kT~eti~~drW~~TGDi  468 (596)
T KOG1177|consen  449 EEEKTKETIGNDRWYDTGDI  468 (596)
T ss_pred             CcccchhhcccccceecCce
Confidence            999999988 8899999995

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-57  Score=455.67  Aligned_cols=390  Identities=28%  Similarity=0.406  Sum_probs=315.5

Q ss_pred             HHHHHHHHhCCCC-cceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEcCCchhHHHHHHHHH
Q 010774           47 QFFCDSAKRIPNN-QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRG--VNPGDRCGIYGSNCPEWIIAMEACN  123 (501)
Q Consensus        47 ~~l~~~a~~~p~~-~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~g--v~~gd~V~i~~~n~~~~~~~~lA~~  123 (501)
                      -.+.+.+..++++ +.+++.   +.. +  +.+||+|++.++.++|..|.++|  +++||+|++++||+++++.+++||+
T Consensus        20 ~~l~~~~~~~~~~~~~~i~~---~~~-g--~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~   93 (537)
T KOG1176|consen   20 TFLGRPAFVYLDRNTSLVYQ---DSD-G--RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVP   93 (537)
T ss_pred             ccccccccccccCcceEEEe---cCC-C--cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            3344444455555 777766   321 1  58999999999999999999875  8999999999999999999999999


Q ss_pred             hcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHH
Q 010774          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (501)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (501)
                      .+|+++.++||.+.+.++...++.++++++|++....+.+.+......   ..++.+.........  .........+..
T Consensus        94 ~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~~~--~~~~~~~~~~~~  168 (537)
T KOG1176|consen   94 MAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGVISI--SDLVEDLDAFED  168 (537)
T ss_pred             HcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCcccc--ccccccccchhh
Confidence            999999999999999999999999999999999999988866554332   344444332110000  000000111444


Q ss_pred             HHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHH
Q 010774          204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII  283 (501)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  283 (501)
                      +........ ..+.+.++++.+.|||||||.||||++||++++..........     .+...|+.++.+|++|.+|+..
T Consensus       169 ~~~~~~~~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~Gl~~  242 (537)
T KOG1176|consen  169 LMPEGLPDG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIYGLIT  242 (537)
T ss_pred             ccccCCCcc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHhHHHH
Confidence            433332222 4556779999999999999999999999999999987755544     6667999999999999999998


Q ss_pred             HHH-HHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCC
Q 010774          284 ETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP  361 (501)
Q Consensus       284 ~~~-~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (501)
                      ++. .+..|.++++.+. ++..+++.+++|++|+++++|.++..+++                                 
T Consensus       243 ~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~---------------------------------  289 (537)
T KOG1176|consen  243 LLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAK---------------------------------  289 (537)
T ss_pred             HHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhc---------------------------------
Confidence            666 5666666666665 99999999999999999999999999986                                 


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC-CCeeeeecccccCcceecccCCCCcccCcccc
Q 010774          362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADVFNMIGTVGV  440 (501)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~-~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~  440 (501)
                          .+...+++++        ++|.+.+||++++++..++++++++ ..+.++||+||++++++........+++|+|+
T Consensus       290 ----~p~~~~~~l~--------sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~  357 (537)
T KOG1176|consen  290 ----SPIVKKYDLS--------SLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGR  357 (537)
T ss_pred             ----CCccCcccCC--------ccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCc
Confidence                4455666665        9999999999999999999999998 88999999999998777766555467799999


Q ss_pred             cccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhcc-CcccCCCCC
Q 010774          441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD-GWFHTEVHR  501 (501)
Q Consensus       441 p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~d-gw~~TGD~~  501 (501)
                      ++++++++|.+ ++|..++.+  +.||||+||++++.|||+||+.|++.|.+ |||||||.+
T Consensus       358 ~~~g~~~~v~~-e~g~~l~~~--~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiG  416 (537)
T KOG1176|consen  358 LLPGVRVKVLD-ETGVSLGPN--QTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLG  416 (537)
T ss_pred             cccceEEEeeC-CCCCCCCCC--CceEEEEECcccchhhcCChHHHHhhcccCCccccCceE
Confidence            99999999999 888877776  89999999999999999999999999954 999999953

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.6e-56  Score=460.85  Aligned_cols=391  Identities=28%  Similarity=0.420  Sum_probs=318.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....++.+.|.++++.+|+++|+++.   +.. +   ++||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus         8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~-~---~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~   80 (534)
T COG0318           8 TAELTLASLLERAARRNPDRPALIFL---GRG-G---RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF   80 (534)
T ss_pred             cccccHHHHHHHHHHhCCCceEEEEc---CCC-c---eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            45578999999999999999999987   432 1   5999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      |||+++|++++|+||.+..+++.++++.++++.++++.+..+......... .....+..........         . .
T Consensus        81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~-~  149 (534)
T COG0318          81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEAL-PVVLVVLLVGDADDRL---------P-I  149 (534)
T ss_pred             HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccC-CcceEEEecccccccc---------c-c
Confidence            999999999999999999999999999999999999988444333322221 2222222222211100         0 2


Q ss_pred             eHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeecccc--CCCCcEEEEecChH
Q 010774          200 SWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV--CSEEDTYFSFLPLA  276 (501)
Q Consensus       200 ~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~--~~~~d~~l~~~pl~  276 (501)
                      .++++.... .........+++++++++|||||||.||||++||++++.+...+...+     .  +...|++++.+|++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl~  224 (534)
T COG0318         150 TLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPLF  224 (534)
T ss_pred             cHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecChH
Confidence            344443322 111222225789999999999999999999999999999988876666     5  78999999999999


Q ss_pred             HHHHHHH-HHHHHhcCcEEEEec---CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 010774          277 HIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (501)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (501)
                      |.+|+.. ++.+++.|+++++.+   +++..++..+.++++|+++++|+++..++++.                      
T Consensus       225 H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~----------------------  282 (534)
T COG0318         225 HIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNP----------------------  282 (534)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCC----------------------
Confidence            9999997 555699999999987   49999999999999999999999999987632                      


Q ss_pred             hhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC-CCeeeeecccccCcceecccCCC
Q 010774          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADV  431 (501)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~-~~l~~~yG~tE~~~~~~~~~~~~  431 (501)
                                     .....+++       +++|.++.||+++++++.++|++.|+ ..+++.||+||++.+++....+.
T Consensus       283 ---------------~~~~~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~  340 (534)
T COG0318         283 ---------------EKDDDDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD  340 (534)
T ss_pred             ---------------ccCccccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCch
Confidence                           12222221       13999999999999999999999997 47999999999998877776665


Q ss_pred             -CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhcc-CcccCCCC
Q 010774          432 -FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD-GWFHTEVH  500 (501)
Q Consensus       432 -~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~d-gw~~TGD~  500 (501)
                       ....+++|+|+||++++|+| +++....+  +++|||||+||+++.|||++|+.|++.|.+ |||+|||-
T Consensus       341 ~~~~~~~~G~~~pg~~v~Ivd-~~~~~~~p--g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDl  408 (534)
T COG0318         341 LLAKPGSVGRPLPGVEVRIVD-PDGGEVLP--GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDL  408 (534)
T ss_pred             hhhcCCcccccCCCcEEEEEe-CCCCccCC--CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecce
Confidence             33568889999999999999 77753333  489999999999999999999999998865 99999995

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=8e-56  Score=441.02  Aligned_cols=378  Identities=21%  Similarity=0.246  Sum_probs=314.2

Q ss_pred             HHHHHHHh-CCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHHHHHHHhc
Q 010774           48 FFCDSAKR-IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQ  125 (501)
Q Consensus        48 ~l~~~a~~-~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~~  125 (501)
                      .++++... .+++.|+++.   +..++. +.+||+||++.++++|+.|++ .|+ +||||++++|+.+|.++++|||+++
T Consensus        14 ~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~ri   88 (528)
T COG0365          14 ALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARI   88 (528)
T ss_pred             hhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            47777763 5789999997   444334 899999999999999999987 578 9999999999999999999999999


Q ss_pred             CCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccC--CCCccEEEEecCCChhhHHHhhhcCceEeeHHH
Q 010774          126 AITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC--CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (501)
Q Consensus       126 G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (501)
                      |++.+|+.+.++++++...++.++++++|+.+.............  ...+..++++....              ..|++
T Consensus        89 GAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~--------------~~~~~  154 (528)
T COG0365          89 GAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG--------------LWYDE  154 (528)
T ss_pred             CCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------ccHHH
Confidence            999999999999999999999999999999987665432111100  00000133333221              56778


Q ss_pred             HHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcce-eeeeccccCCCCcEEEEecChHHHHHHH
Q 010774          204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ-MFVVTGKVCSEEDTYFSFLPLAHIYDQI  282 (501)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~-~~~~~~~~~~~~d~~l~~~pl~~~~g~~  282 (501)
                      +........+....+.+++++|+|||||||.||||+|+|+.++........ .+     .+..+|++++..++.|++|..
T Consensus       155 ~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~-----~~~~~Dv~w~~ad~GW~~g~~  229 (528)
T COG0365         155 AVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG-----DLLPGDRFWNSSDPGWIYGLW  229 (528)
T ss_pred             HhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh-----CCCCCCEEEeCCCchhhhCch
Confidence            777665555566688999999999999999999999999987777665433 34     667999999999999999999


Q ss_pred             H-HHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          283 I-ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       283 ~-~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      . ++.+|..|+++++..+    ++..+++.++++++|.++++|+.++.|.+.                            
T Consensus       230 ~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~----------------------------  281 (528)
T COG0365         230 YSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKL----------------------------  281 (528)
T ss_pred             HHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhc----------------------------
Confidence            6 8999999999999875    389999999999999999999999999872                            


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCc
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT  437 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s  437 (501)
                               ...+++|++        +||.+.++|||++++..+++.+.+|++|.+.||+||+|++......  ..++++
T Consensus       282 ---------g~~~~~dls--------sLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~--~~~~g~  342 (528)
T COG0365         282 ---------GLGEPYDLS--------SLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP--PVKNGS  342 (528)
T ss_pred             ---------CCcccccch--------hheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC--CcCCCC
Confidence                     226677776        8999999999999999999999999999999999999966555444  333466


Q ss_pred             ccccccCeEEEEeecCCCCccCCCCCCCceEEEecC--CccccccCCcccchhhhccCcccCCCC
Q 010774          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       438 ~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      .|+|+||+++.|+| ++|++++.+  + |+|+++.+  +++.+||+||+.+.+.+-+.||+|||.
T Consensus       343 ~g~p~pG~~~~vvd-d~g~~~~~~--~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~  403 (528)
T COG0365         343 SGLPLPGYAVRRVD-DEGNPVPPG--V-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDW  403 (528)
T ss_pred             CCCCCCCceeEEEC-CCCCcCCCC--c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCce
Confidence            69999999999999 888877766  6 99999987  999999999999988885559999995

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-53  Score=451.13  Aligned_cols=407  Identities=16%  Similarity=0.199  Sum_probs=305.9

Q ss_pred             CCHHHHHHHHHHh--CCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           43 ESPWQFFCDSAKR--IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        43 ~tl~~~l~~~a~~--~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ++..++|+++++.  +|+++|+++.   ...++..+.+||+||.++++++|+.|+++|+++||+|+++++|++++++++|
T Consensus        59 n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~l  135 (647)
T PTZ00237         59 NTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAML  135 (647)
T ss_pred             eHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4467778888764  7999999885   3333334789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCC---------hhhhhhcCccCCCCccEEEEecCCCh-hhHHH
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---------IPSILSCLPRCCLYLKTIVSFANVSS-SQKKE  190 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~  190 (501)
                      ||+++|++++|+++.++.+++.++|+.++++++|+++..         .+.+.+...........++.+..... .....
T Consensus       136 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~  215 (647)
T PTZ00237        136 SCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDL  215 (647)
T ss_pred             HHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccccccc
Confidence            999999999999999999999999999999999997632         11222221111011234444321110 00000


Q ss_pred             ----hhhcCceEeeHHHHHhcC-----CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHH-HHHHHhhcceeeeecc
Q 010774          191 ----AEELGVSCFSWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA-IVAEVLSVDQMFVVTG  260 (501)
Q Consensus       191 ----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~-l~~~~~~~~~~~~~~~  260 (501)
                          ..........+++++...     .........+++++++|+|||||||.||||+++|.+ +......+...+    
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~----  291 (647)
T PTZ00237        216 KKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII----  291 (647)
T ss_pred             ccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc----
Confidence                000001123466655421     111223345678999999999999999999999998 443333222222    


Q ss_pred             ccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecCC-------HHHHHHHHhhhcCcEEEecchHHHHHHHHHHHH
Q 010774          261 KVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD-------VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  333 (501)
Q Consensus       261 ~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  333 (501)
                       ....++++++..|+.|+.+...++.+|+.|+++++.+.+       +..+++.++++++|+++++|++++.+++.....
T Consensus       292 -~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  370 (647)
T PTZ00237        292 -EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEA  370 (647)
T ss_pred             -CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccc
Confidence             556789999999999987766788999999999997652       578999999999999999999999987621000


Q ss_pred             hhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeee
Q 010774          334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQ  413 (501)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~  413 (501)
                                                      ......++++        +||.+++||+++++++.+++++.+|+.+++
T Consensus       371 --------------------------------~~~~~~~~l~--------~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~  410 (647)
T PTZ00237        371 --------------------------------TIIRSKYDLS--------NLKEIWCGGEVIEESIPEYIENKLKIKSSR  410 (647)
T ss_pred             --------------------------------cccccccCcc--------hheEEEecCccCCHHHHHHHHHhcCCCEEe
Confidence                                            0001223333        899999999999999999999999999999


Q ss_pred             eecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecC---CccccccCCcccchhhh
Q 010774          414 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVI  490 (501)
Q Consensus       414 ~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~  490 (501)
                      .||+||++++++..........+++|+|+||++++|+| +++.+++.+  +.|||++++|   +++.|||++++.+.+.|
T Consensus       411 ~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~g--e~GEl~v~~p~~p~~~~gy~~~~~~~~~~f  487 (647)
T PTZ00237        411 GYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELNVN--EIGEVAFKLPMPPSFATTFYKNDEKFKQLF  487 (647)
T ss_pred             eechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCCCC--CceEEEEeccCCchhhCceeCCHHHHHHHH
Confidence            99999998765443332223348999999999999999 888887765  8999999986   78999999999998877


Q ss_pred             c--cCcccCCCC
Q 010774          491 V--DGWFHTEVH  500 (501)
Q Consensus       491 ~--dgw~~TGD~  500 (501)
                      .  +|||+|||.
T Consensus       488 ~~~~g~~~TGDl  499 (647)
T PTZ00237        488 SKFPGYYNSGDL  499 (647)
T ss_pred             hCCCCEEECCcE
Confidence            3  799999996

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=4.8e-53  Score=448.89  Aligned_cols=407  Identities=16%  Similarity=0.208  Sum_probs=309.9

Q ss_pred             CCCCCH-HHHHHHHHH-hCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHH
Q 010774           40 AGLESP-WQFFCDSAK-RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII  117 (501)
Q Consensus        40 ~~~~tl-~~~l~~~a~-~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~  117 (501)
                      ....|+ .++|+++++ .+|+++|+++.   ..+.+..+.+||+||.++++++|++|+++|+++||+|+++++|++++++
T Consensus        84 g~~~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~  160 (666)
T PLN02654         84 GGKTNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPI  160 (666)
T ss_pred             CCEeeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH
Confidence            333444 567777776 48999999875   3333445789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhh---------hhhcCccC---CCCccEEEEecCCCh
Q 010774          118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS---------ILSCLPRC---CLYLKTIVSFANVSS  185 (501)
Q Consensus       118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~---------~~~~~~~~---~~~~~~v~~~~~~~~  185 (501)
                      ++|||+++|++++|+++.++.+++..+++.++++++|+++.....         +.......   ......++.+.....
T Consensus       161 a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (666)
T PLN02654        161 AMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLA  240 (666)
T ss_pred             HHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccc
Confidence            999999999999999999999999999999999999998764321         11111100   011122222222110


Q ss_pred             hhHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHH-hhcceeeeeccccCC
Q 010774          186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV-LSVDQMFVVTGKVCS  264 (501)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~-~~~~~~~~~~~~~~~  264 (501)
                      ...............++++........+......+++++|+|||||||.||||+++|++++... ..+...+     ++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~  315 (666)
T PLN02654        241 MKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYK  315 (666)
T ss_pred             ccccccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCC
Confidence            0000000000011234555433221222333567999999999999999999999999986543 3344444     778


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCC
Q 010774          265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (501)
Q Consensus       265 ~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (501)
                      .+|++++..|+.|.++... ++.+|+.|+++++.++     ++..+++.|+++++|+++++|++++.|.+..        
T Consensus       316 ~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~--------  387 (666)
T PLN02654        316 PTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDG--------  387 (666)
T ss_pred             CCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhC--------
Confidence            8999999999999999875 7889999999999863     7899999999999999999999999987631        


Q ss_pred             hhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC---CCeeeee
Q 010774          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGY  415 (501)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~---~~l~~~y  415 (501)
                                                 .....+++++        +||.++++|+++++++.+++.+.+|   +.+.+.|
T Consensus       388 ---------------------------~~~~~~~~l~--------~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~y  432 (666)
T PLN02654        388 ---------------------------DEYVTRHSRK--------SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW  432 (666)
T ss_pred             ---------------------------ccccccCChh--------heeEEEEecCCCCHHHHHHHHHHhCCCCCceeccc
Confidence                                       0112233343        8999999999999999999999887   6899999


Q ss_pred             cccccCcceecccCCC-CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEec--CCccccccCCcccchhhh--
Q 010774          416 GLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI--  490 (501)
Q Consensus       416 G~tE~~~~~~~~~~~~-~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~--  490 (501)
                      |+||+++..+...... ...++++|+|+||++++|+| ++|++++.+  +.|||+|++  |+++.|||++++.+.+.+  
T Consensus       433 g~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~--~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~  509 (666)
T PLN02654        433 WQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGE--CSGYLCVKKSWPGAFRTLYGDHERYETTYFK  509 (666)
T ss_pred             cccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCC--CceEEEEcCCCchhhhhhcCChHHHHHhhhh
Confidence            9999987665443322 34568999999999999999 888877654  789999999  789999999999887765  


Q ss_pred             -ccCcccCCCC
Q 010774          491 -VDGWFHTEVH  500 (501)
Q Consensus       491 -~dgw~~TGD~  500 (501)
                       .+|||+|||.
T Consensus       510 ~~~g~~~TGD~  520 (666)
T PLN02654        510 PFAGYYFSGDG  520 (666)
T ss_pred             cCCCEEEeCce
Confidence             3899999996

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.9e-52  Score=441.83  Aligned_cols=386  Identities=19%  Similarity=0.333  Sum_probs=300.9

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.+.|+++++++|+++|+++.   + ..+.++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus        38 ~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA  113 (614)
T PRK08180         38 PRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALA  113 (614)
T ss_pred             CccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence            468999999999999999999864   2 223346899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCC-----HHHHHHHHHhcCceEEEEcCCC-hhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcC
Q 010774          122 CNSQAITYVPLYDTLG-----ANAVEFIINHAEVSIAFVQENK-IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vl~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (501)
                      |+++|++++|++|.++     .+++.++++.++++++|+++.. ..........  ... .++.......         .
T Consensus       114 ~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~---------~  181 (614)
T PRK08180        114 AMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVRGAVP---------G  181 (614)
T ss_pred             HHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEecCCCC---------C
Confidence            9999999999999998     7999999999999999997542 1111111111  111 2222221110         0


Q ss_pred             ceEeeHHHHHhcCCCC---CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCC--CCcEEE
Q 010774          196 VSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS--EEDTYF  270 (501)
Q Consensus       196 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~--~~d~~l  270 (501)
                      .....++++.......   .......++++++|+|||||||.||||++||++++.........+     ...  ..++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~l  256 (614)
T PRK08180        182 RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVLV  256 (614)
T ss_pred             cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEEE
Confidence            0123455555432111   111234568999999999999999999999999998887765544     332  568999


Q ss_pred             EecChHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010774          271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (501)
Q Consensus       271 ~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (501)
                      +.+|++|.+++.. ++.+++.|+++++.+.     ....+++.++++++|+++++|.+++.+++.+...           
T Consensus       257 ~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~-----------  325 (614)
T PRK08180        257 DWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERD-----------  325 (614)
T ss_pred             EecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhc-----------
Confidence            9999999999874 7789999999998752     3457788999999999999999999998743221           


Q ss_pred             HHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh----hC--CCeeeeeccc
Q 010774          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----SG--APLTQGYGLT  418 (501)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~----~~--~~l~~~yG~t  418 (501)
                                            +...+.++        ++||.+++||+++++++.++|.+.    +|  +.+++.||+|
T Consensus       326 ----------------------~~~~~~~~--------~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~T  375 (614)
T PRK08180        326 ----------------------AALRRRFF--------SRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMT  375 (614)
T ss_pred             ----------------------hhhhhhhc--------cceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeeccc
Confidence                                  11222223        389999999999999999999875    33  6799999999


Q ss_pred             ccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccC
Q 010774          419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT  497 (501)
Q Consensus       419 E~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~T  497 (501)
                      |++.+++...... ..++++|+|+||++++|+| ++         ..|||+|+|++++.|||++|+.+++.| .||||+|
T Consensus       376 E~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~~---------~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~T  444 (614)
T PRK08180        376 ETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-VG---------GKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS  444 (614)
T ss_pred             ccCCceEeccccc-CCCCcccCccCCcEEEEec-CC---------CCcEEEEecCccchhhcCChhHhHhhcccCCceec
Confidence            9987766543332 3458999999999999998 42         469999999999999999999999988 6899999


Q ss_pred             CCC
Q 010774          498 EVH  500 (501)
Q Consensus       498 GD~  500 (501)
                      ||.
T Consensus       445 GDl  447 (614)
T PRK08180        445 GDA  447 (614)
T ss_pred             cce
Confidence            995

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.7e-52  Score=435.37  Aligned_cols=384  Identities=21%  Similarity=0.212  Sum_probs=301.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ...++.+.|.+.++++|+++|+.+.   +.     +.+||+||.++++++|+.|.+.   +||+|+++++|++++++++|
T Consensus        17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~l   85 (539)
T PRK06334         17 SGKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYF   85 (539)
T ss_pred             cCCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHH
Confidence            3478999999999999999998754   32     3799999999999999999873   89999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEee
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (501)
                      ||+++|++++|+++.++.+++.++|+.++++++|++.+....+.+...........++.++.....            ..
T Consensus        86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~  153 (539)
T PRK06334         86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LS  153 (539)
T ss_pred             HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------cc
Confidence            999999999999999999999999999999999998765554432211100001123333221100            00


Q ss_pred             HHHHHhc-----CC-----CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEE
Q 010774          201 WEEFLQL-----GT-----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF  270 (501)
Q Consensus       201 ~~~~~~~-----~~-----~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (501)
                      +.+....     ..     .........++++++|+|||||||.||+|.+||+++..........+     ....+|+++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l  228 (539)
T PRK06334        154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMM  228 (539)
T ss_pred             HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEE
Confidence            0111000     00     00112234678999999999999999999999999998877765555     678899999


Q ss_pred             EecChHHHHHHHH-HHHHHhcCcEEEEec--CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010774          271 SFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (501)
Q Consensus       271 ~~~pl~~~~g~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (501)
                      +.+|++|.+++.. ++.++..|+++++..  .++..+++.|+++++|+++++|++++.+++.....              
T Consensus       229 ~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------  294 (539)
T PRK06334        229 SFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQ--------------  294 (539)
T ss_pred             EecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhc--------------
Confidence            9999999999875 778999999998875  38999999999999999999999999987632111              


Q ss_pred             HHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceec
Q 010774          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFT  426 (501)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~  426 (501)
                                             ..++        ++||.+++||+++++++.+++.+.+ ++.+++.||+||++.+++.
T Consensus       295 -----------------------~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  343 (539)
T PRK06334        295 -----------------------ESCL--------PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI  343 (539)
T ss_pred             -----------------------cccc--------ccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEe
Confidence                                   1111        3899999999999999999999988 6889999999999887766


Q ss_pred             ccCCCCcccCcccccccCeEEEEeecCC-CCccCCCCCCCceEEEecCCccccccCCcccchhhh--ccCcccCCCC
Q 010774          427 SLADVFNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDGWFHTEVH  500 (501)
Q Consensus       427 ~~~~~~~~~~s~G~p~p~~~i~I~d~~~-~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~dgw~~TGD~  500 (501)
                      ...+.....+++|+|++|++++|+| ++ +.+++.|  +.|||+|+|++++.|||++++.+....  .+|||+|||.
T Consensus       344 ~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~  417 (539)
T PRK06334        344 NTVNSPKHESCVGMPIRGMDVLIVS-EETKVPVSSG--ETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDL  417 (539)
T ss_pred             ccCCCCCCCCcCceecCCCEEEEEc-CCCCccCCCC--ceEEEEEecCcccccccCCcccccceeeCCceeEECCCE
Confidence            5444434457899999999999999 54 5556555  899999999999999999998654322  3689999995

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=4.8e-52  Score=439.67  Aligned_cols=403  Identities=22%  Similarity=0.290  Sum_probs=312.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      .+.|+.++|.+.++.+|+++|+++... ++.....+++||+||..++.++|++|+++|+++||+|+++++|++++++++|
T Consensus        23 ~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l  101 (632)
T PRK07529         23 LPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW  101 (632)
T ss_pred             CCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            346899999999999999999987511 1111234689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhhhhcCccCCCCccEEEEecCCChhh--HHHh--
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQ--KKEA--  191 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~--  191 (501)
                      ||+++| +++|++|.++.+++.++++.++++++|++....     +.+..... ....++.++.++......  +...  
T Consensus       102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (632)
T PRK07529        102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLA-ALPELRTVVEVDLARYLPGPKRLAVP  179 (632)
T ss_pred             HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHh-cCCcceeEEEecCccccccccccccc
Confidence            999999 579999999999999999999999999986542     22222111 223455555554321100  0000  


Q ss_pred             ---hhcCceEeeHHHHHhcCCCC--CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCC
Q 010774          192 ---EELGVSCFSWEEFLQLGTLD--CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE  266 (501)
Q Consensus       192 ---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~  266 (501)
                         ......+..+.+.+......  ........+++++|+|||||||.||+|.+||++++.........+     .+..+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~  254 (632)
T PRK07529        180 LIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPG  254 (632)
T ss_pred             ccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCC
Confidence               00112244566655443211  112234678999999999999999999999999998887765555     66889


Q ss_pred             cEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC----C---HHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCC
Q 010774          267 DTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (501)
Q Consensus       267 d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~----~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (501)
                      |++++.+|++|.++... ++.++..|+++++...    +   ...+++.++++++|++.++|++++.+++..        
T Consensus       255 d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~--------  326 (632)
T PRK07529        255 DTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP--------  326 (632)
T ss_pred             CEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc--------
Confidence            99999999999999885 7889999999998753    2   367889999999999999999999987521        


Q ss_pred             hhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeeccc
Q 010774          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT  418 (501)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~t  418 (501)
                                                    ....++        ++||.+++||+++++++.++|++.+++++++.||+|
T Consensus       327 ------------------------------~~~~~~--------~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~T  368 (632)
T PRK07529        327 ------------------------------VDGHDI--------SSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLT  368 (632)
T ss_pred             ------------------------------ccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeeccc
Confidence                                          001112        389999999999999999999999999999999999


Q ss_pred             ccCcceecccCCCCcccCcccccccCeEEEEeec-CCC---CccCCCCCCCceEEEecCCccccccCCcccchhhh-ccC
Q 010774          419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV-PEM---GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDG  493 (501)
Q Consensus       419 E~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~-~~~---~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dg  493 (501)
                      |++.+++....+.....+++|+|+|+++++|+++ +++   .+++.+  +.|||+|+|++++.||++++. +...+ .+|
T Consensus       369 E~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g--~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~g  445 (632)
T PRK07529        369 EATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVD--EVGVLCIAGPNVFSGYLEAAH-NKGLWLEDG  445 (632)
T ss_pred             ccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCC--CceEEEEECCCccccccCCcc-ccccccCCC
Confidence            9988776665544445689999999999999642 444   445444  899999999999999998754 45555 789


Q ss_pred             cccCCCC
Q 010774          494 WFHTEVH  500 (501)
Q Consensus       494 w~~TGD~  500 (501)
                      ||+|||.
T Consensus       446 w~~TGDl  452 (632)
T PRK07529        446 WLNTGDL  452 (632)
T ss_pred             ceEcCcE
Confidence            9999995

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.5e-52  Score=438.10  Aligned_cols=389  Identities=20%  Similarity=0.328  Sum_probs=300.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....++.+.|+++++.+|+++|+++.   +...+.++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        46 ~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~  122 (624)
T PRK12582         46 PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMT  122 (624)
T ss_pred             CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence            35678999999999999999999875   332344578999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCH-----HHHHHHHHhcCceEEEEcCCC-hhhhhhcCccCCCCccEEEEecCCChhhHHHhhh
Q 010774          120 EACNSQAITYVPLYDTLGA-----NAVEFIINHAEVSIAFVQENK-IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE  193 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vl~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  193 (501)
                      |||+++|++++|++|.++.     +++.++++.++++++|+++.. ..........  ... .++.+.....        
T Consensus       123 lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~--------  191 (624)
T PRK12582        123 LAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL--LDV-TVVHVTGPGE--------  191 (624)
T ss_pred             HHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh--cCc-eEEEEcCCCc--------
Confidence            9999999999999999885     899999999999999998642 1111121111  112 2333322110        


Q ss_pred             cCceEeeHHHHHhcCCCC---CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCC---CCc
Q 010774          194 LGVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS---EED  267 (501)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~---~~d  267 (501)
                       ......++++.......   .......++++++|+|||||||.||||++||++++.........+     ...   ..+
T Consensus       192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~  265 (624)
T PRK12582        192 -GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR-----PREPDPPPP  265 (624)
T ss_pred             -ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc-----cccCCCCCc
Confidence             00123445544322111   111224568899999999999999999999999998876654332     222   357


Q ss_pred             EEEEecChHHHHHHHH-HHHHHhcCcEEEEecC--C---HHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhH
Q 010774          268 TYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS  341 (501)
Q Consensus       268 ~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~--~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  341 (501)
                      ++++.+|++|.+|+.. ++.+++.|+++++.+.  .   ...+++.++++++|+++++|.+++.+++.+..         
T Consensus       266 ~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~---------  336 (624)
T PRK12582        266 VSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEK---------  336 (624)
T ss_pred             eEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhh---------
Confidence            9999999999999875 6678999999998653  2   34567788999999999999999988764321         


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh------CCCeeeee
Q 010774          342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS------GAPLTQGY  415 (501)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~------~~~l~~~y  415 (501)
                                              .+...+.+++        +||.+++||+++++++.++|++.+      ++.+++.|
T Consensus       337 ------------------------~~~~~~~~~~--------slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~Y  384 (624)
T PRK12582        337 ------------------------DDALRRSFFK--------NLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGY  384 (624)
T ss_pred             ------------------------CHHHHHHHhh--------heeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEecc
Confidence                                    1223333443        899999999999999999998863      36799999


Q ss_pred             cccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCc
Q 010774          416 GLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGW  494 (501)
Q Consensus       416 G~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw  494 (501)
                      |+||++.+++..... ....+++|+|+||++++|++          .|+.|||+|+|++++.|||++|+.+++.| .|||
T Consensus       385 G~TE~~~~~~~~~~~-~~~~~svG~p~pg~~v~i~~----------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw  453 (624)
T PRK12582        385 GATETAPTTTGTHWD-TERVGLIGLPLPGVELKLAP----------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGF  453 (624)
T ss_pred             ccccccceeecccCC-CCCCCCCCcCCCCcEEEEcc----------CCCceEEEEECCcccccccCCccchhhhcCccCC
Confidence            999998766533322 24458999999999999975          23689999999999999999999999988 7899


Q ss_pred             ccCCCC
Q 010774          495 FHTEVH  500 (501)
Q Consensus       495 ~~TGD~  500 (501)
                      |+|||.
T Consensus       454 ~~TGDl  459 (624)
T PRK12582        454 YRLGDA  459 (624)
T ss_pred             ccccce
Confidence            999995

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=4.6e-52  Score=435.17  Aligned_cols=391  Identities=21%  Similarity=0.186  Sum_probs=303.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ..-++.+.|.+.++++|+++|+++.   +      +.+||+||.++++++|++|.++|+++||+|+++++|++++++++|
T Consensus         5 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~l   75 (563)
T PLN02860          5 SQAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLL   75 (563)
T ss_pred             hhhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3467999999999999999999754   2      479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEee
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (501)
                      ||+++|++++|+++.++.+++.++++.+++++++++.+...............+..++...........    .......
T Consensus        76 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~  151 (563)
T PLN02860         76 AVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFI----FLNSFLT  151 (563)
T ss_pred             HHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccccc----chhhccc
Confidence            999999999999999999999999999999999998765332212111122223333333321100000    0000111


Q ss_pred             HHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       201 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                      .+++.... ..........++++++|+|||||||.||+|.++|.+++.........+     .+..+|+++...|++|.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~  226 (563)
T PLN02860        152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIG  226 (563)
T ss_pred             cchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhc
Confidence            12221111 001111223568899999999999999999999999988776654444     678899999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhcc
Q 010774          280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (501)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (501)
                      ++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.....                         
T Consensus       227 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------------------  281 (563)
T PLN02860        227 GLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKS-------------------------  281 (563)
T ss_pred             cHHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhh-------------------------
Confidence            98888899999999988765 9999999999999999999999999987632110                         


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCC------
Q 010774          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV------  431 (501)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~------  431 (501)
                                ....++        +++|.+++||+++++++.+.|++.| +..+++.||+||+++.++......      
T Consensus       282 ----------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  343 (563)
T PLN02860        282 ----------MTWKVF--------PSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESP  343 (563)
T ss_pred             ----------hccccc--------cceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccc
Confidence                      000111        3899999999999999999999988 789999999999987554322111      


Q ss_pred             ----------------CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCc
Q 010774          432 ----------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGW  494 (501)
Q Consensus       432 ----------------~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw  494 (501)
                                      .....++|+|+|+++++|++ ++       .++.|||+|+|++++.|||++++.+++.+ .|||
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~  415 (563)
T PLN02860        344 KQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGW  415 (563)
T ss_pred             hhhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCe
Confidence                            11123789999999999998 54       23799999999999999999999999888 7899


Q ss_pred             ccCCCC
Q 010774          495 FHTEVH  500 (501)
Q Consensus       495 ~~TGD~  500 (501)
                      |+|||.
T Consensus       416 ~~TGDl  421 (563)
T PLN02860        416 LDTGDI  421 (563)
T ss_pred             EEccce
Confidence            999995

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=3.1e-52  Score=441.87  Aligned_cols=398  Identities=19%  Similarity=0.257  Sum_probs=312.7

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010774           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (501)
Q Consensus        44 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~  123 (501)
                      ...+.|+++++.+|+++|+++.   +...+..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++|||+
T Consensus        58 ~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~  134 (625)
T TIGR02188        58 VSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACA  134 (625)
T ss_pred             HHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            4567788888899999999986   4323445789999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChh---------hhhhcCccCCC-CccEEEEecCCChhhHHHhhh
Q 010774          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCL-YLKTIVSFANVSSSQKKEAEE  193 (501)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~---------~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~  193 (501)
                      ++|++++|+++.++.+++.++++.++++++|+++....         .+..... ... .++.++.+........ .   
T Consensus       135 ~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~---  209 (625)
T TIGR02188       135 RIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALE-KCPVSVEHVLVVRRTGNPVP-W---  209 (625)
T ss_pred             HhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHH-hCCCCccEEEEEcCCCCCcC-c---
Confidence            99999999999999999999999999999999875321         1111111 112 3445555533211000 0   


Q ss_pred             cCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-cceeeeeccccCCCCcEEEEe
Q 010774          194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFSF  272 (501)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~  272 (501)
                      .......+++++..............+++++|+|||||||.||||+++|.+++..... ....+     ++..+|++++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~~  284 (625)
T TIGR02188       210 VEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGDIFWCT  284 (625)
T ss_pred             cccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCcEEEEC
Confidence            0011234556554432223334456789999999999999999999999998765433 22233     67788999999


Q ss_pred             cChHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHH
Q 010774          273 LPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (501)
Q Consensus       273 ~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (501)
                      .|++|..+... ++.+|+.|+++++...     ++..+++.++++++|+++++|++++.+.+...               
T Consensus       285 ~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------------  349 (625)
T TIGR02188       285 ADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGD---------------  349 (625)
T ss_pred             CCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCC---------------
Confidence            99999988765 7889999999998753     78999999999999999999999999876310               


Q ss_pred             HHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC---CCeeeeecccccCcc
Q 010774          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCSG  423 (501)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~---~~l~~~yG~tE~~~~  423 (501)
                                          ...++.++        ++||.+++||+++++++.+++.+.++   +++++.||+||+++.
T Consensus       350 --------------------~~~~~~~l--------~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~  401 (625)
T TIGR02188       350 --------------------EWVKKHDL--------SSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGI  401 (625)
T ss_pred             --------------------cccccCCc--------cceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCc
Confidence                                11122233        38999999999999999999999875   789999999999887


Q ss_pred             eecccCC-CCcccCcccccccCeEEEEeecCCCCccC-CCCCCCceEEEec--CCccccccCCcccchhhh---ccCccc
Q 010774          424 CFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDA-LSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWFH  496 (501)
Q Consensus       424 ~~~~~~~-~~~~~~s~G~p~p~~~i~I~d~~~~~~~~-~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~dgw~~  496 (501)
                      ++..... ...+++++|+|++|++++|+| ++++.++ .+  +.|||+|+|  |+++.|||++++.+.+.+   .+|||+
T Consensus       402 ~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g--~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~  478 (625)
T TIGR02188       402 MITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPG--EGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYF  478 (625)
T ss_pred             eeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCC--CeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEE
Confidence            6544332 234568999999999999999 8888776 44  899999999  689999999998877765   479999


Q ss_pred             CCCC
Q 010774          497 TEVH  500 (501)
Q Consensus       497 TGD~  500 (501)
                      |||.
T Consensus       479 TGDl  482 (625)
T TIGR02188       479 TGDG  482 (625)
T ss_pred             CCce
Confidence            9995

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.5e-52  Score=434.46  Aligned_cols=385  Identities=19%  Similarity=0.198  Sum_probs=313.1

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      .++.++|.++++.+|+++|+++.   +      +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~  119 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA  119 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48999999999999999999864   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHH
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (501)
                      +++|++++|+++.++.+++.++++.++++++|++.+....+... ......+..++.......       .....+..++
T Consensus       120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  191 (549)
T PRK07788        120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSAL-PPDLGRLRAWGGNPDDDE-------PSGSTDETLD  191 (549)
T ss_pred             HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhh-ccccccceEEEEecCccc-------cCCcCcccHH
Confidence            99999999999999999999999999999999998766654332 111222222222211110       0012345677


Q ss_pred             HHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHH
Q 010774          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI  282 (501)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  282 (501)
                      ++......  ...+...++.++++|||||||.||+|.++|.+++..+..+...+     .+..+++++...|++|.+|+.
T Consensus       192 ~~~~~~~~--~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~  264 (549)
T PRK07788        192 DLIAGSST--APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGWA  264 (549)
T ss_pred             HHhcCCCC--CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHHH
Confidence            77654321  12223456789999999999999999999999998877765555     677889999999999999998


Q ss_pred             HHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCC
Q 010774          283 IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP  361 (501)
Q Consensus       283 ~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (501)
                      .++.++..|+++++... ++..+++.++++++|+++++|++++.+++.....                            
T Consensus       265 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------------------------  316 (549)
T PRK07788        265 HLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEV----------------------------  316 (549)
T ss_pred             HHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccc----------------------------
Confidence            78889999999988764 9999999999999999999999999987632110                            


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCccccc
Q 010774          362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP  441 (501)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p  441 (501)
                             ....++        ++||.+++||+++++++.+++.+.++..+++.||+||++.++.....+....++++|+|
T Consensus       317 -------~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~  381 (549)
T PRK07788        317 -------LAKYDT--------SSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRP  381 (549)
T ss_pred             -------cCCCCC--------CceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccC
Confidence                   011111        38999999999999999999999999999999999999876554443333455899999


Q ss_pred             ccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       442 ~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +++++++|+| +++.+++.|  +.|||+|+|+.++.||+++++.   ...+|||+|||.
T Consensus       382 ~~~~~~~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl  434 (549)
T PRK07788        382 PKGVTVKILD-ENGNEVPRG--VVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDV  434 (549)
T ss_pred             CCCcEEEEEC-CCcCCCCCC--CeEEEEEeCCCccccccCCCcc---cccCCceecCce
Confidence            9999999999 888877775  8999999999999999998765   235899999995

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-51  Score=433.40  Aligned_cols=391  Identities=16%  Similarity=0.238  Sum_probs=318.6

Q ss_pred             CCHHHHHHHHHH-hCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           43 ESPWQFFCDSAK-RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        43 ~tl~~~l~~~a~-~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      +.+.+.+.+++. .+|+++|+.+.   +..  ..+.+||+||.++++++|++|.++|+++||+|+++++|++++++++||
T Consensus        43 ~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la  117 (570)
T PRK04319         43 NIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLG  117 (570)
T ss_pred             eHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence            445678888877 47999999876   432  236899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|+++.++.+++.++++.++++.++++.........   ......+.++.++....        .......+
T Consensus       118 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~~  186 (570)
T PRK04319        118 ALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA---DDLPSLKHVLLVGEDVE--------EGPGTLDF  186 (570)
T ss_pred             HHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch---hcCCCceEEEEECCCcC--------CCcCccCH
Confidence            99999999999999999999999999999999998775543321   12233445555543211        01123456


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                      .+++.............++++++++|||||||.||+|.++|.+++..+......+     .+..+|++++..|++|.+|.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~g~  261 (570)
T PRK04319        187 NALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWVTGT  261 (570)
T ss_pred             HHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHhhCc
Confidence            6655443222333444678899999999999999999999999998887766655     67889999999999999987


Q ss_pred             HH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhcc
Q 010774          282 II-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (501)
Q Consensus       282 ~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (501)
                      .. ++.++..|+++++...  ++..+++.++++++|+++++|.+++.+++...                           
T Consensus       262 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------  314 (570)
T PRK04319        262 SYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGD---------------------------  314 (570)
T ss_pred             hHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCC---------------------------
Confidence            75 7889999999998753  89999999999999999999999999875210                           


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcc
Q 010774          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV  438 (501)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~  438 (501)
                              ......++        +++|.+++||+++++++.+++++.++.++++.||+||++++++.........++++
T Consensus       315 --------~~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~  378 (570)
T PRK04319        315 --------DLVKKYDL--------SSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSM  378 (570)
T ss_pred             --------cccccCCc--------ccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcC
Confidence                    00111222        38999999999999999999999999999999999999887665444334456899


Q ss_pred             cccccCeEEEEeecCCCCccCCCCCCCceEEEec--CCccccccCCcccchhhhccCcccCCCC
Q 010774          439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       439 G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      |+|+||++++|+| +++.+++.|  +.|||+++|  ++++.|||++++.+++.|.+|||+|||.
T Consensus       379 G~p~~g~~~~i~d-~~~~~~~~g--~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl  439 (570)
T PRK04319        379 GKPLPGIEAAIVD-DQGNELPPN--RMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDS  439 (570)
T ss_pred             cCCCCCCEEEEEC-CCCCCCCCC--CceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcE
Confidence            9999999999999 888877655  899999997  8999999999999999888999999995

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=4.8e-51  Score=426.36  Aligned_cols=387  Identities=22%  Similarity=0.276  Sum_probs=313.3

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      .++.+.|++.++.+|+++|+++.   +...+..+.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~  100 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC  100 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence            57999999999999999999876   433334478999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCce
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (501)
                      +++|++++|++|.++.+++.++++.++++++++++...     +.+.+ .......+..++.++...             
T Consensus       101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------  166 (547)
T PRK13295        101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARR-LRPELPALRHVVVVGGDG-------------  166 (547)
T ss_pred             HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHH-HhhhCCCcceEEEecCCC-------------
Confidence            99999999999999999999999999999999987642     11111 111223444555544321             


Q ss_pred             EeeHHHHHhcC--------CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEE
Q 010774          198 CFSWEEFLQLG--------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY  269 (501)
Q Consensus       198 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (501)
                      ...+.++....        ...........+++++|+|||||||.||+|.++|.+++..+......+     .+..++++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~  241 (547)
T PRK13295        167 ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDVI  241 (547)
T ss_pred             ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCeE
Confidence            11233332211        001112234568899999999999999999999999998887765555     67889999


Q ss_pred             EEecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010774          270 FSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (501)
Q Consensus       270 l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (501)
                      ++..|++|..++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+.+....               
T Consensus       242 l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~---------------  306 (547)
T PRK13295        242 LMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKE---------------  306 (547)
T ss_pred             EEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc---------------
Confidence            99999999999875 7889999999998775 899999999999999999999999988753211               


Q ss_pred             HHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecc
Q 010774          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS  427 (501)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~  427 (501)
                                            ...++        +++|.+++||+++++++.+++.+.+++.+++.||+||++.+++..
T Consensus       307 ----------------------~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  356 (547)
T PRK13295        307 ----------------------SGRPV--------SSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTK  356 (547)
T ss_pred             ----------------------cCCCc--------ccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeecc
Confidence                                  01111        389999999999999999999998999999999999998765544


Q ss_pred             cCCC-CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          428 LADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       428 ~~~~-~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      .... .....++|+|+++++++|+| +++.+++.|  +.|||+|+|++++.||+++++.++.. .+|||+|||.
T Consensus       357 ~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~  426 (547)
T PRK13295        357 LDDPDERASTTDGCPLPGVEVRVVD-ADGAPLPAG--QIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDL  426 (547)
T ss_pred             CCCcchhccCccccccCCcEEEEEC-CCCCCCCCC--CCCeEEEEcCcccccccCCccccccC-CCCCeecceE
Confidence            3222 22346899999999999999 888877665  89999999999999999999988766 5899999995

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.2e-51  Score=433.94  Aligned_cols=397  Identities=19%  Similarity=0.257  Sum_probs=310.6

Q ss_pred             HHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHh
Q 010774           45 PWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS  124 (501)
Q Consensus        45 l~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~  124 (501)
                      ..+.|+++++.+|+++|+++.   +..++..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus        69 ~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  145 (637)
T PRK00174         69 SYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACAR  145 (637)
T ss_pred             HHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            456788889999999999986   43333457899999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChh---------hhhhcCccCCCCccEEEEecCCChhhHHHhhhcC
Q 010774          125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (501)
Q Consensus       125 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (501)
                      +|++++|++|.++.+++.++++.++++++|+++....         .+..... ....++.++.+........ .   ..
T Consensus       146 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~---~~  220 (637)
T PRK00174        146 IGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALA-NCPSVEKVIVVRRTGGDVD-W---VE  220 (637)
T ss_pred             cCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHH-hCCCccEEEEEcCCCCCcC-c---CC
Confidence            9999999999999999999999999999999875421         1111111 1234445555543221000 0   00


Q ss_pred             ceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-cceeeeeccccCCCCcEEEEecC
Q 010774          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFSFLP  274 (501)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~~p  274 (501)
                      .....++++...............+++++|+|||||||.||||+++|++++..... ....+     .+..+|++++..|
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~  295 (637)
T PRK00174        221 GRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYWCTAD  295 (637)
T ss_pred             CCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEEEcCC
Confidence            11234556554332223334456789999999999999999999999998765433 22233     6678899999999


Q ss_pred             hHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 010774          275 LAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA  348 (501)
Q Consensus       275 l~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (501)
                      ++|..+... ++.+|+.|+++++.+.     ++..+++.++++++|++.++|++++.+++....                
T Consensus       296 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------  359 (637)
T PRK00174        296 VGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDE----------------  359 (637)
T ss_pred             chHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCc----------------
Confidence            999998874 7889999999998753     789999999999999999999999988752100                


Q ss_pred             HHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC---CCeeeeecccccCccee
Q 010774          349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCSGCF  425 (501)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~---~~l~~~yG~tE~~~~~~  425 (501)
                                         .....++        ++||.+++||+++++++.+++.+.++   +++++.||+||++++++
T Consensus       360 -------------------~~~~~~~--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  412 (637)
T PRK00174        360 -------------------HPKKYDL--------SSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMI  412 (637)
T ss_pred             -------------------ccccCCc--------cceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceE
Confidence                               0111222        38999999999999999999998875   78999999999988765


Q ss_pred             cccCCC-CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEec--CCccccccCCcccchhhh---ccCcccCCC
Q 010774          426 TSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWFHTEV  499 (501)
Q Consensus       426 ~~~~~~-~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~dgw~~TGD  499 (501)
                      ...... ...++++|+|++|++++|+| +++.+++.+  +.|||+|+|  |+++.|||++++.+.+.+   .+|||+|||
T Consensus       413 ~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g--~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD  489 (637)
T PRK00174        413 TPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGG--EGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGD  489 (637)
T ss_pred             ecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCC--CcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCc
Confidence            443322 33458999999999999999 888887765  899999999  699999999998877765   479999999


Q ss_pred             C
Q 010774          500 H  500 (501)
Q Consensus       500 ~  500 (501)
                      .
T Consensus       490 l  490 (637)
T PRK00174        490 G  490 (637)
T ss_pred             e
Confidence            4

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=3.7e-51  Score=433.15  Aligned_cols=399  Identities=16%  Similarity=0.152  Sum_probs=306.6

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010774           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (501)
Q Consensus        44 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~  123 (501)
                      ...+.|+++++.+|+++|+++.   +...+..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++|||+
T Consensus        53 ~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~  129 (628)
T TIGR02316        53 LCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACA  129 (628)
T ss_pred             HHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            3467888888899999999985   4333444789999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhhhhcCccCCCCccEEEEecCCChhhHHHhhhc
Q 010774          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (501)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  194 (501)
                      ++|++++|+++.++.+++..+++.++++++|+++...         ..+.............++.++......    ...
T Consensus       130 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~~  205 (628)
T TIGR02316       130 RIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM----RLI  205 (628)
T ss_pred             HhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----Ccc
Confidence            9999999999999999999999999999999986432         111111111112334555554321100    000


Q ss_pred             CceEeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH-HhhcceeeeeccccCCCCcEEEEe
Q 010774          195 GVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEEDTYFSF  272 (501)
Q Consensus       195 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~~l~~  272 (501)
                      ......++++..... ...+.....++++++|+|||||||.||||+++|.+++.. ...+...+     ++..+|++++.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~~  280 (628)
T TIGR02316       206 PGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQVMFSA  280 (628)
T ss_pred             cCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcEEEEc
Confidence            001234555544321 112222346789999999999999999999999998644 33333344     67889999999


Q ss_pred             cChHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHH
Q 010774          273 LPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (501)
Q Consensus       273 ~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (501)
                      .|+.|..++.. ++.+|+.|+++++.++     ++..+++.++++++|+++++|++++.+.+..                
T Consensus       281 ~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------------  344 (628)
T TIGR02316       281 SDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQD----------------  344 (628)
T ss_pred             CCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcC----------------
Confidence            99999998764 7889999999999763     7889999999999999999999999876521                


Q ss_pred             HHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceec
Q 010774          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT  426 (501)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~  426 (501)
                                         .....+.++        ++||.+++||+++++++.+++++.++..+++.||+||++..++.
T Consensus       345 -------------------~~~~~~~~l--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~  397 (628)
T TIGR02316       345 -------------------AAWLRKHDL--------SSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLA  397 (628)
T ss_pred             -------------------CcccccCCc--------cceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeec
Confidence                               011122233        38999999999999999999999889999999999999865443


Q ss_pred             ccCC---CCcccCcccccccCeEEEEeecC-CCCccCCCCCCCceEEEecC---CccccccCCcccchhhh----ccCcc
Q 010774          427 SLAD---VFNMIGTVGVPMTTVEARLESVP-EMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVI----VDGWF  495 (501)
Q Consensus       427 ~~~~---~~~~~~s~G~p~p~~~i~I~d~~-~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~----~dgw~  495 (501)
                      ....   .....+++|+|+||++++|+| + ++++++.+  +.|||+|+||   +.+.|||++++.+.+.+    .+|||
T Consensus       398 ~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~~~~g--~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  474 (628)
T TIGR02316       398 IMPGLDLKPVKLGSPGLPMYGYHLRVLD-EATGRPCGPN--EKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLY  474 (628)
T ss_pred             CCCCCCcCCCCCCCcccCcCCceEEEEE-CCCCCCCCCC--CcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEE
Confidence            3222   123458999999999999999 6 67777655  8999999998   57899999988776544    57899


Q ss_pred             cCCCC
Q 010774          496 HTEVH  500 (501)
Q Consensus       496 ~TGD~  500 (501)
                      +|||.
T Consensus       475 ~TGD~  479 (628)
T TIGR02316       475 SSFDW  479 (628)
T ss_pred             ECCce
Confidence            99995

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=3.1e-52  Score=421.25  Aligned_cols=380  Identities=28%  Similarity=0.457  Sum_probs=293.2

Q ss_pred             HHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCE
Q 010774           49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT  128 (501)
Q Consensus        49 l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  128 (501)
                      |+++|+++||++|+++.   +.     +.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~   72 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI   72 (417)
T ss_dssp             HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred             ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence            68999999999999971   22     69999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCHHHHHHHHHhcCceEEEE----cCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHH
Q 010774          129 YVPLYDTLGANAVEFIINHAEVSIAFV----QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEF  204 (501)
Q Consensus       129 ~v~l~~~~~~~~l~~~l~~~~~~~vl~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (501)
                      ++|++|.++.+++.++++.++++++|+    +......+..... .......++.++.......             +.+
T Consensus        73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------~~~  138 (417)
T PF00501_consen   73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFK-QEDPSSSIIILDRDDLPKK-------------EAL  138 (417)
T ss_dssp             EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHT-TSTTTEEEEEESHSSCTTC-------------HHH
T ss_pred             ccccccccccccccccccccceeEEEEeccccccccccchhhhc-ccccccccccccccccccc-------------ccc
Confidence            999999999999999999999999998    1111111212111 1122334444443221100             000


Q ss_pred             HhcC-CCCCCCCC-CCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH-
Q 010774          205 LQLG-TLDCELPP-KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ-  281 (501)
Q Consensus       205 ~~~~-~~~~~~~~-~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~-  281 (501)
                      .... ..... .. ..++++++++|||||||.||+|.++|+++++.+..+.  +... ..+.  |++++.+|++|.+|+ 
T Consensus       139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~  212 (417)
T PF00501_consen  139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLI  212 (417)
T ss_dssp             HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHH
T ss_pred             cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeecccccccccc
Confidence            1000 00000 00 0468999999999999999999999999999988764  1000 1222  699999999999999 


Q ss_pred             HHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      ..++.+++.|+++++.+.    ++..+++.++++++|+++++|.+++.+++..+.. .                      
T Consensus       213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~----------------------  269 (417)
T PF00501_consen  213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-T----------------------  269 (417)
T ss_dssp             HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-H----------------------
T ss_pred             ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-c----------------------
Confidence            569999999999999986    2477899999999999999999999997621110 0                      


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCC-CeeeeecccccCcceeccc-CCCCccc
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSL-ADVFNMI  435 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~-~l~~~yG~tE~~~~~~~~~-~~~~~~~  435 (501)
                                .....++        +++|.+++||+++++++.+++++.++. ++++.||+||++.+++... .......
T Consensus       270 ----------~~~~~~l--------~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~  331 (417)
T PF00501_consen  270 ----------KISKKDL--------SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKP  331 (417)
T ss_dssp             ----------HGTTTTG--------TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSST
T ss_pred             ----------ccccccc--------ccccccccccccCChhhccccccccccccceecccccccceeeeccccccccccc
Confidence                      0000112        379999999999999999999999987 8999999999999987653 2333456


Q ss_pred             CcccccccCeEEEEeecCC-CCccCCCCCCCceEEEecCCccccccCCcccchhhhc-cCcccCCCC
Q 010774          436 GTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTEVH  500 (501)
Q Consensus       436 ~s~G~p~p~~~i~I~d~~~-~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-dgw~~TGD~  500 (501)
                      +++|+|+|+++++|+| ++ +++++.+  +.|||+|+|++++.||+++++.+++.|. +|||+|||.
T Consensus       332 ~~~G~~~~~~~~~ivd-~~~~~~~~~g--~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~  395 (417)
T PF00501_consen  332 GSVGKPLPGVEVKIVD-PNTGEPLPPG--EPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDL  395 (417)
T ss_dssp             TSEBEESTTEEEEEEC-TTTSSBESTT--SEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEE
T ss_pred             cccccccccccccccc-cccccccccc--ccccccccCCccceeeeccccccccccccccceecceE
Confidence            8999999999999999 65 7777665  8999999999999999999999999995 489999995

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1e-50  Score=424.75  Aligned_cols=410  Identities=20%  Similarity=0.252  Sum_probs=308.4

Q ss_pred             CCcccccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHh-CCCCC
Q 010774           23 GPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNP  101 (501)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~  101 (501)
                      .+++++..+...++..  ...++.+.+... +.+|+++|+++.   +..    ..+||+||.++++++|++|.+ .|+++
T Consensus        22 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~   91 (560)
T PLN02574         22 TGIYSSKHPPVPLPSD--PNLDAVSFIFSH-HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQ   91 (560)
T ss_pred             CeeecCCCCCCCCCCC--CCCCHHHHHhcC-cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3555555433222221  223444444433 678999999864   321    369999999999999999999 99999


Q ss_pred             CCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEec
Q 010774          102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA  181 (501)
Q Consensus       102 gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~  181 (501)
                      ||+|+++++|++++++++|||+++|++++|++|..+.+++.++++.++++++|++.+....+...      ... ++.+.
T Consensus        92 gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~  164 (560)
T PLN02574         92 GDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGVP  164 (560)
T ss_pred             CCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEecC
Confidence            99999999999999999999999999999999999999999999999999999988765554321      111 22221


Q ss_pred             CCChhhHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccc
Q 010774          182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK  261 (501)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~  261 (501)
                      .......     .......+++++.............++++++++|||||||.||||++||++++..+..+.........
T Consensus       165 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  239 (560)
T PLN02574        165 ENYDFDS-----KRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYE  239 (560)
T ss_pred             ccccccc-----CccCcccHHHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccc
Confidence            1100000     00112345555444322222333457889999999999999999999999999877655331111111


Q ss_pred             cCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCCh
Q 010774          262 VCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA  339 (501)
Q Consensus       262 ~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  339 (501)
                      .....++++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|+++++|.+++.+++....       
T Consensus       240 ~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------  312 (560)
T PLN02574        240 YPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKG-------  312 (560)
T ss_pred             cCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccc-------
Confidence            2335688999999999999886 6678889999988875 999999999999999999999999998762100       


Q ss_pred             hHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeeccc
Q 010774          340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLT  418 (501)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~t  418 (501)
                                                   ....++        +++|.+++||+++++++.++|.+.+ ++.+++.||+|
T Consensus       313 -----------------------------~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~t  355 (560)
T PLN02574        313 -----------------------------VCGEVL--------KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMT  355 (560)
T ss_pred             -----------------------------cccCcc--------ccceEEEEecccCCHHHHHHHHHHCCCCcEEeccccc
Confidence                                         011122        3899999999999999999999888 68999999999


Q ss_pred             ccCcceecccCC-CCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCccc
Q 010774          419 ESCSGCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFH  496 (501)
Q Consensus       419 E~~~~~~~~~~~-~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~  496 (501)
                      |++.+++..... .....+++|+|+|+++++|+|.+++.+++.|  +.|||||+|++++.|||++++.+++.| .||||+
T Consensus       356 E~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g--~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~  433 (560)
T PLN02574        356 ESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPG--NCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLR  433 (560)
T ss_pred             ccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCC--CCeEEEEECcchhhhhcCChhHhhhhccCCCCcc
Confidence            998765433222 2244589999999999999995566666655  899999999999999999999998887 789999


Q ss_pred             CCCC
Q 010774          497 TEVH  500 (501)
Q Consensus       497 TGD~  500 (501)
                      |||.
T Consensus       434 TGDl  437 (560)
T PLN02574        434 TGDI  437 (560)
T ss_pred             cceE
Confidence            9995

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=3.4e-50  Score=419.17  Aligned_cols=407  Identities=22%  Similarity=0.302  Sum_probs=321.6

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCC
Q 010774           21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (501)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~  100 (501)
                      .++-+||+..+....    .+..++.+.+.++++++|+++|+++.   +..    +.+||.||.++++++|+.|.+.|++
T Consensus         5 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~~   73 (537)
T PLN02246          5 SEEFIFRSKLPDIYI----PNHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGIR   73 (537)
T ss_pred             cceeEecCCCCCCCC----CCCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCCC
Confidence            455677777666422    23468999999999999999999864   321    5799999999999999999999999


Q ss_pred             CCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEe
Q 010774          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF  180 (501)
Q Consensus       101 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~  180 (501)
                      +||+|+++++|+++++++++||+++|++++|++|.++.+++..+++.++++++|++......+......  .. ..++.+
T Consensus        74 ~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~-~~~i~~  150 (537)
T PLN02246         74 QGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DG-VTVVTI  150 (537)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CC-ceEEEe
Confidence            999999999999999999999999999999999999999999999999999999988766554332211  11 134444


Q ss_pred             cCCChhhHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeecc
Q 010774          181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG  260 (501)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~  260 (501)
                      +...           .....+.++........+.....++++++++|||||||.||+|+++|++++.......... ...
T Consensus       151 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~-~~~  218 (537)
T PLN02246        151 DDPP-----------EGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE-NPN  218 (537)
T ss_pred             CCCC-----------CCceeHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcc-ccc
Confidence            3221           1123444544332222223334678999999999999999999999999988776543211 111


Q ss_pred             ccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCC
Q 010774          261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (501)
Q Consensus       261 ~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (501)
                      ..+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++..        
T Consensus       219 ~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--------  290 (537)
T PLN02246        219 LYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSP--------  290 (537)
T ss_pred             cCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCc--------
Confidence            26788999999999999999875 7788999999999876 8999999999999999999999998886521        


Q ss_pred             hhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecc
Q 010774          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGL  417 (501)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~  417 (501)
                                                   .....++        +++|.+++||+++++++.+.+++.+ +..+++.||+
T Consensus       291 -----------------------------~~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~  333 (537)
T PLN02246        291 -----------------------------VVEKYDL--------SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGM  333 (537)
T ss_pred             -----------------------------cccccCc--------cceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccc
Confidence                                         1111122        2799999999999999999999988 6789999999


Q ss_pred             cccCcceecccC----CCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-cc
Q 010774          418 TESCSGCFTSLA----DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD  492 (501)
Q Consensus       418 tE~~~~~~~~~~----~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~d  492 (501)
                      ||++.+++....    .....++++|+|+++++++|+|.+++.+++.+  +.|||+|+|++++.||+++++.+...+ .+
T Consensus       334 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~  411 (537)
T PLN02246        334 TEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRN--QPGEICIRGPQIMKGYLNDPEATANTIDKD  411 (537)
T ss_pred             cccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCC--CceEEEEECCchhccccCCchhhhhcccCC
Confidence            999876543321    11234578999999999999994456666655  899999999999999999999998888 68


Q ss_pred             CcccCCCC
Q 010774          493 GWFHTEVH  500 (501)
Q Consensus       493 gw~~TGD~  500 (501)
                      |||+|||.
T Consensus       412 ~~~~TGD~  419 (537)
T PLN02246        412 GWLHTGDI  419 (537)
T ss_pred             CCeeecce
Confidence            99999995

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.8e-50  Score=418.05  Aligned_cols=392  Identities=23%  Similarity=0.365  Sum_probs=325.4

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      +++.++.+.|++.++.+|+++|+++.   +      +.+||+||.+++.++|+.|.+.|+++||+|+++++|++++++++
T Consensus         2 ~~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~   72 (513)
T PRK07656          2 NEWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA   72 (513)
T ss_pred             CccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            45688999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      +||+++|++++|+++..+.+++..+++.+++++++++........... ........++.........      ......
T Consensus        73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~  145 (513)
T PRK07656         73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDDP------HTEKMK  145 (513)
T ss_pred             HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCccccc------Cccccc
Confidence            999999999999999999999999999999999999987665543322 2233444554443322110      001224


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                      .++++...............+++++++|||||||.||+|.++|.++...+..+...+     .+..++++++.+|++|.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  220 (513)
T PRK07656        146 TFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHVF  220 (513)
T ss_pred             cHHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHHH
Confidence            566666544222334445678999999999999999999999999998888776665     788999999999999999


Q ss_pred             HHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          280 DQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       280 g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      ++.. ++.+++.|+++++.+. ++..+++.++++++|+++++|.+++.+++....                         
T Consensus       221 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-------------------------  275 (513)
T PRK07656        221 GYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDR-------------------------  275 (513)
T ss_pred             HHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCc-------------------------
Confidence            9886 7889999999988765 899999999999999999999999998763111                         


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCC-CeeeeecccccCcceecccCCCCcc--
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADVFNM--  434 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~-~l~~~yG~tE~~~~~~~~~~~~~~~--  434 (501)
                                  ...++        +++|.+++||+++++++.+.+.+.++. .+++.||+||++++++....+....  
T Consensus       276 ------------~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  335 (513)
T PRK07656        276 ------------SAEDL--------SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTV  335 (513)
T ss_pred             ------------CCCCc--------cceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCcccccccc
Confidence                        11112        389999999999999999999999988 8999999999988777655443322  


Q ss_pred             cCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhc-cCcccCCCC
Q 010774          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTEVH  500 (501)
Q Consensus       435 ~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-dgw~~TGD~  500 (501)
                      ++++|+|+++++++|+| +++..++.+  +.|||+++|++++.||+++++.+...+. +|||+|||.
T Consensus       336 ~~~vG~~~~~~~~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl  399 (513)
T PRK07656        336 AGTIGTAIAGVENKIVN-ELGEEVPVG--EVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDL  399 (513)
T ss_pred             CCCccccCCCcEEEEEC-CCCCCCCCC--CceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccce
Confidence            58999999999999999 888877765  8999999999999999999999888884 999999995

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-50  Score=421.33  Aligned_cols=396  Identities=20%  Similarity=0.243  Sum_probs=302.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh
Q 010774           35 LLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE  114 (501)
Q Consensus        35 ~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~  114 (501)
                      +..++..+.++.+.|.++++.+|+++|+++.   ++.    +.+||+||.++++++|+.|.+.|+++||+|+++++|+++
T Consensus         6 ~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e   78 (540)
T PRK05857          6 FQAMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPE   78 (540)
T ss_pred             ccccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHH
Confidence            4445567789999999999999999999865   432    579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhc
Q 010774          115 WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (501)
Q Consensus       115 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  194 (501)
                      +++++|||+++|++++|+++.++.+++.++++.++++.+|++....... ....+....+. ++.++.....        
T Consensus        79 ~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~--------  148 (540)
T PRK05857         79 TYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVT--------  148 (540)
T ss_pred             HHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeeccccc--------
Confidence            9999999999999999999999999999999999999999988653211 11111111111 2222211100        


Q ss_pred             CceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecC
Q 010774          195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (501)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (501)
                      .    ...+..... ..........+++++++|||||||.||||.++|.++.+........ .........+++++..+|
T Consensus       149 ~----~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p  222 (540)
T PRK05857        149 R----ESEHSLDAA-SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKE-GLNWVTWVVGETTYSPLP  222 (540)
T ss_pred             c----ccccccccc-ccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhc-cccccccccCceeeecCC
Confidence            0    000000000 0111233456889999999999999999999999998765433211 011124556789999999


Q ss_pred             hHHHHHHHHHHHHHhcCcEEEEecCCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          275 LAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       275 l~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      ++|.+++...+.+++.|+++++.+.++..+++.++++++|.++++|.+++.+++....                      
T Consensus       223 ~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~----------------------  280 (540)
T PRK05857        223 ATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKS----------------------  280 (540)
T ss_pred             ccccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhcccc----------------------
Confidence            9999998888889999999887666899999999999999999999999988753210                      


Q ss_pred             hhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC---
Q 010774          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV---  431 (501)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~---  431 (501)
                                     ...++        +++|.+++||++++....+ +.+.+++++++.||+||++..+...+.+.   
T Consensus       281 ---------------~~~~~--------~~lr~~~~gG~~~~~~~~~-~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~  336 (540)
T PRK05857        281 ---------------ANATV--------PSLRLVGYGGSRAIAADVR-FIEATGVRTAQVYGLSETGCTALCLPTDDGSI  336 (540)
T ss_pred             ---------------CCCcC--------ccceEEEEcCccCCchhHH-HHHHhCCeeecccCCCcCCceeeecccccccc
Confidence                           01112        3899999999999887775 44567999999999999986544332221   


Q ss_pred             -CcccCcccccccCeEEEEeecCCCCc-cCC---CCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          432 -FNMIGTVGVPMTTVEARLESVPEMGY-DAL---SSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       432 -~~~~~s~G~p~p~~~i~I~d~~~~~~-~~~---~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                       ...++++|+|++|++++|+| +++.. .+.   ..++.|||+|+|++++.|||++++.+.+.|.||||+|||.
T Consensus       337 ~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl  409 (540)
T PRK05857        337 VKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDL  409 (540)
T ss_pred             cccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccce
Confidence             12358999999999999999 77653 221   2247899999999999999999999999899999999995

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-49  Score=417.34  Aligned_cols=397  Identities=21%  Similarity=0.341  Sum_probs=307.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ...|+.+.|++.++.+|+++|+++.    +     +.+||+||.++++++|+.|.+ .|+++||+|+++++|++++++++
T Consensus        22 ~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~   92 (562)
T PRK05677         22 EYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAV   92 (562)
T ss_pred             ccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence            3468999999999999999999864    2     479999999999999999997 69999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCC--h-hhHHHhh----
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS--S-SQKKEAE----  192 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~~~~~----  192 (501)
                      |||+++|++++|++|.++.+++.++++.++++++|++.+....+.+....  ...+.++......  . .......    
T Consensus        93 la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
T PRK05677         93 FGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK--TGVKHVIVTEVADMLPPLKRLLINAVVK  170 (562)
T ss_pred             HHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc--cCcceeEEecccccccchhhhhcccchh
Confidence            99999999999999999999999999999999999987665443322211  1223333221100  0 0000000    


Q ss_pred             -------h-cCceEeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccC
Q 010774          193 -------E-LGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC  263 (501)
Q Consensus       193 -------~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~  263 (501)
                             . .......+.+.+... ..........++++++|+|||||||.||+|.++|.+++.........+.   ...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~~~  247 (562)
T PRK05677        171 HVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG---SNL  247 (562)
T ss_pred             hccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc---cCC
Confidence                   0 001123344444332 1111223345789999999999999999999999999887665443320   012


Q ss_pred             C-CCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCCh
Q 010774          264 S-EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA  339 (501)
Q Consensus       264 ~-~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  339 (501)
                      . ..+.+++.+|++|.+++.. ++..+..|+++++.+.  ++..+++.++++++|+++++|+++..+++.          
T Consensus       248 ~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~----------  317 (562)
T PRK05677        248 NEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNN----------  317 (562)
T ss_pred             CCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhC----------
Confidence            2 3478899999999999875 6677888888777653  889999999999999999999999887651          


Q ss_pred             hHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccc
Q 010774          340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE  419 (501)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE  419 (501)
                                                 ....+.++        +++|.+++||+++++++.+.|++.+++++++.||+||
T Consensus       318 ---------------------------~~~~~~~~--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE  362 (562)
T PRK05677        318 ---------------------------EAFRKLDF--------SALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTE  362 (562)
T ss_pred             ---------------------------cccccCCh--------hhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccc
Confidence                                       11111122        2799999999999999999999988999999999999


Q ss_pred             cCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCC
Q 010774          420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTE  498 (501)
Q Consensus       420 ~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG  498 (501)
                      ++.+++....+ ...++++|+|+|+++++|+| +++.+++.|  +.|||+|+|+.++.||+++++.+++.| .+|||+||
T Consensus       363 ~~~~~~~~~~~-~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG  438 (562)
T PRK05677        363 TSPVVSVNPSQ-AIQVGTIGIPVPSTLCKVID-DDGNELPLG--EVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTG  438 (562)
T ss_pred             cCcceeecCcc-CCCCCccCccCCCCEEEEEC-CCCCCCCCC--CCeEEEEecCccchhhcCCchhhhhccCCCCccccc
Confidence            98776654433 23458899999999999999 888877766  899999999999999999999999888 68999999


Q ss_pred             CC
Q 010774          499 VH  500 (501)
Q Consensus       499 D~  500 (501)
                      |.
T Consensus       439 Dl  440 (562)
T PRK05677        439 DI  440 (562)
T ss_pred             ce
Confidence            95

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.6e-50  Score=414.81  Aligned_cols=394  Identities=25%  Similarity=0.378  Sum_probs=331.3

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....++.++|.++++.+|+++|+.+.   +      +.+||+||+++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus         3 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~   73 (521)
T PRK06187          3 DYPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAY   73 (521)
T ss_pred             cccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            45678999999999999999999876   4      35999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      +||+++|++++|+++.++.+++..+++.++++.++++.+....+.+... ....++.++.+++....      .......
T Consensus        74 la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~  146 (521)
T PRK06187         74 FAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILP-QLPTVRTVIVEGDGPAA------PLAPEVG  146 (521)
T ss_pred             HHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhh-ccCCccEEEEecCcccc------ccccccc
Confidence            9999999999999999999999999999999999999887766544332 23445566665543311      1122345


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                      .+.+++..............+++++++|||||||.||+|.++|.++..........+     .+..+|++++.+|++|.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~  221 (521)
T PRK06187        147 EYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVH  221 (521)
T ss_pred             cHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHh
Confidence            666666554333334455678899999999999999999999999998888766655     788999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhcc
Q 010774          280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (501)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (501)
                      ++...+.++..|+++++.+. ++..+++.++++++|.++++|++++.+++....                          
T Consensus       222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--------------------------  275 (521)
T PRK06187        222 AWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRA--------------------------  275 (521)
T ss_pred             hHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC--------------------------
Confidence            99887779999999998875 899999999999999999999999998763211                          


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCC-----c
Q 010774          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF-----N  433 (501)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~-----~  433 (501)
                                 ...++        +++|.+++||+++++++.+.+.+.+++++++.||+||+++++........     .
T Consensus       276 -----------~~~~~--------~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (521)
T PRK06187        276 -----------YFVDF--------SSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWT  336 (521)
T ss_pred             -----------CccCc--------chhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccc
Confidence                       11122        37999999999999999999999889999999999999887665544332     2


Q ss_pred             ccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       434 ~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ..+++|+|+++++++|+| +++.+++.+.++.|||+++|++++.||+++++.+.+.|.+|||+|||.
T Consensus       337 ~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~  402 (521)
T PRK06187        337 KRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDV  402 (521)
T ss_pred             cCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccce
Confidence            558999999999999999 888888875469999999999999999999999999898999999995

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-49  Score=416.46  Aligned_cols=395  Identities=23%  Similarity=0.334  Sum_probs=316.4

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      +..++.+.|.+.++.+|+++|+++.   +      +.+||+||.+++.++|+.|.+. |+++||+|+++++|++++++++
T Consensus         8 ~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~   78 (546)
T PRK08314          8 PETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAY   78 (546)
T ss_pred             CCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHH
Confidence            3568999999999999999999875   3      4799999999999999999999 9999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhH-------HH--
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-------KE--  190 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~--  190 (501)
                      |||+++|++++|++|..+.+++..+++.++++.++++.+....+.......  .+..++..........       .+  
T Consensus        79 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (546)
T PRK08314         79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWLR  156 (546)
T ss_pred             HHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCcccccc
Confidence            999999999999999999999999999999999999987766554332221  2223332211000000       00  


Q ss_pred             -----hhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCC
Q 010774          191 -----AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE  265 (501)
Q Consensus       191 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~  265 (501)
                           .......+..+++...... .........+++++|+|||||||.||+|.++|.+++..+......+     .+..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~  230 (546)
T PRK08314        157 AEPPLQALAPGGVVAWKEALAAGL-APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NSTP  230 (546)
T ss_pred             cccccccccccccccHHHHhcccC-CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCC
Confidence                 0000112345555554321 1223344678999999999999999999999999999888766555     6788


Q ss_pred             CcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHH
Q 010774          266 EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK  343 (501)
Q Consensus       266 ~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (501)
                      +|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..++..              
T Consensus       231 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~--------------  296 (546)
T PRK08314        231 ESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLAS--------------  296 (546)
T ss_pred             CceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhC--------------
Confidence            999999999999999875 7789999999999875 899999999999999999999999887641              


Q ss_pred             HHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcc
Q 010774          344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG  423 (501)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~  423 (501)
                                             +.....+++        ++|.+++||+++++++.+++.+.++.++++.||+||++..
T Consensus       297 -----------------------~~~~~~~~~--------~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  345 (546)
T PRK08314        297 -----------------------PGLAERDLS--------SLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQ  345 (546)
T ss_pred             -----------------------CCccccCch--------hhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccc
Confidence                                   111222232        7899999999999999999999899999999999999887


Q ss_pred             eecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhc--c--CcccCCC
Q 010774          424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--D--GWFHTEV  499 (501)
Q Consensus       424 ~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~--d--gw~~TGD  499 (501)
                      +.....+.. ..+++|+|++|++++|+|.+++..++.+  +.|||+|+|++++.||+++++.+.+.|.  +  +||+|||
T Consensus       346 ~~~~~~~~~-~~~~~G~~~~g~~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGD  422 (546)
T PRK08314        346 THSNPPDRP-KLQCLGIPTFGVDARVIDPETLEELPPG--EVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGD  422 (546)
T ss_pred             eecCCCcCC-CCCccCcccCCeEEEEEeCCCCcCCCCC--CceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCC
Confidence            665544332 3478999999999999994456666655  8999999999999999999999888772  3  5999999


Q ss_pred             C
Q 010774          500 H  500 (501)
Q Consensus       500 ~  500 (501)
                      .
T Consensus       423 l  423 (546)
T PRK08314        423 L  423 (546)
T ss_pred             E
Confidence            5

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.5e-50  Score=416.07  Aligned_cols=380  Identities=19%  Similarity=0.215  Sum_probs=305.9

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      .++.+.|.++++++|+++|+++.   +      +.+||.||.++++++|++|.++|+++||+|+++++|++++++++|||
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~  113 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA  113 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence            57999999999999999999864   3      37999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHH
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (501)
                      +++|++++|+++.++.+++.++++.++++++|++.+....+...... ......++.+.+...            ...++
T Consensus       114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~  180 (537)
T PRK13382        114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALAD-CPQATRIVAWTDEDH------------DLTVE  180 (537)
T ss_pred             HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhh-ccccceEEEecCCcc------------cccHH
Confidence            99999999999999999999999999999999998765544332211 112223333322110            11333


Q ss_pred             HHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHH
Q 010774          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI  282 (501)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  282 (501)
                      .+.......  ......++.++++|||||||.||||.++|.+++.....+...+     .+..+++++...|++|.+++.
T Consensus       181 ~~~~~~~~~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~~  253 (537)
T PRK13382        181 VLIAAHAGQ--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGFS  253 (537)
T ss_pred             HHhhccCcC--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHHH
Confidence            333322111  1122457789999999999999999999998888777655544     667889999999999999997


Q ss_pred             HHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCC
Q 010774          283 IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP  361 (501)
Q Consensus       283 ~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (501)
                      ..+.++..|+++++... ++..+++.++++++|++.++|++++.+++....                             
T Consensus       254 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----------------------------  304 (537)
T PRK13382        254 QLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAE-----------------------------  304 (537)
T ss_pred             HHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCch-----------------------------
Confidence            78889999999988764 899999999999999999999999998752100                             


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCccccc
Q 010774          362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP  441 (501)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p  441 (501)
                            ..+..++        .++|.+++||+++++++.+.|.+.++..+++.||+||++.+++.........++++|+|
T Consensus       305 ------~~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p  370 (537)
T PRK13382        305 ------VRNRYSG--------RSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRP  370 (537)
T ss_pred             ------hcccCCc--------cceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCcccc
Confidence                  0111112        27999999999999999999999999999999999999987665443333456899999


Q ss_pred             ccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       442 ~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +++++++|+| +++++++.|  +.|||+++|++++.||+  ++.+.. +.+|||+|||.
T Consensus       371 ~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~~~~gY~--~~~~~~-~~~g~~~TGDl  423 (537)
T PRK13382        371 AEGTEIRILD-QDFREVPTG--EVGTIFVRNDTQFDGYT--SGSTKD-FHDGFMASGDV  423 (537)
T ss_pred             CcCcEEEEEC-CCCCCCCCC--CeeEEEEEcCCcccCcc--ccchhh-ccCCCEeeCce
Confidence            9999999999 888877765  89999999999999998  444443 45899999995

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.6e-50  Score=425.52  Aligned_cols=404  Identities=18%  Similarity=0.170  Sum_probs=305.4

Q ss_pred             cccccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCC---CCCccEEeeHHHHHHHHHHHHHHHHhCCCCC
Q 010774           25 VYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDG---KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP  101 (501)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~---~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~  101 (501)
                      .|.+...+...... ....++.++|+++++.+|+++|+++.   +.   ..+..+.+||+||.++++++|++|.+. +++
T Consensus         4 ~~~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~~~~~a~~~~---~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~   78 (631)
T PRK07769          4 AFHNPFDVNGKIRF-PPNTNLVRHVERWAKVRGDKLAYRFL---DFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKP   78 (631)
T ss_pred             ccCCcccccccccc-cccCCHHHHHHHHHHhCCCCeEEEEe---ccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCC
Confidence            34455555444433 34568999999999999999999875   31   123346899999999999999999987 899


Q ss_pred             CCEEEEEcCCchhHHHHHHHHHhcCCEEEEe-cCCCC--HHHHHHHHHhcCceEEEEcCCChhhhhhcCccCC-CCccEE
Q 010774          102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPL-YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTI  177 (501)
Q Consensus       102 gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~v  177 (501)
                      ||+|+++++|++++++++|||+++|++++|+ ++..+  .+++.++++.++++++|++.+....+........ .....+
T Consensus        79 gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~  158 (631)
T PRK07769         79 GDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRV  158 (631)
T ss_pred             CCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceE
Confidence            9999999999999999999999999999999 45554  6789999999999999998876544322211110 011223


Q ss_pred             EEecCCChhhHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeee
Q 010774          178 VSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV  257 (501)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~  257 (501)
                      +.++....                  ..   ..........++++++|+|||||||.||||++||+++......+...+ 
T Consensus       159 ~~~~~~~~------------------~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-  216 (631)
T PRK07769        159 IAVDAVPD------------------EV---GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-  216 (631)
T ss_pred             EEcccccc------------------cc---ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-
Confidence            32221100                  00   001111234568999999999999999999999999998877765555 


Q ss_pred             eccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecC-----CHHHHHHHHhhhcC---cEEEecchHHHHHHHH
Q 010774          258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKP---TMFSGVPRVYDRIYTG  329 (501)
Q Consensus       258 ~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~  329 (501)
                          .+..+|++++.+|++|.+|+..++.+++.|+++++...     ++..+++.++++++   +.+.++|.++..+.+.
T Consensus       217 ----~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~  292 (631)
T PRK07769        217 ----EGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAA  292 (631)
T ss_pred             ----CCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHh
Confidence                67789999999999999999877778888999988742     88899999999986   7899999988766531


Q ss_pred             HHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh--
Q 010774          330 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--  407 (501)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~--  407 (501)
                      ..  .                              .......++++        ++|.+++||+++++++.++|.+.|  
T Consensus       293 ~~--~------------------------------~~~~~~~~~l~--------~lr~~~~gg~~l~~~~~~~~~~~~~~  332 (631)
T PRK07769        293 RG--L------------------------------PKDGEPPLDLS--------NVKGLLNGSEPVSPASMRKFNEAFAP  332 (631)
T ss_pred             hc--c------------------------------chhcccCcchh--------heeeEEeccCCCCHHHHHHHHHHHhh
Confidence            00  0                              00000122333        899999999999999999999987  


Q ss_pred             -C---CCeeeeecccccCcceecccCCCC--------------------------cccCcccccccCeEEEEeecCCCCc
Q 010774          408 -G---APLTQGYGLTESCSGCFTSLADVF--------------------------NMIGTVGVPMTTVEARLESVPEMGY  457 (501)
Q Consensus       408 -~---~~l~~~yG~tE~~~~~~~~~~~~~--------------------------~~~~s~G~p~p~~~i~I~d~~~~~~  457 (501)
                       |   ..+++.||+||++.+++....+..                          ....++|+|+++++++|+|.+++++
T Consensus       333 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~  412 (631)
T PRK07769        333 YGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASE  412 (631)
T ss_pred             cCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcC
Confidence             3   359999999999876654432210                          0125899999999999999445666


Q ss_pred             cCCCCCCCceEEEecCCccccccCCcccchhhhc------------------cCcccCCCCC
Q 010774          458 DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV------------------DGWFHTEVHR  501 (501)
Q Consensus       458 ~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~------------------dgw~~TGD~~  501 (501)
                      ++.|  ++|||||+|++++.|||++++.|++.|.                  +|||+|||.+
T Consensus       413 ~~~g--e~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg  472 (631)
T PRK07769        413 LPDG--QIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYG  472 (631)
T ss_pred             CCCC--CEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccc
Confidence            6655  8999999999999999999999988873                  4899999964

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-49  Score=409.13  Aligned_cols=366  Identities=15%  Similarity=0.175  Sum_probs=302.3

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      +++.+.|+++++.+|+++|+++.   +      ..+||.||.++++++|++|.+.|. +||+|+|+++|++++++++|||
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~   70 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA   70 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence            36889999999999999999865   3      489999999999999999999985 8999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHH
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (501)
                      +++|++++|+++.++.+++.++++.++++.++++......+...       ...++.+.                  .+.
T Consensus        71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~------------------~~~  125 (487)
T PRK07638         71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE-------EGRVIEID------------------EWK  125 (487)
T ss_pred             HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc-------cceEEEeh------------------hhh
Confidence            99999999999999999999999999999999998655443210       01122221                  111


Q ss_pred             HHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHH
Q 010774          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI  282 (501)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  282 (501)
                      +................+++++|+|||||||.||+|+++|.+++..+......+     .+..+|+++...|++|..++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l~  200 (487)
T PRK07638        126 RMIEKYLPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFLY  200 (487)
T ss_pred             hhhhhccccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHHH
Confidence            111111111111222346789999999999999999999999998888766655     778899999999999998877


Q ss_pred             HHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCC
Q 010774          283 IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP  361 (501)
Q Consensus       283 ~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (501)
                      ..+.+++.|+++++.+. ++..+++.++++++|+++++|++++.+.+..                               
T Consensus       201 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------  249 (487)
T PRK07638        201 GAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN-------------------------------  249 (487)
T ss_pred             HHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-------------------------------
Confidence            78889999999998875 9999999999999999999999999987520                               


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCCCcccCcccc
Q 010774          362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGV  440 (501)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~  440 (501)
                           . .            ..+.+.++++|+++++++.+++.+.+ ++.+++.||+||++.++...........+++|+
T Consensus       250 -----~-~------------~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  311 (487)
T PRK07638        250 -----R-V------------IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGR  311 (487)
T ss_pred             -----C-c------------CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCc
Confidence                 0 0            01455678899999999999999988 788999999999998766655444455689999


Q ss_pred             cccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       441 p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      |+++++++|+| +++.+++.|  +.|||+|+|+.++.||+++++.+.+.+.+|||+|||.
T Consensus       312 ~~~~~~~~i~d-~~g~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl  368 (487)
T PRK07638        312 PFHNVQVRICN-EAGEEVQKG--EIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDV  368 (487)
T ss_pred             ccCCcEEEEEC-CCCCCCCCC--CCeEEEEecccceeeecCCHHHHhhhccCCcEecCcc
Confidence            99999999999 888877765  8999999999999999999988877778999999995

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.2e-49  Score=408.08  Aligned_cols=364  Identities=24%  Similarity=0.352  Sum_probs=303.1

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      +.++.+.|++++..+|+++|+++.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA   71 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468999999999999999999865   3      5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|+++..+.+++..+++.++++.+++++...........                              ..+
T Consensus        72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~------------------------------~~~  121 (483)
T PRK03640         72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS------------------------------VKF  121 (483)
T ss_pred             HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc------------------------------ccH
Confidence            99999999999999999999999999999999998765443311100                              012


Q ss_pred             HHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHH
Q 010774          202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (501)
Q Consensus       202 ~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (501)
                      +++.... ...........+++++++|||||||.||+|.++|.++...+......+     ++..+|++++.+|++|.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  196 (483)
T PRK03640        122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG  196 (483)
T ss_pred             HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence            2222221 111122234568899999999999999999999999988776655444     7789999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccC
Q 010774          281 QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (501)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (501)
                      +..++.++..|+++++.+. ++..+++.++++++|++.++|++++.+.+.+.+.                          
T Consensus       197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------  250 (483)
T PRK03640        197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------  250 (483)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence            9888899999999998876 9999999999999999999999999987522110                          


Q ss_pred             CCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceec-ccCCCCcccCcc
Q 010774          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT-SLADVFNMIGTV  438 (501)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~-~~~~~~~~~~s~  438 (501)
                                 .         ...++|.+++||+++++...+.+++. ++++++.||+||++..+.. ........++++
T Consensus       251 -----------~---------~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v  309 (483)
T PRK03640        251 -----------T---------YPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA  309 (483)
T ss_pred             -----------c---------cCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence                       0         01389999999999999999988875 9999999999998765433 333234456899


Q ss_pred             cccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       439 G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      |+|+++++++|.+ ++ .+++.+  +.|||+|+|++++.||+++++.++..|.+|||+|||.
T Consensus       310 G~p~~~~~~~i~~-~~-~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl  367 (483)
T PRK03640        310 GKPLFPCELKIEK-DG-VVVPPF--EEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDI  367 (483)
T ss_pred             ccccCCcEEEEec-CC-CcCCCC--CceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccce
Confidence            9999999999998 54 555544  8999999999999999999999999899999999995

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-49  Score=422.27  Aligned_cols=398  Identities=17%  Similarity=0.184  Sum_probs=304.3

Q ss_pred             HHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHh
Q 010774           45 PWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS  124 (501)
Q Consensus        45 l~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~  124 (501)
                      ..++|+++++.+|+++|+++.   +..++..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus        55 ~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  131 (629)
T PRK10524         55 CHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACAR  131 (629)
T ss_pred             HHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            467788888889999999986   43334457899999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhhhhcCccCCCCccEEEEecCCChhhHHHhhhcC
Q 010774          125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (501)
Q Consensus       125 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (501)
                      +|++++|++|.++.+++..+++.++++++|+++...         +.+.+...........++.+.......    ....
T Consensus       132 ~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~~~  207 (629)
T PRK10524        132 IGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----ARVA  207 (629)
T ss_pred             hCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----Cccc
Confidence            999999999999999999999999999999976421         122222111112234555554321100    0000


Q ss_pred             ceEeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-cceeeeeccccCCCCcEEEEec
Q 010774          196 VSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFSFL  273 (501)
Q Consensus       196 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~~  273 (501)
                      .....++++..... ...+......+++++|+|||||||.||||+++|.+++..... +...+     ++..+|++++..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~  282 (629)
T PRK10524        208 GRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETFFCAS  282 (629)
T ss_pred             CCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEEEEcC
Confidence            01124555543321 112222345688999999999999999999999987654433 32233     677889999999


Q ss_pred             ChHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010774          274 PLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (501)
Q Consensus       274 pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (501)
                      |+.|..+... ++.+++.|+++++...     ++..+++.++++++|+++++|++++.+.+..                 
T Consensus       283 ~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-----------------  345 (629)
T PRK10524        283 DIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQD-----------------  345 (629)
T ss_pred             CCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcC-----------------
Confidence            9999988764 7889999999998753     6889999999999999999999998876520                 


Q ss_pred             HHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecc
Q 010774          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS  427 (501)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~  427 (501)
                                        .....+++++        +||.+++||+++++++.+++.+.+++.+++.||+||++..+...
T Consensus       346 ------------------~~~~~~~~l~--------~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~  399 (629)
T PRK10524        346 ------------------PALLRKHDLS--------SLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAI  399 (629)
T ss_pred             ------------------cccccccChh--------heeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcC
Confidence                              0111223333        89999999999999999999998999999999999998543322


Q ss_pred             cCC---CCcccCcccccccCeEEEEeecC-CCCccCCCCCCCceEEEecC---CccccccCCcccchhhh----ccCccc
Q 010774          428 LAD---VFNMIGTVGVPMTTVEARLESVP-EMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVI----VDGWFH  496 (501)
Q Consensus       428 ~~~---~~~~~~s~G~p~p~~~i~I~d~~-~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~----~dgw~~  496 (501)
                      ...   ....++++|+|+||++++|+| + ++++++.+  +.|||+|+||   +++.|||++++.+.+.+    .+|||+
T Consensus       400 ~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~~~~~g--~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (629)
T PRK10524        400 ARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGEPCGPN--EKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYS  476 (629)
T ss_pred             CCCcccCcCCCCCcccCcCCceEEEEe-CCCCCCCCCC--CcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEE
Confidence            211   123458999999999999999 7 88777655  8999999998   57899999998766544    468999


Q ss_pred             CCCC
Q 010774          497 TEVH  500 (501)
Q Consensus       497 TGD~  500 (501)
                      |||.
T Consensus       477 TGDl  480 (629)
T PRK10524        477 TFDW  480 (629)
T ss_pred             cCCc
Confidence            9996

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=1.4e-49  Score=416.09  Aligned_cols=382  Identities=19%  Similarity=0.213  Sum_probs=294.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCC----CccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKV----GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~----~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~  118 (501)
                      .|+.+.|.+.++++|+++|+++.   +..+    ...+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~   82 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL   82 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence            57889999999999999999875   3321    1234799999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCC--ChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCc
Q 010774          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN--KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (501)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (501)
                      +|||+++|++++|++|.++.+++.++++.++++++|++.+  ....+....   ......++.++...          ..
T Consensus        83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~~  149 (552)
T PRK09274         83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------LW  149 (552)
T ss_pred             HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------cc
Confidence            9999999999999999999999999999999999998752  111111110   01222233322110          00


Q ss_pred             eEeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecCh
Q 010774          197 SCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL  275 (501)
Q Consensus       197 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  275 (501)
                      ....++++.... ..........++++++|+|||||||.||+|.++|.++...+......+     .+..+|+.++.+|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~pl  224 (552)
T PRK09274        150 GGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFPL  224 (552)
T ss_pred             CCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccCH
Confidence            112344443221 112223334678999999999999999999999999999888766655     67888999999999


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEec--------CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010774          276 AHIYDQIIETHCIHKGCSIGFWR--------GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (501)
Q Consensus       276 ~~~~g~~~~~~~l~~G~~~~~~~--------~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (501)
                      +|.+++       ..|+++++..        .++..+++.++++++|+++++|++++.+++.....              
T Consensus       225 ~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------  283 (552)
T PRK09274        225 FALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN--------------  283 (552)
T ss_pred             HHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc--------------
Confidence            886543       4577777653        27899999999999999999999999988642111              


Q ss_pred             HHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh--CCCeeeeecccccCccee
Q 010774          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPLTQGYGLTESCSGCF  425 (501)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~  425 (501)
                                             ..++        +++|.+++||+++++++.+++++.+  |+++++.||+||++++++
T Consensus       284 -----------------------~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  332 (552)
T PRK09274        284 -----------------------GIKL--------PSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISS  332 (552)
T ss_pred             -----------------------CCCC--------chhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEe
Confidence                                   1112        3799999999999999999999998  469999999999987665


Q ss_pred             cccCC---------CCcccCcccccccCeEEEEeecCC---------CCccCCCCCCCceEEEecCCccccccCCcccch
Q 010774          426 TSLAD---------VFNMIGTVGVPMTTVEARLESVPE---------MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE  487 (501)
Q Consensus       426 ~~~~~---------~~~~~~s~G~p~p~~~i~I~d~~~---------~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~  487 (501)
                      .....         ......++|+|+|+++++|+| ++         +++++.  +++|||+|+|++++.|||++++.+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~--g~~Gel~v~g~~~~~GY~~~~~~t~  409 (552)
T PRK09274        333 IESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLAT--GEIGEIVVAGPMVTRSYYNRPEATR  409 (552)
T ss_pred             ecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCC--CCeeEEEEecCcccccccCChHHhh
Confidence            43321         011224799999999999998 43         344444  4899999999999999999999998


Q ss_pred             hhh---ccC--cccCCCC
Q 010774          488 EVI---VDG--WFHTEVH  500 (501)
Q Consensus       488 ~~~---~dg--w~~TGD~  500 (501)
                      ..|   .+|  ||+|||.
T Consensus       410 ~~~~~~~~g~~w~~TGDl  427 (552)
T PRK09274        410 LAKIPDGQGDVWHRMGDL  427 (552)
T ss_pred             hhhcccCCCCcEEEcCCE
Confidence            776   367  9999995

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.4e-51  Score=373.19  Aligned_cols=384  Identities=20%  Similarity=0.243  Sum_probs=328.3

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..+|.++|..+|.++||++|+++.   +      +.|||+||.++++++|..|+++|+++||+|.+-+||..++++++||
T Consensus        27 d~~l~d~L~~~A~~~pdriAv~d~---~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA   97 (542)
T COG1021          27 DRTLTDILTDHAARYPDRIAVIDG---E------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA   97 (542)
T ss_pred             CCcHHHHHHHHHhhcCCceEEecC---c------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence            368999999999999999999964   2      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh----hhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCce
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (501)
                      ++++|+.++.--|.....||.++.+.+.++.+|++....    ..+.+........++.+++.++....           
T Consensus        98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~-----------  166 (542)
T COG1021          98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP-----------  166 (542)
T ss_pred             HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------
Confidence            999999999999999999999999999999999987432    23334444455778888887654321           


Q ss_pred             EeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChH
Q 010774          198 CFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (501)
Q Consensus       198 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (501)
                       ...+..+... ....+..+.+.+++++...+.||||.||.+..||..+..++....+.+     .++.++++++.+|..
T Consensus       167 -~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~A  240 (542)
T COG1021         167 -SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPAA  240 (542)
T ss_pred             -chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEecccc
Confidence             1222233222 333445667788999999999999999999999999999999988888     899999999999999


Q ss_pred             HHHHHHH--HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010774          277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (501)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (501)
                      |.+.+..  .+..++.|+++|+.+. ++......|+++++|+...+|.+...+++..+                      
T Consensus       241 HNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e----------------------  298 (542)
T COG1021         241 HNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAE----------------------  298 (542)
T ss_pred             cCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhh----------------------
Confidence            9999885  8899999999999886 99999999999999999999999999887432                      


Q ss_pred             hhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC-C
Q 010774          354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-F  432 (501)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~-~  432 (501)
                                     .+..+++        |||.+-+||+.+++++.+++...+|+.+.+.|||.|.- ++....++. .
T Consensus       299 ---------------~~~~~Ls--------SLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGL-vnyTRLDDp~E  354 (542)
T COG1021         299 ---------------WERADLS--------SLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGL-VNYTRLDDPPE  354 (542)
T ss_pred             ---------------cccCCch--------heeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhh-hcccccCCchH
Confidence                           2344454        99999999999999999999999999999999999954 344333333 2


Q ss_pred             cccCcccccc-cCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          433 NMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       433 ~~~~s~G~p~-p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      ....+-|+|+ |.-+++|+| +||+++++|  |+|+|.+|||..++|||+.|+-|+++| .||+|+|||-
T Consensus       355 ~i~~TQGrPlsP~DEvrvvD-~dg~pv~pG--E~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~  421 (542)
T COG1021         355 IIIHTQGRPLSPDDEVRVVD-ADGNPVAPG--EVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDL  421 (542)
T ss_pred             heeecCCCcCCCcceeEEec-CCCCCCCCC--CcceeeecCCeeeeeeccCchhhhhccCcCCceecCce
Confidence            3346789998 888999999 999988877  999999999999999999999999999 8999999994

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=6.6e-49  Score=409.56  Aligned_cols=388  Identities=21%  Similarity=0.254  Sum_probs=309.5

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      .++.+.|+++++.+|+++|+++.   +...+..+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~   98 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC   98 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            58999999999999999999864   222223468999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChh----hhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceE
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  198 (501)
                      +++|++++|++|.++.+++.++++.+++++++++.....    ...+...........++..+...             .
T Consensus        99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~  165 (538)
T TIGR03208        99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG-------------D  165 (538)
T ss_pred             HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------C
Confidence            999999999999999999999999999999999876421    11111112223334555543221             1


Q ss_pred             eeHHHHHhcCC----CC----CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEE
Q 010774          199 FSWEEFLQLGT----LD----CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF  270 (501)
Q Consensus       199 ~~~~~~~~~~~----~~----~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (501)
                      ..+++++....    ..    .......++++++++|||||||.||+|+++|++++..+......+     .+..+|+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l  240 (538)
T TIGR03208       166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVIL  240 (538)
T ss_pred             cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeEE
Confidence            12222222110    00    111234568899999999999999999999999999888766655     677899999


Q ss_pred             EecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 010774          271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA  348 (501)
Q Consensus       271 ~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (501)
                      +.+|++|..++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+.+......              
T Consensus       241 ~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--------------  306 (538)
T TIGR03208       241 MASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG--------------  306 (538)
T ss_pred             EeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC--------------
Confidence            9999999998775 7889999999988765 89999999999999999999999988865321110              


Q ss_pred             HHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceeccc
Q 010774          349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSL  428 (501)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~  428 (501)
                                             .++        +++|.+++||+++++++.+++.+.+++.+++.||+||++.+++...
T Consensus       307 -----------------------~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  355 (538)
T TIGR03208       307 -----------------------APV--------PSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEP  355 (538)
T ss_pred             -----------------------CCC--------CcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCc
Confidence                                   011        3799999999999999999999988999999999999987765443


Q ss_pred             CCC-CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          429 ADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       429 ~~~-~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ... .....++|+|+||++++|+| +++.+++.+  +.|||+|+|+.++.||+++++.+.. ..+|||+|||.
T Consensus       356 ~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~  424 (538)
T TIGR03208       356 DDALEKASTTDGRPLPGVEVKVID-ANGAKLSQG--ETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDL  424 (538)
T ss_pred             ccchhhccCcccccCCCCEEEEEC-CCCCCCcCC--CCcEEEEecCcccccccCCcccccc-cCCCceeccce
Confidence            322 12236799999999999999 888777655  8999999999999999999987653 36899999995

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=6.1e-49  Score=410.40  Aligned_cols=404  Identities=20%  Similarity=0.286  Sum_probs=314.5

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCC
Q 010774           21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (501)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~  100 (501)
                      ..+.+|++.+++...    +...|+.+.|.++++.+|+++|+.+.   .+.    +.+||+||.++++++|+.|.+.|++
T Consensus        10 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g~~   78 (546)
T PLN02330         10 DNEHIFRSRYPSVPV----PDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLGLR   78 (546)
T ss_pred             ccceeeccCCCCCCC----CCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhCCC
Confidence            345566666655321    34578999999999999999999864   221    4799999999999999999999999


Q ss_pred             CCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEe
Q 010774          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF  180 (501)
Q Consensus       101 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~  180 (501)
                      +||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+...      .. .++.+
T Consensus        79 ~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~------~~-~~i~~  151 (546)
T PLN02330         79 KGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL------GL-PVIVL  151 (546)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc------CC-cEEEe
Confidence            999999999999999999999999999999999999999999999999999999998876655321      11 23333


Q ss_pred             cCCChhhHHHhhhcCceEeeHHHHHhcCCC---CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeee
Q 010774          181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV  257 (501)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~  257 (501)
                      .....          .....+++++.....   .........+++++++|||||||.||+|.++|.++...+....... 
T Consensus       152 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-  220 (546)
T PLN02330        152 GEEKI----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV-  220 (546)
T ss_pred             cCCCC----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc-
Confidence            32111          112345555543311   1112334568899999999999999999999999987765422111 


Q ss_pred             eccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhh
Q 010774          258 VTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS  335 (501)
Q Consensus       258 ~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (501)
                        .......++.+..+|++|.+++.. ++.++..|+++++... ++..+++.++++++|.+.++|.++..+++.      
T Consensus       221 --~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~------  292 (546)
T PLN02330        221 --GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKN------  292 (546)
T ss_pred             --CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhC------
Confidence              112334578899999999999874 7788999999988765 999999999999999999999999988752      


Q ss_pred             cCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeee
Q 010774          336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQG  414 (501)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~  414 (501)
                                                     +...++++.+      .++|.+++||+++++++.+++.+.| ++++++.
T Consensus       293 -------------------------------~~~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~  335 (546)
T PLN02330        293 -------------------------------PIVEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEA  335 (546)
T ss_pred             -------------------------------ccccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEec
Confidence                                           1111222211      1589999999999999999999998 8999999


Q ss_pred             ecccccCcceecccCCC----CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh
Q 010774          415 YGLTESCSGCFTSLADV----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  490 (501)
Q Consensus       415 yG~tE~~~~~~~~~~~~----~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~  490 (501)
                      ||+||++.+........    ....+++|+|+|+++++|+|.+++..++.|  +.|||+|+|++++.||+++++.+.+.+
T Consensus       336 YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~  413 (546)
T PLN02330        336 YGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKN--TPGELCVRSQCVMQGYYNNKEETDRTI  413 (546)
T ss_pred             ccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCC--CceEEEEecchhhhhhccCccchhhhc
Confidence            99999876543221111    123468999999999999994456666655  899999999999999999999998877


Q ss_pred             -ccCcccCCCC
Q 010774          491 -VDGWFHTEVH  500 (501)
Q Consensus       491 -~dgw~~TGD~  500 (501)
                       .+|||+|||.
T Consensus       414 ~~~g~~~TGD~  424 (546)
T PLN02330        414 DEDGWLHTGDI  424 (546)
T ss_pred             cCCCceecccE
Confidence             6899999995

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=6.2e-49  Score=410.75  Aligned_cols=387  Identities=21%  Similarity=0.284  Sum_probs=310.7

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.++|++.++.+|+++|+++.   ++     +.+||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus        22 ~~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA   93 (547)
T PRK06087         22 DASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLA   93 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            357999999999999999999864   33     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCc
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (501)
                      |+++|++++|++|..+.+++.++++.++++++++++...     +.+... .........++.++.....         .
T Consensus        94 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~  163 (547)
T PRK06087         94 CLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPL-QNQLPQLQQIVGVDKLAPA---------T  163 (547)
T ss_pred             HHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHH-HhhCCCCcEEEEeCCcCCC---------c
Confidence            999999999999999999999999999999999976431     112111 1122334455555432210         0


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChH
Q 010774          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (501)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (501)
                      ....+.++...............+++++|+|||||||.||+|.++|.+++.....+...+     .+..+|++++..|++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~  238 (547)
T PRK06087        164 SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLG  238 (547)
T ss_pred             CccCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchH
Confidence            112344444332211122334578999999999999999999999999988877765555     678899999999999


Q ss_pred             HHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          277 HIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      |.+++.. ++.+++.|+++++... ++..+++.++++++|.++.+|.++..+++.....                     
T Consensus       239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~---------------------  297 (547)
T PRK06087        239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ---------------------  297 (547)
T ss_pred             HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC---------------------
Confidence            9999875 7788999999998875 9999999999999999998888777766422110                     


Q ss_pred             hhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC-Cc
Q 010774          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FN  433 (501)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~-~~  433 (501)
                                      ..++        +++|.+++||+++++++.+.+.+. ++++++.||+||++.+........ ..
T Consensus       298 ----------------~~~~--------~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~  352 (547)
T PRK06087        298 ----------------PADL--------SALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSR  352 (547)
T ss_pred             ----------------CCCC--------CCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhh
Confidence                            0111        389999999999999999988875 999999999999988765543322 22


Q ss_pred             ccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       434 ~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      ..+++|+|+++++++|+| +++.+++.+  +.|||+++|++++.||+++++.+...+ .+|||+|||.
T Consensus       353 ~~~~~G~~~~~~~~~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl  417 (547)
T PRK06087        353 FMHTDGYAAAGVEIKVVD-EARKTLPPG--CEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDL  417 (547)
T ss_pred             cCCcCCccCCCceEEEEc-CCCCCCcCC--CcceEEEecccccccccCCHHHHHHHhCCCCCcCcCce
Confidence            346789999999999999 888877765  899999999999999999999988877 6899999995

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=4.9e-49  Score=409.52  Aligned_cols=385  Identities=18%  Similarity=0.187  Sum_probs=306.8

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.++|+++++.+|+++|+++.    +     +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la   92 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA   92 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            457999999999999999999864    2     4899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhh----hhhcCccCCCCccEEEEecCCChhhHHHhhhcCce
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS----ILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (501)
                      |+++|++++++++..+.+++.++++.++++.++++......    ..+...........++........           
T Consensus        93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  161 (527)
T TIGR02275        93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVE-----------  161 (527)
T ss_pred             HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCc-----------
Confidence            99999999999999999999999999999999998754211    111111112223333333221100           


Q ss_pred             EeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHH
Q 010774          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (501)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~  277 (501)
                       ....+.+.............++++++++|||||||.||+|.+||.++...+......+     .+..+|++++.+|++|
T Consensus       162 -~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~h  235 (527)
T TIGR02275       162 -AELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAAH  235 (527)
T ss_pred             -chhhHHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChHh
Confidence             0111112111111222345678999999999999999999999999998888766655     6788999999999999


Q ss_pred             HHHHHH--HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       278 ~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      .+++..  ++.++..|+++++.+. ++..+++.++++++|+++++|.+++.+++.....                     
T Consensus       236 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------------  294 (527)
T TIGR02275       236 NYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKS---------------------  294 (527)
T ss_pred             hhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCcccc---------------------
Confidence            998874  6788999999988764 8999999999999999999999998887532111                     


Q ss_pred             hhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcc
Q 010774          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (501)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (501)
                                      ..++        +++|.+++||+++++++.+++.+.++.++++.||+||++.............
T Consensus       295 ----------------~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~  350 (527)
T TIGR02275       295 ----------------RYDL--------SSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEII  350 (527)
T ss_pred             ----------------CCCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccc
Confidence                            0111        3899999999999999999999988999999999999654332211112233


Q ss_pred             cCcccccc-cCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          435 IGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       435 ~~s~G~p~-p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      .+++|+|+ ++++++|+| ++++.++.|  +.|||+++|+.++.||+++++.+.+.+ .||||+|||.
T Consensus       351 ~~~~G~~~~~~~~v~i~d-~~g~~~~~g--~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl  415 (527)
T TIGR02275       351 FTTQGRPMSPDDEVRVVD-DHGNPVAPG--ETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDL  415 (527)
T ss_pred             cccCCCCCCCCceEEEEC-CCCCCCCCC--CceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCce
Confidence            47899999 589999999 888877665  899999999999999999999998888 7899999995

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=6.2e-49  Score=408.12  Aligned_cols=393  Identities=21%  Similarity=0.281  Sum_probs=312.2

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.++|++.++++|+++|+++.   +. .+..+.+||.||.++++++|++|.++|+++||+|+++++|+.+++++++|
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~---~~-~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la   81 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFE---SS-GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG   81 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcc---cC-CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            368999999999999999999876   42 34457899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|+++++++|..+.+++.++++.++++.+|++.+..+.+.+.........+.++........        ......+
T Consensus        82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  153 (517)
T PRK08008         82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSSF  153 (517)
T ss_pred             HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccCH
Confidence            99999999999999999999999999999999999887665544433333344455554432110        0123344


Q ss_pred             HHHHhcCCC-CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHH
Q 010774          202 EEFLQLGTL-DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (501)
Q Consensus       202 ~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (501)
                      +++...... .....+...+++++++|||||||.||+|+++|.+++..........     .+..++++++.+|++|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  228 (517)
T PRK08008        154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHIDC  228 (517)
T ss_pred             HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHHH
Confidence            444332211 1112334568899999999999999999999999986543322111     4678899999999999877


Q ss_pred             HHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhcc
Q 010774          281 QII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (501)
Q Consensus       281 ~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (501)
                      ... ++.++..|+++++.+. ++..+++.++++++|++.++|.+++.++....                           
T Consensus       229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------  281 (517)
T PRK08008        229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPP---------------------------  281 (517)
T ss_pred             HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCC---------------------------
Confidence            765 7788999999999875 89999999999999999999999988764100                           


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcc
Q 010774          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV  438 (501)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~  438 (501)
                             .+   ....        ++++.+.++ .+++++..+.|.+.++.++++.||+||+++.++..........+++
T Consensus       282 -------~~---~~~~--------~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  342 (517)
T PRK08008        282 -------SA---NDRQ--------HCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSI  342 (517)
T ss_pred             -------cc---cccc--------ccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCcc
Confidence                   00   0001        257777765 4788999999999889999999999999876655444444445789


Q ss_pred             cccccCeEEEEeecCCCCccCCCCCCCceEEEec---CCccccccCCcccchhhh-ccCcccCCCC
Q 010774          439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRG---NTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       439 G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g---~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      |+|+++++++|+| +++.+++.+  +.|||+++|   ++++.|||++++.+++.| .+|||+|||.
T Consensus       343 G~~~~g~~~~i~d-~~~~~~~~g--~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl  405 (517)
T PRK08008        343 GRPGFCYEAEIRD-DHNRPLPAG--EIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDT  405 (517)
T ss_pred             ccCCCCcEEEEEC-CCCCCCCCC--CcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccce
Confidence            9999999999999 888877765  899999998   689999999999999888 6899999994

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.5e-49  Score=408.04  Aligned_cols=373  Identities=24%  Similarity=0.323  Sum_probs=305.0

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..+.+.|+++++.+|+++|+++.    +     +.+||.||.++++++|++|.+ .|+.+||+|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la   72 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA   72 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            46889999999999999999864    2     589999999999999999985 7999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|+++..+.+++..+++.++++.++++......+..... . .....++.+.                  ++
T Consensus        73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~------------------~~  132 (496)
T PRK06839         73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQK-V-SYVQRVISIT------------------SL  132 (496)
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhh-c-cCcceEEEec------------------ch
Confidence            99999999999999999999999999999999998766544322211 1 1112222222                  12


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                      +++....  .........+++++|+|||||||.||+|.++|.++..........+     ....+|++++.+|++|.+|+
T Consensus       133 ~~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  205 (496)
T PRK06839        133 KEIEDRK--IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGGI  205 (496)
T ss_pred             HhhhccC--CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhhH
Confidence            2222211  1122334568899999999999999999999999877665544444     67789999999999999998


Q ss_pred             HH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccC
Q 010774          282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (501)
Q Consensus       282 ~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (501)
                      .. .+.++..|+++++.+. ++..+++.++++++|++.++|.+++.+++..                             
T Consensus       206 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-----------------------------  256 (496)
T PRK06839        206 GLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCS-----------------------------  256 (496)
T ss_pred             HHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCc-----------------------------
Confidence            75 6788999999988765 9999999999999999999999999987521                             


Q ss_pred             CCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccC-CCCcccCcc
Q 010774          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA-DVFNMIGTV  438 (501)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~-~~~~~~~s~  438 (501)
                              .....++        +++|.+++||+++++++.+.+++. |+++++.||+||++.+++.... +.....+++
T Consensus       257 --------~~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  319 (496)
T PRK06839        257 --------KFETTNL--------QSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSI  319 (496)
T ss_pred             --------ccccCCC--------cccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCC
Confidence                    0111112        389999999999999999999987 9999999999999876543322 223456899


Q ss_pred             cccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       439 G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      |+|+++++++|+| +++..++.|  +.|||+|+|++++.||+++++.+...+.+|||+|||.
T Consensus       320 G~p~~~~~~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl  378 (496)
T PRK06839        320 GKPVLFCDYELID-ENKNKVEVG--EVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDL  378 (496)
T ss_pred             cccCCCceEEEEC-CCcCCCCCC--CceEEEEECCCcchhhcCChHHHHHHHcCCCeeecce
Confidence            9999999999999 888876655  8999999999999999999999988889999999995

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.5e-49  Score=413.31  Aligned_cols=397  Identities=25%  Similarity=0.402  Sum_probs=312.3

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.++|+++++++|+++|+++.   +      +.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++|
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA  101 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFF---G------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA  101 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence            358999999999999999999875   3      3799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhh---HH---------
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ---KK---------  189 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~---------  189 (501)
                      |+++|++++|++|.++.+++.++++.++++++|+++.....+......  .....++.+.......   ..         
T Consensus       102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  179 (573)
T PRK05605        102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPAL  179 (573)
T ss_pred             HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccc
Confidence            999999999999999999999999999999999988765544332211  1222333322110000   00         


Q ss_pred             -----HhhhcCceEeeHHHHHhcCCCC----CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeecc
Q 010774          190 -----EAEELGVSCFSWEEFLQLGTLD----CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG  260 (501)
Q Consensus       190 -----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~  260 (501)
                           ...........++++.......    ........+++++++|||||||.||+|.+||.+++..+......+..  
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--  257 (573)
T PRK05605        180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPG--  257 (573)
T ss_pred             cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccc--
Confidence                 0000112334566665442111    12233457899999999999999999999999998877653322200  


Q ss_pred             ccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCC
Q 010774          261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (501)
Q Consensus       261 ~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (501)
                       ....++++++..|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++|.+.++|.+++.+++....      
T Consensus       258 -~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~------  330 (573)
T PRK05605        258 -LGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEE------  330 (573)
T ss_pred             -cCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccc------
Confidence             1234789999999999999875 6678999999988775 999999999999999999999999998763211      


Q ss_pred             hhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeeccc
Q 010774          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT  418 (501)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~t  418 (501)
                                                     ...++        +++|.+++||+++++++.+++.+.++..+++.||+|
T Consensus       331 -------------------------------~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~T  371 (573)
T PRK05605        331 -------------------------------RGVDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLT  371 (573)
T ss_pred             -------------------------------cCCCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeecccccc
Confidence                                           11112        279999999999999999999998899999999999


Q ss_pred             ccCcceecccCCCCcccCcccccccCeEEEEeecCCC--CccCCCCCCCceEEEecCCccccccCCcccchhhhccCccc
Q 010774          419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM--GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFH  496 (501)
Q Consensus       419 E~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~--~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~  496 (501)
                      |++++++.........++++|+|+||++++|+| +++  ..++.+  +.|||+++|+.++.||+++++.+.+.|.+|||+
T Consensus       372 E~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~  448 (573)
T PRK05605        372 ETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDG--EEGELLVRGPQVFKGYWNRPEETAKSFLDGWFR  448 (573)
T ss_pred             hhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCC--CeeEEEEecCchhhhhcCChhHhhhcccCCCcc
Confidence            999877665544444568999999999999999 664  445444  899999999999999999999999888889999


Q ss_pred             CCCC
Q 010774          497 TEVH  500 (501)
Q Consensus       497 TGD~  500 (501)
                      |||.
T Consensus       449 TGD~  452 (573)
T PRK05605        449 TGDV  452 (573)
T ss_pred             cCCE
Confidence            9995

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-48  Score=409.36  Aligned_cols=405  Identities=19%  Similarity=0.266  Sum_probs=317.1

Q ss_pred             CCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhH
Q 010774           37 ESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEW  115 (501)
Q Consensus        37 ~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~  115 (501)
                      .+.+.+.|+.++|++++..+|+++|+++.   +.   ..+.+||+||.++++++|++|.+ .|+++||+|+++++|++++
T Consensus         4 ~~~~~~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~   77 (576)
T PRK05620          4 TMQDVPLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEH   77 (576)
T ss_pred             hhhcCCCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHH
Confidence            34455678999999999999999999864   22   23689999999999999999986 7999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcC
Q 010774          116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (501)
Q Consensus       116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (501)
                      +++++||+++|+++++++|..+.+++.++++.++++++|++......+.+.... ....+.++.++..............
T Consensus        78 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~  156 (576)
T PRK05620         78 LEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKE-CPCVRAVVFIGPSDADSAAAHMPEG  156 (576)
T ss_pred             HHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhh-CccccEEEEecCcccccchhccccc
Confidence            999999999999999999999999999999999999999998776655443332 3344555555432211100000112


Q ss_pred             ceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcc--eeeeeccccCCCCcEEEEec
Q 010774          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD--QMFVVTGKVCSEEDTYFSFL  273 (501)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~--~~~~~~~~~~~~~d~~l~~~  273 (501)
                      ..+..++++.+............++++++++|||||||.||+|.++|.++........  ..+     .+..++++++.+
T Consensus       157 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~  231 (576)
T PRK05620        157 IKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCCV  231 (576)
T ss_pred             cccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEeC
Confidence            2345677777644322223345678999999999999999999999999876544321  223     677899999999


Q ss_pred             ChHHHHHHHHHHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 010774          274 PLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY  351 (501)
Q Consensus       274 pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (501)
                      |++|.+++...+.++..|+++++...  ++..+++.++++++|.++++|.++..++.......                 
T Consensus       232 pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------  294 (576)
T PRK05620        232 PIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP-----------------  294 (576)
T ss_pred             ChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC-----------------
Confidence            99999998888889999999988753  89999999999999999999999988775321100                 


Q ss_pred             HhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC
Q 010774          352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV  431 (501)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~  431 (501)
                                          .+.        .++|.+++||+++++.+.++|++.+++++++.||+||++.+++......
T Consensus       295 --------------------~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  346 (576)
T PRK05620        295 --------------------PER--------MSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPS  346 (576)
T ss_pred             --------------------ccc--------CceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCC
Confidence                                000        2799999999999999999999988999999999999988765443221


Q ss_pred             -------CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccc----------------hh
Q 010774          432 -------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT----------------EE  488 (501)
Q Consensus       432 -------~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~----------------~~  488 (501)
                             .....++|++.++++++|+| + +..++...++.|||+++|++++.|||++++.+                .+
T Consensus       347 ~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~  424 (576)
T PRK05620        347 GVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAND  424 (576)
T ss_pred             ccccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhc
Confidence                   11235789999999999999 6 66555444578999999999999999999887                22


Q ss_pred             hh-ccCcccCCCC
Q 010774          489 VI-VDGWFHTEVH  500 (501)
Q Consensus       489 ~~-~dgw~~TGD~  500 (501)
                      .+ .+|||+|||.
T Consensus       425 ~~~~~g~~~TGD~  437 (576)
T PRK05620        425 RFTADGWLRTGDV  437 (576)
T ss_pred             ccccCCcEecCce
Confidence            33 5799999995

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=9.8e-49  Score=407.95  Aligned_cols=389  Identities=21%  Similarity=0.239  Sum_probs=313.3

Q ss_pred             CCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHH
Q 010774           37 ESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI  116 (501)
Q Consensus        37 ~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~  116 (501)
                      ..|....++.++|+++++.+|+++|+++.   +      +.+||+||.+++.++|..|.+.|+++|++|+++++|+++++
T Consensus        15 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~   85 (542)
T PRK06155         15 PLPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFL   85 (542)
T ss_pred             cCCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHH
Confidence            34566788999999999999999999865   3      47999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCc
Q 010774          117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (501)
Q Consensus       117 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (501)
                      +++|||+++|++++|+++.++.+++..+++.+++++++++.+....+.+.... ......++.++..... .   .... 
T Consensus        86 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~---~~~~-  159 (542)
T PRK06155         86 DVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPG-DLPLPAVWLLDAPASV-S---VPAG-  159 (542)
T ss_pred             HHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccc-ccCcceEEEecCcccc-c---cccc-
Confidence            99999999999999999999999999999999999999998776665433221 1234455555432210 0   0000 


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChH
Q 010774          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (501)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (501)
                       + ...++... ..........++++++|+|||||||.||+|.++|.++..........+     .+..++++++..|++
T Consensus       160 -~-~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~  231 (542)
T PRK06155        160 -W-STAPLPPL-DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPLF  231 (542)
T ss_pred             -c-chhhhccc-CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCHH
Confidence             0 00111111 111122334568899999999999999999999999988777665555     778999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010774          277 HIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (501)
Q Consensus       277 ~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (501)
                      |..++..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++....                       
T Consensus       232 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~-----------------------  288 (542)
T PRK06155        232 HTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPAR-----------------------  288 (542)
T ss_pred             HHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCc-----------------------
Confidence            99999888899999999998875 899999999999999999999999887652110                       


Q ss_pred             hccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCccc
Q 010774          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI  435 (501)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~  435 (501)
                                    ...++        +++|.++.||  .++.+.+.+++.+++.+++.||+||++.++.....  ...+
T Consensus       289 --------------~~~~~--------~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~~  342 (542)
T PRK06155        289 --------------ESDRA--------HRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQRP  342 (542)
T ss_pred             --------------ccccc--------CceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCCC
Confidence                          00111        3788777665  56889999999899999999999999887665322  2345


Q ss_pred             CcccccccCeEEEEeecCCCCccCCCCCCCceEEEecC---CccccccCCcccchhhhccCcccCCCC
Q 010774          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       436 ~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +++|.|+++++++|+| +++.+++.+  +.|||+++|+   +++.||+++++.+.+.|.+|||+|||.
T Consensus       343 ~~vG~~~~~~~~~i~d-~~~~~~~~g--~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~  407 (542)
T PRK06155        343 GSMGRLAPGFEARVVD-EHDQELPDG--EPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDR  407 (542)
T ss_pred             CCcCccCCCceEEEEC-CCCCCCCCC--CceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccce
Confidence            8899999999999999 888877766  8999999998   699999999999988889999999995

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.9e-49  Score=407.74  Aligned_cols=390  Identities=24%  Similarity=0.316  Sum_probs=318.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ...++.++|.+.++.+|+++|+++.   +      +.+||.||.+++.++|+.|.+.|+++||+|+++++|+++++++++
T Consensus         9 ~~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~   79 (523)
T PRK08316          9 RRQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL   79 (523)
T ss_pred             cCCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3578999999999999999999875   3      489999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEee
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (501)
                      ||+++|++++|+++..+.+++..+++.+++++++++.+....+.+......  ...+........      .........
T Consensus        80 a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~  151 (523)
T PRK08316         80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--VDTLILSLVLGG------REAPGGWLD  151 (523)
T ss_pred             HHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--ccceeeeecccc------cccccchhh
Confidence            999999999999999999999999999999999999887766544332211  111111100000      001112344


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHH
Q 010774          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (501)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (501)
                      ++++...............+++++++|||||||.||+|.++|.+++.........+     .+..++++++.+|++|..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g  226 (523)
T PRK08316        152 FADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQ  226 (523)
T ss_pred             HHHHHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhh
Confidence            55554433222233445678899999999999999999999999998877655555     6888999999999999999


Q ss_pred             HHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhcc
Q 010774          281 QII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (501)
Q Consensus       281 ~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (501)
                      +.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++..                            
T Consensus       227 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------------  278 (523)
T PRK08316        227 LDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHP----------------------------  278 (523)
T ss_pred             HHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCc----------------------------
Confidence            875 5667899999999864 9999999999999999999999998887521                            


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCC-CcccC
Q 010774          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV-FNMIG  436 (501)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~-~~~~~  436 (501)
                               ...+.++        +++|.+++||++++.++.+.+++.+ +..+++.||+||++.+++...... ....+
T Consensus       279 ---------~~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  341 (523)
T PRK08316        279 ---------DFDTRDL--------SSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPG  341 (523)
T ss_pred             ---------ccccCCc--------ccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccC
Confidence                     1111222        2799999999999999999999987 789999999999988766543322 34458


Q ss_pred             cccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       437 s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ++|+|+++++++|+| +++..++.+  +.|||+++|++++.||+++++.+++.|.+|||+|||.
T Consensus       342 ~~G~~~~~~~~~i~~-~~~~~~~~g--~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl  402 (523)
T PRK08316        342 SAGRPVLNVETRVVD-DDGNDVAPG--EVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDL  402 (523)
T ss_pred             CcccCCCCcEEEEEc-CCCCCCCCC--CcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccce
Confidence            999999999999999 888877765  8999999999999999999999999999999999995

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-48  Score=405.64  Aligned_cols=394  Identities=20%  Similarity=0.290  Sum_probs=310.1

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      +.++.+.|+++++.+|++.++.+.   ..  +..+.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus         9 ~~~~~~~l~~~~~~~~~~~~~~~~---~~--~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la   83 (539)
T PRK07008          9 PLLISSLIAHAARHAGDTEIVSRR---VE--GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYG   83 (539)
T ss_pred             CCCHHHHHHHHHhhCCCceEEEee---cc--CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            457999999999999998888653   11  2235799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|++|.++.+++..+++.+++++++++.+..+.+.+... .......++.+.......     .....+..+
T Consensus        84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  157 (539)
T PRK07008         84 VSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHLP-----AGSTPLLCY  157 (539)
T ss_pred             HHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHh-hCCCceEEEEEccCCccc-----cCCcccccH
Confidence            99999999999999999999999999999999999876654433222 223344444443321100     001224556


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHh--hcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                      +++..............++++++++|||||||.||+|++||.+++....  .+...+     ++..+|++++..|++|..
T Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~  232 (539)
T PRK07008        158 ETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHVN  232 (539)
T ss_pred             HHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHhh
Confidence            6665443222223345678899999999999999999999999875432  222233     677899999999999988


Q ss_pred             HHHHHHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          280 DQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      ++...+.++..|+++++.+.  ++..+++.++++++|++.++|.++..+++.....                        
T Consensus       233 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~------------------------  288 (539)
T PRK07008        233 AWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA------------------------  288 (539)
T ss_pred             hHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc------------------------
Confidence            88777888999999998753  8999999999999999999999999887532110                        


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC------
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV------  431 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~------  431 (501)
                                   ..++        +++|.+++||+++++++.+++.+.+++.+++.||+||++..++......      
T Consensus       289 -------------~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~  347 (539)
T PRK07008        289 -------------GLRF--------STLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLP  347 (539)
T ss_pred             -------------CCCc--------ccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCC
Confidence                         1112        3899999999999999999999989999999999999987654332110      


Q ss_pred             ----CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          432 ----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       432 ----~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                          .....++|+|+||++++|+| +++.+++.+.++.|||+++|+.++.||+++++   ..+.+|||+|||.
T Consensus       348 ~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~  416 (539)
T PRK07008        348 LDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDV  416 (539)
T ss_pred             chhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCce
Confidence                11236799999999999999 88887776655689999999999999999883   3456899999995

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4e-49  Score=416.60  Aligned_cols=386  Identities=17%  Similarity=0.190  Sum_probs=293.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCC---CCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGK---VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII  117 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~---~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~  117 (501)
                      ...|+.++|+++++.+|+++|+++.   +..   .+..+.+||+||.++++++|++|.+. +++||+|+++++|++++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~  107 (612)
T PRK12476         32 PGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVA  107 (612)
T ss_pred             ccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHH
Confidence            4578999999999999999999875   321   13346899999999999999999987 9999999999999999999


Q ss_pred             HHHHHHhcCCEEEEe-cCCCC--HHHHHHHHHhcCceEEEEcCCChhhhhhcCccCC-CCccEEEEecCCChhhHHHhhh
Q 010774          118 AMEACNSQAITYVPL-YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEE  193 (501)
Q Consensus       118 ~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~  193 (501)
                      ++|||+++|++++|+ ++.++  .+++.++++.++++++|++.+....+........ .....++.++....        
T Consensus       108 ~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------  179 (612)
T PRK12476        108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD--------  179 (612)
T ss_pred             HHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc--------
Confidence            999999999999999 57766  7899999999999999998766554322211110 01123333322110        


Q ss_pred             cCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeecccc-CCCCcEEEEe
Q 010774          194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSF  272 (501)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~-~~~~d~~l~~  272 (501)
                                   ............++++++|+|||||||.||||+++|+++++.+......+     . +..++++++.
T Consensus       180 -------------~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~~  241 (612)
T PRK12476        180 -------------SAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGVSW  241 (612)
T ss_pred             -------------cccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEEEe
Confidence                         00001111234568999999999999999999999999988776654444     4 5678999999


Q ss_pred             cChHHHHHHHHHHHHHhcCcEEEEecC-----CHHHHHHHHh--hhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHH
Q 010774          273 LPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQ--ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF  345 (501)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (501)
                      +|++|.+|+...+.+++.|+++++...     ++..+++.++  +++++.++.+|+++..++.....             
T Consensus       242 ~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~-------------  308 (612)
T PRK12476        242 LPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGL-------------  308 (612)
T ss_pred             CCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcC-------------
Confidence            999999998865555555555555432     7889999995  58999999999998887642100             


Q ss_pred             HHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh---CC---Ceeeeecccc
Q 010774          346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS---GA---PLTQGYGLTE  419 (501)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~---~~---~l~~~yG~tE  419 (501)
                                          ......++++        ++| +++||+++++++.++|.+.|   |+   .+++.||+||
T Consensus       309 --------------------~~~~~~~~l~--------~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE  359 (612)
T PRK12476        309 --------------------PAEGDDIDLS--------NVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAE  359 (612)
T ss_pred             --------------------hhhhcCcchh--------Hhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhh
Confidence                                0001122333        789 99999999999999999987   43   4999999999


Q ss_pred             cCcceecccCCCC--------------------------cccCcccccccCeEEEEeecCC-CCccCCCCCCCceEEEec
Q 010774          420 SCSGCFTSLADVF--------------------------NMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRG  472 (501)
Q Consensus       420 ~~~~~~~~~~~~~--------------------------~~~~s~G~p~p~~~i~I~d~~~-~~~~~~~~~~~Gei~v~g  472 (501)
                      ++..++....+..                          ...+++|+|+||++++|+| ++ +++++.+  +.||||++|
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~~~~~g--~~GEl~v~g  436 (612)
T PRK12476        360 ATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGAELPDG--EVGEIWLHG  436 (612)
T ss_pred             hheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCcCCCCC--CEEEEEEcC
Confidence            8765543221110                          0125899999999999999 77 8777766  899999999


Q ss_pred             CCccccccCCcccchhhhc-------------------cCcccCCCCC
Q 010774          473 NTLFSGYYKRPDLTEEVIV-------------------DGWFHTEVHR  501 (501)
Q Consensus       473 ~~v~~gY~~~~~~~~~~~~-------------------dgw~~TGD~~  501 (501)
                      ++++.|||++++.|++.|.                   ++||+|||.+
T Consensus       437 ~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg  484 (612)
T PRK12476        437 DNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLG  484 (612)
T ss_pred             CcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccc
Confidence            9999999999999988873                   2599999974

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.5e-49  Score=408.03  Aligned_cols=393  Identities=20%  Similarity=0.254  Sum_probs=302.9

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....++.++|+++++++|+++|+++.   ++.    +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~   85 (534)
T PRK05852         13 DFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVAL   85 (534)
T ss_pred             hhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHH
Confidence            44567999999999999999999875   332    47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      |||+++|++++|++|.++.+++.++++.++++.+|++............   ......+.+.......    +  .....
T Consensus        86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~--~~~~~  156 (534)
T PRK05852         86 LAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGPS----G--GTLSV  156 (534)
T ss_pred             HHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeeccccccc----c--ccccc
Confidence            9999999999999999999999999999999999998753322111000   0011111221111000    0  00000


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                      .+...... ...........++.++++|||||||.||+|.++|.++...+..+...+     .+..+|++++..|++|.+
T Consensus       157 ~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~  230 (534)
T PRK05852        157 HLDAATEP-TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYHGH  230 (534)
T ss_pred             ccccccCC-CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcchhH
Confidence            00000000 000011112246779999999999999999999999998888776655     778899999999999999


Q ss_pred             HHHH-HHHHHhcCcEEEEec---CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010774          280 DQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (501)
Q Consensus       280 g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (501)
                      ++.. ++.+++.|+++++..   .++..+++.++++++|.++++|.+++.+++......                     
T Consensus       231 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------  289 (534)
T PRK05852        231 GLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP---------------------  289 (534)
T ss_pred             HHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc---------------------
Confidence            9885 778899999988854   278899999999999999999999999876321100                     


Q ss_pred             hccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC----
Q 010774          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV----  431 (501)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~----  431 (501)
                                    ...++        +++|.+.++|+++++++.+.+.+.++..+++.||+||++..++....+.    
T Consensus       290 --------------~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~  347 (534)
T PRK05852        290 --------------SGRKP--------AALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQT  347 (534)
T ss_pred             --------------ccccC--------CCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccc
Confidence                          00001        3899999999999999999999999999999999999987665433211    


Q ss_pred             CcccCccccc--ccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          432 FNMIGTVGVP--MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       432 ~~~~~s~G~p--~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      .....++|.+  .+|++++|+| +++++++.+  +.|||+|+|+.++.||+++++.+++.|.+|||+|||.
T Consensus       348 ~~~~~~~g~~g~~~g~~~~i~d-~~g~~~~~g--~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~  415 (534)
T PRK05852        348 ENPVVSTGLVGRSTGAQIRIVG-SDGLPLPAG--AVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDL  415 (534)
T ss_pred             cCcccccccCCCCCCCeEEEEC-CCCCCCCCC--CceEEEEecCcccchhcCCcccchhhhcCCCcccCce
Confidence            1111234444  7999999999 888877765  8999999999999999999999999999999999995

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-48  Score=407.45  Aligned_cols=387  Identities=24%  Similarity=0.286  Sum_probs=317.9

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ..-+|+.+.|.++++.+|+++|+.+.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        14 ~~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~   84 (542)
T PRK07786         14 ARRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV   84 (542)
T ss_pred             ccccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            34578999999999999999999875   3      37999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      +||+++|++++|+++..+.+++..+++.++++.++++......+.. ..........++.+.+...          ....
T Consensus        85 ~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~  153 (542)
T PRK07786         85 LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATA-VRDIVPLLSTVVVAGGSSD----------DSVL  153 (542)
T ss_pred             HHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHH-hhhccCccceEEEecCCCc----------cccc
Confidence            9999999999999999999999999999999999999876654422 2222234455555543211          1124


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccC-CCCcEEEEecChHHH
Q 010774          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC-SEEDTYFSFLPLAHI  278 (501)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~~~  278 (501)
                      .+++++..............+++++++|||||||.||+|.++|.+++..+......+     .. ..++++++..|++|.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~  228 (542)
T PRK07786        154 GYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHI  228 (542)
T ss_pred             CHHHHhhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHH
Confidence            455655443222223344567899999999999999999999999998887655544     33 577899999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEec---CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010774          279 YDQIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (501)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (501)
                      +|+..++.++..|+++++.+   .++..+++.++++++|.++++|.+++.+++.....                      
T Consensus       229 ~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~----------------------  286 (542)
T PRK07786        229 AGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQAR----------------------  286 (542)
T ss_pred             HHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccC----------------------
Confidence            99887889999999999865   28999999999999999999999999987521100                      


Q ss_pred             hccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCC-Cc
Q 010774          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV-FN  433 (501)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~-~~  433 (501)
                                   ...           .++|.+++||+++++++.+.+++.+ +..+++.||+||++.+.+....+. ..
T Consensus       287 -------------~~~-----------~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~  342 (542)
T PRK07786        287 -------------PRD-----------LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIR  342 (542)
T ss_pred             -------------ccC-----------cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccc
Confidence                         000           2689999999999999999999988 788999999999987655433222 23


Q ss_pred             ccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       434 ~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ..+++|+|++++.++|+| +++.+++.+  +.|||+++|+.++.||+++++.+...|.+|||+|||.
T Consensus       343 ~~~~~G~~~~~~~~~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl  406 (542)
T PRK07786        343 KLGSVGKVIPTVAARVVD-ENMNDVPVG--EVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDL  406 (542)
T ss_pred             cCCCccccCCCceEEEEC-CCCCCCcCC--CceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccce
Confidence            457899999999999999 888877665  8999999999999999999999999999999999995

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-49  Score=422.87  Aligned_cols=360  Identities=20%  Similarity=0.274  Sum_probs=292.2

Q ss_pred             CCHHHHHHHHHHh--CCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           43 ESPWQFFCDSAKR--IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        43 ~tl~~~l~~~a~~--~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      .|+.++|.++++.  +|+++|+++.          ..+||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   73 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL   73 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3789999998886  7999999743          259999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEee
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (501)
                      ||+++|++++|++|.++.+++.++++.++++++|++......+...         .++                     .
T Consensus        74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~  123 (705)
T PRK06060         74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E  123 (705)
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence            9999999999999999999999999999999999987544322110         000                     0


Q ss_pred             HHHHHhcC--CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcc-eeeeeccccCCCCcEEEEecChHH
Q 010774          201 WEEFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD-QMFVVTGKVCSEEDTYFSFLPLAH  277 (501)
Q Consensus       201 ~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~-~~~~~~~~~~~~~d~~l~~~pl~~  277 (501)
                      ..+++...  ..+....+..++++++++|||||||.||||.++|.++...+..+. ..+     .+...|++++..|++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  198 (705)
T PRK06060        124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF  198 (705)
T ss_pred             hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence            00111110  011112234568899999999999999999999999988776543 233     6778899999999999


Q ss_pred             HHHHHH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          278 IYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       278 ~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      .+++.. ++.+++.|+++++.+.  ++..+...++++++|+++++|+++..+++....                      
T Consensus       199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------  256 (705)
T PRK06060        199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----------------------  256 (705)
T ss_pred             hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------
Confidence            988764 7789999999999863  788889999999999999999999988752100                      


Q ss_pred             hhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCCCc
Q 010774          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFN  433 (501)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~~  433 (501)
                                       .++        +++|.+++||+++++++.+++.+.+ ++++++.||+||++.++.....+ ..
T Consensus       257 -----------------~~~--------~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~  310 (705)
T PRK06060        257 -----------------DSF--------RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVD-EW  310 (705)
T ss_pred             -----------------ccc--------cceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCC-CC
Confidence                             011        3899999999999999999999988 58999999999998665443322 22


Q ss_pred             ccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       434 ~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ..+++|+|+++++++|+| +++.+++.|  +.|||||+|++++.||||+++.+..  .+|||+|||.
T Consensus       311 ~~~~iG~p~~~~~v~i~d-~~g~~~~~g--~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl  372 (705)
T PRK06060        311 RLGTLGRVLPPYEIRVVA-PDGTTAGPG--VEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDR  372 (705)
T ss_pred             CcCcccccCCCcEEEEEC-CCCCCCCCC--CceEEEEccchhhhhhhCCCccccc--CCCcEECCee
Confidence            357899999999999999 888877665  8999999999999999999986432  4799999995

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.8e-49  Score=408.31  Aligned_cols=386  Identities=20%  Similarity=0.260  Sum_probs=307.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ...|+.++|.+.++++|+++|+++.   +      +.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++
T Consensus         5 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l   75 (528)
T PRK07470          5 RVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF   75 (528)
T ss_pred             cCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3577999999999999999999864   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEee
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (501)
                      ||+++|++++++++..+.+++..+++.++++.++++.+......... ........++.+.....            ...
T Consensus        76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~~  142 (528)
T PRK07470         76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVR-AASPDLTHVVAIGGARA------------GLD  142 (528)
T ss_pred             HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHH-hhCCcCceEEEeCCCcc------------ccc
Confidence            99999999999999999999999999999999999987654432221 11123334444433211            124


Q ss_pred             HHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       201 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                      ++++.... ...........+++++|+|||||||.||+|.++|.++...+......+   .......|+++..+|++|.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~  219 (528)
T PRK07470        143 YEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGA  219 (528)
T ss_pred             HHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHH
Confidence            55555433 112223345678899999999999999999999999876544322111   11456789999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC---CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010774          280 DQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (501)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (501)
                      ++..++ .++.|++.++.+.   ++..+++.++++++|++.++|.+++.+++..                          
T Consensus       220 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------------------  272 (528)
T PRK07470        220 GIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHP--------------------------  272 (528)
T ss_pred             HHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCc--------------------------
Confidence            987544 5677777766642   8899999999999999999999999887521                          


Q ss_pred             ccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCC------
Q 010774          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD------  430 (501)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~------  430 (501)
                                 .....++        +++|.+++||+++++...+++.+.+|..+++.||+||+++.++.....      
T Consensus       273 -----------~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  333 (528)
T PRK07470        273 -----------AVDRYDH--------SSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAED  333 (528)
T ss_pred             -----------CcCCCCC--------cceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccc
Confidence                       1111122        389999999999999999999888899999999999998766543221      


Q ss_pred             -CCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          431 -VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       431 -~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                       .....+++|+|++|++++|+| +++.+++.+  +.|||+++|+.++.||+++++.+++.|.+|||+|||.
T Consensus       334 ~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl  401 (528)
T PRK07470        334 GPDARIGTCGFERTGMEVQIQD-DEGRELPPG--ETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDL  401 (528)
T ss_pred             cccceeeccCcccCCcEEEEEC-CCCCCCCCC--CceEEEEeCCccchhhcCCHHHHHhhhcCCcEeccee
Confidence             122347899999999999999 888877665  8999999999999999999999988889999999995

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.4e-48  Score=407.25  Aligned_cols=399  Identities=22%  Similarity=0.341  Sum_probs=304.4

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      .++.+.|.++++++|+++|+++.    +     +.+||.||.++++++|++|.+. |+++||+|+++++|++++++++||
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la   94 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFG   94 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            58999999999999999999754    2     4799999999999999999985 999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCC--ChhhHH----------
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV--SSSQKK----------  189 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~----------  189 (501)
                      |+++|++++++++.++.+++.++++.++++++++++.............  ....++.....  ....+.          
T Consensus        95 ~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (562)
T PRK12492         95 ALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT--GIEYLIEAKMGDLLPAAKGWLVNTVVDKV  172 (562)
T ss_pred             HHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc--CceEEEeechhhccccccchhcccccccc
Confidence            9999999999999999999999999999999999875544332221110  11111111000  000000          


Q ss_pred             ---HhhhcCceEeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeecc----c
Q 010774          190 ---EAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG----K  261 (501)
Q Consensus       190 ---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~----~  261 (501)
                         ...........++++.... ...........+++++|+|||||||.||+|.++|+++...+......+....    .
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~  252 (562)
T PRK12492        173 KKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQP  252 (562)
T ss_pred             cccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccc
Confidence               0000001223455554332 1111223456688999999999999999999999999877665433221000    0


Q ss_pred             cCCC-CcEEEEecChHHHHHHHH-HHHHHhcCcEEEEec--CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcC
Q 010774          262 VCSE-EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG  337 (501)
Q Consensus       262 ~~~~-~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  337 (501)
                      .... +++++..+|++|.+++.. ++..+..|..+++..  .++..+++.++++++|+++++|.++..+++.        
T Consensus       253 ~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~--------  324 (562)
T PRK12492        253 LMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDH--------  324 (562)
T ss_pred             cccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhC--------
Confidence            0222 457889999999999875 566778888776653  3889999999999999999999999988752        


Q ss_pred             ChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecc
Q 010774          338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGL  417 (501)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~  417 (501)
                                                   +.....++        +++|.+++||+++++++.+.|.+.+++++++.||+
T Consensus       325 -----------------------------~~~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~  367 (562)
T PRK12492        325 -----------------------------PGFKDLDF--------SALKLTNSGGTALVKATAERWEQLTGCTIVEGYGL  367 (562)
T ss_pred             -----------------------------cCcccccc--------cceeEEEeccccCCHHHHHHHHHHhCCceeeccCc
Confidence                                         11112223        28999999999999999999999889999999999


Q ss_pred             cccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCccc
Q 010774          418 TESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFH  496 (501)
Q Consensus       418 tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~  496 (501)
                      ||++.+++..........+++|+|+++++++|+| +++.+++.+  +.|||+|+|+.++.|||++++.+.+.| .+|||+
T Consensus       368 tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~  444 (562)
T PRK12492        368 TETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNELPLG--ERGELCIKGPQVMKGYWQQPEATAEALDAEGWFK  444 (562)
T ss_pred             cccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCCCCCC--CceEEEEeCCccccccccCchhhhhcccCCCcee
Confidence            9998877655444334458899999999999999 888877665  899999999999999999999998888 689999


Q ss_pred             CCCC
Q 010774          497 TEVH  500 (501)
Q Consensus       497 TGD~  500 (501)
                      |||.
T Consensus       445 TGD~  448 (562)
T PRK12492        445 TGDI  448 (562)
T ss_pred             cCcE
Confidence            9995

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=3.2e-48  Score=401.58  Aligned_cols=379  Identities=22%  Similarity=0.357  Sum_probs=306.5

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      .+|.++|..++ .+|+++|+.+.   ++     +.+||.||.++++++|++|.++|+++||+|+++++|+++++++++||
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~   73 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLAT   73 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            67999999999 99999999764   33     58999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHH
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (501)
                      +++|++++|+++..+.+++..+++.+++++++++......+......  .....++.++....             ..+.
T Consensus        74 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~~  138 (504)
T PRK07514         74 LRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSLL  138 (504)
T ss_pred             HHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccHH
Confidence            99999999999999999999999999999999998766554332221  11222333332111             0111


Q ss_pred             HHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHH
Q 010774          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI  282 (501)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  282 (501)
                      +................+++++|+|||||||.||+|.++|.++...+......+     ....+|++++.+|++|..++.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~~  213 (504)
T PRK07514        139 EAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHGLF  213 (504)
T ss_pred             HhhhhcCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHHHH
Confidence            221111112222344578899999999999999999999999999887765555     678899999999999999987


Q ss_pred             H-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCC
Q 010774          283 I-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM  360 (501)
Q Consensus       283 ~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (501)
                      . ++.+++.|+++++.+. ++..+++.+  .++|++.++|.++..+++.                               
T Consensus       214 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~-------------------------------  260 (504)
T PRK07514        214 VATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQE-------------------------------  260 (504)
T ss_pred             HHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcC-------------------------------
Confidence            5 7789999999998876 899999998  4799999999999888641                               


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccc
Q 010774          361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGV  440 (501)
Q Consensus       361 ~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~  440 (501)
                            +.....++        +++|.+++||+++++++.+.|++.++.++++.||+||++.+++... ......+++|.
T Consensus       261 ------~~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~G~  325 (504)
T PRK07514        261 ------PRLTREAA--------AHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPY-DGERRAGTVGF  325 (504)
T ss_pred             ------CCCCcccc--------cceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCc-cccccCccccc
Confidence                  11111222        3899999999999999999999999999999999999886554322 22333478999


Q ss_pred             cccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       441 p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      |+++++++|+|++++.+++.+  +.|||+|+|++++.||+++++.+++.| .+|||+|||.
T Consensus       326 ~~~~~~v~i~d~~~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl  384 (504)
T PRK07514        326 PLPGVSLRVTDPETGAELPPG--EIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDL  384 (504)
T ss_pred             CCCCcEEEEEECCCCCCCCCC--CceEEEEecCCccccccCCchhhhhhcccCCCeeecce
Confidence            999999999995555555544  899999999999999999999999888 5899999996

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.1e-48  Score=406.74  Aligned_cols=391  Identities=24%  Similarity=0.390  Sum_probs=311.7

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....++.+.|.+.++.+|+++|+++.   +++    +.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~   85 (559)
T PRK08315         13 LLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQ   85 (559)
T ss_pred             hhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            34468999999999999999999875   443    57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhh-----hhhcCcc------------CCCCccEEEEecC
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS-----ILSCLPR------------CCLYLKTIVSFAN  182 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~-----~~~~~~~------------~~~~~~~v~~~~~  182 (501)
                      |||+++|++++|++|..+.+++..+++.++++.++++......     +.+...+            .......++.++.
T Consensus        86 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (559)
T PRK08315         86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD  165 (559)
T ss_pred             HHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc
Confidence            9999999999999999999999999999999999998754321     1111000            0112233333332


Q ss_pred             CChhhHHHhhhcCceEeeHHHHHhcCC------CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceee
Q 010774          183 VSSSQKKEAEELGVSCFSWEEFLQLGT------LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  256 (501)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~  256 (501)
                      ..          ......++++.....      ..........+++++++|||||||.||+|.++|.+++..+......+
T Consensus       166 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~  235 (559)
T PRK08315        166 EK----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM  235 (559)
T ss_pred             cC----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc
Confidence            11          011233444433220      01112234567899999999999999999999999998888766655


Q ss_pred             eeccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHH
Q 010774          257 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  333 (501)
Q Consensus       257 ~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  333 (501)
                           .+..+|+++...|++|.+++.. ++.++..|+++++...  ++..+++.++++++|+++++|.++..++...   
T Consensus       236 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~---  307 (559)
T PRK08315        236 -----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHP---  307 (559)
T ss_pred             -----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCc---
Confidence                 7889999999999999999875 7889999999986543  8999999999999999999999998876421   


Q ss_pred             hhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCC-ee
Q 010774          334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LT  412 (501)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~-l~  412 (501)
                                                        ....+++        +++|.+++||+++++++.+.+.+.++.. ++
T Consensus       308 ----------------------------------~~~~~~~--------~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~  345 (559)
T PRK08315        308 ----------------------------------DFARFDL--------SSLRTGIMAGSPCPIEVMKRVIDKMHMSEVT  345 (559)
T ss_pred             ----------------------------------ccCCCCc--------hhhheeEecCCCCCHHHHHHHHHHcCCccee
Confidence                                              1111122        2799999999999999999999988764 99


Q ss_pred             eeecccccCcceecccCCC--CcccCcccccccCeEEEEeecCC-CCccCCCCCCCceEEEecCCccccccCCcccchhh
Q 010774          413 QGYGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV  489 (501)
Q Consensus       413 ~~yG~tE~~~~~~~~~~~~--~~~~~s~G~p~p~~~i~I~d~~~-~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~  489 (501)
                      +.||+||++.+++......  .....++|+|+||++++|+| ++ ++.++.+  +.|||+|+|++++.||+++++.+...
T Consensus       346 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~~g--~~GEl~v~g~~~~~gy~~~~~~~~~~  422 (559)
T PRK08315        346 IAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETGETVPRG--EQGELCTRGYSVMKGYWNDPEKTAEA  422 (559)
T ss_pred             EEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccCCcCCCC--CceEEEEECchhhhhhcCChhHHhhc
Confidence            9999999988766543322  23457899999999999999 66 7777665  89999999999999999999999888


Q ss_pred             h-ccCcccCCCC
Q 010774          490 I-VDGWFHTEVH  500 (501)
Q Consensus       490 ~-~dgw~~TGD~  500 (501)
                      + .++||+|||.
T Consensus       423 ~~~~~~~~TGD~  434 (559)
T PRK08315        423 IDADGWMHTGDL  434 (559)
T ss_pred             CCCCCCEEccce
Confidence            8 7899999995

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.7e-48  Score=413.56  Aligned_cols=398  Identities=19%  Similarity=0.195  Sum_probs=301.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....|+.+.+..+  .+|+++|+++.   +. .+..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus        83 ~~~~n~~~~~~~~--~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~  156 (655)
T PRK03584         83 GARLNYAENLLRH--RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAM  156 (655)
T ss_pred             CCEeeHHHHhhcc--CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            3444666666543  58999999986   43 344578999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhhhhcCccCCCCccEEEEecCCChhhHHH
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKE  190 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  190 (501)
                      |||+++|++++|++|.++.+++.++++.++++++|+++...         ..+.+.. ..+..+..++.+.......   
T Consensus       157 lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~---  232 (655)
T PRK03584        157 LATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELR-AALPSLEHVVVVPYLGPAA---  232 (655)
T ss_pred             HHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEecCCCcc---
Confidence            99999999999999999999999999999999999987532         1111111 1223344555554321100   


Q ss_pred             hhhcCceEeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH-HhhcceeeeeccccCCCCcE
Q 010774          191 AEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEEDT  268 (501)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~  268 (501)
                      ..........+++++... ...........+++++|+|||||||.||||+++|.+++.. ...+...+     .+..+|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  307 (655)
T PRK03584        233 AAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGPGDR  307 (655)
T ss_pred             cccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCCCCE
Confidence            000111234566665422 1222234456789999999999999999999999987644 44444444     6788999


Q ss_pred             EEEecChHHHHHHHHHHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHH
Q 010774          269 YFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK  343 (501)
Q Consensus       269 ~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (501)
                      +++..++.|..+. .++.+|+.|+++++...     ++..+++.++++++|++.++|++++.+.+.-             
T Consensus       308 ~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-------------  373 (655)
T PRK03584        308 FFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAG-------------  373 (655)
T ss_pred             EEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcC-------------
Confidence            9999999987543 46689999999999752     7899999999999999999999998876410             


Q ss_pred             HHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh--CCCeeeeecccccC
Q 010774          344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPLTQGYGLTESC  421 (501)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~--~~~l~~~yG~tE~~  421 (501)
                                            .......+++        +||.+++||+++++++.+++.+.+  ++.+++.||+||++
T Consensus       374 ----------------------~~~~~~~~l~--------sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~  423 (655)
T PRK03584        374 ----------------------LVPGETHDLS--------ALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDIC  423 (655)
T ss_pred             ----------------------CCccccCChh--------heEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhh
Confidence                                  0001122333        899999999999999999999987  47899999999987


Q ss_pred             cceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecC--CccccccCCcccch--hhh---ccCc
Q 010774          422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTE--EVI---VDGW  494 (501)
Q Consensus       422 ~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~--~~~---~dgw  494 (501)
                      +............++++|.|++|++++|+| +++.++ .  ++.|||+|+|+  +++.|||++++.++  ..+   .+||
T Consensus       424 ~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~-~--g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~  499 (655)
T PRK03584        424 SCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV-V--GEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGV  499 (655)
T ss_pred             cccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC-C--CCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCE
Confidence            654433332334558999999999999999 888766 3  48999999996  79999999998653  222   2689


Q ss_pred             ccCCCC
Q 010774          495 FHTEVH  500 (501)
Q Consensus       495 ~~TGD~  500 (501)
                      |+|||.
T Consensus       500 ~~TGDl  505 (655)
T PRK03584        500 WRHGDW  505 (655)
T ss_pred             eecCCe
Confidence            999995

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=4e-48  Score=402.02  Aligned_cols=387  Identities=24%  Similarity=0.330  Sum_probs=315.5

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010774           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (501)
Q Consensus        44 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~  123 (501)
                      ++.++|.+.++.+|+++|+.+.   +      +.+||+||.+++.++|++|.+.|+.+||+|+++++|++++++++|||+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~   71 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA   71 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            3788999999999999999875   3      479999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHH
Q 010774          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (501)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (501)
                      ++|++++|+++.++.+++..+++.++++++|++.+....+....... .....++.++......     ........+++
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  145 (515)
T TIGR03098        72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGC-HDLRTLILVGEPAHAS-----EGGGESPSWPK  145 (515)
T ss_pred             hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcc-cccceEEEecCccccc-----CCccccccHHH
Confidence            99999999999999999999999999999999887666554433322 3445555555332110     01122334555


Q ss_pred             HHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHH
Q 010774          204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII  283 (501)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  283 (501)
                      +...... ........+++++++|||||||.||+|.+||.++...+......+     .+..+|++++.+|++|.+++..
T Consensus       146 ~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~  219 (515)
T TIGR03098       146 LLALGDA-DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFNQ  219 (515)
T ss_pred             hhccccc-cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHHH
Confidence            5443221 122334567899999999999999999999999998887766555     6788999999999999999988


Q ss_pred             HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCC
Q 010774          284 ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ  362 (501)
Q Consensus       284 ~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (501)
                      ++.++..|+++++.+. ++..+++.++++++|+++++|.++..+.+..                                
T Consensus       220 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------------------------  267 (515)
T TIGR03098       220 LTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLD--------------------------------  267 (515)
T ss_pred             HHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcc--------------------------------
Confidence            8999999999998875 8999999999999999999999998876410                                


Q ss_pred             CCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCCCcccCccccc
Q 010774          363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP  441 (501)
Q Consensus       363 ~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p  441 (501)
                            ....++        +++|.+++||+++++++.+.+++.+ +..+++.||+||++.++..........++++|+|
T Consensus       268 ------~~~~~~--------~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~  333 (515)
T TIGR03098       268 ------WPESAA--------PSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKA  333 (515)
T ss_pred             ------cCCCCc--------cceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCccee
Confidence                  000011        3899999999999999999999988 6789999999999876555443334456899999


Q ss_pred             ccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhc------------cCcccCCCC
Q 010774          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV------------DGWFHTEVH  500 (501)
Q Consensus       442 ~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~------------dgw~~TGD~  500 (501)
                      +++++++|+| +++..++.+  +.|||+++|+.++.|||++++.+.+.|.            ++||+|||.
T Consensus       334 ~~~~~~~i~~-~~~~~~~~~--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~  401 (515)
T TIGR03098       334 IPNAEVLVLR-EDGSECAPG--EEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDT  401 (515)
T ss_pred             cCCCEEEEEC-CCCCCCCCC--CceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccce
Confidence            9999999999 888777654  8999999999999999999988876652            348999995

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-48  Score=403.62  Aligned_cols=385  Identities=22%  Similarity=0.255  Sum_probs=310.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....|+.++|.++++++|+++|+++.   +      +.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~   79 (524)
T PRK06188          9 HSGATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAI   79 (524)
T ss_pred             cCCccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            34568999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCC-ChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceE
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN-KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  198 (501)
                      +||+++|++++|++|..+.+++..+++.++++.++++.. ....... .......+..++.+.......           
T Consensus        80 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------  147 (524)
T PRK06188         80 GAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALA-LLARVPSLKHVLTLGPVPDGV-----------  147 (524)
T ss_pred             HHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHH-HhhhcCCceEEEEeCCccchh-----------
Confidence            999999999999999999999999999999999999876 3332222 122223334454444322100           


Q ss_pred             eeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHH
Q 010774          199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (501)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (501)
                       ...+...............++++++|+|||||||.||+|.++|.++...+......+     .+..++++++.+|++|.
T Consensus       148 -~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~  221 (524)
T PRK06188        148 -DLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHA  221 (524)
T ss_pred             -hHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhh
Confidence             011111111111111122345699999999999999999999999999888766665     77889999999999998


Q ss_pred             HHHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          279 YDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      +++. ++.+++.|+++++.+. ++..+++.++++++|+++++|.++..+++..                           
T Consensus       222 ~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~---------------------------  273 (524)
T PRK06188        222 GGAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHP---------------------------  273 (524)
T ss_pred             hhHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCc---------------------------
Confidence            8864 5678999999999876 8999999999999999999999999987621                           


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC-----C
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-----F  432 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~-----~  432 (501)
                                .....++        +++|.+++||++++++..+.+.+.++..+++.||+||++.+++......     .
T Consensus       274 ----------~~~~~~l--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  335 (524)
T PRK06188        274 ----------DLRTRDL--------SSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDP  335 (524)
T ss_pred             ----------CccCCCC--------cceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhcccccc
Confidence                      1111122        3899999999999999999888888999999999999976655433221     2


Q ss_pred             cccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       433 ~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ....++|+|+||++++|+| +++++++.+  +.|||+++|+.++.||+++++.+...+.+|||+|||.
T Consensus       336 ~~~~~~G~p~~g~~v~i~~-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl  400 (524)
T PRK06188        336 KRLTSCGRPTPGLRVALLD-EDGREVAQG--EVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDV  400 (524)
T ss_pred             ccCCccccccCCcEEEEEc-CCCCCCCCC--CeeEEEEECcchhhhhcCChHHhhhhhcCCceeecce
Confidence            3457899999999999999 888877655  8999999999999999999999998889999999994

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.3e-48  Score=398.68  Aligned_cols=376  Identities=22%  Similarity=0.291  Sum_probs=305.0

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      +.++.+.|.++++.+|+++|+++.   +      +.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA   71 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            467899999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|+++..+.+++.++++.++++.++++.+...... .       ....+.++.....             .+
T Consensus        72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~-------~~~~~~~~~~~~~-------------~~  130 (497)
T PRK06145         72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-L-------ETPKIVIDAAAQA-------------DS  130 (497)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-c-------ccceEEecCcccc-------------hh
Confidence            9999999999999999999999999999999999876543321 0       0112222211100             01


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                      ..+..............++++++++|||||||.||+|.++|.++..........+     .+..+++++...|++|.+++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~  205 (497)
T PRK06145        131 RRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGAF  205 (497)
T ss_pred             HHHhccCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhHH
Confidence            1111111111112234568899999999999999999999999987665544444     67889999999999999998


Q ss_pred             HH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccC
Q 010774          282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (501)
Q Consensus       282 ~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (501)
                      .. .+.+++.|+++++.+. ++..+++.++++++|.+.++|+++..++...                             
T Consensus       206 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~-----------------------------  256 (497)
T PRK06145        206 DLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVP-----------------------------  256 (497)
T ss_pred             HHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCC-----------------------------
Confidence            75 5778999999988775 9999999999999999999999999887521                             


Q ss_pred             CCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCC-CCcccCc
Q 010774          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLAD-VFNMIGT  437 (501)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~-~~~~~~s  437 (501)
                              .....++        +++|.+++||+++++++.+.+.+.| +..+++.||+||++..++..... .....++
T Consensus       257 --------~~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  320 (497)
T PRK06145        257 --------DRDRFDL--------DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGS  320 (497)
T ss_pred             --------Ccccccc--------ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCC
Confidence                    1111222        2789999999999999999999988 67899999999999866554332 2234578


Q ss_pred             ccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       438 ~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +|+|+++++++|+| +++..++.+  +.|||+++|++++.||+++++.+.+.|.+|||+|||.
T Consensus       321 ~G~~~~~~~~~i~~-~~~~~~~~~--~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl  380 (497)
T PRK06145        321 TGRALAHVEIRIAD-GAGRWLPPN--MKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDV  380 (497)
T ss_pred             cccCCCCceEEEEC-CCCCCCCCC--CceEEEEECcchhhhhcCChHHHHHHHhCCCeeccce
Confidence            99999999999999 888777665  8999999999999999999999999898999999995

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.9e-48  Score=403.58  Aligned_cols=402  Identities=23%  Similarity=0.343  Sum_probs=308.8

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      +...++.+.|.++++.+|+++|+++.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        20 ~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~   90 (557)
T PRK07059         20 SQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAI   90 (557)
T ss_pred             CCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            44568999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhH-----------
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-----------  188 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------  188 (501)
                      |||+++|++++|++|.++.+++.++++.++++++|+++.....+......  .....++..........           
T Consensus        91 la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (557)
T PRK07059         91 AAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVRR  168 (557)
T ss_pred             HHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEeccccccccccccccccccc
Confidence            99999999999999999999999999999999999987665443322211  12222222211000000           


Q ss_pred             --H-HhhhcCceEeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeec--ccc
Q 010774          189 --K-EAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT--GKV  262 (501)
Q Consensus       189 --~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~--~~~  262 (501)
                        . ...........+++++... ..........++++++|+|||||||.||+|.++|.+++..+......+...  ...
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~  248 (557)
T PRK07059        169 VKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKP  248 (557)
T ss_pred             ccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccC
Confidence              0 0000011223455554433 112223345678999999999999999999999999987654432211100  001


Q ss_pred             CCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCCh
Q 010774          263 CSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA  339 (501)
Q Consensus       263 ~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  339 (501)
                      ......+++.+|++|.+++.. .+.++..|++.++.+.  ++..+++.++++++|.+.++|.++..+.+.          
T Consensus       249 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~----------  318 (557)
T PRK07059        249 RPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNN----------  318 (557)
T ss_pred             CCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcC----------
Confidence            123457788899999988764 6678888888777653  889999999999999999999999988752          


Q ss_pred             hHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccc
Q 010774          340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE  419 (501)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE  419 (501)
                                                 ....+.+++        ++|.++.||+++++.+.++|.+.+++++++.||+||
T Consensus       319 ---------------------------~~~~~~~~~--------~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE  363 (557)
T PRK07059        319 ---------------------------PDFDKLDFS--------KLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSE  363 (557)
T ss_pred             ---------------------------cCcCcCCch--------hheEEEeccccCCHHHHHHHHHHhCCCeeecccccc
Confidence                                       111222233        789999999999999999999989999999999999


Q ss_pred             cCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCC
Q 010774          420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTE  498 (501)
Q Consensus       420 ~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG  498 (501)
                      ++.+++....+....++++|+|+++++++|+| +++..++.+  +.|||+++|+.++.||+++++.+.+.+ .+|||+||
T Consensus       364 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG  440 (557)
T PRK07059        364 TSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLG--EPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG  440 (557)
T ss_pred             ccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCCCC--CceEEEEeCCccchhhhcCHHHHhhhcccCCceecC
Confidence            98876655443334458999999999999999 888877766  899999999999999999999998877 78999999


Q ss_pred             CC
Q 010774          499 VH  500 (501)
Q Consensus       499 D~  500 (501)
                      |.
T Consensus       441 Dl  442 (557)
T PRK07059        441 DV  442 (557)
T ss_pred             cE
Confidence            94

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.3e-48  Score=440.48  Aligned_cols=394  Identities=21%  Similarity=0.292  Sum_probs=313.2

Q ss_pred             CCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHH
Q 010774           38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII  117 (501)
Q Consensus        38 ~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~  117 (501)
                      .+....++.+.|.++++++|+++|+++.   .+     +.+||+||.++++++|++|.+. +++||+|+++++|++++++
T Consensus       610 ~~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~~-~~~g~~V~i~~~n~~~~~~  680 (1146)
T PRK08633        610 RKEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKRE-LKDEENVGILLPPSVAGAL  680 (1146)
T ss_pred             hcCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHHh-CCCCCeEEEECCCchHHHH
Confidence            3456678999999999999999999854   33     4799999999999999999874 8999999999999999999


Q ss_pred             HHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCc-cCCCCccEEEEecCCChhhHHHhhhcCc
Q 010774          118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP-RCCLYLKTIVSFANVSSSQKKEAEELGV  196 (501)
Q Consensus       118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (501)
                      +++||+++|++++|++|..+.+++.++++.++++.++++++..+.+.+... ........++..++......        
T Consensus       681 ~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  752 (1146)
T PRK08633        681 ANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS--------  752 (1146)
T ss_pred             HHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc--------
Confidence            999999999999999999999999999999999999998765554432110 01112233444332111000        


Q ss_pred             eEeeHHHHHhcCCCC------CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEE
Q 010774          197 SCFSWEEFLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF  270 (501)
Q Consensus       197 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (501)
                      ....+++.......+      .......++++++++|||||||.||+|.+||+++..........+     ....+|+++
T Consensus       753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l  827 (1146)
T PRK08633        753 KVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVIL  827 (1146)
T ss_pred             hhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence            001111111111000      001334578999999999999999999999999999888776665     678899999


Q ss_pred             EecChHHHHHHHH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010774          271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (501)
Q Consensus       271 ~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (501)
                      +.+|++|.+++.. .+.++..|+++++.+.  ++..+++.++++++|++.++|++++.+++.                  
T Consensus       828 ~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------  889 (1146)
T PRK08633        828 SSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRN------------------  889 (1146)
T ss_pred             EcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhc------------------
Confidence            9999999999986 7889999999988764  899999999999999999999999988752                  


Q ss_pred             HHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecc
Q 010774          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS  427 (501)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~  427 (501)
                                         +..++.++        +++|.+++||+++++++.+++++.+|+++++.||+||++++++..
T Consensus       890 -------------------~~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~  942 (1146)
T PRK08633        890 -------------------KKLHPLMF--------ASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVN  942 (1146)
T ss_pred             -------------------cccCcccC--------CCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEe
Confidence                               11222223        389999999999999999999999999999999999998876654


Q ss_pred             cCCC---------CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhcc----Cc
Q 010774          428 LADV---------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD----GW  494 (501)
Q Consensus       428 ~~~~---------~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~d----gw  494 (501)
                      ..+.         ..+++++|+|+||++++|+|.+++++++.+  +.|||+++|++++.||+++++.+++.+.+    ||
T Consensus       943 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~ 1020 (1146)
T PRK08633        943 LPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPG--EDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGW 1020 (1146)
T ss_pred             cCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCC--CceEEEEcCCCccccccCCccchHHHhhcCCCCCe
Confidence            3221         124578999999999999994456666655  89999999999999999999999988866    99


Q ss_pred             ccCCCC
Q 010774          495 FHTEVH  500 (501)
Q Consensus       495 ~~TGD~  500 (501)
                      |+|||.
T Consensus      1021 ~~TGD~ 1026 (1146)
T PRK08633       1021 YVTGDK 1026 (1146)
T ss_pred             EECCCE
Confidence            999995

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=6.3e-48  Score=410.92  Aligned_cols=402  Identities=15%  Similarity=0.142  Sum_probs=297.9

Q ss_pred             CCCCCCCHHH-HHHHHHHhCCCCcceEEeeccCCC--CCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh
Q 010774           38 SPAGLESPWQ-FFCDSAKRIPNNQMLGGRKVSDGK--VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE  114 (501)
Q Consensus        38 ~~~~~~tl~~-~l~~~a~~~p~~~al~~~~~~~~~--~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~  114 (501)
                      ++....|+.+ .|++++..+|+++|+++.   +..  +...+.+||+||.++++++|++|+++|+++||+|+++++|+++
T Consensus       169 f~g~~ln~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e  245 (728)
T PLN03052        169 LPGAVLNVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVH  245 (728)
T ss_pred             CCCCEeEHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence            3344455655 566666678999999987   432  2345789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChh------hhhhcCccCCCCccEEEEecCCChhhH
Q 010774          115 WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP------SILSCLPRCCLYLKTIVSFANVSSSQK  188 (501)
Q Consensus       115 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~  188 (501)
                      +++++|||+++|++++|++|.++.+++.++++.++++++|+++....      ...... +...  ..++++........
T Consensus       246 ~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~-~~~~--~~~iv~~~~~~~~~  322 (728)
T PLN03052        246 AVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVV-EAKA--PKAIVLPADGKSVR  322 (728)
T ss_pred             HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHH-HhcC--CcEEEEeCCCCccc
Confidence            99999999999999999999999999999999999999999875321      110100 0001  12333321110000


Q ss_pred             HHhhhcCceEeeHHHHHhcCC-----CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccC
Q 010774          189 KEAEELGVSCFSWEEFLQLGT-----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC  263 (501)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~  263 (501)
                      .   ........|++++....     ..........+++++|+|||||||.||||+++|.+++.........+     .+
T Consensus       323 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l  394 (728)
T PLN03052        323 V---KLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DI  394 (728)
T ss_pred             c---ccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CC
Confidence            0   00001235666654321     01111223568999999999999999999999999877665544333     67


Q ss_pred             CCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhH
Q 010774          264 SEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS  341 (501)
Q Consensus       264 ~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  341 (501)
                      ..+|++++..|+.|.++...++.+|+.|+++++..+  ++..+++.++++++|++.++|++++.+.+.            
T Consensus       395 ~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~------------  462 (728)
T PLN03052        395 RKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNT------------  462 (728)
T ss_pred             CCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhc------------
Confidence            889999999999999998778899999999999875  557899999999999999999999988651            


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC-CCeeeeeccccc
Q 010774          342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTES  420 (501)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~-~~l~~~yG~tE~  420 (501)
                                               ...+.++++        +||.+++||++++++...++.+.++ ..+.+.||+||+
T Consensus       463 -------------------------~~~~~~dls--------sLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~  509 (728)
T PLN03052        463 -------------------------NCMAGLDWS--------SIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTEL  509 (728)
T ss_pred             -------------------------CCcccCChh--------heeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhh
Confidence                                     112334454        8999999999999999888888765 579999999999


Q ss_pred             CcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCC--ccccccCCcccchhhhc-----cC
Q 010774          421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNT--LFSGYYKRPDLTEEVIV-----DG  493 (501)
Q Consensus       421 ~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~--v~~gY~~~~~~~~~~~~-----dg  493 (501)
                      ++.+..........++++|.|++|++++|+| ++|++++.+..+.|||+++++.  ...+|+++.. ...-|.     .|
T Consensus       510 ~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g  587 (728)
T PLN03052        510 GGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNG  587 (728)
T ss_pred             CcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCC
Confidence            8754433222234458999999999999999 9998887653246999998653  3356776542 222221     24


Q ss_pred             --cccCCCC
Q 010774          494 --WFHTEVH  500 (501)
Q Consensus       494 --w~~TGD~  500 (501)
                        ||+|||.
T Consensus       588 ~~~~~tGDl  596 (728)
T PLN03052        588 KILRRHGDI  596 (728)
T ss_pred             CEEEecCce
Confidence              9999996

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=7.5e-48  Score=404.08  Aligned_cols=393  Identities=20%  Similarity=0.262  Sum_probs=293.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ...|+.++|.+.++.+|+++|+++.   +      .++||+||.++++++|++|.++|+++||+|+|+++|++++++++|
T Consensus        12 ~~~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~l   82 (579)
T PLN03102         12 VPLTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHF   82 (579)
T ss_pred             ccccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            4467899999999999999999875   3      379999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCC----CCccEEEEecCCChhhHHHhhhcCc
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC----LYLKTIVSFANVSSSQKKEAEELGV  196 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~  196 (501)
                      ||+++|++++|++|.++.+++.++|+.++++++|++.+....+........    .....++.++.......     ...
T Consensus        83 a~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  157 (579)
T PLN03102         83 AVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKR-----PSS  157 (579)
T ss_pred             HHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccC-----Ccc
Confidence            999999999999999999999999999999999998876654433221110    01123333332111000     001


Q ss_pred             eEeeHHHHHhcCCCCCC-----CCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEE
Q 010774          197 SCFSWEEFLQLGTLDCE-----LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS  271 (501)
Q Consensus       197 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (501)
                      ....+++++........     ......+++++|+|||||||.||+|+++|.++..........+     .+...+++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~  232 (579)
T PLN03102        158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLW  232 (579)
T ss_pred             cccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEe
Confidence            12345555543311110     1223568899999999999999999999999755443322222     4556778999


Q ss_pred             ecChHHHHHHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 010774          272 FLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (501)
Q Consensus       272 ~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (501)
                      .+|++|..++...+.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+++.....                 
T Consensus       233 ~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------  295 (579)
T PLN03102        233 TLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLD-----------------  295 (579)
T ss_pred             cCChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccc-----------------
Confidence            9999999998877778888998887764 8889999999999999999999999987531100                 


Q ss_pred             HHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCC
Q 010774          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD  430 (501)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~  430 (501)
                                          ...+        .+++.+++||+++++.+.+++++ +|..+++.||+||+++.++.....
T Consensus       296 --------------------~~~~--------~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~  346 (579)
T PLN03102        296 --------------------LSPR--------SGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQ  346 (579)
T ss_pred             --------------------cCCc--------ccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccc
Confidence                                0001        25778999999999999999876 589999999999998654322110


Q ss_pred             C-------------CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccC
Q 010774          431 V-------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT  497 (501)
Q Consensus       431 ~-------------~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~T  497 (501)
                      .             ....+..+.+++++  +|++.+.+..++.+.++.|||+|+|+.++.|||++++.+.+.|.+|||+|
T Consensus       347 ~~~~~~~~~~~~~~~~~~g~~~~~~~~v--~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~T  424 (579)
T PLN03102        347 DEWNRLPENQQMELKARQGVSILGLADV--DVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNT  424 (579)
T ss_pred             cccccCCcccccccccCCCcccccccce--EEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceec
Confidence            0             01123444555554  45552345555544346899999999999999999999999999999999


Q ss_pred             CCC
Q 010774          498 EVH  500 (501)
Q Consensus       498 GD~  500 (501)
                      ||.
T Consensus       425 GDl  427 (579)
T PLN03102        425 GDV  427 (579)
T ss_pred             Cce
Confidence            995

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-47  Score=402.45  Aligned_cols=389  Identities=24%  Similarity=0.399  Sum_probs=308.8

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.++|.+.++++|+++|+++.   +.+    +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus        17 ~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a   89 (558)
T PRK12583         17 TQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFA   89 (558)
T ss_pred             cCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence            367999999999999999999875   432    5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChh-----hhhhcCc------------cCCCCccEEEEecCCC
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLP------------RCCLYLKTIVSFANVS  184 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-----~~~~~~~------------~~~~~~~~v~~~~~~~  184 (501)
                      |+++|++++++++.++.+++.++++.++++++|++.....     .+.....            .....+..++......
T Consensus        90 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (558)
T PRK12583         90 TARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP  169 (558)
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCC
Confidence            9999999999999999999999999999999999865321     1111100            0111223333333221


Q ss_pred             hhhHHHhhhcCceEeeHHHHHhcCCC------CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeee
Q 010774          185 SSQKKEAEELGVSCFSWEEFLQLGTL------DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV  258 (501)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~  258 (501)
                      .          .....++++......      .........+++++++|||||||.||+|.++|.++...+......+  
T Consensus       170 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~--  237 (558)
T PRK12583        170 P----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL--  237 (558)
T ss_pred             C----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh--
Confidence            1          012233333322110      0111223567899999999999999999999999998887766555  


Q ss_pred             ccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhh
Q 010774          259 TGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS  335 (501)
Q Consensus       259 ~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (501)
                         ++..+|++++..|++|.+|... ++.++..|+++++...  ++..+++.++++++|+++++|.++..+++...    
T Consensus       238 ---~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~----  310 (558)
T PRK12583        238 ---GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQ----  310 (558)
T ss_pred             ---CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcccc----
Confidence               7788999999999999999875 7788999999987643  89999999999999999999999887764210    


Q ss_pred             cCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC-CCeeee
Q 010774          336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQG  414 (501)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~-~~l~~~  414 (501)
                                                       ....++        +++|.+++||+++++++.+++.+.++ ..+++.
T Consensus       311 ---------------------------------~~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~  349 (558)
T PRK12583        311 ---------------------------------RGNFDL--------SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIA  349 (558)
T ss_pred             ---------------------------------ccCCCc--------hhheEEEecCCCCCHHHHHHHHHHcCCcceecc
Confidence                                             011122        27999999999999999999998885 479999


Q ss_pred             ecccccCcceecccCCC--CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-c
Q 010774          415 YGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V  491 (501)
Q Consensus       415 yG~tE~~~~~~~~~~~~--~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~  491 (501)
                      ||+||++.+++......  .....++|+|+|++.++|+| +++.+++.+  +.|||+|+|+.++.||+++++.+.+.+ .
T Consensus       350 YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~  426 (558)
T PRK12583        350 YGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRG--EIGELCTRGYSVMKGYWNNPEATAESIDE  426 (558)
T ss_pred             ccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCCCCCCCC--CeeEEEEEeCccchhhcCChHHHHhhcCC
Confidence            99999998776543322  23457899999999999999 777766665  899999999999999999999998877 7


Q ss_pred             cCcccCCCC
Q 010774          492 DGWFHTEVH  500 (501)
Q Consensus       492 dgw~~TGD~  500 (501)
                      +|||+|||.
T Consensus       427 ~~~~~TGDl  435 (558)
T PRK12583        427 DGWMHTGDL  435 (558)
T ss_pred             CCCeeccce
Confidence            899999995

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.4e-48  Score=448.17  Aligned_cols=385  Identities=16%  Similarity=0.106  Sum_probs=293.5

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCC---CCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGK---VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~---~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~  118 (501)
                      ..++.++|+++++.+|+++|+++.   ...   ....+.+||+||.++++++|++|.+.|+++||+|+|+++|+++++++
T Consensus       235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~  311 (1389)
T TIGR03443       235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA  311 (1389)
T ss_pred             cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence            357999999999999999999864   211   12236899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh---hhhhhcCccCC---CCccEEEEecCCChhhHHHhh
Q 010774          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---PSILSCLPRCC---LYLKTIVSFANVSSSQKKEAE  192 (501)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~---~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~  192 (501)
                      +|||+++|++++|++|.++.+++.++++.++++++++.....   ..+........   ..+..+. +.......   ..
T Consensus       312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~  387 (1389)
T TIGR03443       312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALA-LQDDGSLV---GG  387 (1389)
T ss_pred             HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEE-eccccccc---cc
Confidence            999999999999999999999999999999999999876421   11111110000   0111111 11100000   00


Q ss_pred             hcCceEeeHHHHHhcC---CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEE
Q 010774          193 ELGVSCFSWEEFLQLG---TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY  269 (501)
Q Consensus       193 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (501)
                        ... ....+.+...   ..........++++++|+|||||||.||||+++|+++.+.+.++...+     .+..+|++
T Consensus       388 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  459 (1389)
T TIGR03443       388 --SLE-GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF  459 (1389)
T ss_pred             --ccc-cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence              000 0000011000   001111234578899999999999999999999999999988877666     78889999


Q ss_pred             EEecChHHHHHHHHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHH
Q 010774          270 FSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF  345 (501)
Q Consensus       270 l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (501)
                      +...|++|..++..++.+|+.|+++++.+.    ++..+++.++++++|+++++|++++.+.....              
T Consensus       460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------  525 (1389)
T TIGR03443       460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT--------------  525 (1389)
T ss_pred             EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc--------------
Confidence            999999999888889999999999998764    67899999999999999999999988753100              


Q ss_pred             HHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcce
Q 010774          346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGC  424 (501)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~  424 (501)
                                                .++        +++|.+++||+++++...+++.+.+ +++++|.||+||++.++
T Consensus       526 --------------------------~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  571 (1389)
T TIGR03443       526 --------------------------TPI--------PSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV  571 (1389)
T ss_pred             --------------------------ccC--------CCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence                                      001        3899999999999999999988865 78999999999998776


Q ss_pred             ecccCCC----------CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh
Q 010774          425 FTSLADV----------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  490 (501)
Q Consensus       425 ~~~~~~~----------~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~  490 (501)
                      +......          .....++|+|+++++++|+| +++...+...|++|||||+|++++.||+|+|+.|++.|
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f  646 (1389)
T TIGR03443       572 SYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKF  646 (1389)
T ss_pred             EEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhc
Confidence            6432211          01235789999999999999 65543344445999999999999999999999999887

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.3e-48  Score=417.44  Aligned_cols=378  Identities=19%  Similarity=0.268  Sum_probs=291.7

Q ss_pred             CCCCHHHHHHHHHHhCCC-CcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~-~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ...|+.+.|.++++++|+ ++|+.+.   +.     +.+||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~  272 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIEDV---NF-----TPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI  272 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEcC---CC-----CcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence            457899999999999998 5777532   11     4799999999999999999987 599999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhh-hcCccCCCCccEEEEecCCChhhHHHhhhcCceE
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  198 (501)
                      |||+++|++++|+++.++.+++.++++.++++++|++.+..+... ........... ++.+.+....            
T Consensus       273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~------------  339 (718)
T PRK08043        273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-WVYLEDLKDD------------  339 (718)
T ss_pred             HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-EEEhhhhhhh------------
Confidence            999999999999999999999999999999999999876543210 00111111111 2222211000            


Q ss_pred             eeHHH--H--HhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecC
Q 010774          199 FSWEE--F--LQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (501)
Q Consensus       199 ~~~~~--~--~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (501)
                      ..+.+  .  ..............++++++++|||||||.||||++||.++++....+...+     .+..+|++++.+|
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P  414 (718)
T PRK08043        340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP  414 (718)
T ss_pred             cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence            00100  0  0000011111234568999999999999999999999999998887766555     7788999999999


Q ss_pred             hHHHHHHHH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 010774          275 LAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY  351 (501)
Q Consensus       275 l~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (501)
                      ++|.+++.. ++.++..|+++++.+.  +...+++.++++++|+++++|+++..+.+.                      
T Consensus       415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~----------------------  472 (718)
T PRK08043        415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARF----------------------  472 (718)
T ss_pred             chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhh----------------------
Confidence            999999875 7789999999998763  677888999999999999999998776431                      


Q ss_pred             HhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC
Q 010774          352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV  431 (501)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~  431 (501)
                                       .+..++        ++||.+++||+++++++.+.|++.+|+.+++.||+||++++++..... 
T Consensus       473 -----------------~~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~-  526 (718)
T PRK08043        473 -----------------ANPYDF--------ARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPM-  526 (718)
T ss_pred             -----------------cCcccc--------cceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCc-
Confidence                             011122        389999999999999999999998999999999999998776654332 


Q ss_pred             CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccC--Cccc-------chhh-hccCcccCCCC
Q 010774          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK--RPDL-------TEEV-IVDGWFHTEVH  500 (501)
Q Consensus       432 ~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~--~~~~-------~~~~-~~dgw~~TGD~  500 (501)
                      ...++++|+|+||++++|+| +++.      ++.|||+++|++++.|||+  +++.       +.+. +.+|||+|||.
T Consensus       527 ~~~~~svG~p~pg~~~~i~d-~~~~------~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDl  598 (718)
T PRK08043        527 AAKPGTVGRILPGMDARLLS-VPGI------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDI  598 (718)
T ss_pred             ccCCCCCCCcCCCCeeEEec-CCCC------CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCE
Confidence            23468999999999999998 5542      2579999999999999998  4442       2222 25799999995

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1e-47  Score=400.20  Aligned_cols=384  Identities=17%  Similarity=0.202  Sum_probs=305.7

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      +.++.++|+++++  |+++|+++.   +      +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++|
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence            5689999999887  999999865   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh----hhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCce
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (501)
                      |+++|++++++.+.....++..+++.++++.++++....    ....+...........++..... .            
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~------------  159 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD-G------------  159 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC-C------------
Confidence            999999888777777788899999999999999986531    11112222222233333333221 0            


Q ss_pred             EeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHH
Q 010774          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (501)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~  277 (501)
                      ...+.+++.............++++++++|||||||.||+|.+||+++...+......+     .+..+|++++.+|++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~h  234 (536)
T PRK10946        160 EHSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAAH  234 (536)
T ss_pred             CccHHHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCccc
Confidence            12344444333222223344678999999999999999999999999999988766655     7788999999999999


Q ss_pred             HHHHHH--HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       278 ~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      .+++..  ++.++..|+++++.+. ++..+++.++++++|++.++|.+++.+++.......                   
T Consensus       235 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~-------------------  295 (536)
T PRK10946        235 NYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS-------------------  295 (536)
T ss_pred             cccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc-------------------
Confidence            888763  6788999999988764 889999999999999999999999998764311100                   


Q ss_pred             hhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcc
Q 010774          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (501)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (501)
                                      ...+        +++|.+++||+++++++.+.+.+.+|+++++.||+||++..+..........
T Consensus       296 ----------------~~~~--------~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~  351 (536)
T PRK10946        296 ----------------RAQL--------ASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERI  351 (536)
T ss_pred             ----------------cccc--------cceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccc
Confidence                            0001        3899999999999999999999989999999999999654433221122234


Q ss_pred             cCcccccc-cCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          435 IGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       435 ~~s~G~p~-p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      .+++|+|+ |++.++|+| +++++++.|  +.|||+++|+.++.||+++++.+++.| .||||+|||.
T Consensus       352 ~~~~G~p~~~~~~v~i~d-~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl  416 (536)
T PRK10946        352 FTTQGRPMSPDDEVWVAD-ADGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDL  416 (536)
T ss_pred             cccCCcccCCCceEEEEC-CCCCCCCCC--CccEEEEecCccchhhcCCcccchhhcccCCceecCce
Confidence            57899999 899999999 888877766  999999999999999999999999888 7899999994

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=7.7e-48  Score=408.42  Aligned_cols=400  Identities=17%  Similarity=0.162  Sum_probs=296.5

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHH
Q 010774           39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (501)
Q Consensus        39 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~  118 (501)
                      +....|+.+.+..   +.++++|+++.   +. .+..+.+||+||.+++.++|++|+++|+++||+|+++++|+++++++
T Consensus        83 ~~~~~n~~~~~~~---~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~  155 (652)
T TIGR01217        83 PGARLNYAENLLR---AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVA  155 (652)
T ss_pred             CCCeeeHHHHHhc---cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence            3445566666654   35789999886   33 34457899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhhhhcCccCCCCccEEEEecCCChhhHH
Q 010774          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKK  189 (501)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  189 (501)
                      +|||+++|++++|+++.++.+++.++++.++++++|+++...         +.+.+.. .....++.++.+.........
T Consensus       156 ~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~  234 (652)
T TIGR01217       156 MLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVR-KELPTLRAVVHIPYLGPRETE  234 (652)
T ss_pred             HHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEeCCCCcccc
Confidence            999999999999999999999999999999999999987542         2222222 122344555554322100000


Q ss_pred             HhhhcCceEeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH-HhhcceeeeeccccCCCCc
Q 010774          190 EAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEED  267 (501)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d  267 (501)
                      ..  .......+++++... ...........+++++|+|||||||.||||+++|++++.. .......+     ++..+|
T Consensus       235 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d  307 (652)
T TIGR01217       235 AP--KIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGPGD  307 (652)
T ss_pred             cc--cccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCCCc
Confidence            00  001123566665442 1122223445689999999999999999999999987643 33333334     678899


Q ss_pred             EEEEecChHHHHHHHHHHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHH
Q 010774          268 TYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK  342 (501)
Q Consensus       268 ~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (501)
                      ++++..|+.|..+ .+++.+|+.|+++++..+     ++..+++.++++++|++..+|++++.+.+.             
T Consensus       308 ~~~~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~-------------  373 (652)
T TIGR01217       308 RLFYYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA-------------  373 (652)
T ss_pred             EEEEeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc-------------
Confidence            9999999999754 345689999999999853     678999999999999988777777665431             


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC--CCeeeeeccccc
Q 010774          343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG--APLTQGYGLTES  420 (501)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~--~~l~~~yG~tE~  420 (501)
                                            .......++++        +||.+++||+++++++.+++.+.++  +.+.+.||+||+
T Consensus       374 ----------------------~~~~~~~~~l~--------sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~  423 (652)
T TIGR01217       374 ----------------------GVHPARTHDLS--------ALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDI  423 (652)
T ss_pred             ----------------------CCCccccCChh--------heeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHH
Confidence                                  00011233444        8999999999999999999998875  457789999997


Q ss_pred             CcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecC--CccccccCCcccch--hh-h--ccC
Q 010774          421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTE--EV-I--VDG  493 (501)
Q Consensus       421 ~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~--~~-~--~dg  493 (501)
                      ++.............+++|.|.+|++++|+| ++|++++   ++.|||+++||  +++.|||++++.++  +. |  .+|
T Consensus       424 ~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~~---g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g  499 (652)
T TIGR01217       424 CSCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPVT---GEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPG  499 (652)
T ss_pred             hccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCCC---CCccEEEEecCCCccccceeCCCccchhHHhhhcCCCC
Confidence            6443332222233458899999999999999 8888763   48999999996  68999999998664  22 2  268


Q ss_pred             cccCCCCC
Q 010774          494 WFHTEVHR  501 (501)
Q Consensus       494 w~~TGD~~  501 (501)
                      ||+|||.+
T Consensus       500 ~~~tGDlg  507 (652)
T TIGR01217       500 VWRHGDWI  507 (652)
T ss_pred             EEEcCCcE
Confidence            99999963

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=2.2e-47  Score=400.16  Aligned_cols=399  Identities=23%  Similarity=0.360  Sum_probs=307.2

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~-~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ..++.+.|.++++.+|+++|+++.    +     +.+||+||.++++++|+.|. +.|+++||+|+++++|++++++++|
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   94 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF   94 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            357999999999999999999864    3     48999999999999999997 6899999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhh-----------HH
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ-----------KK  189 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~  189 (501)
                      ||+++|++++|++|.++.+++.++++.++++.+++++.....+.......  ....++.........           ..
T Consensus        95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (560)
T PRK08751         95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--PVKQVITTGLGDMLGFPKAALVNFVVKY  172 (560)
T ss_pred             HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--CccEEEEechhhhcccccchhhhhhhhh
Confidence            99999999999999999999999999999999999887665543332211  122233221000000           00


Q ss_pred             ----HhhhcCceEeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCC
Q 010774          190 ----EAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS  264 (501)
Q Consensus       190 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~  264 (501)
                          ...........+.+..... ...........+++++++|||||||.||+|.++|.++...+......+... ....
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~-~~~~  251 (560)
T PRK08751        173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGT-GKLE  251 (560)
T ss_pred             hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccc-cccC
Confidence                0000001122344443322 111222334678899999999999999999999999988776544332111 0122


Q ss_pred             C-CcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChh
Q 010774          265 E-EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL  340 (501)
Q Consensus       265 ~-~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  340 (501)
                      . .++++..+|++|.+++.. .+.++..|+++++...  ++..+++.++++++|++.++|.++..+.+            
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~------------  319 (560)
T PRK08751        252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLN------------  319 (560)
T ss_pred             CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHc------------
Confidence            3 467788899999999875 5667777887766543  88999999999999999999999988765            


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeeccccc
Q 010774          341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES  420 (501)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~  420 (501)
                                               .+...+++++        ++|.+++||+++++.+.+.|++.+++.+++.||+||+
T Consensus       320 -------------------------~~~~~~~~l~--------~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  366 (560)
T PRK08751        320 -------------------------TPGFDQIDFS--------SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET  366 (560)
T ss_pred             -------------------------CcCcCCcchh--------hheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence                                     1112233444        7899999999999999999999889999999999999


Q ss_pred             CcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCC
Q 010774          421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEV  499 (501)
Q Consensus       421 ~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD  499 (501)
                      +.+++....+.....+++|.|+++++++|+| +++..++.+  +.|||+|+|+.++.||+++++.+++.| .+|||+|||
T Consensus       367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  443 (560)
T PRK08751        367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIG--EIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD  443 (560)
T ss_pred             CCceecccccccccCCCcCccCCCceEEEEC-CCCCCCCCC--CceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence            8876655443334457899999999999999 888877665  899999999999999999999998887 689999999


Q ss_pred             C
Q 010774          500 H  500 (501)
Q Consensus       500 ~  500 (501)
                      .
T Consensus       444 ~  444 (560)
T PRK08751        444 I  444 (560)
T ss_pred             e
Confidence            5

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=2.6e-47  Score=394.96  Aligned_cols=383  Identities=20%  Similarity=0.243  Sum_probs=309.1

Q ss_pred             CCHHHHHHHH-HHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           43 ESPWQFFCDS-AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        43 ~tl~~~l~~~-a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ++..++|+++ ++.+|+++|+++.   +      ..+||.||.++++++|++|.+.|+++|++|+++++|+++++++++|
T Consensus         4 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a   74 (508)
T TIGR02262         4 NAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLG   74 (508)
T ss_pred             hHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            3456777776 6779999999754   2      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|+++..+.+++.++++.+++++++++.+....+.+... .......++..+....           ....+
T Consensus        75 ~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~  142 (508)
T TIGR02262        75 AIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALG-KSPHLEHRVVVGRPEA-----------GEVQL  142 (508)
T ss_pred             HHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHh-cCCCccEEEEeCCCCc-----------ccccH
Confidence            99999999999999999999999999999999999876665543322 1233344444432211           12234


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-cceeeeeccccCCCCcEEEEecChHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (501)
                      .++..............++++++++|||||||.||+|.++|+++...+.. ....+     .+..+|+++..+|++|.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  217 (508)
T TIGR02262       143 AELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFAYG  217 (508)
T ss_pred             HHHhhcCCCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHHHH
Confidence            44443322222223445688999999999999999999999999887765 22333     6788999999999999999


Q ss_pred             HHH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          281 QII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       281 ~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      +.. ++.++..|+++++.+.  ++..+++.++++++|.++++|.++..+++..                           
T Consensus       218 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~---------------------------  270 (508)
T TIGR02262       218 LGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADP---------------------------  270 (508)
T ss_pred             HHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCc---------------------------
Confidence            875 6778999999998764  7999999999999999999999888765410                           


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCc
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT  437 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s  437 (501)
                                .......        +++|.+++||+++++++.+.|.+.+++++++.||+||++.+++....+. ...++
T Consensus       271 ----------~~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~  331 (508)
T TIGR02262       271 ----------NLPAEDQ--------VRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD-VRYGT  331 (508)
T ss_pred             ----------ccccccc--------ccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccC-CCCCC
Confidence                      0000111        3899999999999999999999999999999999999997665443332 33478


Q ss_pred             ccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       438 ~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +|+|++|++++|+| +++..++.+  ++|||+++|+.++.||+++++.+.+.|.+|||+|||.
T Consensus       332 ~G~~~~g~~v~i~d-~~~~~~~~g--~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~  391 (508)
T TIGR02262       332 SGKPVPGYRLRLVG-DGGQDVAAG--EPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDK  391 (508)
T ss_pred             cCCCCCCcEEEEEC-CCCCCCCCC--CeeEEEEecCccccccCCCHHHhHhhhhcCceeccce
Confidence            99999999999999 888877766  8999999999999999999999998888999999995

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3e-47  Score=399.35  Aligned_cols=399  Identities=25%  Similarity=0.408  Sum_probs=300.2

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ..+++.+.|.+.++.+|+++|+++.   +      +.+||+||.+++.++|++|.+.|+++||+|+++++|++++++++|
T Consensus        22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   92 (563)
T PRK06710         22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY   92 (563)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            3468999999999999999999875   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCC--hh-hHH---Hhhh-
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS--SS-QKK---EAEE-  193 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-~~~---~~~~-  193 (501)
                      ||+++|++++|++|..+.+++..+++.++++.+++++.....+......  .....++......  .. ...   .... 
T Consensus        93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (563)
T PRK06710         93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TKIEHVIVTRIADFLPFPKNLLYPFVQKK  170 (563)
T ss_pred             HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hccceeEEeccccccccccccccchhhcc
Confidence            9999999999999999999999999999999999988654433221110  1111221110000  00 000   0000 


Q ss_pred             ---------cCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCC
Q 010774          194 ---------LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS  264 (501)
Q Consensus       194 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~  264 (501)
                               .......++.+...............+++++++|||||||.||+|.++|++++.........+   .....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~  247 (563)
T PRK06710        171 QSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL---YNCKE  247 (563)
T ss_pred             cccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc---cCCCC
Confidence                     000001112211111111111122357899999999999999999999999976543322211   00123


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHH
Q 010774          265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK  342 (501)
Q Consensus       265 ~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (501)
                      .++++++..|++|.+++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+++.             
T Consensus       248 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------  314 (563)
T PRK06710        248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNS-------------  314 (563)
T ss_pred             CCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcC-------------
Confidence            4568899999999999875 6678999999998765 899999999999999999999999987641             


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCc
Q 010774          343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS  422 (501)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~  422 (501)
                                              +.....+++        ++|.+++||+++++++.+++.+.++..+++.||+||++.
T Consensus       315 ------------------------~~~~~~~~~--------~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  362 (563)
T PRK06710        315 ------------------------PLLKEYDIS--------SIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSP  362 (563)
T ss_pred             ------------------------CccccCChh--------hhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCcc
Confidence                                    111122222        789999999999999999999988999999999999987


Q ss_pred             ceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          423 GCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       423 ~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ++..........++++|+|++++.++|+|.+++..++.+  +.|||+++|+.++.||+++++.+...+.+|||+|||.
T Consensus       363 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~  438 (563)
T PRK06710        363 VTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPG--EIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDV  438 (563)
T ss_pred             ccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCC--CceEEEEecCccchhhhCChHHHhhhcccCcccccce
Confidence            654433323334578999999999999984555555555  8999999999999999999999988888999999995

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=5e-47  Score=395.70  Aligned_cols=401  Identities=23%  Similarity=0.352  Sum_probs=306.2

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      .+.++.+.|+++++.+|+++|+++.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus        19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l   89 (541)
T TIGR03205        19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF   89 (541)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            4568999999999999999999864   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCC--hhhhhhcCccCCCCccEEEEecCCChhh--HHHh-hhcC
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCCLYLKTIVSFANVSSSQ--KKEA-EELG  195 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~-~~~~  195 (501)
                      ||+++|++++|++|..+.+++.++++.++++.+|+++..  .....+....  ..+..++.+.......  .... ....
T Consensus        90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (541)
T TIGR03205        90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPIPAD  167 (541)
T ss_pred             HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEecccccccccccccccCCC
Confidence            999999999999999999999999999999999998632  1111111111  1123333332211000  0000 0001


Q ss_pred             ceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeee-ccccCCCCcEEEEecC
Q 010774          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV-TGKVCSEEDTYFSFLP  274 (501)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~-~~~~~~~~d~~l~~~p  274 (501)
                      .....++++++............++++++++|||||||.||+|+++|.++....... ..+.. ........+++++..|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p  246 (541)
T TIGR03205       168 PRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLP  246 (541)
T ss_pred             cccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEecc
Confidence            123456666554322222334567889999999999999999999999987654421 11100 0012234578999999


Q ss_pred             hHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 010774          275 LAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (501)
Q Consensus       275 l~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (501)
                      ++|.+++.. ++.++..|+++++... ++..+++.|+++++|++.++|.++..+++.                       
T Consensus       247 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-----------------------  303 (541)
T TIGR03205       247 LFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALAND-----------------------  303 (541)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhC-----------------------
Confidence            999998875 7788999999888765 999999999999999999999999887641                       


Q ss_pred             hhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCC
Q 010774          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF  432 (501)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~  432 (501)
                                    +...+.++        +++|.+++||+++++++.+++.+.++..+++.||+||++.+++.......
T Consensus       304 --------------~~~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~  361 (541)
T TIGR03205       304 --------------PSLEKRDL--------SSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGP  361 (541)
T ss_pred             --------------ccccccCc--------cccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCC
Confidence                          11111122        27999999999999999999998889999999999999887665443333


Q ss_pred             cccCcccccccCeEEEEeec-CCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          433 NMIGTVGVPMTTVEARLESV-PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       433 ~~~~s~G~p~p~~~i~I~d~-~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ..++++|+|++++.++|++. +++.+++.+  +.|||+++|++++.||+++++.+.+.|.++||+|||.
T Consensus       362 ~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~  428 (541)
T TIGR03205       362 DKPGSIGLMLPGIELDVVSLDDPTKVLPPG--EVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDI  428 (541)
T ss_pred             CCCCCcceeccCceeEEEecCCCCccCCCC--CeeEEEEecCCccccccCChhhhHhhhccCCcccCce
Confidence            44578999999999988642 445555544  8999999999999999999999998888999999995

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=3.8e-48  Score=472.75  Aligned_cols=369  Identities=20%  Similarity=0.226  Sum_probs=309.6

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.++|.++++++|+++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|+|+++|++++++++||
T Consensus      3094 ~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~la 3164 (3956)
T PRK12467       3094 ERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLA 3164 (3956)
T ss_pred             cccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999986   4      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|++|.++.+++.++++.++++++|++......+....      ...++.++...                 
T Consensus      3165 vl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~------~~~~~~~~~~~----------------- 3221 (3956)
T PRK12467       3165 VLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPA------GDTALTLDRLD----------------- 3221 (3956)
T ss_pred             HHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhccccc------CCceeeecchh-----------------
Confidence            9999999999999999999999999999999999876544332110      01112221110                 


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                         ........+.....++++++|+|||||||.||||+++|+++.+.+.+....+     .+..+|++++..|++|..+.
T Consensus      3222 ---~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 3293 (3956)
T PRK12467       3222 ---LNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFDGAQ 3293 (3956)
T ss_pred             ---hcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHhHHH
Confidence               0011111222345678999999999999999999999999999999887776     78899999999999999998


Q ss_pred             HHHHHHHhcCcEEEEecC---CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhcc
Q 010774          282 IIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (501)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (501)
                      ..++.+|+.|+++++.+.   ++..+++.|+++++|++.++|++++.+++...                           
T Consensus      3294 ~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--------------------------- 3346 (3956)
T PRK12467       3294 ERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG--------------------------- 3346 (3956)
T ss_pred             HHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc---------------------------
Confidence            889999999999999864   88999999999999999999999998865210                           


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCCC----c
Q 010774          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVF----N  433 (501)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~----~  433 (501)
                                  ..++        ++||.+++|||++++++.++|.+.+ ++.++|.||+||+++.++.......    .
T Consensus      3347 ------------~~~~--------~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 3406 (3956)
T PRK12467       3347 ------------GADC--------ASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEA 3406 (3956)
T ss_pred             ------------ccCC--------CCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCC
Confidence                        0011        3799999999999999999998877 6789999999999987765433221    2


Q ss_pred             ccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccC-------cccCCCC
Q 010774          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDG-------WFHTEVH  500 (501)
Q Consensus       434 ~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dg-------w~~TGD~  500 (501)
                      ...++|+|++|++++|+| ++++++|.|  ++|||+|+|+++++||+|+|+.|++.| .|+       ||+|||-
T Consensus      3407 ~~~~iG~p~~~~~~~v~d-~~~~~vp~G--~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl 3478 (3956)
T PRK12467       3407 PYAPIGRPVAGRSIYVLD-GQLNPVPVG--VAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDL 3478 (3956)
T ss_pred             CCCCCccccCCCEEEEEC-CCCCCCCCC--CCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchh
Confidence            236899999999999999 889888876  999999999999999999999999998 444       6999995

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=9.8e-48  Score=439.68  Aligned_cols=371  Identities=20%  Similarity=0.261  Sum_probs=307.3

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.+.|.++++.+|+++|+++.   +      +.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus       457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la  527 (1296)
T PRK10252        457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA  527 (1296)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            368999999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|++|.++.+++.++++.+++++++++.+....+...     ... .+..                     +
T Consensus       528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~---------------------~  580 (1296)
T PRK10252        528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSLC---------------------Y  580 (1296)
T ss_pred             HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eeee---------------------c
Confidence            999999999999999999999999999999999988655433211     000 1111                     1


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                      .+..... .........++++++|+|||||||.||||+++|+++++.+.++...+     ++..+|++++..|++|..++
T Consensus       581 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~  654 (1296)
T PRK10252        581 NAPLAPQ-GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVSV  654 (1296)
T ss_pred             ccccccc-cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhhH
Confidence            1111000 01111223568899999999999999999999999999998877776     78899999999999999998


Q ss_pred             HHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      ..++.+|+.|+++++.+.    ++..+++.++++++|++.++|++++.+++......                       
T Consensus       655 ~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~-----------------------  711 (1296)
T PRK10252        655 WEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG-----------------------  711 (1296)
T ss_pred             HHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc-----------------------
Confidence            888999999999999763    88999999999999999999999998875321100                       


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC------
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV------  431 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~------  431 (501)
                                  ....+        +++|.+++||+++++++.+.|.+.++++++|.||+||++.+++......      
T Consensus       712 ------------~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~  771 (1296)
T PRK10252        712 ------------ARQSC--------ASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAV  771 (1296)
T ss_pred             ------------ccccC--------CCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeeccccccccc
Confidence                        00001        3799999999999999999999988999999999999988766543322      


Q ss_pred             CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-cc------CcccCCCC
Q 010774          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD------GWFHTEVH  500 (501)
Q Consensus       432 ~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~d------gw~~TGD~  500 (501)
                      .....++|+|++|++++|+| ++++.++.|  +.|||+|+|++++.||+++++.|++.| .+      +||+|||.
T Consensus       772 ~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g--~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl  844 (1296)
T PRK10252        772 RGSSVPIGYPVWNTGLRILD-ARMRPVPPG--VAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDV  844 (1296)
T ss_pred             CCCCCCcccccCCCEEEEEC-CCCCCCCCC--CceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCce
Confidence            12346799999999999999 888888776  899999999999999999999999988 32      49999995

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.6e-47  Score=394.76  Aligned_cols=396  Identities=20%  Similarity=0.261  Sum_probs=309.2

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      +++.++.++|+++++++|++++++..   ..  +..+.+||.||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~   81 (542)
T PRK06018          7 DWPLLCHRIIDHAARIHGNREVVTRS---VE--GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAW   81 (542)
T ss_pred             cCCCCHHHHHHHHHHhCCCceEEEee---cc--CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHH
Confidence            66789999999999999999999853   11  23468999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      +||+++|++++|++|.++.+++..+++.++++.++++.+..+.+.+.... ......++.+.+.....    ........
T Consensus        82 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~  156 (542)
T PRK06018         82 YGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADK-LPSVERYVVLTDAAHMP----QTTLKNAV  156 (542)
T ss_pred             HHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhh-CCCccEEEEeccccccc----ccCccccc
Confidence            99999999999999999999999999999999999998876665443222 23344555443321100    00111233


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHH-HHH-hhcceeeeeccccCCCCcEEEEecChHH
Q 010774          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV-AEV-LSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (501)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~-~~~-~~~~~~~~~~~~~~~~~d~~l~~~pl~~  277 (501)
                      .+++++..............+++++++|||||||.||+|.+||.+.+ ... ......+     ++..+|+++...|++|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h  231 (542)
T PRK06018        157 AYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFH  231 (542)
T ss_pred             cHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHH
Confidence            55666544322222234466789999999999999999999999743 222 2222233     6778899999999999


Q ss_pred             HHHHHHHHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010774          278 IYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (501)
Q Consensus       278 ~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (501)
                      .+++...+.++..|+++++...  ++..+++.++++++|.++++|++++.+++.....                      
T Consensus       232 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~----------------------  289 (542)
T PRK06018        232 ANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKE----------------------  289 (542)
T ss_pred             HhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhccccc----------------------
Confidence            9998877788999999988653  8899999999999999999999999987632111                      


Q ss_pred             hccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC----
Q 010774          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV----  431 (501)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~----  431 (501)
                                     ..++        +++|.+++||+++++++.++|++ +++.+++.||+||++.+++......    
T Consensus       290 ---------------~~~~--------~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  345 (542)
T PRK06018        290 ---------------GLKL--------PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSK  345 (542)
T ss_pred             ---------------CCCc--------ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCcccccc
Confidence                           0111        37999999999999999999999 8999999999999987765432111    


Q ss_pred             ------CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          432 ------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       432 ------~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                            .....++|+|.+|++++|+| +++.+++.+.+..|||+++|++++.|||++.   ...+ .+|||+|||.
T Consensus       346 ~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl  417 (542)
T PRK06018        346 LPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDV  417 (542)
T ss_pred             CCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCE
Confidence                  01235789999999999999 8888887755568999999999999999842   2223 5899999995

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-47  Score=395.79  Aligned_cols=392  Identities=18%  Similarity=0.215  Sum_probs=302.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      +...++.++|.+.++.+|+++|++..    .     +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus         7 ~~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~   77 (540)
T PRK06164          7 PRADTLASLLDAHARARPDAVALIDE----D-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLF   77 (540)
T ss_pred             cCCCCHHHHHHHHHHhCCCCeEEecC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHH
Confidence            34468999999999999999999853    2     47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChh-----hhhhcCccCCCCccEEEEecCCChhhHHHhhhc
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  194 (501)
                      +||+++|++++|+++..+.+++.++++.++++++|++.+...     .+..........++.++.++.......      
T Consensus        78 la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  151 (540)
T PRK06164         78 LACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATP------  151 (540)
T ss_pred             HHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCC------
Confidence            999999999999999999999999999999999999876421     111111111223444544431110000      


Q ss_pred             CceEeeHHHHHhcC-CC---CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEE
Q 010774          195 GVSCFSWEEFLQLG-TL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF  270 (501)
Q Consensus       195 ~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l  270 (501)
                      ......+.++.... ..   .........+++++++|||||||.||+|.++|.++...+..+...+     .+..+++++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l  226 (540)
T PRK06164        152 APAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLL  226 (540)
T ss_pred             CCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence            00000011111100 00   0011223467899999999999999999999999999888776666     677899999


Q ss_pred             EecChHHHHHHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 010774          271 SFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAY  349 (501)
Q Consensus       271 ~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (501)
                      +.+|++|.+|+..++.++..|+++++.+. ++..+++.++++++|+++++|.+++.+++..                   
T Consensus       227 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-------------------  287 (540)
T PRK06164        227 AALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-------------------  287 (540)
T ss_pred             EcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-------------------
Confidence            99999999999888999999999998775 8999999999999999999999999987630                   


Q ss_pred             HHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEec-CCCCHHHHHHHHHhhCCCeeeeecccccCcceeccc
Q 010774          350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA-APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSL  428 (501)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG-~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~  428 (501)
                                         ..+.++        ++++.+.++| ++...++.+++.+. ++.+++.||+||++.+++...
T Consensus       288 -------------------~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~  339 (540)
T PRK06164        288 -------------------GERADF--------PSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQP  339 (540)
T ss_pred             -------------------cccCCC--------cceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccC
Confidence                               001112        2778777766 55566777777765 899999999999988766544


Q ss_pred             CCC--CcccCcccccc-cCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          429 ADV--FNMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       429 ~~~--~~~~~s~G~p~-p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      .+.  .....+.|.|+ ++++++|+|.++++.++.+  +.|||||+|++++.||+++++.+.+.| .+|||+|||.
T Consensus       340 ~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl  413 (540)
T PRK06164        340 ATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDG--ESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDL  413 (540)
T ss_pred             CCCCCcceeccCccccCCCeEEEEecCCCCcCCCCC--CeeEEEEecccccccccCCchhhhhcccCCCceecCCe
Confidence            332  12235678875 8999999994455555544  899999999999999999999999988 7899999994

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-47  Score=391.61  Aligned_cols=358  Identities=23%  Similarity=0.339  Sum_probs=287.3

Q ss_pred             HHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEE
Q 010774           50 CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY  129 (501)
Q Consensus        50 ~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  129 (501)
                      +.+++.+|+++|+.+.   ..+    +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   74 (488)
T PRK09088          2 AFHARLQPQRLAAVDL---ALG----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY   74 (488)
T ss_pred             chhhhhCCCceEEEec---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            4567889999999763   221    589999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcC-
Q 010774          130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-  208 (501)
Q Consensus       130 v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  208 (501)
                      +|+++..+.+++.++++.++++++|+++.......           ..                     ..++++.... 
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~~---------------------~~~~~~~~~~~  122 (488)
T PRK09088         75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------DV---------------------EDLAAFIASAD  122 (488)
T ss_pred             EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------cc---------------------cchhhhhhhcc
Confidence            99999999999999999999999999765332100           00                     0111111110 


Q ss_pred             -CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHH-HHH
Q 010774          209 -TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETH  286 (501)
Q Consensus       209 -~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~  286 (501)
                       ...........+++++++|||||||.||+|.++|++++.....+...+     ....+|++++.+|++|.+++.. ++.
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~  197 (488)
T PRK09088        123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP  197 (488)
T ss_pred             ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence             001111233467899999999999999999999999988777665444     5678999999999999999886 677


Q ss_pred             HHhcCcEEEEecC-CHHHHHHHHh--hhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCC
Q 010774          287 CIHKGCSIGFWRG-DVRYLMEDIQ--ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN  363 (501)
Q Consensus       287 ~l~~G~~~~~~~~-~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (501)
                      ++..|+++++.+. ++..++..+.  ++++|+++++|++++.+.+.                                  
T Consensus       198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~----------------------------------  243 (488)
T PRK09088        198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQ----------------------------------  243 (488)
T ss_pred             HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhC----------------------------------
Confidence            8999999988765 7888888886  48899999999999887641                                  


Q ss_pred             CcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCC--CCcccCccccc
Q 010774          364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD--VFNMIGTVGVP  441 (501)
Q Consensus       364 ~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~--~~~~~~s~G~p  441 (501)
                         +.....++        +++|.+++||++++....+.+.+. |+++++.||+||++.+.......  ....++++|+|
T Consensus       244 ---~~~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~  311 (488)
T PRK09088        244 ---PGFDAAAL--------RHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP  311 (488)
T ss_pred             ---cCcCcccc--------ccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence               11111112        279999999999999988888765 89999999999998764332211  12345889999


Q ss_pred             ccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       442 ~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      +|+++++|+| +++..++.+  +.|||+|+|++++.||+++++.+++.+ .+|||+|||-
T Consensus       312 ~~~~~~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl  368 (488)
T PRK09088        312 TPTVQTRVVD-DQGNDCPAG--VPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDI  368 (488)
T ss_pred             CCCcEEEEEC-CCCCCCcCC--CceEEEEECCccchhhcCChhhhhhhhcCCCCeeecce
Confidence            9999999999 888777655  899999999999999999999988877 6899999994

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.6e-47  Score=395.81  Aligned_cols=402  Identities=21%  Similarity=0.309  Sum_probs=305.2

Q ss_pred             CCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHH
Q 010774           37 ESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI  116 (501)
Q Consensus        37 ~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~  116 (501)
                      ..+....++.+.|+++++.+|+++|+.+.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|+++++
T Consensus        27 ~~~~~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~   97 (567)
T PRK06178         27 EYPHGERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFH   97 (567)
T ss_pred             CCCcCcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHH
Confidence            34455578999999999999999999875   3      47999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhH-HHhh---
Q 010774          117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-KEAE---  192 (501)
Q Consensus       117 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~---  192 (501)
                      ++++||+++|++++|++|..+..++.++++.++++++++++...+.+.+.....  ....++.......... ....   
T Consensus        98 ~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~  175 (567)
T PRK06178         98 IVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLPD  175 (567)
T ss_pred             HHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEecccccccccccccccc
Confidence            999999999999999999999999999999999999999988776654433221  2333333221110000 0000   


Q ss_pred             ------hcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCC
Q 010774          193 ------ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE  266 (501)
Q Consensus       193 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~  266 (501)
                            .....+..+.+................+++++|+|||||||.||+|.+||.+++..........    .....+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~  251 (567)
T PRK06178        176 SLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGED  251 (567)
T ss_pred             ccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCC
Confidence                  0000111121111111111122334578999999999999999999999999987665432211    256788


Q ss_pred             cEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010774          267 DTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (501)
Q Consensus       267 d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (501)
                      |++++.+|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++|.+.++|..+..+++.               
T Consensus       252 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~---------------  316 (567)
T PRK06178        252 SVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDH---------------  316 (567)
T ss_pred             cEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhC---------------
Confidence            99999999999999874 7788999999999875 999999999999999999999998877641               


Q ss_pred             HHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEE--EecCCCCHHHHHHHHHhhCCCeee-eecccccC
Q 010774          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML--SGAAPLPIHVEEFLRVTSGAPLTQ-GYGLTESC  421 (501)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~--~gG~~~~~~~~~~~~~~~~~~l~~-~yG~tE~~  421 (501)
                                            +...+.+++        +++.+.  ..++.+++++.+.|++.+|..++. .||+||++
T Consensus       317 ----------------------~~~~~~~l~--------~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~  366 (567)
T PRK06178        317 ----------------------PRFAEYDLS--------SLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETH  366 (567)
T ss_pred             ----------------------CCCCCCCcc--------hheeeeeccccccCCHHHHHHHHHHhCCccccccccccccc
Confidence                                  111112222        455543  446899999999999988877664 79999998


Q ss_pred             cceecccCC------CCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcc
Q 010774          422 SGCFTSLAD------VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWF  495 (501)
Q Consensus       422 ~~~~~~~~~------~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~  495 (501)
                      ..+......      ....++++|+|+||++++|+|.+++..++.+  ++|||+|+|++++.||+++++.++..+.||||
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g--~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~  444 (567)
T PRK06178        367 TCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLG--AEGEIVVRTPSLLKGYWNKPEATAEALRDGWL  444 (567)
T ss_pred             ccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCC--CceEEEEECCcccccccCChhhhhhcccCCce
Confidence            765443211      1223578999999999999994456666655  89999999999999999999999888889999


Q ss_pred             cCCCC
Q 010774          496 HTEVH  500 (501)
Q Consensus       496 ~TGD~  500 (501)
                      +|||.
T Consensus       445 ~TGDl  449 (567)
T PRK06178        445 HTGDI  449 (567)
T ss_pred             eecce
Confidence            99994

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=9.1e-48  Score=399.31  Aligned_cols=366  Identities=17%  Similarity=0.206  Sum_probs=276.4

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010774           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (501)
Q Consensus        44 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~  123 (501)
                      -+.+.|+++++++|+++|+++.   +  ++.++++||+||.++++++|++|.++  ++||+|+|+++|++++++++|||+
T Consensus         3 ~~~~~l~~~~~~~~~~~a~~~~---~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~   75 (525)
T PRK05851          3 ELAAALSDAMTASGRDLVVLDR---E--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAW   75 (525)
T ss_pred             hHHHHHHHHhcCCCCceEEeCC---C--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHH
Confidence            3889999999999999999864   3  23467999999999999999999988  799999999999999999999999


Q ss_pred             hcCCEEEEecCC--------CCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcC
Q 010774          124 SQAITYVPLYDT--------LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (501)
Q Consensus       124 ~~G~~~v~l~~~--------~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (501)
                      ++|++++ ++|.        ...+++..+++.++++++|++......+.....    .    +.+.+             
T Consensus        76 ~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~-------------  133 (525)
T PRK05851         76 LAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD-------------  133 (525)
T ss_pred             HcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc-------------
Confidence            9999865 3332        223455677899999999998765544322110    0    00000             


Q ss_pred             ceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCC-CCcEEEEecC
Q 010774          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS-EEDTYFSFLP  274 (501)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~-~~d~~l~~~p  274 (501)
                           +....... .........++++++|+|||||||.||||+++|.++++.+..+...+     .+. .+|++++.+|
T Consensus       134 -----~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~~p  202 (525)
T PRK05851        134 -----LATAAHTN-RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSWLP  202 (525)
T ss_pred             -----cccccccc-ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEcCC
Confidence                 00000000 01111223568999999999999999999999999999888776655     666 8899999999


Q ss_pred             hHHHHHHHHHHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 010774          275 LAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAY  349 (501)
Q Consensus       275 l~~~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (501)
                      ++|.+++..++.+++.|+++++.+.     ++..+++.++++++|++..+|.++..+.+.. .                 
T Consensus       203 l~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~-~-----------------  264 (525)
T PRK05851        203 LYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYA-R-----------------  264 (525)
T ss_pred             CccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhh-c-----------------
Confidence            9999999888899999999998762     6778999999999998755444444332210 0                 


Q ss_pred             HHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh---hCC---CeeeeecccccCcc
Q 010774          350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT---SGA---PLTQGYGLTESCSG  423 (501)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~---~~~---~l~~~yG~tE~~~~  423 (501)
                                        .....+++        ++|.+++||+++++++.++|.+.   +|.   .+++.||+||++.+
T Consensus       265 ------------------~~~~~~l~--------~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~  318 (525)
T PRK05851        265 ------------------RVSDVDLG--------ALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCA  318 (525)
T ss_pred             ------------------cccCCCHH--------HhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceE
Confidence                              01111222        78999999999999999998874   354   49999999999876


Q ss_pred             eecccCC--------------CCcccCcccccccCeEEEEeecCCCC-ccCCCCCCCceEEEecCCccccccCCcccchh
Q 010774          424 CFTSLAD--------------VFNMIGTVGVPMTTVEARLESVPEMG-YDALSSVPRGEICLRGNTLFSGYYKRPDLTEE  488 (501)
Q Consensus       424 ~~~~~~~--------------~~~~~~s~G~p~p~~~i~I~d~~~~~-~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~  488 (501)
                      ++.....              .....+++|+|+||++++|+| +++. +++.+  +.|||+|+|++++.|||++++.+  
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~~g--~~GEl~v~g~~~~~GY~~~~~~~--  393 (525)
T PRK05851        319 VTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGAAGVAGR--EIGEIEIRGASMMSGYLGQAPID--  393 (525)
T ss_pred             EEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCCccCCCC--CeEEEEEecCchhhccccCCccC--
Confidence            6543221              012346899999999999999 6664 34544  89999999999999999998653  


Q ss_pred             hhccCcccCCCC
Q 010774          489 VIVDGWFHTEVH  500 (501)
Q Consensus       489 ~~~dgw~~TGD~  500 (501)
                        .+|||+|||.
T Consensus       394 --~~~~~~TGDl  403 (525)
T PRK05851        394 --PDDWFPTGDL  403 (525)
T ss_pred             --CCCceeccce
Confidence              3799999995

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=7.9e-47  Score=395.98  Aligned_cols=399  Identities=22%  Similarity=0.320  Sum_probs=299.6

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      .++.+.|.+.+..+|+++|+++.   .      +.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~   90 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV   90 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            46889999999999999999864   2      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCcc------CCCCccEEEEecCCChhhHHHhhhcCc
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR------CCLYLKTIVSFANVSSSQKKEAEELGV  196 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (501)
                      +++|++++|+++..+.+++.++++.++++.+|+++...+........      .......++.+................
T Consensus        91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (567)
T PLN02479         91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK  170 (567)
T ss_pred             HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence            99999999999999999999999999999999988765443221110      001122344443221100000000111


Q ss_pred             eEeeHHHHHhcCCCCCC-CCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecCh
Q 010774          197 SCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL  275 (501)
Q Consensus       197 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  275 (501)
                      ....+++++........ ....+.+++++++|||||||.||+|.+||.+++.........+     .+..++++++.+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~  245 (567)
T PLN02479        171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM  245 (567)
T ss_pred             CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence            23346666544311111 1122334677899999999999999999999876665544443     66788999999999


Q ss_pred             HHHHHHHHHH-HHHhcCcEEEEecCCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          276 AHIYDQIIET-HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       276 ~~~~g~~~~~-~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      +|..++...+ ..++.|.++++...++..+++.++++++|+++++|.++..+++.....                     
T Consensus       246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---------------------  304 (567)
T PLN02479        246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSE---------------------  304 (567)
T ss_pred             hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhc---------------------
Confidence            9999977543 456777777666669999999999999999999999999887532100                     


Q ss_pred             hhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCC----
Q 010774          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD----  430 (501)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~----  430 (501)
                                     ...++        ++++.++++|+++++.+.++|.+. +.++++.||+||+++.++.....    
T Consensus       305 ---------------~~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~  360 (567)
T PLN02479        305 ---------------TILPL--------PRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD  360 (567)
T ss_pred             ---------------ccccc--------cceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence                           00011        378999999999999999999876 88999999999986544322110    


Q ss_pred             ------CCcccCcccccccCeE-EEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          431 ------VFNMIGTVGVPMTTVE-ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       431 ------~~~~~~s~G~p~p~~~-i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                            ......+.|.+.+|++ ++|+|.+++.+++.+.+++|||+++|++++.|||++++.+++.|.+|||+|||.
T Consensus       361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl  437 (567)
T PLN02479        361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDL  437 (567)
T ss_pred             ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceeccee
Confidence                  0111246788888886 889884455656554446899999999999999999999999999999999995

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-46  Score=390.61  Aligned_cols=368  Identities=20%  Similarity=0.227  Sum_probs=291.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ...++.+.|.++++.+|+++|+++.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l  103 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF  103 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3578999999999999999999864   3      379999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEee
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (501)
                      ||+++|++++|+++.++.+++.++++.++++.+++++.....+....       ..++.++....               
T Consensus       104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~---------------  161 (516)
T PRK13383        104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA---------------  161 (516)
T ss_pred             HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh---------------
Confidence            99999999999999999999999999999999999887655442211       11222211100               


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHH--hhcceeeeeccccCCCCcEEEEecChHHH
Q 010774          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (501)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~--~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (501)
                        .. . .   ....+...++.++|+|||||||.||+|.++|.......  ......+     .+..+|+++..+|++|.
T Consensus       162 --~~-~-~---~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~pl~h~  229 (516)
T PRK13383        162 --GA-E-E---SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-----RLRTGSRISVAMPMFHG  229 (516)
T ss_pred             --hh-h-c---CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-----ccCCCCeEEEecCCcch
Confidence              00 0 0   00111223556799999999999999999997432111  1111222     67789999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          279 YDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      +++...+.++..|+++++... ++..+++.++++++|.+.++|.++..+.+.....                        
T Consensus       230 ~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------  285 (516)
T PRK13383        230 LGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRV------------------------  285 (516)
T ss_pred             hhHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccc------------------------
Confidence            999888889999999987764 9999999999999999999999998886521100                        


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCc
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT  437 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s  437 (501)
                                 ....++        +++|.+++||+++++++.++|.+.++..+++.||+||++..+...........++
T Consensus       286 -----------~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  346 (516)
T PRK13383        286 -----------RARNPL--------PQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPET  346 (516)
T ss_pred             -----------cccCCC--------CceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCc
Confidence                       000011        3799999999999999999999999999999999999987665444333344589


Q ss_pred             ccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       438 ~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +|+|+|+++++|+| +++.+++.+  +.|||+|+|+.++.||++++.   ..+.||||+|||.
T Consensus       347 ~G~~~~~~~~~i~d-~~~~~~~~g--~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl  403 (516)
T PRK13383        347 VGKPVAGCPVRILD-RNNRPVGPR--VTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDM  403 (516)
T ss_pred             ccCCCCCcEEEEEC-CCCCCCCCC--CceEEEEecCcccccccCCch---hheecCceeccee
Confidence            99999999999999 888766655  899999999999999998753   3346899999995

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.1e-46  Score=391.33  Aligned_cols=398  Identities=20%  Similarity=0.307  Sum_probs=305.5

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      +.++.+.|+++++.+|+++|+++.    +     +.+||.||.++++++|.+|.+ .|+++||+|+++++|++++++++|
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   92 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM----G-----EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF   92 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC----C-----ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            567999999999999999999864    2     479999999999999999984 899999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhh--HH---------
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ--KK---------  189 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~---------  189 (501)
                      ||+++|++++|++|..+.+++.++++.++++.++++.+....+.+....  .....++.........  ..         
T Consensus        93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (560)
T PRK08974         93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKY  170 (560)
T ss_pred             HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhh
Confidence            9999999999999999999999999999999999987654443322211  1112222111000000  00         


Q ss_pred             ----HhhhcCceEeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCC
Q 010774          190 ----EAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS  264 (501)
Q Consensus       190 ----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~  264 (501)
                          ..+........+.+...... ..........+++++|+|||||||.||+|.++|.++...+......+..  ....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~  248 (560)
T PRK08974        171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHP  248 (560)
T ss_pred             cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCC
Confidence                00000011122333332221 1111222457899999999999999999999999998876543322210  0234


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhH
Q 010774          265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS  341 (501)
Q Consensus       265 ~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  341 (501)
                      .++.++..+|++|.+++.. .+.++..|+++++...  ++..+++.++++++|.+.++|.+++.+.+..           
T Consensus       249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-----------  317 (560)
T PRK08974        249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNE-----------  317 (560)
T ss_pred             CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCc-----------
Confidence            5678888999999999775 6677889998777643  8889999999999999999999999987521           


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccC
Q 010774          342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC  421 (501)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~  421 (501)
                                                .....++        +++|.+++||+++++.+.++|++.+|+.+++.||+||++
T Consensus       318 --------------------------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~  363 (560)
T PRK08974        318 --------------------------EFQELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS  363 (560)
T ss_pred             --------------------------CcccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence                                      1111122        279999999999999999999998899999999999998


Q ss_pred             cceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       422 ~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      .+++....+.....+++|.|+|+++++|+| +++.+++.+  +.|||+++|+.++.||+++++.+++.|.+|||+|||.
T Consensus       364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl  439 (560)
T PRK08974        364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPG--EPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDI  439 (560)
T ss_pred             ceeeccCCCCcccCCccccCcCCCEEEEEC-CCCCCCCCC--CceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCE
Confidence            877665444444458899999999999999 888877766  8999999999999999999999988888999999995

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=6.3e-47  Score=391.77  Aligned_cols=368  Identities=18%  Similarity=0.225  Sum_probs=299.0

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010774           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (501)
Q Consensus        44 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~  123 (501)
                      ++.+.|.+.++.+|+++|+.+.   +      +.+||+||.+++.++|+.|.+.|+++||+|+++++|+.++++++|||+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~   71 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI   71 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            5789999999999999999764   3      479999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHH
Q 010774          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (501)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (501)
                      ++|++++|+++.++.+++..+++..+++.++++.+.......        .. ++.+..                  .+.
T Consensus        72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~~-~~~~~~------------------~~~  124 (502)
T TIGR01734        72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------TQ-IITLSA------------------LEQ  124 (502)
T ss_pred             HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------Cc-eEEchH------------------hhh
Confidence            999999999999999999999999999999998765332210        11 111110                  111


Q ss_pred             HHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHH
Q 010774          204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII  283 (501)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  283 (501)
                      +..............+++.++++|||||||.||+|.++|.++...+.+....+     ....+++++...|++|..++..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~  199 (502)
T TIGR01734       125 AETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVMD  199 (502)
T ss_pred             hhhhcCCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHHH
Confidence            11111111111234568899999999999999999999999998888765554     7788999999999999998888


Q ss_pred             HHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccC
Q 010774          284 ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (501)
Q Consensus       284 ~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (501)
                      ++.++..|+++++.+.    ++..+++.+.+++++.+.++|.+++.++...                             
T Consensus       200 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~-----------------------------  250 (502)
T TIGR01734       200 LYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDP-----------------------------  250 (502)
T ss_pred             HHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcc-----------------------------
Confidence            8899999999998764    7899999999999999999999998765411                             


Q ss_pred             CCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCC----Ccc
Q 010774          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV----FNM  434 (501)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~----~~~  434 (501)
                              .....++        ++++.++++|++++++..+++.+.+ ++.+++.||+||+++.++......    ...
T Consensus       251 --------~~~~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  314 (502)
T TIGR01734       251 --------NFNQENY--------PHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYP  314 (502)
T ss_pred             --------ccccccC--------CcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCC
Confidence                    0111111        3789999999999999999999987 789999999999986554332211    223


Q ss_pred             cCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh--cc--CcccCCCC
Q 010774          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VD--GWFHTEVH  500 (501)
Q Consensus       435 ~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~d--gw~~TGD~  500 (501)
                      ..++|++.|+++++|+| +++..++.+  +.|||+|+|+.++.||+++++.+.+.|  .+  +||+|||.
T Consensus       315 ~~~vg~~~~~~~~~i~~-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDl  381 (502)
T TIGR01734       315 RLPIGFAKPDMNLFIMD-EEGEPLPEG--EKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDA  381 (502)
T ss_pred             ccccccccCCCEEEEEC-CCCCCCCCC--CeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCE
Confidence            36799999999999999 888777765  899999999999999999999988876  23  59999995

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=3.6e-47  Score=468.08  Aligned_cols=386  Identities=21%  Similarity=0.251  Sum_probs=303.5

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      +.|+.++|+++++.+|+++|+.+.   ++..+..+.+||+||.++++++|+.|++.| ++||+|+|+++|++++++++||
T Consensus         8 ~~tl~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~lTy~el~~~~~~lA~~L~~~~-~~gd~V~i~~~~s~~~~~~~la   83 (4334)
T PRK05691          8 PLTLVQALQRRAAQTPDRLALRFL---ADDPGEGVVLSYRDLDLRARTIAAALQARA-SFGDRAVLLFPSGPDYVAAFFG   83 (4334)
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEe---cCCCCcceEeeHHHHHHHHHHHHHHHHhcC-CCCCEEEEEcCCCHHHHHHHHH
Confidence            368999999999999999999986   554555679999999999999999998764 9999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCH-----HHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCc
Q 010774          122 CNSQAITYVPLYDTLGA-----NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (501)
                      |+++|++++|++|..+.     +++.++++.++++++|++....+.+.............++.++....           
T Consensus        84 ~l~aG~~~vp~~p~~~~~~~~~~rl~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  152 (4334)
T PRK05691         84 CLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDP-----------  152 (4334)
T ss_pred             HHHhCceEeccCCcccccccHHHHHHHHHHhCCCCEEEECHHHHHHHHhhhhcccccCceEEEcccccc-----------
Confidence            99999999999997654     46999999999999999987665543322111112233333322110           


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccC--CCCcEEEEecC
Q 010774          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSFLP  274 (501)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~~p  274 (501)
                                ............++++++|+|||||||.||||++||+++++....+...+     .+  ..+|++++.+|
T Consensus       153 ----------~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKGV~lsH~~l~~~~~~~~~~~-----~~~~~~~d~~l~~lp  217 (4334)
T PRK05691        153 ----------ALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGF-----GIDLNPDDVIVSWLP  217 (4334)
T ss_pred             ----------cccccccCCCCCcCCeEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHh-----CCCCCCCceEEEecc
Confidence                      00011112335678999999999999999999999999999887765544     44  78999999999


Q ss_pred             hHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 010774          275 LAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA  348 (501)
Q Consensus       275 l~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (501)
                      ++|.+|+.. ++.+++.|+++++.+.     +|..|++.++++++|+...+|..+..+.+..                  
T Consensus       218 ~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~~t~~~~~~~~~~l~~~~~------------------  279 (4334)
T PRK05691        218 LYHDMGLIGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYGGTISGGPDFAYRLCSERV------------------  279 (4334)
T ss_pred             chhhhHHHHHHHHHHHCCCEEEEeCcHHHhhCHHHHHHHHHHcCCEEecCCchHHHHHHHhc------------------
Confidence            999999885 7889999999998764     7899999999999998777666665543311                  


Q ss_pred             HHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh---C---CCeeeeecccccCc
Q 010774          349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS---G---APLTQGYGLTESCS  422 (501)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~---~---~~l~~~yG~tE~~~  422 (501)
                                      .....+.++++        ++|.+++|||++++++.++|.+.+   |   ..++++||+||++.
T Consensus       280 ----------------~~~~~~~~~l~--------~lr~~~~gge~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~  335 (4334)
T PRK05691        280 ----------------SESALERLDLS--------RWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFFASYGLAEATL  335 (4334)
T ss_pred             ----------------CHHHhcccccc--------cceEEEECcccCCHHHHHHHHHHhhhcCCCccccccCcchhhhee
Confidence                            01122333443        899999999999999999998876   2   25999999999988


Q ss_pred             ceecccCCC---------------------CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccC
Q 010774          423 GCFTSLADV---------------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK  481 (501)
Q Consensus       423 ~~~~~~~~~---------------------~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~  481 (501)
                      +++......                     ....+++|+|+||++++|+|.+++..++.|  ++|||||+||++++|||+
T Consensus       336 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~Ivd~~~~~~~~~g--~~GEl~v~Gp~v~~GY~~  413 (4334)
T PRK05691        336 FVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVDPQSLEVLGDN--RVGEIWASGPSIAHGYWR  413 (4334)
T ss_pred             eeecccCCCCCceEeecHhHHhcCCccCCCCCceeccCCccCCCEEEEEcCCCCcCCCCC--CeEEEEecCCccchhhcC
Confidence            776432210                     112358999999999999994456666655  899999999999999999


Q ss_pred             Ccccchhhh--ccC--cccCCCCC
Q 010774          482 RPDLTEEVI--VDG--WFHTEVHR  501 (501)
Q Consensus       482 ~~~~~~~~~--~dg--w~~TGD~~  501 (501)
                      +|+.|++.|  .+|  ||||||-+
T Consensus       414 ~~~~T~~~f~~~~g~~w~rTGDlg  437 (4334)
T PRK05691        414 NPEASAKTFVEHDGRTWLRTGDLG  437 (4334)
T ss_pred             ChhhhHHHhhcCCCCceeecCCeE
Confidence            999999998  345  99999953

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.8e-46  Score=389.36  Aligned_cols=370  Identities=17%  Similarity=0.170  Sum_probs=288.4

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCchhHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV-NPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv-~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      .|+.++|..++  .|+++|+++.   +      ..+||.||.++++++|+.|.+.|+ .+||+|+++++|+++++++++|
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA   71 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA   71 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            46888888764  7999999865   3      479999999999999999999999 8999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|++|.++.+++..+++.++++++|++.+....+.+..   .... .++.++..                .+
T Consensus        72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~-~~i~~~~~----------------~~  131 (540)
T PRK13388         72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGV-RVLDVDTP----------------AY  131 (540)
T ss_pred             HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCc-eEEEccch----------------hh
Confidence            9999999999999999999999999999999999877655443221   1122 22222211                12


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                      .+++.......+.....++++++++|||||||.||||.++|.++......+...+     ++..+|+++..+|++|.+++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~  206 (540)
T PRK13388        132 AELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNAV  206 (540)
T ss_pred             hhhhccccCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcch
Confidence            2232211111112234578999999999999999999999999998887766665     77889999999999999988


Q ss_pred             HH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccC
Q 010774          282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (501)
Q Consensus       282 ~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (501)
                      .. ++.++..|+++++.+. ++..+++.++++++|++..+|..+..+++..                             
T Consensus       207 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~-----------------------------  257 (540)
T PRK13388        207 MAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATP-----------------------------  257 (540)
T ss_pred             HHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCC-----------------------------
Confidence            75 5568999999988764 8999999999999999999999998876410                             


Q ss_pred             CCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCccc
Q 010774          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVG  439 (501)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G  439 (501)
                              .......        .+++. ++ |++++++..+.|.+.+++++++.||+||++.+++...   ....+++|
T Consensus       258 --------~~~~~~~--------~~l~~-~~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~vG  316 (540)
T PRK13388        258 --------ERPDDAD--------NPLRV-AF-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP---GTPPGSIG  316 (540)
T ss_pred             --------CCccccc--------cceEE-EE-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC---CCCCCCCC
Confidence                    0000000        25663 33 6667888889998888999999999999987665432   22348999


Q ss_pred             ccccCeEEE-----------EeecCCCCccCCCCCCCceEEEe-cCCccccccCCcccchhhhccCcccCCCC
Q 010774          440 VPMTTVEAR-----------LESVPEMGYDALSSVPRGEICLR-GNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       440 ~p~p~~~i~-----------I~d~~~~~~~~~~~~~~Gei~v~-g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +|++|+++.           ++| ++|..+. ..+++|||+++ |++++.||+++++.+.+.|.+|||+|||.
T Consensus       317 ~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~-~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~  387 (540)
T PRK13388        317 RGAPGVAIYNPETLTECAVARFD-AHGALLN-ADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDL  387 (540)
T ss_pred             CCCCCcEEEcCCCCccccceecc-Ccccccc-CCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccce
Confidence            999997653           333 3333222 12368999998 99999999999999999888999999995

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.1e-46  Score=459.94  Aligned_cols=372  Identities=19%  Similarity=0.203  Sum_probs=308.1

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.+.|.++++.+|+++|+++.   +      +.+||+||.++++++|+.|.++|+++|++|++++++++++++++||
T Consensus      1573 ~~~~~~~~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~la 1643 (3956)
T PRK12467       1573 ARLVHQLIEDQAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLA 1643 (3956)
T ss_pred             cccHHHHHHHHHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHH
Confidence            357999999999999999999875   3      4899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|++|.++.+++.++++.+++++++++......+...     ... .++.++...                 
T Consensus      1644 vlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~----------------- 1700 (3956)
T PRK12467       1644 ILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-----DGL-RSLVLDQED----------------- 1700 (3956)
T ss_pred             hhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-----cCC-cEEEecccc-----------------
Confidence            999999999999999999999999999999999987654433110     011 222222111                 


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                       +++.......+.....++++++|+|||||||.||||+++|.++++.+.++...+     ++..+|++++..|++|..++
T Consensus      1701 -~~~~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 1774 (3956)
T PRK12467       1701 -DWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-----QLSAADVVLQFTSFAFDVSV 1774 (3956)
T ss_pred             -chhccCCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-----CCCcccEEEEecCccHHHHH
Confidence             111111112222344678999999999999999999999999999998877666     78899999999999999998


Q ss_pred             HHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      ..++.+|..|+++++.+.    ++..+++.|+++++|++.++|++++.+++....                         
T Consensus      1775 ~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------------------- 1829 (3956)
T PRK12467       1775 WELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQ------------------------- 1829 (3956)
T ss_pred             HHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccc-------------------------
Confidence            888999999999999764    789999999999999999999999998752000                         


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCC---C-C
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLAD---V-F  432 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~---~-~  432 (501)
                                   ..++        ++||.+++|||++++++.+.|.+.+ +..++|.||+||++..++.....   . .
T Consensus      1830 -------------~~~~--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~ 1888 (3956)
T PRK12467       1830 -------------VEHP--------LSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEG 1888 (3956)
T ss_pred             -------------cccC--------CCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEecccccccc
Confidence                         0001        3899999999999999999998876 57799999999999876654332   1 1


Q ss_pred             cccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-c-------cCcccCCCC
Q 010774          433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V-------DGWFHTEVH  500 (501)
Q Consensus       433 ~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~-------dgw~~TGD~  500 (501)
                      ....++|+|++|++++|+| ++++++|.|  .+|||+|+|+++++||+|+|+.|++.| .       ++||+|||.
T Consensus      1889 ~~~~~iG~p~~~~~~~vld-~~~~~vp~G--~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl 1961 (3956)
T PRK12467       1889 RDSVPIGQPIANLSTYILD-ASLNPVPIG--VAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDL 1961 (3956)
T ss_pred             CCCCCcccccCCCEEEEEC-CCCCCCCCC--CceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccce
Confidence            2246899999999999999 888888876  899999999999999999999999988 2       249999995

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=6.2e-47  Score=469.12  Aligned_cols=371  Identities=20%  Similarity=0.239  Sum_probs=306.9

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.+.|.++++.+|+++|+++.   +      +.+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++||
T Consensus      2002 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lA 2072 (5163)
T PRK12316       2002 GPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLA 2072 (5163)
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            357999999999999999999875   4      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|++|.++.+++.++++.+++++++++.+....+...     ... ..+.+...                  
T Consensus      2073 il~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~-~~~~~~~~------------------ 2128 (5163)
T PRK12316       2073 VLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGV-ARLPLDRD------------------ 2128 (5163)
T ss_pred             HHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----ccc-ceEeccch------------------
Confidence            999999999999999999999999999999999988655433110     011 11111110                  


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                      .. ........+.....++++++|+|||||||.||||+++|+++.+.+......+     .+..+|+++...|++|..++
T Consensus      2129 ~~-~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 2202 (5163)
T PRK12316       2129 AE-WADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFDGAH 2202 (5163)
T ss_pred             hh-hhccCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHHHHH
Confidence            00 0111111122345678999999999999999999999999999998877766     78899999999999999888


Q ss_pred             HHHHHHHhcCcEEEEecC---CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhcc
Q 010774          282 IIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (501)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (501)
                      ..++.+|+.|+++++.+.   ++..+++.++++++|+++++|++++.+.+.....                         
T Consensus      2203 ~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------------------- 2257 (5163)
T PRK12316       2203 EQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD------------------------- 2257 (5163)
T ss_pred             HHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc-------------------------
Confidence            789999999999977653   7899999999999999999999999987532110                         


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCCCc----
Q 010774          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFN----  433 (501)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~~----  433 (501)
                                  .         ...+||.+++|||++++++.++|.+.+ +..++|.||+||++..++........    
T Consensus      2258 ------------~---------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 2316 (5163)
T PRK12316       2258 ------------G---------RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGA 2316 (5163)
T ss_pred             ------------c---------CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccCC
Confidence                        0         002799999999999999999999876 67899999999998876654332211    


Q ss_pred             ccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-c-------cCcccCCCC
Q 010774          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V-------DGWFHTEVH  500 (501)
Q Consensus       434 ~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~-------dgw~~TGD~  500 (501)
                      ...++|+|++|++++|+| ++++.+|.|  ++|||||+|+++++||+|+|+.|++.| .       ++||+|||.
T Consensus      2317 ~~~~iG~p~~~~~~~i~d-~~~~~vp~g--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl 2388 (5163)
T PRK12316       2317 AYVPIGRALGNRRAYILD-ADLNLLAPG--MAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDL 2388 (5163)
T ss_pred             CcCCcccccCCCEEEEEC-CCCCCCCCC--CeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccE
Confidence            125799999999999999 888888776  999999999999999999999999988 2       259999995

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-46  Score=394.69  Aligned_cols=388  Identities=19%  Similarity=0.237  Sum_probs=296.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch
Q 010774           34 GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP  113 (501)
Q Consensus        34 ~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~  113 (501)
                      .++....++.++.++|+..++.+|+..++ .     .++...+.+||.||..+++++|++|.++|+++||+|+++++|++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~   85 (579)
T PRK09192         12 SLPRRYADFPTLVEALDYAALGEAGMNFY-D-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDG   85 (579)
T ss_pred             cccccccchhhHHHHHHHhhccCCceEEE-e-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCch
Confidence            34444467789999999999998865543 2     22233478999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCEEEEecCCCC-------HHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChh
Q 010774          114 EWIIAMEACNSQAITYVPLYDTLG-------ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS  186 (501)
Q Consensus       114 ~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (501)
                      +++++++||+++|++++|+++..+       .+++.++++.++++++|+++...+.+.+....    ...+.        
T Consensus        86 ~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~----~~~~~--------  153 (579)
T PRK09192         86 DFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHG----NPLLH--------  153 (579)
T ss_pred             hHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcc----ccccc--------
Confidence            999999999999999999986443       68999999999999999988765554332211    00110        


Q ss_pred             hHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcce-eeeeccccCCC
Q 010774          187 QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ-MFVVTGKVCSE  265 (501)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~-~~~~~~~~~~~  265 (501)
                                 ...++++...............+++++++|||||||.||+|+++|++++..+..... .+     ....
T Consensus       154 -----------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~~~  217 (579)
T PRK09192        154 -----------VLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KVRP  217 (579)
T ss_pred             -----------eeehhhhcccCCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cCCC
Confidence                       112222222111111222345688999999999999999999999999988877655 44     6788


Q ss_pred             CcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCCh
Q 010774          266 EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA  339 (501)
Q Consensus       266 ~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  339 (501)
                      +|+++..+|++|.+++.. ++.++..|+++++.+.     ++..+++.+.++++++++..|.++..+.....        
T Consensus       218 ~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~--------  289 (579)
T PRK09192        218 GDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVN--------  289 (579)
T ss_pred             CCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhc--------
Confidence            999999999999999885 6678999999877652     68899999999999877765554544432110        


Q ss_pred             hHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC------CCeee
Q 010774          340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQ  413 (501)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~------~~l~~  413 (501)
                                                ......++++        ++|.+++||+++++.+.+.|.+.++      ..+++
T Consensus       290 --------------------------~~~~~~~~l~--------~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~  335 (579)
T PRK09192        290 --------------------------SKDLAELDLS--------CWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMP  335 (579)
T ss_pred             --------------------------cccccccchh--------hhheeEecCccCCHHHHHHHHHHHHhcCCChhhccc
Confidence                                      0111223344        8999999999999999999988763      35999


Q ss_pred             eecccccCcceecccCCCC---------------------------cccCcccccccCeEEEEeecCCCCccCCCCCCCc
Q 010774          414 GYGLTESCSGCFTSLADVF---------------------------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG  466 (501)
Q Consensus       414 ~yG~tE~~~~~~~~~~~~~---------------------------~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~G  466 (501)
                      .||+||++++++.......                           ....++|+|+|+++++|+| +++..++.+  +.|
T Consensus       336 ~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g--~~G  412 (579)
T PRK09192        336 SYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPER--VVG  412 (579)
T ss_pred             ccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCC--CEE
Confidence            9999999876654332110                           1125799999999999999 888777655  899


Q ss_pred             eEEEecCCccccccCCcccchhhh-ccCcccCCCCC
Q 010774          467 EICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVHR  501 (501)
Q Consensus       467 ei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~~  501 (501)
                      ||+++|++++.|||++ +.+.+.+ .||||+|||.+
T Consensus       413 el~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg  447 (579)
T PRK09192        413 HICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLG  447 (579)
T ss_pred             EEEecCCchhhhhcCC-ccccccccCCceeecccee
Confidence            9999999999999999 5566655 78999999963

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.3e-46  Score=466.24  Aligned_cols=371  Identities=20%  Similarity=0.223  Sum_probs=308.5

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.++|.++++++|+++|+++.   +      +.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus       510 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la  580 (5163)
T PRK12316        510 QRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA  580 (5163)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999875   3      4899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|++|.++.+++.++++.+++++++++......+..      .....++.++...                 
T Consensus       581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~-----------------  637 (5163)
T PRK12316        581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL------AAGVQVLDLDRPA-----------------  637 (5163)
T ss_pred             HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc------ccCceEEEecCcc-----------------
Confidence            99999999999999999999999999999999998765433211      0011222222111                 


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                       .+..............++++++|+|||||||.||||+++|+++++.+.++...+     ++..+|++++.+|++|..++
T Consensus       638 -~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~~~  711 (5163)
T PRK12316        638 -AWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDVSV  711 (5163)
T ss_pred             -hhhccCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHHHH
Confidence             011111112222334678999999999999999999999999999999887776     78899999999999999998


Q ss_pred             HHHHHHHhcCcEEEEec----CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          282 IIETHCIHKGCSIGFWR----GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       282 ~~~~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      ..++.+|+.|+++++.+    .++..+++.++++++|++.++|++++.+++..                           
T Consensus       712 ~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---------------------------  764 (5163)
T PRK12316        712 WEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDE---------------------------  764 (5163)
T ss_pred             HHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcc---------------------------
Confidence            88999999999999975    38999999999999999999999999886410                           


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccC-CCCccc
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLA-DVFNMI  435 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~-~~~~~~  435 (501)
                                ...  ++        +++|.+++|||++++++.++|.+.+ +++++|.||+||++..++.... ......
T Consensus       765 ----------~~~--~~--------~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  824 (5163)
T PRK12316        765 ----------DVA--SC--------TSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDS  824 (5163)
T ss_pred             ----------ccc--cC--------CCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCC
Confidence                      000  11        3899999999999999999997765 7889999999999865544332 223345


Q ss_pred             CcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-c------cCcccCCCC
Q 010774          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V------DGWFHTEVH  500 (501)
Q Consensus       436 ~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~------dgw~~TGD~  500 (501)
                      .++|+|++|++++|+| ++++++|.|  ++|||+|+|++++.||+++|+.|++.| .      ++||+|||.
T Consensus       825 ~~iG~p~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl  893 (5163)
T PRK12316        825 VPIGRPIANLACYILD-ANLEPVPVG--VLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDL  893 (5163)
T ss_pred             CCCccccCCCEEEEEC-CCCCCCCCC--CceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCcc
Confidence            7899999999999999 888887766  899999999999999999999999988 2      359999995

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=3e-46  Score=460.01  Aligned_cols=373  Identities=18%  Similarity=0.192  Sum_probs=309.7

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.+.|.++++++|+++|+++.   ++      .+||+||.++++++|+.|.+.|+++|++|+|++++++++++++||
T Consensus      3719 ~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~la 3789 (4334)
T PRK05691       3719 EQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVG 3789 (4334)
T ss_pred             ccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            458999999999999999999986   53      799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCC-CCccEEEEecCCChhhHHHhhhcCceEee
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (501)
                      ++++|++++||+|.++.+++.++++.+++++++++............... .....++....                  
T Consensus      3790 vlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 3851 (4334)
T PRK05691       3790 SFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE------------------ 3851 (4334)
T ss_pred             HHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc------------------
Confidence            99999999999999999999999999999999999876543222111110 01111111111                  


Q ss_pred             HHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       201 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                         ..... ....+.....+++++||+|||||||.||||+++|+++++.+.+....+     .+..+|+++...++.+..
T Consensus      3852 ---~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd~ 3923 (4334)
T PRK05691       3852 ---VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFDI 3923 (4334)
T ss_pred             ---cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchhH
Confidence               11001 111122334678999999999999999999999999999998877766     889999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010774          280 DQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (501)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (501)
                      ++..++.+++.|+++++.+.    ++..+++.++++++|++.++|++++.++.....                       
T Consensus      3924 s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~----------------------- 3980 (4334)
T PRK05691       3924 SVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ----------------------- 3980 (4334)
T ss_pred             HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc-----------------------
Confidence            99889999999999998864    789999999999999999999999887642100                       


Q ss_pred             hccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCCCc-
Q 010774          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFN-  433 (501)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~~-  433 (501)
                                       .+        ++||.+++|||++++++.++|.+.+ +++++|.||+||++..++........ 
T Consensus      3981 -----------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~ 4035 (4334)
T PRK05691       3981 -----------------AL--------DGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAST 4035 (4334)
T ss_pred             -----------------cC--------CCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccc
Confidence                             01        3799999999999999999998875 78999999999999877654433221 


Q ss_pred             --ccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-c-------cCcccCCCC
Q 010774          434 --MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V-------DGWFHTEVH  500 (501)
Q Consensus       434 --~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~-------dgw~~TGD~  500 (501)
                        ....+|+|++|+++.|+| ++++.+|.|  .+|||+|+|+++++||+|+|+.|++.| .       ++||+|||-
T Consensus      4036 ~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g--~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl 4109 (4334)
T PRK05691       4036 RGSYLPIGSPTDNNRLYLLD-EALELVPLG--AVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDL 4109 (4334)
T ss_pred             cCCcCCCCCccCCCEEEEEC-CCCCCCCCC--CceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcc
Confidence              234699999999999999 888888877  899999999999999999999999988 2       469999995

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-45  Score=381.71  Aligned_cols=368  Identities=18%  Similarity=0.232  Sum_probs=291.0

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ..++.+.|.+++.  ++++++++.    +     +.+||.||.++++++|++|.++ |+++|++|+++++|+++++++++
T Consensus         4 ~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~l   72 (529)
T PRK07867          4 APTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLG   72 (529)
T ss_pred             cccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHH
Confidence            4678999988875  788998864    3     5899999999999999999997 89999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEee
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (501)
                      ||+++|++++|+++..+.+++.++++.++++++|++++....+....    ... .++....                ..
T Consensus        73 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~~  131 (529)
T PRK07867         73 AAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------PA  131 (529)
T ss_pred             HHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------cc
Confidence            99999999999999999999999999999999999987665432221    111 2222211                11


Q ss_pred             HHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       201 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                      +.+++... ..........++++++|+|||||||.||+|+++|+++......+...+     ++..+|+++..+|++|.+
T Consensus       132 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~  206 (529)
T PRK07867        132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHSN  206 (529)
T ss_pred             HHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHHH
Confidence            33333322 111223344678999999999999999999999999998888776665     677899999999999999


Q ss_pred             HHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          280 DQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       280 g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      ++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+.+..++...+                          
T Consensus       207 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~--------------------------  260 (529)
T PRK07867        207 AVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPE--------------------------  260 (529)
T ss_pred             HHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC--------------------------
Confidence            9875 6678999999988765 89999999999999999999999988764110                          


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCc
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT  437 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s  437 (501)
                              ..  ..         ..+++| +++||+.+++.. ++|.+.+|+++++.||+||++++++...   ....++
T Consensus       261 --------~~--~~---------~~~~lr-~~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~---~~~~~~  316 (529)
T PRK07867        261 --------RP--DD---------ADNPLR-IVYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTP---DTPPGA  316 (529)
T ss_pred             --------cc--cc---------cccceE-EEecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCC---CCCCCC
Confidence                    00  00         002677 456888887664 6677778999999999999986654322   123478


Q ss_pred             ccccccCeEEEEeecCCCCccCCCCCC------------CceEEE-ecCCccccccCCcccchhhhccCcccCCCC
Q 010774          438 VGVPMTTVEARLESVPEMGYDALSSVP------------RGEICL-RGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       438 ~G~p~p~~~i~I~d~~~~~~~~~~~~~------------~Gei~v-~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +|.|+++  ++|+|.+++..++.+  +            .|||++ +|++++.||+++++.+.+.+.+|||+|||.
T Consensus       317 ~g~~~~~--~~i~~~~~~~~~~~g--~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~  388 (529)
T PRK07867        317 LGPLPPG--VAIVDPDTGTECPPA--EDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDL  388 (529)
T ss_pred             cCCCCCC--EEEEECCCCCCCCCC--ccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccE
Confidence            9999999  677873455555554  5            899999 999999999999999998889999999994

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.3e-45  Score=382.13  Aligned_cols=369  Identities=19%  Similarity=0.209  Sum_probs=299.7

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      +++.+.|+++++.+|+++++.+.   +      +.+||.||.++++++|.+|.+.|+.+||+|+++++|+.+++++++||
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~   72 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGA   72 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            56889999999999999998764   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHH
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (501)
                      +++|++++|+++.++.+++..+++..++++++++++.....        ... ..+...                  .+.
T Consensus        73 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~------------------~~~  125 (503)
T PRK04813         73 VKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-PVITLD------------------ELK  125 (503)
T ss_pred             HHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-cEEehH------------------Hhh
Confidence            99999999999999999999999999999999987641100        001 111110                  011


Q ss_pred             HHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHH
Q 010774          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI  282 (501)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~  282 (501)
                      +................+++++++|||||||.||+|.++|.++..........+     .+..+++++...|++|..++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~  200 (503)
T PRK04813        126 DIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFDLSVM  200 (503)
T ss_pred             hhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchhHhHH
Confidence            111111111112334568899999999999999999999999998887766555     678899999999999999887


Q ss_pred             HHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhcc
Q 010774          283 IETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (501)
Q Consensus       283 ~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (501)
                      .++.++..|+++++.+.    ++..+++.++++++|++..+|++++.++....                           
T Consensus       201 ~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~---------------------------  253 (503)
T PRK04813        201 DLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPS---------------------------  253 (503)
T ss_pred             HHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhc---------------------------
Confidence            78899999999998764    78999999999999999999999987654210                           


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCC----Cc
Q 010774          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV----FN  433 (501)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~----~~  433 (501)
                                ....++        +++|.++++|+++++.+.+++.+.+ +..+++.||+||++..++......    ..
T Consensus       254 ----------~~~~~~--------~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  315 (503)
T PRK04813        254 ----------FNEEHL--------PNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQY  315 (503)
T ss_pred             ----------cCcccC--------CCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccC
Confidence                      011111        3799999999999999999999988 788999999999986554432211    23


Q ss_pred             ccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh--ccC--cccCCCC
Q 010774          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDG--WFHTEVH  500 (501)
Q Consensus       434 ~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~dg--w~~TGD~  500 (501)
                      ...++|++.++++++|+| +++..++.+  +.|||+|+|++++.||+++++.+...|  .+|  ||+|||.
T Consensus       316 ~~~~~g~~~~~~~~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~  383 (503)
T PRK04813        316 KRLPIGYAKPDSPLLIID-EEGTKLPDG--EQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDA  383 (503)
T ss_pred             CCCcccccCCCCEEEEEC-CCCCCCCCC--CceEEEEeccccccccCCChhHhHHhhccCCCceeEECCce
Confidence            346799999999999999 888777665  899999999999999999999998877  244  9999995

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-45  Score=378.13  Aligned_cols=345  Identities=25%  Similarity=0.323  Sum_probs=281.7

Q ss_pred             HHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEe
Q 010774           53 AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL  132 (501)
Q Consensus        53 a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l  132 (501)
                      +...++++|+++.    +     +.+||+||.++++++|..|.     ++|+|+++++|++++++++|||+++|++++|+
T Consensus        10 ~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l   75 (471)
T PRK07787         10 AAAADIADAVRIG----G-----RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV   75 (471)
T ss_pred             hcccCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence            3467888998764    3     58999999999999999986     57999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCCCCC
Q 010774          133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC  212 (501)
Q Consensus       133 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (501)
                      ++..+.+++..+++.++++.++++.+...          ..+.... +...              ...          ..
T Consensus        76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~-~~~~--------------~~~----------~~  120 (471)
T PRK07787         76 PPDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVP-VRLH--------------ARS----------WH  120 (471)
T ss_pred             CCCCChHHHHHHHHhcCCCEEEecCCccc----------cccccee-eecc--------------ccc----------cc
Confidence            99999999999999999999999763110          0000000 0000              000          00


Q ss_pred             CCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHH-HHHHHhcC
Q 010774          213 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKG  291 (501)
Q Consensus       213 ~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G  291 (501)
                      ......++++++++|||||||.||+|.++|.++...+..+...+     .+..+|++++.+|++|.+|+.. ++.+++.|
T Consensus       121 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  195 (471)
T PRK07787        121 RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRIG  195 (471)
T ss_pred             cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhcC
Confidence            11123568899999999999999999999999999887766655     6778899999999999999886 78899999


Q ss_pred             cEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHH
Q 010774          292 CSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD  370 (501)
Q Consensus       292 ~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (501)
                      +++++... ++..+++.++ +++|+++++|.++..+++...                                     . 
T Consensus       196 ~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-------------------------------------~-  236 (471)
T PRK07787        196 NRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-------------------------------------A-  236 (471)
T ss_pred             CEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-------------------------------------c-
Confidence            99988764 9999999999 999999999999988875100                                     0 


Q ss_pred             HHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEe
Q 010774          371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLE  450 (501)
Q Consensus       371 ~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~  450 (501)
                      ..++        +++|.+++||+++++++.++|.+.++..+++.||+||++..++... +....++++|+|++|++++|+
T Consensus       237 ~~~l--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~vG~~~~g~~~~i~  307 (471)
T PRK07787        237 ARAL--------RGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRA-DGERRPGWVGLPLAGVETRLV  307 (471)
T ss_pred             cccc--------cceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCC-CCcccCCcccccCCCcEEEEE
Confidence            0011        3799999999999999999999988999999999999986544332 223345789999999999999


Q ss_pred             ecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          451 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       451 d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      | +++.+++...+.+|||+++|++++.||+++++.+.+.| .+|||+|||.
T Consensus       308 d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDl  357 (471)
T PRK07787        308 D-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDV  357 (471)
T ss_pred             C-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCce
Confidence            9 88877764323489999999999999999999999888 5899999995

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-45  Score=380.20  Aligned_cols=373  Identities=17%  Similarity=0.213  Sum_probs=284.7

Q ss_pred             HHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEE
Q 010774           50 CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY  129 (501)
Q Consensus        50 ~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  129 (501)
                      ..+++.+|+++|+++.   +..    +.+||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus         4 ~~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~   76 (501)
T PRK13390          4 GTHAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYI   76 (501)
T ss_pred             chhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            3467789999999864   322    589999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCC
Q 010774          130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT  209 (501)
Q Consensus       130 v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (501)
                      +|+++.++.+++.++++.++++.+++++........ ...   .....+.+.....           ....+++......
T Consensus        77 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~~~~~~~~~-----------~~~~~~~~~~~~~  141 (501)
T PRK13390         77 TAINHHLTAPEADYIVGDSGARVLVASAALDGLAAK-VGA---DLPLRLSFGGEID-----------GFGSFEAALAGAG  141 (501)
T ss_pred             eccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHH-hhh---ccceEEEecCccc-----------ccccHHHHhcccC
Confidence            999999999999999999999999998754332211 111   1111112211100           0122333322111


Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCCCCceEEe--ecHHHHHHHhh----cceeeeeccccCCCCcEEEEecChHHHHHHHH
Q 010774          210 LDCELPPKKKTNISTIMYTSGTTGEPKGVVL--TNQAIVAEVLS----VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII  283 (501)
Q Consensus       210 ~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~--sh~~l~~~~~~----~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~  283 (501)
                          ......++.++|+|||||||.||+|.+  +|.++......    ....+     .+..+++++..+|++|..++.+
T Consensus       142 ----~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~  212 (501)
T PRK13390        142 ----PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRW  212 (501)
T ss_pred             ----CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHH
Confidence                011122356999999999999999996  45554432111    11122     5678899999999999998876


Q ss_pred             HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCC
Q 010774          284 ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ  362 (501)
Q Consensus       284 ~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (501)
                      .+..+..|+++++.+. ++..+++.++++++|++.++|+++..+++....                              
T Consensus       213 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------  262 (501)
T PRK13390        213 CSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDAD------------------------------  262 (501)
T ss_pred             HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccch------------------------------
Confidence            5556778999988765 899999999999999999999999888652100                              


Q ss_pred             CCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccc
Q 010774          363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM  442 (501)
Q Consensus       363 ~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~  442 (501)
                           ....+++        +++|.+++||+++++++.+.+++.++..+++.||+||+++++...........+++|+|+
T Consensus       263 -----~~~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~  329 (501)
T PRK13390        263 -----VRTRYDV--------SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSV  329 (501)
T ss_pred             -----hcccCCh--------hhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcc
Confidence                 0011122        278999999999999999999998899999999999998765543332233458999999


Q ss_pred             cCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhc---cCcccCCCC
Q 010774          443 TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV---DGWFHTEVH  500 (501)
Q Consensus       443 p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~---dgw~~TGD~  500 (501)
                      ++ +++|+| +++..++.|  +.|||+|+|++++.||+++++.+.+.+.   +||++|||.
T Consensus       330 ~g-~~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl  386 (501)
T PRK13390        330 LG-DLHICD-DDGNELPAG--RIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDL  386 (501)
T ss_pred             cc-eEEEEC-CCCCCCCCC--CceEEEEecCCccccccCChhhhHHhhccCCCceEEcCce
Confidence            99 799999 888877665  9999999999999999999999988772   689999995

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-45  Score=388.48  Aligned_cols=387  Identities=18%  Similarity=0.238  Sum_probs=283.4

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeccCC---CCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           44 SPWQFFCDSAKRIPNNQMLGGRKVSDG---KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        44 tl~~~l~~~a~~~p~~~al~~~~~~~~---~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ++.++|++++..+|+++|+++.   +.   ..+..+.+||.||..+++++|++|.+.| .+||+|+++++|++++++++|
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l   77 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL   77 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence            5889999999999999999875   31   1122468999999999999999999999 689999999999999999999


Q ss_pred             HHHhcCCEEEEecC---CCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccC-CCCccEEEEecCCChhhHHHhhhcCc
Q 010774          121 ACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGV  196 (501)
Q Consensus       121 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (501)
                      ||+++|++++|+++   ..+.+++.++|+.+++++++++.+....+....... ......++.++..             
T Consensus        78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  144 (578)
T PRK05850         78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-------------  144 (578)
T ss_pred             HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence            99999999999997   457889999999999999999887665543321110 0011112111100             


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceee-eeccccCCCCcEEEEecCh
Q 010774          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF-VVTGKVCSEEDTYFSFLPL  275 (501)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~d~~l~~~pl  275 (501)
                            ++....  .........+++++++|||||||.||||.++|++++..+......+ .........++++++.+|+
T Consensus       145 ------~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  216 (578)
T PRK05850        145 ------DLDSPR--GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPF  216 (578)
T ss_pred             ------ccccCC--ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCC
Confidence                  000000  0111234568899999999999999999999999988776543321 1111124568899999999


Q ss_pred             HHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHH-HHHHHHhhcCChhHHHHHHHH
Q 010774          276 AHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIY-TGISNKISSGGALSKKLFEFA  348 (501)
Q Consensus       276 ~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~-~~~~~~~~~~~~~~~~~~~~~  348 (501)
                      +|.+|+.. ++.+++.|+++++.+.     ++..+++.+++++++++ .+|.++..++ ....                 
T Consensus       217 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~-----------------  278 (578)
T PRK05850        217 YHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTS-----------------  278 (578)
T ss_pred             CCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcc-----------------
Confidence            99999875 8889999999998863     68999999999999865 5666543332 2110                 


Q ss_pred             HHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC------CCeeeeecccccCc
Q 010774          349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGLTESCS  422 (501)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~------~~l~~~yG~tE~~~  422 (501)
                                       ......++++        ++|.+++||+++++++.++|.+.++      ..+++.||+||++.
T Consensus       279 -----------------~~~~~~~~~~--------~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  333 (578)
T PRK05850        279 -----------------DDDMAGLDLG--------GVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATV  333 (578)
T ss_pred             -----------------hhhhcCcchh--------hheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhh
Confidence                             0011122232        7999999999999999999988762      36899999999876


Q ss_pred             ceecccCCCC------------------------cccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCcccc
Q 010774          423 GCFTSLADVF------------------------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG  478 (501)
Q Consensus       423 ~~~~~~~~~~------------------------~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~g  478 (501)
                      .+........                        ....++|.|. +.+++|+|.+++.+++.+  +.|||+|+|+.++.|
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g--~~Gel~v~g~~~~~g  410 (578)
T PRK05850        334 YVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAG--TVGEIWVHGDNVAAG  410 (578)
T ss_pred             heeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCC--CEEEEEEecCccccc
Confidence            5543221110                        0012345553 579999993335556555  899999999999999


Q ss_pred             ccCCcccchhhhc------------cCcccCCCCC
Q 010774          479 YYKRPDLTEEVIV------------DGWFHTEVHR  501 (501)
Q Consensus       479 Y~~~~~~~~~~~~------------dgw~~TGD~~  501 (501)
                      ||++++.+++.|.            +|||+|||.+
T Consensus       411 Y~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~  445 (578)
T PRK05850        411 YWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLG  445 (578)
T ss_pred             ccCChhhhHHHhhcccccccccCCCCCeeecccee
Confidence            9999999998872            5799999953

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=4.2e-44  Score=393.61  Aligned_cols=420  Identities=20%  Similarity=0.295  Sum_probs=327.2

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....|+.++|.+.++++|+++|+...   . ..+.++.+||+|+.++++++|++|.++|+++||+|+|+++|+++|+++.
T Consensus       424 ~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~  499 (1452)
T PTZ00297        424 AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILE  499 (1452)
T ss_pred             ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            34469999999999999999999642   1 1233468999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhH-HHhhhcCceE
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-KEAEELGVSC  198 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~  198 (501)
                      +||+++|++++|+++  +.+++.++++.++++++|++.+....+.+...   ..++.+++++....... ......+..+
T Consensus       500 lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~~  574 (1452)
T PTZ00297        500 VACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNITL  574 (1452)
T ss_pred             HHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCcce
Confidence            999999999999975  46799999999999999999877776654332   26788888864211000 0001112346


Q ss_pred             eeHHHHHhcCCC-CC-CCCCCCCCCeEEEEe---cCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEec
Q 010774          199 FSWEEFLQLGTL-DC-ELPPKKKTNISTIMY---TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL  273 (501)
Q Consensus       199 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~i~~---TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~  273 (501)
                      ..+++++..+.. .. .....++++++.|+|   ||||||.||||++||++++..+..+....  .......+|++++.+
T Consensus       575 ~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~--~~~~~~~~D~~Ls~L  652 (1452)
T PTZ00297        575 IPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTG--VLPSSFKKHLMVHFT  652 (1452)
T ss_pred             eeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhc--cccCCCCCCEEEEec
Confidence            779998876521 11 123346788898885   99999999999999999999998764321  001345789999999


Q ss_pred             ChHHHHHHHHHHHHHhcCcEEEEecCCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010774          274 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (501)
Q Consensus       274 pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (501)
                      |++|+++....+.+++.|+++..  .++..+++.|+++|||+++++|++++++.+.+..+....+.+.+++++++..++.
T Consensus       653 PLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~  730 (1452)
T PTZ00297        653 PFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRS  730 (1452)
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            99999997777888999999874  3789999999999999999999999999999988888888999999999999887


Q ss_pred             hhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecC--CCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC
Q 010774          354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA--PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV  431 (501)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~--~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~  431 (501)
                      ..+..+.   .....++++.++++|+.+|+++|.+++||+  +++..+     .. ++.+..+||+||+.   +......
T Consensus       731 ~~~~~g~---~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l-----~~-~i~i~~g~glTE~~---~~~~~~~  798 (1452)
T PTZ00297        731 RLINIHR---RDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSL-----LE-HISVCYVPCLREVF---FLPSEGV  798 (1452)
T ss_pred             HHHhcCC---CCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHH-----hC-CceEEEecceEEee---eecCCCC
Confidence            7666542   234578899999999999999999999984  444322     22 67788899999943   2233322


Q ss_pred             CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCC
Q 010774          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEV  499 (501)
Q Consensus       432 ~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD  499 (501)
                      .   ...|+|+|++++||.+.++....    +..|||+++       |+++|+.|++. .+||+..|.
T Consensus       799 ~---~~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr-------~~kdpe~T~e~-~~gW~~dG~  851 (1452)
T PTZ00297        799 F---CVDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLA-------KKGEPRRTLPI-AAQWKRDRT  851 (1452)
T ss_pred             c---ccCCeecCceEEEEcccccccCC----CCCCeEEEE-------ECCChHHHHHh-hCcCccCCe
Confidence            2   22399999999999984443221    246999995       45899999875 479988774

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.8e-45  Score=378.99  Aligned_cols=378  Identities=19%  Similarity=0.219  Sum_probs=293.3

Q ss_pred             HHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEE
Q 010774           50 CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY  129 (501)
Q Consensus        50 ~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  129 (501)
                      ...++.+|+++|+++.   ++.    +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~   76 (511)
T PRK13391          4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY   76 (511)
T ss_pred             hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence            4677889999999874   332    579999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCC
Q 010774          130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT  209 (501)
Q Consensus       130 v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (501)
                      +++++.++.+++.++++.++++.++++......+...... .......+.+.....         ......+++......
T Consensus        77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  146 (511)
T PRK13391         77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQ-CPGVRHRLVLDGDGE---------LEGFVGYAEAVAGLP  146 (511)
T ss_pred             eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhc-CCCceEEEEecCCCC---------CcccccHHHHhcCCC
Confidence            9999999999999999999999999998766554332222 222333333332111         011222333332111


Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCCCCceEEee--cHHHHHHH---hhcceeeeeccccCCCCcEEEEecChHHHHHHHHH
Q 010774          210 LDCELPPKKKTNISTIMYTSGTTGEPKGVVLT--NQAIVAEV---LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE  284 (501)
Q Consensus       210 ~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s--h~~l~~~~---~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~  284 (501)
                         .....+.++.++++|||||||.||+|.++  |.++....   ..+...+     .+..++++++..|++|.+++...
T Consensus       147 ---~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~~  218 (511)
T PRK13391        147 ---ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRAV  218 (511)
T ss_pred             ---CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHHH
Confidence               11112345678999999999999999964  55543322   2222233     56788999999999999998888


Q ss_pred             HHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCC
Q 010774          285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN  363 (501)
Q Consensus       285 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (501)
                      +.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+....                               
T Consensus       219 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-------------------------------  267 (511)
T PRK13391        219 MLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEE-------------------------------  267 (511)
T ss_pred             HHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchh-------------------------------
Confidence            889999999998865 999999999999999999999999887642110                               


Q ss_pred             CcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCccccccc
Q 010774          364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMT  443 (501)
Q Consensus       364 ~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p  443 (501)
                          ..+++++        +++|.+++||+++++++.+.+++.+|..+++.||+||++.++..........++++|+|++
T Consensus       268 ----~~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~  335 (511)
T PRK13391        268 ----VRDKYDL--------SSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMF  335 (511)
T ss_pred             ----hcccCCc--------cceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCccc
Confidence                0111122        3899999999999999999999988999999999999998765443333344589999999


Q ss_pred             CeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-c-cCcccCCCC
Q 010774          444 TVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V-DGWFHTEVH  500 (501)
Q Consensus       444 ~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~-dgw~~TGD~  500 (501)
                      + +++|+| +++..++.|  +.|||+++|+ ++.||+++++.+.+.+ . +|||+|||.
T Consensus       336 g-~~~i~d-~~~~~~~~g--~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~  389 (511)
T PRK13391        336 G-DLHILD-DDGAELPPG--EPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDI  389 (511)
T ss_pred             c-eEEEEC-CCCCCCCCC--CceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCE
Confidence            9 699999 888776655  8999999999 8889999999998877 3 499999995

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-44  Score=376.87  Aligned_cols=393  Identities=23%  Similarity=0.293  Sum_probs=292.7

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      .++.+.|++.++.+|+++|+.+.   +      ..+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~   88 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV   88 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            57889999999999999999864   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHH
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (501)
                      +++|++++|+++..+.+++..+++.++++.++++.+....+.+..... ... ..+.+.......   ..........++
T Consensus        89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~---~~~~~~~~~~~~  163 (545)
T PRK08162         89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALL-PGP-KPLVIDVDDPEY---PGGRFIGALDYE  163 (545)
T ss_pred             HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhC-CCC-ceEEEecCcccc---ccCCCcccccHH
Confidence            999999999999999999999999999999999988766554332211 111 122222111000   000111233556


Q ss_pred             HHHhcCCCCCCC-CCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          203 EFLQLGTLDCEL-PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       203 ~~~~~~~~~~~~-~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                      +++......... ...+..++++++|||||||.||+|+++|.++..........+     .+..++++++.+|++|..++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~  238 (545)
T PRK08162        164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGW  238 (545)
T ss_pred             HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhH
Confidence            665443211111 123445789999999999999999999998776655543333     56778899999999999988


Q ss_pred             HHHH-HHHhcCcEEEEecCCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCC
Q 010774          282 IIET-HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM  360 (501)
Q Consensus       282 ~~~~-~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (501)
                      ...+ ..+..|.++++...++..+++.++++++|++.++|.+++.+++.....                           
T Consensus       239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------  291 (545)
T PRK08162        239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEW---------------------------  291 (545)
T ss_pred             HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccc---------------------------
Confidence            7644 445555555444459999999999999999999999999987521100                           


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC---------
Q 010774          361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV---------  431 (501)
Q Consensus       361 ~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~---------  431 (501)
                                ...+        .+.+.++++|+++++.+.+.+++. ++++++.||+||+++.++......         
T Consensus       292 ----------~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  352 (545)
T PRK08162        292 ----------RAGI--------DHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDE  352 (545)
T ss_pred             ----------ccCC--------ccceEEEECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccc
Confidence                      0000        134556789999999999998875 899999999999876544332110         


Q ss_pred             -CcccCcccccccC-eEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          432 -FNMIGTVGVPMTT-VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       432 -~~~~~s~G~p~p~-~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                       ....+++|.+.+. ..++|+|.+++.+++.+.++.|||+|+|+.++.||+++++.+...|.+|||+|||.
T Consensus       353 ~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl  423 (545)
T PRK08162        353 RAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDL  423 (545)
T ss_pred             hhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCce
Confidence             0112556777653 46888883355555543335799999999999999999999999999999999995

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.6e-45  Score=383.74  Aligned_cols=383  Identities=19%  Similarity=0.241  Sum_probs=292.6

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....++.+.|.++++.+|+++|+++.   +      +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        34 ~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~  104 (600)
T PRK08279         34 DSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAW  104 (600)
T ss_pred             CCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence            45678999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      |||+++|++++++++.++.+++.++++.++++++|++.+....+....... .....++..++....          ...
T Consensus       105 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~  173 (600)
T PRK08279        105 LGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-ARPPRLWVAGGDTLD----------DPE  173 (600)
T ss_pred             HHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cccceEEEecCcccc----------ccc
Confidence            999999999999999999999999999999999999987766554332221 122233333221100          011


Q ss_pred             eHHHHHhcC---CC--CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecC
Q 010774          200 SWEEFLQLG---TL--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (501)
Q Consensus       200 ~~~~~~~~~---~~--~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (501)
                      .+.++....   ..  .........+++++|+|||||||.||||.+||.+++..+..+...+     .+..+|++++.+|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~~p  248 (600)
T PRK08279        174 GYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCCLP  248 (600)
T ss_pred             cHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEecC
Confidence            223332211   11  1112334568899999999999999999999999999998876666     7889999999999


Q ss_pred             hHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 010774          275 LAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (501)
Q Consensus       275 l~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (501)
                      ++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|++++.+++....                    
T Consensus       249 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~--------------------  308 (600)
T PRK08279        249 LYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPK--------------------  308 (600)
T ss_pred             chhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCC--------------------
Confidence            999999886 5567888999888765 899999999999999999999999887652100                    


Q ss_pred             hhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCC-CeeeeecccccCcceecccCCC
Q 010774          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADV  431 (501)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~-~l~~~yG~tE~~~~~~~~~~~~  431 (501)
                                    .   ....        .++|.+  +|+.+++++.++|.+.++. .+++.||+||++..++. .   
T Consensus       309 --------------~---~~~~--------~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~-~---  357 (600)
T PRK08279        309 --------------P---TDRD--------HRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFIN-V---  357 (600)
T ss_pred             --------------c---cccC--------cceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeecc-c---
Confidence                          0   0000        266754  4778999999999999876 59999999998864332 1   


Q ss_pred             CcccCccccccc----CeEE---------EEeecCCCCccCCCCCCCceEE--EecCCccccccCCcccchhhh------
Q 010774          432 FNMIGTVGVPMT----TVEA---------RLESVPEMGYDALSSVPRGEIC--LRGNTLFSGYYKRPDLTEEVI------  490 (501)
Q Consensus       432 ~~~~~s~G~p~p----~~~i---------~I~d~~~~~~~~~~~~~~Gei~--v~g~~v~~gY~~~~~~~~~~~------  490 (501)
                      ...++++|++.+    +..+         .|.+ .++...+...++.|||+  ++|++++.|| ++++.+.+.|      
T Consensus       358 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~  435 (600)
T PRK08279        358 FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFK  435 (600)
T ss_pred             CCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccC
Confidence            223467887666    3333         2333 33332333445899998  7899999999 8888887765      


Q ss_pred             -ccCcccCCCC
Q 010774          491 -VDGWFHTEVH  500 (501)
Q Consensus       491 -~dgw~~TGD~  500 (501)
                       .++||+|||.
T Consensus       436 ~~~~~~~TGDl  446 (600)
T PRK08279        436 KGDAWFNTGDL  446 (600)
T ss_pred             CCCceEeecce
Confidence             2589999995

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=9.9e-45  Score=409.51  Aligned_cols=384  Identities=20%  Similarity=0.224  Sum_probs=294.5

Q ss_pred             CCCCCHHHHHHHHHHhCCC-CcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~-~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~  118 (501)
                      ....++.+.|.+.++++|+ +.++.+.   ++     +.+||+||.++++++|+.|++ |+++||+|+++++|+++++++
T Consensus       628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~  698 (1140)
T PRK06814        628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT  698 (1140)
T ss_pred             cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence            3457788999999988874 5666532   22     479999999999999999975 999999999999999999999


Q ss_pred             HHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhh-hcCccCCCCccEEEEecCCChhhHHHhhhcCce
Q 010774          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (501)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (501)
                      ++||+++|++++|+||..+.+++.++++.++++.++++++..+... ............++.+++.....        ..
T Consensus       699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~  770 (1140)
T PRK06814        699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQI--------GL  770 (1140)
T ss_pred             HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccC--------Ch
Confidence            9999999999999999999999999999999999999875443210 00000111222344433211000        00


Q ss_pred             EeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHH
Q 010774          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (501)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~  277 (501)
                      ...+.+...............++++++++|||||||.||||.++|+++..........+     ....+|++++.+|++|
T Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h  845 (1140)
T PRK06814        771 ADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVFH  845 (1140)
T ss_pred             HHHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchHH
Confidence            00111111111111111134678999999999999999999999999998888776665     7788999999999999


Q ss_pred             HHHHHH-HHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          278 IYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       278 ~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      .+++.. ++.++..|+++++.+.  +...+.+.++++++|+++++|++++.+.+..                        
T Consensus       846 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~------------------------  901 (1140)
T PRK06814        846 SFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA------------------------  901 (1140)
T ss_pred             HHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc------------------------
Confidence            999864 7789999999998764  6678889999999999999999998876420                        


Q ss_pred             hhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcc
Q 010774          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (501)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (501)
                                     ...++        +++|.+++||+++++++.+.+.+.+++++++.||+||++.+++..... ...
T Consensus       902 ---------------~~~~~--------~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~  957 (1140)
T PRK06814        902 ---------------HPYDF--------RSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPM-HNK  957 (1140)
T ss_pred             ---------------ccccc--------cceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCC-CCC
Confidence                           01112        389999999999999999999999999999999999998876654432 234


Q ss_pred             cCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchh-hhccCcccCCCC
Q 010774          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE-VIVDGWFHTEVH  500 (501)
Q Consensus       435 ~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~-~~~dgw~~TGD~  500 (501)
                      .+++|+|+||+++++++ .++      .++.|||+++|++++.||+++++.... ...+|||+|||.
T Consensus       958 ~~~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl 1017 (1140)
T PRK06814        958 AGTVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDI 1017 (1140)
T ss_pred             CCcCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCE
Confidence            58999999999999988 432      237899999999999999987654322 226899999995

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-44  Score=373.82  Aligned_cols=363  Identities=19%  Similarity=0.236  Sum_probs=286.1

Q ss_pred             EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEE
Q 010774           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (501)
Q Consensus        76 ~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~  155 (501)
                      +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.++++.+++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCC
Q 010774          156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEP  235 (501)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~P  235 (501)
                      +......+.+...........++......           .....+++......   .......++.++++|||||||.|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGtTG~P  155 (502)
T PRK08276         90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP---DTPIADETAGADMLYSSGTTGRP  155 (502)
T ss_pred             ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCC---CCCCCCCCcceEEEECCCCCCCC
Confidence            98766555333222111344444442111           11223444433221   11223456789999999999999


Q ss_pred             ceEEeecHHHHHHHh--hcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhc
Q 010774          236 KGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELK  312 (501)
Q Consensus       236 K~v~~sh~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~  312 (501)
                      |+|.++|.++.....  ........ ......++++++..|++|..++...+.++..|+++++.+. ++..+++.+++++
T Consensus       156 K~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  234 (502)
T PRK08276        156 KGIKRPLPGLDPDEAPGMMLALLGF-GMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYR  234 (502)
T ss_pred             ceEEEccCCcchhhhhHHhhhhhhh-cccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence            999999887654321  11000000 0123577899999999999998887789999999988865 8999999999999


Q ss_pred             CcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEec
Q 010774          313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA  392 (501)
Q Consensus       313 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG  392 (501)
                      +|+++++|+++..+++..                                   ......++++        ++|.+++||
T Consensus       235 ~t~~~~~P~~~~~l~~~~-----------------------------------~~~~~~~~~~--------~lr~i~~~g  271 (502)
T PRK08276        235 VTHSQLVPTMFVRMLKLP-----------------------------------EEVRARYDVS--------SLRVAIHAA  271 (502)
T ss_pred             CeEEEehHHHHHHHHhCc-----------------------------------cccCCCCCcc--------cceEEEecC
Confidence            999999999999887521                                   0011122333        899999999


Q ss_pred             CCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEec
Q 010774          393 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG  472 (501)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g  472 (501)
                      ++++.++.+++.+.++..+++.||+||++.+++....+.....+++|+|+ +++++|+| +++.+++.+  +.|||+++|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g--~~Gel~v~~  347 (502)
T PRK08276        272 APCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNELPPG--EIGTVYFEM  347 (502)
T ss_pred             CCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCCcCC--CceEEEEEC
Confidence            99999999999998899999999999999877665444344558999999 88999999 888777655  899999999


Q ss_pred             CCccccccCCcccchhhh-ccCcccCCCC
Q 010774          473 NTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       473 ~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      +.++.||+++++.+.+.+ .+|||+|||.
T Consensus       348 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~  376 (502)
T PRK08276        348 DGYPFEYHNDPEKTAAARNPHGWVTVGDV  376 (502)
T ss_pred             CCccchhcCCHHHHHHHhcCCCceeecce
Confidence            999999999999999888 5699999995

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.9e-44  Score=376.71  Aligned_cols=375  Identities=20%  Similarity=0.228  Sum_probs=290.9

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      .++.+.|...+..+|+.+++...   +..    +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~   74 (545)
T PRK07768          2 SRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGL   74 (545)
T ss_pred             chHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            56889999999999999988654   432    68999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHH-------HHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcC
Q 010774          123 NSQAITYVPLYDTLGANAV-------EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l-------~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (501)
                      +++|++++++++..+.+++       ..+++.++++.+++++........ ....                        .
T Consensus        75 ~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~------------------------~  129 (545)
T PRK07768         75 WMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPV-LEEK------------------------G  129 (545)
T ss_pred             HHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhh-hccc------------------------C
Confidence            9999999999988776544       456777899999998754432211 1000                        0


Q ss_pred             ceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCC-cEEEEecC
Q 010774          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE-DTYFSFLP  274 (501)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~-d~~l~~~p  274 (501)
                      ..+..++++.....  ........+++++|+|||||||.||+|+++|+++......+...+     ++..+ |++++.+|
T Consensus       130 ~~~~~~~~l~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~p  202 (545)
T PRK07768        130 IRVLTVADLLAADP--IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSWLP  202 (545)
T ss_pred             CceeehhhhcccCC--CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEeCC
Confidence            11334444443221  122344578999999999999999999999999999887765554     55555 89999999


Q ss_pred             hHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 010774          275 LAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA  348 (501)
Q Consensus       275 l~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (501)
                      ++|..++.. ++.++..|+++++.+.     ++..+.+.+++++++++.++|.++..+.+.+.....             
T Consensus       203 ~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------  269 (545)
T PRK07768        203 LFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAK-------------  269 (545)
T ss_pred             CccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhcccc-------------
Confidence            999999885 6678999999988753     678889999999999988777777666543211100             


Q ss_pred             HHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh---hCC---CeeeeecccccCc
Q 010774          349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT---SGA---PLTQGYGLTESCS  422 (501)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~---~~~---~l~~~yG~tE~~~  422 (501)
                                          ...+++        +++|.+++||+++++++.+++.+.   +|.   .+++.||+||++.
T Consensus       270 --------------------~~~~~~--------~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~  321 (545)
T PRK07768        270 --------------------PGAFDL--------SSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATL  321 (545)
T ss_pred             --------------------ccCCCc--------hheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccce
Confidence                                001222        289999999999999999998874   454   4999999999987


Q ss_pred             ceecccCCC-------------------------CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccc
Q 010774          423 GCFTSLADV-------------------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS  477 (501)
Q Consensus       423 ~~~~~~~~~-------------------------~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~  477 (501)
                      .++......                         ...++++|+|+++++++|+| ++++.++.+  +.|||+++|+.++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g--~~Gel~v~~~~~~~  398 (545)
T PRK07768        322 AVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPR--GVGVIELRGESVTP  398 (545)
T ss_pred             EEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCC--CEEEEEEccCcccc
Confidence            655432211                         11346899999999999999 888777655  89999999999999


Q ss_pred             cccCCcccchhhhccCcccCCCC
Q 010774          478 GYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       478 gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ||++++........+|||+|||.
T Consensus       399 gy~~~~~~~~~~~~~g~~~TGDl  421 (545)
T PRK07768        399 GYLTMDGFIPAQDADGWLDTGDL  421 (545)
T ss_pred             cccCCCCCcccccCCCeeeccce
Confidence            99987655544447899999995

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=4.7e-44  Score=360.42  Aligned_cols=342  Identities=23%  Similarity=0.319  Sum_probs=280.7

Q ss_pred             eHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcC
Q 010774           79 TYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE  157 (501)
Q Consensus        79 Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~  157 (501)
                      ||.||.+.++++|++|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++.++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCc
Q 010774          158 NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPK  236 (501)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK  236 (501)
                      .....+.....       .+..+...                 +....... ...........+++++++|||||||.||
T Consensus        81 ~~~~~~~~~~~-------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK  136 (408)
T TIGR01733        81 ALASRLAGLVL-------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK  136 (408)
T ss_pred             chhhhccccCC-------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence            76654422211       11111110                 00000000 0011111134688999999999999999


Q ss_pred             eEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecC----CHHHHHHHHhhhc
Q 010774          237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELK  312 (501)
Q Consensus       237 ~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~  312 (501)
                      +|.+||.++......+...+     .+..+|++++..|++|.+++..++.++..|+++++.+.    .+..+.+.+++++
T Consensus       137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  211 (408)
T TIGR01733       137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP  211 (408)
T ss_pred             EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence            99999999999998877665     77789999999999999998889999999999998775    3688999999999


Q ss_pred             CcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEec
Q 010774          313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA  392 (501)
Q Consensus       313 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG  392 (501)
                      +|.+.++|.+++.+++...                                        .++        +++|.+++||
T Consensus       212 ~t~l~~~p~~~~~l~~~~~----------------------------------------~~~--------~~l~~v~~~g  243 (408)
T TIGR01733       212 VTVLNLTPSLLALLAAALP----------------------------------------PAL--------ASLRLVILGG  243 (408)
T ss_pred             ceEEEeCHHHHHHHHHhhh----------------------------------------hcc--------cCceEEEEeC
Confidence            9999999999999876321                                        111        3899999999


Q ss_pred             CCCCHHHHHHHHHhhC-CCeeeeecccccCcceecccCCCCc----ccCcccccccCeEEEEeecCCCCccCCCCCCCce
Q 010774          393 APLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADVFN----MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGE  467 (501)
Q Consensus       393 ~~~~~~~~~~~~~~~~-~~l~~~yG~tE~~~~~~~~~~~~~~----~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Ge  467 (501)
                      +++++++.+.|.+.++ +.+++.||+||++.+++........    .+.++|+|+++++++|+| +++..++.+  +.||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g--~~Ge  320 (408)
T TIGR01733       244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDLRPVPVG--VVGE  320 (408)
T ss_pred             ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCCCCCCCC--CceE
Confidence            9999999999999997 8999999999999877533222211    157899999999999999 777766655  8999


Q ss_pred             EEEecCCccccccCCcccchhhhc-------cC--cccCCCC
Q 010774          468 ICLRGNTLFSGYYKRPDLTEEVIV-------DG--WFHTEVH  500 (501)
Q Consensus       468 i~v~g~~v~~gY~~~~~~~~~~~~-------dg--w~~TGD~  500 (501)
                      |+|+|++++.||+++++.+.+.|.       +|  ||+|||.
T Consensus       321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl  362 (408)
T TIGR01733       321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDL  362 (408)
T ss_pred             EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCce
Confidence            999999999999999999988772       23  9999995

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.6e-43  Score=365.02  Aligned_cols=392  Identities=21%  Similarity=0.245  Sum_probs=299.2

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      .|+.++|.+.++++|+++|+++.   +      +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus         3 ~~l~~~~~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~   73 (533)
T PRK07798          3 WNIADLFEAVADAVPDRVALVCG---D------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGA   73 (533)
T ss_pred             ccHHHHHHHHHHhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            37999999999999999999875   3      48999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHH
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (501)
                      +++|++++|+++.++.+++.++++.++++.++++......+.+... .....+.++.++.....      ........++
T Consensus        74 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~  146 (533)
T PRK07798         74 FKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLP-RLPKLRTLVVVEDGSGN------DLLPGAVDYE  146 (533)
T ss_pred             HhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhc-cCCCccEEEEecCCccc------ccCCccccHH
Confidence            9999999999999999999999999999999999876665544322 22444556555543211      0011234566


Q ss_pred             HHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeee----ccccC------CCCcEEEEe
Q 010774          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV----TGKVC------SEEDTYFSF  272 (501)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~----~~~~~------~~~d~~l~~  272 (501)
                      +++............ .++.++|+|||||||.||+|+++|.++..........+..    ....+      ..+++++..
T Consensus       147 ~~~~~~~~~~~~~~~-~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (533)
T PRK07798        147 DALAAGSPERDFGER-SPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA  225 (533)
T ss_pred             HHHhccCCcCCCCCC-CCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence            666543222222222 3345789999999999999999999987655442211100    00111      567899999


Q ss_pred             cChHHHHHHHHHHHHHhcCcEEEEec--C-CHHHHHHHHhhhcCcEEEecchHHHH-HHHHHHHHhhcCChhHHHHHHHH
Q 010774          273 LPLAHIYDQIIETHCIHKGCSIGFWR--G-DVRYLMEDIQELKPTMFSGVPRVYDR-IYTGISNKISSGGALSKKLFEFA  348 (501)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~~~~~--~-~~~~~~~~i~~~~~t~~~~~P~~~~~-l~~~~~~~~~~~~~~~~~~~~~~  348 (501)
                      +|++|..++..++.+++.|+++++.+  . ++..+++.++++++|.+.++|..+.. +.+.+. .               
T Consensus       226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~---------------  289 (533)
T PRK07798        226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A---------------  289 (533)
T ss_pred             cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c---------------
Confidence            99999999988899999999999988  3 89999999999999999999876643 332211 0               


Q ss_pred             HHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecc
Q 010774          349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTS  427 (501)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~  427 (501)
                                          ....++        +++|.+++||+++++++.+++++.+ +..+++.||+||++.+....
T Consensus       290 --------------------~~~~~~--------~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  341 (533)
T PRK07798        290 --------------------RGPYDL--------SSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGT  341 (533)
T ss_pred             --------------------cccCCC--------CceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccC
Confidence                                000111        3899999999999999999999988 78899999999997655433


Q ss_pred             cCCCCcccCccc--ccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhc--c--CcccCCCC
Q 010774          428 LADVFNMIGTVG--VPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--D--GWFHTEVH  500 (501)
Q Consensus       428 ~~~~~~~~~s~G--~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~--d--gw~~TGD~  500 (501)
                      .....   ...|  ++.++..++|+| +++..++.+....|+|+ +++.++.||+++++.+++.|.  +  +||+|||.
T Consensus       342 ~~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~  415 (533)
T PRK07798        342 VAKGA---VHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDR  415 (533)
T ss_pred             CCCCC---ccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcE
Confidence            22111   2334  788999999999 88887766622226665 566899999999999988872  3  59999995

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.7e-44  Score=365.05  Aligned_cols=338  Identities=26%  Similarity=0.315  Sum_probs=276.8

Q ss_pred             CCHHHHH-HHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           43 ESPWQFF-CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        43 ~tl~~~l-~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      +++.+.+ ..+++.+|+++|+++.    +     +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la   72 (458)
T PRK09029          2 MIFSDWPWRHWAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA   72 (458)
T ss_pred             chhhcChHHHHHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence            4455555 5568899999999754    2     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|+++..+.+++..+++.++++.++++.+... +..        +...                      ..
T Consensus        73 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~----------------------~~  121 (458)
T PRK09029         73 LLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSL----------------------HL  121 (458)
T ss_pred             HHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------cccc----------------------cc
Confidence            9999999999999999999999999999999998776432 100        0000                      00


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                      .     ...........++++++++|||||||.||+|.+||++++..+......+     ....+|+++..+|++|.+++
T Consensus       122 ~-----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g~  191 (458)
T PRK09029        122 Q-----LVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSGQ  191 (458)
T ss_pred             c-----cccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhhh
Confidence            0     0001112234578899999999999999999999999999988776665     67889999999999999998


Q ss_pred             HHHHHHHhcCcEEEEecCCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCC
Q 010774          282 IIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP  361 (501)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (501)
                      ..++.++..|+++++.+.  ..+++.+  .++|.+..+|+++..++.....                             
T Consensus       192 ~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~-----------------------------  238 (458)
T PRK09029        192 GIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE-----------------------------  238 (458)
T ss_pred             HHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc-----------------------------
Confidence            878889999999998764  4566666  4899999999999887652100                             


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCccccc
Q 010774          362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP  441 (501)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p  441 (501)
                                          ..++|.+++||+++++.+.+.+.+. +.++++.||+||++..++....+   ...++|+|
T Consensus       239 --------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~---~~~~~G~~  294 (458)
T PRK09029        239 --------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRAD---GLAGVGSP  294 (458)
T ss_pred             --------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCCC---CCCCCCCC
Confidence                                0278999999999999999998865 99999999999998765543322   22569999


Q ss_pred             ccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCCC
Q 010774          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVHR  501 (501)
Q Consensus       442 ~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~~  501 (501)
                      +++++++|++              |||+|+|+.++.||+++++.+.....+|||+|||.+
T Consensus       295 ~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~  340 (458)
T PRK09029        295 LPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRG  340 (458)
T ss_pred             CCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcE
Confidence            9999999986              899999999999999999887665578999999963

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.4e-43  Score=367.21  Aligned_cols=367  Identities=20%  Similarity=0.212  Sum_probs=285.1

Q ss_pred             EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEE
Q 010774           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (501)
Q Consensus        76 ~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~  155 (501)
                      +.+||.||.++++++|++|.++|+++||+|+++++|+++++++++||+++|+++++++|..+.+++..+++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhhhhcCccCCCCccEEEEecCCChhhH-----HHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCC
Q 010774          156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-----KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSG  230 (501)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  230 (501)
                      +......+.+....   . ..++..........     ............++++.....   .......+++++++||||
T Consensus        90 ~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSG  162 (509)
T PRK12406         90 HADLLHGLASALPA---G-VTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE---PYDGPPVPQPQSMIYTSG  162 (509)
T ss_pred             ccchhhhhhhhhhc---c-cceeecccccccccccccccccccCCCCccCHHHHhcccC---ccCCCCCCCceEEEECCC
Confidence            88766554332211   1 11111111100000     000001112334555443221   122334688999999999


Q ss_pred             CCCCCceEEeecHHHHHH---HhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecC-CHHHHHH
Q 010774          231 TTGEPKGVVLTNQAIVAE---VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLME  306 (501)
Q Consensus       231 tTG~PK~v~~sh~~l~~~---~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~  306 (501)
                      |||.||+|.++|.+....   .......+     ++..++++++..|++|..+..+.+.++..|+++++.+. ++..+++
T Consensus       163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  237 (509)
T PRK12406        163 TTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQ  237 (509)
T ss_pred             CCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHH
Confidence            999999999977654333   33333333     67888999999999999888777778889999988765 8999999


Q ss_pred             HHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCcee
Q 010774          307 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ  386 (501)
Q Consensus       307 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr  386 (501)
                      .++++++|.+.++|.+++.+++....                                   ..+.+++        +++|
T Consensus       238 ~l~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------------~~~~~~~--------~~l~  274 (509)
T PRK12406        238 LIERHRITHMHMVPTMFIRLLKLPEE-----------------------------------VRAKYDV--------SSLR  274 (509)
T ss_pred             HHHHcCCeEEEccHHHHHHHHhCchh-----------------------------------hcccCCC--------Ccee
Confidence            99999999999999999988752110                                   0111122        3899


Q ss_pred             EEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCc
Q 010774          387 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG  466 (501)
Q Consensus       387 ~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~G  466 (501)
                      .+++||+++++++.+++.+.++..+++.||+||++.+++....+....++++|+|+++++++|+| +++..++.+  +.|
T Consensus       275 ~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g--~~G  351 (509)
T PRK12406        275 HVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQG--EIG  351 (509)
T ss_pred             EEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCCCCC--Cce
Confidence            99999999999999999998899999999999999877655444444568999999999999999 888777665  899


Q ss_pred             eEEEecCCccc-cccCCcccchhhhccCcccCCCC
Q 010774          467 EICLRGNTLFS-GYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       467 ei~v~g~~v~~-gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ||+++|+.++. ||+++++.++..+.+|||+|||.
T Consensus       352 el~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~  386 (509)
T PRK12406        352 EIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDV  386 (509)
T ss_pred             EEEEECCccccccccCCchhcccccCCCCeEEccE
Confidence            99999999875 99999998887778999999995

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.5e-42  Score=352.56  Aligned_cols=326  Identities=25%  Similarity=0.356  Sum_probs=267.3

Q ss_pred             eHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCC
Q 010774           79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN  158 (501)
Q Consensus        79 Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~  158 (501)
                      ||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++.+++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             ChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCce
Q 010774          159 KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKG  237 (501)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~  237 (501)
                      ......           ..                     ..+..+..... ..........+++++++|||||||.||+
T Consensus        81 ~~~~~~-----------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        81 LEEKDF-----------QA---------------------DSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             ccccce-----------ee---------------------cchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            321110           00                     00111111110 0111223456789999999999999999


Q ss_pred             EEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecCCHHHHHHHHhhhcCcEEE
Q 010774          238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFS  317 (501)
Q Consensus       238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~  317 (501)
                      |.++|.++...+......+     +...+|++++..|++|..++..++.++..|+++++.+.. ..+++.++++++|++.
T Consensus       129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~  202 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHIS  202 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEE
Confidence            9999999999888877666     788999999999999999988888999999999987643 3899999999999999


Q ss_pred             ecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCH
Q 010774          318 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI  397 (501)
Q Consensus       318 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~  397 (501)
                      ++|.++..+++..                                     ...            .++|.+++||+++++
T Consensus       203 ~~P~~l~~l~~~~-------------------------------------~~~------------~~l~~~~~~G~~~~~  233 (436)
T TIGR01923       203 LVPTQLNRLLDEG-------------------------------------GHN------------ENLRKILLGGSAIPA  233 (436)
T ss_pred             eHHHHHHHHHhCc-------------------------------------CCC------------CceEEEEECCCCCCH
Confidence            9999999887521                                     000            279999999999999


Q ss_pred             HHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccc
Q 010774          398 HVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS  477 (501)
Q Consensus       398 ~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~  477 (501)
                      ++.+.+++. ++.+++.||+||++..++....+......++|+|+++++++|.+ ++..       +.|||+++|+.++.
T Consensus       234 ~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-------~~Gel~v~~~~~~~  304 (436)
T TIGR01923       234 PLIEEAQQY-GLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNKE-------GHGEIMVKGANLMK  304 (436)
T ss_pred             HHHHHHHHh-CCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCCC-------CceEEEEECCccch
Confidence            999988764 99999999999998766544433322223599999999999954 3221       68999999999999


Q ss_pred             cccCCcccchhhhccCcccCCCC
Q 010774          478 GYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       478 gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ||+++++.+...+.+|||+|||.
T Consensus       305 gy~~~~~~~~~~~~~~~~~TGD~  327 (436)
T TIGR01923       305 GYLYQGELTPAFEQQGWFNTGDI  327 (436)
T ss_pred             hhCCChhhhhhhhcCCCeeccce
Confidence            99998888877668899999995

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=1.2e-42  Score=353.12  Aligned_cols=309  Identities=17%  Similarity=0.145  Sum_probs=247.4

Q ss_pred             eeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEc
Q 010774           78 LTYQEVYDAAIRFGSAMRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ  156 (501)
Q Consensus        78 ~Ty~el~~~v~~~A~~L~~~gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~  156 (501)
                      +.|+||.++++++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            6899999999999999999988 579999999999999999999999999999999999999999999999999999987


Q ss_pred             CCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCc
Q 010774          157 ENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPK  236 (501)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK  236 (501)
                      .+.....                ....                           ........++++++++|||||||.||
T Consensus       100 ~~~~~~~----------------~~~~---------------------------~~~~~~~~~~~~~~i~~TSGTTG~PK  136 (452)
T PRK07445        100 DQLKLSH----------------PPPL---------------------------PSQGILPNLETGWIMIPTGGSSGQIR  136 (452)
T ss_pred             Ccccccc----------------CCCC---------------------------CccccCCCCCCcEEEEeCCCCCCCCc
Confidence            6532110                0000                           00001124578999999999999999


Q ss_pred             eEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcE
Q 010774          237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTM  315 (501)
Q Consensus       237 ~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~  315 (501)
                      +|++||.++...+......+     .+.. ++.++.+|++|.+|+..++.+++.|+++++.+. ..........++++++
T Consensus       137 gV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~  210 (452)
T PRK07445        137 FAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFF  210 (452)
T ss_pred             EEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceE
Confidence            99999999988887765544     3433 467889999999999888899999999998764 2222233445788999


Q ss_pred             EEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCC
Q 010774          316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL  395 (501)
Q Consensus       316 ~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~  395 (501)
                      ++++|++++.+++..                                        ..++        +++|.+++||+++
T Consensus       211 ~~~vP~~l~~l~~~~----------------------------------------~~~l--------~~l~~i~~gG~~l  242 (452)
T PRK07445        211 LSLVPTQLQRLLQLR----------------------------------------PQWL--------AQFRTILLGGAPA  242 (452)
T ss_pred             EEehHHHHHHHHhhC----------------------------------------hhhh--------hcceEEEECCccC
Confidence            999999999886410                                        0112        2899999999999


Q ss_pred             CHHHHHHHHHhhCCCeeeeecccccCcceecccCCC-CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCC
Q 010774          396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNT  474 (501)
Q Consensus       396 ~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~-~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~  474 (501)
                      ++++.+.+++. ++.+++.||+||++..++....+. ....+++|+|+|+++++|++           ++.|||+|+|++
T Consensus       243 ~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g~~  310 (452)
T PRK07445        243 WPSLLEQARQL-QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQAQS  310 (452)
T ss_pred             CHHHHHHHHhc-CCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeCCc
Confidence            99999988764 899999999999986554333222 23457899999999999972           268999999999


Q ss_pred             ccccccCCcccchhhhccCcccCCCC
Q 010774          475 LFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       475 v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ++.||++++..     .+|||+|||.
T Consensus       311 ~~~gY~~~~~~-----~~g~~~TGDl  331 (452)
T PRK07445        311 LALGYYPQILD-----SQGIFETDDL  331 (452)
T ss_pred             cchhhcCCccC-----CCCEEECCCE
Confidence            99999976431     4799999995

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.6e-42  Score=342.91  Aligned_cols=399  Identities=19%  Similarity=0.222  Sum_probs=316.0

Q ss_pred             CCCCCCCHHHH-HHHHHHh-CCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH
Q 010774           38 SPAGLESPWQF-FCDSAKR-IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW  115 (501)
Q Consensus        38 ~~~~~~tl~~~-l~~~a~~-~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~  115 (501)
                      ++....++.+. ++++.+. .++.+++++.   +..++....+||.|+.+++.++|..|.+.|+++||+|++++|+.+++
T Consensus        58 ~~g~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~  134 (626)
T KOG1175|consen   58 FPGAFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEA  134 (626)
T ss_pred             cccchhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHH
Confidence            33455666555 4444444 4889999988   54444445699999999999999999988999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCcc--------CCC----CccEEEEecCC
Q 010774          116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR--------CCL----YLKTIVSFANV  183 (501)
Q Consensus       116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~--------~~~----~~~~v~~~~~~  183 (501)
                      ++++|||+++|++..++-..+++.++...|+.++++++++.+............        ...    .....+.+...
T Consensus       135 ~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  214 (626)
T KOG1175|consen  135 VIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR  214 (626)
T ss_pred             HHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc
Confidence            999999999999999999999999999999999999999988543322111100        000    00111111111


Q ss_pred             ChhhHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHh-hcceeeeecccc
Q 010774          184 SSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL-SVDQMFVVTGKV  262 (501)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~-~~~~~~~~~~~~  262 (501)
                      .            ....+++.+.......++...+.+++.+|+|||||||.||++++++...+.... .....+     .
T Consensus       215 ~------------~d~~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~-----d  277 (626)
T KOG1175|consen  215 N------------RDLFWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF-----D  277 (626)
T ss_pred             c------------ccccHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec-----c
Confidence            0            123455555555444557778889999999999999999999999886555544 444444     8


Q ss_pred             CCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC---CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCC
Q 010774          263 CSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (501)
Q Consensus       263 ~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (501)
                      ++.+|++++...+.|+.+.++ .+.+|+.|+++++...   ++..+++.+.++++|++++.|+.++.+.+..        
T Consensus       278 ~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~--------  349 (626)
T KOG1175|consen  278 LQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLG--------  349 (626)
T ss_pred             CCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhc--------
Confidence            899999999999999999997 7789999999999865   8899999999999999999999999876532        


Q ss_pred             hhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCC-Ceeeeecc
Q 010774          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGL  417 (501)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~-~l~~~yG~  417 (501)
                                                 ......++++        +||.+.++||+++++..+++.+.++. +|++.||+
T Consensus       350 ---------------------------~~~~~~~~~~--------sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~q  394 (626)
T KOG1175|consen  350 ---------------------------QEDVTSYSLK--------SLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQ  394 (626)
T ss_pred             ---------------------------cccccccccc--------eEEEEeecCccCCcchHHHHHHhcCccchhhceee
Confidence                                       2222333222        89999999999999999999999987 69999999


Q ss_pred             cccCcceecccCCC-CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEec--C-CccccccCCcccchhhh---
Q 010774          418 TESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--N-TLFSGYYKRPDLTEEVI---  490 (501)
Q Consensus       418 tE~~~~~~~~~~~~-~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g--~-~v~~gY~~~~~~~~~~~---  490 (501)
                      ||+|+.++...... ..++++.|.|.+|+.+.|.| ++|++++.+. +.|+|+++.  | +.+++||+|++.-...+   
T Consensus       395 tEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k  472 (626)
T KOG1175|consen  395 TETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKK  472 (626)
T ss_pred             eccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhccc
Confidence            99999988877776 67789999999999999999 8898887765 799999998  3 78999999998444443   


Q ss_pred             ccCcccCCCCC
Q 010774          491 VDGWFHTEVHR  501 (501)
Q Consensus       491 ~dgw~~TGD~~  501 (501)
                      -.|+|.|||.+
T Consensus       473 ~pg~y~tGD~~  483 (626)
T KOG1175|consen  473 FPGYYFTGDGG  483 (626)
T ss_pred             CCceEEecCce
Confidence            37999999963

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-41  Score=325.65  Aligned_cols=388  Identities=16%  Similarity=0.156  Sum_probs=293.8

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....++.+.|..+++++|+++|+++.   +..    +++||+|+.++++++|+.|...|++.||.|+++|+|.+|++..+
T Consensus        74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~~----~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW  146 (649)
T KOG1179|consen   74 RERRTIAELFLSQVRRQPDKPAIIYE---GPF----QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW  146 (649)
T ss_pred             ccCCcHHHHHHHHHHhCCCccEEEEe---CCC----ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence            45689999999999999999999997   432    58999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      |+++++|++...||+++..+-+.+.++.++++++|++.+....+.+..+......-.++..+.....         ....
T Consensus       147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~---------~g~~  217 (649)
T KOG1179|consen  147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP---------DGIE  217 (649)
T ss_pred             HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC---------chHH
Confidence            9999999999999999999999999999999999999998877766633332222333333322211         1122


Q ss_pred             eHHHHHhcC-CCC---CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecCh
Q 010774          200 SWEEFLQLG-TLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL  275 (501)
Q Consensus       200 ~~~~~~~~~-~~~---~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  275 (501)
                      ++...++.. ..+   ......+..++++++|||||||.||+++++|..++.....+...+     +++.+|+++..+|+
T Consensus       218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPL  292 (649)
T KOG1179|consen  218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPL  292 (649)
T ss_pred             HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchh
Confidence            333333333 111   112334567889999999999999999999999888887666666     89999999999999


Q ss_pred             HHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010774          276 AHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (501)
Q Consensus       276 ~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (501)
                      +|..|.+. +..+|..|+|+++-.. ++..+++.+.+|+||++...-.+++.|+++                        
T Consensus       293 YHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~------------------------  348 (649)
T KOG1179|consen  293 YHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQ------------------------  348 (649)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcC------------------------
Confidence            99999886 8899999999999875 999999999999999999999999998862                        


Q ss_pred             hhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCC-eeeeecccccCcceecccCCCC
Q 010774          354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSLADVF  432 (501)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~-l~~~yG~tE~~~~~~~~~~~~~  432 (501)
                                   |......-        +.+|.++  |.-+.+++.+.|.++||.. +.+.||+||...... +   ..
T Consensus       349 -------------p~~~~er~--------HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~-N---~d  401 (649)
T KOG1179|consen  349 -------------PPSPEERQ--------HKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLV-N---YD  401 (649)
T ss_pred             -------------CCChhhcC--------ceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceee-e---ec
Confidence                         22221111        3677665  6778899999999999875 999999999654322 2   23


Q ss_pred             cccCccccc------ccCeEEEEeecCCCCc--------cCCCCCCCceEEEe--cCCc---cccccCCcccchhhh---
Q 010774          433 NMIGTVGVP------MTTVEARLESVPEMGY--------DALSSVPRGEICLR--GNTL---FSGYYKRPDLTEEVI---  490 (501)
Q Consensus       433 ~~~~s~G~p------~p~~~i~I~d~~~~~~--------~~~~~~~~Gei~v~--g~~v---~~gY~~~~~~~~~~~---  490 (501)
                      ...|.+|+.      +--.++.=+|..++++        .++.+||+|.++-+  ...-   |.||.+..+.|++..   
T Consensus       402 ~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rD  481 (649)
T KOG1179|consen  402 GRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRD  481 (649)
T ss_pred             CccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHh
Confidence            334556542      1122222233133322        34556688865543  2233   899999777775543   


Q ss_pred             ----ccCcccCCC
Q 010774          491 ----VDGWFHTEV  499 (501)
Q Consensus       491 ----~dgw~~TGD  499 (501)
                          .|-||.|||
T Consensus       482 VFkkGD~~f~tGD  494 (649)
T KOG1179|consen  482 VFKKGDVYFNTGD  494 (649)
T ss_pred             hhccCcEEEeeCc
Confidence                345999998

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4.6e-42  Score=354.19  Aligned_cols=335  Identities=17%  Similarity=0.110  Sum_probs=242.5

Q ss_pred             cCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh------hhhhhcCccCCCCccEEEEecC
Q 010774          109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI------PSILSCLPRCCLYLKTIVSFAN  182 (501)
Q Consensus       109 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~------~~~~~~~~~~~~~~~~v~~~~~  182 (501)
                      ++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+++...      +.+......  .....++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~   78 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEA--APAKAIVLPAA   78 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhc--ccceEEEEecc
Confidence            5899999999999999999999999999999999999999999999986431      111111110  11122222111


Q ss_pred             CChhhHHHhhhcCceEeeHHHHHhcCC-----C--CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhccee
Q 010774          183 VSSSQKKEAEELGVSCFSWEEFLQLGT-----L--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM  255 (501)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~  255 (501)
                      ..... .   ........+++++....     .  .......+++++++|+|||||||.||||++||.+++.........
T Consensus        79 ~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         79 GEPVA-V---PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             CcccC-C---ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            10000 0   00001224555542110     0  111112346889999999999999999999999988766544333


Q ss_pred             eeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHH
Q 010774          256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  333 (501)
Q Consensus       256 ~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  333 (501)
                      +     .+..+|++++.+|++|.+++..++.+++.|+++++.+.  ++..+++.|+++++|+++++|++++.+++..   
T Consensus       155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~---  226 (499)
T PLN03051        155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTG---  226 (499)
T ss_pred             c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcC---
Confidence            3     67788999999999999997778889999999998863  7889999999999999999999999886521   


Q ss_pred             hhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh--CCCe
Q 010774          334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPL  411 (501)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~--~~~l  411 (501)
                                                      .......+++        +||.+++||+++++++.+++++.+  ++.+
T Consensus       227 --------------------------------~~~~~~~~~~--------~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~  266 (499)
T PLN03051        227 --------------------------------AFAMEGLDWS--------KLRVFASTGEASAVDDVLWLSSVRGYYKPV  266 (499)
T ss_pred             --------------------------------ccccccCCch--------hheEEEecCCCCCHHHHHHHHHhcccccee
Confidence                                            0001122233        899999999999999998887733  4789


Q ss_pred             eeeecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCc--cccccCCcccchhh
Q 010774          412 TQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTL--FSGYYKRPDLTEEV  489 (501)
Q Consensus       412 ~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v--~~gY~~~~~~~~~~  489 (501)
                      ++.||+||++..++..........+++|+|.+|++++|+| +++++++.|.+++|||+|+||.+  +.|||+++ .++ .
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~-~  343 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HDK-V  343 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-ccc-e
Confidence            9999999987544433222233458999999999999999 88988877644689999999976  58999765 333 3


Q ss_pred             hccC----------cccCCCC
Q 010774          490 IVDG----------WFHTEVH  500 (501)
Q Consensus       490 ~~dg----------w~~TGD~  500 (501)
                      +.+|          ||+|||.
T Consensus       344 ~~~g~~~~~~~~~~~~~TGDl  364 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHGDI  364 (499)
T ss_pred             eeecCCccccCCcceeecCCe
Confidence            3344          6899995

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.6e-41  Score=369.00  Aligned_cols=378  Identities=15%  Similarity=0.146  Sum_probs=268.3

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....++.+.|.++++.+|+++|+++.   +      +.+||+||.++++++|++|.++|+++||+|+|+++|++++++++
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~  514 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI  514 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            34467999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      |||+++|++++|++|.   .++.++++.++++++|++.+....+...       ...+++++..........  ......
T Consensus       515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~~~~--~~~~~~  582 (994)
T PRK07868        515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDLDLP--DDADVI  582 (994)
T ss_pred             HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCccccccCC--cchhhh
Confidence            9999999999999984   6899999999999999987766544221       134444432111000000  000011


Q ss_pred             eHHHHHhcCCC-C--CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChH
Q 010774          200 SWEEFLQLGTL-D--CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (501)
Q Consensus       200 ~~~~~~~~~~~-~--~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (501)
                      .++++...... +  ....+..++++++|+|| ||||.||++.++|.+...........+     .+..+|++++.+|++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~  656 (994)
T PRK07868        583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH  656 (994)
T ss_pred             hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence            11111110000 0  01112235789999998 577778888888877655444433333     678899999999999


Q ss_pred             HHHHHHHHH-HHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          277 HIYDQIIET-HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       277 ~~~g~~~~~-~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      |.+++...+ .++..|+++++.+. ++..+++.|+++++|+++++|++++.+++..                        
T Consensus       657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~------------------------  712 (994)
T PRK07868        657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDP------------------------  712 (994)
T ss_pred             HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCc------------------------
Confidence            999998644 55666666666554 9999999999999999999999999887520                        


Q ss_pred             hhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC-CCeeeeecccccCcceecccCCCCc
Q 010774          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADVFN  433 (501)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~-~~l~~~yG~tE~~~~~~~~~~~~~~  433 (501)
                                   .....++        +++|.++  |+.+++++.+++.+.++ +.+++.||+||++.++. ..  ...
T Consensus       713 -------------~~~~~~~--------~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~~--~~~  766 (994)
T PRK07868        713 -------------AFVLHGN--------HPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-NV--SGA  766 (994)
T ss_pred             -------------CCccCCC--------CceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccc-cc--CCC
Confidence                         0000111        3788766  34499999999999886 78999999999875433 21  123


Q ss_pred             ccCcccccccCe-EEEEe-----------ecCCCCccCCCCCCCceEEEecCCccccccCCcccc--hhhh--ccCcccC
Q 010774          434 MIGTVGVPMTTV-EARLE-----------SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT--EEVI--VDGWFHT  497 (501)
Q Consensus       434 ~~~s~G~p~p~~-~i~I~-----------d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~--~~~~--~dgw~~T  497 (501)
                      +++++|+|+||+ +++|.           | ++|....+..++.|||+++|+..    + +|+.+  +..|  .||||+|
T Consensus       767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d-~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~T  840 (994)
T PRK07868        767 KIGSKGRPLPGAGRVELAAYDPEHDLILED-DRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWIST  840 (994)
T ss_pred             CCcccCCccCCCCceeEEEecCcCCceeec-CCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEec
Confidence            458999999998 77764           3 33411122345899999999864    3 34332  2223  3799999


Q ss_pred             CCC
Q 010774          498 EVH  500 (501)
Q Consensus       498 GD~  500 (501)
                      ||.
T Consensus       841 GDl  843 (994)
T PRK07868        841 EYL  843 (994)
T ss_pred             cce
Confidence            995

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-38  Score=318.55  Aligned_cols=290  Identities=17%  Similarity=0.176  Sum_probs=243.2

Q ss_pred             EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEE
Q 010774           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (501)
Q Consensus        76 ~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~  155 (501)
                      +.+||+||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..+++.++++.+++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            48999999999999999985 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCC
Q 010774          156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEP  235 (501)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~P  235 (501)
                      ++....                  ..                               ......++++++++|||||||.|
T Consensus        86 ~~~~~~------------------~~-------------------------------~~~~~~~~~~~~i~~TSGtTG~P  116 (414)
T PRK08308         86 GESDFT------------------KL-------------------------------EAVNYLAEEPSLLQYSSGTTGEP  116 (414)
T ss_pred             cCcccc------------------cc-------------------------------cCCCCCCCCceEEEECCCCCCCC
Confidence            663110                  00                               00112457889999999999999


Q ss_pred             ceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcC
Q 010774          236 KGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKP  313 (501)
Q Consensus       236 K~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~  313 (501)
                      |+|.+||.++.+.+..+...+     ....+|+++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++
T Consensus       117 Kgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~  191 (414)
T PRK08308        117 KLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQ  191 (414)
T ss_pred             cEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCC
Confidence            999999999998888766655     6778899999999999999875 7889999999988875 99999999999999


Q ss_pred             cEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecC
Q 010774          314 TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA  393 (501)
Q Consensus       314 t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~  393 (501)
                      |.++++|.++..+.+...                                      ..           .+++.+++||+
T Consensus       192 t~~~~~P~~~~~l~~~~~--------------------------------------~~-----------~~l~~~~~~G~  222 (414)
T PRK08308        192 HILYAVPLMLHILGRLLP--------------------------------------GT-----------FQFHAVMTSGT  222 (414)
T ss_pred             eEEEcCHHHHHHHHhcCC--------------------------------------cc-----------ccccEEEEccC
Confidence            999999999998865210                                      00           16788999999


Q ss_pred             CCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecC
Q 010774          394 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN  473 (501)
Q Consensus       394 ~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~  473 (501)
                      ++++++.+++++. +.++++.||+||++.+....   ....++++|+|+|++++++.+ ++        ++.|||++++.
T Consensus       223 ~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~---~~~~~~~~G~p~~~~~~~~~~-~~--------~~~gel~v~~~  289 (414)
T PRK08308        223 PLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICP---DMKSHLDLGNPLPHVSVSAGS-DE--------NAPEEIVVKMG  289 (414)
T ss_pred             CCCHHHHHHHHHh-CChhhhccCccccCCeeecC---CCCCCCccCccCCCeEEEEec-CC--------CCCceEEEEcC
Confidence            9999999999886 67899999999998544321   123457899999999999976 32        25799999752


Q ss_pred             CccccccCCcccchhhhccCcccCCCC
Q 010774          474 TLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       474 ~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                                        ++||+|||.
T Consensus       290 ------------------~~~~~TGDl  298 (414)
T PRK08308        290 ------------------DKEIFTKDL  298 (414)
T ss_pred             ------------------CceEECCce
Confidence                              578999985

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.5e-33  Score=300.15  Aligned_cols=370  Identities=22%  Similarity=0.257  Sum_probs=297.6

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.+.|.+.+...|++.|+++.   +      ..+||+|+..+++++|+.|.+.|+.++++|+++++.+.++++.++|
T Consensus       226 ~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~  296 (642)
T COG1020         226 RLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLA  296 (642)
T ss_pred             cchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHH
Confidence            367999999999999999998764   2      4799999999999999999999999999999999889999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      ++++|+.++|++|.++.+++.++++.++++.+++.......... .       .. +.++...                .
T Consensus       297 ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~-~-------~~-~~~~~~~----------------~  351 (642)
T COG1020         297 VLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG-L-------PG-LALDDAL----------------S  351 (642)
T ss_pred             HHhcCCeEecCCCCChHHHHHHHHhhcCccEEEecccccccccc-C-------Cc-ccccccc----------------c
Confidence            99999999999999999999999999999999998332221100 0       00 1111000                0


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                      .    .............++.+|++|||||||.||||..+|+++.+.+.++...+     .....|+++...++.+....
T Consensus       352 ~----~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD~~~  422 (642)
T COG1020         352 E----IPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFDASV  422 (642)
T ss_pred             c----CCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccchhH
Confidence            0    00001111233458899999999999999999999999999888876666     78889999999999888887


Q ss_pred             HHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      ..++.++..|+++++...    ++..+.+.+.++++|++..+|.++..++........                      
T Consensus       423 ~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~----------------------  480 (642)
T COG1020         423 FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDL----------------------  480 (642)
T ss_pred             HHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccc----------------------
Confidence            789999999999998864    899999999999999999999999988752000000                      


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh--CCCeeeeecccccCcceecccCCCCcc-
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPLTQGYGLTESCSGCFTSLADVFNM-  434 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~-  434 (501)
                                      ..     ..+.+|.+++||+.++..+.+.+....  ...+.+.||+||+.............. 
T Consensus       481 ----------------~~-----~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~  539 (642)
T COG1020         481 ----------------IS-----PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELES  539 (642)
T ss_pred             ----------------cC-----CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCC
Confidence                            00     002489999999999999999888765  468999999999766554433322211 


Q ss_pred             cCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhcc-CcccCCCC
Q 010774          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD-GWFHTEVH  500 (501)
Q Consensus       435 ~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~d-gw~~TGD~  500 (501)
                      ...+|+|++|+.+.|.| ...+.+|.+  ..||+++.|.++..||+++++.|.+.|.. .+|+|||.
T Consensus       540 ~~piG~p~~n~~~~ild-~~~~~~p~g--v~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~  603 (642)
T COG1020         540 RVPIGRPVANTQLYILD-QGLRPLPLG--VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDL  603 (642)
T ss_pred             CCCcceeeCCCeEEEEC-CCCCcCCCC--CCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCe
Confidence            36799999999999999 888888887  78999999999999999999999999944 59999995

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.96  E-value=1.9e-27  Score=242.01  Aligned_cols=399  Identities=11%  Similarity=0.071  Sum_probs=283.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      .++.|+|+.+++.+|+.+|+...   +..+....++||.+|+.++.+++.+|... -+++||+|++++++++|++++++|
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~  846 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA  846 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence            68999999999999999999988   77777778999999999999999999976 489999999999999999999999


Q ss_pred             HHhcCCEEEEecCCC------CHHHHHHHHHhcCceEEEEcCCChhhhhhcCccC---CCCccEEEEecCCChhhHHHhh
Q 010774          122 CNSQAITYVPLYDTL------GANAVEFIINHAEVSIAFVQENKIPSILSCLPRC---CLYLKTIVSFANVSSSQKKEAE  192 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~------~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~  192 (501)
                      |+.+|.+++|+.|.-      ....+..+++.+++++|+++......+...-...   ...+..++.+.+......    
T Consensus       847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~~----  922 (1363)
T KOG3628|consen  847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETIR----  922 (1363)
T ss_pred             HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhhh----
Confidence            999999999998753      4457888999999999999987554432211100   011222323332221000    


Q ss_pred             hcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEe
Q 010774          193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF  272 (501)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (501)
                            .......+. ....++...+.+.+|++.|.--++|.--++.++|.++++.++.....+     .+.++.-++..
T Consensus       923 ------k~~~~~~k~-~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl~~~  990 (1363)
T KOG3628|consen  923 ------KRKKNIKKL-NTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPLLGC  990 (1363)
T ss_pred             ------hhhhhhhcc-CCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCceEEE
Confidence                  001111111 112223334678899999999999999999999999999999988877     55555556666


Q ss_pred             cChHHHHHHH-HHHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHH
Q 010774          273 LPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (501)
Q Consensus       273 ~pl~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (501)
                      .+.+...|+. +++..++.|.+.++++.     ++..|++.+.++|+.-++.+-..++.+.++++...+...        
T Consensus       991 ~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~-------- 1062 (1363)
T KOG3628|consen  991 SSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLS-------- 1062 (1363)
T ss_pred             ecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhh--------
Confidence            6666666666 69999999999888765     999999999999999999999999888775544322111        


Q ss_pred             HHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh---CC---Ceeeeeccccc
Q 010774          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS---GA---PLTQGYGLTES  420 (501)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~---~~---~l~~~yG~tE~  420 (501)
                                            ...+++         +-..++..-+.....+.+.|.+.|   |.   .+...|++---
T Consensus      1063 ----------------------~~gnn~---------s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~N 1111 (1363)
T KOG3628|consen 1063 ----------------------KRGNNT---------SSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVN 1111 (1363)
T ss_pred             ----------------------hhhccc---------ccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCC
Confidence                                  111111         125566666777777888777776   22   35556665544


Q ss_pred             CcceecccCCCC--------------------------cccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCC
Q 010774          421 CSGCFTSLADVF--------------------------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNT  474 (501)
Q Consensus       421 ~~~~~~~~~~~~--------------------------~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~  474 (501)
                      -.+|..+..+.+                          -.....|+..+++++.|++ |+++ .|+..++.||||++|++
T Consensus      1112 p~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-PEtk-~pc~dge~GEIW~~S~h 1189 (1363)
T KOG3628|consen 1112 PFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN-PETK-GPCRDGELGEIWVNSAH 1189 (1363)
T ss_pred             hHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC-Cccc-cccccCCcceEEecccc
Confidence            334333211110                          0011258888999999999 7766 67777799999999999


Q ss_pred             ccccccCCccc-chhhh----------ccCcccCCCCC
Q 010774          475 LFSGYYKRPDL-TEEVI----------VDGWFHTEVHR  501 (501)
Q Consensus       475 v~~gY~~~~~~-~~~~~----------~dgw~~TGD~~  501 (501)
                      -+.+|++..+. ....|          ..+|-||||-+
T Consensus      1190 nA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LG 1227 (1363)
T KOG3628|consen 1190 NASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLG 1227 (1363)
T ss_pred             ccccccccCchhhhhhhhhhccccccccccceeeeeee
Confidence            98888764322 22222          12599999853

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.95  E-value=8.6e-27  Score=230.41  Aligned_cols=203  Identities=28%  Similarity=0.420  Sum_probs=163.7

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEE
Q 010774          217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF  296 (501)
Q Consensus       217 ~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~  296 (501)
                      ..++++++++|||||||.||+|.++|.++..........+       ...++++..+|++|.+++..++.+++.|+++++
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-------~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~  104 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL-------GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVE  104 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc-------CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEe
Confidence            3468899999999999999999999999998887654433       345688999999999998888889999999887


Q ss_pred             ec----CCHHHHHHHHhhhc--CcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHH
Q 010774          297 WR----GDVRYLMEDIQELK--PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD  370 (501)
Q Consensus       297 ~~----~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (501)
                      ..    .++..+++.+++++  .++...+|..+..++...                                     . .
T Consensus       105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~-------------------------------------~-~  146 (358)
T PRK07824        105 LDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDP-------------------------------------A-A  146 (358)
T ss_pred             cCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCc-------------------------------------c-c
Confidence            32    28999999999998  456667887776654310                                     0 0


Q ss_pred             HHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEe
Q 010774          371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLE  450 (501)
Q Consensus       371 ~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~  450 (501)
                      ..++        .++|.+++||+++++++.+++.+. ++.+++.||+||++..+.           ..|+|+++++++|.
T Consensus       147 ~~~~--------~~l~~i~~gG~~l~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~-----------~~G~~~~g~~v~i~  206 (358)
T PRK07824        147 TAAL--------AELDAVLVGGGPAPAPVLDAAAAA-GINVVRTYGMSETSGGCV-----------YDGVPLDGVRVRVE  206 (358)
T ss_pred             cCCc--------ccceEEEECCCCCCHHHHHHHHhc-CCcEEecccCCccCCCcC-----------cCceeCCCCEEEec
Confidence            0011        389999999999999999998864 999999999999876442           35899999999984


Q ss_pred             ecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          451 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       451 d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      +              |||+++|+.++.||+++++.+  .+ .+|||+|||.
T Consensus       207 ~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl  241 (358)
T PRK07824        207 D--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDL  241 (358)
T ss_pred             C--------------CEEEEecCccccccCCCcccc--cccCCCceecccE
Confidence            4              999999999999999988743  34 6789999995

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.95  E-value=5e-26  Score=207.82  Aligned_cols=222  Identities=13%  Similarity=0.069  Sum_probs=163.5

Q ss_pred             HHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 010774           49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQAI  127 (501)
Q Consensus        49 l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~  127 (501)
                      |...++.+|+++|+++.   ++.++..+.+||+||.++++++|++|++ .|+++||+|+|+++|+++++++++||+++|+
T Consensus         2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            56788899999999865   3322123579999999999999999998 7999999999999999999999999999999


Q ss_pred             EEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHhc
Q 010774          128 TYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQL  207 (501)
Q Consensus       128 ~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (501)
                      +++|+|             .+++++++++.+....+. .     .  +.++.+......... ..........+.+.+..
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-~-----~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  136 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAA-G-----S--GEVVALSLDPLGRRV-AGELPPGVIDFAPEVRV  136 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhcc-c-----C--CceEEEeccccccCC-CCCCCCcccchhhhhhc
Confidence            999995             689999999987766542 1     1  222222110000000 00001122355555543


Q ss_pred             CCCCCCCC-CCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHH-HH
Q 010774          208 GTLDCELP-PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET  285 (501)
Q Consensus       208 ~~~~~~~~-~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~  285 (501)
                      ........ ...++++++|+||||+         +|.+++...    ..+     ++..+|+++ .+|++|.+|+.. ++
T Consensus       137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~  197 (227)
T TIGR03089       137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLATLL  197 (227)
T ss_pred             cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHHHH
Confidence            32222222 3456899999999985         566655554    222     678899999 999999999975 88


Q ss_pred             HHHhcCcEEEEec-CCHHHHHHHHhhhcCc
Q 010774          286 HCIHKGCSIGFWR-GDVRYLMEDIQELKPT  314 (501)
Q Consensus       286 ~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t  314 (501)
                      .+|+.|+++++.+ +++..+++.|+++|||
T Consensus       198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       198 APLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            9999999998886 4999999999999997

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.90  E-value=1.2e-22  Score=205.11  Aligned_cols=219  Identities=17%  Similarity=0.142  Sum_probs=157.6

Q ss_pred             CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHH-HHHHHHhcCcEEEE
Q 010774          218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGF  296 (501)
Q Consensus       218 ~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~-~~~~~l~~G~~~~~  296 (501)
                      +.++++.+++||||||.||++.++|.++......+...+  ...+...+|++++..++.+..+.. ..+.++..|++++.
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~--~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  150 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSI--RAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP  150 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHH--HHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence            456788899999999999999999999876543322211  112567889988876654433333 35567888999887


Q ss_pred             ecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHH
Q 010774          297 WRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS  375 (501)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  375 (501)
                      .+. ++..+++.|+++++|+++++|+++..|++.+........                                   . 
T Consensus       151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~-----------------------------------~-  194 (422)
T TIGR02155       151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA-----------------------------------Q-  194 (422)
T ss_pred             cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc-----------------------------------c-
Confidence            654 789999999999999999999999998865432110000                                   0 


Q ss_pred             HHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcc-eecccCCCCcccCcccccc--cCeEEEEeec
Q 010774          376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPM--TTVEARLESV  452 (501)
Q Consensus       376 ~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~-~~~~~~~~~~~~~s~G~p~--p~~~i~I~d~  452 (501)
                             .++|.+++||+++++++.+.+++.||+.+++.||+||+++. +......     ...|.++  +++.++|+|.
T Consensus       195 -------~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~-----~~~g~~~~~~~~~~eivd~  262 (422)
T TIGR02155       195 -------TSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE-----TQDGLHIWEDHFYPEIIDP  262 (422)
T ss_pred             -------CceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc-----cCCCceEecCeeEEEEECC
Confidence                   27999999999999999999999999999999999998532 2221111     1123343  3578889993


Q ss_pred             CCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +++.+++.|  +.|||++++.            +...+..+||+|||.
T Consensus       263 ~~g~~v~~G--e~Gelvvt~~------------~~~~~p~~ry~TGDl  296 (422)
T TIGR02155       263 HTGEVLPDG--EEGELVFTTL------------TKEALPVIRYRTRDL  296 (422)
T ss_pred             CCCCCCCCC--CeeEEEEecC------------CccccceeeEEcCcE
Confidence            466666655  8999999873            234456789999994

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.82  E-value=1.3e-19  Score=178.74  Aligned_cols=166  Identities=17%  Similarity=0.175  Sum_probs=130.1

Q ss_pred             CCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccC--CCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEE
Q 010774          220 TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGF  296 (501)
Q Consensus       220 ~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~  296 (501)
                      +..++++|||||||.||+|.+||+++.+....+...+     +.  ...+++++.+|++|.+|+.+ ++.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            4568999999999999999999999998887766554     33  34468999999999999865 7788999999988


Q ss_pred             ecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHH
Q 010774          297 WRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS  375 (501)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  375 (501)
                      .+. ++..+++.++.+  |+++++|.+++.+++..                                         .++ 
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~-----------------------------------------~~l-  205 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD-----------------------------------------YRL-  205 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC-----------------------------------------cCC-
Confidence            764 777888877643  89999999999886410                                         011 


Q ss_pred             HHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCC-CeeeeecccccCcceecccCCCCcccCcccccccCeEEEE
Q 010774          376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL  449 (501)
Q Consensus       376 ~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~-~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I  449 (501)
                             ++++. ++||+++++++.+.+++. +. .+++.||+||++++++...      ++..|+++|++++++
T Consensus       206 -------~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~------~~~~~~~~p~~~~~~  265 (386)
T TIGR02372       206 -------PGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA------PDDPFRLLPDLACFA  265 (386)
T ss_pred             -------Cccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC------CCCCcccCCCccccC
Confidence                   25665 688999999999999886 64 6999999999987654321      244678889887765

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.80  E-value=2.3e-18  Score=174.13  Aligned_cols=201  Identities=17%  Similarity=0.139  Sum_probs=146.8

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEE
Q 010774          217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIG  295 (501)
Q Consensus       217 ~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~  295 (501)
                      .+.++++.+.+||||||.||+|.+||.++......+...+.  ..++..+|+++...|+.+..+... .+.+...|++++
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~--~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi  160 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFV--SQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSII  160 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHH--HcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEE
Confidence            34577889999999999999999999998776654433211  126778899999988877655543 566788888765


Q ss_pred             EecCCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHH
Q 010774          296 FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS  375 (501)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  375 (501)
                      .. ......++.++++++|.+.++|..+..+++.+.......                                   .. 
T Consensus       161 ~~-~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~-----------------------------------~~-  203 (445)
T TIGR03335       161 PE-GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDP-----------------------------------AE-  203 (445)
T ss_pred             cC-CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------cc-
Confidence            33 344567899999999999999998887776433211000                                   00 


Q ss_pred             HHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccc--cCeEEEEeecC
Q 010774          376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM--TTVEARLESVP  453 (501)
Q Consensus       376 ~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~--p~~~i~I~d~~  453 (501)
                             .++|.+++||+++++++.+.+.+.+|+.+++.||+||++..+.+..        ..|..+  +.+.++|+| +
T Consensus       204 -------~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~~~c~~--------~~g~h~~~d~~~vEIvD-p  267 (445)
T TIGR03335       204 -------SSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMCGECQA--------VAGLHVPEDLVHLDVYD-P  267 (445)
T ss_pred             -------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhheEEecC--------CCCccccCCceEEEEEc-C
Confidence                   2799999999999999999999989999999999999863322211        123333  457899999 6


Q ss_pred             CCC-ccCCCCCCCceEEEecCC
Q 010774          454 EMG-YDALSSVPRGEICLRGNT  474 (501)
Q Consensus       454 ~~~-~~~~~~~~~Gei~v~g~~  474 (501)
                      ++. +++.|  +.|||++++-.
T Consensus       268 ~~~~~vp~G--e~GELvvT~L~  287 (445)
T TIGR03335       268 RHQRFLPDG--ECGRIVLTTLL  287 (445)
T ss_pred             CCCCCCcCC--CceEEEEEecC
Confidence            655 35544  99999998753

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.72  E-value=2e-16  Score=167.27  Aligned_cols=325  Identities=15%  Similarity=0.091  Sum_probs=210.6

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      +.++...+.+.+...|..++..+.+. ....+.....||++....++.+++.|...|...|+.|++++..+.++++..++
T Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~  113 (1032)
T KOG1178|consen   35 MGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFA  113 (1032)
T ss_pred             hcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeee
Confidence            34667788999999999998877633 23344556899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCC----HHHHHH---HHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhc
Q 010774          122 CNSQAITYVPLYDTLG----ANAVEF---IINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~----~~~l~~---~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  194 (501)
                      .+++|..+++++|.++    ++++..   .+......+  ...  .+.........    ..-..+              
T Consensus       114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i--~~~--l~i~~~~~~~~----~~~~sv--------------  171 (1032)
T KOG1178|consen  114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEI--VRR--LNIIDILLNSL----FPKLSV--------------  171 (1032)
T ss_pred             hhhcceEEEEecCCCcccccchHHHhhhhhheecccee--hhh--hhhHHHHhhcc----ccccch--------------
Confidence            9999999999999999    222111   111111000  000  00000000000    000000              


Q ss_pred             CceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecC
Q 010774          195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (501)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p  274 (501)
                      ......+..+. ............++..+++.||||+||.||+|..+|..++....++...+     ..+.++.+-....
T Consensus       172 ~~~~~~f~~~~-~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-----~~t~s~~~~~~~~  245 (1032)
T KOG1178|consen  172 ETIADSFQMVL-HNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-----PPTGSDRFTFKTS  245 (1032)
T ss_pred             hhccchhhhhh-ccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-----CcCccchhhhhhe
Confidence            00001111111 11222223344567789999999999999999999999999999988877     6666665422222


Q ss_pred             h-HHHHHHHHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 010774          275 L-AHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAY  349 (501)
Q Consensus       275 l-~~~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (501)
                      . ++..-..+..+.|..|+.+..+..    .+..+.+.+++++++..+.+|++++.++.....-..              
T Consensus       246 ~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~--------------  311 (1032)
T KOG1178|consen  246 VYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLP--------------  311 (1032)
T ss_pred             eecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchh--------------
Confidence            2 333333356667788887766543    589999999999999999999999988763211000              


Q ss_pred             HHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecc
Q 010774          350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTS  427 (501)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~  427 (501)
                                   .    .....-++++.... +.|+....+|++....+...+...+ -..+..-|++++..+-++..
T Consensus       312 -------------~----l~~~~~~~dl~~~~-~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~  372 (1032)
T KOG1178|consen  312 -------------L----LEHAFSLSDLLTKR-SCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYD  372 (1032)
T ss_pred             -------------h----hhhhhhcccccccc-hhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHH
Confidence                         0    00000000000000 2689999999999999988666654 22333449999887766543

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.68  E-value=9.1e-16  Score=157.73  Aligned_cols=387  Identities=15%  Similarity=0.119  Sum_probs=258.0

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHH-HHHhCCCCCCCEEEEEcCCc--hhHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGS-AMRSRGVNPGDRCGIYGSNC--PEWIIA  118 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~-~L~~~gv~~gd~V~i~~~n~--~~~~~~  118 (501)
                      +..+...+++.-.+++..+|.++.   |.++. ...+||..+..++.++|+ .|.+.|+.++|+|.++...+  +++++.
T Consensus        93 ~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~is  168 (1363)
T KOG3628|consen   93 LTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLIS  168 (1363)
T ss_pred             hcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhh
Confidence            345677788887889999999998   76666 789999999999999999 67788999999999999976  899999


Q ss_pred             HHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceE
Q 010774          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (501)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  198 (501)
                      .++|...|..++|+++..+.+++..+++....+++++..............              ....+...   .+..
T Consensus       169 l~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~--------------~s~~k~v~---~w~t  231 (1363)
T KOG3628|consen  169 LFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSP--------------VSLAKAVA---WWKT  231 (1363)
T ss_pred             hccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCc--------------ccHHHHHH---hhhc
Confidence            999999999999999999999999999999999999988766554322200              00000000   0000


Q ss_pred             eeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeee---------------ecccc
Q 010774          199 FSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV---------------VTGKV  262 (501)
Q Consensus       199 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~---------------~~~~~  262 (501)
                      ..+.   .... .....+...-. .++|-||++++|.--|++++|. ++.+.+.+.....               ..-..
T Consensus       232 ~~~k---~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~  306 (1363)
T KOG3628|consen  232 NDFK---GNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFP  306 (1363)
T ss_pred             cccc---ceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccc
Confidence            0010   0000 00011111122 7899999999999999999998 7766655433221               01123


Q ss_pred             CCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcC
Q 010774          263 CSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG  337 (501)
Q Consensus       263 ~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  337 (501)
                      ....++++.........|+++ ++.+|+.|.+.+.++.    .+..+.+.+.++|++++..-...+...+..++..    
T Consensus       307 ~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~----  382 (1363)
T KOG3628|consen  307 VPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQED----  382 (1363)
T ss_pred             cCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCC----
Confidence            456667777777777778886 8899999999998875    6788889999999999887666665544322221    


Q ss_pred             ChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh----h------
Q 010774          338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----S------  407 (501)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~----~------  407 (501)
                                                    ....+++++-.+.-.+++|.+.+.-..+.++..+....+    .      
T Consensus       383 ------------------------------p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~  432 (1363)
T KOG3628|consen  383 ------------------------------PKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVK  432 (1363)
T ss_pred             ------------------------------cccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcc
Confidence                                          111111222121222589999999999888765543332    1      


Q ss_pred             ------------CCCeeeeecccccCcceecccCCCC-----------------------------cccCcccccccC-e
Q 010774          408 ------------GAPLTQGYGLTESCSGCFTSLADVF-----------------------------NMIGTVGVPMTT-V  445 (501)
Q Consensus       408 ------------~~~l~~~yG~tE~~~~~~~~~~~~~-----------------------------~~~~s~G~p~p~-~  445 (501)
                                  |.-....=+++|.+......+.+..                             .....+|...|| +
T Consensus       433 ~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~  512 (1363)
T KOG3628|consen  433 VVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDA  512 (1363)
T ss_pred             eeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccce
Confidence                        2212222333555544333322110                             001125666665 4


Q ss_pred             EEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh
Q 010774          446 EARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  490 (501)
Q Consensus       446 ~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~  490 (501)
                      .+.|++ ||. ..-|..+++|||||.++++..+||.-+..|...|
T Consensus       513 t~~vv~-~~t-~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F  555 (1363)
T KOG3628|consen  513 TLAVVN-PDT-NQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTF  555 (1363)
T ss_pred             EEEEeC-CCc-ccccccCcceeEEEecCCcccceeeccccccceE
Confidence            566666 433 3555666999999999999999999888887766

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.60  E-value=4.9e-14  Score=136.16  Aligned_cols=208  Identities=16%  Similarity=0.091  Sum_probs=151.5

Q ss_pred             CCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChH-HHHHHHHHHHHHhcCc
Q 010774          214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA-HIYDQIIETHCIHKGC  292 (501)
Q Consensus       214 ~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~-~~~g~~~~~~~l~~G~  292 (501)
                      ......++...|--||||||.|+-+.+++..+......+.+.+  ...+...+|++....-+. +..|+..-+++--.|+
T Consensus        84 ~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~--~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~  161 (438)
T COG1541          84 DFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSL--YSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGA  161 (438)
T ss_pred             cccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHH--HHccCCCCCEEEEEeeeccccCCchhHHHHHhhCE
Confidence            3444556777799999999999999999998888777766644  233677888877664421 1223334455555777


Q ss_pred             EEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHH
Q 010774          293 SIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS  371 (501)
Q Consensus       293 ~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (501)
                      +++=... +.+..++.+..+++|++.++|+.+..+++.+.....                                  +.
T Consensus       162 ~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~----------------------------------~~  207 (438)
T COG1541         162 TVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGI----------------------------------DP  207 (438)
T ss_pred             EEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCC----------------------------------Ch
Confidence            7665544 889999999999999999999999999987766531                                  11


Q ss_pred             HHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEee
Q 010774          372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLES  451 (501)
Q Consensus       372 ~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d  451 (501)
                      .+         .++|.+++|+|++++++.+.+.+.||+..++.||+||..+.........    .-.-..-...-+.|+|
T Consensus       208 ~~---------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~----~glhi~eD~~~~Ei~d  274 (438)
T COG1541         208 DK---------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTER----NGLHIWEDHFIFEIVD  274 (438)
T ss_pred             hh---------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCcccccccc----cCCCcchhhceeeeec
Confidence            11         2899999999999999999999999999999999999977631111110    1111233677889999


Q ss_pred             cCCCCccCCCCCCCceEEEec
Q 010774          452 VPEMGYDALSSVPRGEICLRG  472 (501)
Q Consensus       452 ~~~~~~~~~~~~~~Gei~v~g  472 (501)
                      +.++..++.|  +.|||++..
T Consensus       275 P~t~e~l~dg--e~GelV~T~  293 (438)
T COG1541         275 PETGEQLPDG--ERGELVITT  293 (438)
T ss_pred             CCcCccCCCC--CeeEEEEEe
Confidence            5555555554  889999876

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.04  E-value=8.8e-09  Score=102.44  Aligned_cols=146  Identities=16%  Similarity=0.145  Sum_probs=99.6

Q ss_pred             EEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEec-ChHHHHHHHHHHHHHhcC-cEEEEec--
Q 010774          223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL-PLAHIYDQIIETHCIHKG-CSIGFWR--  298 (501)
Q Consensus       223 ~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~-pl~~~~g~~~~~~~l~~G-~~~~~~~--  298 (501)
                      ..+..||||||.|-.+..+..........+...+  ...+...++++.... .-.+.+.      .+... ..+....  
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~--~~~g~~~g~r~a~~~~~~~~ly~------~~~~~~~~~~~~~l~  173 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKV--LPDGLFAKHRIAFFLRADNNLYQ------SVNNRWISLDFFDLL  173 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhh--CccccccCCcEEEEEccChhHHH------HHHhccceeeecCCC
Confidence            5577899999999999999987654433322211  111344445444441 1112221      11111 1122221  


Q ss_pred             CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHH
Q 010774          299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR  378 (501)
Q Consensus       299 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  378 (501)
                      .+...+++.|.+++|+.+.+.|+.+..|+++.+....                                  +        
T Consensus       174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l----------------------------------~--------  211 (430)
T TIGR02304       174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL----------------------------------T--------  211 (430)
T ss_pred             cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC----------------------------------C--------
Confidence            3788999999999999999999999999886543210                                  0        


Q ss_pred             HHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcc
Q 010774          379 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG  423 (501)
Q Consensus       379 ~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~  423 (501)
                          .+++.++++||+++++..+.+++.||+++++.||+|| |.+
T Consensus       212 ----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~l  251 (430)
T TIGR02304       212 ----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFL  251 (430)
T ss_pred             ----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hhe
Confidence                1689999999999999999999999999999999999 544

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.29  E-value=4.2e-05  Score=74.62  Aligned_cols=204  Identities=13%  Similarity=0.106  Sum_probs=113.5

Q ss_pred             CCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHH---HHH--HHHHHHHhcCcE
Q 010774          219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI---YDQ--IIETHCIHKGCS  293 (501)
Q Consensus       219 ~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~---~g~--~~~~~~l~~G~~  293 (501)
                      .+++..++-||||||.|--+.+.+..+..+...+...+..........-.++...|-...   .+.  ...+..+..+..
T Consensus        88 ~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~~  167 (365)
T PF04443_consen   88 EEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGSR  167 (365)
T ss_pred             hhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCce
Confidence            456678899999999986666666666655544433321101011122334444444221   111  112333445555


Q ss_pred             EEEecC--CHHHHHHHH----hhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcch
Q 010774          294 IGFWRG--DVRYLMEDI----QELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP  367 (501)
Q Consensus       294 ~~~~~~--~~~~~~~~i----~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (501)
                      ..+-..  +...++..+    .+.++-.+++.|.++-.++..+++......                             
T Consensus       168 ~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~-----------------------------  218 (365)
T PF04443_consen  168 FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR-----------------------------  218 (365)
T ss_pred             eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc-----------------------------
Confidence            343222  566555555    356678899988877777665444321111                             


Q ss_pred             hHHHHHHHHHHHHhCCceeEEEEec------CCCC-HHHHHHHHHhhCC----CeeeeecccccCcceecccCCCCcccC
Q 010774          368 LLDSLVFSKIREAFGGRLQAMLSGA------APLP-IHVEEFLRVTSGA----PLTQGYGLTESCSGCFTSLADVFNMIG  436 (501)
Q Consensus       368 ~~~~~~l~~~~~~~~~~lr~~~~gG------~~~~-~~~~~~~~~~~~~----~l~~~yG~tE~~~~~~~~~~~~~~~~~  436 (501)
                            |       .+..+.+..||      +.++ .++.+.+.+.||+    .+++.||+||.....+....      +
T Consensus       219 ------L-------~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~------~  279 (365)
T PF04443_consen  219 ------L-------PKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGH------G  279 (365)
T ss_pred             ------C-------CCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCC------C
Confidence                  0       01445566665      5575 4677788888887    69999999997654332211      1


Q ss_pred             cccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCc
Q 010774          437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTL  475 (501)
Q Consensus       437 s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v  475 (501)
                      ..  ..|-- |.|+|+.+..+++.  |+.|-|-+-.+..
T Consensus       280 ~~--~~p~w-V~iRDp~tl~~~~~--Ge~Gli~vidl~~  313 (365)
T PF04443_consen  280 HF--HVPPW-VIIRDPETLEPLPP--GETGLIQVIDLAN  313 (365)
T ss_pred             cc--cCCCe-EEEECCCCCcCCCC--CCeeEEEEEcccc
Confidence            11  22222 77778444455544  5899999887644

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=95.07  E-value=0.17  Score=50.06  Aligned_cols=109  Identities=13%  Similarity=-0.002  Sum_probs=83.4

Q ss_pred             EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 010774           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA  153 (501)
Q Consensus        76 ~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v  153 (501)
                      .-+|+.++...+..+|+.|...|..+||+|..+..-+  ..-+...+|+.++|++++|+.+. .-+....+++..++.+|
T Consensus       108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI  186 (438)
T COG1541         108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI  186 (438)
T ss_pred             eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence            4689999999999999999999999999998877722  22267899999999999999883 44556678899999999


Q ss_pred             EEcCCChhhhhhcCccC-----CCCccEEEEecCCCh
Q 010774          154 FVQENKIPSILSCLPRC-----CLYLKTIVSFANVSS  185 (501)
Q Consensus       154 l~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~  185 (501)
                      .+....+..+.+.+.+.     ...++.++..+....
T Consensus       187 ~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~s  223 (438)
T COG1541         187 AATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWS  223 (438)
T ss_pred             EEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCC
Confidence            99987765554444333     245566666544433

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=92.29  E-value=1.2  Score=46.43  Aligned_cols=98  Identities=17%  Similarity=0.176  Sum_probs=49.6

Q ss_pred             hhhcCcEEEec-chHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHH-------HH
Q 010774          309 QELKPTMFSGV-PRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR-------EA  380 (501)
Q Consensus       309 ~~~~~t~~~~~-P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~  380 (501)
                      ++.+++.+.+. |+++..+.+.+++.          ..+.+.+++-+.+..+    .++|...+ .++...       +.
T Consensus       200 ~~~~l~~i~~~~p~~l~~~~~~le~~----------~~~l~~dI~~G~~~~~----~p~p~rA~-~L~~~~~~~~~~~~~  264 (528)
T PF03321_consen  200 QDRDLRMISGWFPSFLLLLFRLLEKH----------WEELVEDIRDGTLSLL----RPNPERAA-ELRAEFEKGRGIPKR  264 (528)
T ss_dssp             CGGGEEEEEEEEHHHHHHHHHHHHHH----------HHHHHHHHHHTS--C-----S--HHHHH-HHHHHHCCSTTHHHH
T ss_pred             cccCcCEEEeeCHHHHHHHHHHHHHh----------hhHhhHHhcCCccccC----CCCHHHHH-HHHHhhcccCCCHHH
Confidence            37888887764 55666666655443          3444555554444411    11111111 111100       01


Q ss_pred             hCCceeEEEEecCCCCHHHHHHHHHhhC-CC-eeeeecccccC
Q 010774          381 FGGRLQAMLSGAAPLPIHVEEFLRVTSG-AP-LTQGYGLTESC  421 (501)
Q Consensus       381 ~~~~lr~~~~gG~~~~~~~~~~~~~~~~-~~-l~~~yG~tE~~  421 (501)
                      +=++|+.+.+.+..-.....+.+++.+| +. +...|++||+-
T Consensus       265 lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~  307 (528)
T PF03321_consen  265 LWPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGF  307 (528)
T ss_dssp             HSTT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEE
T ss_pred             hCCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceE
Confidence            1158997777777766777788888774 33 55789999953

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=86.72  E-value=40  Score=35.50  Aligned_cols=30  Identities=27%  Similarity=0.433  Sum_probs=24.8

Q ss_pred             CCCeEEEEecCCCCC-CCceEEeecHHHHHH
Q 010774          219 KTNISTIMYTSGTTG-EPKGVVLTNQAIVAE  248 (501)
Q Consensus       219 ~~~~~~i~~TSGtTG-~PK~v~~sh~~l~~~  248 (501)
                      +..+.+..-|||||| .+|-+.+|+..+-..
T Consensus        88 ~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~  118 (606)
T PLN02247         88 AQPITELLTSSGTSGGQPKLMPSTAEELDRK  118 (606)
T ss_pred             CCCcceeeccCCCCCCceeEeeccHHHHHHH
Confidence            566778999999995 899999999876443

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=86.04  E-value=5.5  Score=40.53  Aligned_cols=82  Identities=18%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh--HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 010774           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE--WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA  153 (501)
Q Consensus        76 ~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v  153 (501)
                      ..+|.+++...+...++.+...|+.+||++.++.+.+..  ....++++..+|+.+++...   ......+++..++..+
T Consensus       104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l  180 (445)
T TIGR03335       104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI  180 (445)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence            467999999999899998888999999999998876542  33456788999998887653   2345677888999988


Q ss_pred             EEcCCCh
Q 010774          154 FVQENKI  160 (501)
Q Consensus       154 l~~~~~~  160 (501)
                      +.....+
T Consensus       181 ~~~ps~l  187 (445)
T TIGR03335       181 VASVFKL  187 (445)
T ss_pred             EECHHHH
Confidence            7755443

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=84.86  E-value=10  Score=39.75  Aligned_cols=30  Identities=27%  Similarity=0.294  Sum_probs=24.9

Q ss_pred             CCCCeEEEEecCCCCC-CCceEEeecHHHHH
Q 010774          218 KKTNISTIMYTSGTTG-EPKGVVLTNQAIVA  247 (501)
Q Consensus       218 ~~~~~~~i~~TSGtTG-~PK~v~~sh~~l~~  247 (501)
                      .+..+.+..-|||||| .+|-+.+|+..+-.
T Consensus        99 ~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~  129 (612)
T PLN02620         99 CSKPISEFLTSSGTSGGERKLMPTIEEELGR  129 (612)
T ss_pred             CCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence            3566678899999997 59999999997665

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=84.16  E-value=5.8  Score=40.03  Aligned_cols=88  Identities=16%  Similarity=0.095  Sum_probs=67.4

Q ss_pred             EeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch--hHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEE
Q 010774           77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP--EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF  154 (501)
Q Consensus        77 ~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl  154 (501)
                      .+|..++......+++.+...|+++||++........  .....++++..+|+.++++++.. .+.+...|+..++.+++
T Consensus        94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~  172 (422)
T TIGR02155        94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM  172 (422)
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence            5678888777777888888889999999887665432  22334677889999999987754 57788899999999999


Q ss_pred             EcCCChhhhhh
Q 010774          155 VQENKIPSILS  165 (501)
Q Consensus       155 ~~~~~~~~~~~  165 (501)
                      .....+..+.+
T Consensus       173 ~~Ps~l~~L~~  183 (422)
T TIGR02155       173 VTPSYMLNLLE  183 (422)
T ss_pred             EcHHHHHHHHH
Confidence            88876655433

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	501
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		1e-16
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		6e-15
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		6e-15
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		3e-14
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-13
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		8e-13
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		9e-13
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-12
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		5e-11
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-10
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		2e-10
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-10
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		2e-10
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-10
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		3e-09
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		9e-09
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		1e-08
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-08
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-08
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-07
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		3e-05
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		5e-05
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		1e-04
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		1e-04
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		1e-04
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		1e-04
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		1e-04
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-04
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		1e-04
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		1e-04
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		1e-04

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 137/343 (39%), Gaps = 82/343 (23%)
Query: 182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPK----------------------KK 219
           N  S  K+ A  L  S  S    L L   D ELPP                         
Sbjct: 99  NPKSGDKELAHILSDSAPS----LVLAPPDAELPPALGALERVDVDVRARGAVPEDGADD 154
Query: 220 TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279
            + + ++YTSGTTG PKG V+  +A+   + ++   +  TG     ED     LPL H++
Sbjct: 155 GDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG-----EDVLVQGLPLFHVH 209
Query: 280 DQIIET-HCIHKGCSIGFWRGDVRYLMEDI-QELK--PTMFSGVPRVYDRIYTGISNKIS 335
             ++     + +G S+   R   R+  E   +EL    TM  GVP +Y RI    +  + 
Sbjct: 210 GLVLGILGPLRRGGSV---RHLGRFSTEGAARELNDGATMLFGVPTMYHRI----AETLP 262
Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
           +   L+K L                                     G RL  ++SG+A L
Sbjct: 263 ADPELAKALA------------------------------------GARL--LVSGSAAL 284
Query: 396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 455
           P+H  E +   +G  + + YG+TE+        AD     GTVGVP+  VE RL      
Sbjct: 285 PVHDHERIAAATGRRVIERYGMTETLMNTSVR-ADGEPRAGTVGVPLPGVELRLVEEDGT 343
Query: 456 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
              AL     GEI +RG  LF+ Y  RPD T      DG+F T
Sbjct: 344 PIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRT 386

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 177/472 (37%), Gaps = 96/472 (20%)
Query: 46  WQFFCDSAKRIPNNQMLGGRK--VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
           W F   +A        L GRK  VS    G     TY EVY  A R    +R+ GV  GD
Sbjct: 21  WDFLERAAA-------LFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 73
Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSI 163
           R    G N    + A  A              L    + +I+NHAE  +     N +P +
Sbjct: 74  RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133
Query: 164 LSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIS 223
            +        LKT+  F  +     +          ++EE L        +P +    ++
Sbjct: 134 EAIRGE----LKTVQHFVVMDEKAPE-------GYLAYEEALGEEADPVRVPERAACGMA 182
Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283
              YT+GTTG PKGVV +++A+V   L+     +V G   SE+D     +P+ H+    +
Sbjct: 183 ---YTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVLPVVPMFHVNAWCL 236
Query: 284 ETHCIHKGCS--IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341
                  G    +   R D   L+E       T  +GVP V    +  +++ + S G   
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTV----WLALADYLESTG--- 289
Query: 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEE 401
                    ++L  +++ +    AAP   SL+          R + M             
Sbjct: 290 ---------HRLKTLRRLVVGGSAAP--RSLI---------ARFERM------------- 316
Query: 402 FLRVTSGAPLTQGYGLTES--------CSGCFTSLA--DVFNMIGTVGVPMTTVEARLES 451
                 G  + QGYGLTE+              SL+  +   +    G+P+  V  RL  
Sbjct: 317 ------GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV--RLRV 368
Query: 452 VPEMGYDALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
             E G      VP+     GE+ L+G  +  GYY   + T   +  DG+F T
Sbjct: 369 ADEEG----RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 416

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 171/436 (39%), Gaps = 88/436 (20%)
Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA--ITYVPLYDTL 136
           TY +V   A R  S +   G+  GD   ++  + PE+++A    + +   IT    + T 
Sbjct: 51  TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
              A      HA+ S A +           + + C Y K +  FA  S  +    +    
Sbjct: 111 AELA-----KHAKASRAKL----------LITQACYYEK-VKDFARESDVKVMCVDSAPD 154
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
            C  + E  Q    +         ++  + Y+SGTTG PKGV+LT++ ++    SV Q  
Sbjct: 155 GCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLIT---SVAQQ- 210
Query: 257 VVTGK----VCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFW-RGDVRYLMEDIQE 310
            V G         ED     LP+ HIY       C +  G  I    + ++  L+  I++
Sbjct: 211 -VDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEK 269
Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            K ++   VP V   I                                       +P LD
Sbjct: 270 YKVSIAPVVPPVMMSI-------------------------------------AKSPDLD 292
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTES---CSGCFT 426
               S +R         + SG APL   +E+ +R     A L QGYG+TE+    + C  
Sbjct: 293 KHDLSSLR--------MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLA 344
Query: 427 SLADVFNMI-GTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKR 482
              + F++  G  G  +   E ++   PE G    +S+PR   GEIC+RG+ +  GY   
Sbjct: 345 FAKEPFDIKPGACGTVVRNAEMKIVD-PETG----ASLPRNQPGEICIRGDQIMKGYLND 399
Query: 483 PDLTEEVI-VDGWFHT 497
           P+ T   I  +GW HT
Sbjct: 400 PEATSRTIDKEGWLHT 415

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 171/440 (38%), Gaps = 88/440 (20%)
Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           TY +V+  + +  +     GVN  D   +   NCPE++++  A + +  T         A
Sbjct: 90  TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT---------A 140
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN-----VSSSQKKEAEE 193
            A       AE++      N    I         Y+  I    N     +      E+  
Sbjct: 141 TAANPFFTPAEIAKQAKASNTKLIITEAR-----YVDKIKPLQNDDGVVIVCIDDNESVP 195
Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKT---NISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
           +   C  + E  Q  T   E+    +    ++  + Y+SGTTG PKGV+LT++ +V    
Sbjct: 196 IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT--- 252
Query: 251 SVDQMFVVTGK----VCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFW-RGDVRYL 304
           SV Q   V G+        +D     LP+ HIY       C +  G +I    + ++  L
Sbjct: 253 SVAQQ--VDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLL 310
Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
           +E IQ  K T+   VP                                            
Sbjct: 311 LELIQRCKVTVAPMVP-------------------------------------------- 326
Query: 365 AAPLLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTESCS 422
             P++ ++  S   E +    ++ + SGAAPL   +E+ +      A L QGYG+TE+  
Sbjct: 327 --PIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP 384
Query: 423 GCFTSLA---DVFNM-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG 478
               SL    + F +  G  G  +   E ++   P+ G D+LS    GEIC+RG+ +  G
Sbjct: 385 VLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKG 442
Query: 479 YYKRPDLTEEVI-VDGWFHT 497
           Y   P  T E I  DGW HT
Sbjct: 443 YLNNPAATAETIDKDGWLHT 462

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 168/450 (37%), Gaps = 106/450 (23%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D 
Sbjct: 54  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDC 113
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +N ++ ++ FV +  +  IL+   +  +  K I+  +              
Sbjct: 114 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 162
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
                ++ F  + T +   LPP             +   I+ IM +SG+TG PKGV L +
Sbjct: 163 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 243 QAIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
           +A+        D +F   G   + +    S +P  H +        +  G  +   +R +
Sbjct: 218 RALAVRFSHARDPIF---GNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFE 274
Query: 301 VRYLMEDIQELK-------PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353
               +  +Q+ K       PT+FS + +                                
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFLAK-------------------------------- 302
Query: 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LT 412
                       + L+D    S + E        + SG APL   V E +      P + 
Sbjct: 303 ------------STLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIR 342
Query: 413 QGYGLTESCSGCF-TSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEI 468
           QGYGLTE+ S    T   D  +  G VG  +   EA+   L++   +G +      RGE+
Sbjct: 343 QGYGLTETTSAILITPKGD--DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGEL 395
Query: 469 CLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
            +RG  + SGY   P+ T  +I  DGW H+
Sbjct: 396 SVRGPMIMSGYVNNPEATNALIDKDGWLHS 425

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 168/443 (37%), Gaps = 92/443 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D 
Sbjct: 49  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 108
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +N ++ ++ FV +  +  IL+   +  +  K I+  +              
Sbjct: 109 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 157
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
                ++ F  + T +   LPP             +   I+ IM +SG+TG PKGV L +
Sbjct: 158 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 243 Q-AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
           + A V    + D +F   G     +    S +P  H +        +  G  +   +R +
Sbjct: 213 RTACVRFSHARDPIF---GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 269
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
               +  +Q+ K                     I S   L   LF F             
Sbjct: 270 EELFLRSLQDYK---------------------IQSA-LLVPTLFSFF------------ 295
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTE 419
                + L+D    S + E        + SG APL   V E +      P + QGYGLTE
Sbjct: 296 ---AKSTLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Query: 420 SCSGCF-TSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTL 475
           + S    T   D  +  G VG  +   EA+   L++   +G +      RGE+C+RG  +
Sbjct: 345 TTSAILITPEGD--DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMI 397
Query: 476 FSGYYKRPDLTEEVI-VDGWFHT 497
            SGY   P+ T  +I  DGW H+
Sbjct: 398 MSGYVNNPEATNALIDKDGWLHS 420

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 98/442 (22%), Positives = 168/442 (38%), Gaps = 90/442 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D 
Sbjct: 54  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 113
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +N ++ ++ FV +  +  IL+   +  +  K I+  +              
Sbjct: 114 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 162
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
                ++ F  + T +   LPP             +   I+ IM +SG+TG PKGV L +
Sbjct: 163 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 243 Q-AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
           + A V    + D +F   G     +    S +P  H +        +  G  +   +R +
Sbjct: 218 RTACVRFSHARDPIF---GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 274
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
               +  +Q+ K                     I S   L   LF F             
Sbjct: 275 EELFLRSLQDYK---------------------IQSA-LLVPTLFSFF------------ 300
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTE 419
                + L+D    S + E        + SG APL   V E +      P + QGYGLTE
Sbjct: 301 ---AKSTLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 349
Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLF 476
           + S    +  +  +  G VG  +   EA+   L++   +G +      RGE+C+RG  + 
Sbjct: 350 TTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIM 403
Query: 477 SGYYKRPDLTEEVI-VDGWFHT 497
           SGY   P+ T  +I  DGW H+
Sbjct: 404 SGYVNNPEATNALIDKDGWLHS 425

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 168/443 (37%), Gaps = 92/443 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D 
Sbjct: 49  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 108
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +N ++ ++ FV +  +  IL+   +  +  K I+  +              
Sbjct: 109 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 157
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
                ++ F  + T +   LPP             +   I+ IM +SG+TG PKGV L +
Sbjct: 158 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 243 Q-AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
           + A V    + D +F   G     +    S +P  H +        +  G  +   +R +
Sbjct: 213 RTACVRFSHARDPIF---GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 269
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
               +  +Q+ K                     I S   L   LF F             
Sbjct: 270 EELFLRSLQDYK---------------------IQSA-LLVPTLFSFF------------ 295
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTE 419
                + L+D    S + E        + SG APL   V E +      P + QGYGLTE
Sbjct: 296 ---AKSTLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Query: 420 SCSGCF-TSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTL 475
           + S    T   D  +  G VG  +   EA+   L++   +G +      RGE+C+RG  +
Sbjct: 345 TTSAILITPEGD--DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMI 397
Query: 476 FSGYYKRPDLTEEVI-VDGWFHT 497
            SGY   P+ T  +I  DGW H+
Sbjct: 398 MSGYVNNPEATNALIDKDGWLHS 420

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 87/426 (20%), Positives = 160/426 (37%), Gaps = 80/426 (18%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE           P I+ C P     +  I +    +           ++
Sbjct: 89  LHELDYFITDAE-----------PKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             +        T+D     +   +++ I+YTSGTTG  KG  L++  + +  L++   + 
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHC--IHKGCSIGFWRGDVRYLMEDIQELKPTM 315
            T      +D     LP+ H +   + ++     +G  I   + D   +++     + T+
Sbjct: 193 FT-----PDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATV 245
Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
             GVP  Y R+                                             L   
Sbjct: 246 LXGVPTFYTRL---------------------------------------------LQSP 260
Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI 435
           ++ +   G  +  +SG+APL           +G  + + YG TE+     ++  D   + 
Sbjct: 261 RLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNT-SNPYDGDRVP 319
Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEIC---LRGNTLFSGYYKRPDLTE-EVIV 491
           G VG  +  V AR+   PE G      +PRG+I    ++G  +F GY++ P+ T+ E   
Sbjct: 320 GAVGPALPGVSARVTD-PETG----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRD 374
Query: 492 DGWFHT 497
           DG+F T
Sbjct: 375 DGFFIT 380

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 168/438 (38%), Gaps = 82/438 (18%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V  +Y E  + +   G A+++ G+    R  +   NC E+ I + A     +   P  + 
Sbjct: 51  VDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +  ++ +I F  +  +  +++ + +    +KTIV   +       + +  G
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGLDKVIT-VQKTVTTIKTIVILDS-------KVDYRG 162
Query: 196 VSCFSWEEFLQLGTLDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             C   + F++  T     PP             +K  ++ IM +SG+TG PKGV LT++
Sbjct: 163 YQCL--DTFIKRNT-----PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHE 215
Query: 244 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW-RGDV 301
            IV       D ++   G   S      + +P  H +        +  G  +    + D 
Sbjct: 216 NIVTRFSHARDPIY---GNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDE 272
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
              ++ +Q+ K T    VP ++      I NK            E    Y L N      
Sbjct: 273 ETFLKTLQDYKCTSVILVPTLF-----AILNK-----------SELLNKYDLSN------ 310
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTES 420
                                  L  + SG APL   V E +      P + QGYGLTE+
Sbjct: 311 -----------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347
Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
            S    +  +  +  G  G  +   +A++  +      +L    RGE+C++G  L  GY 
Sbjct: 348 TSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYV 404
Query: 481 KRPDLTEEVI-VDGWFHT 497
             P+ T+E+I  +GW HT
Sbjct: 405 NNPEATKELIDEEGWLHT 422

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 158/433 (36%), Gaps = 91/433 (21%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY ++   A R    + + G+  GDR  +   N  E+              VP+   
Sbjct: 28  VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 87
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK----EA 191
           L A  V FI++ +   +        P ++  +        T+  +    S  ++     A
Sbjct: 88  LAAPEVSFILSDSGSKVVIYGAPSAP-VIDAIRAQADPPGTVTDWIGADSLAERLRSAAA 146
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
           +E  V C   +                      IMYTSGTTG PKGVV T++++ +   S
Sbjct: 147 DEPAVECGGDDNLF-------------------IMYTSGTTGHPKGVVHTHESVHSAASS 187
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
                 V  +     D     LP+ H+           +G ++                +
Sbjct: 188 WASTIDVRYR-----DRLLLPLPMFHVAALTTVIFSAMRGVTL----------------I 226
Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
               F    +V+  I   +  ++  GGA+   L          N  + +P+      LD+
Sbjct: 227 SMPQFDAT-KVWSLI---VEERVCIGGAVPAIL----------NFMRQVPEFAE---LDA 269
Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL--TQGYGLTESCSGCFTSLA 429
             F           +  ++G AP+P   E  +++ +   +   QGY LTESC G    L+
Sbjct: 270 PDF-----------RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLS 315
Query: 430 -DVFNMIGTVG--VPMTTVEARLES--VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
            D     G+ G     T V  R +   + E G         GE+ ++ + L   Y+ RP+
Sbjct: 316 EDALRKAGSAGRATMFTDVAVRGDDGVIREHG--------EGEVVIKSDILLKEYWNRPE 367
Query: 485 LTEEVIVDGWFHT 497
            T +   +GWF T
Sbjct: 368 ATRDAFDNGWFRT 380

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 168/438 (38%), Gaps = 82/438 (18%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V  +Y E  + +   G A+++ G+    R  +   NC E+ I + A     +   P  + 
Sbjct: 51  VDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +  ++ +I F  +  +  +++ + +    +KTIV   +       + +  G
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGLDKVIT-VQKTVTTIKTIVILDS-------KVDYRG 162
Query: 196 VSCFSWEEFLQLGTLDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             C   + F++  T     PP             +K  ++ IM +SG+TG PKGV LT++
Sbjct: 163 YQCL--DTFIKRNT-----PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHE 215
Query: 244 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW-RGDV 301
            IV       D ++   G   S      + +P  H +        +  G  +    + D 
Sbjct: 216 NIVTRFSHARDPIY---GNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDE 272
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
              ++ +Q+ K T    VP ++      I NK            E    Y L N      
Sbjct: 273 ETFLKTLQDYKCTSVILVPTLF-----AILNK-----------SELLNKYDLSN------ 310
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTES 420
                                  L  + SG APL   V E +      P + QGYGLTE+
Sbjct: 311 -----------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347
Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
            S    +  +  +  G  G  +   +A++  +      +L    RGE+C++G  L  GY 
Sbjct: 348 TSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYV 404
Query: 481 KRPDLTEEVI-VDGWFHT 497
             P+ T+E+I  +GW HT
Sbjct: 405 NNPEATKELIDEEGWLHT 422

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 158/433 (36%), Gaps = 91/433 (21%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY ++   A R    + + G+  GDR  +   N  E+              VP+   
Sbjct: 42  VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 101
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK----EA 191
           L A  V FI++ +   +        P ++  +        T+  +    S  ++     A
Sbjct: 102 LAAPEVSFILSDSGSKVVIYGAPSAP-VIDAIRAQADPPGTVTDWIGADSLAERLRSAAA 160
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
           +E  V C   +                      IMYTSGTTG PKGVV T++++ +   S
Sbjct: 161 DEPAVECGGDDNLF-------------------IMYTSGTTGHPKGVVHTHESVHSAASS 201
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
                 V  +     D     LP+ H+           +G ++                +
Sbjct: 202 WASTIDVRYR-----DRLLLPLPMFHVAALTTVIFSAMRGVTL----------------I 240
Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
               F    +V+  I   +  ++  GGA+   L          N  + +P+      LD+
Sbjct: 241 SMPQFDAT-KVWSLI---VEERVCIGGAVPAIL----------NFMRQVPEFAE---LDA 283
Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL--TQGYGLTESCSGCFTSLA 429
             F           +  ++G AP+P   E  +++ +   +   QGY LTESC G    L+
Sbjct: 284 PDF-----------RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLS 329
Query: 430 -DVFNMIGTVG--VPMTTVEARLES--VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
            D     G+ G     T V  R +   + E G         GE+ ++ + L   Y+ RP+
Sbjct: 330 EDALRKAGSAGRATMFTDVAVRGDDGVIREHG--------EGEVVIKSDILLKEYWNRPE 381
Query: 485 LTEEVIVDGWFHT 497
            T +   +GWF T
Sbjct: 382 ATRDAFDNGWFRT 394

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 168/438 (38%), Gaps = 82/438 (18%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V  +Y E  + +   G A+++ G+    R  +   NC E+ I + A     +   P  + 
Sbjct: 51  VDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +  ++ +I F  +  +  +++ + +    +KTIV   +       + +  G
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGLDKVIT-VQKTVTTIKTIVILDS-------KVDYRG 162
Query: 196 VSCFSWEEFLQLGTLDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             C   + F++  T     PP             +K  ++ IM +SG+TG PKGV LT++
Sbjct: 163 YQCL--DTFIKRNT-----PPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHE 215
Query: 244 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW-RGDV 301
            IV       D ++   G   S      + +P  H +        +  G  +    + D 
Sbjct: 216 NIVTRFSHARDPIY---GNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDE 272
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
              ++ +Q+ K T    VP ++      I NK            E    Y L N      
Sbjct: 273 ETFLKTLQDYKCTNVILVPTLF-----AILNK-----------SELLNKYDLSN------ 310
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTES 420
                                  L  + SG APL   V E +      P + QGYGLTE+
Sbjct: 311 -----------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347
Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
            S    +  +  +  G  G  +   +A++  +      +L    RGE+C++G  L  GY 
Sbjct: 348 TSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYV 404
Query: 481 KRPDLTEEVI-VDGWFHT 497
             P+ T+E+I  +GW HT
Sbjct: 405 NNPEATKELIDEEGWLHT 422

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 164/433 (37%), Gaps = 71/433 (16%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ A R    M+  G+       +   N  ++ + +       +   P  D 
Sbjct: 83  VNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDI 142
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   ++ ++ +I F  +  +  IL    +  +  K ++    + S +    ++  
Sbjct: 143 YNERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVI----LDSREDYMGKQ-- 196
Query: 196 VSCFSW-EEFLQLGTLDCELPPK---KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
            S +S+ E  L  G  + +  P    ++T  + IM +SG+TG PKGV LT++ I      
Sbjct: 197 -SMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSH 255
Query: 252 V-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQ 309
             D +F   G     +    + +P  H +        +  G  I   +R +    +  +Q
Sbjct: 256 CRDPVF---GNQIIPDTAILTVIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQ 312
Query: 310 ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369
           + K                     I S   L   LF F                  + L+
Sbjct: 313 DYK---------------------IQSA-LLVPTLFSFF---------------AKSTLV 335
Query: 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSL 428
           D    S + E        + SG APL   V E +      P + QGYGLTE+ S    + 
Sbjct: 336 DKYDLSNLHE--------IASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITP 387
Query: 429 ADVFNMIGTVG--VPMTTVE-ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 485
               +  G  G  VP  + +   L++   +G +      RGE+C++G  +  GY   P+ 
Sbjct: 388 RGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQ-----RGELCVKGPMIMKGYVNNPEA 442
Query: 486 TEEVI-VDGWFHT 497
           T  +I  DGW H+
Sbjct: 443 TSALIDKDGWLHS 455

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 163/431 (37%), Gaps = 90/431 (20%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE           P I+ C P     +  I +    +           ++
Sbjct: 89  LHELDYFITDAE-----------PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             +        T+D     +   +++ I+YTSGTTG   G +L++  + +  L++   + 
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL- 311
            T      +D     LP+ H       TH +    ++  F RG + +L     + I +L 
Sbjct: 193 FT-----PDDVLIHALPIYH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLM 240
Query: 312 -KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            + T+  GVP  Y R+                                            
Sbjct: 241 ARATVLMGVPTFYTRL-------------------------------------------- 256
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
            L   ++     G ++  +SG+APL           +G  + + YG+TE+     ++  D
Sbjct: 257 -LQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYD 314
Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT- 486
              + G VG  +  V AR+   PE G +    +PRG+I +    G  +F GY++ P+ T 
Sbjct: 315 GDRVPGAVGPALPGVSARVTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 487 EEVIVDGWFHT 497
            E   DG+F T
Sbjct: 370 SEFRDDGFFIT 380

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 163/431 (37%), Gaps = 90/431 (20%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE           P I+ C P     +  I +    +           ++
Sbjct: 89  LHELDYFITDAE-----------PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             +        T+D     +   +++ I+YTSGTTG   G +L++  + +  L++   + 
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL- 311
            T      +D     LP+ H       TH +    ++  F RG + +L     + I +L 
Sbjct: 193 FT-----PDDVLIHALPIYH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLM 240
Query: 312 -KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            + T+  GVP  Y R+                                            
Sbjct: 241 ARATVLMGVPTFYTRL-------------------------------------------- 256
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
            L   ++     G ++  +SG+APL           +G  + + YG+TE+     ++  D
Sbjct: 257 -LQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYD 314
Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT- 486
              + G VG  +  V AR+   PE G +    +PRG+I +    G  +F GY++ P+ T 
Sbjct: 315 GDRVPGAVGPALPGVSARVTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 487 EEVIVDGWFHT 497
            E   DG+F T
Sbjct: 370 SEFRDDGFFIT 380

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 163/431 (37%), Gaps = 90/431 (20%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE           P I+ C P     +  I +    +           ++
Sbjct: 89  LHELDYFITDAE-----------PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             +        T+D     +   +++ I+YTSGTTG   G +L++  + +  L++   + 
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL- 311
            T      +D     LP+ H       TH +    ++  F RG + +L     + I +L 
Sbjct: 193 FT-----PDDVLIHALPIYH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLM 240
Query: 312 -KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            + T+  GVP  Y R+                                            
Sbjct: 241 ARATVLMGVPTFYTRL-------------------------------------------- 256
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
            L   ++     G ++  +SG+APL           +G  + + YG+TE+     ++  D
Sbjct: 257 -LQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYD 314
Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT- 486
              + G VG  +  V AR+   PE G +    +PRG+I +    G  +F GY++ P+ T 
Sbjct: 315 GDRVPGAVGPALPGVSARVTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 487 EEVIVDGWFHT 497
            E   DG+F T
Sbjct: 370 SEFRDDGFFIT 380

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 172/436 (39%), Gaps = 87/436 (19%)
Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
            + E+ +   +  S +  +GV  G+  G+   N  +++  + A    A T VP+     +
Sbjct: 54  NFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKS 113
Query: 139 NAVEFIINHAEVSIAFVQ----ENKIPSILSC-LPRCCLYLKTIVSFANVSSSQKKEAEE 193
             +E I+N +E +   V     EN  P +    + R  +    + S + V  S  ++ E 
Sbjct: 114 FELEHILNDSEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFEN 173
Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
           + V+                     + +++ I YT GTTG PKGV LT+  + A  L   
Sbjct: 174 VKVN--------------------PEEDVALIPYTGGTTGXPKGVXLTHFNLAANAL--- 210
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCS-IGFWRGDVRYLMEDIQELK 312
           Q+ V TG   S  DT     P  H  +  +    +  G   +     +   L E+I++ K
Sbjct: 211 QLAVATG--LSHXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYK 268
Query: 313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372
            T    VP   + +   + +        S K ++++Y                       
Sbjct: 269 GTFSWAVPPALNVLVNTLES--------SNKTYDWSY----------------------- 297
Query: 373 VFSKIREAFGGRLQAMLSGAAPL-PIHVEEFLRVTS---GAPL---TQGYGLTESCSGCF 425
                       L+   +GA P+ P  VE+ L++ +     P     Q +G TE+C    
Sbjct: 298 ------------LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT 345
Query: 426 TSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 485
           T+     +   T GVP + +E ++ S+ E G + L     GEI +RG  +F GY+KR   
Sbjct: 346 TNPPLRLDKSTTQGVPXSDIELKVISL-EDGRE-LGVGESGEIVIRGPNIFKGYWKREKE 403
Query: 486 TEEVIVDGWFHTEVHR 501
            +E     W++ E  R
Sbjct: 404 NQEC----WWYDEKGR 415

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/431 (21%), Positives = 153/431 (35%), Gaps = 90/431 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V LT+++    A R  S +   GV+ GDR  I   NC E I  + A        +P+   
Sbjct: 30  VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYR 89
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
           L A+ + F++     S+     +    +   LP          S   V     K+A  +G
Sbjct: 90  LNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP----------SLGGV-----KKAYAIG 134
Query: 196 VSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
                +  F  L +      P     +   I++T+   G P+G +++   ++     + Q
Sbjct: 135 DGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLL-----IAQ 189
Query: 255 MFVVTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKP 313
             +V     +E D     LPL H+    ++ T     G S+   + D      DI+  K 
Sbjct: 190 SSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKV 249
Query: 314 TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV 373
           T+ +                            EFA    LGN+      ++AAP      
Sbjct: 250 TVMA----------------------------EFA--PMLGNI-----LDQAAPAQ---- 270
Query: 374 FSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN 433
            + +R   G             P  +E F      A     +G +E+     ++ A   +
Sbjct: 271 LASLRAVTG----------LDTPETIERFEATCPNATFWATFGQSETSG--LSTFAPYRD 318
Query: 434 MIGTVGVPM-----TTVEARLESVP--EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT 486
              + G P+       V+A    +P  E+G          EI LRG T+F GY+     T
Sbjct: 319 RPKSAGRPLFWRTVAVVDAEDRPLPPGEVG----------EIVLRGPTVFKGYWNNAAAT 368
Query: 487 EEVIVDGWFHT 497
           +    +GW HT
Sbjct: 369 QHAFRNGWHHT 379

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 26/203 (12%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L YQ +   A      + S  +  GDR  +      E++ A  AC    +  VPL    G
Sbjct: 49  LEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXG 108
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
               +                K+  +L SC P   +     +   N ++    +  EL V
Sbjct: 109 VGQRD------------SWSAKLQGLLASCQPAAIITGDEWLPLVNAAT---HDNPELHV 153
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQ 254
              +W  F  L   D  L      +I+ + YTSG+T  P+GV++T++ + A +  +S D 
Sbjct: 154 LSHAW--FKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDG 211
Query: 255 MFVVTGKVCSEEDTYFSFLPLAH 277
           + +  G  C       S+LP  H
Sbjct: 212 IKLRPGDRC------VSWLPFYH 228

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 116/299 (38%), Gaps = 42/299 (14%)
Query: 40  AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV 99
           A +E+P   F  +A     N+   G+       G     TY E+ + A RF SA+R+ GV
Sbjct: 14  ATVEAPPALFNFAAYLFRLNETRAGKTAYIDDTGS---TTYGELEERARRFASALRTLGV 70
Query: 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEV-----SIAF 154
           +P +R  +   +     +A        +  V     L      +++ H+       S A 
Sbjct: 71  HPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGAL 130
Query: 155 VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCEL 214
           VQ N   ++ S     C   + IVS       Q +E+E      F  EE +       + 
Sbjct: 131 VQ-NVTQALESAEHDGC---QLIVS-------QPRESEPRLAPLF--EELIDAAAPAAKA 177
Query: 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
                 +I+  +Y+SG+TG+PKG V T+    A +    +++       +E D  FS   
Sbjct: 178 AATGCDDIAFWLYSSGSTGKPKGTVHTH----ANLYWTAELYAKPILGIAENDVVFSAAK 233
Query: 275 LAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED----------IQELKPTMFSGVPRVY 323
           L   Y        +  G +     G    LM +          + E +PT+F GVP +Y
Sbjct: 234 LFFAYG-------LGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGCIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGAS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 118/279 (42%), Gaps = 65/279 (23%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT-YFSFLPLAHIY 279
           +I++IM+TSGTTG  K V  T +   A  +   +       +  + DT + S LP+ HI 
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE------SLGFDRDTNWLSVLPIYHIS 217
Query: 280 DQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
              +    + +G ++                          R+ D+              
Sbjct: 218 GLSVLLRAVIEGFTV--------------------------RIVDKFN------------ 239
Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
            ++++     N ++ ++   +PQ      L+ L+   + E +   LQ +L G A L   +
Sbjct: 240 -AEQILTMIKNERITHISL-VPQT-----LNWLMQQGLHEPYN--LQKILLGGAKLSATM 290
Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYD 458
            E   +    P+   +G+TE+CS   T+  ++ +    TVG+P   V+ ++++  + G+ 
Sbjct: 291 IE-TALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH- 348
Query: 459 ALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
                  GE+ ++G  + +GY    DLT     +G+F+T
Sbjct: 349 -------GELMIKGANVMNGYLYPTDLT-GTFENGYFNT 379

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 47/202 (23%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+Y+E+ + A R    ++  G   G    +Y     E +I +         Y+P+   L 
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL--- 194
                              E++I  +L+     CL               K++A EL   
Sbjct: 550 -------------------EDRISYMLADSAAACLL---------THQEMKEQAAELPYT 581
Query: 195 GVSCF-----SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV 249
           G + F      +EE  Q       + P    + + IMYTSGTTG+PKG + T+  I   V
Sbjct: 582 GTTLFIDDQTRFEE--QASDPATAIDP---NDPAYIMYTSGTTGKPKGNITTHANIQGLV 636
Query: 250 LSVDQMFVVTGKVCSEEDTYFS 271
             VD M        S++DT+ S
Sbjct: 637 KHVDYM------AFSDQDTFLS 652

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	501
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-68
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-65
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-65
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-63
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-63
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	6e-63
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-62
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-61
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	1e-59
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-57
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-57
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	2e-57
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-49
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-47
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	5e-47
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	6e-34
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-30
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	3e-25
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	2e-24
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	6e-23
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	8e-18
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	9e-05
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-11
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	3e-08
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-07
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	5e-04
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-07
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-07
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-06
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	7e-07
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	9e-07
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-06
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-05
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-04
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  227 bits (580), Expect = 2e-68
 Identities = 82/424 (19%), Positives = 135/424 (31%), Gaps = 77/424 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY ++   A R    + + G+  GDR  +   N  E+              VP+   L 
Sbjct: 44  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  V FI++ +   +        P I +   +      T+  +                 
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADP-PGTVTDWIGAD------------- 149

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             S  E L+    D         +   IMYTSGTTG PKGVV T++++ +   S      
Sbjct: 150 --SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMF 316
           V        D     LP+ H+           +G ++      D   +   I E +  + 
Sbjct: 208 VR-----YRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIG 262

Query: 317 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSK 376
             VP + + +                                        P    L    
Sbjct: 263 GAVPAILNFMR-------------------------------------QVPEFAELDAPD 285

Query: 377 IREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMI 435
            R          ++G AP+P  + +         + QGY LTESC G       D     
Sbjct: 286 FR--------YFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKA 336

Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVPR--GEICLRGNTLFSGYYKRPDLTEEVIVDG 493
           G+ G      +  +    + G           GE+ ++ + L   Y+ RP+ T +   +G
Sbjct: 337 GSAGRATMFTDVAV--RGDDGVI----REHGEGEVVIKSDILLKEYWNRPEATRDAFDNG 390

Query: 494 WFHT 497
           WF T
Sbjct: 391 WFRT 394

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  218 bits (559), Expect = 2e-65
 Identities = 86/428 (20%), Positives = 158/428 (36%), Gaps = 84/428 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE  I     +K   I +   +    ++T+                    
Sbjct: 89  LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG-------------- 134

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             S  +     +       +   +++ I+YTSGTTG  KG +L++  + +  L++   + 
Sbjct: 135 --SLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR 192

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
            T      +D     LP+ H +   + ++  +    S+ F    D   +++ +   + T+
Sbjct: 193 FT-----PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATV 245

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
             GVP  Y R+                                       +P L      
Sbjct: 246 LMGVPTFYTRLL-------------------------------------QSPRLTKETTG 268

Query: 376 KIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434
            +R          +SG+APL      E+   T G  + + YG+TE+             +
Sbjct: 269 HMR--------LFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPYDGD-RV 318

Query: 435 IGTVGVPMTTVEARLESV-PEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVI 490
            G VG  +  V AR+    PE G +    +PR   G I ++G  +F GY++ P+ T+   
Sbjct: 319 PGAVGPALPGVSARV--TDPETGKE----LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEF 372

Query: 491 V-DGWFHT 497
             DG+F T
Sbjct: 373 RDDGFFIT 380

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  218 bits (559), Expect = 2e-65
 Identities = 77/426 (18%), Positives = 131/426 (30%), Gaps = 84/426 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LT+++    A R  S +   GV+ GDR  I   NC E I  + A        +P+   L 
Sbjct: 32  LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A+ + F++     S+     +    +   LP     +K   +  + S             
Sbjct: 92  ADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG-VKKAYAIGDGSG------------ 138

Query: 198 CFSWEEFLQL-GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
              +  F  L        P     +   I++T+   G P+G +++   ++    S+   +
Sbjct: 139 --PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW 196

Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
            +T     E D     LPL H+    +       G +       D      DI+  K T+
Sbjct: 197 RLT-----EADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTV 251

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
            +    +   I                                                +
Sbjct: 252 MAEFAPMLGNI---------------------------------------LDQAAPAQLA 272

Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNM 434
            +R        A+     P    +E F      A     +G +E+     F    D    
Sbjct: 273 SLR--------AVTGLDTPET--IERFEATCPNATFWATFGQSETSGLSTFAPYRDR--- 319

Query: 435 IGTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV 491
             + G P+      +  V          +P    GEI LRG T+F GY+     T+    
Sbjct: 320 PKSAGRPLFWRTVAV--VDAEDRP----LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR 373

Query: 492 DGWFHT 497
           +GW HT
Sbjct: 374 NGWHHT 379

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  215 bits (549), Expect = 1e-63
 Identities = 86/476 (18%), Positives = 164/476 (34%), Gaps = 101/476 (21%)

Query: 46  WQFFCDSAKRIPNN----QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP 101
                 +A++                   +      + + E+ +   +  S +  +GV  
Sbjct: 22  ADRIDAAAEKFGEKTAIISAEPKFPSEFPES-----MNFLEICEVTKKLASGISRKGVRK 76

Query: 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
           G+  G+   N  ++++ + A    A T VP+     +  +E I+N +E +   V      
Sbjct: 77  GEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYE 136

Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPP-KKKT 220
           +    L +    ++ +                +G    S  E +  G+ D E      + 
Sbjct: 137 NFKPVLEKTG--VERVFV--------------VGGEVNSLSEVMDSGSEDFENVKVNPEE 180

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           +++ I YT GTTG PKGV+LT+  + A  L +     ++       DT    +P+ H  +
Sbjct: 181 DVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSH-----MDTIVGCMPMFHSAE 235

Query: 281 QIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336
             +    +  G        F   +   L E+I++ K T    VP   +            
Sbjct: 236 FGLVNLMVTVGNEYVVMGMF---NQEMLAENIEKYKGTFSWAVPPALN------------ 280

Query: 337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 396
              L                      N       +  +S ++           +GA P+ 
Sbjct: 281 --VLV---------------------NTLESSNKTYDWSYLK--------VFATGAWPVA 309

Query: 397 IHVEE-FLRVT------SGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL 449
             + E  L++             Q +G+TE+C    T+     +   T GVPM+ +E ++
Sbjct: 310 PALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKV 369

Query: 450 ESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV-----DGWFHT 497
                +  +    +     GEI +RG  +F GY+KR    +E          +F T
Sbjct: 370 -----ISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRT 420

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  213 bits (545), Expect = 2e-63
 Identities = 74/456 (16%), Positives = 145/456 (31%), Gaps = 86/456 (18%)

Query: 47  QFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR 104
            +    A++  ++  +  G               TYQ +Y  A      +         R
Sbjct: 5   FWLYKQAQQNGHHIAITDGQES-----------YTYQNLYCEASLLAKRL---KAYQQSR 50

Query: 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL 164
            G+Y  N  + II + AC    I    +   L  N +   +   +V + F          
Sbjct: 51  VGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGF 110

Query: 165 SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIST 224
             +    +           ++        +     +     +    +         +I++
Sbjct: 111 QIVSLDDI---EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIAS 167

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           IM+TSGTTG  K V  T +   A  +   +           +  + S LP+ HI    + 
Sbjct: 168 IMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFD-----RDTNWLSVLPIYHISGLSVL 222

Query: 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
              + +G ++      +   ++  I+  + T  S VP+  + +                 
Sbjct: 223 LRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLM---------------- 266

Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEF 402
                                   L +              LQ +L G A L   + E  
Sbjct: 267 ---------------------QQGLHEPY-----------NLQKILLGGAKLSATMIETA 294

Query: 403 LRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALS 461
           L+     P+   +G+TE+CS     +   +     TVG+P   V+ ++++ P        
Sbjct: 295 LQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKN-PNKE----- 346

Query: 462 SVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
               GE+ ++G  + +GY    D       +G+F+T
Sbjct: 347 --GHGELMIKGANVMNGYLYPTD-LTGTFENGYFNT 379

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  213 bits (545), Expect = 6e-63
 Identities = 88/468 (18%), Positives = 160/468 (34%), Gaps = 87/468 (18%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
                   +R      +       G        +Y E  + +   G A+++ G+    R 
Sbjct: 26  GTQLRKYMERYAKLGAIAFTNAVTGVD-----YSYAEYLEKSCCLGKALQNYGLVVDGRI 80

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
            +   NC E+ I + A     +   P  +      +   +  ++ +I F  +  +  +++
Sbjct: 81  ALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVIT 140

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC-------ELPPKK 218
                      ++  + V                  + F++  T           +   +
Sbjct: 141 VQKTVTTIKTIVILDSKVDYR----------GYQCLDTFIKRNTPPGFQASSFKTVEVDR 190

Query: 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
           K  ++ IM +SG+TG PKGV LT++ IV             G   S      + +P  H 
Sbjct: 191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVSPGTAVLTVVPFHHG 248

Query: 279 YDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 334
           +        +  G  +     F   D    ++ +Q+ K T    VP ++           
Sbjct: 249 FGMFTTLGYLICGFRVVMLTKF---DEETFLKTLQDYKCTSVILVPTLFA---------- 295

Query: 335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP 394
                L+K                       + LL+    S +          + SG AP
Sbjct: 296 ----ILNK-----------------------SELLNKYDLSNLV--------EIASGGAP 320

Query: 395 LPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR---LE 450
           L   V E   R  +   + QGYGLTE+ S    +        G  G  +   +A+   L+
Sbjct: 321 LSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDK-PGASGKVVPLFKAKVIDLD 379

Query: 451 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
           +   +G +      RGE+C++G  L  GY   P+ T+E+I  +GW HT
Sbjct: 380 TKKSLGPNR-----RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHT 422

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  212 bits (541), Expect = 2e-62
 Identities = 90/466 (19%), Positives = 156/466 (33%), Gaps = 89/466 (19%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
             +  ++     +   L     ++G V      TY +V   A R  S +   G+  GD  
Sbjct: 25  HSYVLENLSNHSSKPCL--INGANGDV-----YTYADVELTARRVASGLNKIGIQQGDVI 77

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
            ++  + PE+++A    + +               +      +   +   Q      +  
Sbjct: 78  MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
                 + +  + S  +               C  + E  Q    +         ++  +
Sbjct: 138 FARESDVKVMCVDSAPD--------------GCLHFSELTQADENEAPQVDISPDDVVAL 183

Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
            Y+SGTTG PKGV+LT++ ++  V                ED     LP+ HIY      
Sbjct: 184 PYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYF-HSEDVILCVLPMFHIYALNSIM 242

Query: 286 HC-IHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340
            C +  G  I     F   ++  L+  I++ K ++   VP V                ++
Sbjct: 243 LCGLRVGAPILIMPKF---EIGSLLGLIEKYKVSIAPVVPPVMM--------------SI 285

Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV- 399
           +K                       +P LD    S +R         + SG APL   + 
Sbjct: 286 AK-----------------------SPDLDKHDLSSLR--------MIKSGGAPLGKELE 314

Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM----IGTVGVPMTTVEARL---ESV 452
           +        A L QGYG+TE+       LA          G  G  +   E ++   E+ 
Sbjct: 315 DTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETG 374

Query: 453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
             +  +       GEIC+RG+ +  GY   P+ T   I  +GW HT
Sbjct: 375 ASLPRNQ-----PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHT 415

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  209 bits (534), Expect = 2e-61
 Identities = 87/436 (19%), Positives = 157/436 (36%), Gaps = 82/436 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D   
Sbjct: 51  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +   +N ++ ++ FV +  +  IL+   +  +  K I+           +++     
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIM----------DSKTDYQG 160

Query: 198 CFSWEEFLQ----LGTLDCELPPKK---KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
             S   F+      G  + +  P+       I+ IM +SG+TG PKGV L ++       
Sbjct: 161 FQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFS 220

Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLME 306
                  + G     +    S +P  H +        +  G  +     F   +    + 
Sbjct: 221 HARD--PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRF---EEELFLR 275

Query: 307 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA 366
            +Q+ K      VP ++                 +K                       +
Sbjct: 276 SLQDYKIQSALLVPTLFS--------------FFAK-----------------------S 298

Query: 367 PLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCF 425
            L+D    S +          + SG APL   V E   +      + QGYGLTE+ S   
Sbjct: 299 TLIDKYDLSNLH--------EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 350

Query: 426 TSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR 482
            +        G VG  +   EA+   L++   +G +      RGE+C+RG  + SGY   
Sbjct: 351 ITPEGDDK-PGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNN 404

Query: 483 PDLTEEVIV-DGWFHT 497
           P+ T  +I  DGW H+
Sbjct: 405 PEATNALIDKDGWLHS 420

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  203 bits (520), Expect = 1e-59
 Identities = 69/426 (16%), Positives = 127/426 (29%), Gaps = 78/426 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LT+ E+        + + + G+ P  R  +   N  + +IA+ A +        L   L 
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           +  +  +I   E++ A +       +   + +     + I                  + 
Sbjct: 90  SAELAELIKRGEMTAAVIAVG--RQVADAIFQSGSGARIIF-----------------LG 130

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
               +          E P ++    + I YTSGTTG PK  ++  +A  + VL +     
Sbjct: 131 DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV- 189

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
             G      +     +PL H+          +    +            ++ +Q+ + T 
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
               P   D                                           L  +   +
Sbjct: 248 LFATPTHLDA------------------------------------------LAAAAAHA 265

Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI 435
                    L+ +    A +P  V E +           YG TE+ +  +          
Sbjct: 266 GSSLKLD-SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT---- 320

Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRG-NTLFSGYYKRPDLTEEVIV 491
           GT   P    E R+  V   G      V     GE+ +   ++ F GY  +P  T E + 
Sbjct: 321 GTEMAPGFFSEVRI--VRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377

Query: 492 DGWFHT 497
           DGW+ T
Sbjct: 378 DGWYRT 383

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  198 bits (507), Expect = 1e-57
 Identities = 84/462 (18%), Positives = 141/462 (30%), Gaps = 89/462 (19%)

Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
            +     +            + D         TY E+ + A RF SA+R+ GV+P +R  
Sbjct: 27  AYLFRLNETRAGKTAY----IDDTGS-----TTYGELEERARRFASALRTLGVHPEERIL 77

Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
           +   +     +A        +  V     L      +++ H+           + ++   
Sbjct: 78  LVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQA 137

Query: 167 LPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
           L        + IVS         +  E        +EE +       +       +I+  
Sbjct: 138 LESAEHDGCQLIVS---------QPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFW 188

Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC---SEEDTYFSFLPLAHIYDQI 282
           +Y+SG+TG+PKG V T+  +            +  K     +E D  FS   L   Y   
Sbjct: 189 LYSSGSTGKPKGTVHTHANLYW-------TAELYAKPILGIAENDVVFSAAKLFFAYGLG 241

Query: 283 IETH-CIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
                 +  G +            +   + E +PT+F GVP       T           
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVP-------T----------- 283

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
                    Y   L            +P L +     IR           S    LP  +
Sbjct: 284 --------LYANML-----------VSPNLPARADVAIRIC--------TSAGEALPREI 316

Query: 400 -EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD 458
            E F     G  +  G G TE     F S        GT G P+   E  L    E G+ 
Sbjct: 317 GERFTAHF-GCEILDGIGSTE-MLHIFLSNRAGAVEYGTTGRPVPGYEIEL--RDEAGHA 372

Query: 459 ALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
               VP    G++ ++G +    Y+   + +    +  W  +
Sbjct: 373 ----VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRS 410

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  198 bits (505), Expect = 1e-57
 Identities = 88/425 (20%), Positives = 146/425 (34%), Gaps = 92/425 (21%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+  AA        +  +    R  ++ +   E  +A+ A     +  VPL    G
Sbjct: 49  LTYAELAAAAGAT-----AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSG 103

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +  I++ +  S+                                           + 
Sbjct: 104 DKELAHILSDSAPSLVLAPP-------------------------------DAELPPALG 132

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
                +                 + + ++YTSGTTG PKG V+  +A+   + ++   + 
Sbjct: 133 ALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
            T      ED     LPL H++  ++     + +G S+             ++ +   TM
Sbjct: 193 WT-----GEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATM 246

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
             GVP +Y R                                          + ++L   
Sbjct: 247 LFGVPTMYHR------------------------------------------IAETLPAD 264

Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI 435
                     + ++SG+A LP+H  E +   +G  + + YG+TE+     +  AD     
Sbjct: 265 PELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNT-SVRADGEPRA 323

Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVP--RGEICLRGNTLFSGYYKRPDLTEEVIV-D 492
           GTVGVP+  VE RL  V E G    +      GEI +RG  LF+ Y  RPD T      D
Sbjct: 324 GTVGVPLPGVELRL--VEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTED 381

Query: 493 GWFHT 497
           G+F T
Sbjct: 382 GFFRT 386

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  204 bits (521), Expect = 2e-57
 Identities = 100/469 (21%), Positives = 161/469 (34%), Gaps = 87/469 (18%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
             +   +         L      +G  G     TY +V+  + +  +     GVN  D  
Sbjct: 64  HDYIFQNISEFATKPCL-----INGPTGHV--YTYSDVHVISRQIAANFHKLGVNQNDVV 116

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
            +   NCPE++++  A + +  T            +      +   +   +   +  I  
Sbjct: 117 MLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKP 176

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN---I 222
                 + +  I    +V   +          C  + E  Q  T   E+    + +   +
Sbjct: 177 LQNDDGVVIVCIDDNESVPIPE---------GCLRFTELTQSTTEASEVIDSVEISPDDV 227

Query: 223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282
             + Y+SGTTG PKGV+LT++ +V  V                +D     LP+ HIY   
Sbjct: 228 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF-HSDDVILCVLPMFHIYALN 286

Query: 283 IETHC-IHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 337
               C +  G +I     F   ++  L+E IQ  K T+   VP +               
Sbjct: 287 SIMLCGLRVGAAILIMPKF---EINLLLELIQRCKVTVAPMVPPIVL------------- 330

Query: 338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI 397
            A++K                       +   +    S IR         + SGAAPL  
Sbjct: 331 -AIAK-----------------------SSETEKYDLSSIR--------VVKSGAAPLGK 358

Query: 398 HV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLA----DVFNMIGTVGVPMTTVEARLESV 452
            + +        A L QGYG+TE+      SL           G  G  +   E ++   
Sbjct: 359 ELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD- 417

Query: 453 PEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
           P+ G     S+     GEIC+RG+ +  GY   P  T E I  DGW HT
Sbjct: 418 PDTG----DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  178 bits (455), Expect = 1e-49
 Identities = 66/433 (15%), Positives = 123/433 (28%), Gaps = 81/433 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+Y+E+  AA     ++R +G+ PG+   +   N  E  I   A     +  V    +  
Sbjct: 51  LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110

Query: 138 ANAVEFIINHAEVSIAFVQENKIPS----ILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193
            + +    +  E ++               L+        ++ +                
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLN------------ 158

Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                 + ++ +     D    P     ++    + GTTG PK +  T+      V    
Sbjct: 159 -DSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSV 217

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH--CIHKGCSIGFWRG-DVRYLMEDIQE 310
           ++   T     ++  Y   +P AH Y             G ++              I++
Sbjct: 218 EICQFT-----QQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEK 272

Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            +  + + VP                                                  
Sbjct: 273 HQVNVTALVPPAVSLWL-----------------------------------QALIEGES 297

Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
               +         L+ +  G A L   +   +    G  L Q +G+ E     +T L D
Sbjct: 298 RAQLA--------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE-GLVNYTRLDD 348

Query: 431 VFNMI-GTVGVPMT-TVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDL 485
               I  T G PM    E  +      G      +P+   G +  RG   F GYYK P  
Sbjct: 349 SAEKIIHTQGYPMCPDDEVWV--ADAEGNP----LPQGEVGRLMTRGPYTFRGYYKSPQH 402

Query: 486 TEEVI-VDGWFHT 497
                  +G++ +
Sbjct: 403 NASAFDANGFYCS 415

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  171 bits (436), Expect = 2e-47
 Identities = 79/474 (16%), Positives = 143/474 (30%), Gaps = 112/474 (23%)

Query: 46  WQFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
                D A +  +   +  G               +Y+E+   A R  +  +  G+   D
Sbjct: 28  GDLLRDRAAKYGDRIAITCGNTH-----------WSYRELDTRADRLAAGFQKLGIQQKD 76

Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---- 159
           R  +   N  E+   + A        V    +  ++ + +    AE +   + +      
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 160 ----IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 215
                  + S LP     LK I+           EAEE       +     L T   +LP
Sbjct: 137 YRSLARQVQSKLP----TLKNIIVAG--------EAEE-------FLPLEDLHTEPVKLP 177

Query: 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275
             K ++++ +  + G+TG  K +  T+   +  +    ++  +          Y + LP+
Sbjct: 178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLD-----HSTVYLAALPM 232

Query: 276 AHIYDQIIETH--CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
           AH Y          ++ G  +                 I+  K T+ + VP +       
Sbjct: 233 AHNYPLSSPGVLGVLYAGGRVVLSPSP---SPDDAFPLIEREKVTITALVPPLAMVWM-- 287

Query: 330 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 389
                                               A        S ++         + 
Sbjct: 288 -----------------------------------DAASSRRDDLSSLQ--------VLQ 304

Query: 390 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMT-TVEA 447
            G A         ++   G  L Q +G+ E     +T L D   +I  T G PM+   E+
Sbjct: 305 VGGAKFSAEAARRVKAVFGCTLQQVFGMAE-GLVNYTRLDDPEEIIVNTQGKPMSPYDES 363

Query: 448 RLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
           R+    +   D    V     G +  RG     GYYK  +        DG++ T
Sbjct: 364 RV--WDDHDRD----VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  170 bits (433), Expect = 5e-47
 Identities = 63/436 (14%), Positives = 119/436 (27%), Gaps = 87/436 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+Y E+   +    + +  +G+  GD   +   N  E+ I   A     +  +    +  
Sbjct: 56  LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHR 115

Query: 138 ANAVEFIINHAEVSIAFVQEN----KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193
              +   I   +  +               +  L    L  + I+             + 
Sbjct: 116 QYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILML---------NHQA 166

Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                  W E         +        ++    + G+TG PK +  T+      V +  
Sbjct: 167 TDFGLLDWIE--TPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASA 224

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH--CIHKGCSI----GFWRGDVRYLMED 307
           ++  +              LP  H +          +H G  +         +       
Sbjct: 225 EICGLN-----SNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNP---EPLNCFSI 276

Query: 308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
           IQ  +  M S VP                                               
Sbjct: 277 IQRHQVNMASLVPSAVIMWL-------------------------------------EKA 299

Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427
                    ++         +  G A  P  +   +       L Q +G+ E     +T 
Sbjct: 300 AQYKDQIQSLK--------LLQVGGASFPESLARQVPEVLNCKLQQVFGMAE-GLVNYTR 350

Query: 428 LADVFNMI-GTVGVPMT-TVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKR 482
           L D    I  T G P++   E ++  V E   +    VP    G +  RG   F GYY+ 
Sbjct: 351 LDDSDEQIFTTQGRPISSDDEIKI--VDEQYRE----VPEGEIGMLATRGPYTFCGYYQS 404

Query: 483 PDLTEEVI-VDGWFHT 497
           P+   +V   D ++++
Sbjct: 405 PEHNSQVFDEDNYYYS 420

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  133 bits (337), Expect = 6e-34
 Identities = 103/476 (21%), Positives = 156/476 (32%), Gaps = 141/476 (29%)

Query: 67  VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126
           VS    G     TY EVY  A R    +R+ GV  GDR    G N       +EA     
Sbjct: 37  VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR---HLEA----- 88

Query: 127 ITY--VPLYDTLGA-----------NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY 173
             Y  VP    +GA             + +I+NHAE  +     N +P + +        
Sbjct: 89  --YFAVPG---MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKT 142

Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTG 233
           ++  V             E+      ++EE L        +P   +     + YT+GTTG
Sbjct: 143 VQHFVVM----------DEKAPEGYLAYEEALGEEADPVRVP---ERAACGMAYTTGTTG 189

Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCS 293
            PKGVV +++A+V   L+   +        SE+D     +P+ H               +
Sbjct: 190 LPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVVPMFH--------------VN 232

Query: 294 ------IGFWRG----------DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 337
                      G          D   L+E       T  +GVP V+              
Sbjct: 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW-------------- 278

Query: 338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI 397
                                         L D L             + ++ G+A    
Sbjct: 279 -----------------LA-----------LADYL--ESTGHRLKTLRRLVVGGSAAPRS 308

Query: 398 HVEEFLRVTSGAPLTQGYGLTESC---SGCF-------TSLADVFNMIGTVGVPMTTVEA 447
            +  F R+  G  + QGYGLTE+       F        S  +   +    G+P+  V  
Sbjct: 309 LIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRL 366

Query: 448 RLESVPEMGYDALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
           R+    E G      VP+     GE+ L+G  +  GYY   + T   +  DG+F T
Sbjct: 367 RV--ADEEGRP----VPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 416

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  123 bits (311), Expect = 2e-30
 Identities = 58/435 (13%), Positives = 136/435 (31%), Gaps = 86/435 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
             ++E+ + + +  + +    G+  GDR  +     PEW + +  C    + ++P    +
Sbjct: 74  WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
            +  + + +  ++       +  I  + +    C   L+  +  +          E+   
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASEC-PSLRIKLLVS----------EKSCD 182

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
              ++++ L   +             S I +TSGT+G PK    +  ++  +        
Sbjct: 183 GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWT 242

Query: 257 VVTGKVCSEEDTYFSFLPLA---HIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQE 310
            +        D  ++        +I   ++E      G           D   +++ +  
Sbjct: 243 GLQ-----ASDIMWTISDTGWILNILCSLMEP--WALGACTFVHLLPKFDPLVILKTLSS 295

Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
                  G P VY                   ++           +++ +   K      
Sbjct: 296 YPIKSMMGAPIVY-------------------RML----------LQQDLSSYK------ 320

Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
              F  ++          ++    L     E  R  +G  + + YG TE           
Sbjct: 321 ---FPHLQNC--------VTVGESLLPETLENWRAQTGLDIRESYGQTE-TGLTCMVSKT 368

Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNT-----LFSGYYKR 482
           +    G +G   +  + ++  + + G    + +P    G+I +R        +FSGY   
Sbjct: 369 MKIKPGYMGTAASCYDVQI--IDDKG----NVLPPGTEGDIGIRVKPIRPIGIFSGYVDN 422

Query: 483 PDLTEEVIVDGWFHT 497
           PD T   I   ++  
Sbjct: 423 PDKTAANIRGDFWLL 437

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  104 bits (262), Expect = 2e-24
 Identities = 71/499 (14%), Positives = 135/499 (27%), Gaps = 122/499 (24%)

Query: 53  AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC 112
           A+  P++             G  + LT+ ++Y   +     +   G   GDR  I     
Sbjct: 34  ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92

Query: 113 PEWIIAMEACNSQAITYVPLYDTLGANAVE---FIINHAEVSIAFVQENKIPSILSCLPR 169
            E+++A           VPL    G    E    +++ +         + +  ++  + R
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR 152

Query: 170 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTS 229
                                  E   S    +               +  + + + YTS
Sbjct: 153 --------------------RPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTS 192

Query: 230 GTTGEPKGVVLTNQAIVAEVLSVDQMFVVT-GKVCSEEDTYFSFLPLAHIYDQIIETH-- 286
           G+T  P GVV+++Q +      +   +      +        S+LP  H    ++     
Sbjct: 193 GSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDM-GLVIGICA 251

Query: 287 CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRV-------YDRIYTGISNKISSGGA 339
            I  G            L        P  F   P             ++   N       
Sbjct: 252 PILGGYPA--------VLT------SPVSFLQRPARWMHLMASDFHAFSAAPN------- 290

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH- 398
                  FA+       ++    + A    D      I            SG+  +    
Sbjct: 291 -------FAFELAA---RRTTDDDMAG--RD---LGNILTIL--------SGSERVQAAT 327

Query: 399 VEEFLRVTSGAPLTQ-----GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEA-RLESV 452
           ++ F    +   L +      Y L E+      + +       TV     ++ A   +  
Sbjct: 328 IKRFADRFARFNLQERVIRPSYWLAEATVYV--ATSKPGQPPETVDFDTESLSAGHAKPC 385

Query: 453 PEMGYDALSSVPR----------------------GEICLRGNTLFSGYYKRPDLTEEVI 490
              G  +L S                         GEI + G+ + +GY+++PD +E   
Sbjct: 386 AGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTF 445

Query: 491 V------------DGWFHT 497
                          W  T
Sbjct: 446 GGKIVTPSPGTPEGPWLRT 464

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  101 bits (253), Expect = 6e-23
 Identities = 81/469 (17%), Positives = 149/469 (31%), Gaps = 118/469 (25%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY+++   A    + +++ G  PGDR  +  +     I A   C       VP+Y    
Sbjct: 41  MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILS-CLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
              ++                K   I++   P   L +   +     +       + L +
Sbjct: 101 EKLLD----------------KAQRIVTNSKPVIVLMIADHIKKF-TADELNTNPKFLKI 143

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
              + E      +   +    K  +I+ + YTSG+T  PKGV++++  ++  +  +   F
Sbjct: 144 PAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF 203

Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHC--IHKGCSIGFWRGDVRYLMEDIQELKPT 314
            +      +E   FS+LP  H    +I      I+ G            +M       P 
Sbjct: 204 HMN-----DETIIFSWLPPHHDM-GLIGCILTPIYGGIQA--------IMM------SPF 243

Query: 315 MFSGVPRV-------YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
            F   P         Y    +G  N              FAY+Y +   K+   + K   
Sbjct: 244 SFLQNPLSWLKHITKYKATISGSPN--------------FAYDYCV---KRIREEKKEG- 285

Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIH-VEEFLRVTSGAPLTQ-----GYGLTESC 421
            LD    S    AF        +GA P+    +E F +        +      YGL E+ 
Sbjct: 286 -LD---LSSWVTAF--------NGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEAT 333

Query: 422 SGCFTSLADVFNMIGTVGVPMTTVEA-RLESVPEMGYDALSSV----PR----------- 465
                +     +   T+ +     +  R+    +    +   V    P            
Sbjct: 334 LLV--TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTL 391

Query: 466 --------GEICLRGNTLFSGYYKRPDLTEEVIV---------DGWFHT 497
                   GEI ++ N++  GY+ +P+ T                +  T
Sbjct: 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRT 440

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 85.3 bits (212), Expect = 8e-18
 Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 16/176 (9%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            T++++   + +  +     G+  GD   +   +  ++   M   +      VP    L 
Sbjct: 87  FTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLK 146

Query: 138 ANAVEFIINHAEVS--IAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
              + + I  A +   +   +++    +      C      I            E     
Sbjct: 147 TRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC----GDIPLKKAKVGGDVLEGWI-- 200

Query: 196 VSCFSWEEFLQLGTLDCELP-PKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIVA 247
                + + L+  +   E P  +  T    I  + ++SGT G PK V   N   + 
Sbjct: 201 ----DFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLG 252

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 44.1 bits (105), Expect = 9e-05
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 399 VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD 458
              FL  T G  L +G+G TE+      +   +    G++G P    +  L  +   G  
Sbjct: 358 FNRFLEFT-GIKLMEGFGQTETVVTI-ATFPWMEPKPGSIGKPTPGYKIEL--MDRDG-- 411

Query: 459 ALSSVPR---GEICLRGNT-----LFSGYYKRPDLTEEVIVDGWFHT 497
                     GEI +         LF  Y K P+ TEE   DG++HT
Sbjct: 412 --RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHT 456

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 64.4 bits (158), Expect = 3e-11
 Identities = 61/443 (13%), Positives = 123/443 (27%), Gaps = 133/443 (30%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           +TY+++ + +      + S   +      +YG   PE II                Y+P+
Sbjct: 27  ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINF-----LGCVKAGHAYIPV 81

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
             ++ A+ V+ I  ++   +         + L         LK I      ++       
Sbjct: 82  DLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTP------ 135

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV 252
                             +  +          I+YTSG+TG PKGV +T   +V+     
Sbjct: 136 ----------------NPEHAVKG---DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWA 176

Query: 253 DQMFVVTGKVCSEEDTY-----FSF--------LPL---AHIYDQIIETHCIHKGCSIGF 296
            + F +          +     FSF          L     ++        +        
Sbjct: 177 VEDFNLQ-----TGQVFLNQAPFSFDLSVMDIYPSLVTGGTLW---AIDKDMIA------ 222

Query: 297 WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356
                + L   +++    +++  P                                    
Sbjct: 223 ---RPKDLFASLEQSDIQVWTSTP------------------------------------ 243

Query: 357 KKGMPQNKAAPLLDSLV-FSKIREAFGGRLQAMLSGAAPLPI-HVEEFLRVTSGAPLTQG 414
                        +  +  +   E+    ++  L     LP     + +     A +   
Sbjct: 244 ----------SFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNT 293

Query: 415 YGLTES--CSGCFTSLADVFNMIGTV--GVPM--TTV---EARLESVPEMGYDALSSVPR 465
           YG TE+           +V +   ++  G       +   +      P  G         
Sbjct: 294 YGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAP-DG------EK- 345

Query: 466 GEICLRGNTLFSGYYKRPDLTEE 488
           GEI + G ++  GY   P+LTE+
Sbjct: 346 GEIVIVGPSVSVGYLGSPELTEK 368

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 41/289 (14%), Positives = 81/289 (28%), Gaps = 40/289 (13%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           +   +  + GTTG PK VV  +  I A +      +          +T  +     HI  
Sbjct: 92  SHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGR-PSGNTLAAIPTGPHIVG 150

Query: 281 QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340
            I +   +  G        D R++   + E      + V +    +   + N + +    
Sbjct: 151 AINKERALRLGGMFFSIDIDPRWVKRSLSE---GDTATVRKYTHHLVDQVQNTLMNQDI- 206

Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV-FSKIREAFGGRLQAMLSGAAPLPIHV 399
            + L                P     P+L  L+   ++       L  +  G   L +  
Sbjct: 207 -RFLV-------------TTP-----PVLRELLKRPEVVLQMKQSLAQITLGGTELNLDE 247

Query: 400 EEFLR--VTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV-PEMG 456
            +F+   +      +  YG T +     + L    +           +   +  V     
Sbjct: 248 IKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDV--VDSITA 305

Query: 457 YDALSSVP---RGEIC---LRGNTLFSGYYKRPDLTEEVIVDGWFHTEV 499
                 V    RG +    L     +    +R        V G+    +
Sbjct: 306 QT----VEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRL 350

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 35/174 (20%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           L+Y+E+ + A R    ++  G   G    +Y     E +I +       +      Y+P+
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGI-----LGVLKAGAAYLPV 544

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
              L  + + +++  +  +     +     +            T+         ++    
Sbjct: 545 DPKLPEDRISYMLADSAAACLLTHQ----EMKEQAAELPYTGTTLFIDDQTRFEEQASD- 599

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
                                + P    + + IMYTSGTTG+PKG + T+  I 
Sbjct: 600 -----------------PATAIDPN---DPAYIMYTSGTTGKPKGNITTHANIQ 633

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 19/114 (16%)

Query: 385 LQAMLSGAAPLPI-HVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTV--G 439
           L+ +L G     + HV + LR+     L   YG TE    +     + D+ + I ++  G
Sbjct: 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHV-VHDLPDSISSLPIG 780

Query: 440 VPMTTVE-----ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE 488
            P++         + +  P  G         GE+C+ G  +  GY  R DLT+E
Sbjct: 781 KPISNASVYILNEQSQLQP-FG------AV-GELCISGMGVSKGYVNRADLTKE 826

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 49/207 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           LTY E+   A +       +G+      GI      +  I +      A+      YVP+
Sbjct: 65  LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI-----LAVLKAGGAYVPI 119

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
                   +++I++ ++  +   Q+     ++  +       +                 
Sbjct: 120 DIEYPKERIQYILDDSQARMLLTQK----HLVHLIHNIQFNGQVE--------------- 160

Query: 193 ELGVSCFSWEEFLQLGT--LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
                 F  +         L         T+++ ++YTSGTTG PKG +L ++ I    +
Sbjct: 161 -----IFEEDTIKIREGTNLHVPSKS---TDLAYVIYTSGTTGNPKGTMLEHKGISNLKV 212

Query: 251 SVDQMFVVTGKVCSEEDTY-----FSF 272
             +    VT     E+D        SF
Sbjct: 213 FFENSLNVT-----EKDRIGQFASISF 234

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 28/174 (16%), Positives = 48/174 (27%), Gaps = 41/174 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           + Y+++ D+A +    +      PG   G+YG    E I  +      AI      Y+ +
Sbjct: 53  VDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL-----LAILLSGHHYLYI 107

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
                A     +    +  +                                S+    A 
Sbjct: 108 DLKQPAAWNAELCRQVDCRLILDC----------------------------STTPTPAN 139

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
            L                           I+ I ++SGTTG PK +  T+  I 
Sbjct: 140 GLPCVPVRHLPAAPASVARPCFAA---DQIAYINFSSGTTGRPKAIACTHAGIT 190

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 27/118 (22%), Positives = 38/118 (32%), Gaps = 15/118 (12%)

Query: 379 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFT-SLADVFNMI 435
           +  GG  Q +  G      HV   L       L  GYG TE+   + C   +  D+    
Sbjct: 273 DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDD 332

Query: 436 GTVGVPM--TTV---EARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE 488
             +G  +  T V   +   + + E           GEI   G  L  GY      T  
Sbjct: 333 IPIGKAIAGTAVLLLDEHGQEIAEPD------RA-GEIVAFGAGLAQGYRNDAARTRA 383

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 51.0 bits (123), Expect = 7e-07
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 33/184 (17%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
            TY+++ + A +  + +    +  G    +           +       I     TYVP+
Sbjct: 56  WTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII-----VGIMKSGNTYVPI 109

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
              L  +   F++  +  ++AFV +N    +        L  K      N+S+       
Sbjct: 110 EAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQD----- 164

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV 252
                            +    P       + ++YTSG+TG PKGV ++   + +   + 
Sbjct: 165 --------------TSDILNNYPE---NLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAW 207

Query: 253 DQMF 256
            ++ 
Sbjct: 208 GKLI 211

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 37/174 (21%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT-----YVPL 132
            TY ++   +    + + S  +       ++G+   + +         A+T     Y+P+
Sbjct: 30  RTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATF-----VALTKSGHAYIPV 84

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
                   +  II  A+ S+    E + P  +  +    L                    
Sbjct: 85  DVHSAPERILAIIEIAKPSLIIAIE-EFPLTIEGISLVSL-------------------- 123

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
                       L     +      K  +   I++TSGTTG+PKGV +++  ++
Sbjct: 124 -----SEIESAKLAEMPYER-THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 78  LTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           +TY+E+ +   +    +  S GV  GD   +Y    PE II + A 
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAI 159

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 10/53 (18%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY-----FSF 272
           I+YTSG+TG PKGV ++   + +    +   F V+         +     FSF
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFPVS-----GGKIFLNQAPFSF 195

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 17/110 (15%)

Query: 388 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTV--GVPMT 443
           M  G        +  L     A +   YG TE+           DV +   ++  G    
Sbjct: 266 MFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKP 325

Query: 444 TVE-----ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE 488
            +         + +P  G         GEI + G ++  GY   P+LTE+
Sbjct: 326 DMNIFIMDEEGQPLP-EG------EK-GEIVIAGPSVSRGYLGEPELTEK 367

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 49/349 (14%), Positives = 93/349 (26%), Gaps = 117/349 (33%)

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           +LG      GK     W+                 S  V       I+      W+  ++
Sbjct: 158 VLGS-----GKT----WVA-----------LDVCLSYKVQCKMDFKIF------WL-NLK 190

Query: 121 ACNSQAITYVP---LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC---LPRCCLYL 174
            CNS          L   +  N      + + + +           L        C L L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 175 KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGE 234
                  NV +++            +W  F     L C      K               
Sbjct: 251 ------LNVQNAK------------AWNAF----NLSC------KI-------------- 268

Query: 235 PKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI 294
              ++ T    V + LS      +     S +    +  P     D++            
Sbjct: 269 ---LLTTRFKQVTDFLSAATTTHI-----SLDHHSMTLTP-----DEVKSL--------- 306

Query: 295 GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354
                 ++YL    Q+L   + +  PR            +S      +       N+K  
Sbjct: 307 -L----LKYLDCRPQDLPREVLTTNPRR-----------LSIIAESIRDGLATWDNWKHV 350

Query: 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 403
           N  K     +++  L+ L  ++ R+ F     ++   +A +P  +   +
Sbjct: 351 NCDKLTTIIESS--LNVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	501
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.97
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.97
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	91.32
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	90.99
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	90.7
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	90.47
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	86.95

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=4.6e-60  Score=491.38  Aligned_cols=407  Identities=21%  Similarity=0.290  Sum_probs=331.3

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCC
Q 010774           21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (501)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~  100 (501)
                      .+..++++..++..++.    ..++.++|.++++++|+++|+++.   ++.    +.+||+||.++++++|++|++.|++
T Consensus         4 ~~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~   72 (536)
T 3ni2_A            4 QEEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ   72 (536)
T ss_dssp             -CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence            44567777666544332    478999999999999999999875   322    5899999999999999999999999


Q ss_pred             CCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEe
Q 010774          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF  180 (501)
Q Consensus       101 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~  180 (501)
                      +||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+.......  .. .++.+
T Consensus        73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~  149 (536)
T 3ni2_A           73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV  149 (536)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence            9999999999999999999999999999999999999999999999999999999987766554433221  11 34444


Q ss_pred             cCCChhhHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeecc
Q 010774          181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG  260 (501)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~  260 (501)
                      +....           ....++++........+.....++++++|+|||||||.||||+++|+++++.+....... ...
T Consensus       150 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~  217 (536)
T 3ni2_A          150 DSAPD-----------GCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NPN  217 (536)
T ss_dssp             SCCCT-----------TCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SCS
T ss_pred             cCCCC-----------CccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-ccc
Confidence            33211           134566666544333334456789999999999999999999999999998876543321 111


Q ss_pred             ccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCC
Q 010774          261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (501)
Q Consensus       261 ~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (501)
                      ..+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.         
T Consensus       218 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------  288 (536)
T 3ni2_A          218 LYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKS---------  288 (536)
T ss_dssp             SCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTC---------
T ss_pred             ccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhC---------
Confidence            25778999999999999999975 7889999999999875 999999999999999999999999998752         


Q ss_pred             hhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecc
Q 010774          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGL  417 (501)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~  417 (501)
                                                  +.....++        ++||.+++||+++++++.+++++.+ ++.+++.||+
T Consensus       289 ----------------------------~~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~  332 (536)
T 3ni2_A          289 ----------------------------PDLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGM  332 (536)
T ss_dssp             ----------------------------SCGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEEC
T ss_pred             ----------------------------cccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCccccccc
Confidence                                        11222222        3899999999999999999999998 8899999999


Q ss_pred             cccCcceeccc----CCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-cc
Q 010774          418 TESCSGCFTSL----ADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD  492 (501)
Q Consensus       418 tE~~~~~~~~~----~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~d  492 (501)
                      ||++.+++...    ......++++|+|+++++++|+|.+++.+++.|  +.|||+|+|++++.|||++|+.|++.| .+
T Consensus       333 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~  410 (536)
T 3ni2_A          333 TEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTIDKE  410 (536)
T ss_dssp             GGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTT
T ss_pred             cccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCC--CccEEEEeCcccchhhcCChhHHHhhccCC
Confidence            99997765432    122345689999999999999994457767665  999999999999999999999999999 79


Q ss_pred             CcccCCCC
Q 010774          493 GWFHTEVH  500 (501)
Q Consensus       493 gw~~TGD~  500 (501)
                      |||+|||.
T Consensus       411 g~~~TGDl  418 (536)
T 3ni2_A          411 GWLHTGDI  418 (536)
T ss_dssp             SCEEEEEE
T ss_pred             CceEcccE
Confidence            99999995

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=3.4e-59  Score=486.25  Aligned_cols=395  Identities=22%  Similarity=0.279  Sum_probs=331.4

Q ss_pred             CCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCC--CCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh
Q 010774           37 ESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGK--VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE  114 (501)
Q Consensus        37 ~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~--~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~  114 (501)
                      ..+....++.++|.++++++|+++|+++.   +..  .+..+++||+||.++++++|++|.+.|+++||+|+|+++|+++
T Consensus        13 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~   89 (549)
T 3g7s_A           13 SLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID   89 (549)
T ss_dssp             CCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH
T ss_pred             CCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Confidence            34455689999999999999999999987   421  2334689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhc
Q 010774          115 WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (501)
Q Consensus       115 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  194 (501)
                      +++++|||+++|++++|++|.++.+++.++++.++++++|++......+.......  ....++..+..           
T Consensus        90 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----------  156 (549)
T 3g7s_A           90 YVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE-----------  156 (549)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS-----------
T ss_pred             HHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC-----------
Confidence            99999999999999999999999999999999999999999988776654443322  24455555432           


Q ss_pred             CceEeeHHHHHhcCCCCCCCCCCCC-CCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEec
Q 010774          195 GVSCFSWEEFLQLGTLDCELPPKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL  273 (501)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~  273 (501)
                         ...+.++..............+ +++++|+|||||||.||||+++|.++.+.+..+...+     ++..+|++++.+
T Consensus       157 ---~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~  228 (549)
T 3g7s_A          157 ---VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIVGCM  228 (549)
T ss_dssp             ---SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEECCS
T ss_pred             ---CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEEEeC
Confidence               2345666655432222333333 8999999999999999999999999999998877666     788999999999


Q ss_pred             ChHHHHHHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 010774          274 PLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (501)
Q Consensus       274 pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (501)
                      |++|.+++..++.++..|+++++.+. ++..+++.++++++|+++++|++++.+++........                
T Consensus       229 p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------------  292 (549)
T 3g7s_A          229 PMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT----------------  292 (549)
T ss_dssp             CTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC----------------
T ss_pred             cHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc----------------
Confidence            99999998888889999999998875 9999999999999999999999999998754322100                


Q ss_pred             hhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHh----hC---CCeeeeecccccCccee
Q 010774          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----SG---APLTQGYGLTESCSGCF  425 (501)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~----~~---~~l~~~yG~tE~~~~~~  425 (501)
                                         +++        +++|.+++||+++++++.+++.+.    ++   +.+++.||+||++.+++
T Consensus       293 -------------------~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  345 (549)
T 3g7s_A          293 -------------------YDW--------SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVT  345 (549)
T ss_dssp             -------------------CCC--------TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEE
T ss_pred             -------------------CCc--------cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhh
Confidence                               011        389999999999999999999987    56   88999999999998887


Q ss_pred             cccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh---ccC--cccCCCC
Q 010774          426 TSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI---VDG--WFHTEVH  500 (501)
Q Consensus       426 ~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~---~dg--w~~TGD~  500 (501)
                      ..........+++|+|+++++++|+|.+++++++.|  +.|||+|+|++++.|||++|+.|++.|   .+|  ||+|||.
T Consensus       346 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl  423 (549)
T 3g7s_A          346 TNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDV  423 (549)
T ss_dssp             ECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEE
T ss_pred             cCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcE
Confidence            766555456689999999999999996777777766  999999999999999999999999988   678  9999995

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=9.5e-59  Score=481.82  Aligned_cols=389  Identities=23%  Similarity=0.306  Sum_probs=320.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ...++.++|.++++.+|+++|+++.   ++  +..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|
T Consensus        16 ~~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   90 (541)
T 1v25_A           16 EELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF   90 (541)
T ss_dssp             CCCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            3468999999999999999999864   22  123689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEee
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (501)
                      ||+++|++++|++|.++.+++.++|+.++++++|++.+....+..... ....+..++.++....          .....
T Consensus        91 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~  159 (541)
T 1v25_A           91 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAP----------EGYLA  159 (541)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCC----------TTCEE
T ss_pred             HHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHh-hCCCccEEEEecCCCC----------ccccc
Confidence            999999999999999999999999999999999999876655433322 2234555666554321          01234


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhc--ceeeeeccccCCCCcEEEEecChHHH
Q 010774          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV--DQMFVVTGKVCSEEDTYFSFLPLAHI  278 (501)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (501)
                      +++++.....   .....++++++|+|||||||.||||++||++++......  ...+     .+..+|++++.+|++|.
T Consensus       160 ~~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~  231 (541)
T 1v25_A          160 YEEALGEEAD---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV  231 (541)
T ss_dssp             HHHHCCSCCC---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred             HHHHhhccCC---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence            5555433211   133457899999999999999999999999998776542  2223     67889999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010774          279 YDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (501)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (501)
                      +++..++.+++.|+++++.+.  ++..+++.++++++|+++++|++++.+++.......                     
T Consensus       232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------  290 (541)
T 1v25_A          232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH---------------------  290 (541)
T ss_dssp             HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC---------------------
T ss_pred             hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC---------------------
Confidence            998777889999999999863  999999999999999999999999999875432210                     


Q ss_pred             ccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC-----
Q 010774          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-----  431 (501)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~-----  431 (501)
                                      ++        ++||.+++||+++++++.++| +.+|+++++.||+||++.+++......     
T Consensus       291 ----------------~l--------~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  345 (541)
T 1v25_A          291 ----------------RL--------KTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL  345 (541)
T ss_dssp             ----------------CC--------SSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred             ----------------cc--------hhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceeccccccccccc
Confidence                            01        389999999999999999999 667999999999999998776553321     


Q ss_pred             -----CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          432 -----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       432 -----~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                           ....+++|+|+|+++++|+| +++++++.+.+++|||+|+||+++.|||++|+.|++.| .||||+|||.
T Consensus       346 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl  419 (541)
T 1v25_A          346 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDI  419 (541)
T ss_dssp             CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEE
T ss_pred             CccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCE
Confidence                 12347899999999999999 88988876545799999999999999999999999999 5999999995

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=4.2e-59  Score=485.68  Aligned_cols=398  Identities=22%  Similarity=0.333  Sum_probs=320.4

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHH
Q 010774           39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (501)
Q Consensus        39 ~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~  118 (501)
                      +....|+.++|.++++++|+++|++...  ++..+  +.+||+||.++++++|++|+++|+++||+|+|+++|+++++++
T Consensus        16 ~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~   91 (550)
T 3rix_A           16 PLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMP   91 (550)
T ss_dssp             CCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHH
T ss_pred             CcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHH
Confidence            3455899999999999999999986320  11111  5899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceE
Q 010774          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (501)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  198 (501)
                      +|||+++|++++|++|.++.+++.++++.++++++|++.+....+..... ....+..++.++.....         ...
T Consensus        92 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~  161 (550)
T 3rix_A           92 VLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDY---------QGF  161 (550)
T ss_dssp             HHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCB---------TTB
T ss_pred             HHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCccc---------cCc
Confidence            99999999999999999999999999999999999999887766544332 22445666666543211         123


Q ss_pred             eeHHHHHhcCCC------CC-CCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEE
Q 010774          199 FSWEEFLQLGTL------DC-ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS  271 (501)
Q Consensus       199 ~~~~~~~~~~~~------~~-~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~  271 (501)
                      ..+.+++.....      .. +.....++++++|+|||||||.||||+++|+++...+......+  ....+..+|++++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~~l~  239 (550)
T 3rix_A          162 QSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTAILS  239 (550)
T ss_dssp             CBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCEEEE
T ss_pred             ccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcEEEE
Confidence            455555543311      11 11222357899999999999999999999999998877654431  0125778999999


Q ss_pred             ecChHHHHHHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 010774          272 FLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (501)
Q Consensus       272 ~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (501)
                      .+|++|.+++..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.                     
T Consensus       240 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------------  298 (550)
T 3rix_A          240 VVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS---------------------  298 (550)
T ss_dssp             CSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC---------------------
T ss_pred             echHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC---------------------
Confidence            9999999999888889999999999875 999999999999999999999999998762                     


Q ss_pred             HHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCC-eeeeecccccCcceecccC
Q 010774          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSLA  429 (501)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~-l~~~yG~tE~~~~~~~~~~  429 (501)
                                      ......++        ++||.+++||+++++++.+++.+.++.. +++.||+||++++++....
T Consensus       299 ----------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~  354 (550)
T 3rix_A          299 ----------------TLIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE  354 (550)
T ss_dssp             ----------------CGGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT
T ss_pred             ----------------ccccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCC
Confidence                            22222223        3899999999999999999999999875 9999999999988776655


Q ss_pred             CCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          430 DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       430 ~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      .. ...+++|+|+|+++++|+|.+++.+++.|  +.|||||+|++++.|||++|+.|++.| .+|||+|||.
T Consensus       355 ~~-~~~~~vG~~~~~~~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl  423 (550)
T 3rix_A          355 GD-DKPGAVGKVVPFFEAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDI  423 (550)
T ss_dssp             TC-CCTTEEEEECTTCEEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEE
T ss_pred             CC-CCCCCcccccCCcEEEEEeCCCCcCCCCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcE
Confidence            43 44589999999999999995556666655  999999999999999999999999999 8999999995

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=8.3e-59  Score=482.60  Aligned_cols=385  Identities=15%  Similarity=0.169  Sum_probs=320.5

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..|+.++|.++++++|+++|+++.    +     +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   99 (544)
T 3o83_A           29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA   99 (544)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999999999999874    3     6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChh----hhhhcCccCCCCccEEEEecCCChhhHHHhhhcCce
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (501)
                      |+++|++++|+++.++.+++.++++.++++++|++.....    ...............++.+.....            
T Consensus       100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  167 (544)
T 3o83_A          100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------  167 (544)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred             HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence            9999999999999999999999999999999999986541    111222222234445555543321            


Q ss_pred             EeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChH
Q 010774          198 CFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (501)
Q Consensus       198 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (501)
                      ...+.++..... .........++++++|+|||||||.||||+++|+++.+.+......+     ++..+|++++.+|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  242 (544)
T 3o83_A          168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP  242 (544)
T ss_dssp             SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence            123444444332 22222445678999999999999999999999999999998877766     788999999999999


Q ss_pred             HHHHHHH--HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010774          277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (501)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (501)
                      |.+++..  ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..                       
T Consensus       243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-----------------------  299 (544)
T 3o83_A          243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKA-----------------------  299 (544)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHH-----------------------
T ss_pred             eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhch-----------------------
Confidence            9999874  7889999999999875 9999999999999999999999999988632                       


Q ss_pred             hhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCc
Q 010774          354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN  433 (501)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~  433 (501)
                                    .....++        ++||.+++||+++++++.+++.+.+++.+++.||+||++..++........
T Consensus       300 --------------~~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  357 (544)
T 3o83_A          300 --------------AQYKDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ  357 (544)
T ss_dssp             --------------TTTHHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             --------------hhccccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence                          1122333        389999999999999999999999999999999999988655443333233


Q ss_pred             ccCcccccc-cCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          434 MIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       434 ~~~s~G~p~-p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      ..+++|+|+ ++++++|+| +++++++.|  ++|||+|+|++++.|||++|+.|++.| .+|||+|||.
T Consensus       358 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl  423 (544)
T 3o83_A          358 IFTTQGRPISSDDEIKIVD-EQYREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDL  423 (544)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEE
T ss_pred             ccCCCceecCCCcEEEEEC-CCCCCCCCC--CeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCE
Confidence            457899996 899999999 999888776  999999999999999999999999999 7999999995

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1.7e-58  Score=482.89  Aligned_cols=391  Identities=17%  Similarity=0.183  Sum_probs=322.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ..++...++|+++++.+|+++|+++.   +.. +..+.+||+||.++++++|++|+++|+++||+|+|+++|++++++++
T Consensus        53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~  128 (580)
T 3etc_A           53 ENFNFAYDVVDVYARDSPEKLAMIWC---DDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM  128 (580)
T ss_dssp             SSCCHHHHTHHHHHHHCTTCEEEEEE---ESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred             ccchHHHHHHHHHHhhCCCCEEEEEE---cCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            34455669999999999999999986   332 33478999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCCh--hhhhhcCccCCCCc-cEEEEecCCChhhHHHhhhcCc
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI--PSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELGV  196 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~--~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~  196 (501)
                      |||+++|++++|++|.++.+++.++++.++++++|++.+..  ..+...... +..+ ..++.++....          .
T Consensus       129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~  197 (580)
T 3etc_A          129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAE-CGDIPLKKAKVGGDVL----------E  197 (580)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHH-HCSCCCEEEEESSSCC----------T
T ss_pred             HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhh-CCCcceEEEEeCCccc----------c
Confidence            99999999999999999999999999999999999988764  333322221 1222 34445543211          1


Q ss_pred             eEeeHHHHHhcCCCCCC-C---CCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEe
Q 010774          197 SCFSWEEFLQLGTLDCE-L---PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF  272 (501)
Q Consensus       197 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~  272 (501)
                      .+..+.+.+........ +   ....++++++|+|||||||.||+|.++|.+++..+......+     .+..++++++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  272 (580)
T 3etc_A          198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYTV  272 (580)
T ss_dssp             TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEEC
T ss_pred             ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEEe
Confidence            24567776655422221 1   245679999999999999999999999999888776644433     67889999999


Q ss_pred             cChHHHHHHHH-HHHHHhcCcEEEEec---CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 010774          273 LPLAHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA  348 (501)
Q Consensus       273 ~pl~~~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (501)
                      .|++|..++.. ++.++..|+++++.+   +++..+++.++++++|+++++|++++.+++.                   
T Consensus       273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-------------------  333 (580)
T 3etc_A          273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-------------------  333 (580)
T ss_dssp             CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-------------------
T ss_pred             CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-------------------
Confidence            99999888775 788999999998873   3999999999999999999999999988741                   


Q ss_pred             HHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceeccc
Q 010774          349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSL  428 (501)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~  428 (501)
                                         .....++        ++||.+++||+++++++.++|.+.+|+++++.||+||++.+++..+
T Consensus       334 -------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~  386 (580)
T 3etc_A          334 -------------------DLSHYNF--------STLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP  386 (580)
T ss_dssp             -------------------CC---CC--------TTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred             -------------------ccccCCC--------ccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence                               1122223        3899999999999999999999999999999999999987666544


Q ss_pred             CCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEec-----CCccccccCCcccchhhhccCcccCCCC
Q 010774          429 ADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG-----NTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       429 ~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g-----~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      .. ...++++|+|+||++++|+| +++++++.|  +.|||+|+|     ++++.|||++|+.|++.|.||||+|||.
T Consensus       387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g--~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDl  459 (580)
T 3etc_A          387 WM-EPKPGSIGKPTPGYKIELMD-RDGRLCEVG--EEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDM  459 (580)
T ss_dssp             TS-CCCTTCCBEECTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEE
T ss_pred             CC-CCCCCccccCCCCCEEEEEC-CCCCCCCCC--CceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcE
Confidence            33 34568999999999999999 999888776  899999997     7899999999999999999999999995

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=9.3e-59  Score=479.26  Aligned_cols=383  Identities=21%  Similarity=0.288  Sum_probs=315.6

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      +...|+.++|.++++.+|+++|+++.   +..    +++||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~   85 (517)
T 3r44_A           13 DKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF   85 (517)
T ss_dssp             GGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence            34578999999999999999999875   322    58999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      |||+++|++++|++|.++.+++.++++.++++++|++......+....... .....++.+..               ..
T Consensus        86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~  149 (517)
T 3r44_A           86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD  149 (517)
T ss_dssp             HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred             HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence            999999999999999999999999999999999999987665543322211 11111111110               01


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                      .+.+.+.......+.....++++++|+|||||||.||||+++|+++.+.+......+     ++..+|++++.+|++|.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  224 (517)
T 3r44_A          150 SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHVA  224 (517)
T ss_dssp             HHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSHH
T ss_pred             cHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHHH
Confidence            233444333333334455789999999999999999999999999999998877666     788999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhcc
Q 010774          280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (501)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (501)
                      ++...+.+++.|+++++.+. ++..+++.++++++|+++++|++++.+.+..                            
T Consensus       225 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------------  276 (517)
T 3r44_A          225 ALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP----------------------------  276 (517)
T ss_dssp             HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSH----------------------------
T ss_pred             HHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc----------------------------
Confidence            99875555559999998875 9999999999999999999999999987622                            


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC-CcccCc
Q 010774          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FNMIGT  437 (501)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~-~~~~~s  437 (501)
                               .....++        ++||.+++||+++++++.+.+.+. ++.+++.||+||++++++...... ....++
T Consensus       277 ---------~~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  338 (517)
T 3r44_A          277 ---------EFAELDA--------PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGS  338 (517)
T ss_dssp             ---------HHHHCCC--------TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTC
T ss_pred             ---------ccccCCC--------CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCC
Confidence                     1222222        389999999999999999999987 999999999999988766554433 455689


Q ss_pred             ccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       438 ~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +|+|+++++++|+| +++..++.+   .|||+|+|++++.|||++|+.|++.|.+|||+|||.
T Consensus       339 ~G~~~~~~~~~i~d-~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl  397 (517)
T 3r44_A          339 AGRATMFTDVAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDI  397 (517)
T ss_dssp             CBEECTTEEEEEEC-TTSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEE
T ss_pred             CCcCCCCeEEEEEC-CCCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEeccee
Confidence            99999999999999 888766654   799999999999999999999999999999999995

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=9.4e-59  Score=481.66  Aligned_cols=382  Identities=18%  Similarity=0.189  Sum_probs=311.6

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.++|+++++++|+++|+++.   +      +.+||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   94 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            368999999999999999999864   2      5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChh----hhhhcCccCCCCccEEEEecCCChhhHHHhhhcCce
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (501)
                      |+++|++++|++|.++.+++.++++.++++++|++.....    ............++.++..+....            
T Consensus        95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  162 (539)
T 1mdb_A           95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------  162 (539)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred             HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence            9999999999999999999999999999999999875321    111111111223344444332110            


Q ss_pred             EeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHH
Q 010774          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (501)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~  277 (501)
                         +.++..............++++++|+|||||||.||||+++|+++++.+......+     .+..+|++++.+|++|
T Consensus       163 ---~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h  234 (539)
T 1mdb_A          163 ---FLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH  234 (539)
T ss_dssp             ---SEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred             ---hhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeecccc
Confidence               11111111111122345678999999999999999999999999999988776665     7789999999999999


Q ss_pred             HHHHHH--HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       278 ~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      .+++..  ++.+|+.|+++++.+. ++..+++.++++++|+++++|++++.+++......                    
T Consensus       235 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------  294 (539)
T 1mdb_A          235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR--------------------  294 (539)
T ss_dssp             HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC--------------------
T ss_pred             cchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC--------------------
Confidence            999874  7889999999999875 99999999999999999999999999886432210                    


Q ss_pred             hhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcc
Q 010774          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (501)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (501)
                                       .++        ++||.+++||+++++++.++|++.+|+.+++.||+||++..++.........
T Consensus       295 -----------------~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~  349 (539)
T 1mdb_A          295 -----------------DDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII  349 (539)
T ss_dssp             -----------------CCC--------TTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred             -----------------CCc--------cceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhc
Confidence                             011        3899999999999999999999989999999999999654333211111234


Q ss_pred             cCcccccccC-eEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          435 IGTVGVPMTT-VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       435 ~~s~G~p~p~-~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      .+++|+|+++ .+++|+| +++++++.|  ++|||+|+|++++.|||++|+.|++.| .||||+|||.
T Consensus       350 ~~~~G~p~~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl  414 (539)
T 1mdb_A          350 VNTQGKPMSPYDESRVWD-DHDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI  414 (539)
T ss_dssp             HHCCCEESSTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEE
T ss_pred             CCCCCcccCCCceEEEEC-CCCCCCcCC--CcceEEeeCcccchhhcCChhhhhhhccCCCCeecCce
Confidence            5789999976 5899999 888888776  899999999999999999999999999 7999999995

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.3e-57  Score=473.75  Aligned_cols=405  Identities=21%  Similarity=0.304  Sum_probs=321.3

Q ss_pred             CCcccccccCCCCCCCCCCCCCHHH-HHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCC
Q 010774           23 GPVYRCIYAKDGLLESPAGLESPWQ-FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP  101 (501)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~tl~~-~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~  101 (501)
                      .+++++..+....    ....++.+ .|.++++++ +++|+++.   +..    +.+||+||.++++++|++|+++|+++
T Consensus         9 ~~~~~~~~~~~~~----p~~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~   76 (548)
T 2d1s_A            9 NIVVGPKPFYPIE----EGSAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVV   76 (548)
T ss_dssp             TSEECCCCSSCCC----SSCHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCT
T ss_pred             ceEecCCCCCCCC----CCcCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCC
Confidence            3455555433222    22357999 899999999 99999863   221    58999999999999999999999999


Q ss_pred             CCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEec
Q 010774          102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA  181 (501)
Q Consensus       102 gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~  181 (501)
                      ||+|+++++|++++++++|||+++|++++|++|.++.+++.++|+.++++++|++.+....+...... ......++.++
T Consensus        77 gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~  155 (548)
T 2d1s_A           77 DGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKT-VTTIKTIVILD  155 (548)
T ss_dssp             TCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHH-STTCCEEEETT
T ss_pred             CCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcC-CCCCCEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999876655433211 12234555554


Q ss_pred             CCChhhHHHhhhcCceEeeHHHHHhcCCCC-CCCCCC------CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcce
Q 010774          182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLD-CELPPK------KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ  254 (501)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~  254 (501)
                      .....         .....++++....... .+....      .++++++|+|||||||.||||++||+++.+.+.....
T Consensus       156 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~  226 (548)
T 2d1s_A          156 SKVDY---------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARD  226 (548)
T ss_dssp             CSSCB---------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTC
T ss_pred             Ccccc---------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhc
Confidence            32100         0123456665443111 111111      2388999999999999999999999999988877655


Q ss_pred             eeeeccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHH
Q 010774          255 MFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  332 (501)
Q Consensus       255 ~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  332 (501)
                      .+.  ...+..+|++++.+|++|.+++.. ++.++ .|+++++.+. ++..+++.++++++|+++++|++++.+++.   
T Consensus       227 ~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---  300 (548)
T 2d1s_A          227 PIY--GNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS---  300 (548)
T ss_dssp             TTT--SCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC---
T ss_pred             hhh--ccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC---
Confidence            410  026778999999999999999886 56667 9999998874 999999999999999999999999998752   


Q ss_pred             HhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCe
Q 010774          333 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPL  411 (501)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l  411 (501)
                                                        +.....++        ++||.+++||+++++++.+++.+.+ ++.+
T Consensus       301 ----------------------------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i  338 (548)
T 2d1s_A          301 ----------------------------------ELLNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPGV  338 (548)
T ss_dssp             ----------------------------------SCGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCC
T ss_pred             ----------------------------------cccccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCce
Confidence                                              11111122        3899999999999999999999998 6789


Q ss_pred             eeeecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-
Q 010774          412 TQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-  490 (501)
Q Consensus       412 ~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-  490 (501)
                      ++.||+||++.+++..... ....+++|+|+|+++++|+|.+++++++.|  +.|||+|+|++++.|||++|+.|++.| 
T Consensus       339 ~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~  415 (548)
T 2d1s_A          339 RQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELID  415 (548)
T ss_dssp             EEEEECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred             eeccccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcCccCCCC--CCeEEEECCHHHhhhhcCChHHhhhccc
Confidence            9999999999877664332 345589999999999999995567766665  899999999999999999999999999 


Q ss_pred             ccCcccCCCC
Q 010774          491 VDGWFHTEVH  500 (501)
Q Consensus       491 ~dgw~~TGD~  500 (501)
                      .+|||+|||.
T Consensus       416 ~~g~~~TGDl  425 (548)
T 2d1s_A          416 EEGWLHTGDI  425 (548)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCcEEEccCE
Confidence            7999999995

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1.2e-58  Score=475.19  Aligned_cols=387  Identities=16%  Similarity=0.188  Sum_probs=303.2

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ...++.++|.++++++|+++|+++....++..+..+++||+||.++++++|++|+++|+ +||+|+|+++|++++++++|
T Consensus        22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l  100 (480)
T 3t5a_A           22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL  100 (480)
T ss_dssp             --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence            35789999999999999999999871111223445799999999999999999999996 99999999999999999999


Q ss_pred             HHHhcCCEEEEecC---CCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCC-CccEEEEecCCChhhHHHhhhcCc
Q 010774          121 ACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL-YLKTIVSFANVSSSQKKEAEELGV  196 (501)
Q Consensus       121 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~  196 (501)
                      ||+++|++++|+++   .++.+++.++|+.++++++|++.+....+......... ....++.++..             
T Consensus       101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  167 (480)
T 3t5a_A          101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL-------------  167 (480)
T ss_dssp             HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS-------------
T ss_pred             HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc-------------
Confidence            99999999999999   78899999999999999999999887766544332211 11122222211             


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCC------CcEEE
Q 010774          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE------EDTYF  270 (501)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~------~d~~l  270 (501)
                              ..............++++++|+|||||||.||||++||+++++.+..+...+     ....      +|+++
T Consensus       168 --------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~l  234 (480)
T 3t5a_A          168 --------DLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSALV  234 (480)
T ss_dssp             --------CTTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEEE
T ss_pred             --------ccccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeEE
Confidence                    1111112223445678999999999999999999999999999888776655     4444      89999


Q ss_pred             EecChHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010774          271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (501)
Q Consensus       271 ~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (501)
                      +.+|++|.+|+.. ++.+++.|+++++.+.     ++..+++.++++++| +.++|+++..++.....            
T Consensus       235 ~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~------------  301 (480)
T 3t5a_A          235 SWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT------------  301 (480)
T ss_dssp             ECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC------------
T ss_pred             EeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC------------
Confidence            9999999999875 7899999999999862     899999999999999 88999998887753210            


Q ss_pred             HHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC------CCeeeeeccc
Q 010774          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGLT  418 (501)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~------~~l~~~yG~t  418 (501)
                                           .+.....++        ++||.+++||+++++++.++|.+.++      +.+++.||+|
T Consensus       302 ---------------------~~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~T  352 (480)
T 3t5a_A          302 ---------------------DDDMAGRDL--------GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLA  352 (480)
T ss_dssp             ---------------------TGGGTTCCC--------TTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEET
T ss_pred             ---------------------cccccccch--------hhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhcccccccc
Confidence                                 111112222        38999999999999999999999873      3799999999


Q ss_pred             ccCcceecccCCC------------------------CcccCcccccccCeEEEEeecCC-CCccCCCCCCCceEEEecC
Q 010774          419 ESCSGCFTSLADV------------------------FNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGN  473 (501)
Q Consensus       419 E~~~~~~~~~~~~------------------------~~~~~s~G~p~p~~~i~I~d~~~-~~~~~~~~~~~Gei~v~g~  473 (501)
                      |++.+++......                        ....+++|+|++ ++++|+| ++ +++++.|  ++|||||+|+
T Consensus       353 E~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g~~~~~g--~~GEl~v~g~  428 (480)
T 3t5a_A          353 EATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTCIECPDG--TVGEIWVHGD  428 (480)
T ss_dssp             TTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTTEECCTT--BCEEEEEEST
T ss_pred             ccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCCcCCCCC--CEEEEEEeCC
Confidence            9998877654432                        123468999999 9999999 66 6777766  9999999999


Q ss_pred             CccccccCCcccchhhh------------ccCcccCCCC
Q 010774          474 TLFSGYYKRPDLTEEVI------------VDGWFHTEVH  500 (501)
Q Consensus       474 ~v~~gY~~~~~~~~~~~------------~dgw~~TGD~  500 (501)
                      +++.|||++|+.|++.|            .+|||+|||.
T Consensus       429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDl  467 (480)
T 3t5a_A          429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDS  467 (480)
T ss_dssp             TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEE
T ss_pred             ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccce
Confidence            99999999999999988            3579999995

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=4.7e-57  Score=471.27  Aligned_cols=388  Identities=17%  Similarity=0.237  Sum_probs=320.1

Q ss_pred             CCCCHHHHHHHHHHh-----CCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchh
Q 010774           41 GLESPWQFFCDSAKR-----IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPE  114 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~-----~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~~  114 (501)
                      ..+++.++|+++++.     +|+++|+++.   +.. +..+.+||+||.++++++|++|.+. |+++||+|+|+++|+++
T Consensus        36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e  111 (570)
T 3c5e_A           36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE  111 (570)
T ss_dssp             BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred             cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence            345678999999999     9999999986   422 2236899999999999999999998 99999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhc
Q 010774          115 WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (501)
Q Consensus       115 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  194 (501)
                      +++++|||+++|++++|++|.++.+++.++++.++++++|++.+....+..... ....++.++.++....         
T Consensus       112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------  181 (570)
T 3c5e_A          112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC---------  181 (570)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC---------
T ss_pred             HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc---------
Confidence            999999999999999999999999999999999999999999887766544332 2234455555543211         


Q ss_pred             CceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHH--HHhhcceeeeeccccCCCCcEEEEe
Q 010774          195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EVLSVDQMFVVTGKVCSEEDTYFSF  272 (501)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~l~~  272 (501)
                       .....+++++.............++++++|+|||||||.||||+++|+ ++.  ..... ..+     ++..+|++++.
T Consensus       182 -~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~~~  253 (570)
T 3c5e_A          182 -DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMWTI  253 (570)
T ss_dssp             -TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEEEC
T ss_pred             -cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEEEc
Confidence             013456666654432223344567899999999999999999999999 544  33332 333     67899999999


Q ss_pred             cChHHHHHHHH-HHHHHhcCcEEEEec---CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 010774          273 LPLAHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA  348 (501)
Q Consensus       273 ~pl~~~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (501)
                      +|++|.+++.. ++.++..|+++++..   +++..+++.++++++|+++++|++++.+++.                   
T Consensus       254 ~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------  314 (570)
T 3c5e_A          254 SDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ-------------------  314 (570)
T ss_dssp             CCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS-------------------
T ss_pred             CchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc-------------------
Confidence            99999999884 788999999999985   3999999999999999999999999998751                   


Q ss_pred             HHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceeccc
Q 010774          349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSL  428 (501)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~  428 (501)
                                        . ....++        ++||.+++||+++++++.++|.+.+|+.+++.||+||++.+++...
T Consensus       315 ------------------~-~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~  367 (570)
T 3c5e_A          315 ------------------D-LSSYKF--------PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK  367 (570)
T ss_dssp             ------------------C-TTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCT
T ss_pred             ------------------c-cccccc--------ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCc
Confidence                              0 000111        3899999999999999999999988999999999999987665543


Q ss_pred             CCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEe-----cCCccccccCCcccchhhhccCcccCCCC
Q 010774          429 ADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLR-----GNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       429 ~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~-----g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      .. ....+++|+|+++++++|+| +++++++.|  ++|||+|+     |++++.|||++|+.|++.|.+|||+|||.
T Consensus       368 ~~-~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G--~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDl  440 (570)
T 3c5e_A          368 TM-KIKPGYMGTAASCYDVQIID-DKGNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDR  440 (570)
T ss_dssp             TS-CCCTTCCCEECTTCCEEEEC-TTSCBCCTT--CCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEE
T ss_pred             cc-ccCCCcccccCCCceEEEEC-CCCCCCCCC--CCCeeEEeccCCCCchhhccccCChhHhhhhhcCCcccccee
Confidence            32 34558999999999999999 889888776  89999999     99999999999999999999999999995

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.8e-57  Score=469.21  Aligned_cols=376  Identities=20%  Similarity=0.258  Sum_probs=313.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ...|+.+.|+++++++|+++|+++.    +     +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l   74 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG   74 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4578999999999999999999874    3     689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEee
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (501)
                      ||+++|++++|++|.++.+++.++++.++++++|++.+....+..... .......++.++....              .
T Consensus        75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~  139 (509)
T 3ivr_A           75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP-SLGGVKKAYAIGDGSG--------------P  139 (509)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGG-GCSSCCEEEESSCCCS--------------S
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhc-ccCCceEEEEcCCCCc--------------C
Confidence            999999999999999999999999999999999999987766444432 3345566666654211              1


Q ss_pred             HHHHHh-cCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          201 WEEFLQ-LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       201 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                      +.++.. ............++++++|+|||||||.||||+++|+++++.+..+...+     ++..+|++++.+|++|.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  214 (509)
T 3ivr_A          140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT  214 (509)
T ss_dssp             CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred             hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence            111222 11222333455789999999999999999999999999999998877766     788999999999999999


Q ss_pred             HHHHHHH-HHhcCcEEEEecCCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhcc
Q 010774          280 DQIIETH-CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (501)
Q Consensus       280 g~~~~~~-~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (501)
                      ++...+. .+..|+++++...++..+++.++++++|+++++|+++..+++..                            
T Consensus       215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----------------------------  266 (509)
T 3ivr_A          215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA----------------------------  266 (509)
T ss_dssp             HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC----------------------------
T ss_pred             HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc----------------------------
Confidence            9987665 45555555555569999999999999999999999999988631                            


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCCCcccCc
Q 010774          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGT  437 (501)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s  437 (501)
                                 ...++        +++|.++.+|++   +..+.+.+.+ ++.+++.||+||++++++......  ...+
T Consensus       267 -----------~~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~--~~~~  322 (509)
T 3ivr_A          267 -----------APAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD--RPKS  322 (509)
T ss_dssp             -----------CGGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG--STTS
T ss_pred             -----------cccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc--CCCc
Confidence                       00111        389999999987   8888888888 899999999999998776654432  2255


Q ss_pred             ccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       438 ~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +|+|+++++++|+| +++++++.|  ++|||+|+|++++.|||++|+.|++.|.+|||+|||.
T Consensus       323 ~G~p~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl  382 (509)
T 3ivr_A          323 AGRPLFWRTVAVVD-AEDRPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDM  382 (509)
T ss_dssp             CCEECTTCEEEEEC-TTSCBCCTT--CCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEE
T ss_pred             ccccCCCcEEEEEC-CCCCCCCCC--CceEEEEecCCccccccCCHHHhHHHhhcCCcccccE
Confidence            99999999999999 888888776  9999999999999999999999999999999999995

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=4.1e-57  Score=472.47  Aligned_cols=366  Identities=18%  Similarity=0.216  Sum_probs=304.8

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....++.++|+++++++|+++|+++.   +      +++||+||.++++++|++|+++|+++||+|+|+++|++++++++
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~  142 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL  142 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34578999999999999999999875   3      58999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      |||+++|++++|++|.++.+++.++++.++++++|++......+.        ....+. +.+..               
T Consensus       143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~-~~~~~---------------  198 (570)
T 4gr5_A          143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT--------GTTTLY-VEDEA---------------  198 (570)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC--------SSEEEE-CCC-----------------
T ss_pred             HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc--------CCccee-eeccc---------------
Confidence            999999999999999999999999999999999999886544321        111111 11110               


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                           ..............++++++|+|||||||.||||+++|+++.+.+... ..+     .+..+|++++.+|++|..
T Consensus       199 -----~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~~~  267 (570)
T 4gr5_A          199 -----ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSWDA  267 (570)
T ss_dssp             ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTSST
T ss_pred             -----cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccHHH
Confidence                 000111122334567999999999999999999999999998776652 222     678899999999999877


Q ss_pred             HHHHHHHHHhcCcEEEEecC---CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010774          280 DQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (501)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (501)
                      +...++.+++.|+++++.+.   ++..+++.++++++|+++++|++++.+++....                        
T Consensus       268 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------------------  323 (570)
T 4gr5_A          268 FGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE------------------------  323 (570)
T ss_dssp             HHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG------------------------
T ss_pred             HHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh------------------------
Confidence            76678889999999999763   899999999999999999999999998763110                        


Q ss_pred             ccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCC---C
Q 010774          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---F  432 (501)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~---~  432 (501)
                                      ++        ++||.+++||+++++++.+++.+.+ ++.+++.||+||++++++......   .
T Consensus       324 ----------------~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~  379 (570)
T 4gr5_A          324 ----------------AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLS  379 (570)
T ss_dssp             ----------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTT
T ss_pred             ----------------hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccC
Confidence                            01        3899999999999999999998887 789999999999988766543322   2


Q ss_pred             cccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-cc--------CcccCCCC
Q 010774          433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD--------GWFHTEVH  500 (501)
Q Consensus       433 ~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~d--------gw~~TGD~  500 (501)
                      ....++|+|+++++++|+| +++++++.|  ++|||+|+|++++.|||++|+.|++.| .|        |||+|||.
T Consensus       380 ~~~~~iG~p~~~~~v~i~d-~~~~~~~~G--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDl  453 (570)
T 4gr5_A          380 GTALPIGVPLAGKRAYVLD-DDLKPAANG--ALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDL  453 (570)
T ss_dssp             SSSCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEE
T ss_pred             CCccccceeeCCCEEEEEC-CCCCCCCCC--CcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCe
Confidence            3346799999999999999 999888776  999999999999999999999999988 33        79999995

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=5.8e-57  Score=464.78  Aligned_cols=371  Identities=20%  Similarity=0.251  Sum_probs=301.1

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      +.|+.++|.++++++|+++|+++.   +.+    +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   73 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999864   322    6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEE--cCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV--QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      |+++|++++|++|.++.+++.++++.++++++|+  +......+.....    .++ ++.                    
T Consensus        74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~-~~~--------------------  128 (504)
T 1t5h_X           74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS----GAR-IIF--------------------  128 (504)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC----CCE-EEE--------------------
T ss_pred             HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc----cce-eEE--------------------
Confidence            9999999999999999999999999999999999  6654443311111    111 222                    


Q ss_pred             eHHHHHhcC-----CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccC--CCCcEEEEe
Q 010774          200 SWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSF  272 (501)
Q Consensus       200 ~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~  272 (501)
                       ++++....     ..........++++++|+|||||||.||||+++|+++.+.+..+...+     ++  ..+|++++.
T Consensus       129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~  202 (504)
T 1t5h_X          129 -LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL  202 (504)
T ss_dssp             -GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred             -ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence             22221110     111111344678999999999999999999999999998887765554     55  788999999


Q ss_pred             cChHHHHHHH-HHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 010774          273 LPLAHIYDQI-IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (501)
Q Consensus       273 ~pl~~~~g~~-~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (501)
                      +|++|.+++. .++.+++.|+++++.+. ++..+++.++++++|+++++|++++.+++.....                 
T Consensus       203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------  265 (504)
T 1t5h_X          203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA-----------------  265 (504)
T ss_dssp             SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred             cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence            9999999986 48899999999999875 9999999999999999999999999987632100                 


Q ss_pred             HHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCC
Q 010774          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD  430 (501)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~  430 (501)
                                        ....++        ++||.+++||+++++++.++|++.++..+++.||+||++ ++....  
T Consensus       266 ------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~--  316 (504)
T 1t5h_X          266 ------------------GSSLKL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR--  316 (504)
T ss_dssp             ------------------TCCCCC--------TTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred             ------------------cccccC--------ccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence                              000011        389999999999999999999999999999999999993 333222  


Q ss_pred             CCcccCcccccccCeEEEEeecCCC---CccCCCCCCCceEEEe-cCCccccccCCcccchhhhccCcccCCCC
Q 010774          431 VFNMIGTVGVPMTTVEARLESVPEM---GYDALSSVPRGEICLR-GNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       431 ~~~~~~s~G~p~p~~~i~I~d~~~~---~~~~~~~~~~Gei~v~-g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                       ....+++|+|.++++++|+| +++   +.++.|  +.|||+|+ |++++.|||++|+.|++.|.||||+|||.
T Consensus       317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g--~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDl  386 (504)
T 1t5h_X          317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDV  386 (504)
T ss_dssp             -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTT--CCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEE
T ss_pred             -CCCCCccccCCCCCceeEEe-ccCCCCCcCCCC--CcceEEEeCCceeeceecCCchhhhhhhcCCccccCcE
Confidence             23458899999999999999 766   666655  89999999 99999999999999999999999999995

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=5e-57  Score=468.20  Aligned_cols=387  Identities=18%  Similarity=0.227  Sum_probs=309.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      .++++.++|+++++ +|+++|+++.   +      +++||+||.++++++|++|+++|+++||+|+++++|++++++++|
T Consensus        22 ~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l   91 (529)
T 2v7b_A           22 LFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL   91 (529)
T ss_dssp             CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred             ceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            44568999999999 9999999864   2      479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCc-cEEEEecCCChhhHHHhhhcCceEe
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      ||+++|++++|+++.++.+++.++++.++++++|++.+....+....... ... ..++.++.....        .....
T Consensus        92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~  162 (529)
T 2v7b_A           92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESE--------PRLAP  162 (529)
T ss_dssp             HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----CCEEEEECC--------------CCC
T ss_pred             HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cccCceEEEecccccc--------ccccc
Confidence            99999999999999999999999999999999999987665543322111 122 334443322110        00122


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHH-HHHHhhcceeeeeccccCCCCcEEEEecChHHH
Q 010774          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (501)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (501)
                      .++++..............++++++|+|||||||.||||+++|+++ ..........+     .+..+|++++.+|++|.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~  237 (529)
T 2v7b_A          163 LFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLFFA  237 (529)
T ss_dssp             BHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTTSH
T ss_pred             chhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHHHH
Confidence            4666655332222333456789999999999999999999999999 66665554444     77899999999999999


Q ss_pred             HHHHH-HHHHHhcCcEEEEec--CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010774          279 YDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (501)
Q Consensus       279 ~g~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (501)
                      +++.. ++.++..|+++++..  +++..+++.++++++|+++++|+++..+++...                        
T Consensus       238 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------  293 (529)
T 2v7b_A          238 YGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN------------------------  293 (529)
T ss_dssp             HHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT------------------------
T ss_pred             HHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc------------------------
Confidence            99875 678999999999873  399999999999999999999999998864100                        


Q ss_pred             hccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCccc
Q 010774          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI  435 (501)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~  435 (501)
                                .+...           ..++|.+++||+++++++.++|.+.+|+.+++.||+||++.+++...... ...
T Consensus       294 ----------~~~~~-----------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~~  351 (529)
T 2v7b_A          294 ----------LPARA-----------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-VEY  351 (529)
T ss_dssp             ----------CCCGG-----------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-CCT
T ss_pred             ----------ccccc-----------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-Ccc
Confidence                      00000           02799999999999999999999999999999999999977665544333 445


Q ss_pred             CcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       436 ~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +++|+|+++++++|+| +++++++.|  ++|||+|+|++++.|||++++.|++.|.+|||+|||.
T Consensus       352 ~~~G~p~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl  413 (529)
T 2v7b_A          352 GTTGRPVPGYEIELRD-EAGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDK  413 (529)
T ss_dssp             TSCCEECTTCEEEEEC-TTSCBCCTT--SCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEE
T ss_pred             CCcccCCCCCEEEEEC-CCCCCCCCC--CccEEEEecCCcccccCCChHHHHHhhhcCCcccCce
Confidence            8999999999999999 999888776  8999999999999999999999999999999999994

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=3.2e-57  Score=479.65  Aligned_cols=400  Identities=14%  Similarity=0.186  Sum_probs=321.3

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      +++.++|+++++++|+++|+++.   +...+..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||
T Consensus        76 n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~  152 (652)
T 1pg4_A           76 NLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC  152 (652)
T ss_dssp             CHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred             hHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            45788999999999999999986   433344578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChh---------hhhhcCccCC-CCccEEEEecCCChhhHHHhh
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCC-LYLKTIVSFANVSSSQKKEAE  192 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~---------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~  192 (501)
                      +++|++++|+++.++.+++.++++.++++++|+++....         .+.+...... ..+..++.+........    
T Consensus       153 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~----  228 (652)
T 1pg4_A          153 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID----  228 (652)
T ss_dssp             HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC----
T ss_pred             HHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc----
Confidence            999999999999999999999999999999999876432         1212111110 13456666653211000    


Q ss_pred             hcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHh-hcceeeeeccccCCCCcEEEE
Q 010774          193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL-SVDQMFVVTGKVCSEEDTYFS  271 (501)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~-~~~~~~~~~~~~~~~~d~~l~  271 (501)
                      ........+++++.............++++++|+|||||||.||||+++|++++.... .+...+     ++..+|++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~  303 (652)
T 1pg4_A          229 WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYWC  303 (652)
T ss_dssp             CCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEEE
T ss_pred             ccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence            0001134677777544322333445678999999999999999999999999887664 333334     6789999999


Q ss_pred             ecChHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHH
Q 010774          272 FLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF  345 (501)
Q Consensus       272 ~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (501)
                      ..|++|.+++.+ ++.+|+.|+++++.+.     ++..+++.++++++|+++++|++++.+++....             
T Consensus       304 ~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------------  370 (652)
T 1pg4_A          304 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK-------------  370 (652)
T ss_dssp             CSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG-------------
T ss_pred             ccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc-------------
Confidence            999999999964 8899999999999863     789999999999999999999999998752110             


Q ss_pred             HHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC---CCeeeeecccccCc
Q 010774          346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCS  422 (501)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~---~~l~~~yG~tE~~~  422 (501)
                                            ...++++        ++||.+++||+++++++.+++.+.+|   +.+++.||+||+++
T Consensus       371 ----------------------~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~  420 (652)
T 1pg4_A          371 ----------------------AIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG  420 (652)
T ss_dssp             ----------------------GTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSS
T ss_pred             ----------------------ccccCCc--------CceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccccc
Confidence                                  0111222        38999999999999999999999887   89999999999998


Q ss_pred             ceecccCC-CCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEec--CCccccccCCcccchhhh---ccCccc
Q 010774          423 GCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWFH  496 (501)
Q Consensus       423 ~~~~~~~~-~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~dgw~~  496 (501)
                      +++..... ....++++|+|++|++++|+| +++++++.|  +.|||+|+|  |+++.|||++++.+.+.+   .+|||+
T Consensus       421 ~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~  497 (652)
T 1pg4_A          421 FMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF  497 (652)
T ss_dssp             CSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEE
T ss_pred             ceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEE
Confidence            76655432 234568999999999999999 889887765  899999999  799999999999888776   389999


Q ss_pred             CCCC
Q 010774          497 TEVH  500 (501)
Q Consensus       497 TGD~  500 (501)
                      |||.
T Consensus       498 TGDl  501 (652)
T 1pg4_A          498 SGDG  501 (652)
T ss_dssp             EEEE
T ss_pred             CCcE
Confidence            9995

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.6e-57  Score=468.44  Aligned_cols=377  Identities=22%  Similarity=0.334  Sum_probs=306.7

Q ss_pred             HHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 010774           47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA  126 (501)
Q Consensus        47 ~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G  126 (501)
                      ++|.+.++++|+++++...   +.. +  +++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus         4 ~l~~~~a~~~p~~~a~~~~---~~~-~--~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   77 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIE---TAA-G--DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG   77 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEE---ETT-C--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCCCceEEEe---cCC-C--cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            4688999999999999864   211 1  589999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHHHHHh
Q 010774          127 ITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ  206 (501)
Q Consensus       127 ~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (501)
                      ++++|++|.++.+++.++++.++++++|++.+....+....... .  ..+..+.....             ..+.+...
T Consensus        78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~  141 (503)
T 4fuq_A           78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA  141 (503)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence            99999999999999999999999999999986554433222111 0  13333332211             01222222


Q ss_pred             cCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHH-HH
Q 010774          207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET  285 (501)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~  285 (501)
                      ............++++++|+|||||||.||||+++|+++.+....+...+     .+..+|++++.+|++|.+|+.. .+
T Consensus       142 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~  216 (503)
T 4fuq_A          142 GASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVASN  216 (503)
T ss_dssp             TSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCHH
T ss_pred             cCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHHH
Confidence            22222233455679999999999999999999999999999988877766     7889999999999999999764 77


Q ss_pred             HHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCC
Q 010774          286 HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK  364 (501)
Q Consensus       286 ~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (501)
                      .+++.|+++++.+. ++..+++.++  ++|+++++|+++..+++.                                   
T Consensus       217 ~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~-----------------------------------  259 (503)
T 4fuq_A          217 VTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQS-----------------------------------  259 (503)
T ss_dssp             HHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTC-----------------------------------
T ss_pred             HHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhC-----------------------------------
Confidence            88999999998875 9999999998  899999999999998752                                   


Q ss_pred             cchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccC
Q 010774          365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTT  444 (501)
Q Consensus       365 ~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~  444 (501)
                        +.....++        +++|.+++||+++++++.+.|.+.+++++++.||+||++.+++. ..+....++++|+|+|+
T Consensus       260 --~~~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~-~~~~~~~~~~~G~p~~~  328 (503)
T 4fuq_A          260 --PRLTKETT--------GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSN-PYDGDRVPGAVGPALPG  328 (503)
T ss_dssp             --TTCSTTTT--------TTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCC-CSSSCCCTTEEEEBCTT
T ss_pred             --CCccccch--------hhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCccccc-CCCCCCcCCccccCCCC
Confidence              11111112        38999999999999999999999999999999999999876543 33344556899999999


Q ss_pred             eEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          445 VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       445 ~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      ++++|+|.+++++++.|  ++|||+|+|++++.|||++|+.|++.| .||||+|||.
T Consensus       329 ~~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl  383 (503)
T 4fuq_A          329 VSARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDL  383 (503)
T ss_dssp             CEEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEE
T ss_pred             eEEEEEECCCCCCCcCC--CceEEEEECCchhhhhcCChhhhHhhhCCCCCeEccee
Confidence            99999995667777666  999999999999999999999999999 6999999995

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=7.6e-57  Score=476.95  Aligned_cols=401  Identities=19%  Similarity=0.240  Sum_probs=320.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~-~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      +++.+.|+++++.+|+++|+++.   +...+..+++||+||.++++++|++|+ ++|+++||+|+|+++|++++++++||
T Consensus        82 n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA  158 (663)
T 1ry2_A           82 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA  158 (663)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             cHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            56889999999999999999986   433344578999999999999999999 99999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChh---------hhhhcCccCCCCccEEEEecCCChhhHHHhh
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCLYLKTIVSFANVSSSQKKEAE  192 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  192 (501)
                      |+++|++++|+++.++.+++.++++.+++++||+++....         .+.+.. .....++.++++........   .
T Consensus       159 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~~---~  234 (663)
T 1ry2_A          159 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL-RETPGVRHVLVYRKTNNPSV---A  234 (663)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHT-TSCTTCCEEEEECSSCCSSC---C
T ss_pred             HHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHH-HhCCCCceEEEEecCCCCcc---c
Confidence            9999999999999999999999999999999999876532         121222 22234566666653211000   0


Q ss_pred             hcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-cceeeeeccccCCCCcEEEE
Q 010774          193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFS  271 (501)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~l~  271 (501)
                      ........+++++.......+.....++++++|+|||||||.||||+++|.+++..... +...+     .+..+|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~  309 (663)
T 1ry2_A          235 FHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFFT  309 (663)
T ss_dssp             CCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEEE
T ss_pred             cCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEEEE
Confidence            00112346777765443223344456789999999999999999999999998876643 33334     6788999999


Q ss_pred             ecChHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHH
Q 010774          272 FLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF  345 (501)
Q Consensus       272 ~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (501)
                      ..|++|..++.+ ++.+|+.|+++++.+.     ++..+++.|+++++|+++++|++++.+.+..               
T Consensus       310 ~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---------------  374 (663)
T 1ry2_A          310 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG---------------  374 (663)
T ss_dssp             CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC---------------
T ss_pred             cCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcC---------------
Confidence            999999999864 8899999999999863     7899999999999999999999999886421               


Q ss_pred             HHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC---CCeeeeecccccCc
Q 010774          346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCS  422 (501)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~---~~l~~~yG~tE~~~  422 (501)
                                          ....++.++        ++||.+++||+++++++.+++.+.+|   +.+++.||+||+++
T Consensus       375 --------------------~~~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~  426 (663)
T 1ry2_A          375 --------------------DSYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS  426 (663)
T ss_dssp             --------------------TTSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCS
T ss_pred             --------------------ccccccCCc--------CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccC
Confidence                                000111222        38999999999999999999999887   89999999999987


Q ss_pred             ceecccC--CCCcccCcccccccCeEEEEeecC-CCCccCCCCCCCceEEEec--CCccccccCCcccchhhh---ccCc
Q 010774          423 GCFTSLA--DVFNMIGTVGVPMTTVEARLESVP-EMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGW  494 (501)
Q Consensus       423 ~~~~~~~--~~~~~~~s~G~p~p~~~i~I~d~~-~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~dgw  494 (501)
                      +++....  ....+++++|+|++|++++|+| + ++++++. .++.|||+|+|  |+++.|||++++.+.+.|   .+||
T Consensus       427 ~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~  504 (663)
T 1ry2_A          427 HLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGY  504 (663)
T ss_dssp             CSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTS
T ss_pred             eeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCE
Confidence            7665543  2244569999999999999999 7 7877765 13899999999  589999999999988877   3899


Q ss_pred             ccCCCC
Q 010774          495 FHTEVH  500 (501)
Q Consensus       495 ~~TGD~  500 (501)
                      |+|||.
T Consensus       505 y~TGDl  510 (663)
T 1ry2_A          505 YFTGDG  510 (663)
T ss_dssp             EEEEEE
T ss_pred             EEcCCE
Confidence            999995

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.6e-56  Score=495.81  Aligned_cols=419  Identities=22%  Similarity=0.290  Sum_probs=330.4

Q ss_pred             CCCCCCCCCCCcccccccCCCCCCCCCCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHH
Q 010774           14 PAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSA   93 (501)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~   93 (501)
                      ...+..+....+|++..+...+    +...|+.++|.++++++|+++|+++.   +..    +.+||+||.++++++|++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~  104 (979)
T 3tsy_A           36 EKQSNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAAN  104 (979)
T ss_dssp             ---------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHH
T ss_pred             hhcccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHH
Confidence            3344455667778777665333    33579999999999999999999875   322    589999999999999999


Q ss_pred             HHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCC
Q 010774           94 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY  173 (501)
Q Consensus        94 L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~  173 (501)
                      |+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++.+..+.+.......   
T Consensus       105 L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---  181 (979)
T 3tsy_A          105 FHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD---  181 (979)
T ss_dssp             HHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS---
T ss_pred             HHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC---
Confidence            99999999999999999999999999999999999999999999999999999999999999987766554332211   


Q ss_pred             ccEEEEecCCChhhHHHhhhcCceEeeHHHHHhcCCC---CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHh
Q 010774          174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL  250 (501)
Q Consensus       174 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~  250 (501)
                      ...++.++.....      ........+.++......   ..+.....++++++|+|||||||.||||+++|+++++.+.
T Consensus       182 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~  255 (979)
T 3tsy_A          182 GVVIVCIDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVA  255 (979)
T ss_dssp             CCEEEECCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHH
T ss_pred             CceEEEeCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHH
Confidence            1234444332110      001123455555433311   2233445789999999999999999999999999998876


Q ss_pred             hcceeeeeccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHH
Q 010774          251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYT  328 (501)
Q Consensus       251 ~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  328 (501)
                      ...... .....+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++
T Consensus       256 ~~~~~~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  334 (979)
T 3tsy_A          256 QQVDGE-NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAK  334 (979)
T ss_dssp             HHHCSS-SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred             HHHHhh-cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHh
Confidence            654321 11125778999999999999999975 7889999999999875 99999999999999999999999999876


Q ss_pred             HHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-
Q 010774          329 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-  407 (501)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-  407 (501)
                      .                                     ......++        ++||.+++||+++++++.+++.+.+ 
T Consensus       335 ~-------------------------------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~  369 (979)
T 3tsy_A          335 S-------------------------------------SETEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFP  369 (979)
T ss_dssp             C-------------------------------------GGGGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCT
T ss_pred             C-------------------------------------ccccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCC
Confidence            2                                     11222222        3899999999999999999999988 


Q ss_pred             CCCeeeeecccccCcceeccc----CCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCc
Q 010774          408 GAPLTQGYGLTESCSGCFTSL----ADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP  483 (501)
Q Consensus       408 ~~~l~~~yG~tE~~~~~~~~~----~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~  483 (501)
                      ++.+++.||+||++.+++...    .......+++|+|+++++++|+|.+++.+++.|  ++|||+|+|++++.|||++|
T Consensus       370 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g--~~GEl~i~g~~v~~GY~~~p  447 (979)
T 3tsy_A          370 NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNP  447 (979)
T ss_dssp             TCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTT--CCEEEEEESTTSCSEETTCH
T ss_pred             CCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCC--CccEEEEECCCccccccCCh
Confidence            899999999999998765432    122345689999999999999994456767665  89999999999999999999


Q ss_pred             ccchhhh-ccCcccCCCC
Q 010774          484 DLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       484 ~~~~~~~-~dgw~~TGD~  500 (501)
                      +.|++.| .+|||+|||.
T Consensus       448 ~~t~~~f~~~g~~~TGDl  465 (979)
T 3tsy_A          448 AATAETIDKDGWLHTGDI  465 (979)
T ss_dssp             HHHHHHBCTTSCEEEEEE
T ss_pred             hhhhhhccCCCcEEcCCE
Confidence            9999999 7999999995

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=3.7e-57  Score=467.25  Aligned_cols=369  Identities=18%  Similarity=0.195  Sum_probs=305.0

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      +|+.+.|+++++++|+++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~   71 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC   71 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            47899999999999999999875   3      58999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeHH
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (501)
                      +++|++++|++|.++.+++.++++.++++++|++.......        .. ..++...                  .+.
T Consensus        72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~~------------------~~~  124 (512)
T 3fce_A           72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSED------------------NLK  124 (512)
T ss_dssp             HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEETH------------------HHH
T ss_pred             HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceechh------------------hhh
Confidence            99999999999999999999999999999999976432111        00 1111110                  111


Q ss_pred             HHHhcC--CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHH
Q 010774          203 EFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (501)
Q Consensus       203 ~~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (501)
                      ++....  ..........++++++|+|||||||.||||+++|.++.+.+......+     .+..+|++++.+|++|.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  199 (512)
T 3fce_A          125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS  199 (512)
T ss_dssp             HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred             hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence            222111  112223345678999999999999999999999999999998877666     7889999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010774          281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (501)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (501)
                      +..++.+++.|+++++.+.    ++..+++.++++++|++.++|++++.++..                           
T Consensus       200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------------------  252 (512)
T 3fce_A          200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLME---------------------------  252 (512)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTS---------------------------
T ss_pred             HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhh---------------------------
Confidence            8888999999999999874    899999999999999999999999887641                           


Q ss_pred             ccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCC----
Q 010774          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV----  431 (501)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~----  431 (501)
                                ......++        +++|.+++||+++++++.+++.+.+ ++.+++.||+||++++++......    
T Consensus       253 ----------~~~~~~~~--------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  314 (512)
T 3fce_A          253 ----------ASFSESML--------PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD  314 (512)
T ss_dssp             ----------TTCSTTTS--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred             ----------ccccchhC--------ccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence                      11111112        3899999999999999999999998 889999999999998776544322    


Q ss_pred             CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhc----cCcccCCCC
Q 010774          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV----DGWFHTEVH  500 (501)
Q Consensus       432 ~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~----dgw~~TGD~  500 (501)
                      .....++|+|+++++++|+| +++.+++.|  +.|||+|+||+++.|||++|+.|++.|.    +|||+|||.
T Consensus       315 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDl  384 (512)
T 3fce_A          315 QYKSLPVGYCKSDCRLLIMK-EDGTIAPDG--EKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDA  384 (512)
T ss_dssp             HCSSCCCEEECTTCEEEEEC-SSSCBCCTT--SCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEE
T ss_pred             ccCCCccccccCCcEEEEEC-CCCCCCCCC--CeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCce
Confidence            12347899999999999999 999888776  8999999999999999999999999882    569999995

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=6.8e-56  Score=465.77  Aligned_cols=363  Identities=17%  Similarity=0.148  Sum_probs=301.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010774           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (501)
Q Consensus        41 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  120 (501)
                      ...++.+.|.++++++|+++|+++.   +      +++||+||.++++++|++|++.|+++||+|+|+++|++++++++|
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l   95 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL   95 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3578999999999999999999875   3      589999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEee
Q 010774          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (501)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (501)
                      ||+++|++++|++|.++.+++.++++.++++++++.........        ....+ .+.                   
T Consensus        96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~-~~~-------------------  147 (620)
T 4dg8_A           96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV-PVR-------------------  147 (620)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE-EGG-------------------
T ss_pred             HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee-eec-------------------
Confidence            99999999999999999999999999999999997665432211        01111 110                   


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHH
Q 010774          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (501)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (501)
                        ... ............++++++|+|||||||.||||+++|+++.+.+.. ...+     .+..+|++++.+|++|..+
T Consensus       148 --~~~-~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~  218 (620)
T 4dg8_A          148 --HLP-AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA  218 (620)
T ss_dssp             --GCC-CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred             --cCC-cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence              000 001112223346799999999999999999999999999887765 3333     6789999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEec---CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          281 QIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      +..++.+|+.|+++++.+   .++..+++.++++++|+++++|++++.+++..                           
T Consensus       219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---------------------------  271 (620)
T 4dg8_A          219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---------------------------  271 (620)
T ss_dssp             HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---------------------------
T ss_pred             HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---------------------------
Confidence            888999999999999864   28999999999999999999999999887520                           


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCC---Cc
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---FN  433 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~---~~  433 (501)
                               +    .++        ++||.+++||++++++..+++.+.+ +++++|.||+||++.+++......   ..
T Consensus       272 ---------~----~~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  330 (620)
T 4dg8_A          272 ---------P----DCL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE  330 (620)
T ss_dssp             ---------G----GGG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGS
T ss_pred             ---------h----hhC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCC
Confidence                     0    011        3899999999999999888887765 889999999999998766543322   23


Q ss_pred             ccCcccccccCeEEEEeecCCCCc-cCCCCCCCceEEEecCCccccccCCcccchhhhcc--------CcccCCCC
Q 010774          434 MIGTVGVPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD--------GWFHTEVH  500 (501)
Q Consensus       434 ~~~s~G~p~p~~~i~I~d~~~~~~-~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~d--------gw~~TGD~  500 (501)
                      ...++|+|++|++++|+| +++.+ ++.|  ++|||||+|++++.||||+|+.|++.|.+        +||+|||.
T Consensus       331 ~~~~iG~p~~~~~~~i~d-~~~~~~~~~g--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl  403 (620)
T 4dg8_A          331 DDIPIGKAIAGTAVLLLD-EHGQEIAEPD--RAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDR  403 (620)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSCBCCSSS--CCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEE
T ss_pred             CCCCceecccCcEEEEEC-ccCCCCCCCC--CceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCE
Confidence            457899999999999999 88876 4554  89999999999999999999999999932        79999995

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2.5e-56  Score=460.78  Aligned_cols=368  Identities=18%  Similarity=0.241  Sum_probs=309.4

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      +|+.+.|+++++++|+++|+++.    +     +++||+||.++++++|++|.+. |.++||+|+++++|++++++++||
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA   71 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG   71 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence            37899999999999999999874    3     6899999999999999999885 888999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|++|.++.+++.++++.++++++|++.........      .                      ......+
T Consensus        72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------~----------------------~~~~~~~  123 (511)
T 3e7w_A           72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------Q----------------------QIQTVSA  123 (511)
T ss_dssp             HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------C----------------------SSCEEEH
T ss_pred             HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------c----------------------ccceecH
Confidence            99999999999999999999999999999999997653321100      0                      0113345


Q ss_pred             HHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHH
Q 010774          202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (501)
Q Consensus       202 ~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  280 (501)
                      +++.... ..........++++++|+|||||||.||||++||.++.+.+..+...+     .+..+|++++.+|++|.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  198 (511)
T 3e7w_A          124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS  198 (511)
T ss_dssp             HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred             hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence            5555433 112222334678999999999999999999999999999998877666     7889999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010774          281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (501)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (501)
                      +..++.+++.|+++++.+.    ++..+++.++++++|+++++|++++.+++.                           
T Consensus       199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---------------------------  251 (511)
T 3e7w_A          199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD---------------------------  251 (511)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTS---------------------------
T ss_pred             HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhc---------------------------
Confidence            8888999999999998764    899999999999999999999999988741                           


Q ss_pred             ccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCC----
Q 010774          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV----  431 (501)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~----  431 (501)
                                +.....++        +++|.+++||+++++++.+++.+.+ ++.+++.||+||++++++......    
T Consensus       252 ----------~~~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  313 (511)
T 3e7w_A          252 ----------PGFSQDLL--------PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS  313 (511)
T ss_dssp             ----------TTCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred             ----------cccccccC--------CcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence                      11111112        3899999999999999999999998 889999999999988766543222    


Q ss_pred             CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh--ccC--cccCCCC
Q 010774          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDG--WFHTEVH  500 (501)
Q Consensus       432 ~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~dg--w~~TGD~  500 (501)
                      .....++|+|+|+++++|+| +++++++.|  +.|||+|+|++++.|||++|+.|++.|  .+|  ||+|||.
T Consensus       314 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDl  383 (511)
T 3e7w_A          314 RSESLPVGFAKPDMNIFIMD-EEGQPLPEG--EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDA  383 (511)
T ss_dssp             TCSSCCCBEECTTCEEEEEC-TTSCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEE
T ss_pred             cCCcCCCcceeCCCEEEEEC-CCCCCCCCC--CceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCe
Confidence            22346799999999999999 889888776  999999999999999999999999998  344  8999995

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=6.3e-56  Score=467.59  Aligned_cols=384  Identities=16%  Similarity=0.208  Sum_probs=317.3

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.++|.++++  |+++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        26 ~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA   94 (617)
T 3rg2_A           26 DLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFA   94 (617)
T ss_dssp             CCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             cCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            4789999999988  999999875   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChh----hhhhcCccCCCCccEEEEecCCChhhHHHhhhcCce
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (501)
                      |+++|++++|++|.++.+++.++++.+++++++++.....    ............+..+........            
T Consensus        95 ~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  162 (617)
T 3rg2_A           95 LLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE------------  162 (617)
T ss_dssp             HHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST------------
T ss_pred             HHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc------------
Confidence            9999999999999999999999999999999999987541    111111111233444444433221            


Q ss_pred             EeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHH
Q 010774          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (501)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~  277 (501)
                       ..+.+............+..++++++|+|||||||.||||+++|+++.+.+......+     .+..+|++++.+|++|
T Consensus       163 -~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~  236 (617)
T 3rg2_A          163 -HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAAH  236 (617)
T ss_dssp             -TBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred             -cchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccchh
Confidence             1234444433223334455678999999999999999999999999999998877766     7889999999999999


Q ss_pred             HHHHHH--HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       278 ~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      .+++..  ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++........                  
T Consensus       237 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------  298 (617)
T 3rg2_A          237 NYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR------------------  298 (617)
T ss_dssp             HHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT------------------
T ss_pred             hhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc------------------
Confidence            998874  7889999999999875 8999999999999999999999999988754221100                  


Q ss_pred             hhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcc
Q 010774          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (501)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (501)
                                       .++        ++||.+++||+++++++.+++.+.+++++++.||+||++..++.........
T Consensus       299 -----------------~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~  353 (617)
T 3rg2_A          299 -----------------AQL--------ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKI  353 (617)
T ss_dssp             -----------------TTT--------TTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHH
T ss_pred             -----------------ccC--------CCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccccc
Confidence                             011        3899999999999999999999999999999999999886555433222233


Q ss_pred             cCcccccc-cCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          435 IGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       435 ~~s~G~p~-p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      ..++|+|+ ++++++|+| +++++++.|  ++|||||+|++++.|||++|+.|++.| .+|||+|||.
T Consensus       354 ~~~~G~p~~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl  418 (617)
T 3rg2_A          354 IHTQGYPMCPDDEVWVAD-AEGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDL  418 (617)
T ss_dssp             HHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEE
T ss_pred             ccCCCccCCCCceEEEEC-CCCCCCCCC--CceEEEecCccccchhcCChhhhhhccCCCCceecCce
Confidence            46789997 889999999 999888877  999999999999999999999999999 8999999995

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=4.4e-56  Score=460.42  Aligned_cols=369  Identities=16%  Similarity=0.138  Sum_probs=304.4

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      +.++.+.|+++++++|+++|+.+.    +     +++||+||.++++++|++|.++|+++||+|+++++|++++++++||
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA   73 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA   73 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999875    3     5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|++|.++.+++.++++.++++++|++.+....+.        .. .                     ...+
T Consensus        74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~  123 (521)
T 3l8c_A           74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL  123 (521)
T ss_dssp             HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred             HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence            9999999999999999999999999999999999876543221        00 1                     1122


Q ss_pred             HHHHh---cCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHH
Q 010774          202 EEFLQ---LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (501)
Q Consensus       202 ~~~~~---~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (501)
                      .++..   ............++++++|+|||||||.||||++||+++++....+....   ......++++++..|++|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~  200 (521)
T 3l8c_A          124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD  200 (521)
T ss_dssp             HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred             hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence            22221   11112223445679999999999999999999999999998877654431   1267788999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          279 YDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      .++..++.++..|+++++.+.    ++..+++.+.++++|++.++|+++..++..                         
T Consensus       201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------------  255 (521)
T 3l8c_A          201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS-------------------------  255 (521)
T ss_dssp             GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTS-------------------------
T ss_pred             HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhh-------------------------
Confidence            888788899999999998764    889999999999999999999999887641                         


Q ss_pred             hhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCC--
Q 010774          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV--  431 (501)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~--  431 (501)
                                  ......++        +++|.+++||+++++++.+++.+.+ ++.+++.||+||++++++......  
T Consensus       256 ------------~~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~  315 (521)
T 3l8c_A          256 ------------DDFCQAKM--------PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM  315 (521)
T ss_dssp             ------------TTCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred             ------------hccccccC--------ccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence                        11111112        3899999999999999999999988 899999999999988766543222  


Q ss_pred             --CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh----ccCcccCCCC
Q 010774          432 --FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI----VDGWFHTEVH  500 (501)
Q Consensus       432 --~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~----~dgw~~TGD~  500 (501)
                        ....+++|+|+|+++++|+| +++.+++.|  +.|||+|+||+++.|||++|+.|++.|    .+|||+|||.
T Consensus       316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDl  387 (521)
T 3l8c_A          316 VDNYTRLPIGYPKPDSPTYIID-EDGKELSSG--EQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDI  387 (521)
T ss_dssp             HHHCSSCEEEEECTTSCEEEEC-TTSCBCCTT--CCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEE
T ss_pred             ccCCCccccccccCCCEEEEEC-CCcCCCCCC--CceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCE
Confidence              12347899999999999999 999888776  899999999999999999999999988    3679999995

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=3.6e-55  Score=456.37  Aligned_cols=364  Identities=19%  Similarity=0.281  Sum_probs=299.0

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.++|.++++++|+++|+++.    +     +.+||+||.++++++|++|.++|+++||+|+++++|++++++++||
T Consensus        38 ~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  108 (563)
T 1amu_A           38 DKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA  108 (563)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999864    3     5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|++|.++.+++.++++.++++++|++.+....+....     ....+..+.....                
T Consensus       109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------  167 (563)
T 1amu_A          109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDTI----------------  167 (563)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCSTT----------------
T ss_pred             HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchhh----------------
Confidence            9999999999999999999999999999999999876554432211     1112222221100                


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                          .............++++++|+|||||||.||||++||+++.+.+..+...+     ++..+|++++.+|++|..++
T Consensus       168 ----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~  238 (563)
T 1amu_A          168 ----KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDASV  238 (563)
T ss_dssp             ----TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHHH
T ss_pred             ----ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHHH
Confidence                000111112334578999999999999999999999999998887766655     77899999999999999998


Q ss_pred             HHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      ..++.+++.|+++++.+.    ++..+++.++++++|+++++|+++..+...                            
T Consensus       239 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----------------------------  290 (563)
T 1amu_A          239 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE----------------------------  290 (563)
T ss_dssp             HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT----------------------------
T ss_pred             HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc----------------------------
Confidence            878899999999998763    889999999999999999999998765320                            


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC--Cccc
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV--FNMI  435 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~--~~~~  435 (501)
                                     ++        +++|.+++||+++++++.++|.+  .+.+++.||+||++.+++......  ....
T Consensus       291 ---------------~~--------~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  345 (563)
T 1amu_A          291 ---------------RI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHS  345 (563)
T ss_dssp             ---------------TC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSS
T ss_pred             ---------------cc--------ccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCC
Confidence                           01        38999999999999999999987  478999999999988766543322  2345


Q ss_pred             CcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhc-------cCcccCCCC
Q 010774          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------DGWFHTEVH  500 (501)
Q Consensus       436 ~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-------dgw~~TGD~  500 (501)
                      .++|+|+|+++++|+| +++++++.|  +.|||||+|++++.|||++|+.|++.|.       +|||+|||.
T Consensus       346 ~~vG~p~~~~~v~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDl  414 (563)
T 1amu_A          346 VPIGAPIQNTQIYIVD-ENLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ  414 (563)
T ss_dssp             CCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred             CcccceeCCCEEEEEC-CCcCCCCCC--CcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCE
Confidence            7899999999999999 888887776  8999999999999999999999999883       359999995

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=1.3e-55  Score=464.11  Aligned_cols=385  Identities=18%  Similarity=0.216  Sum_probs=308.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ....|+.++|.++++.+|+++|+++.   ++  +..+++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus         8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~   82 (590)
T 3kxw_A            8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF   82 (590)
T ss_dssp             HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence            34578999999999999999999986   42  22378999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCC---CHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCc
Q 010774          120 EACNSQAITYVPLYDTL---GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (501)
                      |||+++|++++|++|.+   +.+++.++++.+++++++++.+....+.............+.                  
T Consensus        83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~------------------  144 (590)
T 3kxw_A           83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP------------------  144 (590)
T ss_dssp             HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEE------------------
T ss_pred             HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccc------------------
Confidence            99999999999999988   457899999999999999987665544322111111111111                  


Q ss_pred             eEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChH
Q 010774          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (501)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (501)
                       +...+++..............++++++|+|||||||.||||++||+++++.+......+     ++..+|++++.+|++
T Consensus       145 -~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~  218 (590)
T 3kxw_A          145 -AIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH  218 (590)
T ss_dssp             -EEEGGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             -eeechhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence             11111111111112233455678999999999999999999999999999998877766     788999999999999


Q ss_pred             HHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 010774          277 HIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (501)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (501)
                      |.+|+.. ++.+++.|+++++.+.     ++..+++.++++++|++.++|.+++.+++.+..                  
T Consensus       219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------------  280 (590)
T 3kxw_A          219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIRE------------------  280 (590)
T ss_dssp             SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCG------------------
T ss_pred             cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhh------------------
Confidence            9999986 8899999999999764     789999999999999999999999988763211                  


Q ss_pred             HHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC------CCeeeeecccccCcce
Q 010774          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGLTESCSGC  424 (501)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~------~~l~~~yG~tE~~~~~  424 (501)
                                      ......++        ++||.+++||+++++++.++|.+.++      ..+++.||+||+++++
T Consensus       281 ----------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~  336 (590)
T 3kxw_A          281 ----------------EKKEGLDL--------SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV  336 (590)
T ss_dssp             ----------------GGGTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred             ----------------hhccCCCc--------hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence                            11111222        38999999999999999999999873      4699999999999887


Q ss_pred             ecccCC--------------------------CCcccCcccccccCeEEEEeecCC-CCccCCCCCCCceEEEecCCccc
Q 010774          425 FTSLAD--------------------------VFNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFS  477 (501)
Q Consensus       425 ~~~~~~--------------------------~~~~~~s~G~p~p~~~i~I~d~~~-~~~~~~~~~~~Gei~v~g~~v~~  477 (501)
                      +.....                          .....+++|+|+++  ++|+| ++ +.+++.|  ++|||+|+||+++.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~~~~~~~g--~~GEl~v~g~~v~~  411 (590)
T 3kxw_A          337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDTLIPCDFD--QVGEIWVQSNSVAK  411 (590)
T ss_dssp             EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTTCCBCCTT--BCEEEEEESTTSCC
T ss_pred             ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCCCcCCCCC--CEEEEEEeCCcccc
Confidence            754321                          11234789999998  88899 65 6666655  89999999999999


Q ss_pred             cccCCcccchhhhcc-------C--cccCCCC
Q 010774          478 GYYKRPDLTEEVIVD-------G--WFHTEVH  500 (501)
Q Consensus       478 gY~~~~~~~~~~~~d-------g--w~~TGD~  500 (501)
                      |||++|+.|++.|.+       |  ||+|||.
T Consensus       412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDl  443 (590)
T 3kxw_A          412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDL  443 (590)
T ss_dssp             CBTTCHHHHHHHHCBCCTTC---CCBEEEEEE
T ss_pred             cccCChhHHHHHHhccccCCCCCCcEEecCcE
Confidence            999999999999842       5  9999995

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1e-54  Score=454.19  Aligned_cols=384  Identities=17%  Similarity=0.151  Sum_probs=304.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCC----CCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDG----KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW  115 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~----~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~  115 (501)
                      .+..|+.++|+++++++|+++|+++.   ++    .....+++||+||.++++++|++|.+.|+ +||+|+++++|++++
T Consensus        17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~   92 (562)
T 3ite_A           17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA   92 (562)
T ss_dssp             -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred             cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence            45678999999999999999999876   32    12234789999999999999999999999 799999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcC
Q 010774          116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (501)
Q Consensus       116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (501)
                      ++++|||+++|++++|++|.++.+++.++++.++++++|++++......      ......++....             
T Consensus        93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~-------------  153 (562)
T 3ite_A           93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN-------------  153 (562)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC-------------
T ss_pred             HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc-------------
Confidence            9999999999999999999999999999999999999999876544321      011112222111             


Q ss_pred             ceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeee---eccccCCCCcEEEEe
Q 010774          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV---VTGKVCSEEDTYFSF  272 (501)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~---~~~~~~~~~d~~l~~  272 (501)
                         ..+.+.+.............++++++|+|||||||.||||+++|+++.+....+...+.   .....+...+++++.
T Consensus       154 ---~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (562)
T 3ite_A          154 ---QSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCL  230 (562)
T ss_dssp             ---HHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECC
T ss_pred             ---hhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEe
Confidence               11222333222222233445788899999999999999999999999988766543221   112256788999999


Q ss_pred             cChHHHHHHHHHHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 010774          273 LPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (501)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (501)
                      .|++|..++..++.++..|+++++.+.  .+..+++.++++++|+++++|++++.+..                      
T Consensus       231 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~----------------------  288 (562)
T 3ite_A          231 ASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----------------------  288 (562)
T ss_dssp             SCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----------------------
T ss_pred             cCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----------------------
Confidence            999998888778889999999998764  46788899999999999999998876531                      


Q ss_pred             HHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCC
Q 010774          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD  430 (501)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~  430 (501)
                                     .+    .++        ++||.+++||+++++++.++|++.+++.+++.||+||++.+++.....
T Consensus       289 ---------------~~----~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~  341 (562)
T 3ite_A          289 ---------------VP----EDA--------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRIL  341 (562)
T ss_dssp             ---------------CG----GGS--------TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECC
T ss_pred             ---------------Cc----ccc--------CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeec
Confidence                           00    011        389999999999999999999998899999999999999877766555


Q ss_pred             CCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccC--cccCCCC
Q 010774          431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG--WFHTEVH  500 (501)
Q Consensus       431 ~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dg--w~~TGD~  500 (501)
                      .....+++|+|+++++++|+|.+++.+++.|  +.|||+|+|++++.|||++|+.++..+.+|  ||+|||.
T Consensus       342 ~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDl  411 (562)
T 3ite_A          342 PDSDTRCIGHPLGDSVAHVLAPGSNEHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDI  411 (562)
T ss_dssp             TTSCTTEEEEECTTCEEEEECTTSSCBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEE
T ss_pred             CCCCCccccccCCCCeEEEEeCCCCCCCCCC--CceEEEEeccccchhhCCCccccccccCCCCEEEecCCE
Confidence            5555689999999999999993345556555  899999999999999999999988776666  9999995

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.3e-54  Score=447.24  Aligned_cols=377  Identities=21%  Similarity=0.284  Sum_probs=295.7

Q ss_pred             CHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010774           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (501)
Q Consensus        44 tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~  123 (501)
                      ||.++|.++++++|+++|+++.   +      +++||+||.++++++|++|++.   +||+|+++++|++++++++|||+
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~   69 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW   69 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence            5778999999999999999865   3      4899999999999999999987   89999999999999999999999


Q ss_pred             hcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe-eHH
Q 010774          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF-SWE  202 (501)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~  202 (501)
                      ++|++++|+++.++.+++.++++.++++++|++.+...........  ..+..+...........   ........ ..+
T Consensus        70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  144 (501)
T 3ipl_A           70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL--DDIEFAGRDITTNGLLD---NTMGIQYDTSNE  144 (501)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET--TC------------------------------
T ss_pred             HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc--ccceeeeeecccccccc---cccccccccchh
Confidence            9999999999999999999999999999999998765443221110  11111110000000000   00000000 001


Q ss_pred             HHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          203 EFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       203 ~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                      ...... ..........++++++|+|||||||.||||+++|+++.+.+..+...+     ++..+|++++.+|++|.+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  219 (501)
T 3ipl_A          145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL  219 (501)
T ss_dssp             -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred             hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence            111111 001122345679999999999999999999999999999988877666     78899999999999999999


Q ss_pred             HHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCC
Q 010774          282 IIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM  360 (501)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (501)
                      ..++.+++.|+++++.+. ++..+++.++++++|+++++|++++.+++....                            
T Consensus       220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------  271 (501)
T 3ipl_A          220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------------------------  271 (501)
T ss_dssp             HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred             HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence            888899999999999875 999999999999999999999999998763100                            


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCC-CCcccCccc
Q 010774          361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD-VFNMIGTVG  439 (501)
Q Consensus       361 ~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~-~~~~~~s~G  439 (501)
                               .           ..+||.+++||+++++++.+++.+ +++++++.||+||+++.++..... ....++++|
T Consensus       272 ---------~-----------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G  330 (501)
T 3ipl_A          272 ---------E-----------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG  330 (501)
T ss_dssp             ---------S-----------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred             ---------C-----------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence                     0           026999999999999999999988 499999999999998765543332 234558999


Q ss_pred             ccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          440 VPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       440 ~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +|+++++++|+| ++       .++.|||+|+|++++.|||++++.+.. |.+|||+|||.
T Consensus       331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl  382 (501)
T 3ipl_A          331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDI  382 (501)
T ss_dssp             EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEE
T ss_pred             CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCE
Confidence            999999999999 54       226899999999999999999999988 88999999995

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=6.9e-55  Score=448.80  Aligned_cols=366  Identities=24%  Similarity=0.331  Sum_probs=294.3

Q ss_pred             CCCCCHHHHHHHHHHhCCC-CcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~-~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~  118 (501)
                      ..+.++.+.|.++++++|+ ++|+++.   +      +++||+||.++++++|++|.     .||+|+++++|+++++++
T Consensus        19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~   84 (505)
T 3nyq_A           19 SHMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA   84 (505)
T ss_dssp             -----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred             cccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence            4567899999999999987 9999875   3      68999999999999998774     489999999999999999


Q ss_pred             HHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceE
Q 010774          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (501)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  198 (501)
                      +|||+++|++++|++|.++.+++.++++.++++++|++.+....      .....+.. +.+...               
T Consensus        85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~------~~~~~~~~-~~~~~~---------------  142 (505)
T 3nyq_A           85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP------PALGALER-VDVDVR---------------  142 (505)
T ss_dssp             HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC------GGGTTSEE-EECCTT---------------
T ss_pred             HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc------hhhccccc-cccccc---------------
Confidence            99999999999999999999999999999999999998752110      00011111 111110               


Q ss_pred             eeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHH
Q 010774          199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (501)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (501)
                               .....+.....++++++|+|||||||.||||+++|+++.+.+..+...+     .+..+|++++.+|++|.
T Consensus       143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  208 (505)
T 3nyq_A          143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHV  208 (505)
T ss_dssp             ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSH
T ss_pred             ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHH
Confidence                     0111223345678999999999999999999999999999998877766     78899999999999999


Q ss_pred             HHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010774          279 YDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (501)
Q Consensus       279 ~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (501)
                      .|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++.+..                        
T Consensus       209 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~------------------------  263 (505)
T 3nyq_A          209 HGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPA------------------------  263 (505)
T ss_dssp             HHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGG------------------------
T ss_pred             HHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhc------------------------
Confidence            99875 8899999999998875 899999999 88999999999999998764211                        


Q ss_pred             ccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccC
Q 010774          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIG  436 (501)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~  436 (501)
                               .+ ....+++        ++|.+++||+++++++.+++.+.+++++++.||+||++.+++..... ....+
T Consensus       264 ---------~~-~~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~  324 (505)
T 3nyq_A          264 ---------DP-ELAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADG-EPRAG  324 (505)
T ss_dssp             ---------CH-HHHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-CCCTT
T ss_pred             ---------Cc-hhhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCC-CCCCC
Confidence                     11 1222333        89999999999999999999999999999999999998776654433 34458


Q ss_pred             cccccccCeEEEEeecCCCCccCC-CCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          437 TVGVPMTTVEARLESVPEMGYDAL-SSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       437 s~G~p~p~~~i~I~d~~~~~~~~~-~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      ++|+|++|++++|+| +++++++. ..+++|||+|+|++++.|||++|+.|++.| .||||+|||.
T Consensus       325 ~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl  389 (505)
T 3nyq_A          325 TVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDM  389 (505)
T ss_dssp             CCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEE
T ss_pred             CcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCe
Confidence            999999999999999 88887775 334899999999999999999999999999 7999999995

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=1.3e-51  Score=467.73  Aligned_cols=368  Identities=17%  Similarity=0.224  Sum_probs=306.1

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ..++.+.|.++++++|+++|+++.   +      +++||+||.++++++|++|++.|+++||+|+|+++|++++++++||
T Consensus       463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la  533 (1304)
T 2vsq_A          463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG  533 (1304)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999875   3      4899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|++|.++.+++.++++.+++++++++.+....+...     ......+.+.+..                 
T Consensus       534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~-----------------  591 (1304)
T 2vsq_A          534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQT-----------------  591 (1304)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGG-----------------
T ss_pred             HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEecccc-----------------
Confidence            999999999999999999999999999999999988655432111     1112233332110                 


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHH
Q 010774          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (501)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~  281 (501)
                       . .. ...........++++++|+|||||||.||||+++|+++.+. ......+     .+..+|+++...|++|..+.
T Consensus       592 -~-~~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~~  662 (1304)
T 2vsq_A          592 -R-FE-EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAFT  662 (1304)
T ss_dssp             -G-GG-SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHHH
T ss_pred             -c-cc-cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHHH
Confidence             0 00 01111223456789999999999999999999999999876 3444444     77899999999999998888


Q ss_pred             HHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      ..++.+|+.|+++++.+.    ++..+++.++++++|+++++|++++.+.+..                           
T Consensus       663 ~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---------------------------  715 (1304)
T 2vsq_A          663 FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---------------------------  715 (1304)
T ss_dssp             HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---------------------------
T ss_pred             HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---------------------------
Confidence            778999999999999864    8999999999999999999999999886520                           


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh-CCCeeeeecccccCcceecccCCC---Cc
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---FN  433 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~---~~  433 (501)
                               .    ..++        +||.+++|||++++++.++|.+.+ +++++|.||+||++++++......   ..
T Consensus       716 ---------~----~~~~--------~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  774 (1304)
T 2vsq_A          716 ---------E----DWMK--------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI  774 (1304)
T ss_dssp             ---------S----HHHH--------TCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSC
T ss_pred             ---------h----hcCC--------CccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccC
Confidence                     0    0122        899999999999999999998887 478999999999998776554322   22


Q ss_pred             ccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-c------cCcccCCCC
Q 010774          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V------DGWFHTEVH  500 (501)
Q Consensus       434 ~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~------dgw~~TGD~  500 (501)
                      ...++|+|++|++++|+| ++++++|.|  ++|||||+|+++++||+|+|+.|++.| .      ++||+|||-
T Consensus       775 ~~~~iG~p~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl  845 (1304)
T 2vsq_A          775 SSLPIGKPISNASVYILN-EQSQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDL  845 (1304)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSCBCCTT--CCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEE
T ss_pred             CCCCCceeeCCCEEEEEC-CCcCCCCCC--CceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCe
Confidence            346899999999999999 989888877  899999999999999999999999998 2      349999994

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.97  E-value=9.1e-32  Score=263.71  Aligned_cols=200  Identities=17%  Similarity=0.176  Sum_probs=167.6

Q ss_pred             CCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEec
Q 010774          219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR  298 (501)
Q Consensus       219 ~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~  298 (501)
                      .+++++|+|||||||.||||++||+++++.+..+...+     ++..+|++++.+|++|.+|+..++.++..|+++++..
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~  110 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE  110 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence            36789999999999999999999999999998877776     8889999999999999999988889999999998876


Q ss_pred             CCHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHH
Q 010774          299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR  378 (501)
Q Consensus       299 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  378 (501)
                      .. ...++.++++++|+++++|++++.+++...                                      ...++    
T Consensus       111 ~~-~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l----  147 (358)
T 4gs5_A          111 PT-ANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV----  147 (358)
T ss_dssp             CC-SCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred             cc-ccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence            42 234667899999999999999999876210                                      11122    


Q ss_pred             HHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEeecCCCCcc
Q 010774          379 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD  458 (501)
Q Consensus       379 ~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~  458 (501)
                          ++||.+++||+++++++.+++++. ++++++.||+||+++.++....+... .+++|.+.||+++.+.+       
T Consensus       148 ----~~lr~v~~gG~~l~~~~~~~~~~~-~~~~~~~YG~TEt~~~~~~~~~~~~~-~g~~~~~~pgv~~~~~~-------  214 (358)
T 4gs5_A          148 ----DRLGKVLLGGAPVNHALAMQISDL-AMPVYQSYGMTETVSHVALKALNGPE-ASELYVFLPGIQYGVDE-------  214 (358)
T ss_dssp             ----GGGCSEEECSSCCCHHHHHHHHTC-SSCEEEEEECGGGSSEEEEEECSSTT-CCSCEEECTTCEEEECT-------
T ss_pred             ----CcceEEEEcccCCCchheeccccc-CceEEeccccccccceeecccccccc-cceeeccCCCeEEEecC-------
Confidence                389999999999999999999874 99999999999999888776655444 48899999999888744       


Q ss_pred             CCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          459 ALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       459 ~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                            .|||+++|+.+               .+|||+|||.
T Consensus       215 ------~Gel~~~g~~~---------------~~g~~~TGDl  235 (358)
T 4gs5_A          215 ------RGCLHISGAVT---------------NGQTVQTNDL  235 (358)
T ss_dssp             ------TSEEEEESGGG---------------TTCCEEEEEE
T ss_pred             ------cCceEEecccc---------------cCcceecCCc
Confidence                  59999998643               3689999984

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.97  E-value=2.5e-30  Score=261.21  Aligned_cols=223  Identities=13%  Similarity=0.059  Sum_probs=175.1

Q ss_pred             CCCC-CCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHHHHH-HHHHHHhcCcE
Q 010774          216 PKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCS  293 (501)
Q Consensus       216 ~~~~-~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~-~~~~~l~~G~~  293 (501)
                      ...+ +++++|+|||||||.||+|+++|.++.+....+...+  ...++..+|++++..|+.|..+.. ..+.++..|++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCL--YMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHH--HHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHH--HHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            3455 8899999999999999999999999987766543221  112678899999999986555554 57888999999


Q ss_pred             EEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhccCCCCCCcchhHHHH
Q 010774          294 IGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL  372 (501)
Q Consensus       294 ~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (501)
                      +++.+. ++..+++.++++++|+++++|+++..+++.+........                                  
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~----------------------------------  204 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPR----------------------------------  204 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTT----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcc----------------------------------
Confidence            998764 999999999999999999999999999875433211100                                  


Q ss_pred             HHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcccCcccccccCeEEEEeec
Q 010774          373 VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV  452 (501)
Q Consensus       373 ~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~p~~~i~I~d~  452 (501)
                       +        +++|.+++||+++++++.+++++.||+.+++.||+||+++.++.....  .. ...|.|.++++++|+|.
T Consensus       205 -~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~-~g~~~~~~~~~v~i~d~  272 (436)
T 3qov_A          205 -E--------TTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQ-NGMHFWEDCYLVEIIDP  272 (436)
T ss_dssp             -S--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TC-SSEEECTTTEEEEEECT
T ss_pred             -c--------CCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CC-CeeEEccCceEEEEEEC
Confidence             1        389999999999999999999999999999999999996553322211  11 33677788999999995


Q ss_pred             CCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      +++++++.|  +.|||+|+|.            +.+.+.++||+|||.
T Consensus       273 ~~g~~~~~g--~~Gel~v~~~------------~~~~~~~~~y~TGDl  306 (436)
T 3qov_A          273 ETGEPVPEG--EIGELVLTTL------------DREMMPLIRYRTRDL  306 (436)
T ss_dssp             TTCSBCSTT--CCEEEEEEES------------SCCSSCCCSEEEEEE
T ss_pred             CCCCCCCCC--CceEEEEecc------------CcCCceEEEEEcCCE
Confidence            567777766  8999999983            234456899999995

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=2.9e-30  Score=254.94  Aligned_cols=227  Identities=15%  Similarity=0.137  Sum_probs=179.8

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCcEEE
Q 010774          217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSIG  295 (501)
Q Consensus       217 ~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~l~~G~~~~  295 (501)
                      ..++++++|+|||||||.||+|.++|.++.....++...+  ...++..+|++++.+|+ +|..++...+.++..|+.++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGY--QHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTT--TTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhH--HhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence            4678889999999999999999999999999887543221  12267889999999999 99999988777799999444


Q ss_pred             EecCCHH-----------------------HHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 010774          296 FWRGDVR-----------------------YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (501)
Q Consensus       296 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (501)
                      ....++.                       .+++.++++++|+++++|+++..|++.                       
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~-----------------------  222 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKR-----------------------  222 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTC-----------------------
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhh-----------------------
Confidence            3344666                       788899999999999999999998752                       


Q ss_pred             hhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHH-Hhh-CCCeeeeecccccCcceecccCC
Q 010774          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR-VTS-GAPLTQGYGLTESCSGCFTSLAD  430 (501)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~-~~~-~~~l~~~yG~tE~~~~~~~~~~~  430 (501)
                                    +.....+++        ++|.+++||+++++++.+++. +.| ++.+++.||+||+++++...+. 
T Consensus       223 --------------~~~~~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-  279 (369)
T 3hgu_A          223 --------------PEVVLQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-  279 (369)
T ss_dssp             --------------HHHHHHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred             --------------hhhhccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence                          222334444        899999999999999999999 888 8999999999999876532211 


Q ss_pred             CCcccCccccc------ccCeEEEEeecC-CCCccCCCCCCCceEEEecC---CccccccCCcccchhhhccCcccCCC
Q 010774          431 VFNMIGTVGVP------MTTVEARLESVP-EMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVIVDGWFHTEV  499 (501)
Q Consensus       431 ~~~~~~s~G~p------~p~~~i~I~d~~-~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~~dgw~~TGD  499 (501)
                           .++|+|      +|+++++|+| + ++++++.|  +.|||+|++.   ..+.+|...+..+.....+||+.+|+
T Consensus       280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g~~vp~G--~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~  350 (369)
T 3hgu_A          280 -----TSESQQVIYDSFSPFITYDVVD-SITAQTVEYG--ERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRL  350 (369)
T ss_dssp             -----CTTCSSCEEECCTTTEEEEEEC-TTTCSBCCTT--CEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCEE
T ss_pred             -----ccCCCcccccCCCCCeEEEEEC-CCCCcCCCCC--CceEEEEEEcCcccccccccCCceEEEecCCCCCcCccc
Confidence                 248999      9999999999 6 78877766  9999999983   34778887766666555789988875

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.97  E-value=9.5e-30  Score=257.04  Aligned_cols=237  Identities=16%  Similarity=0.073  Sum_probs=179.4

Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecCh-HHH
Q 010774          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHI  278 (501)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~~~  278 (501)
                      ..+++....  +.......++++++++|||||||.||+|.++|.++......+...+  ...++..+|++++.+|+ +|.
T Consensus        72 ~~~~l~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~  147 (437)
T 2y27_A           72 TKGDLRDSY--PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSI--RAAGARRGDKVHVSYGYGLFT  147 (437)
T ss_dssp             CHHHHHHTT--TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHH--HHTTCCTTCEEEECSCCSSSH
T ss_pred             CHHHHHhcC--CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHH--HHcCCCCCCEEEEcccccccc
Confidence            445554433  1123344568899999999999999999999999887765433211  01267889999999998 677


Q ss_pred             HHHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          279 YDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      .++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.........                    
T Consensus       148 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~--------------------  207 (437)
T 2y27_A          148 GGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP--------------------  207 (437)
T ss_dssp             HHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG--------------------
T ss_pred             cchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc--------------------
Confidence            777778889999999987765 99999999999999999999999999987543221000                    


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcc-eecccCCCCcccC
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIG  436 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~-~~~~~~~~~~~~~  436 (501)
                                     ++        +++|.+++||+++++++.+++++.+|+.+++.||+||+++. ++......   ..
T Consensus       208 ---------------~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~---~~  261 (437)
T 2y27_A          208 ---------------VQ--------SSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVET---KD  261 (437)
T ss_dssp             ---------------GG--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTT---CS
T ss_pred             ---------------cc--------CCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCC---CC
Confidence                           00        38999999999999999999999889999999999998543 33322211   11


Q ss_pred             cccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       437 s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ..+.+.+++.++|+|.+++++++.|  +.|||+|+|.            +.+.+.++||+|||.
T Consensus       262 g~~~~~~~~~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t~~~~~~~~y~TGDl  311 (437)
T 2y27_A          262 GPTIWEDHFYPEIIDPETGEVLPDG--ELGELVFTSL------------TKEALPIIRYRTRDL  311 (437)
T ss_dssp             SCEECTTTEEEEEECTTTCCBCCTT--CCEEEEEEES------------SCSSSCCCSEEEEEE
T ss_pred             ceeEccCceEEEEEcCCCCCCCCCC--CccEEEEecC------------CcCCchhheeecCCE
Confidence            2566778999999993347777655  8999999982            334456899999995

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.97  E-value=1.5e-29  Score=256.15  Aligned_cols=238  Identities=14%  Similarity=0.074  Sum_probs=179.1

Q ss_pred             eeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecCh-HH
Q 010774          199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AH  277 (501)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~~  277 (501)
                      ...+++....  +.......++++++++|||||||.||+|.++|+++......+...+  ...++..+|++++..|+ +|
T Consensus        73 ~~~~~l~~~~--p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~  148 (443)
T 2y4o_A           73 STKNDLRDNY--PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSI--RAAGGRPGDTLHNAFGYGLF  148 (443)
T ss_dssp             BCHHHHHTTT--TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHH--HHTTCCTTCEEEECSCCSSS
T ss_pred             CcHHHHHhhC--CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHH--HHcCCCCCCEEEEeccCccc
Confidence            3455554432  1122334568899999999999999999999999887665443211  01267889999999998 57


Q ss_pred             HHHHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010774          278 IYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (501)
Q Consensus       278 ~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (501)
                      ..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.+.......                   
T Consensus       149 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-------------------  209 (443)
T 2y4o_A          149 TGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP-------------------  209 (443)
T ss_dssp             HHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-------------------
T ss_pred             ccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-------------------
Confidence            7777678889999999988765 99999999999999999999999999887543221000                   


Q ss_pred             ccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcc-eecccCCCCccc
Q 010774          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMI  435 (501)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~-~~~~~~~~~~~~  435 (501)
                                      ++        +++|.+++||+++++++.+++++.+|+.+++.||+||+++. +.......   .
T Consensus       210 ----------------~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~---~  262 (443)
T 2y4o_A          210 ----------------AE--------SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET---K  262 (443)
T ss_dssp             ----------------GG--------SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT---C
T ss_pred             ----------------cc--------CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC---C
Confidence                            01        38999999999999999999999899999999999998543 33322211   1


Q ss_pred             CcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhhccCcccCCCC
Q 010774          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       436 ~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                      ...+.+.+++.++|+|.+++++++.|  +.|||+|+|.            +++.|.++||+|||.
T Consensus       263 ~g~~~~~~~~~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t~~~~p~~~y~TGDl  313 (443)
T 2y4o_A          263 DGPVIWEDHFYPEIIDPVTGEVLPDG--SQGELVFTSL------------TKEAMPVIRYRTRDL  313 (443)
T ss_dssp             CSEEECTTTEEEEEECTTTCCBCCTT--CCEEEEEEES------------SCSSSCCSSEEEEEE
T ss_pred             CceEEccCCeEEEEEcCCCCCCCCCC--CceEEEEeCC------------CcccChhheeecCCE
Confidence            12556778999999993357777765  8999999983            334456899999995

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=91.32  E-value=1.1  Score=43.86  Aligned_cols=107  Identities=10%  Similarity=-0.054  Sum_probs=82.3

Q ss_pred             EEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC--chhHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEE
Q 010774           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSN--CPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA  153 (501)
Q Consensus        76 ~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v  153 (501)
                      ..+|.+.+...+..+++.+...|+.++|++....+-  ....+..+++++..|+.+++.++ ..++.+...++..++.++
T Consensus       104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~  182 (436)
T 3qov_A          104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTAL  182 (436)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEE
T ss_pred             EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEE
Confidence            468999999999999988888999999999999874  34455677888999999988765 477889999999999999


Q ss_pred             EEcCCChhhhhhcCcc-----CCCCccEEEEecCC
Q 010774          154 FVQENKIPSILSCLPR-----CCLYLKTIVSFANV  183 (501)
Q Consensus       154 l~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~  183 (501)
                      +.....+..+.+....     ....++.++.-+..
T Consensus       183 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  217 (436)
T 3qov_A          183 HAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP  217 (436)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred             EECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence            9877666555443211     13567777776554

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=90.99  E-value=1.2  Score=43.72  Aligned_cols=125  Identities=16%  Similarity=0.061  Sum_probs=88.6

Q ss_pred             CCCCcceEEeeccCCCCCc--cEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCEEEE
Q 010774           56 IPNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVP  131 (501)
Q Consensus        56 ~p~~~al~~~~~~~~~~~~--~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~  131 (501)
                      .++.++.+..-  .|.+|.  ...+|.+.+...+..+++.+...|+.++|++...++.+  ...+..+++++..|+.+++
T Consensus        90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP  167 (443)
T ss_dssp             CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred             ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence            34555544330  333342  24679999998888888888888999999999998853  4445667888999999988


Q ss_pred             ecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCcc-----CCCCccEEEEecCC
Q 010774          132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV  183 (501)
Q Consensus       132 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~  183 (501)
                      +++. +.+.+...++..++.+++.....+..+.+....     ....++.++.-+..
T Consensus       168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  223 (443)
T 2y4o_A          168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP  223 (443)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred             CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence            7764 788999999999999999877666555443211     12466777666544

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=90.70  E-value=3  Score=42.35  Aligned_cols=30  Identities=23%  Similarity=0.345  Sum_probs=25.1

Q ss_pred             CCCCeEEEEecCCCC-CCCceEEeecHHHHH
Q 010774          218 KKTNISTIMYTSGTT-GEPKGVVLTNQAIVA  247 (501)
Q Consensus       218 ~~~~~~~i~~TSGtT-G~PK~v~~sh~~l~~  247 (501)
                      .++.+.+..-||||| |.+|-+.+|...+-.
T Consensus        91 ~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~  121 (581)
T 4eql_A           91 SARTITGFLLSSGTSGGAQKMMPWNNKYLDN  121 (581)
T ss_dssp             CSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred             CCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence            456667899999999 779999999998755

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=90.47  E-value=1.1  Score=43.95  Aligned_cols=125  Identities=16%  Similarity=0.079  Sum_probs=88.5

Q ss_pred             CCCCcceEEeeccCCCCCc--cEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC--chhHHHHHHHHHhcCCEEEE
Q 010774           56 IPNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSN--CPEWIIAMEACNSQAITYVP  131 (501)
Q Consensus        56 ~p~~~al~~~~~~~~~~~~--~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~  131 (501)
                      .++.++.+..-  .|.+|.  ...+|.+.+...+..+++.+...|+.++|++...++.  ....+..+++++..|+.+++
T Consensus        88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            34566655440  233332  2468999999888888888888899999999998885  34445567888999999987


Q ss_pred             ecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCcc-----CCCCccEEEEecCC
Q 010774          132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV  183 (501)
Q Consensus       132 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~  183 (501)
                      +++ .+.+.+...++..++.+++.....+..+.+....     ....++.++.-+..
T Consensus       166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  221 (437)
T 2y27_A          166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP  221 (437)
T ss_dssp             CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred             CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence            765 4788999999999999999887666555443211     12456666665544

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=86.95  E-value=9.1  Score=38.02  Aligned_cols=122  Identities=12%  Similarity=0.017  Sum_probs=85.2

Q ss_pred             CCCCcceEEeeccCCCCCc--cEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc-hhHHHHHHHHHhcCCEEEEe
Q 010774           56 IPNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC-PEWIIAMEACNSQAITYVPL  132 (501)
Q Consensus        56 ~p~~~al~~~~~~~~~~~~--~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l  132 (501)
                      .++.+|++..-  .|.+|.  ...+|.+.+...+..+..   ..++.++|++...+|-. ...+..+++++..|+.++..
T Consensus       161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV  235 (501)
T ss_dssp             CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence            46777776650  222222  247899988877666544   45889999999988854 33344567888899988877


Q ss_pred             cCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCC
Q 010774          133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV  183 (501)
Q Consensus       133 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (501)
                      + ..+++.+...++..++..++.....+..+.+........++.++..+..
T Consensus       236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~  285 (501)
T 3ipl_A          236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK  285 (501)
T ss_dssp             S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred             C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence            6 4789999999999999999988877766655544433466666665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	501
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	3e-53
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	7e-47
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-46
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-40
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-28
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	1e-26
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-23

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  187 bits (477), Expect = 3e-53
 Identities = 60/447 (13%), Positives = 130/447 (29%), Gaps = 73/447 (16%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
                ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  +
Sbjct: 99  SQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 158

Query: 133 YDTLGANAVEFIINHAEVSIAFVQE------NKIPSILSCLPRCCLYLKTIVSFANVSSS 186
           +      AV   I  +   +    +        IP   +          T V    V   
Sbjct: 159 FGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR 218

Query: 187 QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
              + +        W + ++  + + +       +   I+YTSG+TG+PKGV+ T    +
Sbjct: 219 TGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 278

Query: 247 AEVL-SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG----- 299
                +   +F          D Y+    +  +       +  +  G +   + G     
Sbjct: 279 VYAATTFKYVFDYH-----PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWP 333

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
               + + + + +  +    P     +                                 
Sbjct: 334 TPARMCQVVDKHQVNILYTAPTAIRALM-------------------------------- 361

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEFLRVT--SGAPLTQGYG 416
               +    ++    S +R         + S   P+     E + +       P+   + 
Sbjct: 362 ---AEGDKAIEGTDRSSLR--------ILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW 410

Query: 417 LTESCSGCFTSLADVFNM-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN-- 473
            TE+     T L     +  G+   P   V+  L  V   G+    +   G + +  +  
Sbjct: 411 QTETGGFMITPLPGAIELKAGSATRPFFGVQPAL--VDNEGHPQEGATE-GNLVITDSWP 467

Query: 474 TLFSGYYKRPDLTEEVIV---DGWFHT 497
                 +   +  E+         + +
Sbjct: 468 GQARTLFGDHERFEQTYFSTFKNMYFS 494

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  168 bits (426), Expect = 7e-47
 Identities = 90/465 (19%), Positives = 148/465 (31%), Gaps = 82/465 (17%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
           W F   +A      ++     VS    G     TY EVY  A R    +R+ GV  GDR 
Sbjct: 14  WDFLERAAALFGRKEV-----VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRV 68

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
              G N    + A  A              L    + +I+NHAE  +     N +P + +
Sbjct: 69  ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
                      +V                  +   +  + +    + +     +     +
Sbjct: 129 IRGELKTVQHFVVMDEK--------------APEGYLAYEEALGEEADPVRVPERAACGM 174

Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
            YT+GTTG PKGVV +++A+V   L+   +        SE+D     +P+ H+    +  
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVVPMFHVNAWCLPY 231

Query: 286 HCIHKGCSIGF--WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
                G        R D   L+E       T  +GVP V+  +                 
Sbjct: 232 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLAL----------------- 274

Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 403
                                         + +        L+ ++ G +  P  +    
Sbjct: 275 ----------------------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARF 306

Query: 404 RVTSGAPLTQGYGLTESCSGCFT----------SLADVFNMIGTVGVPMTTVEARLESVP 453
               G  + QGYGLTE+                S  +   +    G+P+  V  R+    
Sbjct: 307 ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-E 364

Query: 454 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
           E           GE+ L+G  +  GYY   + T   +  DG+F T
Sbjct: 365 EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 409

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  169 bits (428), Expect = 2e-46
 Identities = 71/442 (16%), Positives = 137/442 (30%), Gaps = 70/442 (15%)

Query: 78  LTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           +TY+E+ +   +    +  S GV  GD   +Y    PE II + A +     +  ++   
Sbjct: 91  ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 150

Query: 137 GANAVEFIINHAEVSIAFVQEN-----KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
            +N++   IN  +  +    +      K+      +         +        +     
Sbjct: 151 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 210

Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
                    W    +         P    +   ++YTSG+TG PKGV  +    +   L 
Sbjct: 211 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL 270

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-----DVRYLM 305
             +    T     +ED +F+   +  I       +  +  GC+   + G     +     
Sbjct: 271 TMRYTFDT----HQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYW 326

Query: 306 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 365
           + I E K T F   P     +                                   +   
Sbjct: 327 DIIDEHKVTQFYVAPTALRLL-----------------------------------KRAG 351

Query: 366 APLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCS 422
              +++     +R         + S   P+   V E+     G    P+   Y  TES S
Sbjct: 352 DSYIENHSLKSLR--------CLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS 403

Query: 423 GCFTSLADVFNMI--GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSG 478
              T LA     +  G+   P   ++A +   P  G +  +S   G + ++    +    
Sbjct: 404 HLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFART 462

Query: 479 YYKRPDLTEEVIV---DGWFHT 497
            +K  D   +  +    G++ T
Sbjct: 463 IWKNHDRYLDTYLNPYPGYYFT 484

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  150 bits (378), Expect = 3e-40
 Identities = 77/427 (18%), Positives = 144/427 (33%), Gaps = 64/427 (14%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D   
Sbjct: 48  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 107

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +   +N ++ ++ FV +  +  IL+   +  +  K I+  +       +        
Sbjct: 108 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTF--- 164

Query: 198 CFSWEEFLQLGTLDCELPPK---KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
                  L  G  + +  P+   +   I+ IM +SG+TG PKGV L ++           
Sbjct: 165 ---VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 221

Query: 255 MFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPT 314
                  +                    +  + I     +  +R +    +  +Q+ K  
Sbjct: 222 PIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFLRSLQDYKIQ 280

Query: 315 MFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVF 374
               VP ++                                          + L+D    
Sbjct: 281 SALLVPTLFSFFA-------------------------------------KSTLIDKYDL 303

Query: 375 SKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434
           S + E   G       GA       E   +      + QGYGLTE  +       +  + 
Sbjct: 304 SNLHEIASG-------GAPLSKEVGEAVAKRFHLPGIRQGYGLTE-TTSAILITPEGDDK 355

Query: 435 IGTVGVPMTTVEARLESVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIV 491
            G VG  +   EA++     +  D   ++    RGE+C+RG  + SGY   P+ T  +I 
Sbjct: 356 PGAVGKVVPFFEAKV-----VDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALID 410

Query: 492 -DGWFHT 497
            DGW H+
Sbjct: 411 KDGWLHS 417

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  116 bits (291), Expect = 1e-28
 Identities = 78/455 (17%), Positives = 147/455 (32%), Gaps = 97/455 (21%)

Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
           Q F +   + PNN  +    V + +      LTY E+   A +       +G+      G
Sbjct: 27  QLFEEQVSKRPNNVAI----VCENEQ-----LTYHELNVKANQLARIFIEKGIGKDTLVG 77

Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
           I      +  I + A       YVP+        +++I++ ++  +   Q++ +  I   
Sbjct: 78  IMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI--- 134

Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
                                    +  G      E+ +++        P K T+++ ++
Sbjct: 135 ----------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVI 172

Query: 227 YTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH 286
           YTSGTTG PKG +L ++ I        ++F       +E+D    F  ++          
Sbjct: 173 YTSGTTGNPKGTMLEHKGIS-----NLKVFFENSLNVTEKDRIGQFASISFDASVWEMFM 227

Query: 287 CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK 342
            +  G S+         D     + I + + T+ +  P                      
Sbjct: 228 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV------------------ 269

Query: 343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF 402
                                +    + +L+                +G+A  P  V ++
Sbjct: 270 -----------------HLDPERILSIQTLIT---------------AGSATSPSLVNKW 297

Query: 403 LRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS 462
                       YG TE+     T +A    +  +V +       ++  V E        
Sbjct: 298 KE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVG 354

Query: 463 VPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
              GE+C+ G  L  GY+KRP+LT +  VD  F  
Sbjct: 355 EA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVP 388

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  110 bits (275), Expect = 1e-26
 Identities = 73/460 (15%), Positives = 133/460 (28%), Gaps = 81/460 (17%)

Query: 42  LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP 101
           +++  +    +A R P++  L     + G       LT+ E+        + + + G+ P
Sbjct: 1   MQTVNEMLRRAATRAPDHCAL--AVPARGL-----RLTHAELRARVEAVAARLHADGLRP 53

Query: 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
             R  +   N  + +IA+ A +        L   L +  +  +I   E++ A +   +  
Sbjct: 54  QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-- 111

Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
            +   + +     + I     V   +                         E P ++   
Sbjct: 112 QVADAIFQSGSGARIIFLGDLVRDGEPYSYGP-----------------PIEDPQREPAQ 154

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
            + I YTSGTTG PK  ++  +A  + VL +              +     +PL H+   
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG---LRHGRHNVVLGLMPLYHVVGF 211

Query: 282 IIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341
                        G +     +   D  +L                              
Sbjct: 212 FAVLVAALALD--GTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD------------- 256

Query: 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEE 401
                                      L +             L+ +    A +P  V E
Sbjct: 257 --------------------------ALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLE 290

Query: 402 FLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALS 461
            +           YG TE+ +  +          GT   P    E R   +  +G     
Sbjct: 291 TVHQHLPGEKVNIYGTTEAMNSLYM----RQPKTGTEMAPGFFSEVR---IVRIGGGVDE 343

Query: 462 SVPRGE----ICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
            V  GE    I    ++ F GY  +P  T E + DGW+ T
Sbjct: 344 IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  101 bits (253), Expect = 1e-23
 Identities = 58/453 (12%), Positives = 120/453 (26%), Gaps = 71/453 (15%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
                D A +  +   +                +Y+E+   A R  +  +  G+   DR 
Sbjct: 28  GDLLRDRAAKYGDRIAI----TCGNTH-----WSYRELDTRADRLAAGFQKLGIQQKDRV 78

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
            +   N  E+   + A        V    +  ++ + +    AE +   + +        
Sbjct: 79  VVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR 138

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
            L R        +           +   +      +     L T   +LP  K ++++ +
Sbjct: 139 SLARQVQSKLPTL-----------KNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFL 187

Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
             + G+TG  K +  T+   +     + +   V     S        +   +        
Sbjct: 188 QLSGGSTGLSKLIPRTHDDYIYS---LKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL 244

Query: 286 HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344
             ++ G  +              I+  K T+ + VP +                      
Sbjct: 245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMD---------------- 288

Query: 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR 404
                                         +  R      LQ +  G A         ++
Sbjct: 289 -----------------------------AASSRRDDLSSLQVLQVGGAKFSAEAARRVK 319

Query: 405 VTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP 464
              G  L Q +G+ E              ++ T G PM+  +       +   D +    
Sbjct: 320 AVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESR-VWDDHDRD-VKPGE 377

Query: 465 RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
            G +  RG     GYYK  +       +  F+ 
Sbjct: 378 TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYR 410

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	501
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2.7e-57  Score=476.59  Aligned_cols=405  Identities=14%  Similarity=0.171  Sum_probs=324.9

Q ss_pred             CCCCCCCHHH-HHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHH
Q 010774           38 SPAGLESPWQ-FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI  116 (501)
Q Consensus        38 ~~~~~~tl~~-~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~  116 (501)
                      ++....|+.+ +|+++++.+||++|+++.   ..+.+..+++||+||.++++++|++|+++|+++||+|+++++|+++++
T Consensus        66 f~~~~~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~i  142 (643)
T d1pg4a_          66 YEDGTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA  142 (643)
T ss_dssp             STTCEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHH
T ss_pred             CCCChhhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHH
Confidence            4444556654 577889999999999987   555566689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhh---------hhhc-CccCCCCccEEEEecCCChh
Q 010774          117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS---------ILSC-LPRCCLYLKTIVSFANVSSS  186 (501)
Q Consensus       117 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~---------~~~~-~~~~~~~~~~v~~~~~~~~~  186 (501)
                      +++|||+++|++++|+++.++++++.++++.++++++|+++.....         .... .......+..++.+......
T Consensus       143 v~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~  222 (643)
T d1pg4a_         143 VAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSD  222 (643)
T ss_dssp             HHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCC
T ss_pred             HHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcc
Confidence            9999999999999999999999999999999999999998753221         1111 11223456667666544321


Q ss_pred             hHHHhhhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-cceeeeeccccCCC
Q 010774          187 QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSE  265 (501)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~  265 (501)
                      ..    ..........+..........+...+++++++|+|||||||.||||+++|++++..... +...+     .+..
T Consensus       223 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~  293 (643)
T d1pg4a_         223 ID----WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHP  293 (643)
T ss_dssp             CC----CCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCT
T ss_pred             cc----cccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCC
Confidence            10    01112344555555544445556667899999999999999999999999997665443 33334     6789


Q ss_pred             CcEEEEecChHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCCh
Q 010774          266 EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA  339 (501)
Q Consensus       266 ~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  339 (501)
                      +|++++.+|++|++++.. ++.+|+.|+++++.+.     ++..+++.++++++|+++++|++++.+++..         
T Consensus       294 ~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~---------  364 (643)
T d1pg4a_         294 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEG---------  364 (643)
T ss_dssp             TCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTG---------
T ss_pred             CCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCc---------
Confidence            999999999999999886 7789999999999753     7899999999999999999999999987531         


Q ss_pred             hHHHHHHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhh---CCCeeeeec
Q 010774          340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS---GAPLTQGYG  416 (501)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~---~~~l~~~yG  416 (501)
                                                ....+..++        ++||.+++||+++++++.+++.+.+   ++.+++.||
T Consensus       365 --------------------------~~~~~~~dl--------~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG  410 (643)
T d1pg4a_         365 --------------------------DKAIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW  410 (643)
T ss_dssp             --------------------------GGGTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBC
T ss_pred             --------------------------chhccccCC--------CceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeec
Confidence                                      112233333        3899999999999999999999988   467999999


Q ss_pred             ccccCcceecccCC-CCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEec--CCccccccCCcccchhhh---
Q 010774          417 LTESCSGCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---  490 (501)
Q Consensus       417 ~tE~~~~~~~~~~~-~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---  490 (501)
                      +||+|++++...+. ...+++++|+|++|++++|+| ++|++++.+  +.|||+|+|  |+++.|||++++.+.+.+   
T Consensus       411 ~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g--~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~  487 (643)
T d1pg4a_         411 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFST  487 (643)
T ss_dssp             CGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSS
T ss_pred             hhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCCC--ceEEEEEecCCCcccccccCChhhchhhhccc
Confidence            99999877655443 345679999999999999999 999887765  899999999  578999999998887765   


Q ss_pred             ccCcccCCCC
Q 010774          491 VDGWFHTEVH  500 (501)
Q Consensus       491 ~dgw~~TGD~  500 (501)
                      .+|||+|||.
T Consensus       488 ~~g~~~TGDl  497 (643)
T d1pg4a_         488 FKNMYFSGDG  497 (643)
T ss_dssp             STTSEEEEEE
T ss_pred             CCCeEEcCCE
Confidence            5899999995

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3e-55  Score=453.55  Aligned_cols=392  Identities=23%  Similarity=0.312  Sum_probs=323.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      +...||+++|+++++++||++|+++.   ++  +..+++||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus         8 ~~~~~l~~~l~~~a~~~pd~~av~~~---~~--g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~   82 (534)
T d1v25a_           8 DEELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAY   82 (534)
T ss_dssp             CCCCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHcCCCeEEEEe---cC--CceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHH
Confidence            45568999999999999999999976   32  44578999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      |||+++|++++|++|.++.+++.++|+.++++.++++............ ....+...+.........          ..
T Consensus        83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~  151 (534)
T d1v25a_          83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAPEG----------YL  151 (534)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCCTT----------CE
T ss_pred             HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhh-cccccceeEEeecccccc----------cc
Confidence            9999999999999999999999999999999999999887776644433 334555555544432211          11


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                      .....   ...........++++++|+|||||||.||||+++|.+++.........   ........+++++.+|++|.+
T Consensus       152 ~~~~~---~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~  225 (534)
T d1v25a_         152 AYEEA---LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV---DGTALSEKDVVLPVVPMFHVN  225 (534)
T ss_dssp             EHHHH---CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTST---TTTCCCTTCEEEECSCTTSHH
T ss_pred             ccccc---ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhh---cccccccccccccccchhhhc
Confidence            11111   112233445567889999999999999999999999998765443221   223677899999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC--CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhc
Q 010774          280 DQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (501)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (501)
                      ++...+..+..|+++++...  ++..+...+.++++|++.++|.++..+++.......                      
T Consensus       226 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~----------------------  283 (534)
T d1v25a_         226 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH----------------------  283 (534)
T ss_dssp             HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC----------------------
T ss_pred             cccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccc----------------------
Confidence            99988888888888777654  899999999999999999999999998875433211                      


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCC-----
Q 010774          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF-----  432 (501)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~-----  432 (501)
                                     +        .++||.+++||++++++..+++++. +..+++.||+||++.+++.......     
T Consensus       284 ---------------~--------~~~lr~~~~gG~~~~~~~~~~~~~~-~~~i~~~yG~te~~~~~~~~~~~~~~~~~~  339 (534)
T d1v25a_         284 ---------------R--------LKTLRRLVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLS  339 (534)
T ss_dssp             ---------------C--------CSSCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSC
T ss_pred             ---------------c--------ccceeEEEEecCCCCHHHHHHHHHh-CCeeeeeccccccccceeecccCccccccC
Confidence                           1        1489999999999999999998864 8999999999999998776533221     


Q ss_pred             -----cccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          433 -----NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       433 -----~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                           ...+++|+|+||++++|+| +++++++.+.+++|||+|+|++++.|||++++.+.+.| .||||+|||.
T Consensus       340 ~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDl  412 (534)
T d1v25a_         340 EEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDI  412 (534)
T ss_dssp             HHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEE
T ss_pred             ccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCce
Confidence                 2347899999999999999 99999998877899999999999999999999999988 8999999995

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-54  Score=458.43  Aligned_cols=404  Identities=19%  Similarity=0.248  Sum_probs=317.7

Q ss_pred             CCCH-HHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCchhHHHHH
Q 010774           42 LESP-WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        42 ~~tl-~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~-~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      ..|+ .++|+++++++||++|+++.   +.+.+..+++||+||.++++++|++|+ ++|+++||+|+++++|++++++++
T Consensus        57 ~lN~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~  133 (640)
T d1ry2a_          57 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL  133 (640)
T ss_dssp             EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred             chhHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence            3344 67789999999999999987   555566689999999999999999997 679999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhh--------hhhcCccCCCCccEEEEecCCChhhHHHh
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS--------ILSCLPRCCLYLKTIVSFANVSSSQKKEA  191 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  191 (501)
                      |||+++|++++|+++.++++++.++++.++++++++.......        ...........+.....+........   
T Consensus       134 lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  210 (640)
T d1ry2a_         134 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV---  210 (640)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC---
T ss_pred             HHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc---
Confidence            9999999999999999999999999999999999998754321        11222222233444444332221100   


Q ss_pred             hhcCceEeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcce-eeeeccccCCCCcEEE
Q 010774          192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ-MFVVTGKVCSEEDTYF  270 (501)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~-~~~~~~~~~~~~d~~l  270 (501)
                      ........................+..++++++|+|||||||.||||+++|.+++........ .+     .+..+|+++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~-----~~~~~d~~l  285 (640)
T d1ry2a_         211 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF  285 (640)
T ss_dssp             CCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred             cccccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc-----CCCccccee
Confidence            001112233333333333444455566789999999999999999999999998877654432 33     678999999


Q ss_pred             EecChHHHHHHHH-HHHHHhcCcEEEEecC-----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010774          271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (501)
Q Consensus       271 ~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (501)
                      +.+|++|.+|+.. ++.+|+.|+++++.+.     ++..+++.++++++|+++++|++++.|.+..              
T Consensus       286 ~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~--------------  351 (640)
T d1ry2a_         286 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG--------------  351 (640)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC--------------
T ss_pred             eccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcc--------------
Confidence            9999999999875 7789999999988754     7899999999999999999999999876421              


Q ss_pred             HHHHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhC---CCeeeeecccccC
Q 010774          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESC  421 (501)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~---~~l~~~yG~tE~~  421 (501)
                                           ....++.++        ++||.+++||+++++++.+++.+.+|   ..+++.||+||++
T Consensus       352 ---------------------~~~~~~~~l--------~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~  402 (640)
T d1ry2a_         352 ---------------------DSYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG  402 (640)
T ss_dssp             ---------------------TTSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTC
T ss_pred             ---------------------ccccccCCC--------CceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccc
Confidence                                 111222333        38999999999999999999999885   4699999999999


Q ss_pred             cceecccCCC--CcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEec--CCccccccCCcccchhhh---ccCc
Q 010774          422 SGCFTSLADV--FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGW  494 (501)
Q Consensus       422 ~~~~~~~~~~--~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~dgw  494 (501)
                      ..+.......  ..+++++|+|+||++++|+| +++.....+.+..|||+++|  |+++.|||++++.+.+.|   .+||
T Consensus       403 ~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw  481 (640)
T d1ry2a_         403 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGY  481 (640)
T ss_dssp             SCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTS
T ss_pred             cccccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCe
Confidence            8766554433  34568999999999999999 77766655555789999998  689999999999998877   4599


Q ss_pred             ccCCCC
Q 010774          495 FHTEVH  500 (501)
Q Consensus       495 ~~TGD~  500 (501)
                      |+|||.
T Consensus       482 ~~TGDl  487 (640)
T d1ry2a_         482 YFTGDG  487 (640)
T ss_dssp             EEEEEE
T ss_pred             EEcCCc
Confidence            999995

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1e-53  Score=442.69  Aligned_cols=396  Identities=21%  Similarity=0.326  Sum_probs=312.0

Q ss_pred             CCCCCCCHHHHHHHHHHhC---CCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh
Q 010774           38 SPAGLESPWQFFCDSAKRI---PNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE  114 (501)
Q Consensus        38 ~~~~~~tl~~~l~~~a~~~---p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~  114 (501)
                      .|.+..|+.+.|.++++++   |+.+|+++.   ..+    +++||+||.+++.++|++|+++|+++||+|+|+++|+++
T Consensus        12 ~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e   84 (541)
T d1lcia_          12 YPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ   84 (541)
T ss_dssp             SCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSS
T ss_pred             CCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHH
Confidence            3344578999999999988   555566543   222    579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhc
Q 010774          115 WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (501)
Q Consensus       115 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  194 (501)
                      +++++|||+++|++++|+++.++.+++.++|+.++++++|++++..+.+.+... .+.....+++++.....        
T Consensus        85 ~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------  155 (541)
T d1lcia_          85 FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDY--------  155 (541)
T ss_dssp             THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCB--------
T ss_pred             HHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccc-cccccceeeeecCCccc--------
Confidence            999999999999999999999999999999999999999999988776655443 34566677666543321        


Q ss_pred             CceEeeHHHHHhcC-------CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCc
Q 010774          195 GVSCFSWEEFLQLG-------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEED  267 (501)
Q Consensus       195 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d  267 (501)
                       ..+..+.+.....       ....+.....++++++|+|||||||.||+|+++|++++.........+  .......++
T Consensus       156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~--~~~~~~~~~  232 (541)
T d1lcia_         156 -QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDT  232 (541)
T ss_dssp             -TTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTC
T ss_pred             -cccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhc--ccccccccc
Confidence             1123333333221       111223334568899999999999999999999999988766654432  122567899


Q ss_pred             EEEEecChHHHHHHHHHHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHH
Q 010774          268 TYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (501)
Q Consensus       268 ~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (501)
                      ++++.+|++|.+++...+..+..++.++.... +.......+.++++|.+..+|.++..+++..                
T Consensus       233 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~----------------  296 (541)
T d1lcia_         233 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST----------------  296 (541)
T ss_dssp             EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCS----------------
T ss_pred             cccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccc----------------
Confidence            99999999999999888888888888877665 8899999999999999999999999887521                


Q ss_pred             HHHHHHhhhhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCC-CeeeeecccccCccee
Q 010774          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCF  425 (501)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~-~l~~~yG~tE~~~~~~  425 (501)
                                           .....++        ++++.+++||+++++...+++.+.++. .+++.||+||++++++
T Consensus       297 ---------------------~~~~~~~--------~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  347 (541)
T d1lcia_         297 ---------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL  347 (541)
T ss_dssp             ---------------------CGGGSCC--------TTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSE
T ss_pred             ---------------------ccccccc--------ccceEEEecccccccccccccccccCCceeeecCCccccCceEE
Confidence                                 1111112        389999999999999999999998865 6899999999999888


Q ss_pred             cccCCCCcccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          426 TSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       426 ~~~~~~~~~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      ...... ..++++|+|+||++++|+|.+++..++.|  ++|||+|+|++++.||+++++.+...+ .+|||+|||.
T Consensus       348 ~~~~~~-~~~~svG~p~~~~~~~i~d~d~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl  420 (541)
T d1lcia_         348 ITPEGD-DKPGAVGKVVPFFEAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDI  420 (541)
T ss_dssp             ECCCC----CCCCBEECTTCEEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEE
T ss_pred             ecCccc-CCCCccccccCCCEEEEEECCCCcCCCCC--CeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCe
Confidence            765544 44589999999999999995556666655  899999999999999999999888877 7899999995

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=1e-49  Score=410.00  Aligned_cols=366  Identities=19%  Similarity=0.265  Sum_probs=300.5

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010774           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (501)
Q Consensus        40 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  119 (501)
                      +...||.++|+++|+++||++|+++.    +     +++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus        20 ~~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~   90 (514)
T d1amua_          20 PRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI   90 (514)
T ss_dssp             CTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHH
Confidence            35579999999999999999999975    3     68999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEe
Q 010774          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (501)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (501)
                      |||+++|++++|+++.++.+++.++++.++++++|++......+.......     ..........              
T Consensus        91 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------------  151 (514)
T d1amua_          91 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG-----QVEIFEEDTI--------------  151 (514)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS-----EEEECCCSTT--------------
T ss_pred             HHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc-----cccccccccc--------------
Confidence            999999999999999999999999999999999999987766554322211     1111111100              


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHHH
Q 010774          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (501)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  279 (501)
                            ..........+..++++++|+|||||||.||+|.+||.++..........+     .....+++++..|++|..
T Consensus       152 ------~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  220 (514)
T d1amua_         152 ------KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA  220 (514)
T ss_dssp             ------TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred             ------cccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceecccccc
Confidence                  011122233445678899999999999999999999999999999877766     888999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecC----CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010774          280 DQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (501)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (501)
                      ++..++.++..|+++++...    +...+++.+..+.++.+..+|........                           
T Consensus       221 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  273 (514)
T d1amua_         221 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP---------------------------  273 (514)
T ss_dssp             HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT---------------------------
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccccc---------------------------
Confidence            99988899999999988753    67888899999999999999876543110                           


Q ss_pred             hccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCC--Cc
Q 010774          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV--FN  433 (501)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~--~~  433 (501)
                                      .++        .+++.+++||+++++++.+++.+  +..+++.||+||++.+++......  ..
T Consensus       274 ----------------~~~--------~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~  327 (514)
T d1amua_         274 ----------------ERI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIG  327 (514)
T ss_dssp             ----------------TTC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCC
T ss_pred             ----------------ccc--------ccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccC
Confidence                            011        48999999999999999988766  678999999999999876655443  23


Q ss_pred             ccCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-------ccCcccCCCC
Q 010774          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-------VDGWFHTEVH  500 (501)
Q Consensus       434 ~~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-------~dgw~~TGD~  500 (501)
                      ..++.|.+.++..+.+.| +++..++.+  +.|||+|+||+++.|||+++..+.+.|       .||||+|||.
T Consensus       328 ~~~~~~~~~~~~~v~~~d-~~~~~~~~g--~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~  398 (514)
T d1amua_         328 HSVPIGAPIQNTQIYIVD-ENLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ  398 (514)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred             cccccccceeeeeEeeec-ccceecCCC--CeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCE
Confidence            346789999999999999 988888876  899999999999999999999888876       2689999996

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.6e-48  Score=401.30  Aligned_cols=381  Identities=18%  Similarity=0.191  Sum_probs=306.5

Q ss_pred             CCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010774           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (501)
Q Consensus        43 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~  122 (501)
                      .||.++|+++|+++||++|+++.   +      +++||+||.++++++|++|.++|+++||+|+++++|++++++++|||
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~   95 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL   95 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence            68999999999999999999875   3      58999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhh----cCccCCCCccEEEEecCCChhhHHHhhhcCceE
Q 010774          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS----CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (501)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  198 (501)
                      +++|++++|++|.++.+++.++|+.++++.+++++........    ............+.......            .
T Consensus        96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~  163 (536)
T d1mdba_          96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------F  163 (536)
T ss_dssp             HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------S
T ss_pred             HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc------------c
Confidence            9999999999999999999999999999999998753322111    11111122222222221111            1


Q ss_pred             eeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChHHH
Q 010774          199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (501)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~  278 (501)
                      ..++++.   ..........++++++|+|||||||.||+|++||.++...+......+     .+..+|++++..|++|.
T Consensus       164 ~~~~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~~  235 (536)
T d1mdba_         164 LPLEDLH---TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAHN  235 (536)
T ss_dssp             EEGGGCC---CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTSH
T ss_pred             cchhhcc---cCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----ccccccccccccccccc
Confidence            1222211   223334456788999999999999999999999999999999887776     88999999999999999


Q ss_pred             HHHHH-H-HHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010774          279 YDQII-E-THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (501)
Q Consensus       279 ~g~~~-~-~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (501)
                      +++.. + ...+..|.+++..+. ++..+++.+++++++.+..+|..+..+..........                   
T Consensus       236 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  296 (536)
T d1mdba_         236 YPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD-------------------  296 (536)
T ss_dssp             HHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-------------------
T ss_pred             cceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccc-------------------
Confidence            99874 3 444555677776654 9999999999999999999999998877643222111                   


Q ss_pred             hccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCccc
Q 010774          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI  435 (501)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~  435 (501)
                                                .++++.+++||+++++...+++.+.++......|+.+|.+..+...........
T Consensus       297 --------------------------~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (536)
T d1mdba_         297 --------------------------LSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIV  350 (536)
T ss_dssp             --------------------------CTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHH
T ss_pred             --------------------------cCcceeEEEeccccccccccchhhccCceeeecccccccccccccccccccccc
Confidence                                      138999999999999999999999999999999999998876665555555556


Q ss_pred             CcccccccC-eEEEEeecCCCCccCCCCCCCceEEEecCCccccccCCcccchhhh-ccCcccCCCC
Q 010774          436 GTVGVPMTT-VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTEVH  500 (501)
Q Consensus       436 ~s~G~p~p~-~~i~I~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TGD~  500 (501)
                      +++|+|+++ ..+.|.+ +++++++.+  +.|||+++|+.++.||++++..+...+ .+|||+|||.
T Consensus       351 ~~~g~p~~~~~~~~v~~-~~g~~~~~~--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~  414 (536)
T d1mdba_         351 NTQGKPMSPYDESRVWD-DHDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI  414 (536)
T ss_dssp             HCCCEESSTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEE
T ss_pred             CCcccCCCCcceEEEEc-CCCCeeccc--ccceeecCCCccccccccccccccccccccCccccCcc
Confidence            889999864 4555555 777777665  999999999999999999999888877 7899999994

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=6.4e-45  Score=372.18  Aligned_cols=378  Identities=19%  Similarity=0.221  Sum_probs=300.2

Q ss_pred             CCCHHHHHHHHHHhCCCCcceEEeeccCCCCCccEEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010774           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (501)
Q Consensus        42 ~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA  121 (501)
                      ++|+.++|+++|+++||++|+++.   +..    +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   73 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence            479999999999999999999986   433    6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEecCCCCHHHHHHHHHhcCceEEEEcCCChhhhhhcCccCCCCccEEEEecCCChhhHHHhhhcCceEeeH
Q 010774          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (501)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (501)
                      |+++|++++|++|.++++++.++++.++++++|++.......  ..... .....++.+                     
T Consensus        74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~--~~~~~-~~~~~~i~~---------------------  129 (503)
T d3cw9a1          74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD--AIFQS-GSGARIIFL---------------------  129 (503)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHH--HHHHT-TCCCEEEEH---------------------
T ss_pred             HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHH--HHhhh-ccccccccc---------------------
Confidence            999999999999999999999999999999999987643221  11111 122233332                     


Q ss_pred             HHHHhcC-----CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhcceeeeeccccCCCCcEEEEecChH
Q 010774          202 EEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (501)
Q Consensus       202 ~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  276 (501)
                      .++....     .........+++++++++|||||||.||+|.++|.++..........+   .......+++++.+|++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~  206 (503)
T d3cw9a1         130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY  206 (503)
T ss_dssp             HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred             hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence            2222211     122333455678999999999999999999999999998887765443   12456778999999998


Q ss_pred             HHHHHHH-HHHHHhcCcEEEEecC-CHHHHHHHHhhhcCcEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010774          277 HIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (501)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (501)
                      |..+... .+.+...++.+++.+. ++..+...+.++++++++.+|..+..+............                
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  270 (503)
T d3cw9a1         207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK----------------  270 (503)
T ss_dssp             SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCC----------------
T ss_pred             cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccccc----------------
Confidence            8888775 6667777777777664 999999999999999999999999988764433221111                


Q ss_pred             hhccCCCCCCcchhHHHHHHHHHHHHhCCceeEEEEecCCCCHHHHHHHHHhhCCCeeeeecccccCcceecccCCCCcc
Q 010774          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (501)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (501)
                                                 .++||.+++||++++++..+++.+.++..+.+.||+||++..+..........
T Consensus       271 ---------------------------~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~  323 (503)
T d3cw9a1         271 ---------------------------LDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE  323 (503)
T ss_dssp             ---------------------------CTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred             ---------------------------ccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence                                       13899999999999999999999999999999999999988777665544333


Q ss_pred             cCcccccccCeEEEEeecCCCCccCCCCCCCceEEEecC-CccccccCCcccchhhhccCcccCCCC
Q 010774          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN-TLFSGYYKRPDLTEEVIVDGWFHTEVH  500 (501)
Q Consensus       435 ~~s~G~p~p~~~i~I~d~~~~~~~~~~~~~~Gei~v~g~-~v~~gY~~~~~~~~~~~~dgw~~TGD~  500 (501)
                       .+.+.+.+...+.+.+ .++..++.|  +.|++++.+. ....+|+++++.+.+.|.||||+|||.
T Consensus       324 -~~~~~~~~~~~~~~~~-~~~~~~~~g--~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~  386 (503)
T d3cw9a1         324 -MAPGFFSEVRIVRIGG-GVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDV  386 (503)
T ss_dssp             -EBCCTTCCEEEECTTS-CTTCBCCTT--CCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEE
T ss_pred             -ccccccccceeeeeec-ccCcccCCC--ccccccccccccccccccCChhhhHHHhcCCceecccc
Confidence             5556666666666666 666666655  8898877764 566789999999999899999999995