Citrus Sinensis ID: 010784

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-
Protein Sequence
MADPSPAVDEASPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQCYSDTDCSDG
Secondary Structure (PSIPRED)
cccccccEEEEEEcccccEEEEccccccEEEEcccccHHcccccccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEEEccccccEEEEcccccEEEEccccccEEEEEcccccEEEEEcccccccEEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEccccEEEEEccccccccccEEEEEcccccEEEEEccccccccccccccccccccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccccccccEEEEEEcccccEEEEcccccEEEcccccEEcccccccccEEEEEEcccccEEEEcccccEEEcccccccccccccccEEEccccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEccccccccccccEEEEEEEEcccEEEEEEcccccEEEEEEcccccccEEEEcccccEEEEcccccccEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccccEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEccccEEEEEEcccccEEEEEEEEEEcccccEEEEEccccEEEEEEcccccccccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEccccEEEEEcccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEcccccccccccEEEEEccccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEEEcccccccccEEEEEEEcccccEEEEEccccEEEEEEEccccccEEEEcccccEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
madpspavdeaspspsttaiadLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQwpqvlvsgslptvRVREAYLARRIALLQfkfvdpldvcfysvakphdhilldnndifstqgssiqnikidnflsesYYRATLSDHKARitcmrlfplhetslfrsepqrtenvlvtsscdhsirlwwkgscqrcfkghngpvstlsdkllgdgsgkilasggeDATVRLWSLSSSGKRGQQALKATLyghekpiklmsvAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCcvgmtsvpgvpvdmkcHESMLYIASGSSVVTIDLRTMQkvmtpaickpilhsfsimpskslictggigkamTWDIrrsqdavkpqpmaeldghvgsvtqlhmdpykivtggrddlrinIWETDTGMLANSllcnypeeadistgcsAMAVSGCRIvtasygepgllqfrdfsnatcpvlkhevqndskfwgpqcysdtdcsdg
Flexible Loop (DISEMBL)
madpspavdeaspspSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWpqvlvsgslptVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHetslfrsepqrtENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVtiskdskvrVWDTstssavrssccvGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKhevqndskfwgpqcysdtdcsdg
Low Complexity Region (SEG)
MADPSPAVDEASPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQCYSDTDCSDG
Disordered region (IsUnstruct)
********************ADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG*EDATVRLWSL**********LKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRR************LDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQCY********
Disordered Region (DISOPRED)
MADPSPAVDEASPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQCYSDTDCSD*
Disordered Region (DISEMBL)
***************STTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLS********ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV*************SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQCYSDTDCSDG
Disordered Region (DISPRO)
*****PAVDEASPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQ**********
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADPSPAVDEASPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQCYSDTDCSDG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	501	2.2.26 [Sep-21-2011]
Q91WQ5	589	TAF5-like RNA polymerase	yes	no	0.313	0.266	0.299	1e-12
Q93794	587	F-box/WD repeat-containin	yes	no	0.688	0.587	0.230	3e-11
O75529	589	TAF5-like RNA polymerase	yes	no	0.313	0.266	0.284	5e-11
Q2HBX6	454	Nuclear distribution prot	N/A	no	0.295	0.325	0.314	2e-10
B2AEZ5	464	Nuclear distribution prot	yes	no	0.311	0.336	0.295	1e-09
D1ZEB4	460	Nuclear distribution prot	N/A	no	0.389	0.423	0.273	2e-09
C4JZS6	446	Nuclear distribution prot	N/A	no	0.255	0.286	0.302	6e-09
B6QC06	452	Nuclear distribution prot	N/A	no	0.277	0.307	0.298	8e-09
Q7RY30	453	Nuclear distribution prot	N/A	no	0.373	0.412	0.269	8e-09
B3S4I5	409	Lissencephaly-1 homolog O	N/A	no	0.249	0.305	0.291	1e-08

>sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 88/197 (44%), Gaps = 40/197 (20%)

Query: 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPV 209
           H A + C++  P               N L T S D ++RLW   +G+  R F GH GPV
Sbjct: 425 HLADVDCVKFHP-------------NSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPV 471

Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH 269
            +LS       +GK LAS GED  ++LW L+S        L   L GH   I  ++ +  
Sbjct: 472 LSLS----FSPNGKYLASAGEDQRLKLWDLASG------TLFKELRGHTDSITSLAFSP- 520

Query: 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIASGSSVV 328
            S L+ + S D+ VRVWD      +RS+CC         P D    E + +Y    S+V+
Sbjct: 521 DSGLIASASMDNSVRVWD------IRSTCC-------NTPADGSSGELVGVYTGQMSNVL 567

Query: 329 TIDLRTMQKVMTPAICK 345
           ++       ++   I +
Sbjct: 568 SVQFMACNLLLVTGITQ 584

Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex.
Mus musculus (taxid: 10090)

>sp|Q93794|SEL10_CAEEL F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans GN=sel-10 PE=1 SV=3

 Score = 70.5 bits (171), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 170/413 (41%), Gaps = 68/413 (16%)

Query: 34  NLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIA- 92
           NL+  D+  +A   K +K ++  D +W+ L  E++         PT RV  A+    IA 
Sbjct: 138 NLTGYDLLKVAQVSKNWKLISEIDKIWKSLGVEEFKH----HPDPTDRVTGAWQGTAIAA 193

Query: 93  -LLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRAT--- 148
            +     + P D+  +   K     L    DIF       + ++ D    E  + A    
Sbjct: 194 GVTIPDHIQPCDLNVHRFLK-----LQKFGDIFERAADKSRYLRADKI--EKNWNANPIM 246

Query: 149 ----LSDHKAR-ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRC 201
               L  H+   ITCM++                ++VLVT S D+++++W   KG     
Sbjct: 247 GSAVLRGHEDHVITCMQIH---------------DDVLVTGSDDNTLKVWCIDKGEVMYT 291

Query: 202 FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI 261
             GH G V T          G+ + SG  D TV++WS          +L  TL GH   +
Sbjct: 292 LVGHTGGVWTSQIS----QCGRYIVSGSTDRTVKVWSTVDG------SLLHTLQGHTSTV 341

Query: 262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE-SMLY 320
           + M++AG    +LVT S+D+ +RVWD  +           + ++ G    ++C +     
Sbjct: 342 RCMAMAGS---ILVTGSRDTTLRVWDVESGRH--------LATLHGHHAAVRCVQFDGTT 390

Query: 321 IASGSSVVTIDL---RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAM-TWDIRRS 376
           + SG    T+ +    T + + T       ++S      +S++C+G +  ++  WD  R 
Sbjct: 391 VVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRP 450

Query: 377 QDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSL 429
           +     + +A L GH    + + +    +V+   D   + +W+   G   + L
Sbjct: 451 E---GQECVALLQGHTSLTSGMQLRGNILVSCNADS-HVRVWDIHEGTCVHML 499

Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying.

Caenorhabditis elegans (taxid: 6239)

>sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1

 Score = 69.7 bits (169), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 40/197 (20%)

Query: 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPV 209
           H A + C++  P               N L T S D ++RLW   +G+  R F GH GPV
Sbjct: 425 HLADVDCVKFHP-------------NSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPV 471

Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH 269
            +L+       +GK LAS GED  ++LW L+S        L   L GH   I  ++ +  
Sbjct: 472 LSLA----FSPNGKYLASAGEDQRLKLWDLASG------TLYKELRGHTDNITSLTFSP- 520

Query: 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIASGSSVV 328
            S L+ + S D+ VRVWD      +R++ C         P D    E + +Y    S+V+
Sbjct: 521 DSGLIASASMDNSVRVWD------IRNTYC-------SAPADGSSSELVGVYTGQMSNVL 567

Query: 329 TIDLRTMQKVMTPAICK 345
           ++       ++   I +
Sbjct: 568 SVQFMACNLLLVTGITQ 584

Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex.

Homo sapiens (taxid: 9606)

>sp|Q2HBX6|LIS11_CHAGB Nuclear distribution protein PAC1-1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAC1-1 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 27/175 (15%)

Query: 129 SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188
           +S QN    N+L +S  R TL  H+  ITC+   P+  +             L + S D 
Sbjct: 82  TSRQNKDPVNWLPKSPARHTLQSHRQPITCVAFHPVFSS-------------LASGSEDQ 128

Query: 189 SIRLW-WK-GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG 246
           +I++W W+ G  +R  KGH   V  L     G     +LAS   D T++LW  S   K  
Sbjct: 129 TIKIWDWELGELERTIKGHTKTV--LDVDFGGPRGNTLLASCSSDLTIKLWDPSDDYKNI 186

Query: 247 QQALKATLYGHEKPIKLM-----SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           +     TL GH+  +  +      VAG    LLV+ S+D  +R+WD ST   V++
Sbjct: 187 R-----TLPGHDHSVSAVRFIPSGVAGGAGNLLVSASRDKTLRIWDVSTGYCVKT 236

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhances dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs.

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

>sp|B2AEZ5|LIS11_PODAN Nuclear distribution protein PAC1-1 OS=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) GN=PAC1-1 PE=3 SV=2

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 27/183 (14%)

Query: 121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV 180
           +++ ++  +S QN     +L +S  R TL  H+  ITC+   P+  +             
Sbjct: 83  SELANSTPTSRQNKDPVAWLPKSPARHTLQSHRNPITCVAFHPVFSS------------- 129

Query: 181 LVTSSCDHSIRLW-WK-GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238
           L + S D +I++W W+ G  +R  KGH   V  L     G     +LAS   D T++LW 
Sbjct: 130 LASGSEDQTIKIWDWELGELERTIKGHTKAV--LDVDFGGPRGNTLLASCSSDLTIKLWD 187

Query: 239 LSSSGKRGQQALKATLYGHEKPIKLM-----SVAGHKSFLLVTISKDSKVRVWDTSTSSA 293
            S   K  +     TL GH+  +  +      VAG    LLV+ S+D  +R+WD ST   
Sbjct: 188 PSDDYKNIR-----TLPGHDHSVSAVRFIPSGVAGGTGNLLVSASRDKTLRIWDVSTGYC 242

Query: 294 VRS 296
           V++
Sbjct: 243 VKT 245

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhances dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs.

Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) (taxid: 515849)

>sp|D1ZEB4|LIS11_SORMK Nuclear distribution protein PAC1-1 OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) GN=PAC1-1 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 28/223 (12%)

Query: 79  TVRVREAYLARR---IALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIK 135
           T +  E  L ++   +  LQ K + PL      + +  +HIL   +++ +   +S QN  
Sbjct: 48  TAKKYEGLLEKKWTSVVRLQKKSLTPLVTQIMDL-ESRNHIL--QSELDNATPTSRQNKD 104

Query: 136 IDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW-W 194
              +L  +  R TL  H+  ITC+   P+  +             L + S D +I++W W
Sbjct: 105 PVAWLPRAPPRHTLQSHRDPITCVAFHPVFSS-------------LASGSEDQTIKIWDW 151

Query: 195 K-GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253
           + G  +R  KGH   V  L     G     +LAS   D T++LW    S K  +     T
Sbjct: 152 ELGELERTIKGHTKAV--LDVDYGGPRGNTLLASCSSDLTIKLWDPLDSYKNIR-----T 204

Query: 254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           L GH+  +  +        LLV+ S+D  +R+WD ST   V++
Sbjct: 205 LPGHDHSVSAVRFIPGSGNLLVSASRDKTLRIWDVSTGYCVKT 247

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhances dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs.

Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) (taxid: 771870)

>sp|C4JZS6|LIS11_UNCRE Nuclear distribution protein PAC1-1 OS=Uncinocarpus reesii (strain UAMH 1704) GN=PAC1-1 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 24/152 (15%)

Query: 148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW-WK-GSCQRCFKGH 205
           TL  H+  ITC+   P+  +             L + S D+SI++W W+ G  +R  KGH
Sbjct: 109 TLGSHRGAITCVAFHPVFSS-------------LASGSEDYSIKIWDWELGELERTLKGH 155

Query: 206 NGPVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264
              V+ L     G   G+ +LAS   D T++LW  S+       A   TL+GH+  +  +
Sbjct: 156 TRTVTGLD---FGGQKGRTLLASCSNDLTIKLWDPSN-----DYANIRTLFGHDHSVSSV 207

Query: 265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
                   +L++ S+D+ +R+WDTST   V++
Sbjct: 208 RFLIPGGNILISASRDTTLRMWDTSTGFCVKT 239

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhances dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs.

Uncinocarpus reesii (strain UAMH 1704) (taxid: 336963)

>sp|B6QC06|LIS12_PENMQ Nuclear distribution protein nudF 2 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=nudF-2 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 22/161 (13%)

Query: 137 DNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW-WK 195
           DN+L       T   H+  ITC+   P+  +             L +SS D +I++W W+
Sbjct: 109 DNWLPGPASTRTFESHRDAITCIAFHPIFTS-------------LASSSEDCTIKIWDWE 155

Query: 196 -GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254
            G  +R  KGH   V+ L     G     +LAS   D TV+LW  S    +G   ++ TL
Sbjct: 156 LGELERTLKGHIRAVTGLD--FGGQKGNTLLASCSSDLTVKLWDPS----KGYANIR-TL 208

Query: 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR 295
            GH+  +  +        LLV+  +D+ +R+WD ST   V+
Sbjct: 209 SGHDHSVSAVRFLTSTENLLVSAGRDASIRIWDVSTGYCVK 249

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhances dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs.

Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) (taxid: 441960)

>sp|Q7RY30|LIS11_NEUCR Nuclear distribution protein pac1-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pac1-1 PE=3 SV=2

 Score = 62.4 bits (150), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 36/223 (16%)

Query: 79  TVRVREAYLARR---IALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIK 135
           T +  E  L ++   +  LQ K +D          +  +HIL   +++ +   +S QN  
Sbjct: 48  TAKKYEGLLEKKWTSVVRLQKKIMD---------LESRNHIL--QSELDNATPTSRQNKD 96

Query: 136 IDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW-W 194
              +L  +  R TL  H+  ITC+   P+  +             L + S D +I++W W
Sbjct: 97  PVAWLPRAPPRHTLQSHRDPITCVAFHPVFSS-------------LASGSEDQTIKIWDW 143

Query: 195 K-GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253
           + G  +R  KGH   V  L     G     +LAS   D T++LW    S K  +     T
Sbjct: 144 ELGELERTIKGHTKAV--LDVDYGGPRGNTLLASCSSDLTIKLWDPLDSYKNIR-----T 196

Query: 254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           L GH+  +  +        LLV+ S+D  +R+WD ST   V++
Sbjct: 197 LPGHDHSVSAVRFIPGSGNLLVSASRDKTLRIWDVSTGYCVKT 239

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhances dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|B3S4I5|LIS1_TRIAD Lissencephaly-1 homolog OS=Trichoplax adhaerens GN=TRIADDRAFT_50647 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 26/151 (17%)

Query: 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFK 203
           + +LS H++ ITC+   P++             NV+V+SS D S+++W    G  +R  +
Sbjct: 100 KHSLSGHRSPITCVVFHPVY-------------NVMVSSSEDASMKIWDYESGDFERTLR 146

Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263
           GH   V  L+     D SGK+LAS   D TV++W   +         + TL GH+  +  
Sbjct: 147 GHTDSVQDLA----FDSSGKLLASSSADMTVKIWDFQTF------ECRMTLRGHDHNVSS 196

Query: 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAV 294
           +       FLL + S+D  +++W+ +T   V
Sbjct: 197 VCFLPSGDFLLSS-SRDKTIKMWEVATGYCV 226

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Trichoplax adhaerens (taxid: 10228)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	501
296082861	491	unnamed protein product [Vitis vinifera]	0.968	0.987	0.692	0.0
359488974	494	PREDICTED: ribosome assembly protein C18	0.968	0.981	0.688	0.0
147866283	491	hypothetical protein VITISV_042443 [Viti	0.968	0.987	0.688	0.0
224141357	498	f-box family protein [Populus trichocarp	0.966	0.971	0.699	0.0
356550956	501	PREDICTED: pleiotropic regulator 1-like	0.952	0.952	0.621	1e-167
356573462	452	PREDICTED: nuclear distribution protein	0.854	0.946	0.556	1e-141
222617879	512	hypothetical protein OsJ_00668 [Oryza sa	0.942	0.921	0.469	1e-110
218187648	512	hypothetical protein OsI_00688 [Oryza sa	0.942	0.921	0.469	1e-110
357125759	490	PREDICTED: ribosome assembly protein C18	0.944	0.965	0.476	1e-109
259489840	486	uncharacterized protein LOC100303822 [Ze	0.946	0.975	0.451	1e-108

>gi|296082861|emb|CBI22162.3| unnamed protein product [Vitis vinifera]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/488 (69%), Positives = 392/488 (80%), Gaps = 3/488 (0%)

Query: 16  STTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSG 75
           ++T I DL+ D++A C   L LQD+SNMAMSCK  K VAYSDS+WQR F E WP  + S 
Sbjct: 3   TSTTITDLDADSLAECGRYLDLQDLSNMAMSCKFLKTVAYSDSIWQRWFSEHWPLQMPST 62

Query: 76  SLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLD-NNDIFSTQGSSIQNI 134
                 VRE+YLARR AL QFKFVDPL   F++ AKP +H+LLD NNDI  +QGS IQ +
Sbjct: 63  FSQASGVRESYLARRTALRQFKFVDPLAAQFHTDAKPFNHLLLDKNNDIIFSQGSVIQIM 122

Query: 135 KIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW 194
           K+ +  S   +  TL+DH ARITCMRLFPL ETSLFRSE QR ENVLVTSSCDHSIRLWW
Sbjct: 123 KMGSIFSGRDFVVTLNDHNARITCMRLFPLSETSLFRSETQREENVLVTSSCDHSIRLWW 182

Query: 195 KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254
           KGSCQRCF+GHNGPVSTLSDKLLGDGSGK+ ASGGED TVRLWSLSSSGKRGQQALKATL
Sbjct: 183 KGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDGTVRLWSLSSSGKRGQQALKATL 242

Query: 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKC 314
           YGH KP+KLM+VAGHK+ LLVTISKDSKVRVWDT+TSSAVRSSCCVGMTSV G PVDMKC
Sbjct: 243 YGHAKPVKLMTVAGHKTSLLVTISKDSKVRVWDTTTSSAVRSSCCVGMTSVLGAPVDMKC 302

Query: 315 HESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIR 374
           +ES+L++A+GSSV TIDLRTMQ+V+T AI +  ++SF I+PSKSLICTGG GKAM WDIR
Sbjct: 303 YESLLFVAAGSSVSTIDLRTMQRVITAAIGQHEVYSFDILPSKSLICTGGDGKAMLWDIR 362

Query: 375 RSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYP 434
           +SQ+ +KP+P+ E+DGH G VT LHMDPYKIVTGG +D  +N+WE DTG   N+L C+  
Sbjct: 363 KSQETLKPEPVIEVDGHTGPVTLLHMDPYKIVTGGPEDDHVNVWELDTGTQTNTLACSSD 422

Query: 435 EEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSNATCPV-LKHEVQNDSKFWGPQC 492
           E  + + GCSAMA  GCRIVTAS G E GL+ FRDF++ATCPV   HE +  SKFW PQC
Sbjct: 423 EGPNSNPGCSAMAADGCRIVTASCGTEDGLVWFRDFTDATCPVSSSHEDKPASKFWDPQC 482

Query: 493 YSDTDCSD 500
           Y DT+ SD
Sbjct: 483 YGDTENSD 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488974|ref|XP_002277161.2| PREDICTED: ribosome assembly protein C18.05c [Vitis vinifera]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/491 (68%), Positives = 392/491 (79%), Gaps = 6/491 (1%)

Query: 16  STTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSG 75
           ++T I DL+ D++A C   L LQD+SNMAMSCK  K VAYSDS+WQR F E WP  + S 
Sbjct: 3   TSTTITDLDADSLAECGRYLDLQDLSNMAMSCKFLKTVAYSDSIWQRWFSEHWPLQMPST 62

Query: 76  SLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLD-NNDIFSTQ---GSSI 131
                 VRE+YLARR AL QFKFVDPL   F++ AKP +H+LLD NNDI  +Q   GS I
Sbjct: 63  FSQASGVRESYLARRTALRQFKFVDPLAAQFHTDAKPFNHLLLDKNNDIIFSQVYRGSVI 122

Query: 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191
           Q +K+ +  S   +  TL+DH ARITCMRLFPL ETSLFRSE QR ENVLVTSSCDHSIR
Sbjct: 123 QIMKMGSIFSGRDFVVTLNDHNARITCMRLFPLSETSLFRSETQREENVLVTSSCDHSIR 182

Query: 192 LWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK 251
           LWWKGSCQRCF+GHNGPVSTLSDKLLGDGSGK+ ASGGED TVRLWSLSSSGKRGQQALK
Sbjct: 183 LWWKGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDGTVRLWSLSSSGKRGQQALK 242

Query: 252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD 311
           ATLYGH KP+KLM+VAGHK+ LLVTISKDSKVRVWDT+TSSAVRSSCCVGMTSV G PVD
Sbjct: 243 ATLYGHAKPVKLMTVAGHKTSLLVTISKDSKVRVWDTTTSSAVRSSCCVGMTSVLGAPVD 302

Query: 312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTW 371
           MKC+ES+L++A+GSSV TIDLRTMQ+V+T AI +  ++SF I+PSKSLICTGG GKAM W
Sbjct: 303 MKCYESLLFVAAGSSVSTIDLRTMQRVITAAIGQHEVYSFDILPSKSLICTGGDGKAMLW 362

Query: 372 DIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLC 431
           DIR+SQ+ +KP+P+ E+DGH G VT LHMDPYKIVTGG +D  +N+WE DTG   N+L C
Sbjct: 363 DIRKSQETLKPEPVIEVDGHTGPVTLLHMDPYKIVTGGPEDDHVNVWELDTGTQTNTLAC 422

Query: 432 NYPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSNATCPV-LKHEVQNDSKFWG 489
           +  E  + + GCSAMA  GCRIVTAS G E GL+ FRDF++ATCPV   HE +  SKFW 
Sbjct: 423 SSDEGPNSNPGCSAMAADGCRIVTASCGTEDGLVWFRDFTDATCPVSSSHEDKPASKFWD 482

Query: 490 PQCYSDTDCSD 500
           PQCY DT+ SD
Sbjct: 483 PQCYGDTENSD 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866283|emb|CAN79923.1| hypothetical protein VITISV_042443 [Vitis vinifera]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/488 (68%), Positives = 390/488 (79%), Gaps = 3/488 (0%)

Query: 16  STTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSG 75
           ++T I DL+ D++A     L LQD+SNMAMSCK  K VAYSDS+WQR F E WP  + S 
Sbjct: 3   TSTTITDLDADSLAEYGRYLDLQDLSNMAMSCKFLKTVAYSDSIWQRWFSEHWPLQMPST 62

Query: 76  SLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLD-NNDIFSTQGSSIQNI 134
                 VRE+YLARR AL QFKFVDPL   F++ AKP +H+LLD NNDI  +QGS IQ +
Sbjct: 63  FSQASGVRESYLARRTALRQFKFVDPLAAQFHTDAKPFNHLLLDKNNDIIFSQGSVIQIM 122

Query: 135 KIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW 194
           K+ +  S   +  TL+DH ARITCMRLFPL ETSLFRSE QR ENVLVTSSCDHSIRLWW
Sbjct: 123 KMGSIFSGRDFVVTLNDHNARITCMRLFPLSETSLFRSETQREENVLVTSSCDHSIRLWW 182

Query: 195 KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254
           KGSCQRCF+GHNGPVSTLSDKLLGDGSGK+ ASGGED TVRLWSLSSSGKRGQQALKATL
Sbjct: 183 KGSCQRCFRGHNGPVSTLSDKLLGDGSGKVFASGGEDGTVRLWSLSSSGKRGQQALKATL 242

Query: 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKC 314
           YGH KP+KLM+VAGHK+ LLVTISKDSKVRVWDT+TSSAVRSSCCVGMTSV G PVDMKC
Sbjct: 243 YGHAKPVKLMTVAGHKTSLLVTISKDSKVRVWDTTTSSAVRSSCCVGMTSVLGAPVDMKC 302

Query: 315 HESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIR 374
           +ES+L++A+GSSV TIDLRTMQ+V+T AI +  ++SF I+PSKSLICTGG GKAM WDIR
Sbjct: 303 YESLLFVAAGSSVSTIDLRTMQRVITAAIGQHEVYSFDILPSKSLICTGGDGKAMLWDIR 362

Query: 375 RSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYP 434
           +SQ+ +KP+P+ E+DGH G VT LHMDPYKIVTGG +D  +N+WE DTG   N+L C+  
Sbjct: 363 KSQETLKPEPVIEVDGHTGPVTLLHMDPYKIVTGGPEDDHVNVWELDTGTQTNTLACSSD 422

Query: 435 EEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSNATCPV-LKHEVQNDSKFWGPQC 492
           E  + + GCSAMA  GCRIVTAS G E GL+ FRDF++ATCPV   HE +  SKFW P C
Sbjct: 423 EGPNSNPGCSAMAADGCRIVTASCGTEDGLVWFRDFTDATCPVSSSHEDKPASKFWDPXC 482

Query: 493 YSDTDCSD 500
           Y DT+ SD
Sbjct: 483 YGDTENSD 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141357|ref|XP_002324039.1| f-box family protein [Populus trichocarpa] gi|222867041|gb|EEF04172.1| f-box family protein [Populus trichocarpa]

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/496 (69%), Positives = 390/496 (78%), Gaps = 12/496 (2%)

Query: 10  EASPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWP 69
           E S + +TT I DLNED++AHCA  LSLQD+SN+A +CK  K VAYSD +WQ  FRE WP
Sbjct: 4   EPSSTATTTRITDLNEDSLAHCATYLSLQDLSNLATTCKSLKRVAYSDPIWQHCFREHWP 63

Query: 70  QVLVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFY-SVAKPHDHILLDNNDIFSTQG 128
           + L    L T  +REAYL RR+A+ QFKFVDPL    Y + AKP DHI+LD NDI  +QG
Sbjct: 64  REL----LQTSGLREAYLKRRVAVQQFKFVDPLVADLYITGAKPFDHIILDKNDISFSQG 119

Query: 129 SS----IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184
           S     +Q   ID+FL+       LSDH ARITCMRLFPL ETSLFRSE QR ENVLVTS
Sbjct: 120 SYPGSLVQMTNIDSFLNGRDGVTALSDHNARITCMRLFPLSETSLFRSETQRKENVLVTS 179

Query: 185 SCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244
           SCDHSIRLWWKGSCQRCF+GHNGPV TLSDKLLGDGS K+LASGGED TVRLWSLSSSGK
Sbjct: 180 SCDHSIRLWWKGSCQRCFRGHNGPVLTLSDKLLGDGSAKVLASGGEDGTVRLWSLSSSGK 239

Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS 304
           RGQ ALKATLYGHEKPIKLMSVAGH++ LL TISKDSKVRVWDT+TSSAVRSSCCVGMTS
Sbjct: 240 RGQHALKATLYGHEKPIKLMSVAGHRTSLLATISKDSKVRVWDTTTSSAVRSSCCVGMTS 299

Query: 305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG 364
           VPG PVD+KC ES+LY+A+GSSVV IDLRTMQKV+T AI +P L SF+I+PSK LICTGG
Sbjct: 300 VPGAPVDVKCCESLLYVAAGSSVVAIDLRTMQKVITVAIYQPKLCSFAIVPSKPLICTGG 359

Query: 365 IGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGM 424
           I KA  WDIR +Q+ +KP+P+AELDGH G VT LHMDPYKIVTGG +D  IN+WETDTG 
Sbjct: 360 IDKAKLWDIRINQETLKPEPVAELDGHTGPVTLLHMDPYKIVTGGPEDSYINVWETDTGA 419

Query: 425 LANSLLCNYPEEADIST--GCSAMAVSGCRIVTASYGEP-GLLQFRDFSNATCPVLKHEV 481
             NS +C   + A  S+  GCSAMAV+G RIVTASYGE  GL+ FRDF NATC V K E 
Sbjct: 420 QTNSFICCPSDAASSSSGMGCSAMAVNGTRIVTASYGEEHGLVCFRDFFNATCAVSKRED 479

Query: 482 QNDSKFWGPQCYSDTD 497
              SKFW PQ YSD D
Sbjct: 480 VLASKFWDPQSYSDGD 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550956|ref|XP_003543846.1| PREDICTED: pleiotropic regulator 1-like [Glycine max]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 305/491 (62%), Positives = 369/491 (75%), Gaps = 14/491 (2%)

Query: 10  EASPSPST--TAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQ 67
           E S SP+T  T I DLNED +AHCA +LSL D+ NMAM+    K +AYSD +WQR FRE 
Sbjct: 3   EQSRSPATPATTITDLNEDCIAHCAGHLSLGDVCNMAMTSSALKRLAYSDFIWQRFFREH 62

Query: 68  WPQVL---VSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIF 124
           W   L    SG+      R  Y+ R  AL QFKFVDP  + F + AKP D +LL  N +F
Sbjct: 63  WHLELPWHSSGNGGGGGARGVYMVRHAALRQFKFVDPFVLDFDAHAKPFDQLLLHKNHLF 122

Query: 125 -STQGSSIQNIKIDNFLSESY--YRATLSDHKARITCMRLFPLHE-TSLFRSEPQRTENV 180
            S QGS ++ I +D  L  +   +  +L  HKARITCMRLFPL+E TS+FR + Q  +NV
Sbjct: 123 YSQQGSRVEVIDLDGCLKRTTTDFFHSLCYHKARITCMRLFPLNEMTSVFRGDTQGEQNV 182

Query: 181 LVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLS 240
           LVTSSCDHSIRLWWKGS  RCF+GHNGPV +LS+KLLG+   K+LASGGED TVRLWSL 
Sbjct: 183 LVTSSCDHSIRLWWKGSSLRCFRGHNGPVLSLSNKLLGEDGSKVLASGGEDGTVRLWSLG 242

Query: 241 SSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDT--STSSAVRSSC 298
           SSGKRGQ+ALKAT YGHEKP+ LMSVAGHK+ LLVTIS+DSKVRVWDT  +TSSAVR+SC
Sbjct: 243 SSGKRGQRALKATFYGHEKPVNLMSVAGHKTSLLVTISRDSKVRVWDTGTATSSAVRTSC 302

Query: 299 CVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS 358
           CVGM SVPG P++MKCHES+LY+A+GSSV   DLRTMQKV+T A+ +P L SF  +PSK 
Sbjct: 303 CVGMASVPGTPLNMKCHESLLYVAAGSSVAAFDLRTMQKVITAAVHQPKLCSFDAVPSKY 362

Query: 359 LICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIW 418
           LICTGG G+AM WD+RR+Q+++KP+P+AELDGH G VT LHMDPYKIVTGG D+  +N+W
Sbjct: 363 LICTGGNGRAMLWDVRRNQESLKPEPIAELDGHCGQVTLLHMDPYKIVTGGPDNAYVNVW 422

Query: 419 ETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP-GLLQFRDFSNATCPVL 477
           E DTG+  NSLLC+  ++A   +GC AM V GCRI TASY E  G+L+FRDF++AT PV 
Sbjct: 423 EVDTGVQTNSLLCSSTDDA--GSGCDAMTVDGCRITTASYYEDLGVLRFRDFNHATNPVT 480

Query: 478 KHEVQNDSKFW 488
           K E +  SKFW
Sbjct: 481 KLENEPSSKFW 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573462|ref|XP_003554878.1| PREDICTED: nuclear distribution protein PAC1-like [Glycine max]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/485 (55%), Positives = 333/485 (68%), Gaps = 57/485 (11%)

Query: 12  SPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQV 71
           SP P  T I DLNED +AHCA +LSL D+ N+AM+    K +AYSDS+WQR F       
Sbjct: 7   SPVPPATTITDLNEDCIAHCAGHLSLGDVCNLAMASSALKRLAYSDSIWQRFF------- 59

Query: 72  LVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSI 131
                           +    + QF      DVCF+++    D +L  +      QGS +
Sbjct: 60  ----------------SCSSGIEQFA-----DVCFFTILHSADLVLCGD------QGSCV 92

Query: 132 QNIKIDNF---LSESYYRATLSDHKARITCMRLFPLHE-TSLFRSEPQRTENVLVTSSCD 187
           + I +D      S  ++ +             LFPL+E TS+FR + Q  +NVLVTSSCD
Sbjct: 93  EMIDLDGCPKRTSAHFFHS-------------LFPLNEMTSVFRGDTQGEKNVLVTSSCD 139

Query: 188 HSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ 247
           HSIRLWWKGS  RCF+GHNGPV +LS+KLLG+   K+LASGGED TVRLWSL SSGKRGQ
Sbjct: 140 HSIRLWWKGSSLRCFRGHNGPVLSLSNKLLGEDGRKVLASGGEDGTVRLWSLGSSGKRGQ 199

Query: 248 QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDT--STSSAVRSSCCVGMTSV 305
            ALKATLYGHEKP+ LMSVAGHK+ LLV+IS+DSKV VWDT  +TSSAVR+SCCVGM SV
Sbjct: 200 LALKATLYGHEKPVNLMSVAGHKTSLLVSISRDSKVSVWDTGAATSSAVRTSCCVGMASV 259

Query: 306 PGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI 365
           PG PV+MKCHES+LY+A+GSS    DLRTMQKV+T A+ +P L SF  +PSK LI TGG 
Sbjct: 260 PGTPVNMKCHESLLYVAAGSSATAFDLRTMQKVITAAVHQPKLCSFDAIPSKYLIRTGGD 319

Query: 366 GKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGML 425
           G+AM WD+RR+Q+++KP+P+AELDGH G VT LHMDPYKIVTGG D+  +N+WE DTG+ 
Sbjct: 320 GRAMLWDVRRNQESLKPEPIAELDGHCGQVTLLHMDPYKIVTGGPDNAYVNVWEVDTGVQ 379

Query: 426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE-PGLLQFRDFS-NATCPVLKHEVQN 483
            NSLLC+  + A   +GC AMAV GCRI T SY E  G+L FRD++ +AT PV K E + 
Sbjct: 380 TNSLLCSLTDGA--GSGCDAMAVDGCRITTTSYSEDSGVLCFRDYNHDATNPVTKLENEP 437

Query: 484 DSKFW 488
            SKFW
Sbjct: 438 SSKFW 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222617879|gb|EEE54011.1| hypothetical protein OsJ_00668 [Oryza sativa Japonica Group]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/492 (46%), Positives = 314/492 (63%), Gaps = 20/492 (4%)

Query: 11  ASPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWP- 69
            +P P   ++ADL+ D +AHCA +L  +D++++A++C+  +  AY D+VW RLFR QWP 
Sbjct: 3   GAPPPPARSLADLDGDVLAHCARSLVARDVASLAVACRPLRASAYCDAVWYRLFRNQWPS 62

Query: 70  QVLVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFY---SVAKPHDHILLDNNDIFST 126
           Q +  G+L    +RE Y+ R   + Q KFVDP+   +Y   +   P  H++LD N I+ +
Sbjct: 63  QQVPRGAL---GLRELYIRRHTEVHQMKFVDPISAFYYPNPTEVTP-SHLMLDRNYIWLS 118

Query: 127 QGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186
           QG  ++ +++D    E     T   H ARITCMRLFPL +  LFR + Q  E  LVTSS 
Sbjct: 119 QGLMVRRLRVD--CPEIELVETYKSHGARITCMRLFPLIDIPLFRGDSQTNEKALVTSSA 176

Query: 187 DHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG 246
           D ++RL WKG   RCF+GH+GPV+ LSDKLLGDG  K+LASGGED TVRLWS+S+ GK  
Sbjct: 177 DRTVRLCWKGH-SRCFRGHSGPVTALSDKLLGDGEFKLLASGGEDCTVRLWSMSTRGK-- 233

Query: 247 QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT--S 304
              L +T +GHEK + L+SVA HK  LLV+ SKDSKV++WDT    +  SS CVG T  S
Sbjct: 234 NHPLISTFHGHEKALSLLSVARHKPSLLVSCSKDSKVKLWDTMAPPSSGSSSCVGSTHLS 293

Query: 305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG 364
               P+ +KCHES+ YIA+GS V TIDLRTM+K    A+    + S  ++PS+ LICTG 
Sbjct: 294 TNSAPIAVKCHESLCYIAAGSEVTTIDLRTMKKASVLALRDHRILSCEMLPSEWLICTGI 353

Query: 365 IGKAMTWDIRRSQDAVKPQPMAELDGHVGS-VTQLHMDPYKIVTGGRDDLRINIWETDTG 423
             KA+ WDIR+SQ+   P  +AEL       VT LH+DPYK++TG   D ++++WET TG
Sbjct: 354 KNKALLWDIRKSQEL--PNIVAELQSESDEPVTFLHLDPYKVITGAPSDGQVHVWETQTG 411

Query: 424 MLANSLLCNYPEEADISTGCSAMAVSGCRIVTA-SYGEPGLLQFRDFSNATCPV-LKHEV 481
             AN+L C  P ++   +  SAMAV GCRI  A S  E  ++ +RDF  ++ PV L    
Sbjct: 412 HFANTLSCGEPAKSADRSTLSAMAVDGCRIAMAGSSAEVDMVHYRDFLMSSVPVSLPGNS 471

Query: 482 QNDSKFWGPQCY 493
           +  S+FWGPQ Y
Sbjct: 472 KEVSRFWGPQEY 483

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218187648|gb|EEC70075.1| hypothetical protein OsI_00688 [Oryza sativa Indica Group]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/492 (46%), Positives = 314/492 (63%), Gaps = 20/492 (4%)

Query: 11  ASPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWP- 69
            +P P   ++ADL+ D +AHCA +L  +D++++A++C+  +  AY D+VW RLFR QWP 
Sbjct: 3   GAPPPPARSLADLDGDVLAHCAHSLVARDVASLAVACRPLRASAYCDAVWYRLFRNQWPS 62

Query: 70  QVLVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFY---SVAKPHDHILLDNNDIFST 126
           Q +  G+L    +RE Y+ R   + Q KFVDP+   +Y   +   P  H++LD N I+ +
Sbjct: 63  QQVPRGAL---GLRELYIRRHTEVHQMKFVDPISAFYYPNPTEVTP-SHLMLDRNYIWLS 118

Query: 127 QGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186
           QG  ++ +++D    E     T   H ARITCMRLFPL +  LFR + Q  E  LVTSS 
Sbjct: 119 QGLMVRRLRVD--CPEIELVETYKSHGARITCMRLFPLIDIPLFRGDSQTNEKALVTSSA 176

Query: 187 DHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG 246
           D ++RL WKG   RCF+GH+GPV+ LSDKLLGDG  K+LASGGED TVRLWS+S+ GK  
Sbjct: 177 DRTVRLCWKGH-SRCFRGHSGPVTALSDKLLGDGEFKLLASGGEDCTVRLWSMSTRGK-- 233

Query: 247 QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT--S 304
              L +T +GHEK + L+SVA HK  LLV+ SKDSKV++WDT    +  SS CVG T  S
Sbjct: 234 NHPLISTFHGHEKALSLLSVARHKPSLLVSCSKDSKVKLWDTMAPPSSGSSSCVGSTHLS 293

Query: 305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG 364
               P+ +KCHES+ YIA+GS V TIDLRTM+K    A+    + S  ++PS+ LICTG 
Sbjct: 294 TNSAPIAVKCHESLCYIAAGSEVTTIDLRTMKKASVLALRDHRILSCEMLPSEWLICTGI 353

Query: 365 IGKAMTWDIRRSQDAVKPQPMAELDGHVGS-VTQLHMDPYKIVTGGRDDLRINIWETDTG 423
             KA+ WDIR+SQ+   P  +AEL       VT LH+DPYK++TG   D ++++WET TG
Sbjct: 354 KNKALLWDIRKSQEL--PNIVAELQSESDEPVTFLHLDPYKVITGAPSDGQVHVWETQTG 411

Query: 424 MLANSLLCNYPEEADISTGCSAMAVSGCRIVTA-SYGEPGLLQFRDFSNATCPV-LKHEV 481
             AN+L C  P ++   +  SAMAV GCRI  A S  E  ++ +RDF  ++ PV L    
Sbjct: 412 HFANTLSCGEPAKSADRSTLSAMAVDGCRIAMAGSSAEVDMVHYRDFLMSSVPVSLPGNS 471

Query: 482 QNDSKFWGPQCY 493
           +  S+FWGPQ Y
Sbjct: 472 KEVSRFWGPQEY 483

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357125759|ref|XP_003564557.1| PREDICTED: ribosome assembly protein C18.05c-like [Brachypodium distachyon]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/499 (47%), Positives = 316/499 (63%), Gaps = 26/499 (5%)

Query: 13  PSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWP-QV 71
           P PS   + DL+ D +AHCA +L  +D++++AM+C+     AY D+VW RL+REQWP Q 
Sbjct: 5   PPPSGRTLVDLDGDVLAHCARHLGARDVASLAMACRPLHAAAYCDAVWYRLYREQWPFQQ 64

Query: 72  LVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFYS--VAKPHDHILLDNNDIFSTQG- 128
           +  G+L    +RE Y+ R   + Q KF DPL   +Y   +     H+LLD N +  +QG 
Sbjct: 65  VPCGAL---GLRELYIQRHTEVHQMKFDDPLSSIYYQNPIGSTPSHLLLDKNRVCFSQGP 121

Query: 129 -SSIQNI---KIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184
            + I N+    +DN L E+Y       H ARITCMRLFPL +T LFRS+    E  LVTS
Sbjct: 122 VAKILNVTLGSLDNELVETY-----RSHSARITCMRLFPLIDTPLFRSDTHTKEKALVTS 176

Query: 185 SCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244
           S D ++RL WKG C R +KGH+GPV+ L+DKLL DG  K+LA+GGED  +RLWS+S+  K
Sbjct: 177 STDRTVRLCWKG-CSRSYKGHSGPVTALADKLLCDGEFKVLATGGEDCAIRLWSMSTKAK 235

Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS 304
               +L +TL+GHEK + L+SVA HKS LLV+ SKDSKV+VWDT    +  SS CVG T 
Sbjct: 236 --SHSLISTLHGHEKTLSLLSVAWHKSSLLVSSSKDSKVKVWDTMAPPSSVSSSCVGGTH 293

Query: 305 V--PGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICT 362
           +   G P+ MKCH+S+ YIA+GS V  IDLRTM+K    A+C   + S  ++PS+ LICT
Sbjct: 294 LNSSGPPIAMKCHQSLCYIAAGSEVTAIDLRTMKKASVLALCNQRIISCEMLPSEWLICT 353

Query: 363 GGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDT 422
           G   KA+ WDIR+SQ+      +AEL    G VT LH+DPYK+VTG   D ++++WET T
Sbjct: 354 GVKDKALLWDIRKSQELA--NTVAELHSD-GPVTLLHLDPYKVVTGAPLDGQVHVWETQT 410

Query: 423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG-LLQFRDFSNATCPVLKHEV 481
           G L N+L C  P ++   T  SAMAV GCRI T      G LL +RDF +++ PV     
Sbjct: 411 GRLVNTLSCGEPGKSPGGTTVSAMAVDGCRIATTESSAEGILLHYRDFMSSSVPV-ALPG 469

Query: 482 QNDSKFWGPQCYSDTDCSD 500
           +  SKFWGPQ Y+D    D
Sbjct: 470 KEVSKFWGPQEYADGASED 488

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259489840|ref|NP_001158923.1| uncharacterized protein LOC100303822 [Zea mays] gi|194708122|gb|ACF88145.1| unknown [Zea mays]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/490 (45%), Positives = 307/490 (62%), Gaps = 16/490 (3%)

Query: 14  SPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLV 73
           +P    +ADL+ D +AHCA  L  +D++++AM+C+  +  AY D+VW RLFR+QWP   V
Sbjct: 3   APPVRTLADLDGDVLAHCAGYLGARDVASLAMACRPLRAAAYCDAVWYRLFRDQWPFEKV 62

Query: 74  SGSLPTVRVREAYLARRIALLQFKFVDPLDVCFY--SVAKPHDHILLDNNDIFSTQGSSI 131
                 + +RE Y+ R   + Q KF DP+   +Y         H+++D N I+  QG + 
Sbjct: 63  PCD--ALGLRELYIHRHTEIHQMKFGDPISALYYLDPAGTTPSHVMMDRNSIWFCQGPAA 120

Query: 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191
           + + ID  L E+    T  +H ARITC+RLFPL +T LFRS+ Q+ E  LVTSS D +IR
Sbjct: 121 KKLNID--LPETEIVETHRNHSARITCLRLFPLIDTPLFRSDTQKNEKALVTSSTDRTIR 178

Query: 192 LWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK 251
           L WKG   RC+KGH+ PV+ L+D+LL DG  K+LASGGED T+RLWS+S+  K     L 
Sbjct: 179 LCWKGY-SRCYKGHSAPVTALADRLLMDGESKLLASGGEDCTIRLWSMSTRAK--NHPLI 235

Query: 252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV-GMTSVPGVPV 310
           AT +GHEK +  +SVA HKS LLV+ SKDSKV+VWDT + S+  SSC      +  G P+
Sbjct: 236 ATFHGHEKALSFLSVAWHKSSLLVSCSKDSKVKVWDTVSPSSGSSSCVGSAHLNSNGPPI 295

Query: 311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMT 370
            MKCHES+ YIA+G+ V  IDLRTM+K    A+    + S  +MPS+ LICTG   +A+ 
Sbjct: 296 AMKCHESLCYIAAGAEVTAIDLRTMKKASVLALQNHRILSCEMMPSEWLICTGTKDRALL 355

Query: 371 WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL 430
           WDIR++Q+   P  +AE+    G VT LH+D YK+VTG   D ++++WET TG   N+L 
Sbjct: 356 WDIRKAQEL--PNTVAEMQSS-GPVTLLHLDQYKVVTGVPSDGQVHVWETRTGHSLNTLG 412

Query: 431 CNYPEEADISTGCSAMAVSGCRIVTASYGEPG-LLQFRDFSNATCPV--LKHEVQNDSKF 487
           C  P    + +  SAMAV GCRI  A     G +L +RDF+ A+ PV  L  + +  S+F
Sbjct: 413 CGEPSRLGVRSRVSAMAVDGCRIAMAGSSPEGCMLHYRDFATASAPVVSLPGKEKEVSRF 472

Query: 488 WGPQCYSDTD 497
           W PQ + D++
Sbjct: 473 WRPQEFDDSE 482

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	501
RGD|1310215	143	Taf5l "TAF5-like RNA polymeras	0.191	0.671	0.382	1.5e-10
MGI|MGI:1919039	589	Taf5l "TAF5-like RNA polymeras	0.321	0.273	0.313	2.1e-10
ZFIN|ZDB-GENE-030131-5987	601	taf5l "TAF5-like RNA polymeras	0.289	0.241	0.353	2.6e-10
UNIPROTKB|F1N575	585	TAF5L "Uncharacterized protein	0.273	0.234	0.333	2.6e-09
SGD|S000001308	640	MET30 "F-box protein containin	0.433	0.339	0.267	5e-09
UNIPROTKB|E1C8E9	560	TAF5L "Uncharacterized protein	0.261	0.233	0.337	5.2e-09
UNIPROTKB|E2RR78	607	TAF5L "Uncharacterized protein	0.265	0.219	0.335	7.7e-09
TAIR|locus:2028481	1187	SCD1 "STOMATAL CYTOKINESIS-DEF	0.431	0.181	0.285	9.1e-09
UNIPROTKB|F1RG42	589	TAF5L "Uncharacterized protein	0.265	0.225	0.335	9.4e-09
MGI|MGI:1918511	476	Poc1b "POC1 centriolar protein	0.459	0.483	0.248	1.1e-08

RGD|1310215 Taf5l "TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 44/115 (38%), Positives = 61/115 (53%)

Query:   187 DHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244
             D ++RLW   +G+  R F GH GPV +LS       +GK LAS GED  ++LW L+S   
Sbjct:     1 DKTVRLWSAQQGNSVRLFTGHRGPVLSLSFS----PNGKYLASAGEDQRLKLWDLASG-- 54

Query:   245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC 299
                  L   L GH   I  ++ +   S L+ + S D+ VRVWD      +RS+CC
Sbjct:    55 ----TLFKELRGHTDSITSLAFSPD-SGLIASASMDNSVRVWD------IRSTCC 98

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0030914 "STAGA complex" evidence=ISO

GO:0033276 "transcription factor TFTC complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0004402 "histone acetyltransferase activity" evidence=ISO

MGI|MGI:1919039 Taf5l "TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 59/188 (31%), Positives = 87/188 (46%)

Query:   120 NNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCM-RLFPL-----HETSLFRSE 173
             N  ++      + ++ I  F    Y+ +   D  AR+    R +PL     H   +   +
Sbjct:   376 NTVLYQGHAYPVWDVDISPF--SLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVK 433

Query:   174 PQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED 231
                  N L T S D ++RLW   +G+  R F GH GPV +LS       +GK LAS GED
Sbjct:   434 FHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFS----PNGKYLASAGED 489

Query:   232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS 291
               ++LW L+S        L   L GH   I  ++ +   S L+ + S D+ VRVWD    
Sbjct:   490 QRLKLWDLASG------TLFKELRGHTDSITSLAFSPD-SGLIASASMDNSVRVWD---- 538

Query:   292 SAVRSSCC 299
               +RS+CC
Sbjct:   539 --IRSTCC 544

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030914 "STAGA complex" evidence=ISO

GO:0033276 "transcription factor TFTC complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

ZFIN|ZDB-GENE-030131-5987 taf5l "TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor" [Danio rerio (taxid:7955)]

 Score = 180 (68.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 59/167 (35%), Positives = 82/167 (49%)

Query:   143 SYYRATLS-DHKARI-TCMRLFPL-----HETSLFRSEPQRTENVLVTSSCDHSIRLWW- 194
             S Y +T S D  AR+ +  R +PL     H + +   +     N + T S D ++RLW  
Sbjct:   408 SLYFSTASHDRTARLWSFARTYPLRLYAGHLSDVDCVKFHPNSNYIATGSTDKTVRLWST 467

Query:   195 -KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253
              +G+  R F GH GPV TL+       +GK LAS GED  ++LW L+S G      L   
Sbjct:   468 RQGASVRLFTGHRGPVLTLAFS----PNGKYLASAGEDQRLKLWDLASGG------LFKD 517

Query:   254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS--SAVRSSC 298
             L GH   I  +S +   S L+ + S D+ VRVWD   +  SA    C
Sbjct:   518 LRGHTDTISSLSFSQDSS-LVASASMDNTVRVWDIRNAHGSAPTDGC 563

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1N575 TAF5L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 52/156 (33%), Positives = 75/156 (48%)

Query:   144 YYRATLSDHKARITCM-RLFPL-----HETSLFRSEPQRTENVLVTSSCDHSIRLW--WK 195
             Y+ +   D  AR+    R +PL     H   +   +     N L T S D ++RLW   +
Sbjct:   394 YFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQ 453

Query:   196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255
             G+  R F GH GPV +L+       +GK LAS GED  ++LW L+S        L   L 
Sbjct:   454 GNSVRLFTGHRGPVLSLAFS----PNGKYLASAGEDQRLKLWDLASG------TLYKELR 503

Query:   256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS 291
             GH   I  ++ +   S L+ + S D+ VRVWD  +S
Sbjct:   504 GHTDNITSLTFSPDSS-LVASASMDNSVRVWDIRSS 538

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

SGD|S000001308 MET30 "F-box protein containing five copies of the WD40 motif" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 167 (63.8 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 68/254 (26%), Positives = 117/254 (46%)

Query:   181 LVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLG-DGSGKILASGGEDATVRLW 237
             L+T S D +IR+W    G C   ++GH       SD +L  D   K++ SG  D TV++W
Sbjct:   355 LITGSLDKTIRVWNYITGECISTYRGH-------SDSVLSVDSYQKVIVSGSADKTVKVW 407

Query:   238 SLSSSGKRGQQALKATLYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRS 296
              + S           TL GH + +  + +  H KSF   + S D+ +R+WD  T+S ++ 
Sbjct:   408 HVESR-------TCYTLRGHTEWVNCVKL--HPKSFSCFSCSDDTTIRMWDIRTNSCLKV 458

Query:   297 -SCCVGMTSVPGVPVDMKCHESMLY--IASGSSVVTIDLRT--MQKVMTPAICKPILHSF 351
                 VG      +P+ +K  E++     + GSS       T    +  TP+  +  +   
Sbjct:   459 FRGHVGQVQKI-IPLTIKDVENLATDNTSDGSSPQDDPTMTDGADESDTPSNEQETVLDE 517

Query:   352 SI-MPSKSLICTGGIGKAMT-WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGG 409
             +I  P+  L C  G+   +  WD++  +  ++ Q      GHV  V  +  D ++I++G 
Sbjct:   518 NIPYPTHLLSC--GLDNTIKLWDVKTGK-CIRTQ-----FGHVEGVWDIAADNFRIISGS 569

Query:   410 RDDLRINIWETDTG 423
              D   I +W+  +G
Sbjct:   570 HDG-SIKVWDLQSG 582

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IGI;IPI

GO:0000209 "protein polyubiquitination" evidence=IMP

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IGI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0043224 "nuclear SCF ubiquitin ligase complex" evidence=IDA

GO:0046685 "response to arsenic-containing substance" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IDA

GO:0000114 "regulation of transcription involved in G1 phase of mitotic cell cycle" evidence=IMP

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IMP

GO:0000087 "M phase of mitotic cell cycle" evidence=IMP

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IMP

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E1C8E9 TAF5L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 166 (63.5 bits), Expect = 5.2e-09, P = 5.2e-09
 Identities = 52/154 (33%), Positives = 73/154 (47%)

Query:   144 YYRATLSDHKARITCM-RLFPL-----H--ETSLFRSEPQRTENVLVTSSCDHSIRLW-- 193
             Y+ +   D  AR+    R +PL     H  +    +  P    N L T S D ++RLW  
Sbjct:   398 YFASASHDRTARLWSFDRTYPLRIYAGHLLDVDCVKFHPN--SNYLATGSTDKTVRLWST 455

Query:   194 WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253
              +G+  R F GH GPV  L+       +GK LAS GED  ++LW L+S        L   
Sbjct:   456 QQGNSVRLFTGHRGPVLALAFS----PNGKYLASAGEDQRLKLWDLASG------TLYKE 505

Query:   254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
             L GH   I  ++ +   S L+ + S D+ VRVWD
Sbjct:   506 LRGHTDNITSLTFSPDSS-LIASASMDNSVRVWD 538

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

UNIPROTKB|E2RR78 TAF5L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 165 (63.1 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 51/152 (33%), Positives = 73/152 (48%)

Query:   144 YYRATLSDHKARITCM-RLFPL-----HETSLFRSEPQRTENVLVTSSCDHSIRLW--WK 195
             Y+ +   D  AR+    R +PL     H   +   +     N L T S D ++RLW   +
Sbjct:   416 YFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQ 475

Query:   196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255
             G+  R F GH GPV +L+       +GK LAS GED  ++LW L+S        L   L 
Sbjct:   476 GNSVRLFTGHRGPVLSLAFS----PNGKYLASAGEDQRLKLWDLASG------TLYKELR 525

Query:   256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
             GH   I  ++ +   S L+ + S D+ VRVWD
Sbjct:   526 GHTDNITSLTFSPDSS-LIASASMDNSVRVWD 556

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2028481 SCD1 "STOMATAL CYTOKINESIS-DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 9.1e-09, P = 9.1e-09
 Identities = 69/242 (28%), Positives = 96/242 (39%)

Query:   200 RCFKGHNGPVSTLSD-------KLLGDGSGK-ILASGGEDATVRLWSLSSSGKRGQQALK 251
             R  KGH G V+ L          L+GD        SG  D  V++W  S    RG + L+
Sbjct:   837 RVLKGHGGAVTALHSVTRREVCDLVGDREDAGFFISGSTDCLVKIWDPSL---RGSE-LR 892

Query:   252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD 311
             ATL GH   ++ +S    K   +V+ S D  V VWD  T+  +      G  S     V 
Sbjct:   893 ATLKGHTGTVRAISSDRGK---IVSGSDDLSVIVWDKQTTQLLEE--LKGHDSQVSC-VK 946

Query:   312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMT 370
             M   E +L  A   +V   D+RT   V T   C   + S     S  ++   G    A  
Sbjct:   947 MLSGERVLTAAHDGTVKMWDVRTDMCVATVGRCSSAILSLEYDDSTGILAAAGRDTVANI 1006

Query:   371 WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL 430
             WDIR  +       M +L GH   +  + M    ++TG  DD    +W    G     L 
Sbjct:  1007 WDIRSGKQ------MHKLKGHTKWIRSIRMVEDTLITGS-DDWTARVWSVSRGSCDAVLA 1059

Query:   431 CN 432
             C+
Sbjct:  1060 CH 1061

GO:0005634 "nucleus" evidence=ISM

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA;IMP

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0010052 "guard cell differentiation" evidence=IMP

GO:0010235 "guard mother cell cytokinesis" evidence=IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

UNIPROTKB|F1RG42 TAF5L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 9.4e-09, P = 9.4e-09
 Identities = 51/152 (33%), Positives = 73/152 (48%)

Query:   144 YYRATLSDHKARITCM-RLFPL-----HETSLFRSEPQRTENVLVTSSCDHSIRLW--WK 195
             Y+ +   D  AR+    R +PL     H   +   +     N L T S D ++RLW   +
Sbjct:   398 YFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQ 457

Query:   196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255
             G+  R F GH GPV +L+       +GK LAS GED  ++LW L+S        L   L 
Sbjct:   458 GNSVRLFTGHRGPVLSLAFS----PNGKYLASAGEDQRLKLWDLASG------TLFKELR 507

Query:   256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
             GH   I  ++ +   S L+ + S D+ VRVWD
Sbjct:   508 GHTDNITSLTFSPDSS-LIASASMDNSVRVWD 538

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 65/262 (24%), Positives = 116/262 (44%)

Query:   167 TSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGK 223
             TSL +  PQ   N+L ++S D ++RLW    KG     FK H  PV ++         G+
Sbjct:    64 TSL-QFSPQG--NLLASASRDRTVRLWVLDRKGKSSE-FKAHTAPVRSVDFS----ADGQ 115

Query:   224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV 283
             +L +  ED ++++WS+       +Q    +LY H   ++    +     L+V+ S+D  +
Sbjct:   116 LLVTASEDKSIKVWSMF------RQRFLYSLYRHTHWVRCAKFSPDGR-LIVSCSEDKTI 168

Query:   284 RVWDTSTSSAVRS-SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI-DLRTMQKVMTP 341
             ++WDT+    V + S  VG  +     VD   + + +  A     V I D+R  + +   
Sbjct:   169 KIWDTTNKQCVNNFSDSVGFANF----VDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHY 224

Query:   342 AICKPILHSFSIMP-SKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSV-TQLH 399
              +    ++  S  P   SL+     G     D+      ++ + +  L GH G V T   
Sbjct:   225 QVHSCGVNCLSFHPLGNSLVTASSDGTVKMLDL------IEGRLIYTLQGHTGPVFTVSF 278

Query:   400 MDPYKIVTGGRDDLRINIWETD 421
                 +++T G  D ++ IW T+
Sbjct:   279 SKDGELLTSGGADAQVLIWRTN 300

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0030030 "cell projection organization" evidence=IEA

GO:0042384 "cilium assembly" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00170337 f-box family protein (498 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	501
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-25
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-04
pfam12937	47	pfam12937, F-box-like, F-box-like	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  105 bits (264), Expect = 2e-25
 Identities = 81/325 (24%), Positives = 126/325 (38%), Gaps = 59/325 (18%)

Query: 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFK 203
           R TL  H   +TC+   P                +L T S D +I++W    G   R  K
Sbjct: 2   RRTLKGHTGGVTCVAFSPDG-------------KLLATGSGDGTIKVWDLETGELLRTLK 48

Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263
           GH GPV  ++        G  LASG  D T+RLW L +           TL GH   +  
Sbjct: 49  GHTGPVRDVAA----SADGTYLASGSSDKTIRLWDLETG------ECVRTLTGHTSYV-- 96

Query: 264 MSVAGHKS-FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKC---HESML 319
            SVA      +L + S+D  ++VWD  T   +        T++ G    +          
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGKCL--------TTLRGHTDWVNSVAFSPDGT 148

Query: 320 YIASGSSVVTI---DLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI-GKAMTWDIRR 375
           ++AS S   TI   DLRT + V T       ++S +  P    + +    G    WD+  
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS- 207

Query: 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP 434
                  + +  L GH   V  +   P   ++  G +D  I +W+  TG    +L  +  
Sbjct: 208 -----TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-- 260

Query: 435 EEADISTGCSAMAVS--GCRIVTAS 457
                +   +++A S  G R+ + S
Sbjct: 261 -----TNSVTSLAWSPDGKRLASGS 280

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 60/277 (21%), Positives = 98/277 (35%), Gaps = 80/277 (28%)

Query: 148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGH 205
           TL+ H + ++ +   P                +L +SS D +I++W    G C    +GH
Sbjct: 88  TLTGHTSYVSSVAFSPDGR-------------ILSSSSRDKTIKVWDVETGKCLTTLRGH 134

Query: 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS 265
              V++++        G  +AS  +D T++LW L +          ATL GH   +   S
Sbjct: 135 TDWVNSVA----FSPDGTFVASSSQDGTIKLWDLRTGK------CVATLTGHTGEV--NS 182

Query: 266 VAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG 324
           VA       L++ S D  +++WD ST   +                              
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCL-----------------------GTLRGHE 219

Query: 325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI-GKAMTWDIRRSQDAVKPQ 383
           + V ++                     +  P   L+ +G   G    WD+R        +
Sbjct: 220 NGVNSV---------------------AFSPDGYLLASGSEDGTIRVWDLR------TGE 252

Query: 384 PMAELDGHVGSVTQLHMDP-YKIVTGGRDDLRINIWE 419
            +  L GH  SVT L   P  K +  G  D  I IW+
Sbjct: 253 CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.7 bits (184), Expect = 7e-15
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 26/150 (17%)

Query: 140 LSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGS 197
           L      ATL+ H   +  +   P                 L++SS D +I+LW    G 
Sbjct: 164 LRTGKCVATLTGHTGEVNSVAFSP-------------DGEKLLSSSSDGTIKLWDLSTGK 210

Query: 198 CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257
           C    +GH   V++++        G +LASG ED T+R+W L +           TL GH
Sbjct: 211 CLGTLRGHENGVNSVAF----SPDGYLLASGSEDGTIRVWDLRT------GECVQTLSGH 260

Query: 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
              +  ++ +      L + S D  +R+WD
Sbjct: 261 TNSVTSLAWSPDGKR-LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.8 bits (177), Expect = 1e-13
 Identities = 84/374 (22%), Positives = 137/374 (36%), Gaps = 42/374 (11%)

Query: 120 NNDIFSTQGSSIQNIKIDNFLSESYYR-ATLSDHKARITCMRLFPLHETSLFRSEPQRTE 178
            +   S  G  +  +  D+ +S        L  H+  IT +   P               
Sbjct: 31  LSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSP-------------DG 77

Query: 179 NVLVTSSCDHSIRLW---WKGSCQRCFKG-HNGPVSTLSDKLLGDGSGKILASGGEDATV 234
            +L++ S D +I+LW         +  +G H+  VS L+     DG+  +LAS   D TV
Sbjct: 78  ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS-PDGNSILLASSSLDGTV 136

Query: 235 RLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV 294
           +LW LS+ GK     L  TL GH + +  ++ +     L    S D  +++WD  T   +
Sbjct: 137 KLWDLSTPGK-----LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191

Query: 295 RSSCCVGMTSVPGVPVDMKCHESMLYIASGS---SVVTIDLRTMQKVMTPAICKPILHSF 351
            +           V       +  L IASGS   ++   DL T + + +           
Sbjct: 192 STL----AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247

Query: 352 SIMP-SKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-YKIVTGG 409
           S  P    L      G    WD+R S        +  L GH  SV  +   P  K++  G
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSS-----SLLRTLSGHSSSVLSVAFSPDGKLLASG 302

Query: 410 RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469
             D  + +W+ +TG L +SL     E         + +  G  +V+    + G ++  D 
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLKGHEG---PVSSLSFSPDGSLLVS-GGSDDGTIRLWDL 358

Query: 470 SNATCPVLKHEVQN 483
                        N
Sbjct: 359 RTGKPLKTLEGHSN 372

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 32/212 (15%)

Query: 250 LKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP 309
           L+ TL GH   +  ++ +     LL T S D  ++VWD  T   +R+            P
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRTLK------GHTGP 53

Query: 310 VD--MKCHESMLYIASGSSVVTI---DLRTMQKVMT-PAICKPILHSFSIMPSKSLICTG 363
           V       +   Y+ASGSS  TI   DL T + V T       +  S +  P   ++ + 
Sbjct: 54  VRDVAASADGT-YLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSS 111

Query: 364 GI-GKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD 421
                   WD+         + +  L GH   V  +   P    V     D  I +W+  
Sbjct: 112 SRDKTIKVWDVE------TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165

Query: 422 TGMLANSL---------LCNYPEEADISTGCS 444
           TG    +L         +   P+   + +  S
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 22/122 (18%)

Query: 119 DNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE 178
           D   + S   SS   IK+ +  +      TL  H+  +  +   P               
Sbjct: 188 DGEKLLS--SSSDGTIKLWDLSTGKCL-GTLRGHENGVNSVAFSP-------------DG 231

Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
            +L + S D +IR+W    G C +   GH   V++L+        GK LASG  D T+R+
Sbjct: 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLA----WSPDGKRLASGSADGTIRI 287

Query: 237 WS 238
           W 
Sbjct: 288 WD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.9 bits (128), Expect = 9e-08
 Identities = 57/219 (26%), Positives = 88/219 (40%), Gaps = 37/219 (16%)

Query: 119 DNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE 178
           D + + S  GSS   I++ +  S S    TLS H + +  +   P               
Sbjct: 252 DGSLLAS--GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-------------DG 296

Query: 179 NVLVTSSCDHSIRLWWKGSCQRC----FKGHNGPVSTLSDKLLGDGSGKILASGGEDATV 234
            +L + S D ++RLW   + +       KGH GPVS+LS          +++ G +D T+
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS---FSPDGSLLVSGGSDDGTI 353

Query: 235 RLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSA 293
           RLW L +            L   E    ++SV+      ++ + S D  VR+WD ST S 
Sbjct: 354 RLWDLRTGK---------PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404

Query: 294 VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL 332
           +R+                        +ASGSS  TI L
Sbjct: 405 LRNLDGHTSRVTSLDF-----SPDGKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238
           G   R  KGH GPV++++        G +LASG +D TVR+W 
Sbjct: 1   GKLLRTLKGHTGPVTSVA----FSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 195 KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238
            G   +  KGH GPV++++        GK LASG +D T++LW 
Sbjct: 1   SGELLKTLKGHTGPVTSVAF----SPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 22/156 (14%)

Query: 141 SESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQR 200
            +     TL  H+  ++ +   P                ++   S D +IRLW      +
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSP------------DGSLLVSGGSDDGTIRLW-DLRTGK 362

Query: 201 CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP 260
             K   G  + LS     DG  ++++SG  D TVRLW LS+       +L   L GH   
Sbjct: 363 PLKTLEGHSNVLSVSFSPDG--RVVSSGSTDGTVRLWDLSTG------SLLRNLDGHTSR 414

Query: 261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           +  +  +      L + S D+ +R+WD  TS    S
Sbjct: 415 VTSLDFS-PDGKSLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 202 FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQAL--KATLYGHEK 259
            KGH   +  L          +ILASG ED T+R+W +  + +  ++    +  L GH+K
Sbjct: 70  LKGHTSSILDLQ---FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126

Query: 260 PIKLMSVAGHKSFLLVTISKDSKVRVWD 287
            I ++       +++ +   DS V +WD
Sbjct: 127 KISIIDWNPMNYYIMCSSGFDSFVNIWD 154

Length = 568

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 35 LSLQDISNMAMSCKLFKHVAYSDSVWQRLFR 65
          L  +D+  +A+ C+ ++ +A  DS+W+RL  
Sbjct: 16 LDPRDLLRLALVCRRWRELASDDSLWRRLCL 46

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	501
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	99.98
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.98
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.87
KOG0649	325	consensus WD40 repeat protein [General function pr	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG4227	609	consensus WD40 repeat protein [General function pr	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG1334	559	consensus WD40 repeat protein [General function pr	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG1963	792	consensus WD40 repeat protein [General function pr	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.81
KOG1963	792	consensus WD40 repeat protein [General function pr	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
COG2319	466	FOG: WD40 repeat [General function prediction only	99.78
KOG0649	325	consensus WD40 repeat protein [General function pr	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG1310	758	consensus WD40 repeat protein [General function pr	99.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.77
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.76
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.72
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.7
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.7
KOG2321	703	consensus WD40 repeat protein [General function pr	99.7
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.69
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.69
PRK01742	429	tolB translocation protein TolB; Provisional	99.69
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.67
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.65
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.64
KOG2139	445	consensus WD40 repeat protein [General function pr	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.63
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.62
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.62
PRK11028	330	6-phosphogluconolactonase; Provisional	99.61
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.6
KOG2315	566	consensus Predicted translation initiation factor	99.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.6
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.53
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.51
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.5
PRK04922	433	tolB translocation protein TolB; Provisional	99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.5
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.5
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.49
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.49
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.48
PRK04922	433	tolB translocation protein TolB; Provisional	99.47
PRK03629	429	tolB translocation protein TolB; Provisional	99.46
PRK02889	427	tolB translocation protein TolB; Provisional	99.45
KOG2139	445	consensus WD40 repeat protein [General function pr	99.45
KOG2321	703	consensus WD40 repeat protein [General function pr	99.44
PRK02889	427	tolB translocation protein TolB; Provisional	99.43
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.42
PRK05137	435	tolB translocation protein TolB; Provisional	99.4
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.4
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.36
KOG2314	698	consensus Translation initiation factor 3, subunit	99.35
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.33
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.31
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.28
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.26
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.26
PRK00178	430	tolB translocation protein TolB; Provisional	99.25
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.25
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.24
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.23
PRK04792	448	tolB translocation protein TolB; Provisional	99.23
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.23
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.23
PRK04792	448	tolB translocation protein TolB; Provisional	99.21
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.21
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.21
KOG4547	541	consensus WD40 repeat-containing protein [General	99.2
PRK00178	430	tolB translocation protein TolB; Provisional	99.19
KOG4547	541	consensus WD40 repeat-containing protein [General	99.18
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.16
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.16
PRK01029	428	tolB translocation protein TolB; Provisional	99.15
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.14
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.13
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.13
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.12
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.11
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.06
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	99.06
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.05
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.04
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.03
PRK01029	428	tolB translocation protein TolB; Provisional	99.02
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.02
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.0
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.99
KOG2315	566	consensus Predicted translation initiation factor	98.98
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.98
COG4946	668	Uncharacterized protein related to the periplasmic	98.97
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.96
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.96
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.94
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.92
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.91
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.91
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.89
KOG3621	726	consensus WD40 repeat-containing protein [General	98.87
KOG2314	698	consensus Translation initiation factor 3, subunit	98.85
KOG2695	425	consensus WD40 repeat protein [General function pr	98.83
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.82
KOG2695	425	consensus WD40 repeat protein [General function pr	98.81
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.8
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.8
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.8
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.77
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.77
COG4946	668	Uncharacterized protein related to the periplasmic	98.76
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.73
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.73
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.72
PRK04043	419	tolB translocation protein TolB; Provisional	98.7
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.66
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.65
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.63
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.62
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.6
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.6
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.57
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.52
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.49
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.49
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.48
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.32
KOG2997	366	consensus F-box protein FBX9 [General function pre	98.3
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.29
KOG3621	726	consensus WD40 repeat-containing protein [General	98.28
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.26
PRK04043	419	tolB translocation protein TolB; Provisional	98.22
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.18
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.16
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.14
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.12
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.05
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.05
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.05
PRK02888	635	nitrous-oxide reductase; Validated	98.05
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	98.04
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.03
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.03
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.99
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.99
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.96
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.91
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.88
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.83
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.82
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.81
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.78
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.77
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.76
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.74
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.74
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.71
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.69
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.69
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.64
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.62
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.54
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.45
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.44
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.42
KOG2395	644	consensus Protein involved in vacuole import and d	97.34
KOG3926	332	consensus F-box proteins [Amino acid transport and	97.33
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.28
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.28
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.28
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.27
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.25
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.24
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.22
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.18
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.15
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.13
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.11
KOG4341	483	consensus F-box protein containing LRR [General fu	97.03
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.01
KOG2444	238	consensus WD40 repeat protein [General function pr	96.91
PHA02713	557	hypothetical protein; Provisional	96.9
PHA02713	557	hypothetical protein; Provisional	96.8
PRK02888	635	nitrous-oxide reductase; Validated	96.8
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.64
KOG2444	238	consensus WD40 repeat protein [General function pr	96.64
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.56
COG3391	381	Uncharacterized conserved protein [Function unknow	96.55
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.41
PF06881	109	Elongin_A: RNA polymerase II transcription factor	96.41
KOG2395	644	consensus Protein involved in vacuole import and d	96.4
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.37
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.36
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.28
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.23
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.22
PHA03098	534	kelch-like protein; Provisional	96.07
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.05
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.84
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.82
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.7
PHA03098	534	kelch-like protein; Provisional	95.65
PF13013	109	F-box-like_2: F-box-like domain	95.62
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.53
COG3391	381	Uncharacterized conserved protein [Function unknow	95.5
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.39
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.3
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.25
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.09
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.06
COG5276	370	Uncharacterized conserved protein [Function unknow	95.05
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.84
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.78
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.75
PRK13616	591	lipoprotein LpqB; Provisional	94.61
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.58
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.55
PHA02790	480	Kelch-like protein; Provisional	94.47
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.44
PHA02790	480	Kelch-like protein; Provisional	94.4
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.4
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.09
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.08
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.02
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.62
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	93.23
COG4590	733	ABC-type uncharacterized transport system, permeas	93.13
PRK13616	591	lipoprotein LpqB; Provisional	93.03
COG5167	776	VID27 Protein involved in vacuole import and degra	93.02
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.87
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.74
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	92.73
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.67
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.55
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.96
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.79
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.59
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	90.74
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.72
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.72
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.51
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.46
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.32
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.14
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.99
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.15
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.11
COG5167	776	VID27 Protein involved in vacuole import and degra	89.06
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.89
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	88.78
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.7
PRK13684	334	Ycf48-like protein; Provisional	88.69
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.47
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.38
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.29
COG5276	370	Uncharacterized conserved protein [Function unknow	88.12
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.08
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	87.88
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	87.76
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.56
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.43
PRK10115	686	protease 2; Provisional	86.78
PRK10115	686	protease 2; Provisional	86.61
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	86.48
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	86.24
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.23
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.86
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.33
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	84.76
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.53
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.5
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	84.05
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	82.97
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	82.8
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	82.44
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	82.38
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	82.24
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	82.1
KOG3616	1636	consensus Selective LIM binding factor [Transcript	82.07
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	81.68
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.42
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	80.89
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	80.55
PF12768	281	Rax2: Cortical protein marker for cell polarity	80.13

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.5e-54  Score=363.64  Aligned_cols=329  Identities=19%  Similarity=0.266  Sum_probs=279.9

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      .+.+|..+|-|++|+|+|..+|+|+-|.++++||..+. .+..+.++|...|.|++|+|             ||..||+|
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsP-------------Dgk~iASG  175 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSP-------------DGKKIASG  175 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-CcceeecCCccEEEEEEECC-------------Ccchhhcc
Confidence            34557778999999999999999999999999999994 89999999999999999999             89999999


Q ss_pred             eCCCceEEec--CCce-eeeccCCCCceEEEEeeecC-CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784          185 SCDHSIRLWW--KGSC-QRCFKGHNGPVSTLSDKLLG-DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP  260 (501)
Q Consensus       185 ~~dg~i~vwd--~~~~-~~~~~~h~~~v~~l~~s~~~-~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  260 (501)
                      +.||+|++||  ++++ ...+.+|...|++++|.|.. .+..++|++++.||.|+|||+..+.      ++..+.+|+.+
T Consensus       176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~------~~~~lsgHT~~  249 (480)
T KOG0271|consen  176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT------CVRTLSGHTAS  249 (480)
T ss_pred             ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce------EEEEeccCccc
Confidence            9999999999  5554 47899999999999998733 5667799999999999999999876      58899999999


Q ss_pred             eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc----cce-------------ecCCCc-e------------
Q 010784          261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV----GMT-------------SVPGVP-V------------  310 (501)
Q Consensus       261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~----~~~-------------~~~~~~-~------------  310 (501)
                      |+|++|-  +..++++|+.|++|++|+...+...+...--    ...             .+.+.. .            
T Consensus       250 VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r  327 (480)
T KOG0271|consen  250 VTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER  327 (480)
T ss_pred             eEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence            9999996  5679999999999999999987654432210    000             000000 0            


Q ss_pred             ---eeecCCCeEEEEeCC-cEEEEEcCCC-ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCC
Q 010784          311 ---DMKCHESMLYIASGS-SVVTIDLRTM-QKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQP  384 (501)
Q Consensus       311 ---~~~~~~~~~~~~~~~-~i~~~d~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~  384 (501)
                         .....+..++.++++ ++.+|+.... +++..+.+|...|+.+.|+||++++++++-|+ |++||.++++.+     
T Consensus       328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l-----  402 (480)
T KOG0271|consen  328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL-----  402 (480)
T ss_pred             HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh-----
Confidence               001112234444443 8999987654 47788999999999999999999999999999 999999998876     


Q ss_pred             cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCce
Q 010784          385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGL  463 (501)
Q Consensus       385 ~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~  463 (501)
                       .+|.+|-..|+.++|+.+ +++++||.|.++++|++++.++...+     .+|...|.++.|+|||..+++|+  .|..
T Consensus       403 -asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL-----pGh~DEVf~vDwspDG~rV~sgg--kdkv  474 (480)
T KOG0271|consen  403 -ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL-----PGHADEVFAVDWSPDGQRVASGG--KDKV  474 (480)
T ss_pred             -hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC-----CCCCceEEEEEecCCCceeecCC--CceE
Confidence             999999999999999999 99999999999999999999999999     67889999999999999999999  5699


Q ss_pred             EEEee
Q 010784          464 LQFRD  468 (501)
Q Consensus       464 i~~w~  468 (501)
                      +++|.
T Consensus       475 ~~lw~  479 (480)
T KOG0271|consen  475 LRLWR  479 (480)
T ss_pred             EEeec
Confidence            99995

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8e-52  Score=346.44  Aligned_cols=375  Identities=21%  Similarity=0.288  Sum_probs=302.5

Q ss_pred             CCCccccccc----HHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhh---------------cCccc---
Q 010784           15 PSTTAIADLN----EDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQ---------------WPQVL---   72 (501)
Q Consensus        15 ~~~~~~~~Lp----~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~---------------~~~~~---   72 (501)
                      ...+++..||    +++.+.||+|||+.+|+.|..|||.|+++..+..+||+++.+.               |.+.+   
T Consensus        70 LqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~  149 (499)
T KOG0281|consen   70 LQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKN  149 (499)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccC
Confidence            3467888899    9999999999999999999999999999999999999988766               11111   


Q ss_pred             --cC-CCCC----cchhHHHHHHHHHHhhhccccCCeeeEEEe---cCCCCceEEeeCCcEEEeecCCeeeEEEEecccc
Q 010784           73 --VS-GSLP----TVRVREAYLARRIALLQFKFVDPLDVCFYS---VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE  142 (501)
Q Consensus        73 --~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~  142 (501)
                        +. ++..    ..-+...+.....-..+|+.++-....+..   ..+.|.|+.++.  ..+++|..|++|+|||..+ 
T Consensus       150 r~~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~skgVYClQYDD--~kiVSGlrDnTikiWD~n~-  226 (499)
T KOG0281|consen  150 RPNDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNS-  226 (499)
T ss_pred             CCCcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccCCceEEEEecc--hhhhcccccCceEEecccc-
Confidence              00 1111    111223333333445678888776654444   344588888875  5789999999999999998 


Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~  220 (501)
                      ..+.+.+.||++.|.|+.|.               .+.+++|+.|.+|+|||  +++++.++-+|...|..+.|+     
T Consensus       227 ~~c~~~L~GHtGSVLCLqyd---------------~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-----  286 (499)
T KOG0281|consen  227 LECLKILTGHTGSVLCLQYD---------------ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-----  286 (499)
T ss_pred             HHHHHhhhcCCCcEEeeecc---------------ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-----
Confidence            58999999999999999995               57999999999999999  999999999999999999995     


Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                       +.++++++.|.++.+||+....   ...+...+.+|...|+.+.|+   .+++++++.|.+|++|++.+++        
T Consensus       287 -ng~mvtcSkDrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~e--------  351 (499)
T KOG0281|consen  287 -NGYMVTCSKDRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCE--------  351 (499)
T ss_pred             -CCEEEEecCCceeEEEeccCch---HHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEecccee--------
Confidence             4699999999999999998754   244667789999999999995   4599999999999999998874        


Q ss_pred             cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                                                          .++++.+|...|.|+.+  .++++++|+.|. |++||+..+.++
T Consensus       352 ------------------------------------fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL  393 (499)
T KOG0281|consen  352 ------------------------------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL  393 (499)
T ss_pred             ------------------------------------eehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHH
Confidence                                                34567789999998877  789999999999 999999998776


Q ss_pred             CCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCccccc----ccccCCCCCCCcceeeeEeeccccEEEE
Q 010784          380 VKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLAN----SLLCNYPEEADISTGCSAMAVSGCRIVT  455 (501)
Q Consensus       380 ~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~s  455 (501)
                            ..++||+.-|.++.|+..+++. |..||+|++||+.++...+    ++.......|++.|..+.|  |...|++
T Consensus       394 ------RvLeGHEeLvRciRFd~krIVS-GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvs  464 (499)
T KOG0281|consen  394 ------RVLEGHEELVRCIRFDNKRIVS-GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIIS  464 (499)
T ss_pred             ------HHHhchHHhhhheeecCceeee-ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEe
Confidence                  9999999999999998766554 5699999999998764321    1111112567889999888  6778888


Q ss_pred             eecCCCceEEEeeccCCccce
Q 010784          456 ASYGEPGLLQFRDFSNATCPV  476 (501)
Q Consensus       456 ~~~d~~g~i~~w~~~~~~~~~  476 (501)
                      ++  +|.+|.+|||.++....
T Consensus       465 ss--HddtILiWdFl~~~~~~  483 (499)
T KOG0281|consen  465 SS--HDDTILIWDFLNGPPSA  483 (499)
T ss_pred             cc--CCCeEEEEEcCCCCccc
Confidence            88  77999999998876543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-48  Score=329.91  Aligned_cols=308  Identities=20%  Similarity=0.301  Sum_probs=272.3

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~  220 (501)
                      .++...+.||.++|.|++|+|             +|..|+||+.|.++++||  +.....+.++|..-|.|++|+    |
T Consensus       105 trCssS~~GH~e~Vl~~~fsp-------------~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvaws----P  167 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSP-------------TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWS----P  167 (480)
T ss_pred             ceeccccCCCCCcEEEEEecC-------------CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEEC----C
Confidence            466678899999999999999             899999999999999999  888899999999999999997    8


Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec----CCeEEEEEeCCCeEEEEECCCCccccc
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH----KSFLLVTISKDSKVRVWDTSTSSAVRS  296 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~~l~s~s~dg~v~vwd~~~~~~~~~  296 (501)
                      ||+.|++|+.||+|++||..++++     ....+.+|...|++++|.|-    ...+|++++.||.|+|||+..++.+..
T Consensus       168 Dgk~iASG~~dg~I~lwdpktg~~-----~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~  242 (480)
T KOG0271|consen  168 DGKKIASGSKDGSIRLWDPKTGQQ-----IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT  242 (480)
T ss_pred             CcchhhccccCCeEEEecCCCCCc-----ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence            999999999999999999999986     77889999999999999873    456899999999999999998854332


Q ss_pred             eecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEeeeccCCCcEEEEEEc-----------CCC------
Q 010784          297 SCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMTPAICKPILHSFSIM-----------PSK------  357 (501)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~-----------~~~------  357 (501)
                      .     ..+...+.++.+.+.+++....  .+|++|+...+.....+++|...|+.++++           |.+      
T Consensus       243 l-----sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  243 L-----SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             e-----ccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence            2     1566678888888666555443  499999999999999999999999999887           222      


Q ss_pred             -------------------cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784          358 -------------------SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN  416 (501)
Q Consensus       358 -------------------~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~  416 (501)
                                         +.+++|++|. +.+|+-...+     +++..+.+|..-|+.+.|+|+ +++|++|.|..|+
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVk  392 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-----KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVK  392 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-----cchhhhhchhhheeeEEECCCccEEEEeeccccee
Confidence                               3599999999 9999987654     457889999999999999999 9999999999999


Q ss_pred             EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc---------------------CCccc
Q 010784          417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS---------------------NATCP  475 (501)
Q Consensus       417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~---------------------~~~~~  475 (501)
                      +||-++|+.+.+|     .+|...|..++|+.|.++|++|+  .|.++++|++.                     +++.+
T Consensus       393 LW~g~tGk~lasf-----RGHv~~VYqvawsaDsRLlVS~S--kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r  465 (480)
T KOG0271|consen  393 LWDGRTGKFLASF-----RGHVAAVYQVAWSADSRLLVSGS--KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR  465 (480)
T ss_pred             eeeCCCcchhhhh-----hhccceeEEEEeccCccEEEEcC--CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCce
Confidence            9999999999999     67889999999999999999999  66999999854                     56677


Q ss_pred             eeecCCCCceeeec
Q 010784          476 VLKHEVQNDSKFWG  489 (501)
Q Consensus       476 ~~s~~~d~~~~~w~  489 (501)
                      +++|+.|..+++|.
T Consensus       466 V~sggkdkv~~lw~  479 (480)
T KOG0271|consen  466 VASGGKDKVLRLWR  479 (480)
T ss_pred             eecCCCceEEEeec
Confidence            88999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.7e-48  Score=334.60  Aligned_cols=282  Identities=23%  Similarity=0.293  Sum_probs=261.0

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      .....|+..+.|+.++..+|||+-+|.++||+..+. ..+.+|.||.+.|.++.|+|..           ++..+|||+.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~-----------~~~~lat~s~  239 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVD-----------SDLNLATASA  239 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCC-----------Cccceeeecc
Confidence            446778999999999999999999999999999986 8899999999999999999941           3679999999


Q ss_pred             CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          187 DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       187 dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      ||++++|+  ....+..+.+|...|..++|+    |+|++|+|++.|.+-++||++++..      +....+|...|.++
T Consensus       240 Dgtvklw~~~~e~~l~~l~gH~~RVs~VafH----PsG~~L~TasfD~tWRlWD~~tk~E------lL~QEGHs~~v~~i  309 (459)
T KOG0272|consen  240 DGTVKLWKLSQETPLQDLEGHLARVSRVAFH----PSGKFLGTASFDSTWRLWDLETKSE------LLLQEGHSKGVFSI  309 (459)
T ss_pred             CCceeeeccCCCcchhhhhcchhhheeeeec----CCCceeeecccccchhhcccccchh------hHhhccccccccee
Confidence            99999998  557889999999999999998    8999999999999999999999874      67778999999999


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC  344 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  344 (501)
                      +|.+ +|.+++||+.|..-+|||++++                                            .++..+.+|
T Consensus       310 af~~-DGSL~~tGGlD~~~RvWDlRtg--------------------------------------------r~im~L~gH  344 (459)
T KOG0272|consen  310 AFQP-DGSLAATGGLDSLGRVWDLRTG--------------------------------------------RCIMFLAGH  344 (459)
T ss_pred             EecC-CCceeeccCccchhheeecccC--------------------------------------------cEEEEeccc
Confidence            9998 8999999999999999999887                                            456678899


Q ss_pred             CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCC
Q 010784          345 KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       345 ~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~  421 (501)
                      ..+|.+|+|+|+|..+++|+.|+ ++|||++..+.+      .++.+|.+-|+.+.|+|.  .+++++|.|++++||...
T Consensus       345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l------y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL------YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             ccceeeEeECCCceEEeecCCCCcEEEeeecccccc------eecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence            99999999999999999999999 999999997654      899999999999999996  999999999999999999


Q ss_pred             CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      ++++++++     .+|.+.|.++.+++|+.+|++++.|  .++++|.
T Consensus       419 ~~~~~ksL-----aGHe~kV~s~Dis~d~~~i~t~s~D--RT~KLW~  458 (459)
T KOG0272|consen  419 TWSPLKSL-----AGHEGKVISLDISPDSQAIATSSFD--RTIKLWR  458 (459)
T ss_pred             Ccccchhh-----cCCccceEEEEeccCCceEEEeccC--ceeeecc
Confidence            99999999     7888999999999999999999955  9999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.1e-42  Score=282.46  Aligned_cols=285  Identities=16%  Similarity=0.245  Sum_probs=255.4

Q ss_pred             eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      .+..+..|...|.++.|++|.+++++++.||.+.|||.-+. ...+.++-....|..++|+|             .|+++
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~s~WVMtCA~sP-------------Sg~~V  112 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIPLPSSWVMTCAYSP-------------SGNFV  112 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc-cceeEEecCceeEEEEEECC-------------CCCeE
Confidence            34667778888999999999999999999999999999885 66677778889999999999             89999


Q ss_pred             EEeeCCCceEEec-C-C------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784          182 VTSSCDHSIRLWW-K-G------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       182 ~s~~~dg~i~vwd-~-~------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      |.|+.|+...||+ . .      +..+.+.+|++-+.|..|.     +...|++++.|.+..+||++++.+      ...
T Consensus       113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~-----dD~~ilT~SGD~TCalWDie~g~~------~~~  181 (343)
T KOG0286|consen  113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL-----DDNHILTGSGDMTCALWDIETGQQ------TQV  181 (343)
T ss_pred             EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEc-----CCCceEecCCCceEEEEEcccceE------EEE
Confidence            9999999999997 2 2      3446789999999999994     578999999999999999999984      889


Q ss_pred             ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784          254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR  333 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  333 (501)
                      +.+|.+.|.++.++|.+++.+++|+-|+..++||++.+                                          
T Consensus       182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~------------------------------------------  219 (343)
T KOG0286|consen  182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG------------------------------------------  219 (343)
T ss_pred             ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc------------------------------------------
Confidence            99999999999999988999999999999999999887                                          


Q ss_pred             CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc--CcccCeEEEEecCC-eEEEEe
Q 010784          334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD--GHVGSVTQLHMDPY-KIVTGG  409 (501)
Q Consensus       334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~-~~l~~g  409 (501)
                        ..+++|.+|+..|+++.|.|+|.-+++|++|. .|+||++..+.+      ..+.  .-..+|++++|+-. +++.+|
T Consensus       220 --~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~------a~ys~~~~~~gitSv~FS~SGRlLfag  291 (343)
T KOG0286|consen  220 --QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL------AVYSHDSIICGITSVAFSKSGRLLFAG  291 (343)
T ss_pred             --ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE------eeeccCcccCCceeEEEcccccEEEee
Confidence              34567889999999999999999999999999 999999997765      3333  23458999999999 999998


Q ss_pred             cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          410 RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       410 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      ..|.++.+||.-.++.+..+     .+|.+.|.++..+|||.-+++|+.|  ..+++|.
T Consensus       292 y~d~~c~vWDtlk~e~vg~L-----~GHeNRvScl~~s~DG~av~TgSWD--s~lriW~  343 (343)
T KOG0286|consen  292 YDDFTCNVWDTLKGERVGVL-----AGHENRVSCLGVSPDGMAVATGSWD--STLRIWA  343 (343)
T ss_pred             ecCCceeEeeccccceEEEe-----eccCCeeEEEEECCCCcEEEecchh--HheeecC
Confidence            99999999999999999999     6889999999999999999999976  9999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.5e-44  Score=306.46  Aligned_cols=261  Identities=22%  Similarity=0.338  Sum_probs=234.6

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG  228 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg  228 (501)
                      |-+.+|..+.|++             +++.|+||+.+|.++||+  ....+.+|.+|.+.|.++.|+|..  ++..++||
T Consensus       173 gd~rPis~~~fS~-------------ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~  237 (459)
T KOG0272|consen  173 GDTRPISGCSFSR-------------DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD--SDLNLATA  237 (459)
T ss_pred             cCCCcceeeEeec-------------CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC--Cccceeee
Confidence            4456777777777             899999999999999998  667889999999999999999521  46799999


Q ss_pred             eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC
Q 010784          229 GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV  308 (501)
Q Consensus       229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  308 (501)
                      +.||++++|++.+..      ++..+.+|...|..++|+| +|++|+|++.|.+-++||++++..+              
T Consensus       238 s~Dgtvklw~~~~e~------~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~El--------------  296 (459)
T KOG0272|consen  238 SADGTVKLWKLSQET------PLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSEL--------------  296 (459)
T ss_pred             ccCCceeeeccCCCc------chhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhh--------------
Confidence            999999999999865      5899999999999999998 8999999999999999999987542              


Q ss_pred             ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc
Q 010784          309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE  387 (501)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~  387 (501)
                                                    ....+|...|.+++|.+||.++++|+-|. -+|||++++.++      ..
T Consensus       297 ------------------------------L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i------m~  340 (459)
T KOG0272|consen  297 ------------------------------LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI------MF  340 (459)
T ss_pred             ------------------------------HhhcccccccceeEecCCCceeeccCccchhheeecccCcEE------EE
Confidence                                          33468999999999999999999999999 999999998765      89


Q ss_pred             ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec-cccEEEEeecCCCceEE
Q 010784          388 LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV-SGCRIVTASYGEPGLLQ  465 (501)
Q Consensus       388 ~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~g~i~  465 (501)
                      +.+|...|.+++|+|+ ..+|+||.|++++|||++..+.+.++     .+|.+-|+.++|+| .|.+|+++++|  ++++
T Consensus       341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-----pAH~nlVS~Vk~~p~~g~fL~TasyD--~t~k  413 (459)
T KOG0272|consen  341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-----PAHSNLVSQVKYSPQEGYFLVTASYD--NTVK  413 (459)
T ss_pred             ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec-----ccccchhhheEecccCCeEEEEcccC--ccee
Confidence            9999999999999999 99999999999999999999999998     67889999999998 78999999966  8899


Q ss_pred             Eee---------------------ccCCccceeecCCCCceeeecc
Q 010784          466 FRD---------------------FSNATCPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       466 ~w~---------------------~~~~~~~~~s~~~d~~~~~w~~  490 (501)
                      +|.                     ++.+...+++++.|+++|+|..
T Consensus       414 iWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  414 IWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             eecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence            986                     5567777889999999999963

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=3.5e-42  Score=326.14  Aligned_cols=374  Identities=20%  Similarity=0.297  Sum_probs=309.4

Q ss_pred             CCCCCCcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCccccCCCC-----C---cchhH
Q 010784           12 SPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSL-----P---TVRVR   83 (501)
Q Consensus        12 ~~~~~~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~~~~~~~-----~---~~~~~   83 (501)
                      ++..-.+++..||.|+..+||.||++++|+++++||+.|+.+++++..|.+.+++..+...+....     .   ...|+
T Consensus       100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  179 (537)
T KOG0274|consen  100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWK  179 (537)
T ss_pred             ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhh
Confidence            566668899999999999999999999999999999999999999999998888875544332221     0   13466


Q ss_pred             HHHHHHHHHhhhccccCCee-eEEEe-cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEe
Q 010784           84 EAYLARRIALLQFKFVDPLD-VCFYS-VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRL  161 (501)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~  161 (501)
                      ..|.++......|....... ..+.. +...+.|..+.  ..++++|+.+.++++|+..++..+...+.||.+.|.++++
T Consensus       180 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~  257 (537)
T KOG0274|consen  180 SFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAF  257 (537)
T ss_pred             hhhhhhhhccccccccccccceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEE
Confidence            67777766666776654333 22332 45558888888  6789999999999999999974444459999999999999


Q ss_pred             eccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEec
Q 010784          162 FPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSL  239 (501)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~  239 (501)
                      ..             .++++++|+.|.+++|||  ++.|...+.+|...|.++..      .+..+++|+.|.+|++|++
T Consensus       258 ~~-------------~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~------~~~~~~sgs~D~tVkVW~v  318 (537)
T KOG0274|consen  258 PS-------------GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI------DPFLLVSGSRDNTVKVWDV  318 (537)
T ss_pred             ec-------------CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc------cCceEeeccCCceEEEEec
Confidence            76             579999999999999999  99999999999999999985      5678899999999999999


Q ss_pred             cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784          240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML  319 (501)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (501)
                      .++.      .+..+.+|.++|.++...   +.++++|+.|++|++||+.++                            
T Consensus       319 ~n~~------~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~----------------------------  361 (537)
T KOG0274|consen  319 TNGA------CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTG----------------------------  361 (537)
T ss_pred             cCcc------eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhc----------------------------
Confidence            9876      588888899999999985   569999999999999999866                            


Q ss_pred             EEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCC-CCCCCCCCcccccCcccCeEE
Q 010784          320 YIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRS-QDAVKPQPMAELDGHVGSVTQ  397 (501)
Q Consensus       320 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~h~~~v~~  397 (501)
                                      +.+.++.+|...|+++.+.+. ..+++|+.|+ |++||+++. ++      +.++.+|.+.+..
T Consensus       362 ----------------~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c------~~tl~~h~~~v~~  418 (537)
T KOG0274|consen  362 ----------------KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC------IHTLQGHTSLVSS  418 (537)
T ss_pred             ----------------eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh------hhhhcCCcccccc
Confidence                            455678899999999988655 8999999888 999999997 44      5999999999977


Q ss_pred             EEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784          398 LHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       398 l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      +.+.. +++++++.|++|++||..++++++++...    |...|..+++.  ...+++++  .+|.+++||+.++...
T Consensus       419 l~~~~-~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~----~~~~v~~l~~~--~~~il~s~--~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  419 LLLRD-NFLVSSSADGTIKLWDAEEGECLRTLEGR----HVGGVSALALG--KEEILCSS--DDGSVKLWDLRSGTLI  487 (537)
T ss_pred             ccccc-ceeEeccccccEEEeecccCceeeeeccC----CcccEEEeecC--cceEEEEe--cCCeeEEEecccCchh
Confidence            75544 46777789999999999999999999532    45677777775  46777777  6799999999887654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.8e-42  Score=278.11  Aligned_cols=290  Identities=19%  Similarity=0.273  Sum_probs=245.2

Q ss_pred             eeEEEecCCCCceEEeeCC-cEEEeecCCeeeEEEEecccc----cccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784          103 DVCFYSVAKPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSE----SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       103 ~~~~~~~~~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      ...+..|+.-|+.++..+. -..+++++.|..+.+|++...    +.+.+.++||...|..+..++             +
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-------------d   74 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-------------D   74 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-------------C
Confidence            3456677778999999876 678889999999999997643    366889999999999999999             8


Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      |+++++++.|+++++||  .++..+.|.+|...|.+++|+    ++...+++|+.|.+|++|+.....       ..++.
T Consensus        75 g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s----~dn~qivSGSrDkTiklwnt~g~c-------k~t~~  143 (315)
T KOG0279|consen   75 GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS----TDNRQIVSGSRDKTIKLWNTLGVC-------KYTIH  143 (315)
T ss_pred             CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEec----CCCceeecCCCcceeeeeeecccE-------EEEEe
Confidence            99999999999999999  778899999999999999997    899999999999999999998764       34443


Q ss_pred             C--CCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784          256 G--HEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL  332 (501)
Q Consensus       256 ~--~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  332 (501)
                      .  +.+.|.|++|+|+. ..+|++++.|++|++||+++.+.                                       
T Consensus       144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---------------------------------------  184 (315)
T KOG0279|consen  144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---------------------------------------  184 (315)
T ss_pred             cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---------------------------------------
Confidence            3  37899999999964 67999999999999999988643                                       


Q ss_pred             CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec
Q 010784          333 RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR  410 (501)
Q Consensus       333 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs  410 (501)
                           ...+.+|.+.++.+++||||.+.++|+.|+ +.+||++.++.+      ..+ +|...|.+++|+|+ ..++. .
T Consensus       185 -----~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l------ysl-~a~~~v~sl~fspnrywL~~-a  251 (315)
T KOG0279|consen  185 -----RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL------YSL-EAFDIVNSLCFSPNRYWLCA-A  251 (315)
T ss_pred             -----hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee------Eec-cCCCeEeeEEecCCceeEee-c
Confidence                 345678999999999999999999999999 999999998764      555 46889999999999 55555 4


Q ss_pred             CCCcEEEEeCCCcccccccccCCC----CCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          411 DDLRINIWETDTGMLANSLLCNYP----EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       411 ~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      .+..|+|||++++.++..+.....    ........+++|++||..|++|-  .|+.|++|.+.
T Consensus       252 t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~--td~~irv~qv~  313 (315)
T KOG0279|consen  252 TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY--TDNVIRVWQVA  313 (315)
T ss_pred             cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee--cCCcEEEEEee
Confidence            777899999999999888754321    11123356789999999999998  66999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6e-41  Score=268.69  Aligned_cols=281  Identities=20%  Similarity=0.324  Sum_probs=243.1

Q ss_pred             CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CC
Q 010784          121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KG  196 (501)
Q Consensus       121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~  196 (501)
                      +..+|+++++|.+|++|...+| .+.++++...+.|+.+...|             ++..||+++. -.|++||    ..
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG-~C~rTiqh~dsqVNrLeiTp-------------dk~~LAaa~~-qhvRlyD~~S~np   73 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTG-ICSRTIQHPDSQVNRLEITP-------------DKKDLAAAGN-QHVRLYDLNSNNP   73 (311)
T ss_pred             CceEEEeccCcceeeeeehhcC-eEEEEEecCccceeeEEEcC-------------CcchhhhccC-CeeEEEEccCCCC
Confidence            4578999999999999999996 89999988888999999999             8889998884 5799999    34


Q ss_pred             ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEE
Q 010784          197 SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT  276 (501)
Q Consensus       197 ~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s  276 (501)
                      ..+.++.+|+..|+++.|.    .+|+.+++|++||+++|||++...       .+....|..+|+++..+| +...|++
T Consensus        74 ~Pv~t~e~h~kNVtaVgF~----~dgrWMyTgseDgt~kIWdlR~~~-------~qR~~~~~spVn~vvlhp-nQteLis  141 (311)
T KOG0315|consen   74 NPVATFEGHTKNVTAVGFQ----CDGRWMYTGSEDGTVKIWDLRSLS-------CQRNYQHNSPVNTVVLHP-NQTELIS  141 (311)
T ss_pred             CceeEEeccCCceEEEEEe----ecCeEEEecCCCceEEEEeccCcc-------cchhccCCCCcceEEecC-CcceEEe
Confidence            4789999999999999997    899999999999999999999854       455556889999999998 6778999


Q ss_pred             EeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC
Q 010784          277 ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS  356 (501)
Q Consensus       277 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~  356 (501)
                      |..+|.|++||+.........                                           +......|.++...||
T Consensus       142 ~dqsg~irvWDl~~~~c~~~l-------------------------------------------iPe~~~~i~sl~v~~d  178 (311)
T KOG0315|consen  142 GDQSGNIRVWDLGENSCTHEL-------------------------------------------IPEDDTSIQSLTVMPD  178 (311)
T ss_pred             ecCCCcEEEEEccCCcccccc-------------------------------------------CCCCCcceeeEEEcCC
Confidence            999999999999886432211                                           1122467899999999


Q ss_pred             CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc-ccccccccCC
Q 010784          357 KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG-MLANSLLCNY  433 (501)
Q Consensus       357 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~~  433 (501)
                      |.+++.+...+ .++|++.+.+......|+..++.|.+.+..+.+||+ ++|+++|.|.+++||+.++. +.-..+    
T Consensus       179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l----  254 (311)
T KOG0315|consen  179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL----  254 (311)
T ss_pred             CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEe----
Confidence            99999999777 999999987766667889999999999999999999 99999999999999999987 444555    


Q ss_pred             CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccceee
Q 010784          434 PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLK  478 (501)
Q Consensus       434 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s  478 (501)
                       .+|..++..++||.||+||++|+  .|+.+++|+++.++.....
T Consensus       255 -~gh~rWvWdc~FS~dg~YlvTas--sd~~~rlW~~~~~k~v~qy  296 (311)
T KOG0315|consen  255 -TGHQRWVWDCAFSADGEYLVTAS--SDHTARLWDLSAGKEVRQY  296 (311)
T ss_pred             -ecCCceEEeeeeccCccEEEecC--CCCceeecccccCceeeec
Confidence             56788999999999999999999  5599999999988864443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.4e-41  Score=275.20  Aligned_cols=272  Identities=20%  Similarity=0.261  Sum_probs=242.9

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      +..++|+||.+.|.++.|++             |.+++++++.||.+.|||  +...++.++-...-|...+|+    |.
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~-------------Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~s----PS  108 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWST-------------DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYS----PS  108 (343)
T ss_pred             eeEEEecccccceeeeEecC-------------CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEEC----CC
Confidence            44588999999999999999             899999999999999999  677777777788899999997    89


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      |+++++|+.|....||++.+.+.....+....+.+|++.+.+..|.+  ...|+|+|.|.+..+||+++++         
T Consensus       109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~---------  177 (343)
T KOG0286|consen  109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQ---------  177 (343)
T ss_pred             CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccce---------
Confidence            99999999999999999997755555566778999999999999984  5689999999999999998874         


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                                                         .+..+.+|.+.|.+++++| +++.+++|+-|+ .++||++.+...
T Consensus       178 -----------------------------------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~  222 (343)
T KOG0286|consen  178 -----------------------------------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV  222 (343)
T ss_pred             -----------------------------------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee
Confidence                                               4567889999999999999 899999999888 999999997665


Q ss_pred             CCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          380 VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       380 ~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                            ++|.+|+..|+++.|.|+ .-+++||.|++.++||++..+.+..+..   .....+|++++||..|++|++|. 
T Consensus       223 ------qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~---~~~~~gitSv~FS~SGRlLfagy-  292 (343)
T KOG0286|consen  223 ------QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH---DSIICGITSVAFSKSGRLLFAGY-  292 (343)
T ss_pred             ------EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---CcccCCceeEEEcccccEEEeee-
Confidence                  999999999999999999 8899999999999999999999988852   33467899999999999999997 


Q ss_pred             CCCceEEEee---------------------ccCCccceeecCCCCceeeec
Q 010784          459 GEPGLLQFRD---------------------FSNATCPVLKHEVQNDSKFWG  489 (501)
Q Consensus       459 d~~g~i~~w~---------------------~~~~~~~~~s~~~d~~~~~w~  489 (501)
                       .|.++.+||                     +.+++..+++||-|.++|+|.
T Consensus       293 -~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  293 -DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             -cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence             679999999                     456777788999999999995

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.7e-42  Score=293.16  Aligned_cols=284  Identities=18%  Similarity=0.239  Sum_probs=253.1

Q ss_pred             CCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784          110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS  189 (501)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  189 (501)
                      ..+|+.+.|.|+|+.|++|+..|.+.+|+..+ ......++.|.++|+++.|++             ++.+++||+.+|.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~-------------~g~wmiSgD~gG~  161 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSH-------------NGTWMISGDKGGM  161 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEcc-------------CCCEEEEcCCCce
Confidence            44699999999999999999999999999865 466677889999999999999             8999999999999


Q ss_pred             eEEec-CCceeeeccCCC-CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784          190 IRLWW-KGSCQRCFKGHN-GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA  267 (501)
Q Consensus       190 i~vwd-~~~~~~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  267 (501)
                      |++|+ ....++.+.+|. ..|++++|+    |+...|++++.||+|+|||......      ...+.+|.-.|.++.|+
T Consensus       162 iKyWqpnmnnVk~~~ahh~eaIRdlafS----pnDskF~t~SdDg~ikiWdf~~~ke------e~vL~GHgwdVksvdWH  231 (464)
T KOG0284|consen  162 IKYWQPNMNNVKIIQAHHAEAIRDLAFS----PNDSKFLTCSDDGTIKIWDFRMPKE------ERVLRGHGWDVKSVDWH  231 (464)
T ss_pred             EEecccchhhhHHhhHhhhhhhheeccC----CCCceeEEecCCCeEEEEeccCCch------hheeccCCCCcceeccC
Confidence            99999 666666666655 999999998    7888999999999999999988764      56779999999999999


Q ss_pred             ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCc
Q 010784          268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPI  347 (501)
Q Consensus       268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  347 (501)
                      | ...++++||.|..|++||.+++.+                                            +.++..|+..
T Consensus       232 P-~kgLiasgskDnlVKlWDprSg~c--------------------------------------------l~tlh~HKnt  266 (464)
T KOG0284|consen  232 P-TKGLIASGSKDNLVKLWDPRSGSC--------------------------------------------LATLHGHKNT  266 (464)
T ss_pred             C-ccceeEEccCCceeEeecCCCcch--------------------------------------------hhhhhhccce
Confidence            9 567999999999999999998854                                            3456679999


Q ss_pred             EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcc
Q 010784          348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGM  424 (501)
Q Consensus       348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~  424 (501)
                      |..+.|+|++++|+++|.|. ++++|+++.+.+      ..+++|...|+++.|+|-  .++++|+.||.|..|.+...+
T Consensus       267 Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl------~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~  340 (464)
T KOG0284|consen  267 VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL------FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE  340 (464)
T ss_pred             EEEEEEcCCCCeeEEccCCceEEEEehhHhHHH------HHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence            99999999999999999999 999999976655      899999999999999998  999999999999999998777


Q ss_pred             cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          425 LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       425 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      ++..+.    .+|...|.+++|+|-|.+|++|+  .|.++++|.-..+..
T Consensus       341 p~~~i~----~AHd~~iwsl~~hPlGhil~tgs--nd~t~rfw~r~rp~d  384 (464)
T KOG0284|consen  341 PLGEIP----PAHDGEIWSLAYHPLGHILATGS--NDRTVRFWTRNRPGD  384 (464)
T ss_pred             cccCCC----cccccceeeeeccccceeEeecC--CCcceeeeccCCCCC
Confidence            777774    67899999999999999999998  779999998665544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.7e-41  Score=306.06  Aligned_cols=353  Identities=18%  Similarity=0.289  Sum_probs=280.4

Q ss_pred             ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      .|..|+--++|+|.+..+++|+.|+.++|||+..+ .+.+.|+||.+.|.++.|.|+           .....|++|..|
T Consensus       103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~-~~th~fkG~gGvVssl~F~~~-----------~~~~lL~sg~~D  170 (775)
T KOG0319|consen  103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG-YCTHSFKGHGGVVSSLLFHPH-----------WNRWLLASGATD  170 (775)
T ss_pred             ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC-EEEEEecCCCceEEEEEeCCc-----------cchhheeecCCC
Confidence            46788999999999999999999999999999985 899999999999999999994           245679999999


Q ss_pred             CceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc--------------------
Q 010784          188 HSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK--------------------  244 (501)
Q Consensus       188 g~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~--------------------  244 (501)
                      +++++||   ...++.+...|.+.|+++.|+    +++..+++++.|..+.+||+.+.+.                    
T Consensus       171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~----~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~  246 (775)
T KOG0319|consen  171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFS----EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREEL  246 (775)
T ss_pred             ceEEEEEcccCchHHHHHHhhhhheeeeeec----cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhc
Confidence            9999999   334678889999999999997    6788888888888888888744322                    


Q ss_pred             --------------------------------------------------------------------------------
Q 010784          245 --------------------------------------------------------------------------------  244 (501)
Q Consensus       245 --------------------------------------------------------------------------------  244 (501)
                                                                                                      
T Consensus       247 ~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI  326 (775)
T KOG0319|consen  247 GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI  326 (775)
T ss_pred             CCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh
Confidence                                                                                            


Q ss_pred             ------------------cccc-------cceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784          245 ------------------RGQQ-------ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       245 ------------------~~~~-------~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                                        .+..       ..-+.+.+|+..|.++... ..+.+|++|+.|.++++|.++.+..... ..
T Consensus       327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~~-~~  404 (775)
T KOG0319|consen  327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKSL-CV  404 (775)
T ss_pred             eeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeec-ccCcEEEEecCCceEEEEEecCCcchhh-hh
Confidence                              0000       0113567888999988854 2667999999999999999854432111 11


Q ss_pred             ccceecCCCceeeecCC---CeEEEEe-CCcEEEEEcCCCce---------EeeeccCCCcEEEEEEcCCCcEEEEEcCC
Q 010784          300 VGMTSVPGVPVDMKCHE---SMLYIAS-GSSVVTIDLRTMQK---------VMTPAICKPILHSFSIMPSKSLICTGGIG  366 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~---~~~~~~~-~~~i~~~d~~~~~~---------~~~~~~~~~~v~~v~~~~~~~~l~~~~~d  366 (501)
                      .....+...+.++..+.   ..++.++ +.++++|++...+.         ..+...|...|++++++|+..++++||.|
T Consensus       405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD  484 (775)
T KOG0319|consen  405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD  484 (775)
T ss_pred             hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence            11113444444444432   2222222 34899999976221         12445799999999999999999999999


Q ss_pred             c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeee
Q 010784          367 K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCS  444 (501)
Q Consensus       367 ~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  444 (501)
                      + .+||++.....      ..++.+|...|.++.|+|. ++++++|.|++|+||.++++.++++|     .+|...|..+
T Consensus       485 ktaKiW~le~~~l------~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-----eGH~~aVlra  553 (775)
T KOG0319|consen  485 KTAKIWDLEQLRL------LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-----EGHTSAVLRA  553 (775)
T ss_pred             cceeeecccCceE------EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-----cCccceeEee
Confidence            9 99999996544      4999999999999999999 99999999999999999999999999     7889999999


Q ss_pred             EeeccccEEEEeecCCCceEEEeeccCCc---------------------cceeecCCCCceeeeccc
Q 010784          445 AMAVSGCRIVTASYGEPGLLQFRDFSNAT---------------------CPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       445 ~~s~~g~~l~s~~~d~~g~i~~w~~~~~~---------------------~~~~s~~~d~~~~~w~~~  491 (501)
                      .|-.+|+.|++++  .||.|++|++.+..                     ..+++|+.|+.+-+|.=.
T Consensus       554 ~F~~~~~qliS~~--adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  554 SFIRNGKQLISAG--ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             eeeeCCcEEEecc--CCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence            9999999999999  56999999976543                     346789999999999643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.9e-39  Score=297.65  Aligned_cols=354  Identities=21%  Similarity=0.292  Sum_probs=280.6

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc-CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD-HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      .+++++++||+.++++++....+++|++.++ ++++.++. |+++|.-++|+|             .+.++++|+.||.+
T Consensus        64 ~ita~~l~~d~~~L~~a~rs~llrv~~L~tg-k~irswKa~He~Pvi~ma~~~-------------~g~LlAtggaD~~v  129 (775)
T KOG0319|consen   64 EITALALTPDEEVLVTASRSQLLRVWSLPTG-KLIRSWKAIHEAPVITMAFDP-------------TGTLLATGGADGRV  129 (775)
T ss_pred             hhheeeecCCccEEEEeeccceEEEEEcccc-hHhHhHhhccCCCeEEEEEcC-------------CCceEEeccccceE
Confidence            3999999999999999999999999999996 99999998 999999999999             78999999999999


Q ss_pred             EEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784          191 RLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG  268 (501)
Q Consensus       191 ~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  268 (501)
                      +|||  .+.+...|++|.+.|.++.|+|.  .....|++|+.|+.+++||+++...     ++..+..|.+.|+++.+.+
T Consensus       130 ~VWdi~~~~~th~fkG~gGvVssl~F~~~--~~~~lL~sg~~D~~v~vwnl~~~~t-----cl~~~~~H~S~vtsL~~~~  202 (775)
T KOG0319|consen  130 KVWDIKNGYCTHSFKGHGGVVSSLLFHPH--WNRWLLASGATDGTVRVWNLNDKRT-----CLHTMILHKSAVTSLAFSE  202 (775)
T ss_pred             EEEEeeCCEEEEEecCCCceEEEEEeCCc--cchhheeecCCCceEEEEEcccCch-----HHHHHHhhhhheeeeeecc
Confidence            9999  88899999999999999999853  3346799999999999999997664     7888999999999999997


Q ss_pred             cCCeEEEEEeCCCeEEEEECCCCccccceeccc---------c-----------e-------------------------
Q 010784          269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG---------M-----------T-------------------------  303 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~---------~-----------~-------------------------  303 (501)
                       ++..+++++.|..+.+||+.+.+.........         .           .                         
T Consensus       203 -d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~  281 (775)
T KOG0319|consen  203 -DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS  281 (775)
T ss_pred             -CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc
Confidence             67888899999999999986443221100000         0           0                         


Q ss_pred             ---------------------------------------ecCCCceeeecC---CCeEEEEeCC-cEEEEEcCCCceEee
Q 010784          304 ---------------------------------------SVPGVPVDMKCH---ESMLYIASGS-SVVTIDLRTMQKVMT  340 (501)
Q Consensus       304 ---------------------------------------~~~~~~~~~~~~---~~~~~~~~~~-~i~~~d~~~~~~~~~  340 (501)
                                                             .....+..|.+-   .+.+++|+.+ .+++|+..+..+. .
T Consensus       282 ~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-i  360 (775)
T KOG0319|consen  282 EEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-I  360 (775)
T ss_pred             hhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-E
Confidence                                                   000011111111   1233344433 5666666555544 6


Q ss_pred             eccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC---------------------------------------
Q 010784          341 PAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV---------------------------------------  380 (501)
Q Consensus       341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~---------------------------------------  380 (501)
                      +.+|...|.++....+|.+|++|+.|+ +++|.+.++....                                       
T Consensus       361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~  440 (775)
T KOG0319|consen  361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWD  440 (775)
T ss_pred             EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEec
Confidence            778999999999777788999999888 9999774332110                                       


Q ss_pred             --C-----CCCcc----cccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784          381 --K-----PQPMA----ELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       381 --~-----~~~~~----~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                        .     ...+.    +...|...|++++++|+ +++|+||.|.+.+||+++..+.+.++     .+|...|.++.|++
T Consensus       441 l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL-----sGH~RGvw~V~Fs~  515 (775)
T KOG0319|consen  441 LPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL-----SGHTRGVWCVSFSK  515 (775)
T ss_pred             CCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe-----eCCccceEEEEecc
Confidence              0     00111    23458889999999999 99999999999999999999999999     68889999999999


Q ss_pred             cccEEEEeecCCCceEEEeeccC---------------------CccceeecCCCCceeeecccCCCC
Q 010784          449 SGCRIVTASYGEPGLLQFRDFSN---------------------ATCPVLKHEVQNDSKFWGPQCYSD  495 (501)
Q Consensus       449 ~g~~l~s~~~d~~g~i~~w~~~~---------------------~~~~~~s~~~d~~~~~w~~~~~~~  495 (501)
                      ..+.++++|  .|++|++|.+++                     .+..++|++.||-+|+|++.....
T Consensus       516 ~dq~laT~S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC  581 (775)
T KOG0319|consen  516 NDQLLATCS--GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC  581 (775)
T ss_pred             ccceeEecc--CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence            999999999  669999999653                     445688999999999999987654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.2e-38  Score=278.73  Aligned_cols=343  Identities=18%  Similarity=0.213  Sum_probs=273.1

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecc---cCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLS---DHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~---~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ..|.+-|+|+.++|||.++|+.+.||.+.+||-.++ +.+..+.   +|++.|.++.|+|             |+..|+|
T Consensus       187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsP-------------Ds~~~~T  252 (603)
T KOG0318|consen  187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSP-------------DSTQFLT  252 (603)
T ss_pred             cccccceeeEEECCCCCeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECC-------------CCceEEE
Confidence            335555999999999999999999999999999986 7777777   8999999999999             8999999


Q ss_pred             eeCCCceEEec--CCceee-------------------------------------------eccCCCCceEEEEeeecC
Q 010784          184 SSCDHSIRLWW--KGSCQR-------------------------------------------CFKGHNGPVSTLSDKLLG  218 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~~~~-------------------------------------------~~~~h~~~v~~l~~s~~~  218 (501)
                      ++.|.+++|||  +.++++                                           .+.+|...|+++..+   
T Consensus       253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~---  329 (603)
T KOG0318|consen  253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS---  329 (603)
T ss_pred             ecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc---
Confidence            99999999998  332221                                           345899999999997   


Q ss_pred             CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784          219 DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC  298 (501)
Q Consensus       219 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  298 (501)
                       +++.+|++|+.||.|.-|+..++..     ....-++|+..|.+++.+  +...+++.+.|.++++.++........  
T Consensus       330 -~d~~~i~SgsyDG~I~~W~~~~g~~-----~~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~~~~t~~--  399 (603)
T KOG0318|consen  330 -PDGKTIYSGSYDGHINSWDSGSGTS-----DRLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKDNGYTKS--  399 (603)
T ss_pred             -CCCCEEEeeccCceEEEEecCCccc-----cccccccccceEEEEeec--CCCcEEEEecCCeEEEEecccCccccc--
Confidence             8899999999999999999998864     222237799999999987  445788999999999999876533221  


Q ss_pred             cccceecCCCceeeecCCC--eEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784          299 CVGMTSVPGVPVDMKCHES--MLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~  375 (501)
                        ........+..+...++  ..++++.+.|.++.-.+.-  .... -.....+++++|++..++.|++|+ +++|.+..
T Consensus       400 --~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~--~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g  474 (603)
T KOG0318|consen  400 --EVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV--SSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG  474 (603)
T ss_pred             --ceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc--eeec-cccccceEEEcCCCCEEEEecccceEEEEEecC
Confidence              11234445555555544  6677777777776533222  2222 244567899999999999999999 99999988


Q ss_pred             CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEE
Q 010784          376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIV  454 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  454 (501)
                      ....    ....+..|.++|++++++|+ .+||+|...+.+.+||+.+.+......    .-|...|.+++|+|+..++|
T Consensus       475 ~~l~----ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w----~FHtakI~~~aWsP~n~~vA  546 (603)
T KOG0318|consen  475 DELK----EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW----AFHTAKINCVAWSPNNKLVA  546 (603)
T ss_pred             Cccc----ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee----eeeeeeEEEEEeCCCceEEE
Confidence            6532    23456679999999999999 999999999999999999887633221    45889999999999999999


Q ss_pred             EeecCCCceEEEeeccCCcc---------------------ceeecCCCCceeeeccc
Q 010784          455 TASYGEPGLLQFRDFSNATC---------------------PVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       455 s~~~d~~g~i~~w~~~~~~~---------------------~~~s~~~d~~~~~w~~~  491 (501)
                      +|+  -|.+|.+|++..+..                     -+++.+.|..+|+|++.
T Consensus       547 TGS--lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  547 TGS--LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             ecc--ccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence            999  559999999875443                     35688899999999874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.8e-40  Score=276.23  Aligned_cols=286  Identities=18%  Similarity=0.249  Sum_probs=256.6

Q ss_pred             CeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          101 PLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       101 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      ++..+...+..+|+.+-++|+...+++++.|++|++||..++ ++...++||.+.|..++|+.             .|.+
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-~~e~~LrGHt~sv~di~~~a-------------~Gk~  164 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG-ELERSLRGHTDSVFDISFDA-------------SGKY  164 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch-hhhhhhhccccceeEEEEec-------------CccE
Confidence            444556667778999999999999999999999999999996 88999999999999999998             7999


Q ss_pred             EEEeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          181 LVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       181 l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      +++++.|-.+++||   ...+++.+.+|...|.++.|.    |.|.++++++.|.+|+.|++.++.      ++.++.+|
T Consensus       165 l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~----P~gd~ilS~srD~tik~We~~tg~------cv~t~~~h  234 (406)
T KOG0295|consen  165 LATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL----PLGDHILSCSRDNTIKAWECDTGY------CVKTFPGH  234 (406)
T ss_pred             EEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEE----ecCCeeeecccccceeEEecccce------eEEeccCc
Confidence            99999999999999   356778888999999999998    678999999999999999999987      59999999


Q ss_pred             CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784          258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  337 (501)
                      ...|..++.+. ++.++++++.|.+|++|-+.++++.                                           
T Consensus       235 ~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k-------------------------------------------  270 (406)
T KOG0295|consen  235 SEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCK-------------------------------------------  270 (406)
T ss_pred             hHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhh-------------------------------------------
Confidence            99999999995 8999999999999999999887432                                           


Q ss_pred             EeeeccCCCcEEEEEEcC---------------CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec
Q 010784          338 VMTPAICKPILHSFSIMP---------------SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD  401 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~---------------~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  401 (501)
                       ..++.|+.+|.+++|-|               .+.++++++.|+ |++||+.++.++      .++.+|.+.|..++|+
T Consensus       271 -~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL------~tL~ghdnwVr~~af~  343 (406)
T KOG0295|consen  271 -AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL------FTLVGHDNWVRGVAFS  343 (406)
T ss_pred             -hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE------EEEecccceeeeeEEc
Confidence             24456777777777765               136899999999 999999997665      9999999999999999


Q ss_pred             CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          402 PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       402 ~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      |. ++|+++.+|+++++||+++++++.++     ..|..-++++.|..+..++++|+  -|..+++|.
T Consensus       344 p~Gkyi~ScaDDktlrvwdl~~~~cmk~~-----~ah~hfvt~lDfh~~~p~VvTGs--Vdqt~KvwE  404 (406)
T KOG0295|consen  344 PGGKYILSCADDKTLRVWDLKNLQCMKTL-----EAHEHFVTSLDFHKTAPYVVTGS--VDQTVKVWE  404 (406)
T ss_pred             CCCeEEEEEecCCcEEEEEeccceeeecc-----CCCcceeEEEecCCCCceEEecc--ccceeeeee
Confidence            99 99999999999999999999999999     56788899999999999999999  559999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.3e-39  Score=274.20  Aligned_cols=289  Identities=19%  Similarity=0.317  Sum_probs=253.7

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      ....|-.=|.|++++|...++++|+.|++++|||+.+| ++..++.||...|..+++|+             .-.+++++
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGhi~~vr~vavS~-------------rHpYlFs~  211 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGHIETVRGVAVSK-------------RHPYLFSA  211 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecchhheeeeeeecc-------------cCceEEEe
Confidence            34445555999999999999999999999999999996 99999999999999999998             67899999


Q ss_pred             eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784          185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      +.|+.|+-||  ..+.++.+.+|-..|.|++.+    |.-+.|++|+.|.++++||+++...      +..+.+|..+|.
T Consensus       212 gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh----PTldvl~t~grDst~RvWDiRtr~~------V~~l~GH~~~V~  281 (460)
T KOG0285|consen  212 GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH----PTLDVLVTGGRDSTIRVWDIRTRAS------VHVLSGHTNPVA  281 (460)
T ss_pred             cCCCeeEEEechhhhhHHHhccccceeEEEecc----ccceeEEecCCcceEEEeeecccce------EEEecCCCCcce
Confidence            9999999999  778899999999999999997    7888999999999999999999874      899999999999


Q ss_pred             EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784          263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA  342 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  342 (501)
                      .+.+.|.+ ..+++||.|++|++||++.++.                                            ..++.
T Consensus       282 ~V~~~~~d-pqvit~S~D~tvrlWDl~agkt--------------------------------------------~~tlt  316 (460)
T KOG0285|consen  282 SVMCQPTD-PQVITGSHDSTVRLWDLRAGKT--------------------------------------------MITLT  316 (460)
T ss_pred             eEEeecCC-CceEEecCCceEEEeeeccCce--------------------------------------------eEeee
Confidence            99998744 4789999999999999998742                                            34556


Q ss_pred             cCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCC
Q 010784          343 ICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       343 ~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~  422 (501)
                      .|...+.+++.+|....+++++.|.|+.|++..+..+      +.+.+|...|++++.+.+.++++|+.+|.+.+||.++
T Consensus       317 ~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~------~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  317 HHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFL------QNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             cccceeeEEecCCchhhhhccCCccceeccCCccchh------hccccccceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence            6899999999999999999999999999999997665      7799999999999999998888888999999999999


Q ss_pred             cccccccccC---CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          423 GMLANSLLCN---YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       423 ~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      |...+.+...   ........|.+.+|...|..|++|.  .|.+|++|.-.
T Consensus       391 g~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e--adKtIk~~keD  439 (460)
T KOG0285|consen  391 GHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE--ADKTIKMYKED  439 (460)
T ss_pred             CcccccccccccCCccccccceeEEeecccCceEEecc--CCcceEEEecc
Confidence            8665554211   1123356789999999999999999  55999999744

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.5e-39  Score=281.09  Aligned_cols=275  Identities=18%  Similarity=0.279  Sum_probs=247.5

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      +.|++++|+.+|.+||+|+.+|.+++|+..  +.++.+|..|+++|.++.|+.             .|++|++++.||++
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk-------------~G~yilS~~vD~tt  300 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNK-------------KGTYILSGGVDGTT  300 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcC-------------CCCEEEeccCCccE
Confidence            459999999999999999999999999988  588899999999999999998             89999999999999


Q ss_pred             EEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784          191 RLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG  268 (501)
Q Consensus       191 ~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  268 (501)
                      .+||  ++...+.+..|..+-..+.|.     +...+++++.||.|+|+.+....      ++.++.+|.++|.++.|.|
T Consensus       301 ilwd~~~g~~~q~f~~~s~~~lDVdW~-----~~~~F~ts~td~~i~V~kv~~~~------P~~t~~GH~g~V~alk~n~  369 (524)
T KOG0273|consen  301 ILWDAHTGTVKQQFEFHSAPALDVDWQ-----SNDEFATSSTDGCIHVCKVGEDR------PVKTFIGHHGEVNALKWNP  369 (524)
T ss_pred             EEEeccCceEEEeeeeccCCccceEEe-----cCceEeecCCCceEEEEEecCCC------cceeeecccCceEEEEECC
Confidence            9999  788889999999988889994     67789999999999999998766      6889999999999999998


Q ss_pred             cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784          269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL  348 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v  348 (501)
                       .+.+|+++|.|+++++|+......                                            ...+..|...|
T Consensus       370 -tg~LLaS~SdD~TlkiWs~~~~~~--------------------------------------------~~~l~~Hskei  404 (524)
T KOG0273|consen  370 -TGSLLASCSDDGTLKIWSMGQSNS--------------------------------------------VHDLQAHSKEI  404 (524)
T ss_pred             -CCceEEEecCCCeeEeeecCCCcc--------------------------------------------hhhhhhhccce
Confidence             788999999999999999876532                                            24567789999


Q ss_pred             EEEEEcCC---------CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784          349 HSFSIMPS---------KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       349 ~~v~~~~~---------~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i  417 (501)
                      +.+.|+|.         +..+++++.|. |++||+..+.++      ++|..|..+|++++|+|+ +++|+|+.||.|.+
T Consensus       405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i------~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i  478 (524)
T KOG0273|consen  405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI------HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI  478 (524)
T ss_pred             eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee------EeeccCCCceEEEEecCCCcEEEecCCCCeeEe
Confidence            99999985         34788888888 999999997654      999999999999999999 99999999999999


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      |+.++++..+++.      ....|..++|+.+|.+|..+-  .|+.+++.|+.
T Consensus       479 ws~~~~~l~~s~~------~~~~Ifel~Wn~~G~kl~~~~--sd~~vcvldlr  523 (524)
T KOG0273|consen  479 WSTKTGKLVKSYQ------GTGGIFELCWNAAGDKLGACA--SDGSVCVLDLR  523 (524)
T ss_pred             ccccchheeEeec------CCCeEEEEEEcCCCCEEEEEe--cCCCceEEEec
Confidence            9999999999994      256699999999999998887  56999998875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-38  Score=256.77  Aligned_cols=266  Identities=21%  Similarity=0.344  Sum_probs=230.0

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-------CCceeeeccCCCCceEEEEeee
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-------KGSCQRCFKGHNGPVSTLSDKL  216 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-------~~~~~~~~~~h~~~v~~l~~s~  216 (501)
                      ....++++|++.|+.++..+.            +.+.+++++.|.++.+|+       .|..++.+.+|...|..+..+ 
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~------------~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s-   72 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIK------------NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLS-   72 (315)
T ss_pred             eeeeeecCCCceEEEEEeecC------------CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEc-
Confidence            456688999999999999884            468999999999999996       567789999999999999997 


Q ss_pred             cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784          217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS  296 (501)
Q Consensus       217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~  296 (501)
                         ++|++.++++.|+++++||+.+++      ..+.+.+|...|.+++|++ +...+++|+.|.+|++|++.....   
T Consensus        73 ---~dg~~alS~swD~~lrlWDl~~g~------~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck---  139 (315)
T KOG0279|consen   73 ---SDGNFALSASWDGTLRLWDLATGE------STRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCK---  139 (315)
T ss_pred             ---cCCceEEeccccceEEEEEecCCc------EEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEE---
Confidence               899999999999999999999986      5889999999999999998 788999999999999999876521   


Q ss_pred             eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc--CCCcEEEEEEcCC--CcEEEEEcCCc-EEEE
Q 010784          297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI--CKPILHSFSIMPS--KSLICTGGIGK-AMTW  371 (501)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~v~~v~~~~~--~~~l~~~~~d~-i~iw  371 (501)
                                                                .++..  +.+.|.++.|+|+  .-+|++++.|+ +++|
T Consensus       140 ------------------------------------------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvW  177 (315)
T KOG0279|consen  140 ------------------------------------------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVW  177 (315)
T ss_pred             ------------------------------------------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEE
Confidence                                                      22222  3688999999998  78999999999 9999


Q ss_pred             ecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784          372 DIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG  450 (501)
Q Consensus       372 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  450 (501)
                      |+++.+..      ..+.+|.+.++.++++|+ .+.++|+.||.+.+||+..++.+.++      ++...|.+++|+|+.
T Consensus       178 nl~~~~l~------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl------~a~~~v~sl~fspnr  245 (315)
T KOG0279|consen  178 NLRNCQLR------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL------EAFDIVNSLCFSPNR  245 (315)
T ss_pred             ccCCcchh------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec------cCCCeEeeEEecCCc
Confidence            99997655      889999999999999999 99999999999999999999999888      467889999999999


Q ss_pred             cEEEEeecCCCceEEEeeccC------------------------------CccceeecCCCCceeeecccC
Q 010784          451 CRIVTASYGEPGLLQFRDFSN------------------------------ATCPVLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       451 ~~l~s~~~d~~g~i~~w~~~~------------------------------~~~~~~s~~~d~~~~~w~~~~  492 (501)
                      -.|+.+..   ..|++||+..                              ++.-+.+|-.|+.+++|.+..
T Consensus       246 ywL~~at~---~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  246 YWLCAATA---TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             eeEeeccC---CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            88888753   4699999543                              223344666788888887653

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.7e-38  Score=265.14  Aligned_cols=328  Identities=16%  Similarity=0.164  Sum_probs=262.0

Q ss_pred             CCeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784          100 DPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN  179 (501)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~  179 (501)
                      ......|..|..++.+++++|+..+++||+.|-.-.+|++.++ .....+.+|++.|+++.|+.             +|.
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-e~~~eltgHKDSVt~~~Fsh-------------dgt  119 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-EFAGELTGHKDSVTCCSFSH-------------DGT  119 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-cceeEecCCCCceEEEEEcc-------------Cce
Confidence            4445678889999999999999999999999999999999996 68899999999999999999             899


Q ss_pred             EEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          180 VLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       180 ~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      +||||+.+|.|+||+  ++.....+...-..+.-|.|+    |.+.+|+.|+.||.+-+|.+.++.      ..+.+.+|
T Consensus       120 lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH----p~a~illAG~~DGsvWmw~ip~~~------~~kv~~Gh  189 (399)
T KOG0296|consen  120 LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH----PRAHILLAGSTDGSVWMWQIPSQA------LCKVMSGH  189 (399)
T ss_pred             EEEecCCCccEEEEEcccCceEEEeecccCceEEEEec----ccccEEEeecCCCcEEEEECCCcc------eeeEecCC
Confidence            999999999999998  676666766566778888898    789999999999999999999864      47889999


Q ss_pred             CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCC
Q 010784          258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRT  334 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~  334 (501)
                      +.++++=.|.| +++.++++..||+|++||+.+++++.......    .....++..+...-.+..+   +.+++....+
T Consensus       190 ~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e----~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s  264 (399)
T KOG0296|consen  190 NSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAE----GLELPCISLNLAGSTLTKGNSEGVACGVNNGS  264 (399)
T ss_pred             CCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccc----cCcCCccccccccceeEeccCCccEEEEcccc
Confidence            99999999998 79999999999999999999997654433211    1111222222222122211   2444444444


Q ss_pred             CceEeeec--------cCCCcEEEEEE---cCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784          335 MQKVMTPA--------ICKPILHSFSI---MPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP  402 (501)
Q Consensus       335 ~~~~~~~~--------~~~~~v~~v~~---~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  402 (501)
                      ++.+....        .+...+.++.+   +..-.+.|+|+-|+ |.|||+...+.       +..-.|..+|+.+.|.+
T Consensus       265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-------R~~c~he~~V~~l~w~~  337 (399)
T KOG0296|consen  265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-------RHICEHEDGVTKLKWLN  337 (399)
T ss_pred             ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-------heeccCCCceEEEEEcC
Confidence            44443333        34444555544   44567889999888 99999998653       44446888999999999


Q ss_pred             CeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          403 YKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       403 ~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ..++++++.||.|+.||.++|+++.++     .+|...|.+++++|++++++++|  .|+..+||++.
T Consensus       338 t~~l~t~c~~g~v~~wDaRtG~l~~~y-----~GH~~~Il~f~ls~~~~~vvT~s--~D~~a~VF~v~  398 (399)
T KOG0296|consen  338 TDYLLTACANGKVRQWDARTGQLKFTY-----TGHQMGILDFALSPQKRLVVTVS--DDNTALVFEVP  398 (399)
T ss_pred             cchheeeccCceEEeeeccccceEEEE-----ecCchheeEEEEcCCCcEEEEec--CCCeEEEEecC
Confidence            856666679999999999999999999     67889999999999999999999  77999999864

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.8e-37  Score=272.78  Aligned_cols=373  Identities=14%  Similarity=0.158  Sum_probs=283.8

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccc-ccccceecccCCcceeEEEeeccCc----------------
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS-ESYYRATLSDHKARITCMRLFPLHE----------------  166 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~-~~~~~~~~~~h~~~V~~~~~~~~~~----------------  166 (501)
                      ..|..|..+++-..++|.|-|+|+|...|.|+|||... +.-+...++.-.++|..++|+.++.                
T Consensus        53 ~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F  132 (603)
T KOG0318|consen   53 DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVF  132 (603)
T ss_pred             eeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEE
Confidence            45566777899999999999999999999999999754 2222333444455566666655433                


Q ss_pred             ---------------CcccccCCCCc-CcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784          167 ---------------TSLFRSEPQRT-ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG  228 (501)
Q Consensus       167 ---------------~~~~~~~~~~~-~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg  228 (501)
                                     .-+.++++-|. .-+++||+.|++|.+|+  --+...+++.|..-|.|+.|+    |+|.+++++
T Consensus       133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys----PDG~~Fat~  208 (603)
T KOG0318|consen  133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS----PDGSRFATA  208 (603)
T ss_pred             EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC----CCCCeEEEe
Confidence                           11233333333 35788888888888887  445556778899999999997    899999999


Q ss_pred             eCCCcEEEEeccCCCccccccceeecc---CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceec
Q 010784          229 GEDATVRLWSLSSSGKRGQQALKATLY---GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV  305 (501)
Q Consensus       229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~  305 (501)
                      +.||.|.+||-.++++      +..+.   +|.+.|.+++|+| ++..+++++.|.+++|||+.+.+.+..+.....  .
T Consensus       209 gsDgki~iyDGktge~------vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~--v  279 (603)
T KOG0318|consen  209 GSDGKIYIYDGKTGEK------VGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST--V  279 (603)
T ss_pred             cCCccEEEEcCCCccE------EEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCc--h
Confidence            9999999999999885      55555   8999999999999 888999999999999999999977665544333  3


Q ss_pred             CCCceeeecCCCeEE-EEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCC--
Q 010784          306 PGVPVDMKCHESMLY-IASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVK--  381 (501)
Q Consensus       306 ~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~--  381 (501)
                      ......+-+..+.++ +..++.+..++......+..+.+|...|+++..+|++.+|++|+.|+ |.-|+..++..-..  
T Consensus       280 ~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g  359 (603)
T KOG0318|consen  280 EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG  359 (603)
T ss_pred             hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc
Confidence            334444445554444 44567999999999999999999999999999999999999999999 99999876543200  


Q ss_pred             ---C-------------------------------------------CC-------------------cccccCc-----
Q 010784          382 ---P-------------------------------------------QP-------------------MAELDGH-----  391 (501)
Q Consensus       382 ---~-------------------------------------------~~-------------------~~~~~~h-----  391 (501)
                         .                                           +|                   +..++.+     
T Consensus       360 ~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~  439 (603)
T KOG0318|consen  360 KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSS  439 (603)
T ss_pred             ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCccee
Confidence               0                                           00                   0001111     


Q ss_pred             ---ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784          392 ---VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR  467 (501)
Q Consensus       392 ---~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w  467 (501)
                         .-...+++++|+ ..++.|+.||.|+||.+..+.+......   ..|.++|++++||||+.+||++.  ..+.+.+|
T Consensus       440 ~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~---~~h~a~iT~vaySpd~~yla~~D--a~rkvv~y  514 (603)
T KOG0318|consen  440 IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL---LEHRAAITDVAYSPDGAYLAAGD--ASRKVVLY  514 (603)
T ss_pred             eccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee---ecccCCceEEEECCCCcEEEEec--cCCcEEEE
Confidence               113467888999 8888888999999999987554333211   56889999999999999999997  66999999


Q ss_pred             ecc----------------------CCccceeecCCCCceeeecccCCC
Q 010784          468 DFS----------------------NATCPVLKHEVQNDSKFWGPQCYS  494 (501)
Q Consensus       468 ~~~----------------------~~~~~~~s~~~d~~~~~w~~~~~~  494 (501)
                      |+.                      +....+++|+-|..+.+|++....
T Consensus       515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  515 DVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             EcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence            854                      455678899999999999987543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.2e-38  Score=273.78  Aligned_cols=304  Identities=17%  Similarity=0.229  Sum_probs=257.3

Q ss_pred             EEEecCCCCceEEeeCCcE-EEeecCCeeeEEEEecccc-cc--cceec------ccC----CcceeEEEeeccCcCccc
Q 010784          105 CFYSVAKPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSE-SY--YRATL------SDH----KARITCMRLFPLHETSLF  170 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~-~~--~~~~~------~~h----~~~V~~~~~~~~~~~~~~  170 (501)
                      ....|..+|.+.+|+|-.. .+++|+.+-..++|++... ..  ....|      .++    ...|++++|+.       
T Consensus       173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~-------  245 (524)
T KOG0273|consen  173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN-------  245 (524)
T ss_pred             eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC-------
Confidence            3444778899999999887 9999999999999998731 00  11111      112    35699999998       


Q ss_pred             ccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccc
Q 010784          171 RSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQA  249 (501)
Q Consensus       171 ~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  249 (501)
                            +|..||+|+.||.+++|+ .|..+.++..|.++|.++.|.    .+|++|++++.|+++.+||..++.      
T Consensus       246 ------~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWn----k~G~yilS~~vD~ttilwd~~~g~------  309 (524)
T KOG0273|consen  246 ------DGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWN----KKGTYILSGGVDGTTILWDAHTGT------  309 (524)
T ss_pred             ------CCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEc----CCCCEEEeccCCccEEEEeccCce------
Confidence                  899999999999999999 999999999999999999996    899999999999999999999887      


Q ss_pred             ceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784          250 LKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT  329 (501)
Q Consensus       250 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  329 (501)
                      ..+.+.-|..+-..+.|-  +...|++++.|+.|+|+-+....                                     
T Consensus       310 ~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~-------------------------------------  350 (524)
T KOG0273|consen  310 VKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR-------------------------------------  350 (524)
T ss_pred             EEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCC-------------------------------------
Confidence            467777888886778886  56689999999999999887653                                     


Q ss_pred             EEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-----
Q 010784          330 IDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-----  403 (501)
Q Consensus       330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----  403 (501)
                             ++.++.+|.++|.++.|+|.|.+|+++++|+ ++||.+......      ..++.|...|+.+.|+|.     
T Consensus       351 -------P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~------~~l~~Hskei~t~~wsp~g~v~~  417 (524)
T KOG0273|consen  351 -------PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV------HDLQAHSKEIYTIKWSPTGPVTS  417 (524)
T ss_pred             -------cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch------hhhhhhccceeeEeecCCCCccC
Confidence                   4467788999999999999999999999999 999999886554      899999999999999873     


Q ss_pred             -----eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccceee
Q 010784          404 -----KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLK  478 (501)
Q Consensus       404 -----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s  478 (501)
                           ..+++++.|++|++||+..+.++.+|     ..|..+|.+++|+|+|+++++|+  -||.|.+|+...+......
T Consensus       418 n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-----~kH~~pVysvafS~~g~ylAsGs--~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  418 NPNMNLMLASASFDSTVKLWDVESGVPIHTL-----MKHQEPVYSVAFSPNGRYLASGS--LDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             CCcCCceEEEeecCCeEEEEEccCCceeEee-----ccCCCceEEEEecCCCcEEEecC--CCCeeEeccccchheeEee
Confidence                 46777789999999999999999999     67889999999999999999999  5599999999988866656


Q ss_pred             cCCCC-ceeeecc
Q 010784          479 HEVQN-DSKFWGP  490 (501)
Q Consensus       479 ~~~d~-~~~~w~~  490 (501)
                      .+.++ .--.|+.
T Consensus       491 ~~~~~Ifel~Wn~  503 (524)
T KOG0273|consen  491 QGTGGIFELCWNA  503 (524)
T ss_pred             cCCCeEEEEEEcC
Confidence            65555 3344544

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.5e-37  Score=251.14  Aligned_cols=290  Identities=16%  Similarity=0.233  Sum_probs=242.1

Q ss_pred             EEecCCCCceEEeeCC-cEEEeecCCeeeEEEEecccc--cccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          106 FYSVAKPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSE--SYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~--~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      ...+...+-.++++|. |..||+++.|+.|++|+...+  ..+...+ .+|+..|++++|+|             .|++|
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-------------~g~~L   76 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-------------HGRYL   76 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-------------CCcEE
Confidence            3445556889999998 999999999999999998842  2233333 47999999999999             89999


Q ss_pred             EEeeCCCceEEec----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          182 VTSSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       182 ~s~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      ++|+.|.++.||.    ..+++.++.+|+..|.|++|+    ++|++||+++.|..|-||.+..+.   +..+...+..|
T Consensus        77 a~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws----~sG~~LATCSRDKSVWiWe~dedd---Efec~aVL~~H  149 (312)
T KOG0645|consen   77 ASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS----ASGNYLATCSRDKSVWIWEIDEDD---EFECIAVLQEH  149 (312)
T ss_pred             EEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc----CCCCEEEEeeCCCeEEEEEecCCC---cEEEEeeeccc
Confidence            9999999999996    457899999999999999997    899999999999999999998554   35678899999


Q ss_pred             CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784          258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  337 (501)
                      +..|..+.|+| ...+|+++|.|.+|++|+-...                                         ....+
T Consensus       150 tqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~d-----------------------------------------ddW~c  187 (312)
T KOG0645|consen  150 TQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDD-----------------------------------------DDWEC  187 (312)
T ss_pred             cccccEEEEcC-CcceeEEeccCCeEEEEeecCC-----------------------------------------CCeeE
Confidence            99999999998 6779999999999999987632                                         12345


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEE
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRIN  416 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~  416 (501)
                      ..++.+|...|.+++|++.|..|+++++|+ ++||...+.          .-..|...++.+.|. +.+|++++.|+.|+
T Consensus       188 ~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----------~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~  256 (312)
T KOG0645|consen  188 VQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----------LSGMHSRALYDVPWD-NGVIASGGGDDAIR  256 (312)
T ss_pred             EEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----------cchhcccceEeeeec-ccceEeccCCCEEE
Confidence            678889999999999999999999999999 999997742          222467899999999 77888888999999


Q ss_pred             EEeCCCc--ccccccccCCCCCCCcceeeeEeecc-ccEEEEeecCCCceEEEeecc
Q 010784          417 IWETDTG--MLANSLLCNYPEEADISTGCSAMAVS-GCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       417 iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +|.-...  .+...+..+....|...|+++.|.|. ..+|++|+  +||.|++|.+.
T Consensus       257 lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~--DDG~v~~W~l~  311 (312)
T KOG0645|consen  257 LFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG--DDGIVNFWELE  311 (312)
T ss_pred             EEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC--CCceEEEEEec
Confidence            9987642  22223333334678889999999995 67889998  67999999874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.2e-37  Score=281.67  Aligned_cols=357  Identities=15%  Similarity=0.170  Sum_probs=285.2

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-------ccceecccCCcceeEEEeeccCcCcccccCCCC
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-------YYRATLSDHKARITCMRLFPLHETSLFRSEPQR  176 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~  176 (501)
                      ...+.-..++.|+.|+|||+++|.|.. +.+.||......       ...+++.||-+.|.++.|+.             
T Consensus        90 lh~f~fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~-------------  155 (893)
T KOG0291|consen   90 LHRFNFKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSD-------------  155 (893)
T ss_pred             eEEEeecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEecc-------------
Confidence            344456678999999999999998864 789999876432       34567789999999999998             


Q ss_pred             cCcEEEEeeCCCceEEec----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc--------
Q 010784          177 TENVLVTSSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK--------  244 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~--------  244 (501)
                      |.++|++|+.|-+++||.    .+-....+.+|...|.+.-|.    .+...+++.+.||.+.+|.......        
T Consensus       156 DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~----~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd  231 (893)
T KOG0291|consen  156 DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFG----ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKD  231 (893)
T ss_pred             CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEec----cCcceEEEEecCceEEEEEecCCCccccccccc
Confidence            899999999999999997    333456788999999999886    7888899999999999998872110        


Q ss_pred             -----------ccc-------ccc--eeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784          245 -----------RGQ-------QAL--KATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       245 -----------~~~-------~~~--~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                                 ..+       +..  ...+......|++.+|++ ..+.|++|-..|...+|.+.....+.      ...
T Consensus       232 ~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih------~LS  304 (893)
T KOG0291|consen  232 EEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIH------SLS  304 (893)
T ss_pred             ccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEE------Eee
Confidence                       000       000  111222336789999997 78899999999999999998875443      333


Q ss_pred             cC-CCceeeecCCCeEEEE--eCC--cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784          305 VP-GVPVDMKCHESMLYIA--SGS--SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD  378 (501)
Q Consensus       305 ~~-~~~~~~~~~~~~~~~~--~~~--~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~  378 (501)
                      .. ..+..+.++..+-+++  +..  ++.+|+.++...+...++|...+++++++|||+++++|++|+ |+|||..++-+
T Consensus       305 is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC  384 (893)
T KOG0291|consen  305 ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC  384 (893)
T ss_pred             cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence            33 4556666765554554  443  899999999999999999999999999999999999999999 99999999765


Q ss_pred             CCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCC-----------------------
Q 010784          379 AVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP-----------------------  434 (501)
Q Consensus       379 ~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~-----------------------  434 (501)
                      .      .+|..|+..|+.+.|+.. +.+.+.|.||+|+.||+...+..++|....+                       
T Consensus       385 ~------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F  458 (893)
T KOG0291|consen  385 F------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF  458 (893)
T ss_pred             E------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence            5      999999999999999999 8888889999999999876555444432211                       


Q ss_pred             ----------------CCCCcceeeeEeeccccEEEEeecCCCceEEEee---------------------ccCCcccee
Q 010784          435 ----------------EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD---------------------FSNATCPVL  477 (501)
Q Consensus       435 ----------------~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~---------------------~~~~~~~~~  477 (501)
                                      .+|.++|.+++|+|+|..|+++|+|  .+|++||                     +.+++..++
T Consensus       459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--kTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ela  536 (893)
T KOG0291|consen  459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--KTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELA  536 (893)
T ss_pred             EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--ceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEE
Confidence                            4789999999999999999999976  9999998                     456677788


Q ss_pred             ecCCCCceeeecccCC
Q 010784          478 KHEVQNDSKFWGPQCY  493 (501)
Q Consensus       478 s~~~d~~~~~w~~~~~  493 (501)
                      ....||.+-+|++...
T Consensus       537 VaTldgqItf~d~~~~  552 (893)
T KOG0291|consen  537 VATLDGQITFFDIKEA  552 (893)
T ss_pred             EEEecceEEEEEhhhc
Confidence            8888999999987644

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.2e-38  Score=266.82  Aligned_cols=270  Identities=21%  Similarity=0.346  Sum_probs=239.4

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~  220 (501)
                      .++.+.+++|.+.|.|+++.|             .+..|+||+.|++|+|||  ++++..++.+|...|..+++|    +
T Consensus       141 wKl~rVi~gHlgWVr~vavdP-------------~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS----~  203 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDP-------------GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVS----K  203 (460)
T ss_pred             ceehhhhhhccceEEEEeeCC-------------CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeec----c
Confidence            356678899999999999999             689999999999999999  899999999999999999998    6


Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      .-.|+++++.|+.|+.||++.++      .+..+.+|-..|.+++.+| .-..|++|+.|.++++||+++..        
T Consensus       204 rHpYlFs~gedk~VKCwDLe~nk------vIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~--------  268 (460)
T KOG0285|consen  204 RHPYLFSAGEDKQVKCWDLEYNK------VIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRA--------  268 (460)
T ss_pred             cCceEEEecCCCeeEEEechhhh------hHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccc--------
Confidence            77899999999999999999987      5899999999999999998 66799999999999999999863        


Q ss_pred             cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                                                          .+..+.+|..+|.++.+.|-.-.+++|+.|. |++||++.++..
T Consensus       269 ------------------------------------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~  312 (460)
T KOG0285|consen  269 ------------------------------------SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM  312 (460)
T ss_pred             ------------------------------------eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee
Confidence                                                4567889999999999999888999999888 999999998765


Q ss_pred             CCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          380 VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       380 ~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                            .++..|...|.+++.+|. ..+|+++.| .|+-|++..|..+..+     .+|...|++++...|| ++++|+ 
T Consensus       313 ------~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl-----sgh~~iintl~~nsD~-v~~~G~-  378 (460)
T KOG0285|consen  313 ------ITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL-----SGHNAIINTLSVNSDG-VLVSGG-  378 (460)
T ss_pred             ------EeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc-----ccccceeeeeeeccCc-eEEEcC-
Confidence                  888899999999999999 888888666 5999999999999998     6788899999998887 777787 


Q ss_pred             CCCceEEEeeccC-----------------------------CccceeecCCCCceeeecccCCCC
Q 010784          459 GEPGLLQFRDFSN-----------------------------ATCPVLKHEVQNDSKFWGPQCYSD  495 (501)
Q Consensus       459 d~~g~i~~w~~~~-----------------------------~~~~~~s~~~d~~~~~w~~~~~~~  495 (501)
                       ++|.+.+||...                             .+.+++++..|.+|++|.-+....
T Consensus       379 -dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT  443 (460)
T KOG0285|consen  379 -DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHAT  443 (460)
T ss_pred             -CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccccC
Confidence             789999999543                             334577889999999997654433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.2e-37  Score=282.74  Aligned_cols=330  Identities=17%  Similarity=0.211  Sum_probs=275.9

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      ...+..++|.+|++.-..+|+|-..|...++.+.. ..+++.+.--..+|..+.|+.             .|+.|+.|+.
T Consensus       262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSis~~~I~t~~~N~-------------tGDWiA~g~~  327 (893)
T KOG0291|consen  262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSISDQKILTVSFNS-------------TGDWIAFGCS  327 (893)
T ss_pred             cccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeecccceeeEEEecc-------------cCCEEEEcCC
Confidence            33446799999999999999999999999999987 588888888888999999988             7899999886


Q ss_pred             C-CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          187 D-HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       187 d-g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      . |.+-||+  ...-+...++|...+++++++    |||+++++|+.||.|+|||...+-      +..++..|+..|+.
T Consensus       328 klgQLlVweWqsEsYVlKQQgH~~~i~~l~YS----pDgq~iaTG~eDgKVKvWn~~Sgf------C~vTFteHts~Vt~  397 (893)
T KOG0291|consen  328 KLGQLLVWEWQSESYVLKQQGHSDRITSLAYS----PDGQLIATGAEDGKVKVWNTQSGF------CFVTFTEHTSGVTA  397 (893)
T ss_pred             ccceEEEEEeeccceeeeccccccceeeEEEC----CCCcEEEeccCCCcEEEEeccCce------EEEEeccCCCceEE
Confidence            5 8999999  666677788999999999997    899999999999999999999876      69999999999999


Q ss_pred             EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC----cEEEEEcCCCceEe
Q 010784          264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS----SVVTIDLRTMQKVM  339 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~d~~~~~~~~  339 (501)
                      +.|+. .++.+++.+-||+|+.||+.....-+.+..    ..+....+++.++.+.++..|.    .|.+|++++|+.+-
T Consensus       398 v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD  472 (893)
T KOG0291|consen  398 VQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTS----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD  472 (893)
T ss_pred             EEEEe-cCCEEEEeecCCeEEeeeecccceeeeecC----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee
Confidence            99996 889999999999999999988755443332    2223344566666666665554    79999999999999


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i  417 (501)
                      .+.+|+++|.+++|+|++..|+++|.|+ ||+||+-.....     +.+++ +...+..++|+|+ +-++.++.||.|.+
T Consensus       473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-----vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf  546 (893)
T KOG0291|consen  473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-----VETLE-IRSDVLAVSFRPDGKELAVATLDGQITF  546 (893)
T ss_pred             hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-----eeeEe-eccceeEEEEcCCCCeEEEEEecceEEE
Confidence            9999999999999999999999999999 999999775322     23343 4677999999999 77777789999999


Q ss_pred             EeCCCcccccccccCC---------------CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          418 WETDTGMLANSLLCNY---------------PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~---------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      ||+..+..+.++.+..               ........+.+++|+||..|++||  +...|++|++.++-
T Consensus       547 ~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG--~sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  547 FDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG--ESNSICIYDVPEGV  615 (893)
T ss_pred             EEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC--CcccEEEEECchhh
Confidence            9998776664443221               112345688999999999999999  77999999987654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.8e-38  Score=289.96  Aligned_cols=245  Identities=23%  Similarity=0.354  Sum_probs=221.4

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc------------------------------cccceecccCCc
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE------------------------------SYYRATLSDHKA  154 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~------------------------------~~~~~~~~~h~~  154 (501)
                      ++......++|..|++++.++|.|..|-.|++|.+...                              ....+++.||.+
T Consensus       373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G  452 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG  452 (707)
T ss_pred             EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence            34445667999999999999999999999999987621                              123455789999


Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA  232 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg  232 (501)
                      +|..+.|+|             +.++|++++.|+++|+|.  +..++-.+++|..+|.++.|+    |.|-++|||+.|+
T Consensus       453 PVyg~sFsP-------------d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~----P~GyYFatas~D~  515 (707)
T KOG0263|consen  453 PVYGCSFSP-------------DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA----PRGYYFATASHDQ  515 (707)
T ss_pred             ceeeeeecc-------------cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec----CCceEEEecCCCc
Confidence            999999999             899999999999999998  788888999999999999997    8899999999999


Q ss_pred             cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceee
Q 010784          233 TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM  312 (501)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  312 (501)
                      +.++|..+...      +...+.+|.+.|.|+.|+| +.+++++||.|.+|++||+.++.                    
T Consensus       516 tArLWs~d~~~------PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~--------------------  568 (707)
T KOG0263|consen  516 TARLWSTDHNK------PLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGN--------------------  568 (707)
T ss_pred             eeeeeecccCC------chhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCc--------------------
Confidence            99999999866      5889999999999999999 78999999999999999998874                    


Q ss_pred             ecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc
Q 010784          313 KCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH  391 (501)
Q Consensus       313 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h  391 (501)
                                              .++.|.+|.++|.+++|+|+|++|++|++++ |.+||+.+++.+      ..+.+|
T Consensus       569 ------------------------~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v------~~l~~H  618 (707)
T KOG0263|consen  569 ------------------------SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV------KQLKGH  618 (707)
T ss_pred             ------------------------EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch------hhhhcc
Confidence                                    3456788999999999999999999999999 999999997665      899999


Q ss_pred             ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc
Q 010784          392 VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       392 ~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~  423 (501)
                      .+.|+++.|+.+ .+||+|+.|++|++||+..-
T Consensus       619 t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  619 TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999999 99999999999999998753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1e-37  Score=257.01  Aligned_cols=287  Identities=19%  Similarity=0.299  Sum_probs=243.4

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCc--eeeeccCCCCceEEEEeeecCC
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS--CQRCFKGHNGPVSTLSDKLLGD  219 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~--~~~~~~~h~~~v~~l~~s~~~~  219 (501)
                      ..++..+.+|++.|+.+.|+|             +|.+|+||+.|..|.+|+ .+.  -...+++|.++|..+.|.    
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P-------------~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~----   99 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHP-------------DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGM----   99 (338)
T ss_pred             cchhhhcCCCcceEEEEEECC-------------CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeec----
Confidence            356677889999999999999             899999999999999999 443  345678999999999996    


Q ss_pred             CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784          220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                      .+++.+++++.|.+|+.||.++++.      ...+++|..-|+.+.-...+..++.+++.||++++||+++...+..   
T Consensus       100 ~d~s~i~S~gtDk~v~~wD~~tG~~------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t---  170 (338)
T KOG0265|consen  100 RDGSHILSCGTDKTVRGWDAETGKR------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT---  170 (338)
T ss_pred             cCCCEEEEecCCceEEEEeccccee------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc---
Confidence            8999999999999999999999984      8899999999998886655678899999999999999998754433   


Q ss_pred             ccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784          300 VGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~  375 (501)
                         ........++.+....--+.++   +.|++||++.....+.+.+|.++|+.+..+|+|.++.+-+.|. +++||++.
T Consensus       171 ---~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  171 ---FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             ---cccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence               2334445566666554444444   4899999999999999999999999999999999999999888 99999997


Q ss_pred             CCCCCCCCCcccccCccc----CeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784          376 SQDAVKPQPMAELDGHVG----SVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG  450 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~----~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  450 (501)
                      ....  .+++..+.+|..    ....++|+|+ ..+.+|+.|..+++||..+...+..+     .+|.+.|+.+.|+|..
T Consensus       248 ~~p~--~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-----pGh~gsvn~~~Fhp~e  320 (338)
T KOG0265|consen  248 FAPS--QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-----PGHYGSVNEVDFHPTE  320 (338)
T ss_pred             cCCC--CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-----CCcceeEEEeeecCCC
Confidence            6554  344677777643    3456789999 99999999999999999988899999     6788999999999999


Q ss_pred             cEEEEeecCCCceEEEe
Q 010784          451 CRIVTASYGEPGLLQFR  467 (501)
Q Consensus       451 ~~l~s~~~d~~g~i~~w  467 (501)
                      .+|.+++  .|.+|++=
T Consensus       321 ~iils~~--sdk~i~lg  335 (338)
T KOG0265|consen  321 PIILSCS--SDKTIYLG  335 (338)
T ss_pred             cEEEEec--cCceeEee
Confidence            9999999  45888763

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-38  Score=264.28  Aligned_cols=266  Identities=23%  Similarity=0.361  Sum_probs=240.9

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      .....+.+|...|+.+-|+|             +-..+++++.|++|++||  ++++...+++|+..|.+++|+    ..
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp-------------~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~----a~  161 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHP-------------SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFD----AS  161 (406)
T ss_pred             Cchhhhhccccceeeeeecc-------------CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEe----cC
Confidence            55667889999999999999             788999999999999999  888999999999999999996    88


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      |.++++++.|-.+++||+.+...     ++..+.+|...|.++.|.| .+.++++++.|.+|+.|++.++          
T Consensus       162 Gk~l~tcSsDl~~~LWd~~~~~~-----c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg----------  225 (406)
T KOG0295|consen  162 GKYLATCSSDLSAKLWDFDTFFR-----CIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTG----------  225 (406)
T ss_pred             ccEEEecCCccchhheeHHHHHH-----HHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccc----------
Confidence            99999999999999999988543     7888999999999999999 6789999999999999999887          


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV  380 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  380 (501)
                                                        .++.++.+|...|..++.+.||.++++++.|. +++|-+.+.++. 
T Consensus       226 ----------------------------------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k-  270 (406)
T KOG0295|consen  226 ----------------------------------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK-  270 (406)
T ss_pred             ----------------------------------eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh-
Confidence                                              34567888999999999999999999999999 999999997665 


Q ss_pred             CCCCcccccCcccCeEEEEecCC----------------eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeee
Q 010784          381 KPQPMAELDGHVGSVTQLHMDPY----------------KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCS  444 (501)
Q Consensus       381 ~~~~~~~~~~h~~~v~~l~~~~~----------------~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  444 (501)
                           ..+..|+.+|.+++|-|.                .+++++|.|++|++||+.++.++.++     .+|.++|..+
T Consensus       271 -----~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL-----~ghdnwVr~~  340 (406)
T KOG0295|consen  271 -----AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL-----VGHDNWVRGV  340 (406)
T ss_pred             -----hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE-----ecccceeeee
Confidence                 889999999999999651                48999999999999999999999999     7889999999


Q ss_pred             EeeccccEEEEeecCCCceEEEeeccCCc---------------------cceeecCCCCceeeec
Q 010784          445 AMAVSGCRIVTASYGEPGLLQFRDFSNAT---------------------CPVLKHEVQNDSKFWG  489 (501)
Q Consensus       445 ~~s~~g~~l~s~~~d~~g~i~~w~~~~~~---------------------~~~~s~~~d~~~~~w~  489 (501)
                      +|+|.|+||+++.  +|+++++||+.+.+                     ..+++|+-|.++++|.
T Consensus       341 af~p~Gkyi~Sca--DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  341 AFSPGGKYILSCA--DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EEcCCCeEEEEEe--cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            9999999999999  78999999977544                     2356899999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.4e-37  Score=284.16  Aligned_cols=328  Identities=19%  Similarity=0.231  Sum_probs=284.2

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      .++|+.-+++...+|.|-.||.|++|+..++ ....++.||+..|+++.|..             .|..|+|||.|+.|.
T Consensus        67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~-~~~~tfngHK~AVt~l~fd~-------------~G~rlaSGskDt~II  132 (888)
T KOG0306|consen   67 EVTCLRSSDDILLLAVGYADGSVQIFSLESE-EILITFNGHKAAVTTLKFDK-------------IGTRLASGSKDTDII  132 (888)
T ss_pred             eEEEeeccCCcceEEEEecCceEEeeccCCC-ceeeeecccccceEEEEEcc-------------cCceEeecCCCccEE
Confidence            5899999999999999999999999999985 88889999999999999998             899999999999999


Q ss_pred             Eec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc-------------------------
Q 010784          192 LWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK-------------------------  244 (501)
Q Consensus       192 vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-------------------------  244 (501)
                      |||  ...-+..+++|...|+.+-|.    .+.+++++.+.|+.|++||+.+...                         
T Consensus       133 vwDlV~E~Gl~rL~GHkd~iT~~~F~----~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~  208 (888)
T KOG0306|consen  133 VWDLVGEEGLFRLRGHKDSITQALFL----NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAG  208 (888)
T ss_pred             EEEeccceeeEEeecchHHHhHHhcc----CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEe
Confidence            999  455567888999999988886    5678888889999999998877533                         


Q ss_pred             --------------------------------------------------------------------------------
Q 010784          245 --------------------------------------------------------------------------------  244 (501)
Q Consensus       245 --------------------------------------------------------------------------------  244 (501)
                                                                                                      
T Consensus       209 ~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k  288 (888)
T KOG0306|consen  209 TDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLK  288 (888)
T ss_pred             cCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 010784          245 --------------------------------------------------------------------------------  244 (501)
Q Consensus       245 --------------------------------------------------------------------------------  244 (501)
                                                                                                      
T Consensus       289 ~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~  368 (888)
T KOG0306|consen  289 RAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIE  368 (888)
T ss_pred             HhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceee
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------cc--------ccccee
Q 010784          245 ----------------------------------------------------------------RG--------QQALKA  252 (501)
Q Consensus       245 ----------------------------------------------------------------~~--------~~~~~~  252 (501)
                                                                                      .+        ...++.
T Consensus       369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E  448 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE  448 (888)
T ss_pred             eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence                                                                            11        112334


Q ss_pred             eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcc-------ccceecccceecCCCceeeecCCCeEEEEeC-
Q 010784          253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSA-------VRSSCCVGMTSVPGVPVDMKCHESMLYIASG-  324 (501)
Q Consensus       253 ~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  324 (501)
                      +.+.|.+.|..++.+| ++..+++||.|.+|++||..-...       ..+.........+..+.++..+|++.+++.+ 
T Consensus       449 ti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL  527 (888)
T KOG0306|consen  449 TIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL  527 (888)
T ss_pred             hhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence            5568999999999998 788999999999999999753221       1112223344778889999999999888875 


Q ss_pred             --CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec
Q 010784          325 --SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD  401 (501)
Q Consensus       325 --~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  401 (501)
                        +++++|-+.+.+-...+.+|.-+|.|+.++||+++++|||.|+ |++|-+.-+.+-      ..+-+|...|+++.|-
T Consensus       528 LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH------KS~fAHdDSvm~V~F~  601 (888)
T KOG0306|consen  528 LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH------KSFFAHDDSVMSVQFL  601 (888)
T ss_pred             ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh------hhhhcccCceeEEEEc
Confidence              6999999999999999999999999999999999999999999 999999998776      8899999999999999


Q ss_pred             CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          402 PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       402 ~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      |. .++.+++.|+.|+-||-...+.++.+     .+|...|.+++.+|+|.+++++|  +|..|++|.-..
T Consensus       602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-----~~H~~ev~cLav~~~G~~vvs~s--hD~sIRlwE~td  665 (888)
T KOG0306|consen  602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKL-----DGHHSEVWCLAVSPNGSFVVSSS--HDKSIRLWERTD  665 (888)
T ss_pred             ccceeEEEecCcceEEeechhhhhhheee-----ccchheeeeeEEcCCCCeEEecc--CCceeEeeeccC
Confidence            99 77777789999999999999999999     67888999999999999999999  779999998554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.5e-38  Score=266.90  Aligned_cols=256  Identities=20%  Similarity=0.411  Sum_probs=221.9

Q ss_pred             CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee
Q 010784          152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG  229 (501)
Q Consensus       152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~  229 (501)
                      ....|+|+.+               |...+++|..|++|+|||  ...+.+.+.+|++.|.|+.|      +.+.+++|+
T Consensus       196 ~skgVYClQY---------------DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy------d~rviisGS  254 (499)
T KOG0281|consen  196 NSKGVYCLQY---------------DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY------DERVIVSGS  254 (499)
T ss_pred             cCCceEEEEe---------------cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec------cceEEEecC
Confidence            4567999998               568999999999999999  66788999999999999997      456999999


Q ss_pred             CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc
Q 010784          230 EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP  309 (501)
Q Consensus       230 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  309 (501)
                      .|.+|++||.++++      ++.++.+|...|..+.|+.   .++++++.|.++.+||+.....+               
T Consensus       255 SDsTvrvWDv~tge------~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i---------------  310 (499)
T KOG0281|consen  255 SDSTVRVWDVNTGE------PLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI---------------  310 (499)
T ss_pred             CCceEEEEeccCCc------hhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH---------------
Confidence            99999999999998      5899999999999999973   49999999999999999876421               


Q ss_pred             eeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc
Q 010784          310 VDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL  388 (501)
Q Consensus       310 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~  388 (501)
                                                ...+.+.+|...|+.+.|  +.+++++++.|. |++|++.+.+.+      .++
T Consensus       311 --------------------------t~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efv------Rtl  356 (499)
T KOG0281|consen  311 --------------------------TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFV------RTL  356 (499)
T ss_pred             --------------------------HHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeee------hhh
Confidence                                      123456789999999999  566999999999 999999997655      999


Q ss_pred             cCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          389 DGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       389 ~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      .+|...|-|+.+. ++++++||.|.+|++||++.|.+++.+     .+|..-|.++.|  |.+.|++|++|  |.|++||
T Consensus       357 ~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~~G~cLRvL-----eGHEeLvRciRF--d~krIVSGaYD--GkikvWd  426 (499)
T KOG0281|consen  357 NGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRCIRF--DNKRIVSGAYD--GKIKVWD  426 (499)
T ss_pred             hcccccceehhcc-CeEEEecCCCceEEEEeccccHHHHHH-----hchHHhhhheee--cCceeeecccc--ceEEEEe
Confidence            9999999888764 379999999999999999999999999     677888999999  78899999977  9999999


Q ss_pred             ccCCc----------------------------cceeecCCCCceeeecccCCCCC
Q 010784          469 FSNAT----------------------------CPVLKHEVQNDSKFWGPQCYSDT  496 (501)
Q Consensus       469 ~~~~~----------------------------~~~~s~~~d~~~~~w~~~~~~~~  496 (501)
                      +..+.                            ..+++.+.|.++-+|++..+.+.
T Consensus       427 l~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  427 LQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             cccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence            76433                            34678899999999998766543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-37  Score=277.04  Aligned_cols=278  Identities=17%  Similarity=0.274  Sum_probs=250.6

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      +...|.++.++|...+++++-..|.+.||+.++ ...++.+.-..-+|.+..|.+             ..+.+++|+.|.
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyet-qtmVksfeV~~~PvRa~kfia-------------RknWiv~GsDD~   77 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYET-QTMVKSFEVSEVPVRAAKFIA-------------RKNWIVTGSDDM   77 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEeccc-ceeeeeeeecccchhhheeee-------------ccceEEEecCCc
Confidence            455689999999999999999999999999998 488888888889999999998             789999999999


Q ss_pred             ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784          189 SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       189 ~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                      .|+||+  ++..+..|.+|..-|+|++.+    |...+++|+|.|-+|++||.+.+=     .+.+++.+|+..|.+++|
T Consensus        78 ~IrVfnynt~ekV~~FeAH~DyIR~iavH----Pt~P~vLtsSDDm~iKlW~we~~w-----a~~qtfeGH~HyVMqv~f  148 (794)
T KOG0276|consen   78 QIRVFNYNTGEKVKTFEAHSDYIRSIAVH----PTLPYVLTSSDDMTIKLWDWENEW-----ACEQTFEGHEHYVMQVAF  148 (794)
T ss_pred             eEEEEecccceeeEEeeccccceeeeeec----CCCCeEEecCCccEEEEeeccCce-----eeeeEEcCcceEEEEEEe
Confidence            999998  889999999999999999998    788899999999999999998764     388999999999999999


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP  346 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  346 (501)
                      .|.+.+.+++++-|++|+||.+.+..                                            +..++.+|..
T Consensus       149 nPkD~ntFaS~sLDrTVKVWslgs~~--------------------------------------------~nfTl~gHek  184 (794)
T KOG0276|consen  149 NPKDPNTFASASLDRTVKVWSLGSPH--------------------------------------------PNFTLEGHEK  184 (794)
T ss_pred             cCCCccceeeeeccccEEEEEcCCCC--------------------------------------------Cceeeecccc
Confidence            99999999999999999999998753                                            3357789999


Q ss_pred             cEEEEEEcCCC--cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784          347 ILHSFSIMPSK--SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       347 ~v~~v~~~~~~--~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      .|+++.+-+.|  -+|++|++|. |+|||.++.+++      +++.||...|..+.|+|. .++++||.||+++||+..+
T Consensus       185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV------~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV------QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             CcceEEeccCCCcceEEecCCCceEEEeecchHHHH------HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence            99999998754  6999999999 999999997665      999999999999999999 9999999999999999999


Q ss_pred             cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784          423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQF  466 (501)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~  466 (501)
                      .++..++.     ....++.+++-.+.++.++.|.  +.|.|.+
T Consensus       259 y~lE~tLn-----~gleRvW~I~~~k~~~~i~vG~--Deg~i~v  295 (794)
T KOG0276|consen  259 YKLEKTLN-----YGLERVWCIAAHKGDGKIAVGF--DEGSVTV  295 (794)
T ss_pred             eehhhhhh-----cCCceEEEEeecCCCCeEEEec--cCCcEEE
Confidence            99888884     3456899999888888888886  4565543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.3e-36  Score=287.33  Aligned_cols=283  Identities=22%  Similarity=0.365  Sum_probs=247.6

Q ss_pred             CCCCceEEeeCCcEEEeecCCeeeEEEEecccccc--cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY--YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      ...+.|+.|+++|.++++++.++.+++|+..+. +  ..+.+.+|...|++++|+|             ++.++++++.|
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~-~~~~~~~l~~h~~~v~~~~fs~-------------d~~~l~s~s~D  224 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGI-KSNLLRELSGHTRGVSDVAFSP-------------DGSYLLSGSDD  224 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccc-cchhhccccccccceeeeEECC-------------CCcEEEEecCC
Confidence            566999999999999999999999999999764 4  7778899999999999999             88999999999


Q ss_pred             CceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          188 HSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       188 g~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      ++|+|||   .+..++++++|...|++++|+    +.++++++|+.|++|++||++++.      +...+.+|.+.|+++
T Consensus       225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~----p~g~~i~Sgs~D~tvriWd~~~~~------~~~~l~~hs~~is~~  294 (456)
T KOG0266|consen  225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS----PDGNLLVSGSDDGTVRIWDVRTGE------CVRKLKGHSDGISGL  294 (456)
T ss_pred             ceEEEeeccCCCeEEEEecCCCCceEEEEec----CCCCEEEEecCCCcEEEEeccCCe------EEEeeeccCCceEEE
Confidence            9999999   457899999999999999997    788999999999999999999966      699999999999999


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC  344 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  344 (501)
                      +|.+ ++++|++++.|+.|++||+.++...                                          ....+..+
T Consensus       295 ~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~------------------------------------------~~~~~~~~  331 (456)
T KOG0266|consen  295 AFSP-DGNLLVSASYDGTIRVWDLETGSKL------------------------------------------CLKLLSGA  331 (456)
T ss_pred             EECC-CCCEEEEcCCCccEEEEECCCCcee------------------------------------------eeecccCC
Confidence            9997 8889999999999999999988521                                          11222333


Q ss_pred             CC--cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEE---EEecCC-eEEEEecCCCcEEE
Q 010784          345 KP--ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQ---LHMDPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       345 ~~--~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~---l~~~~~-~~l~~gs~dg~i~i  417 (501)
                      ..  .++++.|+|++.++++++.|+ +++||++.+...      ..+.+|...+.+   ...++. .++++|+.|+.|++
T Consensus       332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~  405 (456)
T KOG0266|consen  332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV------GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV  405 (456)
T ss_pred             CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce------eeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence            33  599999999999999999998 999999997765      777788775433   344566 99999999999999


Q ss_pred             EeCCCcccccccccCCCCCC-CcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          418 WETDTGMLANSLLCNYPEEA-DISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ||+.++..+..+     .+| ...+..++++|...++++++.+.|+.+++|...
T Consensus       406 ~~~~s~~~~~~l-----~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  406 WDSSSGGILQRL-----EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EeCCccchhhhh-----cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999999999999     556 778999999999999999997778999999754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=8.2e-36  Score=239.30  Aligned_cols=264  Identities=17%  Similarity=0.271  Sum_probs=222.7

Q ss_pred             CCCCceEEeeCCcEEEeecCCeeeEEEEecccccc-cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY-YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      ...|+.+.+.|++.+||+++. ..|++||+.+++. ++.++.+|+..|+++.|..             +|+.++||+.||
T Consensus        40 dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-------------dgrWMyTgseDg  105 (311)
T KOG0315|consen   40 DSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-------------DGRWMYTGSEDG  105 (311)
T ss_pred             ccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEee-------------cCeEEEecCCCc
Confidence            445999999999999999986 6799999998754 8999999999999999998             899999999999


Q ss_pred             ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784          189 SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       189 ~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                      +++|||  ...+.+.+ .|.++|+++..+    |+...|++|..+|.|++||+.....     ....+.....+|.++.+
T Consensus       106 t~kIWdlR~~~~qR~~-~~~spVn~vvlh----pnQteLis~dqsg~irvWDl~~~~c-----~~~liPe~~~~i~sl~v  175 (311)
T KOG0315|consen  106 TVKIWDLRSLSCQRNY-QHNSPVNTVVLH----PNQTELISGDQSGNIRVWDLGENSC-----THELIPEDDTSIQSLTV  175 (311)
T ss_pred             eEEEEeccCcccchhc-cCCCCcceEEec----CCcceEEeecCCCcEEEEEccCCcc-----ccccCCCCCcceeeEEE
Confidence            999999  43444444 478999999997    7888999999999999999998753     22333445578999999


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP  346 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  346 (501)
                      .| ++.+++.+...|..++|++-+.+....                                      .+++..++.|++
T Consensus       176 ~~-dgsml~a~nnkG~cyvW~l~~~~~~s~--------------------------------------l~P~~k~~ah~~  216 (311)
T KOG0315|consen  176 MP-DGSMLAAANNKGNCYVWRLLNHQTASE--------------------------------------LEPVHKFQAHNG  216 (311)
T ss_pred             cC-CCcEEEEecCCccEEEEEccCCCcccc--------------------------------------ceEhhheecccc
Confidence            98 899999999999999999987533221                                      244567888999


Q ss_pred             cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc
Q 010784          347 ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM  424 (501)
Q Consensus       347 ~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~  424 (501)
                      .+..+.+|||+++|++++.|. ++||+....-     +.-..+++|...+...+||.+ ++|++|+.|+.+++|++..++
T Consensus       217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~-----kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFF-----KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             eEEEEEECCCCcEEEeecCCceEEEEecCCce-----eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence            999999999999999999999 9999998861     123678899999999999999 999999999999999999999


Q ss_pred             cccccccCCCCCCCcceeeeEe
Q 010784          425 LANSLLCNYPEEADISTGCSAM  446 (501)
Q Consensus       425 ~~~~~~~~~~~~~~~~v~~~~~  446 (501)
                      .++.+     .+|.....+++.
T Consensus       292 ~v~qy-----~gh~K~~vc~~l  308 (311)
T KOG0315|consen  292 EVRQY-----QGHHKAAVCVAL  308 (311)
T ss_pred             eeeec-----CCcccccEEEEe
Confidence            99999     455555555554

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=5.3e-36  Score=254.48  Aligned_cols=308  Identities=19%  Similarity=0.305  Sum_probs=245.4

Q ss_pred             HHHHHHhhhccccCCeeeEEEe---cCCC---------CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc
Q 010784           87 LARRIALLQFKFVDPLDVCFYS---VAKP---------HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA  154 (501)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~---~~~~---------i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~  154 (501)
                      +..+.....+..+..+...|..   .|++         |+++...  +.++.+|++||.+++||..  ++..+++.||.+
T Consensus        70 L~e~l~~kgiSsE~~leIEYv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~--Gk~~~~~~Ght~  145 (423)
T KOG0313|consen   70 LDEHLEEKGISSEEILEIEYVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK--GKSIKTIVGHTG  145 (423)
T ss_pred             HHHHHHHcCcChhheeEEEEEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecC--CceEEEEecCCc
Confidence            4444455555555555544333   2333         4444444  7999999999999999988  688999999999


Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C----CceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K----GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG  228 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~----~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg  228 (501)
                      +|.+++|.-.+          +....|++++.|.++++|.  .    -+.++..+||...|-++...    ++|..+++|
T Consensus       146 ~ik~v~~v~~n----------~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~----~sgtr~~Sg  211 (423)
T KOG0313|consen  146 PIKSVAWVIKN----------SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD----SSGTRFCSG  211 (423)
T ss_pred             ceeeeEEEecC----------CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEec----CCCCeEEee
Confidence            99999886521          1334799999999999995  2    23344556999999999985    899999999


Q ss_pred             eCCCcEEEEeccCCCc-------------------cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECC
Q 010784          229 GEDATVRLWSLSSSGK-------------------RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS  289 (501)
Q Consensus       229 ~~dg~i~iwd~~~~~~-------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~  289 (501)
                      +.|.+|++|+..+...                   .....++.++.+|+.+|.++.|++  ...+++++.|.+|+.||+.
T Consensus       212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDle  289 (423)
T KOG0313|consen  212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLE  289 (423)
T ss_pred             cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEee
Confidence            9999999999332111                   223456778899999999999984  6789999999999999999


Q ss_pred             CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-E
Q 010784          290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-A  368 (501)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i  368 (501)
                      ++......                                            . ....++++..+|..++|++|+.|. |
T Consensus       290 tg~~~~~~--------------------------------------------~-~~ksl~~i~~~~~~~Ll~~gssdr~i  324 (423)
T KOG0313|consen  290 TGGLKSTL--------------------------------------------T-TNKSLNCISYSPLSKLLASGSSDRHI  324 (423)
T ss_pred             cccceeee--------------------------------------------e-cCcceeEeecccccceeeecCCCCce
Confidence            98643221                                            1 256789999999999999999999 9


Q ss_pred             EEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcc-cccccccCCCCCCCcceeeeE
Q 010784          369 MTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGM-LANSLLCNYPEEADISTGCSA  445 (501)
Q Consensus       369 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~  445 (501)
                      ++||.+++.-   ....+++.+|.+.|.++.|+|.  ..|++|+.|+++++||+++.+ ++..+     .+|...|.++.
T Consensus       325 rl~DPR~~~g---s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-----~~h~DKvl~vd  396 (423)
T KOG0313|consen  325 RLWDPRTGDG---SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-----AGHNDKVLSVD  396 (423)
T ss_pred             eecCCCCCCC---ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-----ccCCceEEEEe
Confidence            9999998753   2446788999999999999998  889999999999999999977 89999     56788899999


Q ss_pred             eeccccEEEEeecCCCceEEEeecc
Q 010784          446 MAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       446 ~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      |. ++..|++||  .|..|+++.-.
T Consensus       397 W~-~~~~IvSGG--aD~~l~i~~~~  418 (423)
T KOG0313|consen  397 WN-EGGLIVSGG--ADNKLRIFKGS  418 (423)
T ss_pred             cc-CCceEEecc--CcceEEEeccc
Confidence            96 566999999  55999998654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.4e-37  Score=284.99  Aligned_cols=246  Identities=24%  Similarity=0.409  Sum_probs=217.7

Q ss_pred             cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCc------------------------------
Q 010784          149 LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS------------------------------  197 (501)
Q Consensus       149 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~------------------------------  197 (501)
                      +..-...++|..|++             ++.+||.|..|-.|++|. +.+                              
T Consensus       374 ~~nt~~~v~ca~fSd-------------dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~  440 (707)
T KOG0263|consen  374 FHNTYQGVTCAEFSD-------------DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS  440 (707)
T ss_pred             EEEcCCcceeEeecC-------------CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC
Confidence            333445677777777             889999999999999996 210                              


Q ss_pred             --eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784          198 --CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV  275 (501)
Q Consensus       198 --~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  275 (501)
                        ..+++.+|.++|....|+    |+.++|++++.|+++|+|.+.+..      ++..+++|..+|..+.|+| .+-+|+
T Consensus       441 ~~~~~~L~GH~GPVyg~sFs----Pd~rfLlScSED~svRLWsl~t~s------~~V~y~GH~~PVwdV~F~P-~GyYFa  509 (707)
T KOG0263|consen  441 SGTSRTLYGHSGPVYGCSFS----PDRRFLLSCSEDSSVRLWSLDTWS------CLVIYKGHLAPVWDVQFAP-RGYYFA  509 (707)
T ss_pred             CceeEEeecCCCceeeeeec----ccccceeeccCCcceeeeecccce------eEEEecCCCcceeeEEecC-CceEEE
Confidence              123466899999999997    899999999999999999999977      5788899999999999998 799999


Q ss_pred             EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC
Q 010784          276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP  355 (501)
Q Consensus       276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~  355 (501)
                      |+|.|++-++|.....++                                            .+.+.+|-..|.|+.|+|
T Consensus       510 tas~D~tArLWs~d~~~P--------------------------------------------lRifaghlsDV~cv~FHP  545 (707)
T KOG0263|consen  510 TASHDQTARLWSTDHNKP--------------------------------------------LRIFAGHLSDVDCVSFHP  545 (707)
T ss_pred             ecCCCceeeeeecccCCc--------------------------------------------hhhhcccccccceEEECC
Confidence            999999999999876543                                            355678999999999999


Q ss_pred             CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCC
Q 010784          356 SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNY  433 (501)
Q Consensus       356 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~  433 (501)
                      +..|+++||.|. +|+||+.++..+      +.|.||.++|++++|+|+ +++++|+.||.|++||+.+++.+..+    
T Consensus       546 Ns~Y~aTGSsD~tVRlWDv~~G~~V------RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l----  615 (707)
T KOG0263|consen  546 NSNYVATGSSDRTVRLWDVSTGNSV------RIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL----  615 (707)
T ss_pred             cccccccCCCCceEEEEEcCCCcEE------EEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh----
Confidence            999999999999 999999998765      899999999999999999 99999999999999999999999999    


Q ss_pred             CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784          434 PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       434 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                       .+|.+.|.++.||.||..||+||  .|..|++||+......
T Consensus       616 -~~Ht~ti~SlsFS~dg~vLasgg--~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  616 -KGHTGTIYSLSFSRDGNVLASGG--ADNSVRLWDLTKVIEL  654 (707)
T ss_pred             -hcccCceeEEEEecCCCEEEecC--CCCeEEEEEchhhccc
Confidence             67788999999999999999999  6699999998765544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.9e-36  Score=237.45  Aligned_cols=279  Identities=17%  Similarity=0.180  Sum_probs=240.4

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      .+..++.+|..+.++.+|+|.++++.|+++++|+...+ .+++++.+|...|..++.+.             |+..|++|
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-~liktYsghG~EVlD~~~s~-------------Dnskf~s~   77 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-ALIKTYSGHGHEVLDAALSS-------------DNSKFASC   77 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-ceeeeecCCCceeeeccccc-------------cccccccC
Confidence            34567778999999999999999999999999999986 99999999999999999988             88999999


Q ss_pred             eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784          185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      +.|..|.+||  +|+.++.+.+|.+.|+.++|.    .+...+++|+.|.++++||-++...    .+++.+......|.
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN----eesSVv~SgsfD~s~r~wDCRS~s~----ePiQildea~D~V~  149 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN----EESSVVASGSFDSSVRLWDCRSRSF----EPIQILDEAKDGVS  149 (307)
T ss_pred             CCCceEEEEEcccCeeeeecccccceeeEEEec----CcceEEEeccccceeEEEEcccCCC----CccchhhhhcCcee
Confidence            9999999999  999999999999999999995    8889999999999999999988653    47888888888999


Q ss_pred             EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784          263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA  342 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  342 (501)
                      ++.+.   +..+++|+.||+++.||++.++...                                              .
T Consensus       150 Si~v~---~heIvaGS~DGtvRtydiR~G~l~s----------------------------------------------D  180 (307)
T KOG0316|consen  150 SIDVA---EHEIVAGSVDGTVRTYDIRKGTLSS----------------------------------------------D  180 (307)
T ss_pred             EEEec---ccEEEeeccCCcEEEEEeecceeeh----------------------------------------------h
Confidence            99885   4589999999999999999885311                                              1


Q ss_pred             cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE--EecCC-eEEEEecCCCcEEEE
Q 010784          343 ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL--HMDPY-KIVTGGRDDLRINIW  418 (501)
Q Consensus       343 ~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l--~~~~~-~~l~~gs~dg~i~iw  418 (501)
                      -...+|+++.|+++++..++++-|. +++.|-.+++.+      ..+++|.+.-+.+  +++.. ..+++||.||.|.+|
T Consensus       181 y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL------~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w  254 (307)
T KOG0316|consen  181 YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL------KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW  254 (307)
T ss_pred             hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH------HHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence            1367899999999999999999888 999999998766      8899998765544  45555 899999999999999


Q ss_pred             eCCCcccccccccCCCCCCCcc-eeeeEeeccccEEEEeecCCCceEEEee
Q 010784          419 ETDTGMLANSLLCNYPEEADIS-TGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      |+.....+..+.     .+... +..+.++|.-..++++..   +.+.+|-
T Consensus       255 dLvd~~~~sk~~-----~~~~v~v~dl~~hp~~~~f~~A~~---~~~~~~~  297 (307)
T KOG0316|consen  255 DLVDETQISKLS-----VVSTVIVTDLSCHPTMDDFITATG---HGDLFWY  297 (307)
T ss_pred             Eeccceeeeeec-----cCCceeEEeeecccCccceeEecC---Cceecee
Confidence            999999998884     33444 889999998877777652   4555554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-36  Score=279.40  Aligned_cols=335  Identities=15%  Similarity=0.188  Sum_probs=266.0

Q ss_pred             EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      |......+..++|+|...++.++-..|.|++||.+=+ .++..|.+|.++|..++|+|             ++.+|+||+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~-------------~qplFVSGG   70 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHP-------------TQPLFVSGG   70 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhh-hHHhhhhccCCccceeeecC-------------CCCeEEecC
Confidence            3344455889999999999999999999999999874 88899999999999999999             889999999


Q ss_pred             CCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          186 CDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       186 ~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      .|..|+||+  +.+|+.++.+|-.-|..+.|+    +.-.+++|+|.|.+|+||+..++.      ++..+.+|+..|.|
T Consensus        71 DDykIkVWnYk~rrclftL~GHlDYVRt~~FH----heyPWIlSASDDQTIrIWNwqsr~------~iavltGHnHYVMc  140 (1202)
T KOG0292|consen   71 DDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFH----HEYPWILSASDDQTIRIWNWQSRK------CIAVLTGHNHYVMC  140 (1202)
T ss_pred             CccEEEEEecccceehhhhccccceeEEeecc----CCCceEEEccCCCeEEEEeccCCc------eEEEEecCceEEEe
Confidence            999999999  889999999999999999998    788899999999999999999987      69999999999999


Q ss_pred             EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784          264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  343 (501)
                      ..|+| ....++++|-|.+|+|||+..-+......       .+..-.+....        ...-++-....-..+.+.+
T Consensus       141 AqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~p-------g~~e~~~~~~~--------~~~dLfg~~DaVVK~VLEG  204 (1202)
T KOG0292|consen  141 AQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAP-------GSLEDQMRGQQ--------GNSDLFGQTDAVVKHVLEG  204 (1202)
T ss_pred             eccCC-ccceEEEecccceEEEEeecchhccCCCC-------CCchhhhhccc--------cchhhcCCcCeeeeeeecc
Confidence            99998 67799999999999999997543211100       00000000000        0000010001112356789


Q ss_pred             CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784          344 CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       344 ~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~  421 (501)
                      |...|+-++|+|.-.++++|++|+ |++|.+...+.    =.+.+..+|.+.|.++-|+|. .++.+.|.|++|+|||+.
T Consensus       205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa----WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA----WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             cccccceEEecCCcceEEecCCcceeeEEEeccccc----eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence            999999999999999999999999 99999987552    345788999999999999999 888888999999999999


Q ss_pred             CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcccee-ecC-----CCCceeeecccC
Q 010784          422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL-KHE-----VQNDSKFWGPQC  492 (501)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~-s~~-----~d~~~~~w~~~~  492 (501)
                      ..+.+++|.     ........++-+|..+++++|   +|+-+.||.++......+ .++     .|..++.+++..
T Consensus       281 kRt~v~tfr-----rendRFW~laahP~lNLfAAg---HDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t  349 (1202)
T KOG0292|consen  281 KRTSVQTFR-----RENDRFWILAAHPELNLFAAG---HDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRT  349 (1202)
T ss_pred             cccceeeee-----ccCCeEEEEEecCCcceeeee---cCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccc
Confidence            999999994     346778999999999999888   456666777664333222 111     255556665554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.4e-37  Score=261.61  Aligned_cols=263  Identities=17%  Similarity=0.265  Sum_probs=225.9

Q ss_pred             CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee
Q 010784          152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG  229 (501)
Q Consensus       152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~  229 (501)
                      -+.+|..+.|.|             +|+.|++|+..|.+.+|+  .-.....++.|..+|+++.|+    .++.+++||+
T Consensus        95 vkc~V~~v~WtP-------------eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws----~~g~wmiSgD  157 (464)
T KOG0284|consen   95 VKCPVNVVRWTP-------------EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWS----HNGTWMISGD  157 (464)
T ss_pred             cccceeeEEEcC-------------CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEc----cCCCEEEEcC
Confidence            456799999999             899999999999999999  222334457899999999998    8999999999


Q ss_pred             CCCcEEEEeccCCCccccccceeeccCCC-CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC
Q 010784          230 EDATVRLWSLSSSGKRGQQALKATLYGHE-KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV  308 (501)
Q Consensus       230 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  308 (501)
                      .+|.|++|+.+...       +..+..|. ..|++++|+| +...|++++.||+|+|||....+..              
T Consensus       158 ~gG~iKyWqpnmnn-------Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee--------------  215 (464)
T KOG0284|consen  158 KGGMIKYWQPNMNN-------VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEE--------------  215 (464)
T ss_pred             CCceEEecccchhh-------hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchh--------------
Confidence            99999999998764       45555554 8999999999 6678999999999999998876432              


Q ss_pred             ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc
Q 010784          309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE  387 (501)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~  387 (501)
                                                    ..+.+|.-.|.+++|+|...++++|+.|+ |++||.+++.++      .+
T Consensus       216 ------------------------------~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl------~t  259 (464)
T KOG0284|consen  216 ------------------------------RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL------AT  259 (464)
T ss_pred             ------------------------------heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh------hh
Confidence                                          34578999999999999999999999999 999999998776      99


Q ss_pred             ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc-cEEEEeecCCCceEE
Q 010784          388 LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQ  465 (501)
Q Consensus       388 ~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~  465 (501)
                      +.+|...|..+.|+|+ .+|+++|.|..++++|+++.+.++++     .+|...++++.|+|-. .+|++|+  .||.|.
T Consensus       260 lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~-----r~Hkkdv~~~~WhP~~~~lftsgg--~Dgsvv  332 (464)
T KOG0284|consen  260 LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY-----RGHKKDVTSLTWHPLNESLFTSGG--SDGSVV  332 (464)
T ss_pred             hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-----hcchhhheeeccccccccceeecc--CCCceE
Confidence            9999999999999999 99999999999999999999999999     6788899999999965 5667777  458888


Q ss_pred             Eeecc----------------------CCccceeecCCCCceeeecccCCCCC
Q 010784          466 FRDFS----------------------NATCPVLKHEVQNDSKFWGPQCYSDT  496 (501)
Q Consensus       466 ~w~~~----------------------~~~~~~~s~~~d~~~~~w~~~~~~~~  496 (501)
                      .|.+.                      +-+..+++|+.|.++++|.-.-..|.
T Consensus       333 h~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d~  385 (464)
T KOG0284|consen  333 HWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGDK  385 (464)
T ss_pred             EEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCCCc
Confidence            88755                      23345679999999999987655553

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-36  Score=244.41  Aligned_cols=289  Identities=16%  Similarity=0.238  Sum_probs=253.7

Q ss_pred             eEEEecCCCCceEEee---CCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          104 VCFYSVAKPHDHILLD---NNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~---~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      ..+..|..||-.++|+   |+|-+|++++.|+.--+-+-++| .-+-++.||++.|++..+..             +...
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-dwigtfeghkgavw~~~l~~-------------na~~   73 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-DWIGTFEGHKGAVWSATLNK-------------NATR   73 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC-CcEEeeeccCcceeeeecCc-------------hhhh
Confidence            4567788899999998   79999999999999888888885 88999999999999999987             6778


Q ss_pred             EEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784          181 LVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE  258 (501)
Q Consensus       181 l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  258 (501)
                      -++++.|-+-+|||  +|..+..|. |..-|.+++|+    .+.++|++|+.+..+||||++..+.     +...+.+|+
T Consensus        74 aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~----~ds~~lltgg~ekllrvfdln~p~A-----pp~E~~ght  143 (334)
T KOG0278|consen   74 AASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFS----QDSNYLLTGGQEKLLRVFDLNRPKA-----PPKEISGHT  143 (334)
T ss_pred             hhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEec----ccchhhhccchHHHhhhhhccCCCC-----CchhhcCCC
Confidence            89999999999999  898998886 89999999997    8999999999999999999998876     678889999


Q ss_pred             CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784          259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV  338 (501)
Q Consensus       259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  338 (501)
                      +.|..+.|.. ..+.+++++.|++|++||.++++.+..+                                         
T Consensus       144 g~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL-----------------------------------------  181 (334)
T KOG0278|consen  144 GGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSL-----------------------------------------  181 (334)
T ss_pred             CcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEE-----------------------------------------
Confidence            9999999996 6677888899999999999998654332                                         


Q ss_pred             eeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784          339 MTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i  417 (501)
                         . ...+|+++.++++|++|.++...+|.+||..+...+      ..++- ...|.+...+|+ .++++|+.|..++.
T Consensus       182 ---~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~l------Ks~k~-P~nV~SASL~P~k~~fVaGged~~~~k  250 (334)
T KOG0278|consen  182 ---E-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLL------KSYKM-PCNVESASLHPKKEFFVAGGEDFKVYK  250 (334)
T ss_pred             ---e-cCCCCcceeeccCCCEEEEecCceeEEeccccccce------eeccC-ccccccccccCCCceEEecCcceEEEE
Confidence               2 367889999999999998887777999999986554      55443 456889999999 88888899999999


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      ||..+++.+..+.    .+|.++|.++.|+|||...++||  +||+|++|....++..
T Consensus       251 fDy~TgeEi~~~n----kgh~gpVhcVrFSPdGE~yAsGS--EDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  251 FDYNTGEEIGSYN----KGHFGPVHCVRFSPDGELYASGS--EDGTIRLWQTTPGKTY  302 (334)
T ss_pred             EeccCCceeeecc----cCCCCceEEEEECCCCceeeccC--CCceEEEEEecCCCch
Confidence            9999999988863    68899999999999999999999  7899999998887764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.5e-34  Score=263.87  Aligned_cols=281  Identities=22%  Similarity=0.374  Sum_probs=242.9

Q ss_pred             EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      +..|..+|+++++++++.++++|+.++.+.+|+..++ +....+.+|...+..+.|+|             +++++++++
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~   70 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-ELLRTLKGHTGPVRDVAASA-------------DGTYLASGS   70 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC-CcEEEEecCCcceeEEEECC-------------CCCEEEEEc
Confidence            3467788999999999999999999999999999874 67788889999999999999             778999999


Q ss_pred             CCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          186 CDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       186 ~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      .||.|++||  .++.+..+..|...|.++.|+    +++.++++++.||.|++||+.+++      ....+..|...|.+
T Consensus        71 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~i~~  140 (289)
T cd00200          71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFS----PDGRILSSSSRDKTIKVWDVETGK------CLTTLRGHTDWVNS  140 (289)
T ss_pred             CCCeEEEEEcCcccceEEEeccCCcEEEEEEc----CCCCEEEEecCCCeEEEEECCCcE------EEEEeccCCCcEEE
Confidence            999999999  446778888899999999997    667888888889999999998765      46667789999999


Q ss_pred             EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784          264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  343 (501)
                      +.++| ++.++++++.|+.|++||+++++.                                            +..+..
T Consensus       141 ~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~--------------------------------------------~~~~~~  175 (289)
T cd00200         141 VAFSP-DGTFVASSSQDGTIKLWDLRTGKC--------------------------------------------VATLTG  175 (289)
T ss_pred             EEEcC-cCCEEEEEcCCCcEEEEEcccccc--------------------------------------------ceeEec
Confidence            99997 577888888799999999986532                                            223445


Q ss_pred             CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784          344 CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       344 ~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~  421 (501)
                      |...+.++.|+|+++.+++++.++ |++||++.++..      ..+..|...+.+++|+|+ .++++++.||.|++||+.
T Consensus       176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~  249 (289)
T cd00200         176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL------GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR  249 (289)
T ss_pred             CccccceEEECCCcCEEEEecCCCcEEEEECCCCcee------cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence            777899999999998888888777 999999986544      667678889999999998 888888779999999999


Q ss_pred             CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      +++.+..+     ..|...+.+++|++++++|++++  .+|.|++|+
T Consensus       250 ~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iw~  289 (289)
T cd00200         250 TGECVQTL-----SGHTNSVTSLAWSPDGKRLASGS--ADGTIRIWD  289 (289)
T ss_pred             CceeEEEc-----cccCCcEEEEEECCCCCEEEEec--CCCeEEecC
Confidence            98888888     45677899999999999999999  669999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.4e-34  Score=294.24  Aligned_cols=292  Identities=16%  Similarity=0.205  Sum_probs=234.4

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-------ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-------YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      +...|.+++|+++|.++|+|+.|+.|+||+.....       .....+. +...|.+++|++.            ++.+|
T Consensus       482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~------------~~~~l  548 (793)
T PLN00181        482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSY------------IKSQV  548 (793)
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccC------------CCCEE
Confidence            55569999999999999999999999999975310       1122233 3467999999873            57899


Q ss_pred             EEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          182 VTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       182 ~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      ++++.||+|++||  +++.+..+.+|.+.|++++|+   ..++.+|++|+.||.|++||+.++.      .+..+..+ .
T Consensus       549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~---p~~~~~L~Sgs~Dg~v~iWd~~~~~------~~~~~~~~-~  618 (793)
T PLN00181        549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYS---SADPTLLASGSDDGSVKLWSINQGV------SIGTIKTK-A  618 (793)
T ss_pred             EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEc---CCCCCEEEEEcCCCEEEEEECCCCc------EEEEEecC-C
Confidence            9999999999999  677888899999999999997   2478899999999999999998875      35555544 5


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      .|.++.|.+.++.+|++|+.||.|++||+++.+.                                           .+.
T Consensus       619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-------------------------------------------~~~  655 (793)
T PLN00181        619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-------------------------------------------PLC  655 (793)
T ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-------------------------------------------cce
Confidence            7899999766789999999999999999986531                                           123


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i  417 (501)
                      .+.+|...|.++.|. ++.++++++.|+ |++||++.........++..+.+|...+++++|+|+ .++++|+.|+.|++
T Consensus       656 ~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~i  734 (793)
T PLN00181        656 TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFV  734 (793)
T ss_pred             EecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEE
Confidence            455788999999997 678899999888 999999864321113456889999999999999999 99999999999999


Q ss_pred             EeCCCcccccccccC--------CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          418 WETDTGMLANSLLCN--------YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       418 wd~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      |+......+..+...        ....+...|.+++|+|++..|++|+  .+|.|++|++
T Consensus       735 w~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~--~dG~I~i~~~  792 (793)
T PLN00181        735 YHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN--STGNIKILEM  792 (793)
T ss_pred             EECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec--CCCcEEEEec
Confidence            998766544332211        0123456799999999999999999  6699999985

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5e-34  Score=231.99  Aligned_cols=270  Identities=21%  Similarity=0.304  Sum_probs=224.7

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCC-----ceeeec-cCCCCceEEEEeeec
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKG-----SCQRCF-KGHNGPVSTLSDKLL  217 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-----~~~~~~-~~h~~~v~~l~~s~~  217 (501)
                      ..++.+++|++.|..++|+|.            .|..|+||+.|+.|++|++.     .+...+ .+|+..|++++|+  
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~------------~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws--   70 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPG------------KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS--   70 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccC------------CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec--
Confidence            345678999999999999992            26799999999999999933     233333 3799999999998  


Q ss_pred             CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784          218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  297 (501)
                        |.|++|++|+.|.++.||.-..++    ..++..+.+|...|.+++|++ ++++|++++.|+.|-+|.+.....    
T Consensus        71 --p~g~~La~aSFD~t~~Iw~k~~~e----fecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE----  139 (312)
T KOG0645|consen   71 --PHGRYLASASFDATVVIWKKEDGE----FECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE----  139 (312)
T ss_pred             --CCCcEEEEeeccceEEEeecCCCc----eeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc----
Confidence              899999999999999999877554    457899999999999999997 899999999999999999885421    


Q ss_pred             ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCC
Q 010784          298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRS  376 (501)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~  376 (501)
                                                           .+....++.|...|..+.|+|...+|++++.|+ |++|+-...
T Consensus       140 -------------------------------------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d  182 (312)
T KOG0645|consen  140 -------------------------------------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD  182 (312)
T ss_pred             -------------------------------------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC
Confidence                                                 234567888999999999999999999999888 999987742


Q ss_pred             CCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784          377 QDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT  455 (501)
Q Consensus       377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  455 (501)
                      ..   ..+++++.+|.+.|.+++|++. .-+++++.|++|+||-..+     .+.    ..|+..+..+.|.  ...|++
T Consensus       183 dd---W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~----~~~sr~~Y~v~W~--~~~IaS  248 (312)
T KOG0645|consen  183 DD---WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLS----GMHSRALYDVPWD--NGVIAS  248 (312)
T ss_pred             CC---eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccc----hhcccceEeeeec--ccceEe
Confidence            21   5667999999999999999998 7788889999999998652     221    3456788999998  568999


Q ss_pred             eecCCCceEEEeecc----------------------------C-CccceeecCCCCceeeeccc
Q 010784          456 ASYGEPGLLQFRDFS----------------------------N-ATCPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       456 ~~~d~~g~i~~w~~~----------------------------~-~~~~~~s~~~d~~~~~w~~~  491 (501)
                      ++  +|+.|+++.-+                            + ...++++++.||.+++|.+.
T Consensus       249 ~g--gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  249 GG--GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             cc--CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            99  66999998622                            2 25678899999999999874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-34  Score=239.07  Aligned_cols=279  Identities=19%  Similarity=0.268  Sum_probs=233.7

Q ss_pred             EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      ...|+..|+.+.|+|+|.++|+|+.|..|.+|+.....+-..++++|++.|..+.|.+             |++.+++++
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-------------d~s~i~S~g  109 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-------------DGSHILSCG  109 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-------------CCCEEEEec
Confidence            4557777999999999999999999999999997655566778899999999999999             899999999


Q ss_pred             CCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          186 CDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       186 ~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      .|.+|+.||  +|++++.+++|..-|+++.-+   .....++.+|+.||++++||+++.+.      ++++. ...++++
T Consensus       110 tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~---rrg~~lv~SgsdD~t~kl~D~R~k~~------~~t~~-~kyqltA  179 (338)
T KOG0265|consen  110 TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPS---RRGPQLVCSGSDDGTLKLWDIRKKEA------IKTFE-NKYQLTA  179 (338)
T ss_pred             CCceEEEEecccceeeehhccccceeeecCcc---ccCCeEEEecCCCceEEEEeecccch------hhccc-cceeEEE
Confidence            999999999  999999999999999998743   34456788999999999999998763      55553 4567899


Q ss_pred             EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCC----c
Q 010784          264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTM----Q  336 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~----~  336 (501)
                      +.|.. .+..+.+|+-|+.|++||++.........     .+...+..+...+.+.++.+.   ..+++||++-.    +
T Consensus       180 v~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~ls-----Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R  253 (338)
T KOG0265|consen  180 VGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLS-----GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR  253 (338)
T ss_pred             EEecc-cccceeeccccCceeeeccccCcceEEee-----cccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence            99985 77889999999999999998875433221     556677778777777776654   48999999753    4


Q ss_pred             eEeeeccCC----CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec
Q 010784          337 KVMTPAICK----PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR  410 (501)
Q Consensus       337 ~~~~~~~~~----~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs  410 (501)
                      ++..+.+|.    .....++|+|+++.+.+|+.|+ +++||......      +..+.||.+.|++++|+|. .++.+++
T Consensus       254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~------lyklpGh~gsvn~~~Fhp~e~iils~~  327 (338)
T KOG0265|consen  254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI------LYKLPGHYGSVNEVDFHPTEPIILSCS  327 (338)
T ss_pred             eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE------EEEcCCcceeEEEeeecCCCcEEEEec
Confidence            466777653    3456889999999999999999 99999988554      4899999999999999999 9999999


Q ss_pred             CCCcEEEEe
Q 010784          411 DDLRINIWE  419 (501)
Q Consensus       411 ~dg~i~iwd  419 (501)
                      .|.+|++=+
T Consensus       328 sdk~i~lge  336 (338)
T KOG0265|consen  328 SDKTIYLGE  336 (338)
T ss_pred             cCceeEeec
Confidence            999998743

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.2e-35  Score=258.41  Aligned_cols=287  Identities=15%  Similarity=0.248  Sum_probs=245.2

Q ss_pred             eEEEecCCCCceEEeeC-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784          104 VCFYSVAKPHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV  182 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (501)
                      ..+..|.+.|+++.|.| .+.++++|+.|+.|+||++-...++++++.||..+|.+++|+.             +|..|+
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-------------~g~~fL  274 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-------------CGTSFL  274 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-------------cCCeee
Confidence            45666888899999999 8999999999999999999887799999999999999999999             899999


Q ss_pred             EeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          183 TSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       183 s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      |++.|+.|++||  +|+++..+. ....++|+.|+    |++ +.+++|+.|+.|+.||+++++      .++.+..|-+
T Consensus       275 S~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~----pd~~n~fl~G~sd~ki~~wDiRs~k------vvqeYd~hLg  343 (503)
T KOG0282|consen  275 SASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFH----PDNQNIFLVGGSDKKIRQWDIRSGK------VVQEYDRHLG  343 (503)
T ss_pred             eeecceeeeeeccccceEEEEEe-cCCCceeeecC----CCCCcEEEEecCCCcEEEEeccchH------HHHHHHhhhh
Confidence            999999999999  888888886 45678899997    455 899999999999999999987      5888999999


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      .|..+.|.+ ++.++++.+.|+++++|+.+.+-.+...                                          
T Consensus       344 ~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i------------------------------------------  380 (503)
T KOG0282|consen  344 AILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNI------------------------------------------  380 (503)
T ss_pred             heeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhh------------------------------------------
Confidence            999999997 8889999999999999999876432211                                          


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCccc--CeEEEEecCC-eEEEEecCCCcE
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVG--SVTQLHMDPY-KIVTGGRDDLRI  415 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~-~~l~~gs~dg~i  415 (501)
                       ...+.....++..+|++.++++-+.|+ |.++.+...-.   ......+++|..  .-..+.|||+ .+|++|+.||.+
T Consensus       381 -~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r---~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v  456 (503)
T KOG0282|consen  381 -ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR---LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKV  456 (503)
T ss_pred             -cchhhccCcceecCCCCCeehhhccCceEEEEecccccc---cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccE
Confidence             111233456888999999999999888 99999765432   233467788854  4556789999 999999999999


Q ss_pred             EEEeCCCcccccccccCCCCCCCcceeeeEeeccc-cEEEEeecCCCceEEEee
Q 010784          416 NIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       416 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~~w~  468 (501)
                      .+||.++-+++..+     ..|...+..+.|+|.. ..+|+++.|  |.|++|+
T Consensus       457 ~~wdwkt~kl~~~l-----kah~~~ci~v~wHP~e~Skvat~~w~--G~Ikiwd  503 (503)
T KOG0282|consen  457 NFWDWKTTKLVSKL-----KAHDQPCIGVDWHPVEPSKVATCGWD--GLIKIWD  503 (503)
T ss_pred             EEeechhhhhhhcc-----ccCCcceEEEEecCCCcceeEecccC--ceeEecC
Confidence            99999999999999     6678899999999965 578888854  9999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-34  Score=231.29  Aligned_cols=279  Identities=18%  Similarity=0.278  Sum_probs=228.7

Q ss_pred             CceEEeeC---CcEEEeecCC-----eeeEEEEecccccccceec--ccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784          113 HDHILLDN---NDIFSTQGSS-----IQNIKIDNFLSESYYRATL--SDHKARITCMRLFPLHETSLFRSEPQRTENVLV  182 (501)
Q Consensus       113 i~~~~~~~---~~~~~~~g~~-----d~~i~vw~~~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (501)
                      -.++.|+|   +...+|++..     .|.+.|-++..+ +-+..+  -.-.+.+..++|++.            ..+.++
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~-~gi~e~~s~d~~D~LfdV~Wse~------------~e~~~~   77 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDP-KGIQECQSYDTEDGLFDVAWSEN------------HENQVI   77 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCC-CCeEEEEeeecccceeEeeecCC------------CcceEE
Confidence            45677775   3444455543     577888887532 222222  234678999999986            568899


Q ss_pred             EeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          183 TSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       183 s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      +++.||++++||   ...+++.++.|..+|.++.|.   ...+..+++++.|++|++|+...+..      +.++.+|+.
T Consensus        78 ~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn---~~~r~~~ltsSWD~TiKLW~~~r~~S------v~Tf~gh~~  148 (311)
T KOG0277|consen   78 AASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWN---TVRRRIFLTSSWDGTIKLWDPNRPNS------VQTFNGHNS  148 (311)
T ss_pred             EEecCceEEEeccCCCCcchhHHHhhhhheEEeccc---cccceeEEeeccCCceEeecCCCCcc------eEeecCCcc
Confidence            999999999999   456788999999999999997   35677888899999999999998774      889999999


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      .|....|+|..+++++++|.|+.+++||++..-                                           +. .
T Consensus       149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-------------------------------------------k~-~  184 (311)
T KOG0277|consen  149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-------------------------------------------KF-M  184 (311)
T ss_pred             EEEEEecCCCCCCeEEEccCCceEEEEEecCCC-------------------------------------------ce-e
Confidence            999999999999999999999999999988641                                           12 2


Q ss_pred             eeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcE
Q 010784          340 TPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRI  415 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i  415 (501)
                      .+..|...+.++.|+. +.+++++|+.|+ |++||+++-+     .++.++.+|.-.|..++|+|.  .+++++|.|-++
T Consensus       185 ~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~  259 (311)
T KOG0277|consen  185 SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTV  259 (311)
T ss_pred             EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhHhhhccccceE
Confidence            3667889999999997 577899999999 9999999875     458899999999999999999  999999999999


Q ss_pred             EEEeCCCc-ccccccccCCCCCCCcceeeeEeec-cccEEEEeecCCCceEEEeec
Q 010784          416 NIWETDTG-MLANSLLCNYPEEADISTGCSAMAV-SGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       416 ~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      +|||...+ .++.+.     ..|+.-+..+.||+ +..++|+.+.|  +.++||+-
T Consensus       260 riw~~~~~ds~~e~~-----~~HtEFv~g~Dws~~~~~~vAs~gWD--e~l~Vw~p  308 (311)
T KOG0277|consen  260 RIWDPERQDSAIETV-----DHHTEFVCGLDWSLFDPGQVASTGWD--ELLYVWNP  308 (311)
T ss_pred             Eecccccchhhhhhh-----hccceEEeccccccccCceeeecccc--cceeeecc
Confidence            99999854 445555     56778889999997 56789999966  99999973

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-34  Score=245.07  Aligned_cols=283  Identities=17%  Similarity=0.253  Sum_probs=234.9

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc--cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE--SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~--~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      ..|...|--+.|+++|+|+|+++.|.+..+|++...  .++.+++.+|..+|.-+.|||             |.++|+++
T Consensus       221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-------------DdryLlaC  287 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-------------DDRYLLAC  287 (519)
T ss_pred             hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-------------CCCeEEec
Confidence            335556889999999999999999999999987543  456889999999999999999             89999999


Q ss_pred             eCCCceEEec--CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC-CCc
Q 010784          185 SCDHSIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-EKP  260 (501)
Q Consensus       185 ~~dg~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~  260 (501)
                      +.|..+.+||  +|.+...+. +|...+.+.+|.    |||..+++|+.|+.+..||++...       ....++- ...
T Consensus       288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~----pDg~~~V~Gs~dr~i~~wdlDgn~-------~~~W~gvr~~~  356 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWC----PDGFRFVTGSPDRTIIMWDLDGNI-------LGNWEGVRDPK  356 (519)
T ss_pred             CchHheeeccCCcchhhhhcccCcCCCcceeEEc----cCCceeEecCCCCcEEEecCCcch-------hhcccccccce
Confidence            9999999999  777776664 356789999997    899999999999999999998764       3334433 356


Q ss_pred             eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEee
Q 010784          261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMT  340 (501)
Q Consensus       261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  340 (501)
                      |.++++.+ +++.+++.+.|..|++++.++.....                                             
T Consensus       357 v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~---------------------------------------------  390 (519)
T KOG0293|consen  357 VHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRG---------------------------------------------  390 (519)
T ss_pred             eEEEEEcC-CCcEEEEEecccceeeechhhhhhhc---------------------------------------------
Confidence            89999997 78888888999999999988753211                                             


Q ss_pred             eccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccC--eEEEEecCC--eEEEEecCCCcE
Q 010784          341 PAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGS--VTQLHMDPY--KIVTGGRDDLRI  415 (501)
Q Consensus       341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~--~~l~~gs~dg~i  415 (501)
                      +.....+|+++++|.+++++++.-.+. +++||+...+.      +..+.||...  +..-+|...  .++++||.|+.|
T Consensus       391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l------v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv  464 (519)
T KOG0293|consen  391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL------VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV  464 (519)
T ss_pred             cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH------HHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence            112367899999999999999998888 99999996544      4888888654  333345443  999999999999


Q ss_pred             EEEeCCCcccccccccCCCCCCCcceeeeEeeccc-cEEEEeecCCCceEEEeeccCC
Q 010784          416 NIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       416 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      +||+..+|+++.++     .+|...|++++|+|.. .++|+||  +||+|++|.....
T Consensus       465 yIWhr~sgkll~~L-----sGHs~~vNcVswNP~~p~m~ASas--DDgtIRIWg~~~~  515 (519)
T KOG0293|consen  465 YIWHRISGKLLAVL-----SGHSKTVNCVSWNPADPEMFASAS--DDGTIRIWGPSDN  515 (519)
T ss_pred             EEEEccCCceeEee-----cCCcceeeEEecCCCCHHHhhccC--CCCeEEEecCCcc
Confidence            99999999999999     6888999999999965 5778888  7899999987754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-33  Score=224.95  Aligned_cols=250  Identities=20%  Similarity=0.293  Sum_probs=215.7

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      +..+.+..|+++|.++.|+-             +|++.++++.|.+|++||  .+.+++++.+|...|..++.+    .+
T Consensus         8 kr~~~l~~~qgaV~avryN~-------------dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s----~D   70 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNV-------------DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALS----SD   70 (307)
T ss_pred             hhceeecccccceEEEEEcc-------------CCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccc----cc
Confidence            45677889999999999998             899999999999999999  899999999999999999986    78


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      +..+++|+.|..|.+||+.+++      ....+.+|.+.|+.++|+. +...+++|+.|.++++||.++...        
T Consensus        71 nskf~s~GgDk~v~vwDV~TGk------v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~--------  135 (307)
T KOG0316|consen   71 NSKFASCGGDKAVQVWDVNTGK------VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSF--------  135 (307)
T ss_pred             ccccccCCCCceEEEEEcccCe------eeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCC--------
Confidence            8999999999999999999998      5899999999999999995 788999999999999999998632        


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV  380 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  380 (501)
                                                        ++++.+....+.|.++..  .+..|++|+.|+ +|.||++.+... 
T Consensus       136 ----------------------------------ePiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~-  178 (307)
T KOG0316|consen  136 ----------------------------------EPIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLS-  178 (307)
T ss_pred             ----------------------------------CccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceee-
Confidence                                              445556666788999988  566899999888 999999998643 


Q ss_pred             CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC
Q 010784          381 KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG  459 (501)
Q Consensus       381 ~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  459 (501)
                           ...-  ..+|+++.|+++ ....+++.|+++++.|-.+|+++..+.+|...   ..-..++++....++++|+  
T Consensus       179 -----sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~---eykldc~l~qsdthV~sgS--  246 (307)
T KOG0316|consen  179 -----SDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM---EYKLDCCLNQSDTHVFSGS--  246 (307)
T ss_pred             -----hhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc---eeeeeeeecccceeEEecc--
Confidence                 3333  468999999999 77777789999999999999999999655432   2334567888888999999  


Q ss_pred             CCceEEEeeccCCcc
Q 010784          460 EPGLLQFRDFSNATC  474 (501)
Q Consensus       460 ~~g~i~~w~~~~~~~  474 (501)
                      +||.|++||+.....
T Consensus       247 EDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  247 EDGKVYFWDLVDETQ  261 (307)
T ss_pred             CCceEEEEEecccee
Confidence            889999999876554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1e-34  Score=241.87  Aligned_cols=281  Identities=17%  Similarity=0.253  Sum_probs=233.0

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec--------ccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL--------SDHKARITCMRLFPLHETSLFRSEPQRTE  178 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--------~~h~~~V~~~~~~~~~~~~~~~~~~~~~~  178 (501)
                      ++....+.|..|+|||.|+++|+.||.|.||+.-+| ++.+-+        .-|.++|.|+.|+.             |.
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~G-KlrKDLkYQAqd~fMMmd~aVlci~FSR-------------Ds  275 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTG-KLRKDLKYQAQDNFMMMDDAVLCISFSR-------------DS  275 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccc-hhhhhhhhhhhcceeecccceEEEeecc-------------cH
Confidence            344566899999999999999999999999999886 544443        34788999999999             88


Q ss_pred             cEEEEeeCCCceEEec--CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          179 NVLVTSSCDHSIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      ..+++|+.||.|+||.  +|.|++.|. +|+..|+|+.|+    .++..+++++.|.++++.-+.+++      ++..++
T Consensus       276 EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS----rD~SqiLS~sfD~tvRiHGlKSGK------~LKEfr  345 (508)
T KOG0275|consen  276 EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS----RDNSQILSASFDQTVRIHGLKSGK------CLKEFR  345 (508)
T ss_pred             HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEc----cCcchhhcccccceEEEeccccch------hHHHhc
Confidence            9999999999999998  999999986 899999999998    899999999999999999999987      589999


Q ss_pred             CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC-CcEEEEEcCC
Q 010784          256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-SSVVTIDLRT  334 (501)
Q Consensus       256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~  334 (501)
                      +|...|+...|.+ ++..+++++.||+|++|+..+.+++..+........-..+.-+.-++...+++.. +++++.++. 
T Consensus       346 GHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-  423 (508)
T KOG0275|consen  346 GHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-  423 (508)
T ss_pred             CccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-
Confidence            9999999999996 8999999999999999999999776655444322222222223334444444433 477777764 


Q ss_pred             CceEeeecc---CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEe
Q 010784          335 MQKVMTPAI---CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGG  409 (501)
Q Consensus       335 ~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~g  409 (501)
                      ++.++.+..   ..+...+...+|.|.++.+.++|+ ++.|...+++..      .++..|...|..++-+|. +++++-
T Consensus       424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE------~tl~VhEkdvIGl~HHPHqNllAsY  497 (508)
T KOG0275|consen  424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE------RTLPVHEKDVIGLTHHPHQNLLASY  497 (508)
T ss_pred             ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee------eeeecccccccccccCcccchhhhh
Confidence            455555543   245567788999999999999999 999999998876      888899999999999999 999999


Q ss_pred             cCCCcEEEEe
Q 010784          410 RDDLRINIWE  419 (501)
Q Consensus       410 s~dg~i~iwd  419 (501)
                      +.||.+++|.
T Consensus       498 sEDgllKLWk  507 (508)
T KOG0275|consen  498 SEDGLLKLWK  507 (508)
T ss_pred             cccchhhhcC
Confidence            9999999995

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.3e-34  Score=255.85  Aligned_cols=247  Identities=17%  Similarity=0.297  Sum_probs=223.8

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      +..+.+..|++.|.++.|+|             ....++++-.+|.|.|||  +...++.+....-+|++..|.    ..
T Consensus         4 ~~krk~~~rSdRVKsVd~HP-------------tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfi----aR   66 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHP-------------TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFI----AR   66 (794)
T ss_pred             hhhhHhhccCCceeeeecCC-------------CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheee----ec
Confidence            44556777999999999999             789999999999999999  777888998889999999997    78


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      .+.+++|+.|..|+||+.++.++      +..+..|...|++|+.+| ...+++++|.|-.|++||.+.+          
T Consensus        67 knWiv~GsDD~~IrVfnynt~ek------V~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~----------  129 (794)
T KOG0276|consen   67 KNWIVTGSDDMQIRVFNYNTGEK------VKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENE----------  129 (794)
T ss_pred             cceEEEecCCceEEEEeccccee------eEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCc----------
Confidence            89999999999999999999985      999999999999999999 5668999999999999998865          


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                                                       ..+.+++.+|...|.+++|+|. .+.+++++-|+ |++|.+.+... 
T Consensus       130 ---------------------------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~-  175 (794)
T KOG0276|consen  130 ---------------------------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP-  175 (794)
T ss_pred             ---------------------------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC-
Confidence                                             2345789999999999999995 78999999888 99999998654 


Q ss_pred             CCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784          380 VKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA  456 (501)
Q Consensus       380 ~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  456 (501)
                           ..++++|...|+++.+-+.   .++++|+.|.+|+|||.++.++++++     .+|...|..+.|+|.-..|++|
T Consensus       176 -----nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-----eGHt~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  176 -----NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-----EGHTNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             -----ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-----hcccccceEEEecCCCcEEEEe
Confidence                 4999999999999999765   79999999999999999999999999     6888999999999999999999


Q ss_pred             ecCCCceEEEeecc
Q 010784          457 SYGEPGLLQFRDFS  470 (501)
Q Consensus       457 ~~d~~g~i~~w~~~  470 (501)
                      +  +||++++|+-.
T Consensus       246 s--EDGTvriWhs~  257 (794)
T KOG0276|consen  246 S--EDGTVRIWNSK  257 (794)
T ss_pred             c--CCccEEEecCc
Confidence            9  78999999843

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.4e-34  Score=251.90  Aligned_cols=270  Identities=18%  Similarity=0.272  Sum_probs=222.9

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCC
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGD  219 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~  219 (501)
                      .+.++++.||+..|+++.|.|.            .+.+|++++.|+.|+||+   .+.++++|.+|..+|.+++|+    
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~------------~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s----  267 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPK------------KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFN----  267 (503)
T ss_pred             HhheeeccCCccccchhhhccc------------eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcc----
Confidence            5778899999999999999995            689999999999999998   689999999999999999997    


Q ss_pred             CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784          220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                      .+|..++|++.|+.|++||.++|..      ...+. ....++++.|.|++.+.+++|+.|+.|+.||+++++.++    
T Consensus       268 ~~g~~fLS~sfD~~lKlwDtETG~~------~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq----  336 (503)
T KOG0282|consen  268 NCGTSFLSASFDRFLKLWDTETGQV------LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ----  336 (503)
T ss_pred             ccCCeeeeeecceeeeeeccccceE------EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH----
Confidence            8999999999999999999999973      55554 355678999999777999999999999999999986543    


Q ss_pred             ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784          300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD  378 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~  378 (501)
                                                              .+..|-+.|..+.|-++|+.+++.++++ ++||+.+.+-.
T Consensus       337 ----------------------------------------eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~  376 (503)
T KOG0282|consen  337 ----------------------------------------EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP  376 (503)
T ss_pred             ----------------------------------------HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence                                                    3455788999999999999999999999 99999998654


Q ss_pred             CCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc---ccccccccCCCCCCCcceeeeEeeccccEEE
Q 010784          379 AVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG---MLANSLLCNYPEEADISTGCSAMAVSGCRIV  454 (501)
Q Consensus       379 ~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  454 (501)
                      .   +  .....+.-..-++..+|+ .++++-+.|+.|.+|.+...   .....+.+|..   .+--..+.|||||++|+
T Consensus       377 i---k--~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v---aGys~~v~fSpDG~~l~  448 (503)
T KOG0282|consen  377 I---K--NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV---AGYSCQVDFSPDGRTLC  448 (503)
T ss_pred             c---h--hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec---cCceeeEEEcCCCCeEE
Confidence            3   1  112223345678889999 99999899999999997643   23345544332   23345689999999999


Q ss_pred             EeecCCCceEEEeeccCCc----------------------cceeecCCCCceeeec
Q 010784          455 TASYGEPGLLQFRDFSNAT----------------------CPVLKHEVQNDSKFWG  489 (501)
Q Consensus       455 s~~~d~~g~i~~w~~~~~~----------------------~~~~s~~~d~~~~~w~  489 (501)
                      +|.  .+|.+.+||+.+-.                      ..+++++-||.|++|+
T Consensus       449 SGd--sdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  449 SGD--SDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eec--CCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999  66999999965321                      2367889999999995

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.7e-32  Score=260.44  Aligned_cols=270  Identities=24%  Similarity=0.364  Sum_probs=223.8

Q ss_pred             eecccC-CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCC
Q 010784          147 ATLSDH-KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       147 ~~~~~h-~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      ..+.+| ...|.++.|++             +|+.+++++.|+.+++|+  ..+  .++.+.+|...|++++|+    ++
T Consensus       152 ~~~~~~~~~sv~~~~fs~-------------~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs----~d  214 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSP-------------DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFS----PD  214 (456)
T ss_pred             eeecccccCceEEEEEcC-------------CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEEC----CC
Confidence            344444 77899999999             899999999999999998  444  667778999999999998    89


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      +.++++|+.|++|++||+.....     .+.++++|...|++++|+| .++++++|+.|++|++||+++++         
T Consensus       215 ~~~l~s~s~D~tiriwd~~~~~~-----~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~---------  279 (456)
T KOG0266|consen  215 GSYLLSGSDDKTLRIWDLKDDGR-----NLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGE---------  279 (456)
T ss_pred             CcEEEEecCCceEEEeeccCCCe-----EEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCe---------
Confidence            99999999999999999955433     6899999999999999998 55999999999999999998863         


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV  380 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  380 (501)
                                                         .+..+.+|.+.|++++|++++++|++++.|+ |++||+.++... 
T Consensus       280 -----------------------------------~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-  323 (456)
T KOG0266|consen  280 -----------------------------------CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-  323 (456)
T ss_pred             -----------------------------------EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-
Confidence                                               4567788999999999999999999999888 999999998721 


Q ss_pred             CCCCcccccCcccC--eEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          381 KPQPMAELDGHVGS--VTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       381 ~~~~~~~~~~h~~~--v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                         ++..+.++...  +++++|+|+ .++++++.|+.+++||+..+..+..+..+...  ...+.....++.++++++|+
T Consensus       324 ---~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~  398 (456)
T KOG0266|consen  324 ---CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGS  398 (456)
T ss_pred             ---eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc--ceeEecccccCCCCeEEEEe
Confidence               22555555554  999999999 88888889999999999999999999654422  12455556688999999999


Q ss_pred             cCCCceEEEeeccCCc----------------------cceeecC--CCCceeeeccc
Q 010784          458 YGEPGLLQFRDFSNAT----------------------CPVLKHE--VQNDSKFWGPQ  491 (501)
Q Consensus       458 ~d~~g~i~~w~~~~~~----------------------~~~~s~~--~d~~~~~w~~~  491 (501)
                        .|+.|.+|+..++.                      ..+++.+  .|+.+++|..+
T Consensus       399 --~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  399 --EDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             --CCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence              77999999976422                      2344444  67888888754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-32  Score=240.48  Aligned_cols=281  Identities=20%  Similarity=0.285  Sum_probs=236.6

Q ss_pred             CCCceEEeeCCc--EEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          111 KPHDHILLDNND--IFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       111 ~~i~~~~~~~~~--~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      .+|++++|+|..  .+.++++  ..+.+|+..+ ....+++....+.|.++.|..             ||.+|+.|+..|
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~-~~~~k~~srFk~~v~s~~fR~-------------DG~LlaaGD~sG   90 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVT-RSVRKTFSRFKDVVYSVDFRS-------------DGRLLAAGDESG   90 (487)
T ss_pred             CcceeEecCCCCCCceEEecc--cEEEEEecch-hhhhhhHHhhccceeEEEeec-------------CCeEEEccCCcC
Confidence            459999999854  4455554  5788888887 477788888899999999998             899999999999


Q ss_pred             ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784          189 SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       189 ~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                      .|+|+|  +...++.+.+|+.+|..+.|+|   .++..+++|+.|+.+++||+.+..      ....+.+|+..|.+.++
T Consensus        91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~---~d~t~l~s~sDd~v~k~~d~s~a~------v~~~l~~htDYVR~g~~  161 (487)
T KOG0310|consen   91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSP---QDNTMLVSGSDDKVVKYWDLSTAY------VQAELSGHTDYVRCGDI  161 (487)
T ss_pred             cEEEeccccHHHHHHHhhccCceeEEEecc---cCCeEEEecCCCceEEEEEcCCcE------EEEEecCCcceeEeecc
Confidence            999999  3346788999999999999984   677899999999999999999875      35688999999999999


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP  346 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  346 (501)
                      +|.++.+++|||.||.|++||++....                                           .+..+ .|..
T Consensus       162 ~~~~~hivvtGsYDg~vrl~DtR~~~~-------------------------------------------~v~el-nhg~  197 (487)
T KOG0310|consen  162 SPANDHIVVTGSYDGKVRLWDTRSLTS-------------------------------------------RVVEL-NHGC  197 (487)
T ss_pred             ccCCCeEEEecCCCceEEEEEeccCCc-------------------------------------------eeEEe-cCCC
Confidence            998889999999999999999997621                                           11222 3889


Q ss_pred             cEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784          347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML  425 (501)
Q Consensus       347 ~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~  425 (501)
                      +|.++.+-|.|.++++++...+++||+.++...     +..+..|...|+|+.+..+ .-|.+|+-|+.|++||+.+.+.
T Consensus       198 pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql-----l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv  272 (487)
T KOG0310|consen  198 PVESVLALPSGSLIASAGGNSVKVWDLTTGGQL-----LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV  272 (487)
T ss_pred             ceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee-----hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE
Confidence            999999999999999999888999999977543     4555669999999999988 6666667999999999999999


Q ss_pred             ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      +..+.      -.++|.+++.+|+++.++.|.  .+|.+.+-+...++
T Consensus       273 v~s~~------~~~pvLsiavs~dd~t~viGm--snGlv~~rr~~~k~  312 (487)
T KOG0310|consen  273 VHSWK------YPGPVLSIAVSPDDQTVVIGM--SNGLVSIRRREVKK  312 (487)
T ss_pred             EEeee------cccceeeEEecCCCceEEEec--ccceeeeehhhccc
Confidence            99884      367899999999999999999  56888877544433

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.1e-33  Score=236.27  Aligned_cols=307  Identities=15%  Similarity=0.215  Sum_probs=252.3

Q ss_pred             HHHHHHHHHHh-hhccccCCeeeEEEecCCCCceEEeeCCc-EEEeecCCeeeEEEEecccccccceecccCCcceeEEE
Q 010784           83 REAYLARRIAL-LQFKFVDPLDVCFYSVAKPHDHILLDNND-IFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMR  160 (501)
Q Consensus        83 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~  160 (501)
                      ..+|.+..... ..-.+..|....+..|..+|.|++=+|+. ..+++|+.||.|++||+.. ..+..++..|.+.|..|.
T Consensus        38 ~rEy~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~AH~G~V~Gi~  116 (433)
T KOG0268|consen   38 AREYTRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFKAHEGLVRGIC  116 (433)
T ss_pred             HHHHHHHhhhHHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhh-hhhhheeecccCceeeEE
Confidence            35555554433 33445677777888999999999999988 8899999999999999998 588999999999999999


Q ss_pred             eeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEec
Q 010784          161 LFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSL  239 (501)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~  239 (501)
                      +..               ..+++++.|.+|+.|. .+..++++.+ ...+..+.-+    ..++.++|++.+  |.|||.
T Consensus       117 v~~---------------~~~~tvgdDKtvK~wk~~~~p~~tilg-~s~~~gIdh~----~~~~~FaTcGe~--i~IWD~  174 (433)
T KOG0268|consen  117 VTQ---------------TSFFTVGDDKTVKQWKIDGPPLHTILG-KSVYLGIDHH----RKNSVFATCGEQ--IDIWDE  174 (433)
T ss_pred             ecc---------------cceEEecCCcceeeeeccCCcceeeec-cccccccccc----cccccccccCce--eeeccc
Confidence            963               7899999999999998 6666676653 4456666654    567788998864  999999


Q ss_pred             cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784          240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML  319 (501)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (501)
                      ....      ++..+.-....|.++.|+|....+|++|+.|+.|.+||+++.+++....                     
T Consensus       175 ~R~~------Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi---------------------  227 (433)
T KOG0268|consen  175 QRDN------PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI---------------------  227 (433)
T ss_pred             ccCC------ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee---------------------
Confidence            8765      5778877788899999999888899999999999999999987644321                     


Q ss_pred             EEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784          320 YIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL  398 (501)
Q Consensus       320 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  398 (501)
                                         .     ...-+.|+|+|.+-.+++|++|. ++.||++..+     .++....+|...|.++
T Consensus       228 -------------------~-----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-----~p~~v~~dhvsAV~dV  278 (433)
T KOG0268|consen  228 -------------------L-----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-----RPLNVHKDHVSAVMDV  278 (433)
T ss_pred             -------------------e-----eccccceecCccccceeeccccccceehhhhhhc-----ccchhhcccceeEEEe
Confidence                               1     23346799999888899999999 9999999875     4578899999999999


Q ss_pred             EecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          399 HMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      .|+|. +-+++||.|.+|+||.+..+.-...+.    ......|.++.||.|.+++++||  +|+.|++|.-...++
T Consensus       279 dfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh----tkRMq~V~~Vk~S~Dskyi~SGS--dd~nvRlWka~Asek  349 (433)
T KOG0268|consen  279 DFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH----TKRMQHVFCVKYSMDSKYIISGS--DDGNVRLWKAKASEK  349 (433)
T ss_pred             ccCCCcchhccccccceEEEeecCCCcchhhhh----HhhhheeeEEEEeccccEEEecC--CCcceeeeecchhhh
Confidence            99999 888889999999999999887665553    22356799999999999999999  789999998654443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.1e-31  Score=275.80  Aligned_cols=279  Identities=15%  Similarity=0.186  Sum_probs=221.0

Q ss_pred             eeeEEEEecccccccce-----ecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCc--------
Q 010784          131 IQNIKIDNFLSESYYRA-----TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGS--------  197 (501)
Q Consensus       131 d~~i~vw~~~~~~~~~~-----~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~--------  197 (501)
                      +|..++|+.... ....     .+..|.+.|++++|+|             ++++|++|+.|+.|+|||...        
T Consensus       457 ~gl~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~i~fs~-------------dg~~latgg~D~~I~iwd~~~~~~~~~~~  522 (793)
T PLN00181        457 EGLCKYLSFSKL-RVKADLKQGDLLNSSNLVCAIGFDR-------------DGEFFATAGVNKKIKIFECESIIKDGRDI  522 (793)
T ss_pred             hhhhhhhcccce-EEEEeeccccccCCCCcEEEEEECC-------------CCCEEEEEeCCCEEEEEECCccccccccc
Confidence            566777776642 2222     2446999999999999             899999999999999998211        


Q ss_pred             --eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784          198 --CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV  275 (501)
Q Consensus       198 --~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  275 (501)
                        ....+. +...|.+++|++   ..+.+|++++.||+|++||+.++.      .+..+.+|...|++++|+|.++.+|+
T Consensus       523 ~~~~~~~~-~~~~v~~l~~~~---~~~~~las~~~Dg~v~lWd~~~~~------~~~~~~~H~~~V~~l~~~p~~~~~L~  592 (793)
T PLN00181        523 HYPVVELA-SRSKLSGICWNS---YIKSQVASSNFEGVVQVWDVARSQ------LVTEMKEHEKRVWSIDYSSADPTLLA  592 (793)
T ss_pred             ccceEEec-ccCceeeEEecc---CCCCEEEEEeCCCeEEEEECCCCe------EEEEecCCCCCEEEEEEcCCCCCEEE
Confidence              112222 456789999972   457899999999999999998875      47788899999999999976788999


Q ss_pred             EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEc-
Q 010784          276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIM-  354 (501)
Q Consensus       276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~-  354 (501)
                      +|+.||.|++||++++..+                                            ..+. +...+.++.|+ 
T Consensus       593 Sgs~Dg~v~iWd~~~~~~~--------------------------------------------~~~~-~~~~v~~v~~~~  627 (793)
T PLN00181        593 SGSDDGSVKLWSINQGVSI--------------------------------------------GTIK-TKANICCVQFPS  627 (793)
T ss_pred             EEcCCCEEEEEECCCCcEE--------------------------------------------EEEe-cCCCeEEEEEeC
Confidence            9999999999999876432                                            1222 23568889995 


Q ss_pred             CCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCc------cccc
Q 010784          355 PSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTG------MLAN  427 (501)
Q Consensus       355 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~------~~~~  427 (501)
                      +++.++++|+.|+ |++||+++.+.     ++..+.+|...|.++.|.+..++++++.|++|++||+..+      ..+.
T Consensus       628 ~~g~~latgs~dg~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~  702 (793)
T PLN00181        628 ESGRSLAFGSADHKVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLH  702 (793)
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCc-----cceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence            5699999999998 99999987542     2467789999999999986677777889999999999743      4566


Q ss_pred             ccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC----------------------------------Cc
Q 010784          428 SLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN----------------------------------AT  473 (501)
Q Consensus       428 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~----------------------------------~~  473 (501)
                      ++     .+|...+..++|++++.+|++|+  .|+.|++|+...                                  .+
T Consensus       703 ~~-----~gh~~~i~~v~~s~~~~~lasgs--~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~  775 (793)
T PLN00181        703 SF-----MGHTNVKNFVGLSVSDGYIATGS--ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS  775 (793)
T ss_pred             EE-----cCCCCCeeEEEEcCCCCEEEEEe--CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence            66     56788899999999999999999  669999998532                                  22


Q ss_pred             cceeecCCCCceeeecc
Q 010784          474 CPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       474 ~~~~s~~~d~~~~~w~~  490 (501)
                      ..+++++.||.+++|++
T Consensus       776 ~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        776 STLVAANSTGNIKILEM  792 (793)
T ss_pred             CeEEEecCCCcEEEEec
Confidence            34668888999999976

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4e-31  Score=243.48  Aligned_cols=311  Identities=19%  Similarity=0.275  Sum_probs=235.2

Q ss_pred             CCceEEee-CCcEEEeecCCeeeEEEEecccccccceec--ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          112 PHDHILLD-NNDIFSTQGSSIQNIKIDNFLSESYYRATL--SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       112 ~i~~~~~~-~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      .++.+..+ .+|++++. +.-..+.+||+++| +..+.+  ..-+..|+|+.-++             +.-+||.|..||
T Consensus        23 N~~~~~~~~~~Gr~va~-~a~E~vn~WdlRtg-e~~~~l~~~~~k~evt~l~~~~-------------d~l~lAVGYaDG   87 (888)
T KOG0306|consen   23 NINFVVKRSGKGRAVAV-SALEQVNIWDLRTG-EIEKKLILLKKKAEVTCLRSSD-------------DILLLAVGYADG   87 (888)
T ss_pred             ceeEEEeecCCCcEEEE-eccccEeEEeeecc-hhhhhhhhhcccceEEEeeccC-------------CcceEEEEecCc
Confidence            34555555 34666654 33457899999997 222222  23446899999888             788899999999


Q ss_pred             ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784          189 SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       189 ~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                      .|+||+  .+....++.+|...|+++.|.    ..|..|+||+.|+.|.+||+-....      ...+.+|...|+..-|
T Consensus        88 sVqif~~~s~~~~~tfngHK~AVt~l~fd----~~G~rlaSGskDt~IIvwDlV~E~G------l~rL~GHkd~iT~~~F  157 (888)
T KOG0306|consen   88 SVQIFSLESEEILITFNGHKAAVTTLKFD----KIGTRLASGSKDTDIIVWDLVGEEG------LFRLRGHKDSITQALF  157 (888)
T ss_pred             eEEeeccCCCceeeeecccccceEEEEEc----ccCceEeecCCCccEEEEEecccee------eEEeecchHHHhHHhc
Confidence            999999  457788999999999999995    8999999999999999999987653      7889999999999888


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe-CCcEEEE---------------
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS-GSSVVTI---------------  330 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~---------------  330 (501)
                      .. +.+.+++.+.|+.|++||+.+..+.....     .+.+.++.+...++.++.+. ++.+.+|               
T Consensus       158 ~~-~~~~lvS~sKDs~iK~WdL~tqhCf~Thv-----d~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~  231 (888)
T KOG0306|consen  158 LN-GDSFLVSVSKDSMIKFWDLETQHCFETHV-----DHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYI  231 (888)
T ss_pred             cC-CCeEEEEeccCceEEEEecccceeeeEEe-----cccceEEEEEEecceEEEEecCCceEEEEeecccccccccccc
Confidence            84 68899999999999999999875432110     12222222222221111111 1122222               


Q ss_pred             --------------------------------------------------------------------------------
Q 010784          331 --------------------------------------------------------------------------------  330 (501)
Q Consensus       331 --------------------------------------------------------------------------------  330 (501)
                                                                                                      
T Consensus       232 s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i  311 (888)
T KOG0306|consen  232 STKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEI  311 (888)
T ss_pred             eeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------EcCCCce---------EeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784          331 --------------------------------------DLRTMQK---------VMTPAICKPILHSFSIMPSKSLICTG  363 (501)
Q Consensus       331 --------------------------------------d~~~~~~---------~~~~~~~~~~v~~v~~~~~~~~l~~~  363 (501)
                                                            .++....         -..+.+|...|.+++++.+...+++|
T Consensus       312 ~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg  391 (888)
T KOG0306|consen  312 KRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG  391 (888)
T ss_pred             HHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec
Confidence                                                  2221001         13455788889999999999899998


Q ss_pred             cCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784          364 GIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG  442 (501)
Q Consensus       364 ~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  442 (501)
                      +.+.+++|+..+.+++      .++..  +.+.+..|-|. ++++.|...|.+.+||+.+...+.+.     ..|.+.|.
T Consensus       392 a~~SikiWn~~t~kci------RTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti-----~AHdgaIW  458 (888)
T KOG0306|consen  392 AGESIKIWNRDTLKCI------RTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETI-----RAHDGAIW  458 (888)
T ss_pred             CCCcEEEEEccCccee------EEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhh-----hcccccee
Confidence            8888999999997765      77763  47888999999 89999999999999999999988888     57888999


Q ss_pred             eeEeeccccEEEEeecCCCceEEEee
Q 010784          443 CSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       443 ~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      .++.+||++.+++||  .|.+|++||
T Consensus       459 si~~~pD~~g~vT~s--aDktVkfWd  482 (888)
T KOG0306|consen  459 SISLSPDNKGFVTGS--ADKTVKFWD  482 (888)
T ss_pred             eeeecCCCCceEEec--CCcEEEEEe
Confidence            999999999999999  559999998

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.6e-31  Score=240.21  Aligned_cols=263  Identities=26%  Similarity=0.494  Sum_probs=219.9

Q ss_pred             ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCC
Q 010784          146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK  223 (501)
Q Consensus       146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~  223 (501)
                      ..++++|.++|++++|+|             ++++|++++.||.|++|+  .+.....+..|...+..+.|+    ++++
T Consensus         2 ~~~~~~h~~~i~~~~~~~-------------~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~   64 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSP-------------DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS----ADGT   64 (289)
T ss_pred             chHhcccCCCEEEEEEcC-------------CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEEC----CCCC
Confidence            356789999999999999             789999999999999999  555677788899999999997    7788


Q ss_pred             EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce
Q 010784          224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT  303 (501)
Q Consensus       224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~  303 (501)
                      ++++++.||.|++||+.+++      ....+..|...+.++.|++ ++.++++++.|+.|.+||+++++.          
T Consensus        65 ~l~~~~~~~~i~i~~~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~----------  127 (289)
T cd00200          65 YLASGSSDKTIRLWDLETGE------CVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKC----------  127 (289)
T ss_pred             EEEEEcCCCeEEEEEcCccc------ceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEE----------
Confidence            99999999999999999865      3667778998999999997 567888888899999999986532          


Q ss_pred             ecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784          304 SVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKP  382 (501)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~  382 (501)
                                                        ...+..|...+.++.|+|++.++++++.++ |++||+++++..   
T Consensus       128 ----------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~---  170 (289)
T cd00200         128 ----------------------------------LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV---  170 (289)
T ss_pred             ----------------------------------EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc---
Confidence                                              233446788899999999999999999666 999999876544   


Q ss_pred             CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCC
Q 010784          383 QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP  461 (501)
Q Consensus       383 ~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~  461 (501)
                         ..+..|...+.++.|+|+ +.+++++.|+.|++||+.+++.+..+     ..|...+.+++|++++.++++++  .+
T Consensus       171 ---~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~--~~  240 (289)
T cd00200         171 ---ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-----RGHENGVNSVAFSPDGYLLASGS--ED  240 (289)
T ss_pred             ---eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch-----hhcCCceEEEEEcCCCcEEEEEc--CC
Confidence               677788889999999999 56666678999999999998888887     35667899999999988888887  56


Q ss_pred             ceEEEeeccC---------------------CccceeecCCCCceeeec
Q 010784          462 GLLQFRDFSN---------------------ATCPVLKHEVQNDSKFWG  489 (501)
Q Consensus       462 g~i~~w~~~~---------------------~~~~~~s~~~d~~~~~w~  489 (501)
                      |.|++|++..                     .+..+++++.|+.+++|+
T Consensus       241 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999653                     224455677777777774

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-32  Score=219.57  Aligned_cols=295  Identities=14%  Similarity=0.180  Sum_probs=235.6

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      .+..|..|++.|.++.+|.+|.+++.|.+..||-..+| +.+-++.||++.|+|++..-             +...++||
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG-erlGty~GHtGavW~~Did~-------------~s~~liTG   70 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG-ERLGTYDGHTGAVWCCDIDW-------------DSKHLITG   70 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC-ceeeeecCCCceEEEEEecC-------------Ccceeeec
Confidence            35678999999999999999999999999999998775 88899999999999999987             78999999


Q ss_pred             eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-----CCcEEEEeccCCCc-cccccceeeccC
Q 010784          185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-----DATVRLWSLSSSGK-RGQQALKATLYG  256 (501)
Q Consensus       185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-----dg~i~iwd~~~~~~-~~~~~~~~~~~~  256 (501)
                      +.|.++++||  +|+++..++ ...+|..+.|+    .+|++++....     .+.|.++|++.... .....+...+..
T Consensus        71 SAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~----~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t  145 (327)
T KOG0643|consen   71 SADQTAKLWDVETGKQLATWK-TNSPVKRVDFS----FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT  145 (327)
T ss_pred             cccceeEEEEcCCCcEEEEee-cCCeeEEEeec----cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence            9999999999  899998887 57789999997    78888776643     46799999985431 112235667777


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      +...++.+-|.| -+..|++|..||.|..||+++++.                                           
T Consensus       146 ~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~-------------------------------------------  181 (327)
T KOG0643|consen  146 PDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKE-------------------------------------------  181 (327)
T ss_pred             Cccceeeeeecc-cCCEEEEecCCCcEEEEEcccCce-------------------------------------------
Confidence            889999999998 788999999999999999998743                                           


Q ss_pred             eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCC
Q 010784          337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDL  413 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg  413 (501)
                      .+...+.|...|+.++++++..++++++.|. -++||.++.+.+      .++.. ..+|++.+++|.  .++..|+.+-
T Consensus       182 ~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~------Kty~t-e~PvN~aaisP~~d~VilgGGqeA  254 (327)
T KOG0643|consen  182 LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL------KTYTT-ERPVNTAAISPLLDHVILGGGQEA  254 (327)
T ss_pred             eeechhhhccccccccccCCcceEEecccCccceeeeccceeeE------EEeee-cccccceecccccceEEecCCcee
Confidence            2233455888999999999999999999999 999999996554      66654 779999999997  5555544332


Q ss_pred             -cEEEEeCCCccccccc-------ccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          414 -RINIWETDTGMLANSL-------LCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       414 -~i~iwd~~~~~~~~~~-------~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                       .|.-=+.+.|+.-..|       +.+..++|-++|++++|+|+|+..++|+  +||.|++..|..
T Consensus       255 ~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG--EDG~VR~h~Fd~  318 (327)
T KOG0643|consen  255 MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG--EDGYVRLHHFDS  318 (327)
T ss_pred             eeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC--CCceEEEEEecc
Confidence             1222222233221111       2223378999999999999999999999  789999987664

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.4e-31  Score=215.24  Aligned_cols=276  Identities=16%  Similarity=0.215  Sum_probs=229.7

Q ss_pred             eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee--eeccCCCCceEEEEeeecCCCCC
Q 010784          147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ--RCFKGHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~--~~~~~h~~~v~~l~~s~~~~~~~  222 (501)
                      +.+++|.+.|.+++|+-             +|..|++|+.|+++.+|+  ..+..  ...++|.+.|-.++|+|   +..
T Consensus        14 r~~~~~~~~v~Sv~wn~-------------~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~---~~~   77 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC-------------DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDP---KHP   77 (313)
T ss_pred             HHhhhhhhcceEEEEcc-------------cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCC---CCC
Confidence            56789999999999998             899999999999999998  22222  34568999999999984   667


Q ss_pred             CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc
Q 010784          223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM  302 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  302 (501)
                      ..|++++.|.+|++||++.++.      ........+.+ -+.|+| ++.+++.++.|..|.+.|.++.+.....+.   
T Consensus        78 d~~atas~dk~ir~wd~r~~k~------~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~---  146 (313)
T KOG1407|consen   78 DLFATASGDKTIRIWDIRSGKC------TARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQF---  146 (313)
T ss_pred             cceEEecCCceEEEEEeccCcE------EEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcc---
Confidence            7999999999999999999874      66665555555 478998 788999999999999999998865433221   


Q ss_pred             eecCCCceeeecCCCeEEEEeC-CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784          303 TSVPGVPVDMKCHESMLYIASG-SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV  380 (501)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  380 (501)
                       .....-.+...+++..++..| +.|.+......+++..++.|.....+|.|+|+|+++|+|+.|. +.+||+...-+  
T Consensus       147 -~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC--  223 (313)
T KOG1407|consen  147 -KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC--  223 (313)
T ss_pred             -cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh--
Confidence             111222233345566667777 6999999999999999999999999999999999999999999 99999998544  


Q ss_pred             CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC
Q 010784          381 KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG  459 (501)
Q Consensus       381 ~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  459 (501)
                          ++.+..+.-+|..+.|+.+ ++||++|.|..|-|=++++|..+..+.      +.++...++|+|...+||.++.|
T Consensus       224 ----~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~------~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  224 ----ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP------CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             ----heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee------ccCCceeEEecCCCceeeEEecC
Confidence                4888888999999999999 999999999999999999999998884      46788999999999999999876


Q ss_pred             CCc
Q 010784          460 EPG  462 (501)
Q Consensus       460 ~~g  462 (501)
                      .++
T Consensus       294 k~~  296 (313)
T KOG1407|consen  294 KDG  296 (313)
T ss_pred             CCC
Confidence            443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.8e-31  Score=223.41  Aligned_cols=310  Identities=16%  Similarity=0.142  Sum_probs=242.9

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      ..+.+|..|++.|.+++.+|             +.++++||+.|..-.||+  ++.....+.+|+..|+++.|+    .+
T Consensus        55 dS~~tF~~H~~svFavsl~P-------------~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs----hd  117 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHP-------------NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS----HD  117 (399)
T ss_pred             cceeehhhcCCceEEEEeCC-------------CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc----cC
Confidence            44678999999999999999             789999999999999999  778888999999999999997    89


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      |.+|+||+.+|.|+||+..++..      ...+...-..+.-+.|+| .+..|++|+.||.+-+|.+.++.....     
T Consensus       118 gtlLATGdmsG~v~v~~~stg~~------~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv-----  185 (399)
T KOG0296|consen  118 GTLLATGDMSGKVLVFKVSTGGE------QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKV-----  185 (399)
T ss_pred             ceEEEecCCCccEEEEEcccCce------EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeE-----
Confidence            99999999999999999999874      455555566788899998 788999999999999999988532211     


Q ss_pred             ceecCCCceeeecCCCeEEEE---eCCcEEEEEcCCCceEeeeccC-CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIA---SGSSVVTIDLRTMQKVMTPAIC-KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRS  376 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~  376 (501)
                      ...+...+.+-.+.|++..+.   .+++|++|++.+++++..+... .....++.++..+..++.|+.++ +++-+..++
T Consensus       186 ~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg  265 (399)
T KOG0296|consen  186 MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG  265 (399)
T ss_pred             ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc
Confidence            112334444444444443333   3469999999999999887743 44567888888999999999888 888888777


Q ss_pred             CCCCCCC--CcccccCcccCeEEEE---ecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784          377 QDAVKPQ--PMAELDGHVGSVTQLH---MDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG  450 (501)
Q Consensus       377 ~~~~~~~--~~~~~~~h~~~v~~l~---~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  450 (501)
                      +.+.-..  .......+...+.++.   ++.. .++|+|+.||+|.|||+...++...+      .|...|..+.|-+ .
T Consensus       266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c------~he~~V~~l~w~~-t  338 (399)
T KOG0296|consen  266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC------EHEDGVTKLKWLN-T  338 (399)
T ss_pred             eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec------cCCCceEEEEEcC-c
Confidence            6541111  1111123444455554   4555 99999999999999999888777666      4677899999998 7


Q ss_pred             cEEEEeecCCCceEEEeecc---------------------CCccceeecCCCCceeeeccc
Q 010784          451 CRIVTASYGEPGLLQFRDFS---------------------NATCPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       451 ~~l~s~~~d~~g~i~~w~~~---------------------~~~~~~~s~~~d~~~~~w~~~  491 (501)
                      .+|++++  .+|.|+.||.+                     +..++++++|.|++.++|+++
T Consensus       339 ~~l~t~c--~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  339 DYLLTAC--ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             chheeec--cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            8999999  56999999954                     455667899999999999864

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.5e-31  Score=227.47  Aligned_cols=288  Identities=17%  Similarity=0.261  Sum_probs=221.5

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG  229 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~  229 (501)
                      -|.+.|.++...               +..++||++||.+++|| .|+++..+.+|.++|.+++|. ..++....|++++
T Consensus       103 ~hdDWVSsv~~~---------------~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v-~~n~~~~~fvsas  166 (423)
T KOG0313|consen  103 LHDDWVSSVKGA---------------SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWV-IKNSSSCLFVSAS  166 (423)
T ss_pred             cchhhhhhhccc---------------CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEE-ecCCccceEEEec
Confidence            477788887765               48999999999999999 999999999999999999986 3344445799999


Q ss_pred             CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc
Q 010784          230 EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP  309 (501)
Q Consensus       230 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  309 (501)
                      .|.++++|..+.+..  .......-.||...|.+++..+ ++..+++|+.|..|++|+..+... ...+..... .... 
T Consensus       167 ~Dqtl~Lw~~~~~~~--~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~-rrk~-  240 (423)
T KOG0313|consen  167 MDQTLRLWKWNVGEN--KVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEE-DELESSSNR-RRKK-  240 (423)
T ss_pred             CCceEEEEEecCchh--hhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCcc-ccccccchh-hhhh-
Confidence            999999999988764  2223444459999999999986 889999999999999999332211 000000000 0000 


Q ss_pred             eeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc
Q 010784          310 VDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL  388 (501)
Q Consensus       310 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~  388 (501)
                                      .-+-=...++.++.++.+|..+|.++.|++ ...+++++.|. |+.||+.+++..      .++
T Consensus       241 ----------------~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~------~~~  297 (423)
T KOG0313|consen  241 ----------------QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLK------STL  297 (423)
T ss_pred             ----------------hhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccce------eee
Confidence                            000001123456788899999999999987 77889999888 999999998765      555


Q ss_pred             cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc---cccccccCCCCCCCcceeeeEeecccc-EEEEeecCCCce
Q 010784          389 DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM---LANSLLCNYPEEADISTGCSAMAVSGC-RIVTASYGEPGL  463 (501)
Q Consensus       389 ~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~g~  463 (501)
                      .+ ...++++..+|. +++++|+.|..+++||.+++.   ..++|     .+|.+.|.++.|+|... +|++|+  .|++
T Consensus       298 ~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~-----~gH~nwVssvkwsp~~~~~~~S~S--~D~t  369 (423)
T KOG0313|consen  298 TT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL-----IGHKNWVSSVKWSPTNEFQLVSGS--YDNT  369 (423)
T ss_pred             ec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee-----ecchhhhhheecCCCCceEEEEEe--cCCe
Confidence            54 567999999999 999999999999999998863   33455     68899999999999775 567777  5599


Q ss_pred             EEEeeccCCc---------------------cceeecCCCCceeeeccc
Q 010784          464 LQFRDFSNAT---------------------CPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       464 i~~w~~~~~~---------------------~~~~s~~~d~~~~~w~~~  491 (501)
                      +++||++...                     ..+++|+.|.+++++.-.
T Consensus       370 ~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  370 VKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence            9999987544                     357799999999998654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=251.47  Aligned_cols=297  Identities=16%  Similarity=0.147  Sum_probs=213.0

Q ss_pred             ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcC---cccccCCCCc--CcEEE
Q 010784          108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHET---SLFRSEPQRT--ENVLV  182 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~---~~~~~~~~~~--~~~l~  182 (501)
                      .|...|-++.|++||+|||+|+.|+.|+||.+... +.   +.-+.+.-.++.+.-....   |.........  ....-
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~-e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIES-ER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEecc-ch---hcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            56677999999999999999999999999998752 11   1122222222222110000   0000000001  11122


Q ss_pred             EeeCCCceEEec-----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          183 TSSCDHSIRLWW-----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       183 s~~~dg~i~vwd-----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      .+.....+.+-+     ..+++..|.+|.+.|..+.|+     ..++|++++.|.+||+|++....      ++..|. |
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-----Kn~fLLSSSMDKTVRLWh~~~~~------CL~~F~-H  408 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-----KNNFLLSSSMDKTVRLWHPGRKE------CLKVFS-H  408 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccc-----cCCeeEeccccccEEeecCCCcc------eeeEEe-c
Confidence            233333333322     456788899999999999996     67899999999999999999876      577665 9


Q ss_pred             CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784          258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  337 (501)
                      ...|+|++|+|.|.++|++|+-||.|+||++...+.+.                                          
T Consensus       409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~------------------------------------------  446 (712)
T KOG0283|consen  409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD------------------------------------------  446 (712)
T ss_pred             CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe------------------------------------------
Confidence            99999999999999999999999999999998764321                                          


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCC----CCcccccCcccCeEEEEecCC---eEEEEe
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKP----QPMAELDGHVGSVTQLHMDPY---KIVTGG  409 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~----~~~~~~~~h~~~v~~l~~~~~---~~l~~g  409 (501)
                         ...-...|++++|.|||++.+.|+-+| +++|+....+.....    ..-+.. .|. .|+.+.+.|.   ++|++ 
T Consensus       447 ---W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~-~~~-rITG~Q~~p~~~~~vLVT-  520 (712)
T KOG0283|consen  447 ---WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK-QGK-RITGLQFFPGDPDEVLVT-  520 (712)
T ss_pred             ---ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc-cCc-eeeeeEecCCCCCeEEEe-
Confidence               112247799999999999999999888 999999876543100    000111 123 7999999876   58888 


Q ss_pred             cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          410 RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       410 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      +.|..|+|+|.++..++..|.+...   ...-....|+.||++|++++  +|..|++|+.....
T Consensus       521 SnDSrIRI~d~~~~~lv~KfKG~~n---~~SQ~~Asfs~Dgk~IVs~s--eDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  521 SNDSRIRIYDGRDKDLVHKFKGFRN---TSSQISASFSSDGKHIVSAS--EDSWVYIWKNDSFN  579 (712)
T ss_pred             cCCCceEEEeccchhhhhhhccccc---CCcceeeeEccCCCEEEEee--cCceEEEEeCCCCc
Confidence            5999999999999999999975432   23345568999999999999  78999999975443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-31  Score=246.77  Aligned_cols=258  Identities=20%  Similarity=0.298  Sum_probs=222.9

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ..|..|.+||..++|+|.+.++++|+.|..|+||+.++ .+++.++.||-+-|..+.|++             .-..++|
T Consensus        45 ~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL~GHlDYVRt~~FHh-------------eyPWIlS  110 (1202)
T KOG0292|consen   45 DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTLLGHLDYVRTVFFHH-------------EYPWILS  110 (1202)
T ss_pred             hhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhhccccceeEEeeccC-------------CCceEEE
Confidence            45677899999999999999999999999999999998 599999999999999999998             7889999


Q ss_pred             eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc----c-----------
Q 010784          184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR----G-----------  246 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~----~-----------  246 (501)
                      +|.|.+|+|||  +++++..+.||..-|.|..|+    |....++|+|.|.+|||||+..-++.    +           
T Consensus       111 ASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh----ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~  186 (1202)
T KOG0292|consen  111 ASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH----PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG  186 (1202)
T ss_pred             ccCCCeEEEEeccCCceEEEEecCceEEEeeccC----CccceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc
Confidence            99999999999  899999999999999999998    78889999999999999998653220    0           


Q ss_pred             --------cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784          247 --------QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM  318 (501)
Q Consensus       247 --------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (501)
                              .......+.+|...|+-++|+| .-.++++|+.|..|++|.+...+.                         
T Consensus       187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKa-------------------------  240 (1202)
T KOG0292|consen  187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKA-------------------------  240 (1202)
T ss_pred             chhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccc-------------------------
Confidence                    1123456789999999999998 566999999999999999875431                         


Q ss_pred             EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEE
Q 010784          319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQ  397 (501)
Q Consensus       319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  397 (501)
                                 |.      +-+..+|...|.++-|+|..+++++.++|+ |++||+...+.      +++++...+....
T Consensus       241 -----------WE------vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~------v~tfrrendRFW~  297 (1202)
T KOG0292|consen  241 -----------WE------VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS------VQTFRRENDRFWI  297 (1202)
T ss_pred             -----------ee------ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc------eeeeeccCCeEEE
Confidence                       22      235678999999999999999999999999 99999998655      4888877889999


Q ss_pred             EEecCC-eEEEEecCCCcEEEEeCCCccccccc
Q 010784          398 LHMDPY-KIVTGGRDDLRINIWETDTGMLANSL  429 (501)
Q Consensus       398 l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~  429 (501)
                      ++.+|. +++++| .|+-+.||.++..++...+
T Consensus       298 laahP~lNLfAAg-HDsGm~VFkleRErpa~~v  329 (1202)
T KOG0292|consen  298 LAAHPELNLFAAG-HDSGMIVFKLERERPAYAV  329 (1202)
T ss_pred             EEecCCcceeeee-cCCceEEEEEcccCceEEE
Confidence            999999 999997 8888999988755444333

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-31  Score=215.01  Aligned_cols=246  Identities=20%  Similarity=0.285  Sum_probs=212.9

Q ss_pred             EEecCCCCceEEeeCC-cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          106 FYSVAKPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      .+.....+-.++|+++ ...+++++-||.+++||......+++.++.|...|.++.|++.            ++..++++
T Consensus        56 s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~------------~r~~~lts  123 (311)
T KOG0277|consen   56 SYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV------------RRRIFLTS  123 (311)
T ss_pred             eeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc------------cceeEEee
Confidence            3444455778888864 4566788889999999987667899999999999999999985            78889999


Q ss_pred             eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784          185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      +.|++|++|+  .++.+.++.+|...|....|+|   ..++++++++.||.+++||++...+      ...+..|...|.
T Consensus       124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp---~~~nlfas~Sgd~~l~lwdvr~~gk------~~~i~ah~~Eil  194 (311)
T KOG0277|consen  124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSP---HIPNLFASASGDGTLRLWDVRSPGK------FMSIEAHNSEIL  194 (311)
T ss_pred             ccCCceEeecCCCCcceEeecCCccEEEEEecCC---CCCCeEEEccCCceEEEEEecCCCc------eeEEEeccceeE
Confidence            9999999998  7788999999999999999995   6788999999999999999998764      444888999999


Q ss_pred             EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784          263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA  342 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  342 (501)
                      +..|+.-+.++++||+.|+.|+.||++..+                                           .++..+.
T Consensus       195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-------------------------------------------~pl~eL~  231 (311)
T KOG0277|consen  195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLR-------------------------------------------TPLFELN  231 (311)
T ss_pred             eecccccCCcEEEecCCCceEEEEehhhcc-------------------------------------------ccceeec
Confidence            999998889999999999999999999763                                           2345677


Q ss_pred             cCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEE
Q 010784          343 ICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIW  418 (501)
Q Consensus       343 ~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iw  418 (501)
                      +|.-.|..+.|||. ..+|++++.|- +||||.......     +.+...|++-|..+.|++.  ..+|+++.|+.++||
T Consensus       232 gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~-----~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw  306 (311)
T KOG0277|consen  232 GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA-----IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVW  306 (311)
T ss_pred             CCceEEEEEecCcchhhHhhhccccceEEecccccchhh-----hhhhhccceEEeccccccccCceeeecccccceeee
Confidence            89999999999997 67899999998 999999866433     5677789999999999987  788888899999999


Q ss_pred             eC
Q 010784          419 ET  420 (501)
Q Consensus       419 d~  420 (501)
                      +.
T Consensus       307 ~p  308 (311)
T KOG0277|consen  307 NP  308 (311)
T ss_pred             cc
Confidence            84

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-30  Score=215.33  Aligned_cols=270  Identities=20%  Similarity=0.297  Sum_probs=216.7

Q ss_pred             ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCcee-eeccCCCCceEEEEeeecCCCCCCEE
Q 010784          150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQ-RCFKGHNGPVSTLSDKLLGDGSGKIL  225 (501)
Q Consensus       150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~-~~~~~h~~~v~~l~~s~~~~~~~~~l  225 (501)
                      ....+.|.+|+|||.            ...+++.||.||+||+|+   .+..+ +....|.++|.+++|+    .+|..+
T Consensus        24 ~pP~DsIS~l~FSP~------------~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws----ddgskV   87 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQ------------ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS----DDGSKV   87 (347)
T ss_pred             CCcccchheeEeccc------------cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc----cCCceE
Confidence            345688999999994            567888999999999998   33333 4456799999999997    899999


Q ss_pred             EEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784          226 ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       226 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                      ++|+.|+.+++||+.+++       ...+..|.++|..+.|.+.. -..|+|||.|++|+.||.+...+      +....
T Consensus        88 f~g~~Dk~~k~wDL~S~Q-------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p------v~t~~  154 (347)
T KOG0647|consen   88 FSGGCDKQAKLWDLASGQ-------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP------VATLQ  154 (347)
T ss_pred             EeeccCCceEEEEccCCC-------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe------eeeee
Confidence            999999999999999985       67788899999999998632 24899999999999999998744      44457


Q ss_pred             cCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeee--ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784          305 VPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTP--AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV  380 (501)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  380 (501)
                      .+..+++++.-....++++++ .|.+|+++++......  ..-.-.+.+|+..++....+.|+-.+ +.|..+..+... 
T Consensus       155 LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~-  233 (347)
T KOG0647|consen  155 LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK-  233 (347)
T ss_pred             ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc-
Confidence            788899999988888888775 8999999877554322  12345688999999988889898555 888777764211 


Q ss_pred             CCCCcccccCcc---------cCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784          381 KPQPMAELDGHV---------GSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG  450 (501)
Q Consensus       381 ~~~~~~~~~~h~---------~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  450 (501)
                         .-.+|+.|.         ..|++|+|+|. ..|++.+.||+..+||-.....+.+.     ..|..+|++++|+.+|
T Consensus       234 ---~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s-----~~~~qpItcc~fn~~G  305 (347)
T KOG0647|consen  234 ---DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS-----ETHPQPITCCSFNRNG  305 (347)
T ss_pred             ---CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc-----CcCCCccceeEecCCC
Confidence               114455553         36888999999 77777779999999999888888877     5678999999999999


Q ss_pred             cEEEEee
Q 010784          451 CRIVTAS  457 (501)
Q Consensus       451 ~~l~s~~  457 (501)
                      .+++-+.
T Consensus       306 ~ifaYA~  312 (347)
T KOG0647|consen  306 SIFAYAL  312 (347)
T ss_pred             CEEEEEe
Confidence            9998765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=5.4e-31  Score=253.16  Aligned_cols=290  Identities=19%  Similarity=0.239  Sum_probs=238.2

Q ss_pred             CCCCceEEeeCCcEEEeecC--CeeeEEEEecccc-----------cccceecccCCcceeEEEeeccCcCcccccCCCC
Q 010784          110 AKPHDHILLDNNDIFSTQGS--SIQNIKIDNFLSE-----------SYYRATLSDHKARITCMRLFPLHETSLFRSEPQR  176 (501)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~g~--~d~~i~vw~~~~~-----------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~  176 (501)
                      ...|-++.++|+|..+|||+  .|+.+.||+.+.-           .+.+.+...|.+.|+|+.|+|             
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-------------   79 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-------------   79 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-------------
Confidence            33488999999999999999  8999999986531           245666788999999999999             


Q ss_pred             cCcEEEEeeCCCceEEec-CC-------------------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEE
Q 010784          177 TENVLVTSSCDHSIRLWW-KG-------------------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL  236 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd-~~-------------------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~i  236 (501)
                      ||.+||+|+.|+.|.||. ..                   +++..+.+|...|..++|+    |++.+|++++.|++|.+
T Consensus        80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws----p~~~~lvS~s~DnsVii  155 (942)
T KOG0973|consen   80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS----PDDSLLVSVSLDNSVII  155 (942)
T ss_pred             CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC----CCccEEEEecccceEEE
Confidence            899999999999999997 21                   2456788999999999997    89999999999999999


Q ss_pred             EeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC
Q 010784          237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE  316 (501)
Q Consensus       237 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (501)
                      ||..+.+      .+..+++|.+.|..+.|.| -+++|++-+.|++|++|++.+-.......-                 
T Consensus       156 wn~~tF~------~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~-----------------  211 (942)
T KOG0973|consen  156 WNAKTFE------LLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITK-----------------  211 (942)
T ss_pred             Eccccce------eeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeecc-----------------
Confidence            9999985      6999999999999999998 789999999999999999665322111000                 


Q ss_pred             CeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc--C-Cc--EEEEecCCCCCCCCCCCcccccCc
Q 010784          317 SMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG--I-GK--AMTWDIRRSQDAVKPQPMAELDGH  391 (501)
Q Consensus       317 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~-d~--i~iwd~~~~~~~~~~~~~~~~~~h  391 (501)
                                           ...-......+..+.|||||++|++..  . +.  +.|.+-.+.+..      ..+-||
T Consensus       212 ---------------------pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~------~~LvGH  264 (942)
T KOG0973|consen  212 ---------------------PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVD------KDLVGH  264 (942)
T ss_pred             ---------------------chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceee------eeeecC
Confidence                                 000001244578899999999999876  2 22  888888775543      788899


Q ss_pred             ccCeEEEEecCC------e------------EEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE
Q 010784          392 VGSVTQLHMDPY------K------------IVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI  453 (501)
Q Consensus       392 ~~~v~~l~~~~~------~------------~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  453 (501)
                      ..++.++.|+|.      .            ++|+||.|++|.||.....+++....    .-....|..++|+|||-.|
T Consensus       265 ~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~----~lf~~SI~DmsWspdG~~L  340 (942)
T KOG0973|consen  265 SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH----NLFNKSIVDMSWSPDGFSL  340 (942)
T ss_pred             CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh----hhhcCceeeeeEcCCCCeE
Confidence            999999999882      3            88999999999999998888776663    2346789999999999999


Q ss_pred             EEeecCCCceEEEeeccCCc
Q 010784          454 VTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       454 ~s~~~d~~g~i~~w~~~~~~  473 (501)
                      +++|  -||+|.+..|+..+
T Consensus       341 facS--~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  341 FACS--LDGTVALIHFEEKE  358 (942)
T ss_pred             EEEe--cCCeEEEEEcchHH
Confidence            9999  55999999998654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.98  E-value=2.9e-30  Score=209.67  Aligned_cols=271  Identities=15%  Similarity=0.209  Sum_probs=228.3

Q ss_pred             ecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEE
Q 010784          148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKIL  225 (501)
Q Consensus       148 ~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l  225 (501)
                      .++||..+++.+.|+.             +|.+|++++.|.+..||-  +|..+.++.+|++.|.|+...    .+...+
T Consensus         5 ~l~GHERplTqiKyN~-------------eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did----~~s~~l   67 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNR-------------EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDID----WDSKHL   67 (327)
T ss_pred             ccccCccccceEEecC-------------CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEec----CCccee
Confidence            4689999999999999             899999999999999996  899999999999999999984    788999


Q ss_pred             EEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-----CCeEEEEECCCCccccceecc
Q 010784          226 ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-----DSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       226 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-----dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      ++|+.|.++++||+.++++      +..++ ...+|..+.|++ ++++++....     .+.|.++|++....       
T Consensus        68 iTGSAD~t~kLWDv~tGk~------la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~-------  132 (327)
T KOG0643|consen   68 ITGSADQTAKLWDVETGKQ------LATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSS-------  132 (327)
T ss_pred             eeccccceeEEEEcCCCcE------EEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChh-------
Confidence            9999999999999999984      55554 567899999997 6666666543     36788888875431       


Q ss_pred             cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                                                    ++...++...+..+...++.+-|.|-+++|++|.+++ |.+||+++++..
T Consensus       133 ------------------------------~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~  182 (327)
T KOG0643|consen  133 ------------------------------DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL  182 (327)
T ss_pred             ------------------------------hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee
Confidence                                          0112344566677789999999999999999999999 999999998654


Q ss_pred             CCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          380 VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       380 ~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                           +..-+.|...|+.|+++++ .+++++|.|.+-++||+.+.++++++..      ..+|++.+++|-..+++.|+.
T Consensus       183 -----v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t------e~PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  183 -----VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT------ERPVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             -----eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee------cccccceecccccceEEecCC
Confidence                 5666788999999999999 9999999999999999999999999953      567999999998888877765


Q ss_pred             C---------------------------------CCceEEEeeccCCccceeecCCCCceeeeccc
Q 010784          459 G---------------------------------EPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       459 d---------------------------------~~g~i~~w~~~~~~~~~~s~~~d~~~~~w~~~  491 (501)
                      .                                 +=|.|.-..+.+++..++||++||.+|+..++
T Consensus       252 qeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  252 QEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            3                                 23556666788999999999999999998654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.98  E-value=1.3e-31  Score=230.35  Aligned_cols=280  Identities=19%  Similarity=0.280  Sum_probs=228.5

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C-C--ceeeeccCCCCceEEEEeeecCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K-G--SCQRCFKGHNGPVSTLSDKLLGD  219 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~-~--~~~~~~~~h~~~v~~l~~s~~~~  219 (501)
                      .....+..|.+.|..+.|-+             +...|++|+.|..|++|+ . .  ..+.++.+..++|+.+.|    +
T Consensus       166 ~~~~~ld~h~gev~~v~~l~-------------~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~----d  228 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEFLR-------------NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDF----D  228 (459)
T ss_pred             hhhhhhhccccccceeEEcc-------------CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeee----c
Confidence            55667788999999999998             678999999999999999 2 2  356778888999999999    4


Q ss_pred             CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784          220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                      +++..+++++.|+.+++|+++...      ...++.+|+..|+++.|.. ....+++|+.|.+|++||+....+.     
T Consensus       229 ~~~~~~iAas~d~~~r~Wnvd~~r------~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~-----  296 (459)
T KOG0288|consen  229 SDNKHVIAASNDKNLRLWNVDSLR------LRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCS-----  296 (459)
T ss_pred             CCCceEEeecCCCceeeeeccchh------hhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhhee-----
Confidence            889999999999999999999876      5899999999999999985 4445999999999999999986433     


Q ss_pred             ccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784          300 VGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~  375 (501)
                       ....+...+..+.+.  ...+.+|   ..|++||.++..+......+. .|+++..++++..+.+++.|. +.+.|+++
T Consensus       297 -kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt  372 (459)
T KOG0288|consen  297 -KTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRT  372 (459)
T ss_pred             -ccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccc
Confidence             333333333333333  2334444   389999999999999988755 999999999999999889666 99999998


Q ss_pred             CCCCCCCCCcccccC----cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784          376 SQDAVKPQPMAELDG----HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG  450 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~----h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  450 (501)
                      .+..      +.+..    .....+.+.|||+ .++++||.||.|+||++.++++...+....   ....|++++|+|.|
T Consensus       373 ~eI~------~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~---s~~aI~s~~W~~sG  443 (459)
T KOG0288|consen  373 KEIR------QTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST---SNAAITSLSWNPSG  443 (459)
T ss_pred             ccEE------EEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC---CCcceEEEEEcCCC
Confidence            6643      33321    1234889999999 999999999999999999999988885321   22379999999999


Q ss_pred             cEEEEeecCCCceEEEe
Q 010784          451 CRIVTASYGEPGLLQFR  467 (501)
Q Consensus       451 ~~l~s~~~d~~g~i~~w  467 (501)
                      ..|++++  .++.+.+|
T Consensus       444 ~~Llsad--k~~~v~lW  458 (459)
T KOG0288|consen  444 SGLLSAD--KQKAVTLW  458 (459)
T ss_pred             chhhccc--CCcceEec
Confidence            9999998  66999988

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.98  E-value=1.9e-30  Score=229.23  Aligned_cols=294  Identities=15%  Similarity=0.136  Sum_probs=224.4

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc---ccceec-ccCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES---YYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTEN  179 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~---~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~  179 (501)
                      ..+..+.+.|++++++|.|..+++|+.|..|++||+..-.   +..+.+ ......|++++|++             .|+
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-------------Tg~  227 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-------------TGD  227 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-------------CCC
Confidence            4555666779999999999999999999999999987421   122222 23456799999999             788


Q ss_pred             EEEEeeCCCceEEec-CCceee-------------eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc
Q 010784          180 VLVTSSCDHSIRLWW-KGSCQR-------------CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR  245 (501)
Q Consensus       180 ~l~s~~~dg~i~vwd-~~~~~~-------------~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  245 (501)
                      .|++.+..-..+|+| .|..+.             .-++|...++|.+|+|   .+.+.+++++.||++|+||++.....
T Consensus       228 ~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP---~~k~~FlT~s~DgtlRiWdv~~~k~q  304 (641)
T KOG0772|consen  228 QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHP---DNKEEFLTCSYDGTLRIWDVNNTKSQ  304 (641)
T ss_pred             eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecccccc---CcccceEEecCCCcEEEEecCCchhh
Confidence            888888888999998 444332             3468999999999995   55678999999999999999886641


Q ss_pred             ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC
Q 010784          246 GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS  325 (501)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (501)
                      .+........+..-+++..+|++ ++..|++|..||.|.+|+.......                               
T Consensus       305 ~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~-------------------------------  352 (641)
T KOG0772|consen  305 LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVR-------------------------------  352 (641)
T ss_pred             eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccc-------------------------------
Confidence            11111111223445788999998 8889999999999999998543210                               


Q ss_pred             cEEEEEcCCCceEeeeccCCC--cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc--ccCeEEEEe
Q 010784          326 SVVTIDLRTMQKVMTPAICKP--ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH--VGSVTQLHM  400 (501)
Q Consensus       326 ~i~~~d~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~  400 (501)
                                .....-..|..  .|++|.||++|++|++-+.|. +++||+++.+..     +....+-  ..+-+.++|
T Consensus       353 ----------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp-----L~~~tgL~t~~~~tdc~F  417 (641)
T KOG0772|consen  353 ----------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP-----LNVRTGLPTPFPGTDCCF  417 (641)
T ss_pred             ----------cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc-----hhhhcCCCccCCCCcccc
Confidence                      01122345655  899999999999999999888 999999997643     4444332  235678899


Q ss_pred             cCC-eEEEEecC------CCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784          401 DPY-KIVTGGRD------DLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR  467 (501)
Q Consensus       401 ~~~-~~l~~gs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w  467 (501)
                      +|+ +++++|+.      .|.+.+||..+.+.++.+     .-....|..+.|+|.-+.|++|+  .||.++++
T Consensus       418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki-----~i~~aSvv~~~WhpkLNQi~~gs--gdG~~~vy  484 (641)
T KOG0772|consen  418 SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI-----DISTASVVRCLWHPKLNQIFAGS--GDGTAHVY  484 (641)
T ss_pred             CCCceEEEecccccCCCCCceEEEEeccceeeEEEe-----cCCCceEEEEeecchhhheeeec--CCCceEEE
Confidence            999 99998753      578999999999988888     34467888999999999999999  55999876

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.1e-29  Score=209.19  Aligned_cols=282  Identities=18%  Similarity=0.214  Sum_probs=228.8

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC--
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC--  186 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--  186 (501)
                      ....|+++.|+++|.++++.+.|-.+++||..++ +..+++..++-.|..+.|..             ..+.++.++.  
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g-~~~~ti~skkyG~~~~~Fth-------------~~~~~i~sStk~   78 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG-KQVKTINSKKYGVDLACFTH-------------HSNTVIHSSTKE   78 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC-ceeeEeecccccccEEEEec-------------CCceEEEccCCC
Confidence            4567999999999999999999999999999996 88888888888899999987             4566666666  


Q ss_pred             CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          187 DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       187 dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      |.+|+.-+  +.+.++.|.||...|++++.+    |-++.+++++.|++|++||++..+.      ...+.....+|  .
T Consensus        79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~s----P~~d~FlS~S~D~tvrLWDlR~~~c------qg~l~~~~~pi--~  146 (311)
T KOG1446|consen   79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVS----PKDDTFLSSSLDKTVRLWDLRVKKC------QGLLNLSGRPI--A  146 (311)
T ss_pred             CCceEEEEeecCceEEEcCCCCceEEEEEec----CCCCeEEecccCCeEEeeEecCCCC------ceEEecCCCcc--e
Confidence            88999998  889999999999999999997    7779999999999999999997653      44444444443  5


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec-c
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-I  343 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~  343 (501)
                      +|.| .|-++|++.....|++||++.-..-    ...                                    ...+. .
T Consensus       147 AfDp-~GLifA~~~~~~~IkLyD~Rs~dkg----PF~------------------------------------tf~i~~~  185 (311)
T KOG1446|consen  147 AFDP-EGLIFALANGSELIKLYDLRSFDKG----PFT------------------------------------TFSITDN  185 (311)
T ss_pred             eECC-CCcEEEEecCCCeEEEEEecccCCC----Cce------------------------------------eEccCCC
Confidence            8887 7888888888889999999875320    000                                    00011 2


Q ss_pred             CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCe---EEEEecCC-eEEEEecCCCcEEEE
Q 010784          344 CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSV---TQLHMDPY-KIVTGGRDDLRINIW  418 (501)
Q Consensus       344 ~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v---~~l~~~~~-~~l~~gs~dg~i~iw  418 (501)
                      .....+.+.|+|||++++.++..+ +++.|.-.+...      .++.++...-   ...+|.|+ +++.+|+.||+|.+|
T Consensus       186 ~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~------~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw  259 (311)
T KOG1446|consen  186 DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVK------STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVW  259 (311)
T ss_pred             CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEe------eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEE
Confidence            356688999999999999999888 999999998754      6666654332   57789999 999999999999999


Q ss_pred             eCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          419 ETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      ++++|..+..+.+    .+...+.++.|+|...++++++    ..+.+|-...
T Consensus       260 ~~~tg~~v~~~~~----~~~~~~~~~~fnP~~~mf~sa~----s~l~fw~p~~  304 (311)
T KOG1446|consen  260 NLETGKKVAVLRG----PNGGPVSCVRFNPRYAMFVSAS----SNLVFWLPDE  304 (311)
T ss_pred             EcCCCcEeeEecC----CCCCCccccccCCceeeeeecC----ceEEEEeccc
Confidence            9999999999953    2578899999999999999987    5788886553

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.4e-30  Score=214.57  Aligned_cols=288  Identities=19%  Similarity=0.233  Sum_probs=229.4

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccc-----------------ccccceecccCCcceeEEEeeccCc
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS-----------------ESYYRATLSDHKARITCMRLFPLHE  166 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~-----------------~~~~~~~~~~h~~~V~~~~~~~~~~  166 (501)
                      ...-.|..+..+-+|++||.++|+|+.|..|+|.|++.                 ..-.+++|-.|.+.|+++.|+|   
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP---  182 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP---  182 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc---
Confidence            34556778899999999999999999999999999861                 0245788889999999999999   


Q ss_pred             CcccccCCCCcCcEEEEeeCCCceEEec-CCc----eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC
Q 010784          167 TSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS----CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS  241 (501)
Q Consensus       167 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~----~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~  241 (501)
                                ...+|++|+.|++|+++| ...    ..+.|. ...+|.++.|+    |.|.+|+.|..-.++++||+++
T Consensus       183 ----------re~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfH----PsGefllvgTdHp~~rlYdv~T  247 (430)
T KOG0640|consen  183 ----------RETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFH----PSGEFLLVGTDHPTLRLYDVNT  247 (430)
T ss_pred             ----------hhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeec----CCCceEEEecCCCceeEEeccc
Confidence                      789999999999999999 221    122333 46789999998    8999999999999999999998


Q ss_pred             CCcccccccee--eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784          242 SGKRGQQALKA--TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML  319 (501)
Q Consensus       242 ~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (501)
                      -+.     .+.  .-..|++.|+++.+++ .+++.++|+.||.|++||--+++++..+.                     
T Consensus       248 ~Qc-----fvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~---------------------  300 (430)
T KOG0640|consen  248 YQC-----FVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIG---------------------  300 (430)
T ss_pred             eeE-----eeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHH---------------------
Confidence            764     221  2346999999999997 78999999999999999988876654432                     


Q ss_pred             EEEeCCcEEEEEcCCCceEeeeccC-CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-----c
Q 010784          320 YIASGSSVVTIDLRTMQKVMTPAIC-KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-----V  392 (501)
Q Consensus       320 ~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-----~  392 (501)
                                            ..| ...|.+..|..+|+++++.+.|. +++|.+.+++.+      .++.|.     .
T Consensus       301 ----------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l------~~YtGAg~tgrq  352 (430)
T KOG0640|consen  301 ----------------------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML------KEYTGAGTTGRQ  352 (430)
T ss_pred             ----------------------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE------EEEecCCcccch
Confidence                                  124 45789999999999999999999 999999997654      555442     1


Q ss_pred             cCeEEEEecCC-eE-EEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          393 GSVTQLHMDPY-KI-VTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       393 ~~v~~l~~~~~-~~-l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ..-+...|+.. .+ +.---..+.+.-||.+++..+..+.    .+|.+.+..+.-||.+.-+++++  .|-.+++|--.
T Consensus       353 ~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s----lgHn~a~R~i~HSP~~p~FmTcs--dD~raRFWyrr  426 (430)
T KOG0640|consen  353 KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS----LGHNGAVRWIVHSPVEPAFMTCS--DDFRARFWYRR  426 (430)
T ss_pred             hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc----cCCCCCceEEEeCCCCCceeeec--ccceeeeeeec
Confidence            11223345554 33 3333345779999999988877774    67899999999999999999999  77999999643

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.8e-30  Score=235.03  Aligned_cols=274  Identities=18%  Similarity=0.246  Sum_probs=228.6

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      .+-+.|+ ....+|.|. ...+.+|+..++ .......-+.+.|+++.|++             +|.+|+.|..+|.|.|
T Consensus       180 ~nlldWs-s~n~laVal-g~~vylW~~~s~-~v~~l~~~~~~~vtSv~ws~-------------~G~~LavG~~~g~v~i  243 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVAL-GQSVYLWSASSG-SVTELCSFGEELVTSVKWSP-------------DGSHLAVGTSDGTVQI  243 (484)
T ss_pred             hhHhhcc-cCCeEEEEe-cceEEEEecCCC-ceEEeEecCCCceEEEEECC-------------CCCEEEEeecCCeEEE
Confidence            3555666 344555553 368999999886 54444445588999999999             8999999999999999


Q ss_pred             ec--CCceeeeccC-CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784          193 WW--KGSCQRCFKG-HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH  269 (501)
Q Consensus       193 wd--~~~~~~~~~~-h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  269 (501)
                      ||  ..+.+..+.+ |...|-+++|      ++..+.+|+.|+.|..+|++..+.     ....+.+|...|..++|++ 
T Consensus       244 wD~~~~k~~~~~~~~h~~rvg~laW------~~~~lssGsr~~~I~~~dvR~~~~-----~~~~~~~H~qeVCgLkws~-  311 (484)
T KOG0305|consen  244 WDVKEQKKTRTLRGSHASRVGSLAW------NSSVLSSGSRDGKILNHDVRISQH-----VVSTLQGHRQEVCGLKWSP-  311 (484)
T ss_pred             EehhhccccccccCCcCceeEEEec------cCceEEEecCCCcEEEEEEecchh-----hhhhhhcccceeeeeEECC-
Confidence            99  7777888888 9999999999      367999999999999999998775     4445889999999999997 


Q ss_pred             CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE
Q 010784          270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH  349 (501)
Q Consensus       270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~  349 (501)
                      ++.++++|+.|+.+.|||....                                            +++..+..|...|.
T Consensus       312 d~~~lASGgnDN~~~Iwd~~~~--------------------------------------------~p~~~~~~H~aAVK  347 (484)
T KOG0305|consen  312 DGNQLASGGNDNVVFIWDGLSP--------------------------------------------EPKFTFTEHTAAVK  347 (484)
T ss_pred             CCCeeccCCCccceEeccCCCc--------------------------------------------cccEEEeccceeee
Confidence            8999999999999999998543                                            23456777999999


Q ss_pred             EEEEcCC-CcEEEEEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEE-ecCCCcEEEEeCCC
Q 010784          350 SFSIMPS-KSLICTGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTG-GRDDLRINIWETDT  422 (501)
Q Consensus       350 ~v~~~~~-~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~-gs~dg~i~iwd~~~  422 (501)
                      .++|+|- ..+||+|+  .|+ |++||..+++.+      ..+.. ...|.+|.|++.  .++++ |..++.|.||+..+
T Consensus       348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i------~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps  420 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI------DSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS  420 (484)
T ss_pred             EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe------ccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence            9999995 77888887  677 999999987654      55443 678999999998  56555 55678999999999


Q ss_pred             cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      .+.+..+     .+|...|..++++|||..+++|+  .|.++++|++-..
T Consensus       421 ~~~~~~l-----~gH~~RVl~la~SPdg~~i~t~a--~DETlrfw~~f~~  463 (484)
T KOG0305|consen  421 MKLVAEL-----LGHTSRVLYLALSPDGETIVTGA--ADETLRFWNLFDE  463 (484)
T ss_pred             cceeeee-----cCCcceeEEEEECCCCCEEEEec--ccCcEEeccccCC
Confidence            9999999     68899999999999999999999  5699999997664

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.6e-31  Score=220.13  Aligned_cols=260  Identities=17%  Similarity=0.244  Sum_probs=216.9

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeee--------ccCCCCceEEEEeeecCCC
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRC--------FKGHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~--------~~~h~~~v~~l~~s~~~~~  220 (501)
                      +.+..+.|..|+|             ||++|++|+.||.|.|||  +|+..+.        |--+..+|.|+.|+    .
T Consensus       211 g~KSh~EcA~FSP-------------DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FS----R  273 (508)
T KOG0275|consen  211 GQKSHVECARFSP-------------DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFS----R  273 (508)
T ss_pred             ccccchhheeeCC-------------CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeec----c
Confidence            4456678888888             899999999999999999  6655443        33578899999997    8


Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                      +...+++|+.||.|++|.+.++.      ++..+. .|+..|+++.|+. ++..+++++.|.++++--+.+++.      
T Consensus       274 DsEMlAsGsqDGkIKvWri~tG~------ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~------  340 (508)
T KOG0275|consen  274 DSEMLASGSQDGKIKVWRIETGQ------CLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKC------  340 (508)
T ss_pred             cHHHhhccCcCCcEEEEEEecch------HHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchh------
Confidence            99999999999999999999998      466665 8999999999996 788999999999999998887754      


Q ss_pred             ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784          300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD  378 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~  378 (501)
                                                            +..+++|...|+...|+++|..+++++.|+ |++|+.++.++
T Consensus       341 --------------------------------------LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC  382 (508)
T KOG0275|consen  341 --------------------------------------LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTEC  382 (508)
T ss_pred             --------------------------------------HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhh
Confidence                                                  456789999999999999999999999999 99999999877


Q ss_pred             CCCCCCcccccC--cccCeEEEEecCC---eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE
Q 010784          379 AVKPQPMAELDG--HVGSVTQLHMDPY---KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI  453 (501)
Q Consensus       379 ~~~~~~~~~~~~--h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  453 (501)
                      +      .+++.  ...+|+++..-|.   .++++ ...++|.|-++. |+.++++..+...  .+...+++.||.|.++
T Consensus       383 ~------~Tfk~~~~d~~vnsv~~~PKnpeh~iVC-Nrsntv~imn~q-GQvVrsfsSGkRE--gGdFi~~~lSpkGewi  452 (508)
T KOG0275|consen  383 L------STFKPLGTDYPVNSVILLPKNPEHFIVC-NRSNTVYIMNMQ-GQVVRSFSSGKRE--GGDFINAILSPKGEWI  452 (508)
T ss_pred             h------hhccCCCCcccceeEEEcCCCCceEEEE-cCCCeEEEEecc-ceEEeeeccCCcc--CCceEEEEecCCCcEE
Confidence            6      55543  4567888888776   55555 688999999985 8889998655433  4566677899999999


Q ss_pred             EEeecCCCceEEEeeccCC---------------------ccceeecCCCCceeeecc
Q 010784          454 VTASYGEPGLLQFRDFSNA---------------------TCPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       454 ~s~~~d~~g~i~~w~~~~~---------------------~~~~~s~~~d~~~~~w~~  490 (501)
                      .+.+  +|+.++.+.+..+                     ++++++-++||..++|.+
T Consensus       453 Ycig--ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp  508 (508)
T KOG0275|consen  453 YCIG--EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP  508 (508)
T ss_pred             EEEc--cCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence            9999  7799999986543                     356778899999999974

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=8.8e-29  Score=196.27  Aligned_cols=297  Identities=18%  Similarity=0.218  Sum_probs=229.7

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccc------c----c----ccceecccCCcceeEEEeeccCcCcc
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS------E----S----YYRATLSDHKARITCMRLFPLHETSL  169 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~------~----~----~~~~~~~~h~~~V~~~~~~~~~~~~~  169 (501)
                      .........|.+++|+|.|.+.|.|++.++++|-....      +    .    -..+.-+.|++.|.|.+|+|      
T Consensus        26 i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~------   99 (350)
T KOG0641|consen   26 INILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP------   99 (350)
T ss_pred             EEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC------
Confidence            34455677799999999999999999999999875321      1    1    12334467999999999999      


Q ss_pred             cccCCCCcCcEEEEeeCCCceEEec--CC-----ceeeeccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccC
Q 010784          170 FRSEPQRTENVLVTSSCDHSIRLWW--KG-----SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSS  241 (501)
Q Consensus       170 ~~~~~~~~~~~l~s~~~dg~i~vwd--~~-----~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~  241 (501)
                             +|.++++|+.|.+|++.-  ..     ..-..|.-|.+.|..++|.-.+...+.+|++++ .|..|.+-|..+
T Consensus       100 -------~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~  172 (350)
T KOG0641|consen  100 -------CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR  172 (350)
T ss_pred             -------ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence                   899999999999999863  11     122456779999999999744455567788765 466777778777


Q ss_pred             CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEE
Q 010784          242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYI  321 (501)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (501)
                      +.      ..+.+.+|++-|..+-- . ++-++++|+.|.+|++||++....+.....                      
T Consensus       173 g~------~~~a~sghtghilalys-w-n~~m~~sgsqdktirfwdlrv~~~v~~l~~----------------------  222 (350)
T KOG0641|consen  173 GQ------GFHALSGHTGHILALYS-W-NGAMFASGSQDKTIRFWDLRVNSCVNTLDN----------------------  222 (350)
T ss_pred             CC------cceeecCCcccEEEEEE-e-cCcEEEccCCCceEEEEeeeccceeeeccC----------------------
Confidence            76      47889999999987643 2 678999999999999999997744322110                      


Q ss_pred             EeCCcEEEEEcCCCceEeeecc---CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEE
Q 010784          322 ASGSSVVTIDLRTMQKVMTPAI---CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQ  397 (501)
Q Consensus       322 ~~~~~i~~~d~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  397 (501)
                                        .+..   ....|.+++..|.|++|++|-.|. ..+||++.++.      ++.+..|...|.+
T Consensus       223 ------------------~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~------iq~f~phsadir~  278 (350)
T KOG0641|consen  223 ------------------DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM------IQRFHPHSADIRC  278 (350)
T ss_pred             ------------------cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce------eeeeCCCccceeE
Confidence                              0111   246789999999999999999999 99999999654      5999999999999


Q ss_pred             EEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          398 LHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       398 l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +.|+|. .++.+||.|..|++-|+. |.+...+..--...|...+..+.|+|..--+++.+  .|.++.+|.+.
T Consensus       279 vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisss--adkt~tlwa~~  349 (350)
T KOG0641|consen  279 VRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSS--ADKTATLWALN  349 (350)
T ss_pred             EEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccCceEEEEecCccceeeecc--CcceEEEeccC
Confidence            999999 999999999999999986 44433332222245677788889999887788887  56999999764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=9.2e-30  Score=222.02  Aligned_cols=293  Identities=18%  Similarity=0.225  Sum_probs=230.3

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccccc---cee-------------c-ccCCcceeEEEeeccCc
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYY---RAT-------------L-SDHKARITCMRLFPLHE  166 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~---~~~-------------~-~~h~~~V~~~~~~~~~~  166 (501)
                      ..+..|..++.|++++++..+..+++.+++|.-|++.++...   +..             - ++|...|.+++.++   
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~---  212 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS---  212 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC---
Confidence            455668888999999999999999999999999998876322   111             1 37888899999999   


Q ss_pred             CcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784          167 TSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK  244 (501)
Q Consensus       167 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~  244 (501)
                                ||++|++|+.|..|.||+  +...++.+++|.+.|.+++|.    .....+++++.|++|++|+++... 
T Consensus       213 ----------Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr----~gt~~lys~s~Drsvkvw~~~~~s-  277 (479)
T KOG0299|consen  213 ----------DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR----KGTSELYSASADRSVKVWSIDQLS-  277 (479)
T ss_pred             ----------CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeee----cCccceeeeecCCceEEEehhHhH-
Confidence                      899999999999999999  888899999999999999996    566789999999999999999876 


Q ss_pred             cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784          245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (501)
                           .+.++.+|...|..|.... .+..+-+|+.|+++++|++....                                
T Consensus       278 -----~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ees--------------------------------  319 (479)
T KOG0299|consen  278 -----YVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEES--------------------------------  319 (479)
T ss_pred             -----HHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccccc--------------------------------
Confidence                 5889999999999998874 55566666699999999995432                                


Q ss_pred             CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcc---cc---cCcccCeEE
Q 010784          325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMA---EL---DGHVGSVTQ  397 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~---~~---~~h~~~v~~  397 (501)
                                   ...+.++.+.+.|++|- +...+++|++++ |.+|++.+.+.++....-+   ..   -.+..+|++
T Consensus       320 -------------qlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wits  385 (479)
T KOG0299|consen  320 -------------QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITS  385 (479)
T ss_pred             -------------eeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceee
Confidence                         13456678889999987 456788999888 9999999876552211111   11   112248999


Q ss_pred             EEecCC-eEEEEecCCCcEEEEeCCCcc----cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          398 LHMDPY-KIVTGGRDDLRINIWETDTGM----LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       398 l~~~~~-~~l~~gs~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      ++..|. .++++||.+|.|++|.+..+-    ++..+      .-.+.|+.++|+++|+.|++|..-+...=+.|-....
T Consensus       386 la~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l------s~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~  459 (479)
T KOG0299|consen  386 LAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL------SLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSG  459 (479)
T ss_pred             eEecccCceEEecCCCCceEEEEecCCccccceeeec------ccccEEEEEEEccCCCEEEEecccccccceeeEeecc
Confidence            999999 999999999999999998873    33333      2367899999999999888876433333344444333

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=2.2e-29  Score=208.95  Aligned_cols=269  Identities=18%  Similarity=0.243  Sum_probs=214.0

Q ss_pred             CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC
Q 010784          152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE  230 (501)
Q Consensus       152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~  230 (501)
                      ..+.|..|.|+|             .++.|+.++.||++++|| ....++..-.|..++.+.+|.     +...+++|+.
T Consensus        12 P~d~IS~v~f~~-------------~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~-----d~~~~~~G~~   73 (323)
T KOG1036|consen   12 PEDGISSVKFSP-------------SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFA-----DESTIVTGGL   73 (323)
T ss_pred             ChhceeeEEEcC-------------cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeecc-----CCceEEEecc
Confidence            367899999998             678888888999999999 333333334599999999994     6789999999


Q ss_pred             CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784          231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV  310 (501)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  310 (501)
                      ||.|+.+|++++.       ...+..|..+|++|...+ ....+++||+|++|++||.+...      ..........++
T Consensus        74 dg~vr~~Dln~~~-------~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~------~~~~~d~~kkVy  139 (323)
T KOG1036|consen   74 DGQVRRYDLNTGN-------EDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKV------VVGTFDQGKKVY  139 (323)
T ss_pred             CceEEEEEecCCc-------ceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccc------cccccccCceEE
Confidence            9999999999986       466778999999999997 56689999999999999999743      333335556899


Q ss_pred             eeecCCCeEEEEe-CCcEEEEEcCCCceEeeec--cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcc
Q 010784          311 DMKCHESMLYIAS-GSSVVTIDLRTMQKVMTPA--ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMA  386 (501)
Q Consensus       311 ~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~  386 (501)
                      +++..++.+++++ +..+.+||+++........  ..+..+.++++.|++.-+++++-++ |.+=.+...+..  .....
T Consensus       140 ~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~--~skky  217 (323)
T KOG1036|consen  140 CMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA--QSKKY  217 (323)
T ss_pred             EEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH--hhhce
Confidence            9999999999965 4599999999987654322  2356789999999888888888555 665444433221  11124


Q ss_pred             cccCcc---------cCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784          387 ELDGHV---------GSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA  456 (501)
Q Consensus       387 ~~~~h~---------~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  456 (501)
                      .|+.|.         .+|++|+|+|- ..+++|+.||.|.+||..+.+.+..+     ......|..++|+.||..||.|
T Consensus       218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~-----~~~~~SI~slsfs~dG~~LAia  292 (323)
T KOG1036|consen  218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL-----AKYETSISSLSFSMDGSLLAIA  292 (323)
T ss_pred             eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc-----cCCCCceEEEEeccCCCeEEEE
Confidence            455552         47999999999 99999999999999999999999998     3446779999999999999999


Q ss_pred             ecC
Q 010784          457 SYG  459 (501)
Q Consensus       457 ~~d  459 (501)
                      +.-
T Consensus       293 ~sy  295 (323)
T KOG1036|consen  293 SSY  295 (323)
T ss_pred             ech
Confidence            753

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.4e-30  Score=234.79  Aligned_cols=242  Identities=19%  Similarity=0.292  Sum_probs=205.4

Q ss_pred             eEEee-CCcEEEeecCCeeeEEEEecccccc-----cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          115 HILLD-NNDIFSTQGSSIQNIKIDNFLSESY-----YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       115 ~~~~~-~~~~~~~~g~~d~~i~vw~~~~~~~-----~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      .+..+ |+++|+.+|+.||.|++|+......     .+..++.|.+.|+.+....             +++.|+++|.|.
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-------------~~~tlIS~SsDt   95 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-------------NGKTLISASSDT   95 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-------------CCCceEEecCCc
Confidence            44455 6788999999999999999865322     4778899999999999987             789999999999


Q ss_pred             ceEEec--CC--ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc----cccccceeecc-CCCC
Q 010784          189 SIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK----RGQQALKATLY-GHEK  259 (501)
Q Consensus       189 ~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~~~~~-~~~~  259 (501)
                      +|++|+  .+  -++.++..|..-|.|+++.   .++...+|+|+.|+.|.+||++++..    .........+. ++..
T Consensus        96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~---ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~  172 (735)
T KOG0308|consen   96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI---AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD  172 (735)
T ss_pred             eEEEeecccCcchhHhhhhcccchheeeeec---ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence            999998  33  6788999999999999983   36788999999999999999997632    01111222333 7888


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      +|++++.++ .+..+++|+..+.+++||.++++                                            .+.
T Consensus       173 siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~--------------------------------------------kim  207 (735)
T KOG0308|consen  173 SIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCK--------------------------------------------KIM  207 (735)
T ss_pred             ceeeeecCC-cceEEEecCcccceEEecccccc--------------------------------------------cee
Confidence            999999986 67899999999999999998874                                            445


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i  417 (501)
                      .+++|...|..+..++||+.+++++.|+ |++||+...+++      .++..|...|.++..+|+ ..+.+|+.||.|..
T Consensus       208 kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl------~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~  281 (735)
T KOG0308|consen  208 KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL------ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYR  281 (735)
T ss_pred             eeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee------eeEEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence            6779999999999999999999999999 999999986654      899999999999999999 88888899999999


Q ss_pred             EeCCCc
Q 010784          418 WETDTG  423 (501)
Q Consensus       418 wd~~~~  423 (501)
                      =|+++.
T Consensus       282 Tdl~n~  287 (735)
T KOG0308|consen  282 TDLRNP  287 (735)
T ss_pred             cccCCc
Confidence            999884

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=4.9e-29  Score=228.54  Aligned_cols=360  Identities=17%  Similarity=0.194  Sum_probs=250.6

Q ss_pred             EEecCCCCceEEeeCCcEEEeecC--CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          106 FYSVAKPHDHILLDNNDIFSTQGS--SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~~~g~--~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ...+.++++|++|+++|+|+|+|-  ....++||++... ..+..|..|+-.|+|++|+|             .++++++
T Consensus        74 vnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h-~vVAEfvdHKY~vtcvaFsp-------------~~kyvvS  139 (1080)
T KOG1408|consen   74 VNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFH-GVVAEFVDHKYNVTCVAFSP-------------GNKYVVS  139 (1080)
T ss_pred             ecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccc-cchhhhhhccccceeeeecC-------------CCcEEEe
Confidence            344667899999999999999997  6788999999984 67888999999999999999             7899998


Q ss_pred             eeC--CCceEEec-CCceeeeccCCCCceEEEEeeecCCCC---------------------------------------
Q 010784          184 SSC--DHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGS---------------------------------------  221 (501)
Q Consensus       184 ~~~--dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~---------------------------------------  221 (501)
                      .+.  |-.|.+|| .-.....-..-...|..++|+    .+                                       
T Consensus       140 VGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fs----EdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~l  215 (1080)
T KOG1408|consen  140 VGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFS----EDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNL  215 (1080)
T ss_pred             eccccceEEEhhhhhhcccccccccceeEEEEEEc----cCCceeeeeeeeeEEEEEeeccccccCCccccchhhhcccc
Confidence            765  44566775 111100000111222233332    22                                       


Q ss_pred             ------------------------------------------------------CCEEEEeeCCCcEEEEeccCCCc---
Q 010784          222 ------------------------------------------------------GKILASGGEDATVRLWSLSSSGK---  244 (501)
Q Consensus       222 ------------------------------------------------------~~~l~sg~~dg~i~iwd~~~~~~---  244 (501)
                                                                            .+++++|+.+|.|++|+..+-.-   
T Consensus       216 r~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~T  295 (1080)
T KOG1408|consen  216 RFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGT  295 (1080)
T ss_pred             ccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccc
Confidence                                                                  34555555566666655433211   


Q ss_pred             ------------------------------------------------------------cccccceeeccCCCCceeEE
Q 010784          245 ------------------------------------------------------------RGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       245 ------------------------------------------------------------~~~~~~~~~~~~~~~~v~~l  264 (501)
                                                                                  ..+......+-.|...|+.+
T Consensus       296 lpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~V  375 (1080)
T KOG1408|consen  296 LPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDV  375 (1080)
T ss_pred             cccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeee
Confidence                                                                        00011112223355556655


Q ss_pred             EEeec----------CCeEEEEEeCCCeEEEEECCCCccccc-------eeccc-------------------------c
Q 010784          265 SVAGH----------KSFLLVTISKDSKVRVWDTSTSSAVRS-------SCCVG-------------------------M  302 (501)
Q Consensus       265 ~~~~~----------~~~~l~s~s~dg~v~vwd~~~~~~~~~-------~~~~~-------------------------~  302 (501)
                      ...|-          ....|++++.|++|++||+..+..-..       .....                         .
T Consensus       376 e~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~  455 (1080)
T KOG1408|consen  376 ENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVST  455 (1080)
T ss_pred             ccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhh
Confidence            54441          133699999999999999986321100       00000                         0


Q ss_pred             eecCCCceeeecCCCeEEEEeCC---cEEEEEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCCc-EEEEecCC
Q 010784          303 TSVPGVPVDMKCHESMLYIASGS---SVVTIDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~-i~iwd~~~  375 (501)
                      ......+.++..++++..+++|.   .+++|++.+.+....+..|+..|.++.++.-   .++|++++.|+ |.+||...
T Consensus       456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            01122345667788888898874   8999999999999999999999999999853   68999999999 99999865


Q ss_pred             CCCCCCCCCcccccCc-------------------------------------------------ccCeEEEEecCC-eE
Q 010784          376 SQDAVKPQPMAELDGH-------------------------------------------------VGSVTQLHMDPY-KI  405 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h-------------------------------------------------~~~v~~l~~~~~-~~  405 (501)
                      .-.+     ++++.+|                                                 ...++.+++.|. ++
T Consensus       536 ny~l-----~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~  610 (1080)
T KOG1408|consen  536 NYDL-----VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL  610 (1080)
T ss_pred             ccch-----hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce
Confidence            4222     2222222                                                 234667777888 88


Q ss_pred             EEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc------------
Q 010784          406 VTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT------------  473 (501)
Q Consensus       406 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~------------  473 (501)
                      +++++.|..|+||++++|+..+.|++..  .|.+....+...|.|-||++..  .|.++.++|+..++            
T Consensus       611 v~t~cQDrnirif~i~sgKq~k~FKgs~--~~eG~lIKv~lDPSgiY~atSc--sdktl~~~Df~sgEcvA~m~GHsE~V  686 (1080)
T KOG1408|consen  611 VVTVCQDRNIRIFDIESGKQVKSFKGSR--DHEGDLIKVILDPSGIYLATSC--SDKTLCFVDFVSGECVAQMTGHSEAV  686 (1080)
T ss_pred             EEEEecccceEEEeccccceeeeecccc--cCCCceEEEEECCCccEEEEee--cCCceEEEEeccchhhhhhcCcchhe
Confidence            8888999999999999999999997643  4567777889999999999999  55999999976544            


Q ss_pred             ---------cceeecCCCCceeeecccC
Q 010784          474 ---------CPVLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       474 ---------~~~~s~~~d~~~~~w~~~~  492 (501)
                               +.+++.+.||.|.+|.+..
T Consensus       687 TG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  687 TGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eeeeecccchhheeecCCceEEEEECch
Confidence                     4467889999999998763

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.3e-30  Score=211.75  Aligned_cols=291  Identities=18%  Similarity=0.272  Sum_probs=246.6

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      .+.+|..+|-.++......++.+++.|.+.+||.++++ .++..+.||.+.|++++|++             .+.+++++
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-~CL~~Y~GH~GSVNsikfh~-------------s~~L~lTa  208 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-ACLATYTGHTGSVNSIKFHN-------------SGLLLLTA  208 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeeccc-cceeeecccccceeeEEecc-------------ccceEEEc
Confidence            45567778999999988889999999999999999996 89999999999999999999             78999999


Q ss_pred             eCCCceEEec------CC------------------------------------ceeeeccCCCCceEEEEeeecCCCCC
Q 010784          185 SCDHSIRLWW------KG------------------------------------SCQRCFKGHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       185 ~~dg~i~vwd------~~------------------------------------~~~~~~~~h~~~v~~l~~s~~~~~~~  222 (501)
                      +.|++..||.      ..                                    .++..+.+|.+.|.+..|.    ..|
T Consensus       209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL----~gg  284 (481)
T KOG0300|consen  209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL----AGG  284 (481)
T ss_pred             cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh----cCc
Confidence            9999999994      00                                    0123567899999999997    789


Q ss_pred             CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc
Q 010784          223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM  302 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  302 (501)
                      +.+++++.|.+..+||+++++      ++..+.+|....+.++-+| ...++++++.|.+.++||++..           
T Consensus       285 ~Q~vTaSWDRTAnlwDVEtge------~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea-----------  346 (481)
T KOG0300|consen  285 QQMVTASWDRTANLWDVETGE------VVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA-----------  346 (481)
T ss_pred             ceeeeeeccccceeeeeccCc------eeccccCcchhccccccCC-cceEEEEeccCceeEeccchhh-----------
Confidence            999999999999999999998      5899999999999999998 7889999999999999999843           


Q ss_pred             eecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCC
Q 010784          303 TSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVK  381 (501)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~  381 (501)
                                                      -+.+..|++|...|+++.|..+ ..+++|++|. |++||+++...   
T Consensus       347 --------------------------------I~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs---  390 (481)
T KOG0300|consen  347 --------------------------------IQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS---  390 (481)
T ss_pred             --------------------------------cceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC---
Confidence                                            1334678999999999999755 4688999999 99999998754   


Q ss_pred             CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc--cEEEEeec
Q 010784          382 PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG--CRIVTASY  458 (501)
Q Consensus       382 ~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~s~~~  458 (501)
                        ++.++.. ..+++.++++.. .+++.--.+..|++||+. |..+..++.....+|...|.+++|..+.  .-|++++.
T Consensus       391 --plATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGF  466 (481)
T KOG0300|consen  391 --PLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGF  466 (481)
T ss_pred             --cceeeec-CCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccc
Confidence              4566664 678999999988 899988778889999985 6667777655567889999999998654  46778884


Q ss_pred             CCCceEEEeeccCCc
Q 010784          459 GEPGLLQFRDFSNAT  473 (501)
Q Consensus       459 d~~g~i~~w~~~~~~  473 (501)
                        |..+.-|++..+.
T Consensus       467 --DR~v~gW~in~p~  479 (481)
T KOG0300|consen  467 --DRMVAGWKINTPT  479 (481)
T ss_pred             --cceeeeeEecccC
Confidence              4899999887653

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-29  Score=217.61  Aligned_cols=269  Identities=16%  Similarity=0.210  Sum_probs=215.7

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-----CCceeeeccCCCCceEEEEeeecC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-----KGSCQRCFKGHNGPVSTLSDKLLG  218 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-----~~~~~~~~~~h~~~v~~l~~s~~~  218 (501)
                      +..+++..|++.|+-+.||+             +|++|||++.|.+..+|+     .-+..+++.+|..+|..+.||   
T Consensus       215 qt~qil~~htdEVWfl~FS~-------------nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS---  278 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSH-------------NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS---  278 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcC-------------CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC---
Confidence            55677889999999999999             899999999999999997     334567889999999999998   


Q ss_pred             CCCCCEEEEeeCCCcEEEEeccCCCccccccceeec-cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784          219 DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL-YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       219 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  297 (501)
                       ||.++|++|+.|..+.+||..++..      ...+ .++...+.+.+|.| ++..+++|+.|+.+..||+.....    
T Consensus       279 -PDdryLlaCg~~e~~~lwDv~tgd~------~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~----  346 (519)
T KOG0293|consen  279 -PDDRYLLACGFDEVLSLWDVDTGDL------RHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNIL----  346 (519)
T ss_pred             -CCCCeEEecCchHheeeccCCcchh------hhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchh----
Confidence             8999999999999999999999974      3333 34567899999998 888999999999999999976521    


Q ss_pred             ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc-CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784          298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI-CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~  375 (501)
                                                               ...++ ....|.+++.++||+++++.+.|. |++++..+
T Consensus       347 -----------------------------------------~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~  385 (519)
T KOG0293|consen  347 -----------------------------------------GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA  385 (519)
T ss_pred             -----------------------------------------hcccccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence                                                     01111 135588999999999999999888 99999987


Q ss_pred             CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec-cccEE
Q 010784          376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV-SGCRI  453 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l  453 (501)
                      ....      ... ....+|++++.+.+ +++...-.+..+++||++..+.++.+.+|..   ..-+-.-||-- +..++
T Consensus       386 ~~dr------~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq---~~fiIrSCFgg~~~~fi  455 (519)
T KOG0293|consen  386 RVDR------GLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ---GHFIIRSCFGGGNDKFI  455 (519)
T ss_pred             hhhh------ccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc---cceEEEeccCCCCcceE
Confidence            5432      222 33568999999999 7777766899999999999999999965432   12233335654 45899


Q ss_pred             EEeecCCCceEEEeeccCCc----------------------cceeecCCCCceeeecccCC
Q 010784          454 VTASYGEPGLLQFRDFSNAT----------------------CPVLKHEVQNDSKFWGPQCY  493 (501)
Q Consensus       454 ~s~~~d~~g~i~~w~~~~~~----------------------~~~~s~~~d~~~~~w~~~~~  493 (501)
                      ++||  +|+.|++|+...+.                      ..++|+|+||++|+|.+...
T Consensus       456 aSGS--ED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  456 ASGS--EDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EecC--CCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            9999  88999999955332                      34679999999999998754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=3.9e-29  Score=216.40  Aligned_cols=276  Identities=17%  Similarity=0.200  Sum_probs=230.8

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      .+.++.+.+....++||+.|..+.++|..++ +.+.+++||...|+.+.|+|             +...+++++.|..|+
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~-------------~~~~v~~aSad~~i~  286 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHK-------------DLDTVITASADEIIR  286 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCcceEEEEEEecc-------------chhheeecCCcceEE
Confidence            3777888887899999999999999999984 99999999999999999999             789999999999999


Q ss_pred             Eec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc--CCCCceeEEEEe
Q 010784          192 LWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY--GHEKPIKLMSVA  267 (501)
Q Consensus       192 vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~  267 (501)
                      ||.  ...+......|.++|+.+..+    +.|.||++++.||+..+.|+.++..      +....  ...-.+++.+|+
T Consensus       287 vws~~~~s~~~~~~~h~~~V~~ls~h----~tgeYllsAs~d~~w~Fsd~~~g~~------lt~vs~~~s~v~~ts~~fH  356 (506)
T KOG0289|consen  287 VWSVPLSSEPTSSRPHEEPVTGLSLH----PTGEYLLSASNDGTWAFSDISSGSQ------LTVVSDETSDVEYTSAAFH  356 (506)
T ss_pred             eeccccccCccccccccccceeeeec----cCCcEEEEecCCceEEEEEccCCcE------EEEEeeccccceeEEeeEc
Confidence            998  555667778899999999997    8999999999999999999999874      22222  223458999999


Q ss_pred             ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCc
Q 010784          268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPI  347 (501)
Q Consensus       268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  347 (501)
                      | |+.+|.+|..||.|++||+..+.                                            .+..|.+|.++
T Consensus       357 p-DgLifgtgt~d~~vkiwdlks~~--------------------------------------------~~a~Fpght~~  391 (506)
T KOG0289|consen  357 P-DGLIFGTGTPDGVVKIWDLKSQT--------------------------------------------NVAKFPGHTGP  391 (506)
T ss_pred             C-CceEEeccCCCceEEEEEcCCcc--------------------------------------------ccccCCCCCCc
Confidence            8 89999999999999999998763                                            23467889999


Q ss_pred             EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecCC-eEEEEecCCCcEEEEeCC--C
Q 010784          348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDPY-KIVTGGRDDLRINIWETD--T  422 (501)
Q Consensus       348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~--~  422 (501)
                      |..++|+.+|.+|+++++|+ |++||+|..+..      .++... ...|.++.|++. .+++.++.|=.|++++-.  +
T Consensus       392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~------kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~  465 (506)
T KOG0289|consen  392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNF------KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS  465 (506)
T ss_pred             eeEEEeccCceEEEEEecCCeEEEEEehhhccc------ceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence            99999999999999999999 999999987654      444322 236999999999 888877677666666533  4


Q ss_pred             cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      ..++..+     ..|.+..+++.|....++++++|  .|..++++.+
T Consensus       466 W~~~~~~-----~~~sg~st~v~Fg~~aq~l~s~s--md~~l~~~a~  505 (506)
T KOG0289|consen  466 WTEIKEL-----ADHSGLSTGVRFGEHAQYLASTS--MDAILRLYAL  505 (506)
T ss_pred             ceeeehh-----hhcccccceeeecccceEEeecc--chhheEEeec
Confidence            5667777     45667889999999999999999  5577887754

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=3e-30  Score=207.56  Aligned_cols=268  Identities=17%  Similarity=0.181  Sum_probs=228.5

Q ss_pred             cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCC
Q 010784          145 YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       145 ~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~  222 (501)
                      .-.+..||+.+|..++|+|          ..|+|-+|++++.||.-.+-+  +|.-+.+|.+|.+.|.+...    +.+.
T Consensus         6 ~pl~c~ghtrpvvdl~~s~----------itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l----~~na   71 (334)
T KOG0278|consen    6 TPLTCHGHTRPVVDLAFSP----------ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATL----NKNA   71 (334)
T ss_pred             CceEEcCCCcceeEEeccC----------CCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeec----Cchh
Confidence            3446679999999999998          356899999999999988886  89999999999999999887    3677


Q ss_pred             CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc
Q 010784          223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM  302 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  302 (501)
                      ...++++.|-+.++||.-++..      +..+. |..-|..++|+. +.++|++|+.+..++|||++..+.         
T Consensus        72 ~~aasaaadftakvw~a~tgde------lhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~A---------  134 (334)
T KOG0278|consen   72 TRAASAAADFTAKVWDAVTGDE------LHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKA---------  134 (334)
T ss_pred             hhhhhhcccchhhhhhhhhhhh------hhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCC---------
Confidence            7889999999999999999874      55554 888999999996 889999999999999999987642         


Q ss_pred             eecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCC
Q 010784          303 TSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVK  381 (501)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~  381 (501)
                                                        +...+.+|.+.|..+.|....+.|++.++|+ ||+||.+++..+  
T Consensus       135 ----------------------------------pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v--  178 (334)
T KOG0278|consen  135 ----------------------------------PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEV--  178 (334)
T ss_pred             ----------------------------------CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEE--
Confidence                                              2346678999999999999888888889888 999999998765  


Q ss_pred             CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC
Q 010784          382 PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE  460 (501)
Q Consensus       382 ~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~  460 (501)
                          +++.- ..+|+++.++++ ++++++ ..+.|.+||..+..+++.+..      ...|.+..++|+...+++|+  +
T Consensus       179 ----~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~------P~nV~SASL~P~k~~fVaGg--e  244 (334)
T KOG0278|consen  179 ----QSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM------PCNVESASLHPKKEFFVAGG--E  244 (334)
T ss_pred             ----EEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC------ccccccccccCCCceEEecC--c
Confidence                66664 678999999999 888885 888999999999999988842      45688899999999999998  6


Q ss_pred             CceEEEeec----------------------cCCccceeecCCCCceeeecccCC
Q 010784          461 PGLLQFRDF----------------------SNATCPVLKHEVQNDSKFWGPQCY  493 (501)
Q Consensus       461 ~g~i~~w~~----------------------~~~~~~~~s~~~d~~~~~w~~~~~  493 (501)
                      |..++.||+                      ++++...++||+||++++|.....
T Consensus       245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence            788888874                      455666889999999999976544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=234.50  Aligned_cols=255  Identities=23%  Similarity=0.387  Sum_probs=216.8

Q ss_pred             CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeee-ccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784          152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRC-FKGHNGPVSTLSDKLLGDGSGKILASG  228 (501)
Q Consensus       152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~-~~~h~~~v~~l~~s~~~~~~~~~l~sg  228 (501)
                      |...+.+..|..               +++++++.|++|++||  ++..+.. +.+|.+.|.++++.    ..+.++++|
T Consensus       207 ~~~~~~~~q~~~---------------~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~----~~~~~lvsg  267 (537)
T KOG0274|consen  207 DDHVVLCLQLHD---------------GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFP----SGGDKLVSG  267 (537)
T ss_pred             Ccchhhhheeec---------------CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEe----cCCCEEEEE
Confidence            566788888864               7999999999999999  7777777 99999999999994    468899999


Q ss_pred             eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC
Q 010784          229 GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV  308 (501)
Q Consensus       229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  308 (501)
                      +.|.++++||..++.      +...+.+|...|.++...   +..+++|+.|.+|++|++.+++                
T Consensus       268 S~D~t~rvWd~~sg~------C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~----------------  322 (537)
T KOG0274|consen  268 STDKTERVWDCSTGE------CTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGA----------------  322 (537)
T ss_pred             ecCCcEEeEecCCCc------EEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcc----------------
Confidence            999999999999987      699999999999998875   4588889999999999998763                


Q ss_pred             ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc
Q 010784          309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE  387 (501)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~  387 (501)
                                                  .+..+.+|.++|.++..+  +.++++|+.|+ |++||+.+++++      .+
T Consensus       323 ----------------------------~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl------~s  366 (537)
T KOG0274|consen  323 ----------------------------CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCL------KS  366 (537)
T ss_pred             ----------------------------eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceee------ee
Confidence                                        345666799999999996  88999999998 999999986655      99


Q ss_pred             ccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCc-ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784          388 LDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTG-MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQF  466 (501)
Q Consensus       388 ~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~  466 (501)
                      +.+|...|+++.+.+...+.+|+.|+.|++||++++ +++.++     .+|..-+..+.+  .+++|++++  .|+.|++
T Consensus       367 l~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl-----~~h~~~v~~l~~--~~~~Lvs~~--aD~~Ik~  437 (537)
T KOG0274|consen  367 LSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTL-----QGHTSLVSSLLL--RDNFLVSSS--ADGTIKL  437 (537)
T ss_pred             ecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhh-----cCCccccccccc--ccceeEecc--ccccEEE
Confidence            999999999999988656677789999999999999 999999     566667755444  788999999  5599999


Q ss_pred             eeccCCc--------------------cceeecCCCCceeeecccCCCC
Q 010784          467 RDFSNAT--------------------CPVLKHEVQNDSKFWGPQCYSD  495 (501)
Q Consensus       467 w~~~~~~--------------------~~~~s~~~d~~~~~w~~~~~~~  495 (501)
                      ||...++                    ..+++.+.|+.+++|++.....
T Consensus       438 WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  438 WDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             eecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence            9966433                    3345677899999998876653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.7e-28  Score=201.53  Aligned_cols=265  Identities=18%  Similarity=0.172  Sum_probs=211.0

Q ss_pred             EeecCCeeeEEEEecccc-----------cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEe
Q 010784          125 STQGSSIQNIKIDNFLSE-----------SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW  193 (501)
Q Consensus       125 ~~~g~~d~~i~vw~~~~~-----------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  193 (501)
                      ++.|++...|.=+++...           ..++..+..|.+.|++++.+               +.++|+|+.|-+|+||
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---------------~~~~aSGssDetI~IY   68 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---------------GPYVASGSSDETIHIY   68 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---------------ceeEeccCCCCcEEEE
Confidence            566777777766665432           12356678999999999994               6999999999999999


Q ss_pred             c--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC
Q 010784          194 W--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS  271 (501)
Q Consensus       194 d--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  271 (501)
                      |  ....+..+..|.+.|+++.|.+  +...+.|++|+.||.|.+|+...-.      ++..+++|.+.|+.++++| .+
T Consensus        69 Dm~k~~qlg~ll~HagsitaL~F~~--~~S~shLlS~sdDG~i~iw~~~~W~------~~~slK~H~~~Vt~lsiHP-S~  139 (362)
T KOG0294|consen   69 DMRKRKQLGILLSHAGSITALKFYP--PLSKSHLLSGSDDGHIIIWRVGSWE------LLKSLKAHKGQVTDLSIHP-SG  139 (362)
T ss_pred             eccchhhhcceeccccceEEEEecC--CcchhheeeecCCCcEEEEEcCCeE------EeeeecccccccceeEecC-CC
Confidence            9  6667778888999999999963  1223489999999999999998765      6999999999999999999 78


Q ss_pred             eEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEE
Q 010784          272 FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSF  351 (501)
Q Consensus       272 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v  351 (501)
                      ++.++.+.|+.+++||+-.++.-..                                          ..+   ....+.+
T Consensus       140 KLALsVg~D~~lr~WNLV~Gr~a~v------------------------------------------~~L---~~~at~v  174 (362)
T KOG0294|consen  140 KLALSVGGDQVLRTWNLVRGRVAFV------------------------------------------LNL---KNKATLV  174 (362)
T ss_pred             ceEEEEcCCceeeeehhhcCcccee------------------------------------------ecc---CCcceee
Confidence            8999999999999999988753211                                          011   2223448


Q ss_pred             EEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCccccccccc
Q 010784          352 SIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLC  431 (501)
Q Consensus       352 ~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~  431 (501)
                      .|+|.|.+++.++.++|-+|.+.+.+..      ..+.. ...+.++.|.....+++|..|+.|.+||..+..++..+  
T Consensus       175 ~w~~~Gd~F~v~~~~~i~i~q~d~A~v~------~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~--  245 (362)
T KOG0294|consen  175 SWSPQGDHFVVSGRNKIDIYQLDNASVF------REIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEF--  245 (362)
T ss_pred             EEcCCCCEEEEEeccEEEEEecccHhHh------hhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCccceee--
Confidence            9999999999999999999999875432      33322 34577777877755555569999999999998888888  


Q ss_pred             CCCCCCCcceeeeEe--eccccEEEEeecCCCceEEEeeccCC
Q 010784          432 NYPEEADISTGCSAM--AVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       432 ~~~~~~~~~v~~~~~--s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                         .+|..+|..+.+  .|++.+|+++|  .||.|++||++..
T Consensus       246 ---~AH~~RVK~i~~~~~~~~~~lvTaS--SDG~I~vWd~~~~  283 (362)
T KOG0294|consen  246 ---LAHENRVKDIASYTNPEHEYLVTAS--SDGFIKVWDIDME  283 (362)
T ss_pred             ---ecchhheeeeEEEecCCceEEEEec--cCceEEEEEcccc
Confidence               678889999874  36789999999  5599999999876

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=4.8e-28  Score=230.06  Aligned_cols=262  Identities=19%  Similarity=0.139  Sum_probs=192.1

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEeccccc---------cc---ceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSES---------YY---RATLSDHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~---------~~---~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      |+.....+++..+++++.+.....|+...+.         +.   ...+.+|.+.|++++|+|.            ++++
T Consensus        23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~------------d~~~   90 (493)
T PTZ00421         23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF------------DPQK   90 (493)
T ss_pred             cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC------------CCCE
Confidence            4444455555555555555666666543221         11   1247899999999999984            5789


Q ss_pred             EEEeeCCCceEEec--CC-------ceeeeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccccccc
Q 010784          181 LVTSSCDHSIRLWW--KG-------SCQRCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRGQQAL  250 (501)
Q Consensus       181 l~s~~~dg~i~vwd--~~-------~~~~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  250 (501)
                      |++|+.||+|++||  .+       ..+..+.+|...|.+++|+    |+ +++|++|+.|++|++||+.++.      .
T Consensus        91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~----P~~~~iLaSgs~DgtVrIWDl~tg~------~  160 (493)
T PTZ00421         91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFH----PSAMNVLASAGADMVVNVWDVERGK------A  160 (493)
T ss_pred             EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeC----cCCCCEEEEEeCCCEEEEEECCCCe------E
Confidence            99999999999998  22       2456788999999999997    54 4799999999999999999876      4


Q ss_pred             eeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEE
Q 010784          251 KATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI  330 (501)
Q Consensus       251 ~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  330 (501)
                      ...+.+|...|.+++|+| ++.+|++++.|+.|++||+++++.                                     
T Consensus       161 ~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~-------------------------------------  202 (493)
T PTZ00421        161 VEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTI-------------------------------------  202 (493)
T ss_pred             EEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcE-------------------------------------
Confidence            677889999999999998 788999999999999999988743                                     


Q ss_pred             EcCCCceEeeeccCCCc-EEEEEEcCCCcEEEEEc----CCc-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecCC
Q 010784          331 DLRTMQKVMTPAICKPI-LHSFSIMPSKSLICTGG----IGK-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDPY  403 (501)
Q Consensus       331 d~~~~~~~~~~~~~~~~-v~~v~~~~~~~~l~~~~----~d~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~  403 (501)
                             +..+.+|.+. +..+.|.+++..+++++    .++ |++||+++....     +.....+ ...+....|+++
T Consensus       203 -------v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p-----~~~~~~d~~~~~~~~~~d~d  270 (493)
T PTZ00421        203 -------VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP-----YSTVDLDQSSALFIPFFDED  270 (493)
T ss_pred             -------EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc-----eeEeccCCCCceEEEEEcCC
Confidence                   2334455543 44677888876666544    366 999999876432     2333322 345556678888


Q ss_pred             -eEEEEec-CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784          404 -KIVTGGR-DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG  450 (501)
Q Consensus       404 -~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  450 (501)
                       .++++++ .|+.|++||+.+++.+.....    .+..++.+++|.|..
T Consensus       271 ~~~L~lggkgDg~Iriwdl~~~~~~~~~~~----~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        271 TNLLYIGSKGEGNIRCFELMNERLTFCSSY----SSVEPHKGLCMMPKW  315 (493)
T ss_pred             CCEEEEEEeCCCeEEEEEeeCCceEEEeec----cCCCCCcceEecccc
Confidence             6555554 699999999999887766532    234567788888854

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=4.7e-29  Score=217.62  Aligned_cols=258  Identities=19%  Similarity=0.303  Sum_probs=207.2

Q ss_pred             ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CCce--------eeeccCCCCceEEEEeeec
Q 010784          150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KGSC--------QRCFKGHNGPVSTLSDKLL  217 (501)
Q Consensus       150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~~~--------~~~~~~h~~~v~~l~~s~~  217 (501)
                      -.|.+.|+.+.+-|+            +.+++++++..+.|.|||    ....        -..+.+|+..-.+++|++ 
T Consensus       121 i~h~gEVnRaRymPQ------------np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~-  187 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQ------------NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNR-  187 (422)
T ss_pred             ccCCccchhhhhCCC------------CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccc-
Confidence            368899999999996            678899999999999998    1111        126788999888899973 


Q ss_pred             CCCCCCEEEEeeCCCcEEEEeccCCCcc-ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784          218 GDGSGKILASGGEDATVRLWSLSSSGKR-GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS  296 (501)
Q Consensus       218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~  296 (501)
                        ...-.|++|+.|++|++||+...... ....+...+.+|...|..++|++....+|++++.|+.+.|||+|+.+.   
T Consensus       188 --~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~---  262 (422)
T KOG0264|consen  188 --QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS---  262 (422)
T ss_pred             --ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC---
Confidence              44568999999999999999876542 335567788999999999999998899999999999999999996311   


Q ss_pred             eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecC
Q 010784          297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIR  374 (501)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~  374 (501)
                                                             +......+|.+.|.+++|+|- +.+||+|+.|+ |.+||+|
T Consensus       263 ---------------------------------------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlR  303 (422)
T KOG0264|consen  263 ---------------------------------------KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLR  303 (422)
T ss_pred             ---------------------------------------CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeech
Confidence                                                   122345679999999999995 77889999888 9999999


Q ss_pred             CCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccc---------cCCCCCCCcceee
Q 010784          375 RSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLL---------CNYPEEADISTGC  443 (501)
Q Consensus       375 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~v~~  443 (501)
                      +...     ++.++.+|...|..+.|+|.  .++|+++.|+++.|||+..-...+.-.         .....+|...|..
T Consensus       304 nL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~D  378 (422)
T KOG0264|consen  304 NLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSD  378 (422)
T ss_pred             hccc-----CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccc
Confidence            9753     57999999999999999999  999999999999999997532222100         0012578899999


Q ss_pred             eEeeccccEEEEeecCCCceEEEeecc
Q 010784          444 SAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       444 ~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +.|+|...++++... +|+.+.||...
T Consensus       379 fsWnp~ePW~I~Sva-eDN~LqIW~~s  404 (422)
T KOG0264|consen  379 FSWNPNEPWTIASVA-EDNILQIWQMA  404 (422)
T ss_pred             ccCCCCCCeEEEEec-CCceEEEeecc
Confidence            999998876655443 78999999876

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.8e-28  Score=230.73  Aligned_cols=239  Identities=18%  Similarity=0.208  Sum_probs=181.3

Q ss_pred             cCcEEEEeeCCCceEEec-CC-----------ce---eeeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEecc
Q 010784          177 TENVLVTSSCDHSIRLWW-KG-----------SC---QRCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLS  240 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd-~~-----------~~---~~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~  240 (501)
                      ++..+++++.+.....|+ .+           +.   ...+.+|.+.|.+++|+    | ++++|++|+.||+|++||+.
T Consensus        31 d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fs----P~d~~~LaSgS~DgtIkIWdi~  106 (493)
T PTZ00421         31 DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFN----PFDPQKLFTASEDGTIMGWGIP  106 (493)
T ss_pred             CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEc----CCCCCEEEEEeCCCEEEEEecC
Confidence            555666666666666665 22           11   12467899999999997    5 77899999999999999997


Q ss_pred             CCCcc-ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784          241 SSGKR-GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML  319 (501)
Q Consensus       241 ~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (501)
                      ++... .....+..+.+|...|.+++|+|...++|++|+.|+.|++||+++++.                          
T Consensus       107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--------------------------  160 (493)
T PTZ00421        107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--------------------------  160 (493)
T ss_pred             CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--------------------------
Confidence            65310 111246678899999999999986667999999999999999987632                          


Q ss_pred             EEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccC-eEE
Q 010784          320 YIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGS-VTQ  397 (501)
Q Consensus       320 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~  397 (501)
                                        +..+..|...|.+++|+|+|.+|++++.|+ |++||+++++.+      .++.+|.+. +..
T Consensus       161 ------------------~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v------~tl~~H~~~~~~~  216 (493)
T PTZ00421        161 ------------------VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV------SSVEAHASAKSQR  216 (493)
T ss_pred             ------------------EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE------EEEecCCCCcceE
Confidence                              234567889999999999999999999998 999999987654      777888764 446


Q ss_pred             EEecCC--eEEEEe---cCCCcEEEEeCCCccc-ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          398 LHMDPY--KIVTGG---RDDLRINIWETDTGML-ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       398 l~~~~~--~~l~~g---s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      +.|.++  .++++|   +.|+.|++||+++... +....    ......+....|++++++|++++. .|+.|++||+..
T Consensus       217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~----~d~~~~~~~~~~d~d~~~L~lggk-gDg~Iriwdl~~  291 (493)
T PTZ00421        217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD----LDQSSALFIPFFDEDTNLLYIGSK-GEGNIRCFELMN  291 (493)
T ss_pred             EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec----cCCCCceEEEEEcCCCCEEEEEEe-CCCeEEEEEeeC
Confidence            778887  455544   3589999999987543 33221    112345566789999999998874 479999999987


Q ss_pred             Ccc
Q 010784          472 ATC  474 (501)
Q Consensus       472 ~~~  474 (501)
                      +..
T Consensus       292 ~~~  294 (493)
T PTZ00421        292 ERL  294 (493)
T ss_pred             Cce
Confidence            664

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.9e-29  Score=206.99  Aligned_cols=275  Identities=22%  Similarity=0.338  Sum_probs=226.6

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~  220 (501)
                      .++.+.+.||++.|+.++...             ....+.+++.|.+.+||.  .+.|+.++.+|.+.|+++.|+    +
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~-------------tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh----~  200 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADS-------------TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH----N  200 (481)
T ss_pred             Eeehhhhcccccceeeehhhc-------------CCcceeecccccceeEEeeccccceeeecccccceeeEEec----c
Confidence            467788999999999999876             567999999999999998  999999999999999999998    7


Q ss_pred             CCCEEEEeeCCCcEEEEec------cCCCc----------------------------cccccceeeccCCCCceeEEEE
Q 010784          221 SGKILASGGEDATVRLWSL------SSSGK----------------------------RGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~------~~~~~----------------------------~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                      .+.++++++.|++..||..      .....                            .....++..+.+|.+.|.+..|
T Consensus       201 s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW  280 (481)
T KOG0300|consen  201 SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW  280 (481)
T ss_pred             ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh
Confidence            8999999999999999972      11000                            0123355677889999988888


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP  346 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  346 (501)
                      .. +++.+++++.|.+-.+||++++.                                            .+..+.+|..
T Consensus       281 L~-gg~Q~vTaSWDRTAnlwDVEtge--------------------------------------------~v~~LtGHd~  315 (481)
T KOG0300|consen  281 LA-GGQQMVTASWDRTANLWDVETGE--------------------------------------------VVNILTGHDS  315 (481)
T ss_pred             hc-CcceeeeeeccccceeeeeccCc--------------------------------------------eeccccCcch
Confidence            85 78899999999999999988874                                            4456778999


Q ss_pred             cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCc-c
Q 010784          347 ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTG-M  424 (501)
Q Consensus       347 ~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~-~  424 (501)
                      ..+.++-+|..+++++.+.|. .++||++..     ...+..|++|...|+++.|.-+.-+++||.|.+|++||+++. .
T Consensus       316 ELtHcstHptQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs  390 (481)
T KOG0300|consen  316 ELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS  390 (481)
T ss_pred             hccccccCCcceEEEEeccCceeEeccchhh-----cceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC
Confidence            999999999999999999999 999999953     345788999999999999999966677789999999999884 4


Q ss_pred             cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc---------------------------ccee
Q 010784          425 LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT---------------------------CPVL  477 (501)
Q Consensus       425 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~---------------------------~~~~  477 (501)
                      ++.++.      ..++++.++.+..+..|+.-.  ++..|++||++-..                           +-+.
T Consensus       391 plATIR------tdS~~NRvavs~g~~iIAiPh--DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLf  462 (481)
T KOG0300|consen  391 PLATIR------TDSPANRVAVSKGHPIIAIPH--DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLF  462 (481)
T ss_pred             cceeee------cCCccceeEeecCCceEEecc--CCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccc
Confidence            566664      356788999999998999887  67899999976322                           2234


Q ss_pred             ecCCCCceeeecccC
Q 010784          478 KHEVQNDSKFWGPQC  492 (501)
Q Consensus       478 s~~~d~~~~~w~~~~  492 (501)
                      +++-|..+.-|++..
T Consensus       463 tcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  463 TCGFDRMVAGWKINT  477 (481)
T ss_pred             cccccceeeeeEecc
Confidence            566777777777654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.2e-28  Score=215.16  Aligned_cols=253  Identities=17%  Similarity=0.281  Sum_probs=209.7

Q ss_pred             EecCCCCceEEeeCC-cEEEeecCCeeeEEEEeccccc---------ccceecccCCcceeEEEeeccCcCcccccCCCC
Q 010784          107 YSVAKPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSES---------YYRATLSDHKARITCMRLFPLHETSLFRSEPQR  176 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~~---------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~  176 (501)
                      +.|+..|+.+..-|. -.++|+++..+.+.|||..+-.         .+-.+|.||.+.=+++.|++.            
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~------------  188 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ------------  188 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc------------
Confidence            456777888888765 4667788999999999976421         222378899998889999986            


Q ss_pred             cCcEEEEeeCCCceEEec---CC------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc
Q 010784          177 TENVLVTSSCDHSIRLWW---KG------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ  247 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd---~~------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  247 (501)
                      ....|++|+.|++|++||   .+      .....+.+|+..|..++|++   ....+|++++.|+.+.|||++++.    
T Consensus       189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~---~h~~lF~sv~dd~~L~iwD~R~~~----  261 (422)
T KOG0264|consen  189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHP---LHEDLFGSVGDDGKLMIWDTRSNT----  261 (422)
T ss_pred             cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccc---cchhhheeecCCCeEEEEEcCCCC----
Confidence            667899999999999998   11      12356789999999999995   667799999999999999999631    


Q ss_pred             ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcE
Q 010784          248 QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV  327 (501)
Q Consensus       248 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  327 (501)
                      .++.....+|.++|.|++|+|.++.+|||||.|++|.+||+|+.+                                   
T Consensus       262 ~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-----------------------------------  306 (422)
T KOG0264|consen  262 SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-----------------------------------  306 (422)
T ss_pred             CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-----------------------------------
Confidence            125777889999999999999999999999999999999999864                                   


Q ss_pred             EEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCC--------CCCCCcccccCcccCeEE
Q 010784          328 VTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDA--------VKPQPMAELDGHVGSVTQ  397 (501)
Q Consensus       328 ~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~--------~~~~~~~~~~~h~~~v~~  397 (501)
                              +++.++.+|...|..|.|+|. ...|++++.|+ +.+||+..-...        ..++++....||...|..
T Consensus       307 --------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~D  378 (422)
T KOG0264|consen  307 --------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSD  378 (422)
T ss_pred             --------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccc
Confidence                    245788899999999999997 66788888888 999999764322        124556777899999999


Q ss_pred             EEecCC--eEEEEecCCCcEEEEeCC
Q 010784          398 LHMDPY--KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       398 l~~~~~--~~l~~gs~dg~i~iwd~~  421 (501)
                      +.|+|.  ..+++.+.|+.++||+..
T Consensus       379 fsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  379 FSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccCCCCCCeEEEEecCCceEEEeecc
Confidence            999999  888889999999999975

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.8e-27  Score=197.57  Aligned_cols=256  Identities=16%  Similarity=0.182  Sum_probs=205.7

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      +..+.+..-.+.|+++.|++             +|.++++++.|.+++|||  .++.++++..+.-.|..++|.    ..
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~-------------~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Ft----h~   67 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSD-------------DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFT----HH   67 (311)
T ss_pred             ccccccccCCCceeEEEecC-------------CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEe----cC
Confidence            45566777788999999999             899999999999999999  888999998888889999986    44


Q ss_pred             CCEEEEeeC--CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784          222 GKILASGGE--DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       222 ~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                      .+.++.++.  |.+||.-++.+++      .++.+.||...|..|+.+| .+..+++++.|++|++||++..++....  
T Consensus        68 ~~~~i~sStk~d~tIryLsl~dNk------ylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l--  138 (311)
T KOG1446|consen   68 SNTVIHSSTKEDDTIRYLSLHDNK------YLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLL--  138 (311)
T ss_pred             CceEEEccCCCCCceEEEEeecCc------eEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEE--
Confidence            556666665  8899999999987      6999999999999999999 5589999999999999999976542211  


Q ss_pred             ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784          300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD  378 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~  378 (501)
                                                                  +...-..++|+|+|-++|++.... |++||+++...
T Consensus       139 --------------------------------------------~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk  174 (311)
T KOG1446|consen  139 --------------------------------------------NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK  174 (311)
T ss_pred             --------------------------------------------ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence                                                        112223578999999999999887 99999998642


Q ss_pred             CCCCCCccccc---CcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEE
Q 010784          379 AVKPQPMAELD---GHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIV  454 (501)
Q Consensus       379 ~~~~~~~~~~~---~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  454 (501)
                          .|..++.   +.....+.|.|+|+ +.+..++..+.+++.|.-+|..+.++..+...  ..--...+|+||+++++
T Consensus       175 ----gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~--~~~~~~a~ftPds~Fvl  248 (311)
T KOG1446|consen  175 ----GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA--GNLPLSATFTPDSKFVL  248 (311)
T ss_pred             ----CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC--CCcceeEEECCCCcEEE
Confidence                2333333   33567899999999 66666679999999999999999999654422  11225678999999999


Q ss_pred             EeecCCCceEEEeeccCCcccee
Q 010784          455 TASYGEPGLLQFRDFSNATCPVL  477 (501)
Q Consensus       455 s~~~d~~g~i~~w~~~~~~~~~~  477 (501)
                      +|+  +||+|.+|++.++....+
T Consensus       249 ~gs--~dg~i~vw~~~tg~~v~~  269 (311)
T KOG1446|consen  249 SGS--DDGTIHVWNLETGKKVAV  269 (311)
T ss_pred             Eec--CCCcEEEEEcCCCcEeeE
Confidence            999  679999999987775444

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=3.6e-28  Score=222.88  Aligned_cols=327  Identities=15%  Similarity=0.149  Sum_probs=242.4

Q ss_pred             eEEeeCCcEEEeecCCeeeEEEEeccccccc--ceecccCCcceeEEEeeccCc--CcccccCCCCcCcEEEEeeCCCce
Q 010784          115 HILLDNNDIFSTQGSSIQNIKIDNFLSESYY--RATLSDHKARITCMRLFPLHE--TSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       115 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~--~~~~~~h~~~V~~~~~~~~~~--~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      .+.|++....+.+--.|+.++|||+..-.+.  ...+-.|...|+.+.-.|-+-  .+..++    -...|+|++.|++|
T Consensus       329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~acl----p~~cF~TCSsD~TI  404 (1080)
T KOG1408|consen  329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACL----PRGCFTTCSSDGTI  404 (1080)
T ss_pred             EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccC----CccceeEecCCCcE
Confidence            4567888999999999999999999864333  344568999999998877221  111111    13459999999999


Q ss_pred             EEecC-C----ceee----------------------------------eccCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784          191 RLWWK-G----SCQR----------------------------------CFKGHNGPVSTLSDKLLGDGSGKILASGGED  231 (501)
Q Consensus       191 ~vwd~-~----~~~~----------------------------------~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d  231 (501)
                      ++||. +    ...+                                  ..-+..-.+.+++.+    |+|++|++|..-
T Consensus       405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS----p~gqhLAsGDr~  480 (1080)
T KOG1408|consen  405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS----PDGQHLASGDRG  480 (1080)
T ss_pred             EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC----CCcceecccCcc
Confidence            99981 1    1100                                  000123468899997    899999999999


Q ss_pred             CcEEEEeccCCCccccccceeeccCCCCceeEEEEeec--CCeEEEEEeCCCeEEEEECCCCccccceecccce-ecCCC
Q 010784          232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH--KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGV  308 (501)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~  308 (501)
                      |+++|+++...+      ....+..|...|.|+.++..  ..++|++++.|..|+|||+...-.+     +... .+...
T Consensus       481 GnlrVy~Lq~l~------~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l-----~qtld~HSss  549 (1080)
T KOG1408|consen  481 GNLRVYDLQELE------YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL-----VQTLDGHSSS  549 (1080)
T ss_pred             CceEEEEehhhh------hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch-----hhhhcccccc
Confidence            999999999876      47788899999999999854  3568999999999999999765322     2222 33445


Q ss_pred             ceeeecCCC---eEEEEeCC-cEEEEEcCC-CceEeeecc-----CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCC
Q 010784          309 PVDMKCHES---MLYIASGS-SVVTIDLRT-MQKVMTPAI-----CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQ  377 (501)
Q Consensus       309 ~~~~~~~~~---~~~~~~~~-~i~~~d~~~-~~~~~~~~~-----~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~  377 (501)
                      +.++.|...   ...+.+|. ....|+... ......+..     ....++.++..|..+++++++.|+ |+|||+.+++
T Consensus       550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK  629 (1080)
T KOG1408|consen  550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK  629 (1080)
T ss_pred             eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence            555554332   23444443 333344322 111111211     246789999999999999999999 9999999988


Q ss_pred             CCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784          378 DAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA  456 (501)
Q Consensus       378 ~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  456 (501)
                      ..   +..+.-.+|.+....+..+|. -++++...|.++.++|+.+|+++.++     .+|...|+++.|.+|.++|++.
T Consensus       630 q~---k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-----~GHsE~VTG~kF~nDCkHlISv  701 (1080)
T KOG1408|consen  630 QV---KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-----TGHSEAVTGVKFLNDCKHLISV  701 (1080)
T ss_pred             ee---eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-----cCcchheeeeeecccchhheee
Confidence            76   222233457788889999999 88888889999999999999999999     6788999999999999999999


Q ss_pred             ecCCCceEEEeecc
Q 010784          457 SYGEPGLLQFRDFS  470 (501)
Q Consensus       457 ~~d~~g~i~~w~~~  470 (501)
                      +  .||+|.+|.+.
T Consensus       702 s--gDgCIFvW~lp  713 (1080)
T KOG1408|consen  702 S--GDGCIFVWKLP  713 (1080)
T ss_pred             c--CCceEEEEECc
Confidence            9  66999999965

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=1.5e-27  Score=196.65  Aligned_cols=302  Identities=16%  Similarity=0.243  Sum_probs=227.3

Q ss_pred             EEecCCCCceEEeeC-CcEEEeecCCeeeEEEEeccccc-----------cc---ceecccCCcceeEEEeeccCcCccc
Q 010784          106 FYSVAKPHDHILLDN-NDIFSTQGSSIQNIKIDNFLSES-----------YY---RATLSDHKARITCMRLFPLHETSLF  170 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~-----------~~---~~~~~~h~~~V~~~~~~~~~~~~~~  170 (501)
                      ...|...|+++.+++ .|+|+++|+.||.|.|||++...           .+   ...-.+|+-.|.++.|.|.      
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~------  112 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI------  112 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee------
Confidence            446778899999995 78999999999999999987531           00   1122468889999999996      


Q ss_pred             ccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784          171 RSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       171 ~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  248 (501)
                            |...|.+++.|.+++|||  +.+....|+ .++.|.+-+++|... .-.++++|..|-.|++.|+.++.     
T Consensus       113 ------DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~-sHcLiA~gtr~~~VrLCDi~SGs-----  179 (397)
T KOG4283|consen  113 ------DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAM-SHCLIAAGTRDVQVRLCDIASGS-----  179 (397)
T ss_pred             ------cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhh-cceEEEEecCCCcEEEEeccCCc-----
Confidence                  788999999999999999  334444454 466777777764321 23578888899999999999987     


Q ss_pred             cceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEE
Q 010784          249 ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVV  328 (501)
Q Consensus       249 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  328 (501)
                       +.+.+.+|.+.|.++.|+|...-.|++|+.||.|++||++...                                +...
T Consensus       180 -~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras--------------------------------gcf~  226 (397)
T KOG4283|consen  180 -FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS--------------------------------GCFR  226 (397)
T ss_pred             -ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc--------------------------------ceeE
Confidence             5899999999999999999888899999999999999998642                                1233


Q ss_pred             EEEcCCCce---EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc---CcccCeEEEEec
Q 010784          329 TIDLRTMQK---VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD---GHVGSVTQLHMD  401 (501)
Q Consensus       329 ~~d~~~~~~---~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~  401 (501)
                      +.|..+++.   +..-..|.+.+.+++|+.++.++++.+.|. +++|+..+++...  ++.....   ...-.+. +. +
T Consensus       227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl--~~~g~~~~n~~~~~~~~-~~-~  302 (397)
T KOG4283|consen  227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL--REFGPIIHNQTTSFAVH-IQ-S  302 (397)
T ss_pred             EeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc--cccccccccccccceEE-Ee-e
Confidence            344433322   223446899999999999999999988666 9999999987541  1111110   0011111 22 2


Q ss_pred             CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          402 PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       402 ~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      -+ ..++.--.++.+.++++-++..++.+     ..|...+.+.++-|+-+...+|.  -|+.|..|...
T Consensus       303 ~~s~vfv~~p~~~~lall~~~sgs~ir~l-----~~h~k~i~c~~~~~~fq~~~tg~--~d~ni~~w~p~  365 (397)
T KOG4283|consen  303 MDSDVFVLFPNDGSLALLNLLEGSFVRRL-----STHLKRINCAAYRPDFEQCFTGD--MNGNIYMWSPA  365 (397)
T ss_pred             cccceEEEEecCCeEEEEEccCceEEEee-----ecccceeeEEeecCchhhhhccc--cCCcccccccc
Confidence            22 33333346799999999999999999     45667899999999999999998  66999999873

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=3.6e-27  Score=224.86  Aligned_cols=247  Identities=16%  Similarity=0.214  Sum_probs=183.1

Q ss_pred             ecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc-------
Q 010784          127 QGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS-------  197 (501)
Q Consensus       127 ~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~-------  197 (501)
                      .|+.++.+++|+... ...+..+.+|.+.|.+++|+|.            ++++|++|+.||+|+|||  .+.       
T Consensus        49 gGG~~gvI~L~~~~r-~~~v~~L~gH~~~V~~lafsP~------------~~~lLASgS~DgtIrIWDi~t~~~~~~~i~  115 (568)
T PTZ00420         49 GGGLIGAIRLENQMR-KPPVIKLKGHTSSILDLQFNPC------------FSEILASGSEDLTIRVWEIPHNDESVKEIK  115 (568)
T ss_pred             CCCceeEEEeeecCC-CceEEEEcCCCCCEEEEEEcCC------------CCCEEEEEeCCCeEEEEECCCCCccccccc
Confidence            477899999999877 3678889999999999999993            378999999999999999  221       


Q ss_pred             -eeeeccCCCCceEEEEeeecCCCCCC-EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784          198 -CQRCFKGHNGPVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV  275 (501)
Q Consensus       198 -~~~~~~~h~~~v~~l~~s~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  275 (501)
                       .+..+.+|...|.+++|+    |++. +|++|+.|++|++||+.++..      ...+. |...|.+++|++ ++.+|+
T Consensus       116 ~p~~~L~gH~~~V~sVaf~----P~g~~iLaSgS~DgtIrIWDl~tg~~------~~~i~-~~~~V~Slswsp-dG~lLa  183 (568)
T PTZ00420        116 DPQCILKGHKKKISIIDWN----PMNYYIMCSSGFDSFVNIWDIENEKR------AFQIN-MPKKLSSLKWNI-KGNLLS  183 (568)
T ss_pred             cceEEeecCCCcEEEEEEC----CCCCeEEEEEeCCCeEEEEECCCCcE------EEEEe-cCCcEEEEEECC-CCCEEE
Confidence             234678899999999997    6665 467999999999999998763      44444 567899999998 788999


Q ss_pred             EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEE-----
Q 010784          276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHS-----  350 (501)
Q Consensus       276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~-----  350 (501)
                      +++.|+.|++||+++++.                                            +..+.+|.+.+.+     
T Consensus       184 t~s~D~~IrIwD~Rsg~~--------------------------------------------i~tl~gH~g~~~s~~v~~  219 (568)
T PTZ00420        184 GTCVGKHMHIIDPRKQEI--------------------------------------------ASSFHIHDGGKNTKNIWI  219 (568)
T ss_pred             EEecCCEEEEEECCCCcE--------------------------------------------EEEEecccCCceeEEEEe
Confidence            999999999999998743                                            2344556554332     


Q ss_pred             EEEcCCCcEEEEEcCC----c-EEEEecCCCCCCCCCCCcccc--cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784          351 FSIMPSKSLICTGGIG----K-AMTWDIRRSQDAVKPQPMAEL--DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       351 v~~~~~~~~l~~~~~d----~-i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      ..|++++.+|++++.+    + |+|||+++...     ++..+  ..+.+.+......++ .++++|+.|+.|++|++..
T Consensus       220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-----pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-----ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-----ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence            3456888888876633    4 99999996432     23333  233333333333444 7888889999999999987


Q ss_pred             cccccccccCCCCCCCcceeeeEeecccc
Q 010784          423 GMLANSLLCNYPEEADISTGCSAMAVSGC  451 (501)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  451 (501)
                      +. +..+..   -.+..++.+++|.|...
T Consensus       295 ~~-~~~l~~---~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        295 GS-IRKVNE---YKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             Cc-EEeecc---cccCCCccceEEccccc
Confidence            64 333321   22456788899999743

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5.5e-28  Score=220.95  Aligned_cols=237  Identities=22%  Similarity=0.263  Sum_probs=204.2

Q ss_pred             CCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc-CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD-HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      ...|+++.++++|.+||.|..+|.|.|||..+. +.+..+.+ |...|-+++|..               ..+.+|+.||
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-k~~~~~~~~h~~rvg~laW~~---------------~~lssGsr~~  280 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-KKTRTLRGSHASRVGSLAWNS---------------SVLSSGSRDG  280 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhc-cccccccCCcCceeEEEeccC---------------ceEEEecCCC
Confidence            456999999999999999999999999999984 77778888 999999999964               8999999999


Q ss_pred             ceEEec--CC-ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784          189 SIRLWW--KG-SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS  265 (501)
Q Consensus       189 ~i~vwd--~~-~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  265 (501)
                      .|..+|  .. ....++.+|...|..+.|+    +++.++++|+.|+.+.|||.....      +...+..|.+.|..++
T Consensus       281 ~I~~~dvR~~~~~~~~~~~H~qeVCgLkws----~d~~~lASGgnDN~~~Iwd~~~~~------p~~~~~~H~aAVKA~a  350 (484)
T KOG0305|consen  281 KILNHDVRISQHVVSTLQGHRQEVCGLKWS----PDGNQLASGGNDNVVFIWDGLSPE------PKFTFTEHTAAVKALA  350 (484)
T ss_pred             cEEEEEEecchhhhhhhhcccceeeeeEEC----CCCCeeccCCCccceEeccCCCcc------ccEEEeccceeeeEee
Confidence            999999  33 3333588999999999997    899999999999999999996654      5788899999999999


Q ss_pred             EeecCCeEEEEEe--CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784          266 VAGHKSFLLVTIS--KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       266 ~~~~~~~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  343 (501)
                      |+|....+||+|+  .|+.|++||..+++.+....                                             
T Consensus       351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd---------------------------------------------  385 (484)
T KOG0305|consen  351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD---------------------------------------------  385 (484)
T ss_pred             eCCCccCceEEcCCCcccEEEEEEcCCCcEecccc---------------------------------------------
Confidence            9999899999975  69999999999886543221                                             


Q ss_pred             CCCcEEEEEEcCCCcEEEEE-c-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEe
Q 010784          344 CKPILHSFSIMPSKSLICTG-G-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWE  419 (501)
Q Consensus       344 ~~~~v~~v~~~~~~~~l~~~-~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd  419 (501)
                      ....|.++.|++..+-|+++ + ... |.||+..+.+.+      ..+.+|...|..++++|+ ..+++|+.|.++++|+
T Consensus       386 tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~------~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  386 TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV------AELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee------eeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence            26789999999987555544 3 444 999999986554      899999999999999999 8888889999999999


Q ss_pred             CCCc
Q 010784          420 TDTG  423 (501)
Q Consensus       420 ~~~~  423 (501)
                      +-..
T Consensus       460 ~f~~  463 (484)
T KOG0305|consen  460 LFDE  463 (484)
T ss_pred             ccCC
Confidence            9764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=3e-28  Score=202.10  Aligned_cols=278  Identities=17%  Similarity=0.228  Sum_probs=208.7

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCC--------------------ceeeecc
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKG--------------------SCQRCFK  203 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~--------------------~~~~~~~  203 (501)
                      .....+..|++++.+.+|++             ||.++++|+.|..|+|.|..                    ..++++.
T Consensus       103 yEt~ylt~HK~~cR~aafs~-------------DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY  169 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSP-------------DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY  169 (430)
T ss_pred             cceEEEeecccceeeeeeCC-------------CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh
Confidence            34456788999999999999             89999999999999999821                    2356788


Q ss_pred             CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeE
Q 010784          204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV  283 (501)
Q Consensus       204 ~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v  283 (501)
                      .|..+|+++.|+    |...+|++|+.|++|++||+.....    +..........+|.+|.|+| .+.+++.|..-..+
T Consensus       170 DH~devn~l~FH----Pre~ILiS~srD~tvKlFDfsK~sa----KrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~  240 (430)
T KOG0640|consen  170 DHVDEVNDLDFH----PRETILISGSRDNTVKLFDFSKTSA----KRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTL  240 (430)
T ss_pred             hccCcccceeec----chhheEEeccCCCeEEEEecccHHH----HHHHHHhhccceeeeEeecC-CCceEEEecCCCce
Confidence            899999999998    8899999999999999999976432    01112223567899999998 78899999999999


Q ss_pred             EEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784          284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG  363 (501)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  363 (501)
                      ++||+++.++-..-                                         ..-.+|.+.|+++.+++.+++.++|
T Consensus       241 rlYdv~T~Qcfvsa-----------------------------------------nPd~qht~ai~~V~Ys~t~~lYvTa  279 (430)
T KOG0640|consen  241 RLYDVNTYQCFVSA-----------------------------------------NPDDQHTGAITQVRYSSTGSLYVTA  279 (430)
T ss_pred             eEEeccceeEeeec-----------------------------------------CcccccccceeEEEecCCccEEEEe
Confidence            99999987542110                                         0113488999999999999999999


Q ss_pred             cCCc-EEEEecCCCCCCCCCCCccccc-Ccc-cCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCc
Q 010784          364 GIGK-AMTWDIRRSQDAVKPQPMAELD-GHV-GSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADI  439 (501)
Q Consensus       364 ~~d~-i~iwd~~~~~~~~~~~~~~~~~-~h~-~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  439 (501)
                      +.|+ |++||--+.+++      .++. .|. ..|.+..|..+ +++.+.+.|..+++|.+.+++++.++.+....+...
T Consensus       280 SkDG~IklwDGVS~rCv------~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~  353 (430)
T KOG0640|consen  280 SKDGAIKLWDGVSNRCV------RTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK  353 (430)
T ss_pred             ccCCcEEeeccccHHHH------HHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh
Confidence            9999 999999887665      6654 344 47899999999 888888899999999999999999886543222222


Q ss_pred             ceeeeEeeccccEEEEeec--------C-------------CCceEEEeeccCCccceeecCCCCceeeecc
Q 010784          440 STGCSAMAVSGCRIVTASY--------G-------------EPGLLQFRDFSNATCPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       440 ~v~~~~~s~~g~~l~s~~~--------d-------------~~g~i~~w~~~~~~~~~~s~~~d~~~~~w~~  490 (501)
                      .-+...|+....+++.-..        |             ++|.++..--++....+.+++.|...|+|--
T Consensus       354 ~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  354 HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            2233344444444443221        1             3344444444455555678888888898853

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.7e-29  Score=211.15  Aligned_cols=261  Identities=15%  Similarity=0.230  Sum_probs=209.8

Q ss_pred             eeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEE
Q 010784          199 QRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTI  277 (501)
Q Consensus       199 ~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~  277 (501)
                      +..+.+|...|.|++=+    |.. ..+++|+.||.|++||+....      +..++..|.+.|..|++..   ..++++
T Consensus        59 v~~L~gHrdGV~~lakh----p~~ls~~aSGs~DG~VkiWnlsqR~------~~~~f~AH~G~V~Gi~v~~---~~~~tv  125 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKH----PNKLSTVASGSCDGEVKIWNLSQRE------CIRTFKAHEGLVRGICVTQ---TSFFTV  125 (433)
T ss_pred             hhhccccccccchhhcC----cchhhhhhccccCceEEEEehhhhh------hhheeecccCceeeEEecc---cceEEe
Confidence            34567899999999976    443 689999999999999999876      5899999999999999974   578999


Q ss_pred             eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe-EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC
Q 010784          278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS  356 (501)
Q Consensus       278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~  356 (501)
                      +.|.+|+.|-+...       ..+.....+....++-.... .+..+|..|.+||.+...++..+.-..+.|.++.|+|.
T Consensus       126 gdDKtvK~wk~~~~-------p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpv  198 (433)
T KOG0268|consen  126 GDDKTVKQWKIDGP-------PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPV  198 (433)
T ss_pred             cCCcceeeeeccCC-------cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCC
Confidence            99999999998763       23333444455555555444 44445569999999999999999888899999999997


Q ss_pred             C-cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc-ccccccccC
Q 010784          357 K-SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG-MLANSLLCN  432 (501)
Q Consensus       357 ~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~  432 (501)
                      . .+|++++.|+ |.+||++....+      +.+.- ...-+.|+|+|. ..+++|+.|..++.||++.. +++...   
T Consensus       199 ETsILas~~sDrsIvLyD~R~~~Pl------~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~---  268 (433)
T KOG0268|consen  199 ETSILASCASDRSIVLYDLRQASPL------KKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH---  268 (433)
T ss_pred             cchheeeeccCCceEEEecccCCcc------ceeee-eccccceecCccccceeeccccccceehhhhhhcccchhh---
Confidence            5 4566666777 999999997765      33321 344578999999 77778899999999999874 445555   


Q ss_pred             CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec----------------------cCCccceeecCCCCceeeecc
Q 010784          433 YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF----------------------SNATCPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       433 ~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~----------------------~~~~~~~~s~~~d~~~~~w~~  490 (501)
                        .+|.++|.++.|||.|+-+++||+|  .+|++|.+                      +.+.+.+.|||+|+.+++|.-
T Consensus       269 --~dhvsAV~dVdfsptG~EfvsgsyD--ksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  269 --KDHVSAVMDVDFSPTGQEFVSGSYD--KSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             --cccceeEEEeccCCCcchhcccccc--ceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence              6789999999999999999999977  99999984                      456677889999999999987


Q ss_pred             cCC
Q 010784          491 QCY  493 (501)
Q Consensus       491 ~~~  493 (501)
                      ...
T Consensus       345 ~As  347 (433)
T KOG0268|consen  345 KAS  347 (433)
T ss_pred             chh
Confidence            543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=5.3e-27  Score=219.00  Aligned_cols=354  Identities=13%  Similarity=0.173  Sum_probs=273.5

Q ss_pred             eeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784          103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV  182 (501)
Q Consensus       103 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (501)
                      ...+......|+++.-+|--..+|.|..+|.|.+++++.+ +.+.+++...+.|++++|..+|            ...++
T Consensus       195 v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d-kil~sFk~d~g~VtslSFrtDG------------~p~la  261 (910)
T KOG1539|consen  195 VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD-KILMSFKQDWGRVTSLSFRTDG------------NPLLA  261 (910)
T ss_pred             EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC-cEEEEEEccccceeEEEeccCC------------CeeEE
Confidence            3456667778999999999999999999999999999985 8888887667999999999842            35778


Q ss_pred             EeeCCCceEEec-CCc-eeee-ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          183 TSSCDHSIRLWW-KGS-CQRC-FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       183 s~~~dg~i~vwd-~~~-~~~~-~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      +|+..|.+.+|| .++ .+.. ...|.+.|....|.    +....+++++.|..+++|-.+++..  ..+.+..-.||..
T Consensus       262 s~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl----~~epVl~ta~~DnSlk~~vfD~~dg--~pR~LR~R~GHs~  335 (910)
T KOG1539|consen  262 SGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL----PGEPVLVTAGADNSLKVWVFDSGDG--VPRLLRSRGGHSA  335 (910)
T ss_pred             eccCCceEEEEEcCCCeeeeeeeccccCCcccceec----CCCceEeeccCCCceeEEEeeCCCC--cchheeeccCCCC
Confidence            888889999999 333 3333 34798999999997    7788999999999999998776543  2235666779999


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec----------------------------------------
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC----------------------------------------  299 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----------------------------------------  299 (501)
                      +..+|+|....+..+.+++.|++++.+++.....-++...                                        
T Consensus       336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~  415 (910)
T KOG1539|consen  336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI  415 (910)
T ss_pred             CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence            9999999977889999999999888887642211000000                                        


Q ss_pred             ------------------c--cc--------eecCCCceeeecCCCeEEEEe-CCcEEEEEcCCCceEeee---ccCCCc
Q 010784          300 ------------------V--GM--------TSVPGVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVMTP---AICKPI  347 (501)
Q Consensus       300 ------------------~--~~--------~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~---~~~~~~  347 (501)
                                        .  +.        ........++++.++..++.. .+.|.+|+++++-....+   ..|.++
T Consensus       416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~  495 (910)
T KOG1539|consen  416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE  495 (910)
T ss_pred             EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence                              0  00        001112233344445555543 458999999999988888   589999


Q ss_pred             EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784          348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML  425 (501)
Q Consensus       348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~  425 (501)
                      |++++...-++.+++++.+| +.+||..+....      ..+.- ...+.++..+.. .+++.+..|-.|+++|+.+.+.
T Consensus       496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~------~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv  568 (910)
T KOG1539|consen  496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK------KSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV  568 (910)
T ss_pred             eeEEEecCCCceEEEccCcceEEEEecCCccee------eeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence            99999998899999999888 999999986432      44443 456778888887 7888888999999999999999


Q ss_pred             ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc--------------------CCccceeecCCC-Cc
Q 010784          426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS--------------------NATCPVLKHEVQ-ND  484 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~--------------------~~~~~~~s~~~d-~~  484 (501)
                      .+.|     .+|.+.|+.++|||||++|++++  .|++|++||+.                    +.+..+++...| .-
T Consensus       569 vR~f-----~gh~nritd~~FS~DgrWlisas--mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~g  641 (910)
T KOG1539|consen  569 VREF-----WGHGNRITDMTFSPDGRWLISAS--MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNG  641 (910)
T ss_pred             hHHh-----hccccceeeeEeCCCCcEEEEee--cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCce
Confidence            9999     67899999999999999999999  66999999954                    444556655544 55


Q ss_pred             eeeec
Q 010784          485 SKFWG  489 (501)
Q Consensus       485 ~~~w~  489 (501)
                      +.+|.
T Consensus       642 IylWs  646 (910)
T KOG1539|consen  642 IYLWS  646 (910)
T ss_pred             EEEEE
Confidence            77774

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.1e-28  Score=193.34  Aligned_cols=259  Identities=20%  Similarity=0.220  Sum_probs=204.1

Q ss_pred             ecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CC--ceeeeccCCCCceEEEEeeecCCCCC
Q 010784          148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KG--SCQRCFKGHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       148 ~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~--~~~~~~~~h~~~v~~l~~s~~~~~~~  222 (501)
                      .-..|.+.|..+...-             -|.+|+|++.|++|+|+.   .+  +.+.++.+|.++|..++|.  .+.-|
T Consensus         6 idt~H~D~IHda~lDy-------------ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa--hPk~G   70 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDY-------------YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA--HPKFG   70 (299)
T ss_pred             hhhhhhhhhhHhhhhh-------------hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec--ccccC
Confidence            3457888888877665             689999999999999997   33  6778999999999999995  22468


Q ss_pred             CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      .+|++++.||.|.||.-.++.    +........|...|++++|.|++ +-.|++++.||.|.|.+.+....-       
T Consensus        71 ~iLAScsYDgkVIiWke~~g~----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w-------  139 (299)
T KOG1332|consen   71 TILASCSYDGKVIIWKEENGR----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW-------  139 (299)
T ss_pred             cEeeEeecCceEEEEecCCCc----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc-------
Confidence            999999999999999988764    33456677899999999999975 668899999999999998764110       


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC---C-----------cEEEEEcCCc
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS---K-----------SLICTGGIGK  367 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~-----------~~l~~~~~d~  367 (501)
                                                        ........|.-.|++++|.|-   |           +.|++|+.|+
T Consensus       140 ----------------------------------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn  185 (299)
T KOG1332|consen  140 ----------------------------------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN  185 (299)
T ss_pred             ----------------------------------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc
Confidence                                              001223457888999999885   4           5699999888


Q ss_pred             -EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-----eEEEEecCCCcEEEEeCCCc--ccccccccCCCCCCCc
Q 010784          368 -AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-----KIVTGGRDDLRINIWETDTG--MLANSLLCNYPEEADI  439 (501)
Q Consensus       368 -i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~l~~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~  439 (501)
                       |+||+..+.+    ...-.++.+|.+.|..++|.|.     ..++++|.||++.||-.+..  .-..++.    .....
T Consensus       186 ~VkiW~~~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll----~~f~~  257 (299)
T KOG1332|consen  186 LVKIWKFDSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL----EEFPD  257 (299)
T ss_pred             ceeeeecCCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc----ccCCc
Confidence             9999999864    3334669999999999999996     68999999999999987631  1111221    22356


Q ss_pred             ceeeeEeeccccEEEEeecCCCceEEEeeccCCccce
Q 010784          440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPV  476 (501)
Q Consensus       440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~  476 (501)
                      .+..+.||..|..|++++  .|+.|.+|.-+..++..
T Consensus       258 ~~w~vSWS~sGn~LaVs~--GdNkvtlwke~~~Gkw~  292 (299)
T KOG1332|consen  258 VVWRVSWSLSGNILAVSG--GDNKVTLWKENVDGKWE  292 (299)
T ss_pred             ceEEEEEeccccEEEEec--CCcEEEEEEeCCCCcEE
Confidence            799999999999999998  66999999876665543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=1.5e-27  Score=218.35  Aligned_cols=276  Identities=17%  Similarity=0.256  Sum_probs=220.8

Q ss_pred             eeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccc-cceecccCCcceeE-EEeeccCcCcccccCCCCcCcE
Q 010784          103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY-YRATLSDHKARITC-MRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       103 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~-~~~~~~~h~~~V~~-~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      ..+...|...|..++..+ +..+++++.|+++++|+-..+.. ..+.+.+|.+-|.+ ++|.+.            ++..
T Consensus         7 s~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~------------~~~~   73 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES------------DKGR   73 (745)
T ss_pred             EEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc------------cCcc
Confidence            345556666676666554 45889999999999999864322 23567889998887 888762            6778


Q ss_pred             EEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784          181 LVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE  258 (501)
Q Consensus       181 l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  258 (501)
                      +++|+.|++|.+|.  ....+.++++|+..|.|+...    .++. ++|||.|.++++|....        +...+.+|+
T Consensus        74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~----~~~~-~iSgSWD~TakvW~~~~--------l~~~l~gH~  140 (745)
T KOG0301|consen   74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG----EDGT-LISGSWDSTAKVWRIGE--------LVYSLQGHT  140 (745)
T ss_pred             eEeecccceEEEEecCCCCchhhhhccccceeeeecC----CcCc-eEecccccceEEecchh--------hhcccCCcc
Confidence            99999999999998  777889999999999999863    4444 99999999999998865        456699999


Q ss_pred             CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784          259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV  338 (501)
Q Consensus       259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  338 (501)
                      ..|+++...|. . .++|||.|.+|++|.-.+                                              .+
T Consensus       141 asVWAv~~l~e-~-~~vTgsaDKtIklWk~~~----------------------------------------------~l  172 (745)
T KOG0301|consen  141 ASVWAVASLPE-N-TYVTGSADKTIKLWKGGT----------------------------------------------LL  172 (745)
T ss_pred             hheeeeeecCC-C-cEEeccCcceeeeccCCc----------------------------------------------hh
Confidence            99999999873 3 899999999999997532                                              34


Q ss_pred             eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784          339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN  416 (501)
Q Consensus       339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~  416 (501)
                      +++.+|.+.|..+++-+++. +++++.|+ |++|++ +++.      +.++.+|+.-|+++....+ .++++++.|++++
T Consensus       173 ~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~------l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr  244 (745)
T KOG0301|consen  173 KTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEV------LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR  244 (745)
T ss_pred             hhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCce------eeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence            67889999999999987764 55666666 999999 4444      4889999999999995555 8888888999999


Q ss_pred             EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ||+..  ++.+.+     ..+...|.++.+-++|..+ +|+  .||.|+||...
T Consensus       245 iW~~~--e~~q~I-----~lPttsiWsa~~L~NgDIv-vg~--SDG~VrVfT~~  288 (745)
T KOG0301|consen  245 IWKKD--ECVQVI-----TLPTTSIWSAKVLLNGDIV-VGG--SDGRVRVFTVD  288 (745)
T ss_pred             EeecC--ceEEEE-----ecCccceEEEEEeeCCCEE-Eec--cCceEEEEEec
Confidence            99986  677777     3345688999888888655 455  45999999865

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.6e-28  Score=211.73  Aligned_cols=237  Identities=18%  Similarity=0.271  Sum_probs=198.0

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      .+.++.|-.||.++|.|+..|.|+|+|..+ ...++.+.+|+.+|..+.|+|.            ++..|++|+.|+.++
T Consensus        70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~------------d~t~l~s~sDd~v~k  136 (487)
T KOG0310|consen   70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQ------------DNTMLVSGSDDKVVK  136 (487)
T ss_pred             ceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEeccc------------CCeEEEecCCCceEE
Confidence            478899999999999999999999999766 5788999999999999999996            788999999999999


Q ss_pred             Eec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784          192 LWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH  269 (501)
Q Consensus       192 vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  269 (501)
                      +||  +...+..+.+|+..|.|.+|+|   .++..++||+.||.|++||.+....     .+..+ .|..+|..+.+.| 
T Consensus       137 ~~d~s~a~v~~~l~~htDYVR~g~~~~---~~~hivvtGsYDg~vrl~DtR~~~~-----~v~el-nhg~pVe~vl~lp-  206 (487)
T KOG0310|consen  137 YWDLSTAYVQAELSGHTDYVRCGDISP---ANDHIVVTGSYDGKVRLWDTRSLTS-----RVVEL-NHGCPVESVLALP-  206 (487)
T ss_pred             EEEcCCcEEEEEecCCcceeEeecccc---CCCeEEEecCCCceEEEEEeccCCc-----eeEEe-cCCCceeeEEEcC-
Confidence            999  4444557899999999999983   5667999999999999999998743     34444 5999999999998 


Q ss_pred             CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE
Q 010784          270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH  349 (501)
Q Consensus       270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~  349 (501)
                      .+..+++++. ..|++||+.++.                                           +.+..+..|...|+
T Consensus       207 sgs~iasAgG-n~vkVWDl~~G~-------------------------------------------qll~~~~~H~KtVT  242 (487)
T KOG0310|consen  207 SGSLIASAGG-NSVKVWDLTTGG-------------------------------------------QLLTSMFNHNKTVT  242 (487)
T ss_pred             CCCEEEEcCC-CeEEEEEecCCc-------------------------------------------eehhhhhcccceEE
Confidence            6778888775 579999998663                                           22233445899999


Q ss_pred             EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784          350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      |+.+..++..|++|+-|+ +++||+.+.+.+      ..+. ..++|.+++.+|+ ..++.|-.||.+.+-+...
T Consensus       243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv------~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVV------HSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             EEEeecCCceEeecccccceEEEEccceEEE------Eeee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence            999999999999999888 999998775543      5554 3789999999998 7777777999888775443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=8.9e-29  Score=212.91  Aligned_cols=272  Identities=21%  Similarity=0.265  Sum_probs=219.2

Q ss_pred             ecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      .|...++.+.|-++...+++|+.|..|++|+...++ ..+.+|.|-.+.|+.++|.+             ++.++++++.
T Consensus       173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-------------~~~~~iAas~  239 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-------------DNKHVIAASN  239 (459)
T ss_pred             ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-------------CCceEEeecC
Confidence            355669999999999999999999999999987642 37788899999999999998             7899999999


Q ss_pred             CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          187 DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       187 dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      |+.+++|+  ..+...++.+|++.|+++.|.    .....+++|+.|.+|+.||+....      +..++. ....+..|
T Consensus       240 d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~----~~~~~vVsgs~DRtiK~WDl~k~~------C~kt~l-~~S~cnDI  308 (459)
T KOG0288|consen  240 DKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK----LSHSRVVSGSADRTIKLWDLQKAY------CSKTVL-PGSQCNDI  308 (459)
T ss_pred             CCceeeeeccchhhhhhhcccccceeeehhh----ccccceeeccccchhhhhhhhhhh------eecccc-ccccccce
Confidence            99999998  778889999999999999995    444459999999999999999865      344433 23445566


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe---CCcEEEEEcCCCceEeee
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS---GSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~  341 (501)
                      ...   ...+++|..|++|++||+++......      ....+.+.++..+.++.-+.+   ++.+.++|+++.+....+
T Consensus       309 ~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~s------v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~  379 (459)
T KOG0288|consen  309 VCS---ISDVISGHFDKKVRFWDIRSADKTRS------VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF  379 (459)
T ss_pred             Eec---ceeeeecccccceEEEeccCCceeeE------eecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence            654   44789999999999999999865443      355666777766655544333   248999999999988777


Q ss_pred             ccC----CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcc--cCeEEEEecCC-eEEEEecCCC
Q 010784          342 AIC----KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHV--GSVTQLHMDPY-KIVTGGRDDL  413 (501)
Q Consensus       342 ~~~----~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~-~~l~~gs~dg  413 (501)
                      ...    ....+.+.|||++.|+++|+.|+ |+||++.+++..      ..+....  ..|++++|+|. ..+++++.++
T Consensus       380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE------~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE------KVLSLSTSNAAITSLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE------EEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence            643    33478999999999999999999 999999998765      4443322  36999999999 7777778999


Q ss_pred             cEEEE
Q 010784          414 RINIW  418 (501)
Q Consensus       414 ~i~iw  418 (501)
                      .+.+|
T Consensus       454 ~v~lW  458 (459)
T KOG0288|consen  454 AVTLW  458 (459)
T ss_pred             ceEec
Confidence            99999

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=4.9e-27  Score=190.39  Aligned_cols=268  Identities=13%  Similarity=0.162  Sum_probs=221.9

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccce--ecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRA--TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      ..+..++.+++|+.+|..+++|+.|+++.+|+++.. +...  ...+|.+.|-.++|.|.            ..++|+++
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~------------~~d~~ata   83 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPK------------HPDLFATA   83 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCC------------CCcceEEe
Confidence            445566899999999999999999999999999875 4333  35789999999999985            67899999


Q ss_pred             eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784          185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      +.|.+|++||  .+++........+.|. +.|+    |+|++++.++.|..|.+.|.++.+.       ..-......+.
T Consensus        84 s~dk~ir~wd~r~~k~~~~i~~~~eni~-i~ws----p~g~~~~~~~kdD~it~id~r~~~~-------~~~~~~~~e~n  151 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSGKCTARIETKGENIN-ITWS----PDGEYIAVGNKDDRITFIDARTYKI-------VNEEQFKFEVN  151 (313)
T ss_pred             cCCceEEEEEeccCcEEEEeeccCcceE-EEEc----CCCCEEEEecCcccEEEEEecccce-------eehhcccceee
Confidence            9999999999  7888887765555554 5665    8999999999999999999988652       22233455677


Q ss_pred             EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC---cEEEEEcCCCceEe
Q 010784          263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS---SVVTIDLRTMQKVM  339 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~  339 (501)
                      -+.|+ .++++++.....|.|.|......+++..+.     .++...+++.++|++.++++|+   .+.+||+...-+++
T Consensus       152 e~~w~-~~nd~Fflt~GlG~v~ILsypsLkpv~si~-----AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R  225 (313)
T KOG1407|consen  152 EISWN-NSNDLFFLTNGLGCVEILSYPSLKPVQSIK-----AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER  225 (313)
T ss_pred             eeeec-CCCCEEEEecCCceEEEEeccccccccccc-----cCCcceEEEEECCCCceEeeccccceeeccChhHhhhhe
Confidence            78888 466777777778999999888766554433     5668899999999999999886   79999999999999


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD  412 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d  412 (501)
                      .+..+.-+|..+.|+.+|++||+|++|. |-|=+..++..+      .+++ +.++...++|+|. .+||-+..|
T Consensus       226 ~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~------~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  226 CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV------WEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE------EEee-ccCCceeEEecCCCceeeEEecC
Confidence            9999999999999999999999999999 999999998765      6665 5889999999999 666655443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.7e-27  Score=205.07  Aligned_cols=237  Identities=17%  Similarity=0.269  Sum_probs=201.6

Q ss_pred             cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784          154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED  231 (501)
Q Consensus       154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d  231 (501)
                      ..++++...|             ..+.+++|+.|..+.++|  .++.+..++||...|+.+.|+    ++...+++++.|
T Consensus       220 pgi~ald~~~-------------s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~----~~~~~v~~aSad  282 (506)
T KOG0289|consen  220 PGITALDIIP-------------SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFH----KDLDTVITASAD  282 (506)
T ss_pred             CCeeEEeecC-------------CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEec----cchhheeecCCc
Confidence            3577777776             568999999999999999  778889999999999999997    888999999999


Q ss_pred             CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee
Q 010784          232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD  311 (501)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  311 (501)
                      ..|+||......      .......|..+|+.+..+| .+.+|++++.||+..+.|++++..+...              
T Consensus       283 ~~i~vws~~~~s------~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~v--------------  341 (506)
T KOG0289|consen  283 EIIRVWSVPLSS------EPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVV--------------  341 (506)
T ss_pred             ceEEeecccccc------Cccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEE--------------
Confidence            999999988765      3667788999999999998 7889999999999999999988542110              


Q ss_pred             eecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC
Q 010784          312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG  390 (501)
Q Consensus       312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  390 (501)
                                                  .-....-.+++.+|+|||.+|.+|..|+ ++|||+.+....      ..|.+
T Consensus       342 ----------------------------s~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~------a~Fpg  387 (506)
T KOG0289|consen  342 ----------------------------SDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV------AKFPG  387 (506)
T ss_pred             ----------------------------eeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc------ccCCC
Confidence                                        0011123478999999999999999999 999999997655      89999


Q ss_pred             cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          391 HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       391 h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      |.++|..++|+.+ .++++++.|+.|++||++..+...++...    ....+.++.|.+.|++|+.++  ++-.|++++
T Consensus       388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~----~~~~v~s~~fD~SGt~L~~~g--~~l~Vy~~~  460 (506)
T KOG0289|consen  388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD----EKKEVNSLSFDQSGTYLGIAG--SDLQVYICK  460 (506)
T ss_pred             CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc----ccccceeEEEcCCCCeEEeec--ceeEEEEEe
Confidence            9999999999999 99999999999999999988888887532    234799999999999999998  446666655

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=9.4e-28  Score=212.24  Aligned_cols=282  Identities=15%  Similarity=0.162  Sum_probs=208.0

Q ss_pred             ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC--ceeeec----cCCCCceEEEEeeecC
Q 010784          146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG--SCQRCF----KGHNGPVSTLSDKLLG  218 (501)
Q Consensus       146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~--~~~~~~----~~h~~~v~~l~~s~~~  218 (501)
                      ...+++|+..|.++++.|             .|..|+||+.|.+|++|| .|  ...+.|    ......|+++.|+   
T Consensus       160 Ei~l~hgtk~Vsal~~Dp-------------~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys---  223 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDP-------------SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS---  223 (641)
T ss_pred             eEeccCCceEEEEeeecC-------------CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeec---
Confidence            345788999999999999             899999999999999999 22  122222    2345689999997   


Q ss_pred             CCCCCEEEEeeCCCcEEEEeccCCCc------cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784          219 DGSGKILASGGEDATVRLWSLSSSGK------RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS  292 (501)
Q Consensus       219 ~~~~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~  292 (501)
                       +.|..|++.+.....+++|-+....      ..-..-....++|...+++.+|+|.....|++++.||++++||+...+
T Consensus       224 -~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k  302 (641)
T KOG0772|consen  224 -VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK  302 (641)
T ss_pred             -CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence             6788888888888999999775432      001112334578999999999999889999999999999999998764


Q ss_pred             cccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEE
Q 010784          293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTW  371 (501)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iw  371 (501)
                      ...+                                ++..      ....+..-++++++|+++|.+||+|..|+ |.+|
T Consensus       303 ~q~q--------------------------------Vik~------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  303 SQLQ--------------------------------VIKT------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW  344 (641)
T ss_pred             hhee--------------------------------EEee------ccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence            2111                                0000      01112344678999999999999999999 9999


Q ss_pred             ecCCCCCCCCCCCcccccCccc--CeEEEEecCC-eEEEEecCCCcEEEEeCCCc-ccccccccCCCCCCCcceeeeEee
Q 010784          372 DIRRSQDAVKPQPMAELDGHVG--SVTQLHMDPY-KIVTGGRDDLRINIWETDTG-MLANSLLCNYPEEADISTGCSAMA  447 (501)
Q Consensus       372 d~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s  447 (501)
                      +..+....   ..+..-..|..  .|+||.|+++ ++|++-+.|+++++||+++. +++.+..+-   .....-+.++||
T Consensus       345 ~~~~~~v~---p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL---~t~~~~tdc~FS  418 (641)
T KOG0772|consen  345 DKGSRTVR---PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL---PTPFPGTDCCFS  418 (641)
T ss_pred             ecCCcccc---cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCC---CccCCCCccccC
Confidence            98654321   12233346766  8999999999 99999889999999999874 455555321   223456789999


Q ss_pred             ccccEEEEeecC----CCceEEEeec---------------------cCCccceeecCCCCceeee
Q 010784          448 VSGCRIVTASYG----EPGLLQFRDF---------------------SNATCPVLKHEVQNDSKFW  488 (501)
Q Consensus       448 ~~g~~l~s~~~d----~~g~i~~w~~---------------------~~~~~~~~s~~~d~~~~~w  488 (501)
                      |+.++|++|++-    ..|.+.+||-                     .+.-+.+..|+.||.++++
T Consensus       419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             CCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence            999999998763    4467888872                     2333556678888988886

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=1.2e-27  Score=218.84  Aligned_cols=261  Identities=19%  Similarity=0.289  Sum_probs=217.3

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCce---eeeccCCCCceEE-EEeeec
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSC---QRCFKGHNGPVST-LSDKLL  217 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~---~~~~~~h~~~v~~-l~~s~~  217 (501)
                      .++.+.+.||...|..+++.+              +..++++|.||++++|+ .++.   ...+.+|.+-|.+ +++-  
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~--------------~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~--   67 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTD--------------GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYA--   67 (745)
T ss_pred             ceeEEEeccCccchheeEecC--------------CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceec--
Confidence            466788999999999999875              67899999999999998 3332   2457778888877 7774  


Q ss_pred             CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784          218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  297 (501)
                       ..++..+++|+.|++|.+|.+.+..      +..++++|...|.+++... ++ .+++||.|.++++|-....      
T Consensus        68 -e~~~~~l~~g~~D~~i~v~~~~~~~------P~~~LkgH~snVC~ls~~~-~~-~~iSgSWD~TakvW~~~~l------  132 (745)
T KOG0301|consen   68 -ESDKGRLVVGGMDTTIIVFKLSQAE------PLYTLKGHKSNVCSLSIGE-DG-TLISGSWDSTAKVWRIGEL------  132 (745)
T ss_pred             -cccCcceEeecccceEEEEecCCCC------chhhhhccccceeeeecCC-cC-ceEecccccceEEecchhh------
Confidence             2455679999999999999999877      5899999999999998763 44 4999999999999986543      


Q ss_pred             ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCC
Q 010784          298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRS  376 (501)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~  376 (501)
                                                              ...+++|+..|.++..-|++ .+++|+.|+ |++|.-.+ 
T Consensus       133 ----------------------------------------~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~-  170 (745)
T KOG0301|consen  133 ----------------------------------------VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT-  170 (745)
T ss_pred             ----------------------------------------hcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc-
Confidence                                                    23467899999999999988 888899888 99998743 


Q ss_pred             CCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784          377 QDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT  455 (501)
Q Consensus       377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  455 (501)
                       .      +.+|.+|..-|..+++-++ .++.+ +.||.|++|++ +|+++.++     .+|.+-+.+++...++..+++
T Consensus       171 -~------l~tf~gHtD~VRgL~vl~~~~flSc-sNDg~Ir~w~~-~ge~l~~~-----~ghtn~vYsis~~~~~~~Ivs  236 (745)
T KOG0301|consen  171 -L------LKTFSGHTDCVRGLAVLDDSHFLSC-SNDGSIRLWDL-DGEVLLEM-----HGHTNFVYSISMALSDGLIVS  236 (745)
T ss_pred             -h------hhhhccchhheeeeEEecCCCeEee-cCCceEEEEec-cCceeeee-----eccceEEEEEEecCCCCeEEE
Confidence             2      4899999999999999999 55555 69999999998 78899888     678899999998888999999


Q ss_pred             eecCCCceEEEeeccC------------------CccceeecCCCCceeeecccC
Q 010784          456 ASYGEPGLLQFRDFSN------------------ATCPVLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       456 ~~~d~~g~i~~w~~~~------------------~~~~~~s~~~d~~~~~w~~~~  492 (501)
                      ++  +|+++++|+...                  ...-+++|++||.+++|....
T Consensus       237 ~g--EDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  237 TG--EDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             ec--CCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence            99  889999998441                  122367999999999998763

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1e-26  Score=221.85  Aligned_cols=230  Identities=18%  Similarity=0.232  Sum_probs=172.6

Q ss_pred             eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccc--cccceeeccCCC
Q 010784          184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRG--QQALKATLYGHE  258 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~  258 (501)
                      |+.++.|++|+  ....+..+.+|.+.|.+++|+    |+ +++|++|+.||+|++||+.++....  ...+...+.+|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafs----P~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~  125 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFN----PCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK  125 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEc----CCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence            67789999998  445677889999999999997    54 7899999999999999998643200  011345678899


Q ss_pred             CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784          259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV  338 (501)
Q Consensus       259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  338 (501)
                      ..|.+++|+|....++++++.|+.|++||+++++..                                            
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------------------------------------  161 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------------------------------------  161 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------------------------------------
Confidence            999999999965566789999999999999887421                                            


Q ss_pred             eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE-----EecCC-eEEEEecC
Q 010784          339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL-----HMDPY-KIVTGGRD  411 (501)
Q Consensus       339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-----~~~~~-~~l~~gs~  411 (501)
                      ..+. |...|.+++|+|+|.+|++++.|+ |+|||+++++.+      .++.+|.+.+...     .|+++ .++++++.
T Consensus       162 ~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i------~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~  234 (568)
T PTZ00420        162 FQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA------SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF  234 (568)
T ss_pred             EEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE------EEEecccCCceeEEEEeeeEcCCCCEEEEEEc
Confidence            1222 456799999999999999999888 999999997654      7788898765443     34567 55555445


Q ss_pred             C----CcEEEEeCCC-cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          412 D----LRINIWETDT-GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       412 d----g~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      |    +.|+|||+++ ++++..+..   ..+.+.+......++|.++++|+  .|+.|++|++..+.
T Consensus       235 d~~~~R~VkLWDlr~~~~pl~~~~l---d~~~~~L~p~~D~~tg~l~lsGk--GD~tIr~~e~~~~~  296 (568)
T PTZ00420        235 SKNNMREMKLWDLKNTTSALVTMSI---DNASAPLIPHYDESTGLIYLIGK--GDGNCRYYQHSLGS  296 (568)
T ss_pred             CCCCccEEEEEECCCCCCceEEEEe---cCCccceEEeeeCCCCCEEEEEE--CCCeEEEEEccCCc
Confidence            5    3799999995 556655522   11223333333455688899998  67999999998764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.4e-28  Score=219.59  Aligned_cols=239  Identities=22%  Similarity=0.289  Sum_probs=201.2

Q ss_pred             cCcEEEEeeCCCceEEec----CC----ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784          177 TENVLVTSSCDHSIRLWW----KG----SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd----~~----~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  248 (501)
                      .+++|+|||.||.|++|+    .+    ..+..+..|..-|+.+...    .+++.|+++|.|-+|++|+......    
T Consensus        36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~----~~~~tlIS~SsDtTVK~W~~~~~~~----  107 (735)
T KOG0308|consen   36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC----GNGKTLISASSDTTVKVWNAHKDNT----  107 (735)
T ss_pred             CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh----cCCCceEEecCCceEEEeecccCcc----
Confidence            678899999999999997    22    2466788899999999886    7888999999999999999987641    


Q ss_pred             cceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcc--ccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784          249 ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSA--VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS  326 (501)
Q Consensus       249 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (501)
                      -+..++..|...|.|+++...+..++++|+.|+.|.+||+.++..  +.....                           
T Consensus       108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~---------------------------  160 (735)
T KOG0308|consen  108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN---------------------------  160 (735)
T ss_pred             hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc---------------------------
Confidence            267889999999999999545788999999999999999998732  111110                           


Q ss_pred             EEEEEcCCCceEeeec-cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784          327 VVTIDLRTMQKVMTPA-ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-  403 (501)
Q Consensus       327 i~~~d~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-  403 (501)
                               .....+. ++...|++++.++.|..+++|+..+ +++||.++.+.+      ..+++|...|..+..+++ 
T Consensus       161 ---------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki------mkLrGHTdNVr~ll~~dDG  225 (735)
T KOG0308|consen  161 ---------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI------MKLRGHTDNVRVLLVNDDG  225 (735)
T ss_pred             ---------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce------eeeeccccceEEEEEcCCC
Confidence                     0111222 6789999999999999999999888 999999997765      889999999999999999 


Q ss_pred             eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          404 KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      .-+.++|.||+|++||+...+++.++     ..|...|.++..+|+-.++.+|+  .+|.|..=|+.+.
T Consensus       226 t~~ls~sSDgtIrlWdLgqQrCl~T~-----~vH~e~VWaL~~~~sf~~vYsG~--rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  226 TRLLSASSDGTIRLWDLGQQRCLATY-----IVHKEGVWALQSSPSFTHVYSGG--RDGNIYRTDLRNP  287 (735)
T ss_pred             CeEeecCCCceEEeeeccccceeeeE-----EeccCceEEEeeCCCcceEEecC--CCCcEEecccCCc
Confidence            67777789999999999999999999     56677799999999999999999  5699999887763

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-26  Score=193.26  Aligned_cols=241  Identities=22%  Similarity=0.320  Sum_probs=191.6

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ..+..|..++++++++  +.|+|+|+.|-+|+|||+.+ ...+..+..|.+.|+++.|.+..           ..+.|++
T Consensus        37 F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~ll~HagsitaL~F~~~~-----------S~shLlS  102 (362)
T KOG0294|consen   37 FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGILLSHAGSITALKFYPPL-----------SKSHLLS  102 (362)
T ss_pred             ccccccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhcceeccccceEEEEecCCc-----------chhheee
Confidence            4566788889999997  68999999999999999998 47778888999999999999831           2348999


Q ss_pred             eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                      |+.||.|.+|+  .-.++..+++|.+.|+.++.+    |.+++-++.+.|+.++.||+-+++.    ..+..+. +.  -
T Consensus       103 ~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH----PS~KLALsVg~D~~lr~WNLV~Gr~----a~v~~L~-~~--a  171 (362)
T KOG0294|consen  103 GSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH----PSGKLALSVGGDQVLRTWNLVRGRV----AFVLNLK-NK--A  171 (362)
T ss_pred             ecCCCcEEEEEcCCeEEeeeecccccccceeEec----CCCceEEEEcCCceeeeehhhcCcc----ceeeccC-Cc--c
Confidence            99999999999  557889999999999999998    8999999999999999999998864    1122222 22  2


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      +.+.|+| .+.+++.++.+ .|-+|.+.+........                                           
T Consensus       172 t~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~-------------------------------------------  206 (362)
T KOG0294|consen  172 TLVSWSP-QGDHFVVSGRN-KIDIYQLDNASVFREIE-------------------------------------------  206 (362)
T ss_pred             eeeEEcC-CCCEEEEEecc-EEEEEecccHhHhhhhh-------------------------------------------
Confidence            3489997 66777777664 58899887764322111                                           


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEe--cCC-eEEEEecCCCcEEE
Q 010784          342 AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM--DPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~~l~~gs~dg~i~i  417 (501)
                        .+..+.++.|. ++..+++|.++. |++||......      ...+.+|...|.++.+  .|. .++++.|.||.|+|
T Consensus       207 --~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~------~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v  277 (362)
T KOG0294|consen  207 --NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP------LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV  277 (362)
T ss_pred             --ccccceeeeec-CCceEEEecCCceEEEeccCCCcc------ceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence              12345566664 566788888888 99999998544      4899999999999984  445 89999999999999


Q ss_pred             EeCCCc
Q 010784          418 WETDTG  423 (501)
Q Consensus       418 wd~~~~  423 (501)
                      ||++..
T Consensus       278 Wd~~~~  283 (362)
T KOG0294|consen  278 WDIDME  283 (362)
T ss_pred             EEcccc
Confidence            999875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=1.6e-25  Score=197.77  Aligned_cols=354  Identities=13%  Similarity=0.176  Sum_probs=252.3

Q ss_pred             eeeEEEecCCCCceEEeeCCcEEEeecCCee--------eEEEEecccccccceecccCCcceeEEEeeccCc-------
Q 010784          102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQ--------NIKIDNFLSESYYRATLSDHKARITCMRLFPLHE-------  166 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~--------~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-------  166 (501)
                      .+..+..|...|.|++++|+...+++|..-+        .+++||..+ ...++.+..-...|+|++|++.+.       
T Consensus        96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~-L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v  174 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT-LSTLHVIGFFDRGVTCVAFSKINGGSLLCAV  174 (626)
T ss_pred             hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccc-ceeeeeeccccccceeeeecccCCCceEEEe
Confidence            3445666777899999999999999987765        599999766 355666666677799999987654       


Q ss_pred             --------------------------CcccccCCCCcCcEEEEeeCCCceEEec--CCcee---eeccCC-CCceEEEEe
Q 010784          167 --------------------------TSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ---RCFKGH-NGPVSTLSD  214 (501)
Q Consensus       167 --------------------------~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~---~~~~~h-~~~v~~l~~  214 (501)
                                                ..++.+.|.|.+..++.....|.+.+|+  .+...   ..|..+ ...|.|++|
T Consensus       175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F  254 (626)
T KOG2106|consen  175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF  254 (626)
T ss_pred             cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence                                      2345666667665444444578899998  22222   233333 367999999


Q ss_pred             eecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccc
Q 010784          215 KLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV  294 (501)
Q Consensus       215 s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~  294 (501)
                      .    ++ .-+++|..+|.|.||+..+...      .+....|.+.|.+++... ++ .|++|+.|..|..|| ..-+.+
T Consensus       255 ~----en-gdviTgDS~G~i~Iw~~~~~~~------~k~~~aH~ggv~~L~~lr-~G-tllSGgKDRki~~Wd-~~y~k~  320 (626)
T KOG2106|consen  255 L----EN-GDVITGDSGGNILIWSKGTNRI------SKQVHAHDGGVFSLCMLR-DG-TLLSGGKDRKIILWD-DNYRKL  320 (626)
T ss_pred             c----CC-CCEEeecCCceEEEEeCCCceE------EeEeeecCCceEEEEEec-Cc-cEeecCccceEEecc-cccccc
Confidence            5    44 4678999999999999977653      444459999999999984 55 566799999999999 332222


Q ss_pred             cceecccceecCCCceeeecCCCeEEEEeCCc-EEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEe
Q 010784          295 RSSCCVGMTSVPGVPVDMKCHESMLYIASGSS-VVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWD  372 (501)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd  372 (501)
                      +..   ......+.+..+......+++.+... |..=.++++- .....+|......++.+|+...+++++.|+ +++|+
T Consensus       321 r~~---elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f-~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  321 RET---ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF-TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN  396 (626)
T ss_pred             ccc---cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc-eEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence            222   22234455555555555566666553 3333444433 344567888999999999999999999999 99999


Q ss_pred             cCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784          373 IRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR  452 (501)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  452 (501)
                        ..+.      ..+.. -..++.++.|+|...++.|+..|...+.|.++...+..-     .. ..++++++|+|+|.+
T Consensus       397 --~~k~------~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~-----~d-~~~ls~v~ysp~G~~  461 (626)
T KOG2106|consen  397 --DHKL------EWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIH-----TD-NEQLSVVRYSPDGAF  461 (626)
T ss_pred             --CCce------eEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccceeEEEE-----ec-CCceEEEEEcCCCCE
Confidence              2221      12222 356789999999988888899999999999985555443     22 678999999999999


Q ss_pred             EEEeecCCCceEEEeeccCC-----------------------ccceeecCCCCceeeeccc
Q 010784          453 IVTASYGEPGLLQFRDFSNA-----------------------TCPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       453 l~s~~~d~~g~i~~w~~~~~-----------------------~~~~~s~~~d~~~~~w~~~  491 (501)
                      ||.|+  +|+.|++|.++.+                       .+.+.+.+.|-.+-+|...
T Consensus       462 lAvgs--~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  462 LAVGS--HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             EEEec--CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            99999  6799999876544                       4445566666667777443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.4e-27  Score=190.27  Aligned_cols=252  Identities=19%  Similarity=0.208  Sum_probs=201.1

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc--ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES--YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      |...|..+.++-.|+.|||++.|++|+|+..+++.  +++.+|.||.++|+.++|...           .-|.+||++++
T Consensus        10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP-----------k~G~iLAScsY   78 (299)
T KOG1332|consen   10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP-----------KFGTILASCSY   78 (299)
T ss_pred             hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc-----------ccCcEeeEeec
Confidence            44457778888889999999999999999998764  678899999999999999641           16899999999


Q ss_pred             CCceEEec--CC--ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784          187 DHSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       187 dg~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      ||.|.||.  .+  ........|...|++++|.|  ..-|-.|++++.||.|.|.+.+....   .........|.-.|+
T Consensus        79 DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wap--heygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~Gvn  153 (299)
T KOG1332|consen   79 DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAP--HEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVN  153 (299)
T ss_pred             CceEEEEecCCCchhhhhhhhhhcccceeecccc--cccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccc
Confidence            99999998  22  23445678999999999964  45678999999999999999987621   223455678999999


Q ss_pred             EEEEeecC--C-----------eEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784          263 LMSVAGHK--S-----------FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT  329 (501)
Q Consensus       263 ~l~~~~~~--~-----------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  329 (501)
                      +++|.|..  +           ..|++|+.|..|+||+...++-+                                   
T Consensus       154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-----------------------------------  198 (299)
T KOG1332|consen  154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-----------------------------------  198 (299)
T ss_pred             eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh-----------------------------------
Confidence            99999851  2           46999999999999998876321                                   


Q ss_pred             EEcCCCceEeeeccCCCcEEEEEEcCC----CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784          330 IDLRTMQKVMTPAICKPILHSFSIMPS----KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-  403 (501)
Q Consensus       330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~----~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-  403 (501)
                             ...++.+|.+.|..++|.|.    ..+|++++.|+ +.||..+.....-+.+.   ++.....+..+.|+.. 
T Consensus       199 -------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl---l~~f~~~~w~vSWS~sG  268 (299)
T KOG1332|consen  199 -------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL---LEEFPDVVWRVSWSLSG  268 (299)
T ss_pred             -------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc---cccCCcceEEEEEeccc
Confidence                   12357889999999999996    36899999999 99998874322212222   3334678999999999 


Q ss_pred             eEEEEecCCCcEEEEeCC
Q 010784          404 KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       404 ~~l~~gs~dg~i~iwd~~  421 (501)
                      .+|+.++.|+.|.+|.-.
T Consensus       269 n~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  269 NILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cEEEEecCCcEEEEEEeC
Confidence            888888899999999743

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1e-26  Score=203.08  Aligned_cols=252  Identities=19%  Similarity=0.260  Sum_probs=213.0

Q ss_pred             ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee----e-------------ec-cCC
Q 010784          146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ----R-------------CF-KGH  205 (501)
Q Consensus       146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~----~-------------~~-~~h  205 (501)
                      ...+..|.-+|.+++++|             ++.+.++++.||+|.=|+  +++..    .             .- ++|
T Consensus       135 ~~~~~~H~~s~~~vals~-------------d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h  201 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSP-------------DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGH  201 (479)
T ss_pred             ceeeccccCcceEEEeec-------------cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccc
Confidence            566778999999999999             889999999999999998  44321    0             11 278


Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRV  285 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~v  285 (501)
                      ...+.+++.+    ++|++|++|+.|..|.||+.++.+      .++.+.+|.+.|.+++|-. +...+++++.|+.|++
T Consensus       202 ~keil~~avS----~Dgkylatgg~d~~v~Iw~~~t~e------hv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkv  270 (479)
T KOG0299|consen  202 VKEILTLAVS----SDGKYLATGGRDRHVQIWDCDTLE------HVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKV  270 (479)
T ss_pred             cceeEEEEEc----CCCcEEEecCCCceEEEecCcccc------hhhcccccccceeeeeeec-CccceeeeecCCceEE
Confidence            8899999997    899999999999999999999987      4888999999999999985 7788999999999999


Q ss_pred             EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC
Q 010784          286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI  365 (501)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  365 (501)
                      |++.....                                            +.++-+|++.|.++....-++.+.+|+.
T Consensus       271 w~~~~~s~--------------------------------------------vetlyGHqd~v~~IdaL~reR~vtVGgr  306 (479)
T KOG0299|consen  271 WSIDQLSY--------------------------------------------VETLYGHQDGVLGIDALSRERCVTVGGR  306 (479)
T ss_pred             EehhHhHH--------------------------------------------HHHHhCCccceeeechhcccceEEeccc
Confidence            99987633                                            3456689999999999888999999988


Q ss_pred             Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCC-------CC
Q 010784          366 GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPE-------EA  437 (501)
Q Consensus       366 d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~-------~~  437 (501)
                      |+ +++|++.....       ..+.+|.+.+-|++|-.+.-+++||.||.|.+|++...+++.+....++.       .+
T Consensus       307 DrT~rlwKi~eesq-------lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~  379 (479)
T KOG0299|consen  307 DRTVRLWKIPEESQ-------LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNG  379 (479)
T ss_pred             cceeEEEeccccce-------eeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcccccc
Confidence            88 99999955432       56778899999999999977778899999999999999988877543322       22


Q ss_pred             CcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          438 DISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       438 ~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      ..+|++++..|...++++|+  .+|.|++|-+..+.+
T Consensus       380 ~~Witsla~i~~sdL~asGS--~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  380 NFWITSLAVIPGSDLLASGS--WSGCVRLWKIEDGLR  414 (479)
T ss_pred             ccceeeeEecccCceEEecC--CCCceEEEEecCCcc
Confidence            34899999999999999999  569999999988843

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.6e-27  Score=218.40  Aligned_cols=289  Identities=17%  Similarity=0.256  Sum_probs=223.4

Q ss_pred             CCCCceEEeeCCcEEEeecCCeeeEEEEeccccc---ccceecccCC---cceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES---YYRATLSDHK---ARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~---~~~~~~~~h~---~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ..+.+.|...++-..++.++. ..++|+.+....   ++...+++..   -.+..+.|...            +.++|||
T Consensus        39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~------------~~NlIAT  105 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL------------YSNLIAT  105 (839)
T ss_pred             ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccc------------hhhhhee
Confidence            345788888888888877765 455666554321   1111111111   23556777643            6899999


Q ss_pred             eeCCCceEEecC-----CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784          184 SSCDHSIRLWWK-----GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE  258 (501)
Q Consensus       184 ~~~dg~i~vwd~-----~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  258 (501)
                      ++..|.|.+||.     .+.+..|..|+..++++.|+   .....+|++|+.||+|++||++....      ..++.+..
T Consensus       106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh---~tep~iliSGSQDg~vK~~DlR~~~S------~~t~~~nS  176 (839)
T KOG0269|consen  106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFH---STEPNILISGSQDGTVKCWDLRSKKS------KSTFRSNS  176 (839)
T ss_pred             ecCCCcEEEEecCccccchhhhHhhhhccceeeeeec---cCCccEEEecCCCceEEEEeeecccc------cccccccc
Confidence            999999999992     34566789999999999998   46678999999999999999998774      77888888


Q ss_pred             CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784          259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV  338 (501)
Q Consensus       259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  338 (501)
                      ..|+.+.|+|..++.|+++...|.+.+||++...                                           +..
T Consensus       177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-------------------------------------------r~~  213 (839)
T KOG0269|consen  177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-------------------------------------------RCE  213 (839)
T ss_pred             hhhhceeeccCCCceEEEecCCceEEEeeccCch-------------------------------------------hHH
Confidence            9999999999999999999999999999999764                                           233


Q ss_pred             eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEec--CCC
Q 010784          339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGR--DDL  413 (501)
Q Consensus       339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs--~dg  413 (501)
                      ..+..|.++|.++.|+|++.+||+|+.|+ |+|||+...+.    .++.++.. ..+|.++.|-|.  ..|++++  .|-
T Consensus       214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~----~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dt  288 (839)
T KOG0269|consen  214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA----KPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDT  288 (839)
T ss_pred             HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc----cceeEEee-cceeeeeeeccCccchhhhhhccccc
Confidence            46678999999999999999999999999 99999997653    34455543 678999999998  6677665  478


Q ss_pred             cEEEEeCCCc-ccccccccCCCCCCCcceeeeEeec-cccEEEEeecCCCceEEEeeccCCccc
Q 010784          414 RINIWETDTG-MLANSLLCNYPEEADISTGCSAMAV-SGCRIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       414 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      .|+|||++.. -+..++     ..|...++.++|.. |-..+.+++  .||.|..=.+.+...+
T Consensus       289 sV~VWDvrRPYIP~~t~-----~eH~~~vt~i~W~~~d~~~l~s~s--KD~tv~qh~~knat~p  345 (839)
T KOG0269|consen  289 SVHVWDVRRPYIPYATF-----LEHTDSVTGIAWDSGDRINLWSCS--KDGTVLQHLFKNATTP  345 (839)
T ss_pred             eEEEEeeccccccceee-----eccCccccceeccCCCceeeEeec--CccHHHHhhhhcccCh
Confidence            8999999764 344556     56788999999975 556778888  5588776555544443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=1.7e-25  Score=204.89  Aligned_cols=355  Identities=14%  Similarity=0.139  Sum_probs=250.1

Q ss_pred             EEecCCCCceEEeeC---CcEEEeecCCeeeEEEEeccccc------------------------ccc------eecccC
Q 010784          106 FYSVAKPHDHILLDN---NDIFSTQGSSIQNIKIDNFLSES------------------------YYR------ATLSDH  152 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~---~~~~~~~g~~d~~i~vw~~~~~~------------------------~~~------~~~~~h  152 (501)
                      +.+|..-|..++|..   +..++|+++.|..|+||.+.-+.                        +..      ..+.||
T Consensus       187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH  266 (764)
T KOG1063|consen  187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH  266 (764)
T ss_pred             eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence            344555588888873   45799999999999999864321                        111      234599


Q ss_pred             CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CCce-----eeeccCCCCceEEEEeeecCCCCCC
Q 010784          153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KGSC-----QRCFKGHNGPVSTLSDKLLGDGSGK  223 (501)
Q Consensus       153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~~~-----~~~~~~h~~~v~~l~~s~~~~~~~~  223 (501)
                      .+.|+++.|+|             .+..|++++.|.++.+|.    +|--     +....+..+......|+    ++++
T Consensus       267 eDWV~sv~W~p-------------~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~----~n~~  329 (764)
T KOG1063|consen  267 EDWVYSVWWHP-------------EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS----PNSN  329 (764)
T ss_pred             ccceEEEEEcc-------------chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc----CCCC
Confidence            99999999999             788999999999999996    2221     12233445568888886    8889


Q ss_pred             EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce
Q 010784          224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT  303 (501)
Q Consensus       224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~  303 (501)
                      .+++-+.-|..++|.....   ..+.....+.+|.+.|++++|.| .+.+|++.|.|.+-|++-.-..+...+ +.....
T Consensus       330 ~ii~~g~~Gg~hlWkt~d~---~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wH-EiaRPQ  404 (764)
T KOG1063|consen  330 VIIAHGRTGGFHLWKTKDK---TFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWH-EIARPQ  404 (764)
T ss_pred             EEEEecccCcEEEEeccCc---cceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccccccccee-eecccc
Confidence            9999999999999993322   23445667789999999999998 678999999999999986552221100 111111


Q ss_pred             ecCCCceeeecCC-CeEEEEeCC--cEEEEEc-------------------------------------------CCC--
Q 010784          304 SVPGVPVDMKCHE-SMLYIASGS--SVVTIDL-------------------------------------------RTM--  335 (501)
Q Consensus       304 ~~~~~~~~~~~~~-~~~~~~~~~--~i~~~d~-------------------------------------------~~~--  335 (501)
                      .+.....++.+-+ +..++..+.  -+++|+.                                           +++  
T Consensus       405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~  484 (764)
T KOG1063|consen  405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE  484 (764)
T ss_pred             cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence            1112222222222 222222211  1222111                                           000  


Q ss_pred             -------------------------------ceEeeeccCCCcEEEEEEcCCCcEEEEEcC-----Cc-EEEEecCCCCC
Q 010784          336 -------------------------------QKVMTPAICKPILHSFSIMPSKSLICTGGI-----GK-AMTWDIRRSQD  378 (501)
Q Consensus       336 -------------------------------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-----d~-i~iwd~~~~~~  378 (501)
                                                     ..+..+.+|...|++++.+|+++++|+++.     .. |++|+..+...
T Consensus       485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~  564 (764)
T KOG1063|consen  485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ  564 (764)
T ss_pred             cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence                                           113455688999999999999999999982     33 99999998665


Q ss_pred             CCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          379 AVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       379 ~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      .      ..+.+|+-.|+.|+|+|+ ++|++.|.|+++.+|...... ...+.....+.|...|..+.|+|++.+++|+|
T Consensus       565 ~------~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~-~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS  637 (764)
T KOG1063|consen  565 V------QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI-KDEFRFACLKAHTRIIWDCSWSPDEKYFATAS  637 (764)
T ss_pred             h------heecccceEEEEEEECCCCcEEEEeecCceEEeeeeeccc-chhhhhccccccceEEEEcccCcccceeEEec
Confidence            4      789999999999999999 888888999999999985432 22222222478899999999999999999999


Q ss_pred             cCCCceEEEeeccCC--c----------------------------cceeecCCCCceeeeccc
Q 010784          458 YGEPGLLQFRDFSNA--T----------------------------CPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       458 ~d~~g~i~~w~~~~~--~----------------------------~~~~s~~~d~~~~~w~~~  491 (501)
                        .|..|.+|.....  .                            ..++.|-+.|.+.+|+..
T Consensus       638 --RDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  638 --RDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             --CCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence              5699999986544  1                            124567788888888855

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.4e-27  Score=219.61  Aligned_cols=248  Identities=17%  Similarity=0.238  Sum_probs=204.9

Q ss_pred             CceEEee-CCcEEEeecCCeeeEEEEeccc--ccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784          113 HDHILLD-NNDIFSTQGSSIQNIKIDNFLS--ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS  189 (501)
Q Consensus       113 i~~~~~~-~~~~~~~~g~~d~~i~vw~~~~--~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  189 (501)
                      ...+.|+ -+..+|||++..|.|.+||+..  ..+.+..|..|+..|+++.|++.            ..++|++|+.||+
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t------------ep~iliSGSQDg~  157 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST------------EPNILISGSQDGT  157 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC------------CccEEEecCCCce
Confidence            4455555 4568999999999999999986  34677789999999999999985            6799999999999


Q ss_pred             eEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784          190 IRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA  267 (501)
Q Consensus       190 i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  267 (501)
                      |++||  ..+...++.+....|+.+.|+|   ..+..|+++.+.|.+++||++....     +...+..|+++|.++.|+
T Consensus       158 vK~~DlR~~~S~~t~~~nSESiRDV~fsp---~~~~~F~s~~dsG~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwh  229 (839)
T KOG0269|consen  158 VKCWDLRSKKSKSTFRSNSESIRDVKFSP---GYGNKFASIHDSGYLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWH  229 (839)
T ss_pred             EEEEeeecccccccccccchhhhceeecc---CCCceEEEecCCceEEEeeccCchh-----HHHHhhcccCceEEEeec
Confidence            99999  6667778888899999999995   5688999999999999999998776     788899999999999999


Q ss_pred             ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCc
Q 010784          268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPI  347 (501)
Q Consensus       268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  347 (501)
                      | ++.+|+|||.|+.|+|||..+.+.-                                          .+.++. ...+
T Consensus       230 P-nr~~lATGGRDK~vkiWd~t~~~~~------------------------------------------~~~tIn-Tiap  265 (839)
T KOG0269|consen  230 P-NREWLATGGRDKMVKIWDMTDSRAK------------------------------------------PKHTIN-TIAP  265 (839)
T ss_pred             C-CCceeeecCCCccEEEEeccCCCcc------------------------------------------ceeEEe-ecce
Confidence            9 8899999999999999999875431                                          111222 2567


Q ss_pred             EEEEEEcCCC-cEEEEEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCC
Q 010784          348 LHSFSIMPSK-SLICTGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       348 v~~v~~~~~~-~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~  421 (501)
                      |..+.|-|.. ..|++++  .|. |+|||++.+-     -|..++..|...++.++|...  .++.+++.||+|..-.++
T Consensus       266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-----IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-----IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             eeeeeeccCccchhhhhhccccceEEEEeecccc-----ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence            8999999974 5677766  566 9999999864     457889999999999999774  777788899998877776


Q ss_pred             Cccccccc
Q 010784          422 TGMLANSL  429 (501)
Q Consensus       422 ~~~~~~~~  429 (501)
                      ++..-..+
T Consensus       341 nat~pid~  348 (839)
T KOG0269|consen  341 NATTPIDL  348 (839)
T ss_pred             cccChhhh
Confidence            65443333

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.4e-25  Score=186.24  Aligned_cols=273  Identities=16%  Similarity=0.231  Sum_probs=203.8

Q ss_pred             cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec------CCceeeeccCCCCceEEEEeeecCCCCC
Q 010784          149 LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW------KGSCQRCFKGHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       149 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd------~~~~~~~~~~h~~~v~~l~~s~~~~~~~  222 (501)
                      -.+|.+-|+++.|.+             -|+.+|+|+.|++|+|||      +-.+....+.|.+.|..+.|.+  +.-|
T Consensus         9 ~s~h~DlihdVs~D~-------------~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh--PEfG   73 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDF-------------YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH--PEFG   73 (361)
T ss_pred             ccCCcceeeeeeecc-------------cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC--cccc
Confidence            358999999999998             799999999999999998      2245566789999999999952  4568


Q ss_pred             CEEEEeeCCCcEEEEeccCC--Cc-cccccceeeccCCCCceeEEEEeec-CCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784          223 KILASGGEDATVRLWSLSSS--GK-RGQQALKATLYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSC  298 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~--~~-~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  298 (501)
                      +.+++++.|+++.||.-...  +. ...+....++......|+.+.|.|. -+-.+++++.||.++||+.-..-.+....
T Consensus        74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~  153 (361)
T KOG2445|consen   74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT  153 (361)
T ss_pred             ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence            99999999999999976321  11 1245556677788899999999985 47789999999999999976553322221


Q ss_pred             cccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCC------cEE
Q 010784          299 CVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIG------KAM  369 (501)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d------~i~  369 (501)
                      ..+.+.                               ..+.....+.....|+.|+|.   ..+|+.|+++      .+.
T Consensus       154 Lq~Ei~-------------------------------~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~  202 (361)
T KOG2445|consen  154 LQHEIQ-------------------------------NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVK  202 (361)
T ss_pred             hhhhhh-------------------------------hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceE
Confidence            111110                               000111134566788999875   6789999977      588


Q ss_pred             EEecCCCCCCCCCCCcccccCcccCeEEEEecCC-----eEEEEecCCCcEEEEeCCCcc------------ccccc---
Q 010784          370 TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-----KIVTGGRDDLRINIWETDTGM------------LANSL---  429 (501)
Q Consensus       370 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~l~~gs~dg~i~iwd~~~~~------------~~~~~---  429 (501)
                      ||........  ...+.++.+|..+|+.|+|.|+     .++|+++.|| |+||.+....            .+..+   
T Consensus       203 Iye~~e~~rK--w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~  279 (361)
T KOG2445|consen  203 IYEYNENGRK--WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE  279 (361)
T ss_pred             EEEecCCcce--eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE
Confidence            8877665422  4566888899999999999996     7899999999 9999997311            11111   


Q ss_pred             ccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          430 LCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       430 ~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      ......+|.+.|..+.|+-.|..|++.|  .||+|++|..+..
T Consensus       280 ~vs~~~~H~~~VWrv~wNmtGtiLsStG--dDG~VRLWkany~  320 (361)
T KOG2445|consen  280 KVSELDDHNGEVWRVRWNMTGTILSSTG--DDGCVRLWKANYN  320 (361)
T ss_pred             EeeeccCCCCceEEEEEeeeeeEEeecC--CCceeeehhhhhh
Confidence            1111257889999999999999999999  7799999985543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=1.2e-25  Score=210.12  Aligned_cols=329  Identities=15%  Similarity=0.178  Sum_probs=256.9

Q ss_pred             EEecCCCCceEEeeCCcEEE-eecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          106 FYSVAKPHDHILLDNNDIFS-TQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~-~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      |......|+.+.|..||..+ |+|+..|.+.+||++.. +.+..+ ..|.+.|....|.|             ....+++
T Consensus       240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~sv~~~~fl~-------------~epVl~t  305 (910)
T KOG1539|consen  240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGSVTGATFLP-------------GEPVLVT  305 (910)
T ss_pred             EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCCcccceecC-------------CCceEee
Confidence            33345789999999888655 67788899999999974 555544 48999999999998             7889999


Q ss_pred             eeCCCceEEe--c----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc-------------
Q 010784          184 SSCDHSIRLW--W----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK-------------  244 (501)
Q Consensus       184 ~~~dg~i~vw--d----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-------------  244 (501)
                      ++.|+.+++|  |    ..+.++.-.||..+-.|+.|.   ...|..+.+++.|++.+.+++.....             
T Consensus       306 a~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy---~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~  382 (910)
T KOG1539|consen  306 AGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY---GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA  382 (910)
T ss_pred             ccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee---ccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence            9999999999  4    224566667999999999996   56788899999999888876643211             


Q ss_pred             ------------------------------------cc----------cccc-eee-----ccCCCCceeEEEEeecCCe
Q 010784          245 ------------------------------------RG----------QQAL-KAT-----LYGHEKPIKLMSVAGHKSF  272 (501)
Q Consensus       245 ------------------------------------~~----------~~~~-~~~-----~~~~~~~v~~l~~~~~~~~  272 (501)
                                                          .+          .... ...     ++.....+++++.++ .|+
T Consensus       383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGN  461 (910)
T KOG1539|consen  383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGN  461 (910)
T ss_pred             ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCc
Confidence                                                00          0000 011     111235678888886 788


Q ss_pred             EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCceEeeeccCCCcEE
Q 010784          273 LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQKVMTPAICKPILH  349 (501)
Q Consensus       273 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~  349 (501)
                      ..+.|+..|.|-+|++.++-....+.  ....+.+.+..++.+.....+.++   +-+.+||..+...+..+.. ...+.
T Consensus       462 F~~IG~S~G~Id~fNmQSGi~r~sf~--~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~  538 (910)
T KOG1539|consen  462 FVFIGYSKGTIDRFNMQSGIHRKSFG--DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSIT  538 (910)
T ss_pred             eEEEeccCCeEEEEEcccCeeecccc--cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcc
Confidence            99999999999999999985443321  233567778888877765444433   4799999999887777764 56778


Q ss_pred             EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccccc
Q 010784          350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLAN  427 (501)
Q Consensus       350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~  427 (501)
                      .+..+....+++.+.++- |+++|..+.+.+      +.+.+|.+.|++++|||+ +.+++++.|++|++||+.++.++.
T Consensus       539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv------R~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID  612 (910)
T KOG1539|consen  539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVV------REFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID  612 (910)
T ss_pred             eeeeeehhhhhhhhcCceeEEEEEchhhhhh------HHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence            888888888999999998 999999986554      999999999999999999 999999999999999999999998


Q ss_pred             ccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          428 SLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       428 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      .+..      ..+.+.+.|||+|.+||++..| ..-|++|.
T Consensus       613 ~~~v------d~~~~sls~SPngD~LAT~Hvd-~~gIylWs  646 (910)
T KOG1539|consen  613 GLLV------DSPCTSLSFSPNGDFLATVHVD-QNGIYLWS  646 (910)
T ss_pred             eEec------CCcceeeEECCCCCEEEEEEec-CceEEEEE
Confidence            8842      5678999999999999999864 34588886

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=7.9e-28  Score=221.06  Aligned_cols=252  Identities=20%  Similarity=0.383  Sum_probs=217.6

Q ss_pred             CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce
Q 010784          121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC  198 (501)
Q Consensus       121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~  198 (501)
                      .+.+++.+..+-.+++|+.+       .+..|...|.++..-.             .++.+++|+.|..+-+|.  ....
T Consensus         3 ~~~~~m~~~~~t~Lr~~~~~-------~~~~hsaav~~lk~~~-------------s~r~~~~Gg~~~k~~L~~i~kp~~   62 (825)
T KOG0267|consen    3 GMEFLMKTKRATKLRVWDTR-------EFVAHSAAVGCLKIRK-------------SSRSLVTGGEDEKVNLWAIGKPNA   62 (825)
T ss_pred             cccccceeeeeeccccccch-------hhhhhhhhhceeeeec-------------cceeeccCCCceeeccccccCCch
Confidence            34455566666677788855       2346888899988755             679999999999999998  4445


Q ss_pred             eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe
Q 010784          199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS  278 (501)
Q Consensus       199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s  278 (501)
                      +..+.+|+.+|.++.|+    ....+|++|+.+|+|++||++...      .+.++.+|...+..+.|+| -+.++++|+
T Consensus        63 i~S~~~hespIeSl~f~----~~E~LlaagsasgtiK~wDleeAk------~vrtLtgh~~~~~sv~f~P-~~~~~a~gS  131 (825)
T KOG0267|consen   63 ITSLTGHESPIESLTFD----TSERLLAAGSASGTIKVWDLEEAK------IVRTLTGHLLNITSVDFHP-YGEFFASGS  131 (825)
T ss_pred             hheeeccCCcceeeecC----cchhhhcccccCCceeeeehhhhh------hhhhhhccccCcceeeecc-ceEEecccc
Confidence            66789999999999996    788899999999999999999877      4889999999999999998 688889999


Q ss_pred             CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc
Q 010784          279 KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS  358 (501)
Q Consensus       279 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~  358 (501)
                      .|+.+++||++..                                            .+.+.+.+|...+..+.|+|+|+
T Consensus       132 tdtd~~iwD~Rk~--------------------------------------------Gc~~~~~s~~~vv~~l~lsP~Gr  167 (825)
T KOG0267|consen  132 TDTDLKIWDIRKK--------------------------------------------GCSHTYKSHTRVVDVLRLSPDGR  167 (825)
T ss_pred             ccccceehhhhcc--------------------------------------------CceeeecCCcceeEEEeecCCCc
Confidence            9999999999854                                            23456677899999999999999


Q ss_pred             EEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCC
Q 010784          359 LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEE  436 (501)
Q Consensus       359 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~  436 (501)
                      +++.|++|. ++|||...++..      .+|..|.+.+.++.|+|. -+++.|+.|+++++||+++.+.+...     ..
T Consensus       168 ~v~~g~ed~tvki~d~~agk~~------~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~-----~~  236 (825)
T KOG0267|consen  168 WVASGGEDNTVKIWDLTAGKLS------KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG-----KP  236 (825)
T ss_pred             eeeccCCcceeeeecccccccc------cccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc-----CC
Confidence            999999999 999999997765      899999999999999999 89999999999999999999888877     34


Q ss_pred             CCcceeeeEeeccccEEEEeec
Q 010784          437 ADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       437 ~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      ....|.+.+|+|+++.+.+|..
T Consensus       237 ~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  237 ETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             ccCCceeeeecCCceeeecCch
Confidence            4678999999999999998864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.9e-25  Score=185.21  Aligned_cols=296  Identities=15%  Similarity=0.154  Sum_probs=208.4

Q ss_pred             cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC----Cceeeecc--CCCCceEEEEeeecC
Q 010784          145 YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK----GSCQRCFK--GHNGPVSTLSDKLLG  218 (501)
Q Consensus       145 ~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~----~~~~~~~~--~h~~~v~~l~~s~~~  218 (501)
                      .+.+|++|.+.|++++|+.             ||+.|+|++.|++|+||+.    .+.-+.++  -.-+.-+.+.|.|  
T Consensus        78 ~~~~LKgH~~~vt~~~FsS-------------dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap--  142 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSS-------------DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP--  142 (420)
T ss_pred             hhhhhhccCCceeeeEEcC-------------CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC--
Confidence            3457899999999999999             8999999999999999982    11111111  1122456778872  


Q ss_pred             CCCCCEEEEeeCCCcEEEEeccCCCccc-c-----ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784          219 DGSGKILASGGEDATVRLWSLSSSGKRG-Q-----QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS  292 (501)
Q Consensus       219 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~-----~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~  292 (501)
                       ....++++.-...++++|.+....... .     +.....-+.|.-.|..+-.. +++.+|++++.|..|.+|+++ ++
T Consensus       143 -Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  143 -DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             -CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cc
Confidence             334456666666789999876533200 0     00111223466667777776 478999999999999999999 65


Q ss_pred             cccceecccceecCCCceeeecCCCeEEEEeCC---cEEEEEcC--------CCceEeeeccCCCcEEEEEEcCCCcEEE
Q 010784          293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS---SVVTIDLR--------TMQKVMTPAICKPILHSFSIMPSKSLIC  361 (501)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~d~~--------~~~~~~~~~~~~~~v~~v~~~~~~~~l~  361 (501)
                      .+.+...     ....-.....+|++.+++..+   .+.+|.+-        .-..+..+++|...|..++|+++.+.++
T Consensus       220 ~L~~idt-----nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v  294 (420)
T KOG2096|consen  220 LLQSIDT-----NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV  294 (420)
T ss_pred             eeeeecc-----ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence            5443322     222334456677888877765   79999762        2234678899999999999999999999


Q ss_pred             EEcCCc-EEEEecCCCCCCCC-CCCcccc----cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCC
Q 010784          362 TGGIGK-AMTWDIRRSQDAVK-PQPMAEL----DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP  434 (501)
Q Consensus       362 ~~~~d~-i~iwd~~~~~~~~~-~~~~~~~----~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~  434 (501)
                      +.+.|+ ++|||+.-.-...+ ++.+.+.    ....+....+..+|. ..++.+ ....++++..++|+...+++    
T Consensus       295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e----  369 (420)
T KOG2096|consen  295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELE----  369 (420)
T ss_pred             EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHH----
Confidence            999999 99999864211100 1112221    112333448999999 888874 66789999999999888886    


Q ss_pred             CCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          435 EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       435 ~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      ..|...|.+++|+++|+++++++   |..+++..-.+
T Consensus       370 ~~h~~~Is~is~~~~g~~~atcG---dr~vrv~~ntp  403 (420)
T KOG2096|consen  370 DIHSTTISSISYSSDGKYIATCG---DRYVRVIRNTP  403 (420)
T ss_pred             HhhcCceeeEEecCCCcEEeeec---ceeeeeecCCC
Confidence            67888999999999999999995   47888876433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.9e-26  Score=214.41  Aligned_cols=234  Identities=16%  Similarity=0.250  Sum_probs=185.5

Q ss_pred             eecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc----------------------------------
Q 010784          200 RCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK----------------------------------  244 (501)
Q Consensus       200 ~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----------------------------------  244 (501)
                      +.+. .|.+.|.+|.|+    ++|+|||+|+.||.|+||.+...+.                                  
T Consensus       260 Qe~~~ah~gaIw~mKFS----~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~  335 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFS----HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR  335 (712)
T ss_pred             eccccccCCcEEEEEeC----CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence            3445 899999999998    8999999999999999998866100                                  


Q ss_pred             --------------------cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784          245 --------------------RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       245 --------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                                          ....+++..+.+|.+.|..|.|+  ..++|++++.|.+|++|++...+++          
T Consensus       336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL----------  403 (712)
T KOG0283|consen  336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECL----------  403 (712)
T ss_pred             ccccccccCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCccee----------
Confidence                                11234567789999999999998  5679999999999999999876442          


Q ss_pred             cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784          305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDAVKP  382 (501)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~  382 (501)
                                                        ..|. |.+.|+||+|+| |.+||++|+-|+ ||||++...+.+   
T Consensus       404 ----------------------------------~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv---  445 (712)
T KOG0283|consen  404 ----------------------------------KVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV---  445 (712)
T ss_pred             ----------------------------------eEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE---
Confidence                                              2332 899999999999 689999999888 999999986543   


Q ss_pred             CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCC----CCCCCcceeeeEeecccc-EEEEe
Q 010784          383 QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNY----PEEADISTGCSAMAVSGC-RIVTA  456 (501)
Q Consensus       383 ~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~-~l~s~  456 (501)
                          ....-..-|++++|.|+ +..+.|+.+|.+++|++...+....+..+.    ...|. .|+++.|.|... .+++.
T Consensus       446 ----~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT  520 (712)
T KOG0283|consen  446 ----DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVT  520 (712)
T ss_pred             ----eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEe
Confidence                23333478999999999 999999999999999998877665543211    12233 799999997543 35555


Q ss_pred             ecCCCceEEEeec-----------------------cCCccceeecCCCCceeeecccCCC
Q 010784          457 SYGEPGLLQFRDF-----------------------SNATCPVLKHEVQNDSKFWGPQCYS  494 (501)
Q Consensus       457 ~~d~~g~i~~w~~-----------------------~~~~~~~~s~~~d~~~~~w~~~~~~  494 (501)
                      +  +|..|+|+|.                       ..++++++++++|..+.+|+.+...
T Consensus       521 S--nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  521 S--NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             c--CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            5  6799999994                       3577889999999999999986554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-24  Score=198.83  Aligned_cols=334  Identities=12%  Similarity=0.134  Sum_probs=248.6

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc-ceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA-RITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      .|.+|.++|++.+...+|.+-.+|.|.+|++..+......+.++.+ .|.+++|++              +..|++.+.+
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e--------------~~RLFS~g~s   89 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE--------------GGRLFSSGLS   89 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc--------------CCeEEeecCC
Confidence            4677999999999999999999999999999987777778888765 599999995              6889999999


Q ss_pred             CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784          188 HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS  265 (501)
Q Consensus       188 g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  265 (501)
                      |.|.-||  +++....+....+.|.+++.+    +.+..++.|++||.+..++...+..    .....+...++.|.+++
T Consensus        90 g~i~EwDl~~lk~~~~~d~~gg~IWsiai~----p~~~~l~IgcddGvl~~~s~~p~~I----~~~r~l~rq~sRvLsls  161 (691)
T KOG2048|consen   90 GSITEWDLHTLKQKYNIDSNGGAIWSIAIN----PENTILAIGCDDGVLYDFSIGPDKI----TYKRSLMRQKSRVLSLS  161 (691)
T ss_pred             ceEEEEecccCceeEEecCCCcceeEEEeC----CccceEEeecCCceEEEEecCCceE----EEEeecccccceEEEEE
Confidence            9999999  888888888889999999996    7889999999999777777766542    23344555678999999


Q ss_pred             EeecCCeEEEEEeCCCeEEEEECCCCccccceec-ccce--ecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEee
Q 010784          266 VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC-VGMT--SVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMT  340 (501)
Q Consensus       266 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~  340 (501)
                      |.+ ++..+++|+.||.|++||..++..+..... ....  .....++++.+-.+..+++.+  |.|.+||...+..+..
T Consensus       162 w~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS  240 (691)
T KOG2048|consen  162 WNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQS  240 (691)
T ss_pred             ecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhh
Confidence            998 788899999999999999998876441111 1111  133445666666666666654  5899999999999999


Q ss_pred             eccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEe
Q 010784          341 PAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWE  419 (501)
Q Consensus       341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd  419 (501)
                      +..|...|.+++..+++.++++++-|+ |..|...+.+..  .........|...|.+++..++ .+.+|+.|..+.+-.
T Consensus       241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE--WVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICS  317 (691)
T ss_pred             hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc--eeeeccccCCcccceeeeeecc-eEEecceeeEEEEcc
Confidence            999999999999999999999999777 777777665431  2222344567777888877776 444445666665543


Q ss_pred             CCCcc----------------------------------------c--c----cccccCCCCCCCcceeeeEeeccccEE
Q 010784          420 TDTGM----------------------------------------L--A----NSLLCNYPEEADISTGCSAMAVSGCRI  453 (501)
Q Consensus       420 ~~~~~----------------------------------------~--~----~~~~~~~~~~~~~~v~~~~~s~~g~~l  453 (501)
                      .+..+                                        .  .    .....+........|.+.+.||+|++|
T Consensus       318 s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~I  397 (691)
T KOG2048|consen  318 SREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLI  397 (691)
T ss_pred             ccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEE
Confidence            32200                                        0  0    000000001224558888999999999


Q ss_pred             EEeecCCCceEEEeeccC
Q 010784          454 VTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       454 ~s~~~d~~g~i~~w~~~~  471 (501)
                      +.+..   ..+++|.++.
T Consensus       398 a~st~---~~~~iy~L~~  412 (691)
T KOG2048|consen  398 AISTV---SRTKIYRLQP  412 (691)
T ss_pred             EEeec---cceEEEEecc
Confidence            99864   4677777665

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=7e-25  Score=181.64  Aligned_cols=265  Identities=15%  Similarity=0.142  Sum_probs=194.4

Q ss_pred             CCceEEeeC-CcEEEeecCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784          112 PHDHILLDN-NDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS  189 (501)
Q Consensus       112 ~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  189 (501)
                      .|.+|+||| ...+++.|+-|++|++|+++.. ...-+....|.++|.+++|+.             +|..+++|+.|+.
T Consensus        29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-------------dgskVf~g~~Dk~   95 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-------------DGSKVFSGGCDKQ   95 (347)
T ss_pred             chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-------------CCceEEeeccCCc
Confidence            399999999 6667779999999999999863 333466778999999999999             8999999999999


Q ss_pred             eEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784          190 IRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG  268 (501)
Q Consensus       190 i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  268 (501)
                      +++|| ....+..+..|.++|.++.|-+  ......|++||.|.+|+.||.+...      ++.++. -.+.+.++... 
T Consensus        96 ~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~--~~~~~cl~TGSWDKTlKfWD~R~~~------pv~t~~-LPeRvYa~Dv~-  165 (347)
T KOG0647|consen   96 AKLWDLASGQVSQVAAHDAPVKTCHWVP--GMNYQCLVTGSWDKTLKFWDTRSSN------PVATLQ-LPERVYAADVL-  165 (347)
T ss_pred             eEEEEccCCCeeeeeecccceeEEEEec--CCCcceeEecccccceeecccCCCC------eeeeee-ccceeeehhcc-
Confidence            99999 4446777788999999999962  2234589999999999999999765      355554 35567777664 


Q ss_pred             cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe-CCcEEEEEcCCC--ceEeeeccCC
Q 010784          269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS-GSSVVTIDLRTM--QKVMTPAICK  345 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~--~~~~~~~~~~  345 (501)
                        ..+++.+..+..|.+|+++.+....... ...+......+++-.+.+...+++ .+.+.+..+..+  +.-.+++-|.
T Consensus       166 --~pm~vVata~r~i~vynL~n~~te~k~~-~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR  242 (347)
T KOG0647|consen  166 --YPMAVVATAERHIAVYNLENPPTEFKRI-ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHR  242 (347)
T ss_pred             --CceeEEEecCCcEEEEEcCCCcchhhhh-cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEec
Confidence              3378888899999999998765432211 111122222333333344444433 456666666554  4445566554


Q ss_pred             ---------CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE
Q 010784          346 ---------PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG  408 (501)
Q Consensus       346 ---------~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~  408 (501)
                               ..|++|+|+|.-..|++++.|+ +.+||-.....+      .+.+.|..+|++..|+.+ .+++-
T Consensus       243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL------k~s~~~~qpItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL------KTSETHPQPITCCSFNRNGSIFAY  310 (347)
T ss_pred             cCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhh------hccCcCCCccceeEecCCCCEEEE
Confidence                     2478899999877788877777 999998876554      777889999999999987 55443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=8.3e-26  Score=199.41  Aligned_cols=277  Identities=16%  Similarity=0.191  Sum_probs=222.8

Q ss_pred             ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc--cccceecc--cCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE--SYYRATLS--DHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~--~~~~~~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      .|..-|..++++...+++.||+. |.|+|||+...  +.++..|.  .....|.++.++|             ||+.|++
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-------------dgrtLiv  482 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-------------DGRTLIV  482 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-------------CCceEEe
Confidence            34444788899999999999986 88999998742  12222221  2345677888887             8999999


Q ss_pred             eeCCCceEEec----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          184 SSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       184 ~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      |+.-.++.|||    +......+....-...+++.+    +|.+..+++..||.|.|||+....      ++..+.+|+.
T Consensus       483 GGeastlsiWDLAapTprikaeltssapaCyALa~s----pDakvcFsccsdGnI~vwDLhnq~------~VrqfqGhtD  552 (705)
T KOG0639|consen  483 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS----PDAKVCFSCCSDGNIAVWDLHNQT------LVRQFQGHTD  552 (705)
T ss_pred             ccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC----CccceeeeeccCCcEEEEEcccce------eeecccCCCC
Confidence            99999999999    222223343334456677775    899999999999999999999865      6999999999


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      .+.||.+++ ++..|.||+-|.+|+-||++++..+...                                          
T Consensus       553 GascIdis~-dGtklWTGGlDntvRcWDlregrqlqqh------------------------------------------  589 (705)
T KOG0639|consen  553 GASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQH------------------------------------------  589 (705)
T ss_pred             CceeEEecC-CCceeecCCCccceeehhhhhhhhhhhh------------------------------------------
Confidence            999999996 8999999999999999999988543221                                          


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i  417 (501)
                         .....|.++..+|++.+++.|..++ +.+......+.       ..+..|..-|.++.|.+. +++++.+.|..+..
T Consensus       590 ---dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-------yqlhlheScVLSlKFa~cGkwfvStGkDnlLna  659 (705)
T KOG0639|consen  590 ---DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA  659 (705)
T ss_pred             ---hhhhhheecccCCCccceeeecccCcEEEEecCCccc-------eeecccccEEEEEEecccCceeeecCchhhhhh
Confidence               1256789999999999999999888 98888876543       566778999999999999 88888789999999


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      |...-|..+...+      ..+.|.++.+|.|.++|++|+  .|..-.||.+
T Consensus       660 wrtPyGasiFqsk------E~SsVlsCDIS~ddkyIVTGS--GdkkATVYeV  703 (705)
T KOG0639|consen  660 WRTPYGASIFQSK------ESSSVLSCDISFDDKYIVTGS--GDKKATVYEV  703 (705)
T ss_pred             ccCccccceeecc------ccCcceeeeeccCceEEEecC--CCcceEEEEE
Confidence            9998888777763      367899999999999999999  4466666654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.3e-24  Score=169.26  Aligned_cols=251  Identities=14%  Similarity=0.208  Sum_probs=193.4

Q ss_pred             CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEecc------CCCcccccc---ceeeccCCCCceeEEEEeecCCeEEE
Q 010784          205 HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLS------SSGKRGQQA---LKATLYGHEKPIKLMSVAGHKSFLLV  275 (501)
Q Consensus       205 h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~------~~~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~  275 (501)
                      ....|.+++|+    |.|.+.+.|+...+++|....      ...+..+++   ....-+.|.+.|.|.+|+| .+.+++
T Consensus        31 dsqairav~fh----p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~gelia  105 (350)
T KOG0641|consen   31 DSQAIRAVAFH----PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIA  105 (350)
T ss_pred             chhheeeEEec----CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEE
Confidence            56789999998    899999999999999887432      222222222   2234467899999999998 899999


Q ss_pred             EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC----CeEEEEeCC----cEEEEEcCCCceEeeeccCCCc
Q 010784          276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE----SMLYIASGS----SVVTIDLRTMQKVMTPAICKPI  347 (501)
Q Consensus       276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~  347 (501)
                      +|+.|.+|++.-.+...............+++.+..+.+-+    ...++++++    .|++-|...++..+.+.+|.+.
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh  185 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH  185 (350)
T ss_pred             ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence            99999999998776544322222222235566666665532    344555543    7888899999999999999999


Q ss_pred             EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC---cccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784          348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG---HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      |.++ ++-++.++++|+.|. |++||++-..++  ...-..+.+   ....|.+++++|. +++++|-.|....+||++.
T Consensus       186 ilal-yswn~~m~~sgsqdktirfwdlrv~~~v--~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg  262 (350)
T KOG0641|consen  186 ILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCV--NTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG  262 (350)
T ss_pred             EEEE-EEecCcEEEccCCCceEEEEeeecccee--eeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence            9887 355889999999999 999999987655  111112222   1357999999999 9999999999999999999


Q ss_pred             cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ++.++.+     ..|...|.++.|||...++.++++|  ..|++-|+.
T Consensus       263 ~r~iq~f-----~phsadir~vrfsp~a~yllt~syd--~~ikltdlq  303 (350)
T KOG0641|consen  263 GRMIQRF-----HPHSADIRCVRFSPGAHYLLTCSYD--MKIKLTDLQ  303 (350)
T ss_pred             Cceeeee-----CCCccceeEEEeCCCceEEEEeccc--ceEEEeecc
Confidence            9999999     6788999999999999999999977  888888865

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=9.1e-25  Score=191.01  Aligned_cols=286  Identities=12%  Similarity=0.130  Sum_probs=227.5

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEeeCCC
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTSSCDH  188 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg  188 (501)
                      .+|++|.|+|....+++++.|+.+++|.+... +..++.+.--..+|.+..|.|             +|. .+++++.-.
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-------------~G~~~i~~s~rrk  280 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-------------NGHSVIFTSGRRK  280 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-------------CCceEEEecccce
Confidence            45999999999999999999999999998742 234445555567888888888             777 899999999


Q ss_pred             ceEEec--CCce--eeeccCCC-CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          189 SIRLWW--KGSC--QRCFKGHN-GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       189 ~i~vwd--~~~~--~~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      ..+.||  +.+.  +....++. ..+.....+    +++++|+..+..|.|.+....+++      .+..++ -.+.|..
T Consensus       281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS----hd~~fia~~G~~G~I~lLhakT~e------li~s~K-ieG~v~~  349 (514)
T KOG2055|consen  281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVS----HDSNFIAIAGNNGHIHLLHAKTKE------LITSFK-IEGVVSD  349 (514)
T ss_pred             EEEEeeccccccccccCCCCcccchhheeEec----CCCCeEEEcccCceEEeehhhhhh------hhheee-eccEEee
Confidence            999999  3322  23334444 345566665    889999999999999999999886      466665 5778999


Q ss_pred             EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784          264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  343 (501)
                      +.|+. ++..|++++.+|.|.+||+++...+..                                            +..
T Consensus       350 ~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~r--------------------------------------------f~D  384 (514)
T KOG2055|consen  350 FTFSS-DSKELLASGGTGEVYVWNLRQNSCLHR--------------------------------------------FVD  384 (514)
T ss_pred             EEEec-CCcEEEEEcCCceEEEEecCCcceEEE--------------------------------------------Eee
Confidence            99995 788899999999999999998744322                                            111


Q ss_pred             CCC--cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec--CCCcEEE
Q 010784          344 CKP--ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR--DDLRINI  417 (501)
Q Consensus       344 ~~~--~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs--~dg~i~i  417 (501)
                       .+  .-++++.++++.+||+|++.+ |.|||..+......++|+.++..-...|++|+|+++ +++|.+|  .+..+++
T Consensus       385 -~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL  463 (514)
T KOG2055|consen  385 -DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL  463 (514)
T ss_pred             -cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence             12  235778889999999999999 999998775555557888988888899999999999 8887765  4678999


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      -.+.+......++...  ..-+.++|++|||.|.+|+.|.  +.|.+.+|.+.
T Consensus       464 VHvPS~TVFsNfP~~n--~~vg~vtc~aFSP~sG~lAvGN--e~grv~l~kL~  512 (514)
T KOG2055|consen  464 VHVPSCTVFSNFPTSN--TKVGHVTCMAFSPNSGYLAVGN--EAGRVHLFKLH  512 (514)
T ss_pred             EeccceeeeccCCCCC--CcccceEEEEecCCCceEEeec--CCCceeeEeec
Confidence            9999888877775442  3467799999999999999998  77999999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.6e-25  Score=193.90  Aligned_cols=265  Identities=13%  Similarity=0.203  Sum_probs=210.6

Q ss_pred             EEEeecC-CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee
Q 010784          123 IFSTQGS-SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ  199 (501)
Q Consensus       123 ~~~~~g~-~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~  199 (501)
                      .|++++. ....+.+|.+....+. ....--.++|.|++-+|             +|.+|+.|...|.|++|.  +|..+
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~-~q~~v~Pg~v~al~s~n-------------~G~~l~ag~i~g~lYlWelssG~LL  116 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQV-VQYIVLPGPVHALASSN-------------LGYFLLAGTISGNLYLWELSSGILL  116 (476)
T ss_pred             hheeeecccCccccccccCchhhh-hhhcccccceeeeecCC-------------CceEEEeecccCcEEEEEeccccHH
Confidence            4555443 3568889998864222 22334567899999998             889999998999999998  99999


Q ss_pred             eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCC---CccccccceeeccCCCCceeEEEEeec-CCeEEE
Q 010784          200 RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSS---GKRGQQALKATLYGHEKPIKLMSVAGH-KSFLLV  275 (501)
Q Consensus       200 ~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~  275 (501)
                      ..+.+|-.+|+|+.|+    .||.+|+||+.||.|.+|.+..-   .......+...+..|+-+|+++...+. ...+++
T Consensus       117 ~v~~aHYQ~ITcL~fs----~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~  192 (476)
T KOG0646|consen  117 NVLSAHYQSITCLKFS----DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY  192 (476)
T ss_pred             HHHHhhccceeEEEEe----CCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE
Confidence            9999999999999998    89999999999999999987542   112234578889999999999999864 356899


Q ss_pred             EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC
Q 010784          276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP  355 (501)
Q Consensus       276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~  355 (501)
                      |+|.|.++++||+..+..+...                                            . ....+.+++.+|
T Consensus       193 TaS~D~t~k~wdlS~g~LLlti--------------------------------------------~-fp~si~av~lDp  227 (476)
T KOG0646|consen  193 TASEDRTIKLWDLSLGVLLLTI--------------------------------------------T-FPSSIKAVALDP  227 (476)
T ss_pred             EecCCceEEEEEeccceeeEEE--------------------------------------------e-cCCcceeEEEcc
Confidence            9999999999999888543221                                            1 367789999999


Q ss_pred             CCcEEEEEcCCc-EEEEecCCCC--CC--------CCCCCcccccCccc--CeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784          356 SKSLICTGGIGK-AMTWDIRRSQ--DA--------VKPQPMAELDGHVG--SVTQLHMDPY-KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       356 ~~~~l~~~~~d~-i~iwd~~~~~--~~--------~~~~~~~~~~~h~~--~v~~l~~~~~-~~l~~gs~dg~i~iwd~~  421 (501)
                      -++.+++|+.++ |.+.++....  ..        .....+..+.+|.+  .|+|++++-+ .++++|+.||.|+|||+.
T Consensus       228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  228 AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            999999999888 9888876543  11        12344567788988  9999999999 999999999999999999


Q ss_pred             CcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784          422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT  455 (501)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  455 (501)
                      +.++++++.     ...++|+.+.+.|-.+-++.
T Consensus       308 S~Q~iRtl~-----~~kgpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  308 SKQCIRTLQ-----TSKGPVTNLQINPLERGIIL  336 (476)
T ss_pred             hHHHHHHHh-----hhccccceeEeeccccceec
Confidence            999999993     24678888888765444444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=3.6e-24  Score=189.27  Aligned_cols=333  Identities=14%  Similarity=0.166  Sum_probs=246.8

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      +.|.|++|.++|.. +||..+|.|.||+..+. +..+....|.+.|.++....             +|. |++|+.|..|
T Consensus       247 k~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr-------------~Gt-llSGgKDRki  310 (626)
T KOG2106|consen  247 KFVLCVTFLENGDV-ITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLR-------------DGT-LLSGGKDRKI  310 (626)
T ss_pred             eEEEEEEEcCCCCE-EeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEec-------------Ccc-EeecCccceE
Confidence            44999999999875 58999999999999874 66666669999999999987             555 5569999999


Q ss_pred             EEec-CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784          191 RLWW-KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA  267 (501)
Q Consensus       191 ~vwd-~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  267 (501)
                      ..|| .-+.+  ..+....++|..++=     ..+. |+.|...+.|..=.++++-       .....+|......++.+
T Consensus       311 ~~Wd~~y~k~r~~elPe~~G~iRtv~e-----~~~d-i~vGTtrN~iL~Gt~~~~f-------~~~v~gh~delwgla~h  377 (626)
T KOG2106|consen  311 ILWDDNYRKLRETELPEQFGPIRTVAE-----GKGD-ILVGTTRNFILQGTLENGF-------TLTVQGHGDELWGLATH  377 (626)
T ss_pred             EeccccccccccccCchhcCCeeEEec-----CCCc-EEEeeccceEEEeeecCCc-------eEEEEecccceeeEEcC
Confidence            9998 32322  345567788988872     3333 7777777777766776653       45667899999999999


Q ss_pred             ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCceEeeeccC
Q 010784          268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQKVMTPAIC  344 (501)
Q Consensus       268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~  344 (501)
                      | +.+++++++.|+.+++|+  ..+      ..-.........+..+++.+ .++.|   +...+.|.++...+..... 
T Consensus       378 p-s~~q~~T~gqdk~v~lW~--~~k------~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-  446 (626)
T KOG2106|consen  378 P-SKNQLLTCGQDKHVRLWN--DHK------LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-  446 (626)
T ss_pred             C-ChhheeeccCcceEEEcc--CCc------eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-
Confidence            8 677899999999999999  332      22233455667778888887 44443   4788889999655554444 


Q ss_pred             CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784          345 KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       345 ~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      ..+++.++|+|+|.+||.|+.|+ |+||.+......  ...+...  +..+|+.+.|+++ +++.+-|.|-.|..|....
T Consensus       447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~--y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~  522 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK--YSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE  522 (626)
T ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE--EEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence            88999999999999999999999 999999876543  1222223  3489999999999 9999999999999995433


Q ss_pred             ccccccc--------------ccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc------------------
Q 010784          423 GMLANSL--------------LCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS------------------  470 (501)
Q Consensus       423 ~~~~~~~--------------~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~------------------  470 (501)
                      -+.+...              ... ...+...+..++-+.+.+++++|.  +.|.|+++...                  
T Consensus       523 ~~~~ts~kDvkW~t~~c~lGF~v~-g~s~~t~i~a~~rs~~~~~lA~gd--d~g~v~lf~yPc~s~rA~~he~~ghs~~v  599 (626)
T KOG2106|consen  523 CKQITSVKDVKWATYTCTLGFEVF-GGSDGTDINAVARSHCEKLLASGD--DFGKVHLFSYPCSSPRAPSHEYGGHSSHV  599 (626)
T ss_pred             CcccceecceeeeeeEEEEEEEEe-cccCCchHHHhhhhhhhhhhhccc--cCceEEEEccccCCCcccceeecccccee
Confidence            2222111              000 123456677788888889999887  78999999732                  


Q ss_pred             ------CCccceeecCCCCceeeecc
Q 010784          471 ------NATCPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       471 ------~~~~~~~s~~~d~~~~~w~~  490 (501)
                            .+...+++.+.|.++..|++
T Consensus       600 t~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  600 TNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             EEEEEeeCCceEEecCCCceEEEEEe
Confidence                  33334444448888998875

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=5.7e-25  Score=212.02  Aligned_cols=268  Identities=16%  Similarity=0.198  Sum_probs=215.1

Q ss_pred             CCcceeEEEeeccCcCcccccCCCCcCcEEEEee--CCCceEEecC--------------CceeeeccCCCCceEEEEee
Q 010784          152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSS--CDHSIRLWWK--------------GSCQRCFKGHNGPVSTLSDK  215 (501)
Q Consensus       152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~vwd~--------------~~~~~~~~~h~~~v~~l~~s  215 (501)
                      +...|.+++.+|             ++..++||+  .||.++||+.              .+.+.+...|.+.|+|+.|+
T Consensus        12 ~~~~IfSIdv~p-------------dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S   78 (942)
T KOG0973|consen   12 NEKSIFSIDVHP-------------DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS   78 (942)
T ss_pred             CCeeEEEEEecC-------------CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC
Confidence            345688999988             899999999  9999999961              12334556799999999997


Q ss_pred             ecCCCCCCEEEEeeCCCcEEEEeccCC------------CccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeE
Q 010784          216 LLGDGSGKILASGGEDATVRLWSLSSS------------GKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV  283 (501)
Q Consensus       216 ~~~~~~~~~l~sg~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v  283 (501)
                          ++|.+||+|++|+.|.||.....            .....++....+.+|...|..++|+| ++.++++++.|++|
T Consensus        79 ----~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsV  153 (942)
T KOG0973|consen   79 ----PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSV  153 (942)
T ss_pred             ----CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceE
Confidence                89999999999999999998831            11234667888999999999999999 88899999999999


Q ss_pred             EEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784          284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG  363 (501)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  363 (501)
                      .+||.++.                                            +.+..+.+|.+.|..+.|.|-|+|||+-
T Consensus       154 iiwn~~tF--------------------------------------------~~~~vl~~H~s~VKGvs~DP~Gky~ASq  189 (942)
T KOG0973|consen  154 IIWNAKTF--------------------------------------------ELLKVLRGHQSLVKGVSWDPIGKYFASQ  189 (942)
T ss_pred             EEEccccc--------------------------------------------eeeeeeecccccccceEECCccCeeeee
Confidence            99998876                                            3456788999999999999999999999


Q ss_pred             cCCc-EEEEecCCCCCCCCCCCcccccCc------ccCeEEEEecCC-eEEEEec----CCCcEEEEeCCCccccccccc
Q 010784          364 GIGK-AMTWDIRRSQDAVKPQPMAELDGH------VGSVTQLHMDPY-KIVTGGR----DDLRINIWETDTGMLANSLLC  431 (501)
Q Consensus       364 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~-~~l~~gs----~dg~i~iwd~~~~~~~~~~~~  431 (501)
                      ++|+ |++|++.+....      +.+..+      ...+..+.|+|+ .+|++.-    .-..+.|.+-.+.+.-..|  
T Consensus       190 sdDrtikvwrt~dw~i~------k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L--  261 (942)
T KOG0973|consen  190 SDDRTLKVWRTSDWGIE------KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL--  261 (942)
T ss_pred             cCCceEEEEEcccceee------EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeee--
Confidence            9999 999997764332      222222      345788999999 8887742    2346888888777777788  


Q ss_pred             CCCCCCCcceeeeEeecc-------------c----cEEEEeecCCCceEEEeec----------------------cCC
Q 010784          432 NYPEEADISTGCSAMAVS-------------G----CRIVTASYGEPGLLQFRDF----------------------SNA  472 (501)
Q Consensus       432 ~~~~~~~~~v~~~~~s~~-------------g----~~l~s~~~d~~g~i~~w~~----------------------~~~  472 (501)
                         .+|..++.+++|+|.             .    ..+|+|+  .|+.|.||..                      +++
T Consensus       262 ---vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS--qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspd  336 (942)
T KOG0973|consen  262 ---VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS--QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPD  336 (942)
T ss_pred             ---ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec--CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCC
Confidence               678889999999982             1    1566777  7799999983                      355


Q ss_pred             ccceeecCCCCceeeecccCCC
Q 010784          473 TCPVLKHEVQNDSKFWGPQCYS  494 (501)
Q Consensus       473 ~~~~~s~~~d~~~~~w~~~~~~  494 (501)
                      +..+...|.||++.+..++..+
T Consensus       337 G~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  337 GFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CCeEEEEecCCeEEEEEcchHH
Confidence            6667788999999999887554

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.6e-25  Score=193.26  Aligned_cols=257  Identities=19%  Similarity=0.227  Sum_probs=202.3

Q ss_pred             EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      +...|.+++|++-+|+|.|++.|...+.+++|.+.+| .++..+.+|...|+|+.|+.             ||.+|+|||
T Consensus        77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~-------------dgs~iiTgs  142 (476)
T KOG0646|consen   77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSD-------------DGSHIITGS  142 (476)
T ss_pred             hcccccceeeeecCCCceEEEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeC-------------CCcEEEecC
Confidence            4456788999999999999999999999999999996 89999999999999999998             899999999


Q ss_pred             CCCceEEec-----------CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          186 CDHSIRLWW-----------KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       186 ~dg~i~vwd-----------~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      .||.|.+|.           .-+.+..+..|+-+|+++...+  .+...+|+|+|.|.++++||+..+.      ++.++
T Consensus       143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~--Gg~~~rl~TaS~D~t~k~wdlS~g~------LLlti  214 (476)
T KOG0646|consen  143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGS--GGTNARLYTASEDRTIKLWDLSLGV------LLLTI  214 (476)
T ss_pred             CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecC--CCccceEEEecCCceEEEEEeccce------eeEEE
Confidence            999999995           2345678889999999998752  2245799999999999999999986      34444


Q ss_pred             cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                      . ....+.++++.| .+..++.|+.+|.|.+.++......+....                           .+.++ ..
T Consensus       215 ~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~---------------------------~k~~~-~~  264 (476)
T KOG0646|consen  215 T-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVN---------------------------QKGRH-EE  264 (476)
T ss_pred             e-cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCccccccc---------------------------ccccc-cc
Confidence            3 567889999998 778999999999999998876432111000                           00000 12


Q ss_pred             CceEeeeccCCC--cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEe
Q 010784          335 MQKVMTPAICKP--ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGG  409 (501)
Q Consensus       335 ~~~~~~~~~~~~--~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~g  409 (501)
                      +..+..+.+|.+  .|+|++++-||.+|++|+.|+ +.|||+.+.+++      +++..-.++|+.+.+.|-  ..+..-
T Consensus       265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i------Rtl~~~kgpVtnL~i~~~~~~~~l~~  338 (476)
T KOG0646|consen  265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI------RTLQTSKGPVTNLQINPLERGIILFE  338 (476)
T ss_pred             cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH------HHHhhhccccceeEeeccccceeccc
Confidence            345567778877  999999999999999999999 999999997665      777656789999999776  222222


Q ss_pred             cCCCcEEEEeC
Q 010784          410 RDDLRINIWET  420 (501)
Q Consensus       410 s~dg~i~iwd~  420 (501)
                      ...-.+-.|++
T Consensus       339 ~~~ps~~~~~l  349 (476)
T KOG0646|consen  339 HKQPSLPNPHL  349 (476)
T ss_pred             ccCccCCchHh
Confidence            23344455544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=1.1e-24  Score=190.27  Aligned_cols=297  Identities=14%  Similarity=0.157  Sum_probs=219.8

Q ss_pred             eEEEecCCCCceEEeeCCc--EEEeecCCeeeEEEEecc---cccccceecccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784          104 VCFYSVAKPHDHILLDNND--IFSTQGSSIQNIKIDNFL---SESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE  178 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~--~~~~~g~~d~~i~vw~~~---~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~  178 (501)
                      .........|++++|+|..  .++|+|+.-|.|-+||+.   ....-+..+..|.++|.+|.|+|.            +.
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~------------n~  247 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA------------NT  247 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC------------Ch
Confidence            3455577789999999865  689999999999999994   223456677899999999999996            67


Q ss_pred             cEEEEeeCCCceEEec-CCc---eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          179 NVLVTSSCDHSIRLWW-KGS---CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd-~~~---~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      ..+++.|+||+|++-| .+.   .+..+..-...+..+.|+    .+...++.|..=|...+||+++++.     ....+
T Consensus       248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~----~e~~~vl~~~~~G~f~~iD~R~~~s-----~~~~~  318 (498)
T KOG4328|consen  248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS----AESRSVLFGDNVGNFNVIDLRTDGS-----EYENL  318 (498)
T ss_pred             hheeeeccCceeeeeeecchhhHHHhhcCccceeeeecccc----CCCccEEEeecccceEEEEeecCCc-----cchhh
Confidence            8999999999999998 322   223333345566778886    5556666677777999999999875     46667


Q ss_pred             cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                      .-|...|..++++|....+|+|+|.|++.+|||++......+                                      
T Consensus       319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--------------------------------------  360 (498)
T KOG4328|consen  319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--------------------------------------  360 (498)
T ss_pred             hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC--------------------------------------
Confidence            788899999999999899999999999999999987543211                                      


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc---CcccC--eEEEEecCC-eEEE
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD---GHVGS--VTQLHMDPY-KIVT  407 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~---~h~~~--v~~l~~~~~-~~l~  407 (501)
                        +......|...|.+..|||.+-.|++.+.|. |+|||..-....  ..+..++.   .+..+  .....|.|+ .+++
T Consensus       361 --p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~--~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~  436 (498)
T KOG4328|consen  361 --PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK--DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIV  436 (498)
T ss_pred             --cceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc--CCccceeeccCcccccccchhheeCCCccEEE
Confidence              1122335899999999999866688888777 999998511111  12222222   11122  344579999 9999


Q ss_pred             EecCCCcEEEEeCCCcccccccccCCCCCCCcceee-eEeeccccEEEEeecCCCceEEEee
Q 010784          408 GGRDDLRINIWETDTGMLANSLLCNYPEEADISTGC-SAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       408 ~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      .|-.-..|-|+|-..++.+..+..    .....|.+ ..|+|-+..+++|+. ..|.|+||-
T Consensus       437 vg~~~r~IDv~~~~~~q~v~el~~----P~~~tI~~vn~~HP~~~~~~aG~~-s~Gki~vft  493 (498)
T KOG4328|consen  437 VGRYPRPIDVFDGNGGQMVCELHD----PESSTIPSVNEFHPMRDTLAAGGN-SSGKIYVFT  493 (498)
T ss_pred             EeccCcceeEEcCCCCEEeeeccC----ccccccccceeecccccceeccCC-ccceEEEEe
Confidence            998999999999988887777632    11224443 589999987777764 568888775

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=9.1e-24  Score=193.67  Aligned_cols=336  Identities=13%  Similarity=0.097  Sum_probs=253.4

Q ss_pred             ecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc------ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES------YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      +|..=|+++.|+|.+..|.+++.|+++.+|...+..      -.+-.+.|....-....|+|             +++.+
T Consensus       265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-------------n~~~i  331 (764)
T KOG1063|consen  265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-------------NSNVI  331 (764)
T ss_pred             CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-------------CCCEE
Confidence            344449999999999999999999999999877530      01112223445577777777             88999


Q ss_pred             EEeeCCCceEEec-CC----ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          182 VTSSCDHSIRLWW-KG----SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       182 ~s~~~dg~i~vwd-~~----~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      ++-+..|..++|. ..    .....+.+|.+.|.++.|.    |.|++|++.+.|.+-|+|-.-..+.  .+..+...+-
T Consensus       332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~----psGeflLsvs~DQTTRlFa~wg~q~--~wHEiaRPQi  405 (764)
T KOG1063|consen  332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD----PSGEFLLSVSLDQTTRLFARWGRQQ--EWHEIARPQI  405 (764)
T ss_pred             EEecccCcEEEEeccCccceeeccccccccccceeeeec----CCCCEEEEeccccceeeeccccccc--ceeeeccccc
Confidence            9999999999997 22    3345567999999999996    8999999999999999987663222  2444555667


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC--------------------------------ccccc--------
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS--------------------------------SAVRS--------  296 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~--------------------------------~~~~~--------  296 (501)
                      |...++|+++.+ ....|++|.....+|+|+....                                +....        
T Consensus       406 HGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~  484 (764)
T KOG1063|consen  406 HGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE  484 (764)
T ss_pred             ccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence            889999999996 4778999999999999976410                                00000        


Q ss_pred             ----eecc---------------------------cceecCCCceeeecCCCeEEEEeCC--------cEEEEEcCCCce
Q 010784          297 ----SCCV---------------------------GMTSVPGVPVDMKCHESMLYIASGS--------SVVTIDLRTMQK  337 (501)
Q Consensus       297 ----~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~~~d~~~~~~  337 (501)
                          .+..                           ....+...++++..++++.++++..        .|.+|+..+...
T Consensus       485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~  564 (764)
T KOG1063|consen  485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ  564 (764)
T ss_pred             cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence                0000                           0002233456677777777777653        599999999999


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcE
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRI  415 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i  415 (501)
                      +..+.+|.-.|+.++|||||++|++.+.|+ +.+|........  .......+.|..-|.+..|+|+ .+++++|.|.+|
T Consensus       565 ~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~--e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~V  642 (764)
T KOG1063|consen  565 VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD--EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKV  642 (764)
T ss_pred             hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch--hhhhccccccceEEEEcccCcccceeEEecCCceE
Confidence            999999999999999999999999999999 999998654332  1223447789999999999999 889999999999


Q ss_pred             EEEeCCCc--ccccccccCCCCCCCcceeeeEeecc-----ccEEEEeecCCCceEEEeecc
Q 010784          416 NIWETDTG--MLANSLLCNYPEEADISTGCSAMAVS-----GCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       416 ~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ++|.....  +.+..+.   ...++..|+.+++.|-     +..+++|-  +.|.|.+|.+.
T Consensus       643 kVW~~~~~~d~~i~~~a---~~~~~~aVTAv~~~~~~~~e~~~~vavGl--e~GeI~l~~~~  699 (764)
T KOG1063|consen  643 KVWEEPDLRDKYISRFA---CLKFSLAVTAVAYLPVDHNEKGDVVAVGL--EKGEIVLWRRK  699 (764)
T ss_pred             EEEeccCchhhhhhhhc---hhccCCceeeEEeeccccccccceEEEEe--cccEEEEEecc
Confidence            99999887  4444431   1456788999998872     22556665  88999999955

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.3e-24  Score=200.45  Aligned_cols=281  Identities=20%  Similarity=0.252  Sum_probs=215.4

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      +.|..+-+.|+++++|.++.+++.|+.|++|+.......-.++..|...|.+++..               +++|++|+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---------------s~~f~~~s~   74 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---------------SNHFLTGSE   74 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---------------ccceEEeec
Confidence            45666789999999999999999999999999776424444555588889999874               579999999


Q ss_pred             CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          187 DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       187 dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      +++|.+|.  .+..-..+...+-++++++|+    .+|++++.|+.|-.|++-++.....      ...+++|.++|.++
T Consensus        75 ~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~----g~g~~iaagsdD~~vK~~~~~D~s~------~~~lrgh~apVl~l  144 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDTILARFTLPIRDLAVS----GSGKMIAAGSDDTAVKLLNLDDSSQ------EKVLRGHDAPVLQL  144 (933)
T ss_pred             cceEEEeeCCCCCccceeeeeeccceEEEEe----cCCcEEEeecCceeEEEEeccccch------heeecccCCceeee
Confidence            99999997  444433444556789999996    8999999999999999999998774      78899999999999


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc-
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI-  343 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-  343 (501)
                      .++| .+++|++.+-||.|++||+.++........+..                                     .... 
T Consensus       145 ~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k-------------------------------------~n~~~  186 (933)
T KOG1274|consen  145 SYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK-------------------------------------DNEFI  186 (933)
T ss_pred             eEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCc-------------------------------------ccccc
Confidence            9998 788999999999999999998754332211100                                     0000 


Q ss_pred             CCCcEEEEEEcCCCcEEE-EEcCCcEEEEecCCCCCCCCCCCccccc--CcccCeEEEEecCC-eEEEEecCCCcEEEEe
Q 010784          344 CKPILHSFSIMPSKSLIC-TGGIGKAMTWDIRRSQDAVKPQPMAELD--GHVGSVTQLHMDPY-KIVTGGRDDLRINIWE  419 (501)
Q Consensus       344 ~~~~v~~v~~~~~~~~l~-~~~~d~i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd  419 (501)
                      ....+..++|+|++..++ .+.++.|++|+....+..      ..+.  .+...+..++|+|. ++||+++.||.|.|||
T Consensus       187 ~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~------f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  187 LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ------FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN  260 (933)
T ss_pred             ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh------eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence            134567899999955554 444555999999987654      3333  34445999999999 9999999999999999


Q ss_pred             CCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784          420 TDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR  467 (501)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w  467 (501)
                      +++-.. +.        ....|.+++|.|++.-|-.-.  ..|...+|
T Consensus       261 v~t~~~-~~--------~~~~Vc~~aw~p~~n~it~~~--~~g~~~~~  297 (933)
T KOG1274|consen  261 VDTHER-HE--------FKRAVCCEAWKPNANAITLIT--ALGTLGVS  297 (933)
T ss_pred             cccchh-cc--------ccceeEEEecCCCCCeeEEEe--eccccccC
Confidence            998222 22        256899999999987665544  33444444

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.5e-24  Score=177.36  Aligned_cols=260  Identities=17%  Similarity=0.208  Sum_probs=196.4

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccc---cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE---SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~---~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      |..-|+++.|+..|+.+|+++.|++++|||..++   ..+....+.|.+.|..+.|.+..           -|+.+|+++
T Consensus        12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPE-----------fGqvvA~cS   80 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPE-----------FGQVVATCS   80 (361)
T ss_pred             CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcc-----------ccceEEEEe
Confidence            3344999999999999999999999999996532   34566678999999999997622           589999999


Q ss_pred             CCCceEEecCC-----------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          186 CDHSIRLWWKG-----------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       186 ~dg~i~vwd~~-----------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      .|+++.||...           ....++......|+.+.|.|  ..-|-.|++++.||.+|||+.-.......+.+...+
T Consensus        81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP--~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAP--KHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI  158 (361)
T ss_pred             cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecc--hhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence            99999999621           12345667788999999975  346789999999999999988665433333333333


Q ss_pred             c-------CCCCceeEEEEeec--CCeEEEEEeCC-----CeEEEEECCCCccccceecccceecCCCceeeecCCCeEE
Q 010784          255 Y-------GHEKPIKLMSVAGH--KSFLLVTISKD-----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLY  320 (501)
Q Consensus       255 ~-------~~~~~v~~l~~~~~--~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (501)
                      .       .+..+..|+.|++.  ...+|+.|+.+     +.+.||......                            
T Consensus       159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~----------------------------  210 (361)
T KOG2445|consen  159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG----------------------------  210 (361)
T ss_pred             hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc----------------------------
Confidence            3       46667788999864  24577777765     367777654431                            


Q ss_pred             EEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC----CcEEEEEcCCcEEEEecCCCCC------------C--CCC
Q 010784          321 IASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS----KSLICTGGIGKAMTWDIRRSQD------------A--VKP  382 (501)
Q Consensus       321 ~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~----~~~l~~~~~d~i~iwd~~~~~~------------~--~~~  382 (501)
                                  +....+.++.+|..+|+.++|.|+    ..+||+++.|+|+||.++....            .  .+.
T Consensus       211 ------------rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v  278 (361)
T KOG2445|consen  211 ------------RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPV  278 (361)
T ss_pred             ------------ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccce
Confidence                        122344566789999999999996    4689999999999999984211            0  112


Q ss_pred             CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784          383 QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       383 ~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~  421 (501)
                      +.+..+.+|.+.|..+.|+=. .+|++.+.||.|++|...
T Consensus       279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            345667899999999999988 888888899999999764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=9.4e-25  Score=190.12  Aligned_cols=239  Identities=18%  Similarity=0.222  Sum_probs=190.7

Q ss_pred             CcEEEeecCCeeeEEEEecccc--------------------cccceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          121 NDIFSTQGSSIQNIKIDNFLSE--------------------SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       121 ~~~~~~~g~~d~~i~vw~~~~~--------------------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      .|+|+|.|..+..|.|||+.--                    ++.-..-.+|++.|.++.|+..            -.+.
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~------------~~nV  258 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN------------FRNV  258 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc------------ccee
Confidence            4789999999999999997411                    0111123479999999999874            4689


Q ss_pred             EEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784          181 LVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE  258 (501)
Q Consensus       181 l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  258 (501)
                      |||||.|.+|++||  ++++..++..|++.|.++.|+   +....+|++|+.|++|.+.|.+....      ....-...
T Consensus       259 LaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh---~~~p~~LLsGs~D~~V~l~D~R~~~~------s~~~wk~~  329 (463)
T KOG0270|consen  259 LASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWH---PYEPSVLLSGSYDGTVALKDCRDPSN------SGKEWKFD  329 (463)
T ss_pred             EEecCCCceEEEEEcCCCCcceehhhcCCceeEEEec---CCCceEEEeccccceEEeeeccCccc------cCceEEec
Confidence            99999999999999  999999999999999999998   46778999999999999999996432      22223356


Q ss_pred             CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784          259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV  338 (501)
Q Consensus       259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  338 (501)
                      +.|-.++|.|.....++++..||+|+-+|+|..                                           ++++
T Consensus       330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-------------------------------------------~~~v  366 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-------------------------------------------GKPV  366 (463)
T ss_pred             cceEEEEecCCCceeEEEecCCceEEeeecCCC-------------------------------------------CCce
Confidence            788999999989999999999999999999975                                           2456


Q ss_pred             eeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCc
Q 010784          339 MTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLR  414 (501)
Q Consensus       339 ~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~  414 (501)
                      .+++.|.++|.++++++. ..++++++.++ +++|++......    .+..-.-.-+...|.++.|+  .+++.|+..+.
T Consensus       367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~----~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~  442 (463)
T KOG0270|consen  367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK----SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV  442 (463)
T ss_pred             eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc----ccccccccccceeecccCCCcceEEEecCccce
Confidence            788899999999999986 66888999999 999999865432    11111111234677788888  77788888889


Q ss_pred             EEEEeCCCccccc
Q 010784          415 INIWETDTGMLAN  427 (501)
Q Consensus       415 i~iwd~~~~~~~~  427 (501)
                      ++|||+.+...+.
T Consensus       443 ~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  443 LRVWDIFTNSPVR  455 (463)
T ss_pred             EEEeecccChhHH
Confidence            9999998876554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.2e-23  Score=175.06  Aligned_cols=261  Identities=14%  Similarity=0.114  Sum_probs=196.9

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      ..|+.|.|++....|+.++-||.+++|+....  .++..-.|..++.+++|.+              ...+++|+.||.|
T Consensus        14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d--------------~~~~~~G~~dg~v   77 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFAD--------------ESTIVTGGLDGQV   77 (323)
T ss_pred             hceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccC--------------CceEEEeccCceE
Confidence            34999999999999999999999999999863  3444447899999999985              5789999999999


Q ss_pred             EEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784          191 RLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH  269 (501)
Q Consensus       191 ~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  269 (501)
                      +++| .......+..|..+|.|+.++    +....+++|+.|++|++||.+...      ....+. ....|.++...  
T Consensus        78 r~~Dln~~~~~~igth~~~i~ci~~~----~~~~~vIsgsWD~~ik~wD~R~~~------~~~~~d-~~kkVy~~~v~--  144 (323)
T KOG1036|consen   78 RRYDLNTGNEDQIGTHDEGIRCIEYS----YEVGCVISGSWDKTIKFWDPRNKV------VVGTFD-QGKKVYCMDVS--  144 (323)
T ss_pred             EEEEecCCcceeeccCCCceEEEEee----ccCCeEEEcccCccEEEEeccccc------cccccc-cCceEEEEecc--
Confidence            9999 555556667799999999997    677899999999999999998643      233333 34478888774  


Q ss_pred             CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC--CeEEEEe-CCcEEEEEcCCC----ceEeeec
Q 010784          270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE--SMLYIAS-GSSVVTIDLRTM----QKVMTPA  342 (501)
Q Consensus       270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~i~~~d~~~~----~~~~~~~  342 (501)
                       ++.|+.|+.|..|.+||+++.....+.   ..........++.+.|  .+.++.+ .+.+.+=.+...    +....|+
T Consensus       145 -g~~LvVg~~~r~v~iyDLRn~~~~~q~---reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk  220 (323)
T KOG1036|consen  145 -GNRLVVGTSDRKVLIYDLRNLDEPFQR---RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK  220 (323)
T ss_pred             -CCEEEEeecCceEEEEEcccccchhhh---ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence             568899999999999999987643311   1112233334444444  4444443 455555444333    3345555


Q ss_pred             cCC---------CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec
Q 010784          343 ICK---------PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR  410 (501)
Q Consensus       343 ~~~---------~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs  410 (501)
                      .|.         .+|++++|+|-...|++|+.|+ |.+||+.+.+.+      ..+......|.+++|+.+ ..||.++
T Consensus       221 CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl------~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  221 CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL------KQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh------hhccCCCCceEEEEeccCCCeEEEEe
Confidence            552         3689999999999999999999 999999997655      777776778999999999 7777764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=5.4e-24  Score=193.41  Aligned_cols=294  Identities=18%  Similarity=0.197  Sum_probs=209.9

Q ss_pred             CCcEEEeecCCeeeEEEEecccc-----cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec
Q 010784          120 NNDIFSTQGSSIQNIKIDNFLSE-----SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW  194 (501)
Q Consensus       120 ~~~~~~~~g~~d~~i~vw~~~~~-----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  194 (501)
                      ....+|+.+..+|.|.++|....     .+.++.+..|...|..+.|.|             ....|++++.|.++++||
T Consensus        62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-------------ge~~lVsasGDsT~r~Wd  128 (720)
T KOG0321|consen   62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-------------GESLLVSASGDSTIRPWD  128 (720)
T ss_pred             CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-------------CceeEEEccCCceeeeee
Confidence            45677889999999999997652     122456678999999999999             578999999999999999


Q ss_pred             --CCceeee--ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc---------------c---cc---cc
Q 010784          195 --KGSCQRC--FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK---------------R---GQ---QA  249 (501)
Q Consensus       195 --~~~~~~~--~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~---------------~---~~---~~  249 (501)
                        ..+++..  +.+|++.|.+++|++   .+...|++|+.||.|.|||++-...               .   ..   .+
T Consensus       129 vk~s~l~G~~~~~GH~~SvkS~cf~~---~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k  205 (720)
T KOG0321|consen  129 VKTSRLVGGRLNLGHTGSVKSECFMP---TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK  205 (720)
T ss_pred             eccceeecceeecccccccchhhhcc---CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence              5555555  889999999999984   5667999999999999999975431               0   00   00


Q ss_pred             ceeeccCCCCce----eEEEEeecCCeEEEEEeC-CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784          250 LKATLYGHEKPI----KLMSVAGHKSFLLVTISK-DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       250 ~~~~~~~~~~~v----~~l~~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (501)
                      -+..-+.+...|    +.+.|-  |...|++++. |+.|+|||++.............                      
T Consensus       206 r~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~----------------------  261 (720)
T KOG0321|consen  206 RIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS----------------------  261 (720)
T ss_pred             cccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcc----------------------
Confidence            111222344334    444443  7778888887 99999999998754332211111                      


Q ss_pred             CcEEEEEcCCCceEeeeccC---CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeE--EE
Q 010784          325 SSVVTIDLRTMQKVMTPAIC---KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVT--QL  398 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~---~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l  398 (501)
                                    ..+..|   ...+.++.....|.++.+.+.|+ |++|++.....    .++..+.++...-.  .-
T Consensus       262 --------------~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks  323 (720)
T KOG0321|consen  262 --------------DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKS  323 (720)
T ss_pred             --------------cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc----CchhhccCcccceeeeee
Confidence                          111112   33467777777777777666666 99999998653    35566665533211  22


Q ss_pred             EecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc-cEEEEeecCCCceEEEeeccCCccce
Q 010784          399 HMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQFRDFSNATCPV  476 (501)
Q Consensus       399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~~w~~~~~~~~~  476 (501)
                      ..+|+ .++++|+.|...++|.+.+.+.-..+.    .+|...|++++|.|.. .-+++++  +|..+++|++.++....
T Consensus       324 ~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~Ght~eVt~V~w~pS~~t~v~TcS--dD~~~kiW~l~~~l~e~  397 (720)
T KOG0321|consen  324 ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----LGHTREVTTVRWLPSATTPVATCS--DDFRVKIWRLSNGLEEI  397 (720)
T ss_pred             ecCCCCceEeccCCCcceeeeeecCccCChhhh----hCcceEEEEEeeccccCCCceeec--cCcceEEEeccCchhhc
Confidence            46888 999999999999999999876554443    6788999999998854 4566666  78999999997766544


Q ss_pred             e
Q 010784          477 L  477 (501)
Q Consensus       477 ~  477 (501)
                      .
T Consensus       398 ~  398 (720)
T KOG0321|consen  398 Y  398 (720)
T ss_pred             c
Confidence            3

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.7e-23  Score=174.51  Aligned_cols=291  Identities=16%  Similarity=0.117  Sum_probs=213.4

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      .+|+.|++.|.++|.|..+|.+.|||+.+ ..+.+.+.+|..+|++++||+             +|+.|+|+|.|..|.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~-------------dgr~LltsS~D~si~l   91 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSAHVRPITSLCWSR-------------DGRKLLTSSRDWSIKL   91 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhccccceeEEEecC-------------CCCEeeeecCCceeEE
Confidence            78999999999999999999999999999 589999999999999999999             8999999999999999


Q ss_pred             ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec-cCCCC-ceeEEEEee
Q 010784          193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL-YGHEK-PIKLMSVAG  268 (501)
Q Consensus       193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~-~v~~l~~~~  268 (501)
                      ||  .|.+++.++ ..++|....|+|   .+.+.+++.-.+..-.+-++..+..    .++..- .+... .-.+..|.+
T Consensus        92 wDl~~gs~l~rir-f~spv~~~q~hp---~k~n~~va~~~~~sp~vi~~s~~~h----~~Lp~d~d~dln~sas~~~fdr  163 (405)
T KOG1273|consen   92 WDLLKGSPLKRIR-FDSPVWGAQWHP---RKRNKCVATIMEESPVVIDFSDPKH----SVLPKDDDGDLNSSASHGVFDR  163 (405)
T ss_pred             EeccCCCceeEEE-ccCccceeeecc---ccCCeEEEEEecCCcEEEEecCCce----eeccCCCccccccccccccccC
Confidence            99  788888776 578999999984   4455555555555556666654321    011100 01111 111224554


Q ss_pred             cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC-CCc
Q 010784          269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC-KPI  347 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~  347 (501)
                       .++++++|...|.+.++|..+.+.+...                                            +.. ...
T Consensus       164 -~g~yIitGtsKGkllv~~a~t~e~vas~--------------------------------------------rits~~~  198 (405)
T KOG1273|consen  164 -RGKYIITGTSKGKLLVYDAETLECVASF--------------------------------------------RITSVQA  198 (405)
T ss_pred             -CCCEEEEecCcceEEEEecchheeeeee--------------------------------------------eechhee
Confidence             7889999999999999999887543322                                            211 256


Q ss_pred             EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC---CCCCCcccccC--cccCeEEEEecCC-eEEEE-ecCCCcEEEEe
Q 010784          348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA---VKPQPMAELDG--HVGSVTQLHMDPY-KIVTG-GRDDLRINIWE  419 (501)
Q Consensus       348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~---~~~~~~~~~~~--h~~~v~~l~~~~~-~~l~~-gs~dg~i~iwd  419 (501)
                      |.++.++..|++|+.-+.|+ ||.|+++.-...   ...++.+.++.  ....=.+++|+.+ .++++ .+....++||.
T Consensus       199 IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  199 IKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE  278 (405)
T ss_pred             eeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence            78899999999999999999 999998742111   01233333332  1223456788888 55444 45667899999


Q ss_pred             CCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcccee
Q 010784          420 TDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL  477 (501)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~  477 (501)
                      ...|.+++.+.+..    ......+.|+|-...|++-   ..|.+++|......+..+
T Consensus       279 ~~~GsLVKILhG~k----gE~l~DV~whp~rp~i~si---~sg~v~iw~~~~~enwsa  329 (405)
T KOG1273|consen  279 KSIGSLVKILHGTK----GEELLDVNWHPVRPIIASI---ASGVVYIWAVVQVENWSA  329 (405)
T ss_pred             cCCcceeeeecCCc----hhheeecccccceeeeeec---cCCceEEEEeecccchhh
Confidence            99999999994322    2457788999999888887   458999999877666544

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=3.5e-24  Score=193.14  Aligned_cols=300  Identities=15%  Similarity=0.180  Sum_probs=224.9

Q ss_pred             eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCc----
Q 010784          102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT----  177 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~----  177 (501)
                      ....|..|...|.||..++.|.++|+|+.||+++||.+.+| .+++++.- .+.|.||+|+|.+..++++++..-.    
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-Rcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-RCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-eEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEe
Confidence            34567778888999999999999999999999999999997 66666543 3579999999987766666554211    


Q ss_pred             -------------CcEEEEe----eCCCceEEecC------CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---
Q 010784          178 -------------ENVLVTS----SCDHSIRLWWK------GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---  231 (501)
Q Consensus       178 -------------~~~l~s~----~~dg~i~vwd~------~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---  231 (501)
                                   ...|+++    ..++++..|..      ...+...-.|...|..+.|+    ..|.||++...+   
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH----rkGDYlatV~~~~~~  545 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH----RKGDYLATVMPDSGN  545 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee----cCCceEEEeccCCCc
Confidence                         1122222    23556777851      11133344588999999998    899999987654   


Q ss_pred             CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee
Q 010784          232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD  311 (501)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  311 (501)
                      ..|.|.++.....      ...+....+.|.++.|+|... +|+.++. ..|++||+.....+.                
T Consensus       546 ~~VliHQLSK~~s------Q~PF~kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqelvK----------------  601 (733)
T KOG0650|consen  546 KSVLIHQLSKRKS------QSPFRKSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQELVK----------------  601 (733)
T ss_pred             ceEEEEecccccc------cCchhhcCCceeEEEecCCCc-eEEEEec-cceEEEehhHHHHHH----------------
Confidence            4788999987653      445555667889999998544 5555554 579999987654332                


Q ss_pred             eecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC
Q 010784          312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG  390 (501)
Q Consensus       312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  390 (501)
                                                  .+......|.+++++|.|.-|+.|+.++ +..+|+.-..     ++.+++..
T Consensus       602 ----------------------------kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss-----kPyk~lr~  648 (733)
T KOG0650|consen  602 ----------------------------KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS-----KPYKTLRL  648 (733)
T ss_pred             ----------------------------HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc-----chhHHhhh
Confidence                                        2333456789999999999999999888 9999998764     45789999


Q ss_pred             cccCeEEEEecCC-eEEEEecCCCcEEEEeCCC---------cccccccccCCCCCCCcceeeeEeeccccEEEEeecCC
Q 010784          391 HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT---------GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE  460 (501)
Q Consensus       391 h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~  460 (501)
                      |...+++++|++. .++++|+.||++.|+.-.-         --++..+.+|... ....|..+.|+|...+|++++  .
T Consensus       649 H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~-~~~gVLd~~wHP~qpWLfsAG--A  725 (733)
T KOG0650|consen  649 HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT-NDLGVLDTIWHPRQPWLFSAG--A  725 (733)
T ss_pred             hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee-cccceEeecccCCCceEEecC--C
Confidence            9999999999999 9999999999999985321         1234555444322 344588889999999999999  5


Q ss_pred             CceEEEe
Q 010784          461 PGLLQFR  467 (501)
Q Consensus       461 ~g~i~~w  467 (501)
                      ||+|++|
T Consensus       726 d~tirlf  732 (733)
T KOG0650|consen  726 DGTIRLF  732 (733)
T ss_pred             CceEEee
Confidence            6999998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=2e-24  Score=178.28  Aligned_cols=218  Identities=18%  Similarity=0.231  Sum_probs=172.9

Q ss_pred             cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc------cccc---eeeccCCCCceeEEEEeecCCeE
Q 010784          203 KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG------QQAL---KATLYGHEKPIKLMSVAGHKSFL  273 (501)
Q Consensus       203 ~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~------~~~~---~~~~~~~~~~v~~l~~~~~~~~~  273 (501)
                      ..|.+.|+++..-   ...|+++++|+.||.|.+||++......      +..+   .....+|.-.|..+.|-|.+..+
T Consensus        40 r~HgGsvNsL~id---~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   40 RPHGGSVNSLQID---LTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             ccCCCccceeeec---cccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            4588999999876   4689999999999999999998654210      0111   12235688899999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEE
Q 010784          274 LVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSI  353 (501)
Q Consensus       274 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~  353 (501)
                      +.+++.|.+++|||..+.+...                                            .|. .++.|++-++
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~--------------------------------------------~F~-me~~VYsham  151 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAV--------------------------------------------DFK-MEGKVYSHAM  151 (397)
T ss_pred             eecccccceEEEeecccceeeE--------------------------------------------Eee-cCceeehhhc
Confidence            9999999999999998875321                                            111 2566777777


Q ss_pred             cCC---CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc-ccc
Q 010784          354 MPS---KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG-MLA  426 (501)
Q Consensus       354 ~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~-~~~  426 (501)
                      +|-   -.++|+|..|- |++-|+.++...      +++.+|.+.|.++.|+|.  .++++|+.||.|++||++.. .+.
T Consensus       152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~s------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf  225 (397)
T KOG4283|consen  152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFS------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF  225 (397)
T ss_pred             ChhhhcceEEEEecCCCcEEEEeccCCcce------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee
Confidence            773   45788888888 999999998776      999999999999999998  88999999999999999864 344


Q ss_pred             cccccCC---------CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccce
Q 010784          427 NSLLCNY---------PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPV  476 (501)
Q Consensus       427 ~~~~~~~---------~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~  476 (501)
                      .++..|.         ...|.+.+++++|+.||.++++.+  -|..+++|+...+.+-+
T Consensus       226 ~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g--td~r~r~wn~~~G~ntl  282 (397)
T KOG4283|consen  226 RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG--TDDRIRVWNMESGRNTL  282 (397)
T ss_pred             EEeecccCccCccccccccccceeeeeeecccchhhhhcc--CccceEEeecccCcccc
Confidence            4443332         346788899999999999999999  45999999988766543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.5e-24  Score=177.19  Aligned_cols=265  Identities=16%  Similarity=0.148  Sum_probs=189.8

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc----ccceecccCCcceeEEEeeccCcC------------
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES----YYRATLSDHKARITCMRLFPLHET------------  167 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~----~~~~~~~~h~~~V~~~~~~~~~~~------------  167 (501)
                      ..+.+|...|++++|+.||+++|+.+.|++|++|+++.-.    ++++. .-..+.-+.+.|.|+-..            
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            5677899999999999999999999999999999986410    11111 001122344555554431            


Q ss_pred             ------------------------------cccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeee
Q 010784          168 ------------------------------SLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKL  216 (501)
Q Consensus       168 ------------------------------~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~  216 (501)
                                                    ++......-++.+|++++.|..|.+|+ .|+.+..+......-+..+.| 
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavS-  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVS-  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeC-
Confidence                                          111112223678999999999999999 888888887666666667776 


Q ss_pred             cCCCCCCEEEEeeCCCcEEEEeccCCC--ccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccc
Q 010784          217 LGDGSGKILASGGEDATVRLWSLSSSG--KRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV  294 (501)
Q Consensus       217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~  294 (501)
                         |+|+++++++.--.|++|.+--.+  ...+...+..+++|...|..++|++ +...+++.|.||++++||+.-.-..
T Consensus       238 ---P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  238 ---PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             ---CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEec
Confidence               899999999999999999864322  1122334567899999999999997 7889999999999999998743221


Q ss_pred             cc----eec--ccceecCCCceee--ecCCCeEEEEeCCcEEEEEcCCCceEeeec-cCCCcEEEEEEcCCCcEEEEEcC
Q 010784          295 RS----SCC--VGMTSVPGVPVDM--KCHESMLYIASGSSVVTIDLRTMQKVMTPA-ICKPILHSFSIMPSKSLICTGGI  365 (501)
Q Consensus       295 ~~----~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~  365 (501)
                      .+    ...  .......+.+..+  ..+.+.+.++.++.++++..++++....+. .|...|.+++|+++|++++++++
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD  393 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence            11    000  0111223344444  444555666677899999999988776554 58999999999999999999998


Q ss_pred             CcEEEEecC
Q 010784          366 GKAMTWDIR  374 (501)
Q Consensus       366 d~i~iwd~~  374 (501)
                      ..++++.-.
T Consensus       394 r~vrv~~nt  402 (420)
T KOG2096|consen  394 RYVRVIRNT  402 (420)
T ss_pred             eeeeeecCC
Confidence            878877633

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6e-23  Score=194.32  Aligned_cols=246  Identities=15%  Similarity=0.175  Sum_probs=197.7

Q ss_pred             ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CC-ceeeeccCCCCceEEEEeeecCCCCCCEEE
Q 010784          150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KG-SCQRCFKGHNGPVSTLSDKLLGDGSGKILA  226 (501)
Q Consensus       150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~-~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~  226 (501)
                      ..|+..-+.|+|.|             +|.+|++++.||.|++|+  .. ....++..+...|.+++.      .+.+|+
T Consensus        10 yaht~G~t~i~~d~-------------~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~------~s~~f~   70 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP-------------DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC------YSNHFL   70 (933)
T ss_pred             hhccCceEEEEEcC-------------CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee------cccceE
Confidence            47888999999999             889999999999999998  22 333444448888999884      566999


Q ss_pred             EeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecC
Q 010784          227 SGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVP  306 (501)
Q Consensus       227 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~  306 (501)
                      +|+.+++|.+|.+..+..      -..+...+-++++++++. ++++++.||.|-.|++.++.+..              
T Consensus        71 ~~s~~~tv~~y~fps~~~------~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s--------------  129 (933)
T KOG1274|consen   71 TGSEQNTVLRYKFPSGEE------DTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSS--------------  129 (933)
T ss_pred             EeeccceEEEeeCCCCCc------cceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccc--------------
Confidence            999999999999998874      334555677899999995 88999999999999999987763              


Q ss_pred             CCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCc
Q 010784          307 GVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPM  385 (501)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~  385 (501)
                                                    ....+++|.++|.++.|+|++++||+.+-|| |++||+.++.......-+
T Consensus       130 ------------------------------~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v  179 (933)
T KOG1274|consen  130 ------------------------------QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV  179 (933)
T ss_pred             ------------------------------hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence                                          2356788999999999999999999999888 999999987654111111


Q ss_pred             ccccC-c-ccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCC
Q 010784          386 AELDG-H-VGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP  461 (501)
Q Consensus       386 ~~~~~-h-~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~  461 (501)
                      ..-.. . ...+..++|+|+  .+++. +.|+.|++|+..+++....+..   ..+...+..+.|+|.|+|||+++  -+
T Consensus       180 ~k~n~~~~s~i~~~~aW~Pk~g~la~~-~~d~~Vkvy~r~~we~~f~Lr~---~~~ss~~~~~~wsPnG~YiAAs~--~~  253 (933)
T KOG1274|consen  180 DKDNEFILSRICTRLAWHPKGGTLAVP-PVDNTVKVYSRKGWELQFKLRD---KLSSSKFSDLQWSPNGKYIAAST--LD  253 (933)
T ss_pred             CccccccccceeeeeeecCCCCeEEee-ccCCeEEEEccCCceeheeecc---cccccceEEEEEcCCCcEEeeec--cC
Confidence            11111 1 345678899999  56655 5899999999999999988864   23344589999999999999999  56


Q ss_pred             ceEEEeeccC
Q 010784          462 GLLQFRDFSN  471 (501)
Q Consensus       462 g~i~~w~~~~  471 (501)
                      |.|.|||+.+
T Consensus       254 g~I~vWnv~t  263 (933)
T KOG1274|consen  254 GQILVWNVDT  263 (933)
T ss_pred             CcEEEEeccc
Confidence            9999999984

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=9.9e-24  Score=179.97  Aligned_cols=248  Identities=22%  Similarity=0.331  Sum_probs=187.3

Q ss_pred             cCCCCceEEeeC--CcEEEeecCCeeeEEEEeccc---------------ccccceecccCCcceeEEEeeccCcCcccc
Q 010784          109 VAKPHDHILLDN--NDIFSTQGSSIQNIKIDNFLS---------------ESYYRATLSDHKARITCMRLFPLHETSLFR  171 (501)
Q Consensus       109 ~~~~i~~~~~~~--~~~~~~~g~~d~~i~vw~~~~---------------~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~  171 (501)
                      +.+.++.+..++  +..++|+=+..|.|+||++..               ..+++.++.+|.+.=+.++|||.       
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~-------  222 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI-------  222 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc-------
Confidence            444577777775  456777888899999999742               25678889999999999999994       


Q ss_pred             cCCCCcCcEEEEeeCCCceEEec--CCce---eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc
Q 010784          172 SEPQRTENVLVTSSCDHSIRLWW--KGSC---QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG  246 (501)
Q Consensus       172 ~~~~~~~~~l~s~~~dg~i~vwd--~~~~---~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  246 (501)
                           ....|+||..-+.|++|.  ++.-   ...|.+|+..|-.++|||   .....|+||+.||+|+|||++.+.+  
T Consensus       223 -----~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSp---tE~~vfaScS~DgsIrIWDiRs~~~--  292 (440)
T KOG0302|consen  223 -----KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSP---TEDGVFASCSCDGSIRIWDIRSGPK--  292 (440)
T ss_pred             -----cccccccCccccceEeeeeccCceeecCccccccccchhhhccCC---ccCceEEeeecCceEEEEEecCCCc--
Confidence                 345689999999999997  3322   245678999999999995   5667999999999999999998753  


Q ss_pred             cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784          247 QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS  326 (501)
Q Consensus       247 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (501)
                        ......+.|.+.|+.|.|+. ...+|++|+.||+++|||+++-+.                                 
T Consensus       293 --~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~---------------------------------  336 (440)
T KOG0302|consen  293 --KAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKS---------------------------------  336 (440)
T ss_pred             --cceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccC---------------------------------
Confidence              12233488999999999996 445999999999999999998642                                 


Q ss_pred             EEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCC-------------CCCCCcccccCc
Q 010784          327 VVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDA-------------VKPQPMAELDGH  391 (501)
Q Consensus       327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~-------------~~~~~~~~~~~h  391 (501)
                              ++++..++-|..+|+++.|+|. ...|++++.|. |.|||+......             ..++.+...++ 
T Consensus       337 --------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-  407 (440)
T KOG0302|consen  337 --------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-  407 (440)
T ss_pred             --------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-
Confidence                    3566788889999999999996 45666666666 999999754321             00111222222 


Q ss_pred             ccCeEEEEecCC--eEEEEecCCCcEEEEe
Q 010784          392 VGSVTQLHMDPY--KIVTGGRDDLRINIWE  419 (501)
Q Consensus       392 ~~~v~~l~~~~~--~~l~~gs~dg~i~iwd  419 (501)
                      +..+..+.|++.  .++++.+.|| +.||-
T Consensus       408 Qke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  408 QKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             hhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            346788999988  6666666888 55554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=4e-25  Score=203.45  Aligned_cols=229  Identities=17%  Similarity=0.318  Sum_probs=203.3

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      ..|...+.|+.+-..++.+++|+.|..+.+|.+... ..+..|.+|..+|.++.|++             +..+|++|+.
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~-------------~E~Llaagsa   90 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-NAITSLTGHESPIESLTFDT-------------SERLLAAGSA   90 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCC-chhheeeccCCcceeeecCc-------------chhhhccccc
Confidence            345666888888888899999999999999998874 56667999999999999998             7899999999


Q ss_pred             CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          187 DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       187 dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      +|+|++||  ..+.++++.+|...+.++.|+    |-+.++++|+.|+.+++||.+..+      +...+.+|...|..+
T Consensus        91 sgtiK~wDleeAk~vrtLtgh~~~~~sv~f~----P~~~~~a~gStdtd~~iwD~Rk~G------c~~~~~s~~~vv~~l  160 (825)
T KOG0267|consen   91 SGTIKVWDLEEAKIVRTLTGHLLNITSVDFH----PYGEFFASGSTDTDLKIWDIRKKG------CSHTYKSHTRVVDVL  160 (825)
T ss_pred             CCceeeeehhhhhhhhhhhccccCcceeeec----cceEEeccccccccceehhhhccC------ceeeecCCcceeEEE
Confidence            99999999  788889999999999999997    789999999999999999999766      589999999999999


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC  344 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  344 (501)
                      +|+| ++.+++.|+.|..+++||...++.                                            ...|..|
T Consensus       161 ~lsP-~Gr~v~~g~ed~tvki~d~~agk~--------------------------------------------~~ef~~~  195 (825)
T KOG0267|consen  161 RLSP-DGRWVASGGEDNTVKIWDLTAGKL--------------------------------------------SKEFKSH  195 (825)
T ss_pred             eecC-CCceeeccCCcceeeeeccccccc--------------------------------------------ccccccc
Confidence            9998 899999999999999999987743                                            3466779


Q ss_pred             CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec
Q 010784          345 KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR  410 (501)
Q Consensus       345 ~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs  410 (501)
                      .+.+.++.|+|..-++++|+.|. +++||+++.+.+      .........|.+++|+|+ ..+.+|.
T Consensus       196 e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I------~s~~~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  196 EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI------SSGKPETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             cccccccccCchhhhhccCCCCceeeeeccceeEEe------eccCCccCCceeeeecCCceeeecCc
Confidence            99999999999999999999999 999999986543      555566788999999999 8888863

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=1.2e-23  Score=179.53  Aligned_cols=213  Identities=20%  Similarity=0.315  Sum_probs=174.4

Q ss_pred             eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC------------------CceeeeccCCCCc
Q 010784          147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK------------------GSCQRCFKGHNGP  208 (501)
Q Consensus       147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~------------------~~~~~~~~~h~~~  208 (501)
                      .....|.+.++-+.-++.+           +..+.++=+..|.|+|||.                  .+.+.++.+|...
T Consensus       145 ~~~i~h~g~~NRvr~~~~~-----------~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E  213 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLG-----------NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE  213 (440)
T ss_pred             ccccccccccceeeecccC-----------CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc
Confidence            3345788889888888753           5567788888999999972                  1345677889999


Q ss_pred             eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEEC
Q 010784          209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDT  288 (501)
Q Consensus       209 v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~  288 (501)
                      =..++|||   .....|++|..-+.|++|...++.-.   .-...+.+|+..|..++|+|.....|++||-||+|+|||+
T Consensus       214 Gy~LdWSp---~~~g~LlsGDc~~~I~lw~~~~g~W~---vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi  287 (440)
T KOG0302|consen  214 GYGLDWSP---IKTGRLLSGDCVKGIHLWEPSTGSWK---VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI  287 (440)
T ss_pred             ceeeeccc---ccccccccCccccceEeeeeccCcee---ecCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence            99999984   33446889999999999999886531   1124466799999999999988999999999999999999


Q ss_pred             CCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-
Q 010784          289 STSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-  367 (501)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-  367 (501)
                      +.+...                                          .....+.|.+.|+-|.|+....+|++|++++ 
T Consensus       288 Rs~~~~------------------------------------------~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt  325 (440)
T KOG0302|consen  288 RSGPKK------------------------------------------AAVSTKAHNSDVNVISWNRREPLLASGGDDGT  325 (440)
T ss_pred             cCCCcc------------------------------------------ceeEeeccCCceeeEEccCCcceeeecCCCce
Confidence            987431                                          1122367899999999999888999999999 


Q ss_pred             EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCC
Q 010784          368 AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       368 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~  421 (501)
                      ++|||+++.+.   ..++.+++.|..+|++|.|+|.  ..+++++.|..|.+||+.
T Consensus       326 ~~iwDLR~~~~---~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  326 LSIWDLRQFKS---GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             EEEEEhhhccC---CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            99999998765   4788999999999999999998  777777899999999985

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=4.3e-22  Score=183.10  Aligned_cols=266  Identities=13%  Similarity=0.051  Sum_probs=188.5

Q ss_pred             EEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE-EEeeCCCceEEec--CCcee
Q 010784          123 IFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL-VTSSCDHSIRLWW--KGSCQ  199 (501)
Q Consensus       123 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vwd--~~~~~  199 (501)
                      ..+++++.|+.+++||..++ +....+.+|.. +.+++|+|             ++..+ ++++.++.|++||  .++.+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~-~~~~~~~~~~~-~~~l~~~~-------------dg~~l~~~~~~~~~v~~~d~~~~~~~   66 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATL-EVTRTFPVGQR-PRGITLSK-------------DGKLLYVCASDSDTIQVIDLATGEVI   66 (300)
T ss_pred             cEEEEecCCCEEEEEECCCC-ceEEEEECCCC-CCceEECC-------------CCCEEEEEECCCCeEEEEECCCCcEE
Confidence            56788999999999999885 67777776644 67899998             67765 6777899999999  55566


Q ss_pred             eeccCCCCceEEEEeeecCCCCCCEEEE-eeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe
Q 010784          200 RCFKGHNGPVSTLSDKLLGDGSGKILAS-GGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS  278 (501)
Q Consensus       200 ~~~~~h~~~v~~l~~s~~~~~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s  278 (501)
                      ..+..+.. +..++|+    ++++.+++ ++.++.|++||+.+..      .+..+.. ...+.+++++| ++..+++++
T Consensus        67 ~~~~~~~~-~~~~~~~----~~g~~l~~~~~~~~~l~~~d~~~~~------~~~~~~~-~~~~~~~~~~~-dg~~l~~~~  133 (300)
T TIGR03866        67 GTLPSGPD-PELFALH----PNGKILYIANEDDNLVTVIDIETRK------VLAEIPV-GVEPEGMAVSP-DGKIVVNTS  133 (300)
T ss_pred             EeccCCCC-ccEEEEC----CCCCEEEEEcCCCCeEEEEECCCCe------EEeEeeC-CCCcceEEECC-CCCEEEEEe
Confidence            66655443 4677886    77776654 4568999999998764      2444432 33467899998 777888877


Q ss_pred             CCC-eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784          279 KDS-KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK  357 (501)
Q Consensus       279 ~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~  357 (501)
                      .++ .+.+||.++++...                                            ... ....+..++|+|++
T Consensus       134 ~~~~~~~~~d~~~~~~~~--------------------------------------------~~~-~~~~~~~~~~s~dg  168 (300)
T TIGR03866       134 ETTNMAHFIDTKTYEIVD--------------------------------------------NVL-VDQRPRFAEFTADG  168 (300)
T ss_pred             cCCCeEEEEeCCCCeEEE--------------------------------------------EEE-cCCCccEEEECCCC
Confidence            764 46677877653211                                            111 12234678999999


Q ss_pred             cEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCc-------ccCeEEEEecCC-eE-EEEecCCCcEEEEeCCCcccc
Q 010784          358 SLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGH-------VGSVTQLHMDPY-KI-VTGGRDDLRINIWETDTGMLA  426 (501)
Q Consensus       358 ~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~-~~-l~~gs~dg~i~iwd~~~~~~~  426 (501)
                      ++++.++ .++ |++||+.+++..      ..+..+       ......++++|+ ++ +++.+.++.+.+||..+++.+
T Consensus       169 ~~l~~~~~~~~~v~i~d~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~  242 (300)
T TIGR03866       169 KELWVSSEIGGTVSVIDVATRKVI------KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL  242 (300)
T ss_pred             CEEEEEcCCCCEEEEEEcCcceee------eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            9886554 466 999999987643      222111       112356889998 44 454456778999999988877


Q ss_pred             cccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          427 NSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       427 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      ..+.      +...+.+++|+|+|++|++++. .+|.|.+||+..+..
T Consensus       243 ~~~~------~~~~~~~~~~~~~g~~l~~~~~-~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       243 DYLL------VGQRVWQLAFTPDEKYLLTTNG-VSNDVSVIDVAALKV  283 (300)
T ss_pred             EEEE------eCCCcceEEECCCCCEEEEEcC-CCCeEEEEECCCCcE
Confidence            6552      2346889999999999988753 579999999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=3.3e-23  Score=183.13  Aligned_cols=258  Identities=15%  Similarity=0.225  Sum_probs=203.3

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC----ceeeeccC--CCCceEEEEeeecCCCCCC
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG----SCQRCFKG--HNGPVSTLSDKLLGDGSGK  223 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~----~~~~~~~~--h~~~v~~l~~s~~~~~~~~  223 (501)
                      .|.+.|.++..+.             ..+++.||+ .|-|+||| .+    ..+..+..  ....|.++..+    ++|+
T Consensus       417 ~HGEvVcAvtIS~-------------~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~----pdgr  478 (705)
T KOG0639|consen  417 AHGEVVCAVTISN-------------PTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL----PDGR  478 (705)
T ss_pred             ccCcEEEEEEecC-------------CcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEec----CCCc
Confidence            6888899999987             678999988 57899999 22    22222322  34567777776    8999


Q ss_pred             EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce
Q 010784          224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT  303 (501)
Q Consensus       224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~  303 (501)
                      .|++|++-.++.|||+.....    +....+....-....++.+| +.++.+++..||.|.|||+++..           
T Consensus       479 tLivGGeastlsiWDLAapTp----rikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~-----------  542 (705)
T KOG0639|consen  479 TLIVGGEASTLSIWDLAAPTP----RIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQT-----------  542 (705)
T ss_pred             eEEeccccceeeeeeccCCCc----chhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccce-----------
Confidence            999999999999999987653    12222333334567888998 78899999999999999998763           


Q ss_pred             ecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784          304 SVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKP  382 (501)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~  382 (501)
                                                       .++.+++|.+.+.||.+++||..|.+|+-|+ ||.||++.+..+   
T Consensus       543 ---------------------------------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql---  586 (705)
T KOG0639|consen  543 ---------------------------------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL---  586 (705)
T ss_pred             ---------------------------------eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh---
Confidence                                             4567889999999999999999999999888 999999998654   


Q ss_pred             CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCC
Q 010784          383 QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP  461 (501)
Q Consensus       383 ~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~  461 (501)
                         ... .....|.++-.+|. ..++.|-.++.+.|-... +.....+     ..|.+-|.++.|.+.|+++++.+.|  
T Consensus       587 ---qqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyql-----hlheScVLSlKFa~cGkwfvStGkD--  654 (705)
T KOG0639|consen  587 ---QQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQL-----HLHESCVLSLKFAYCGKWFVSTGKD--  654 (705)
T ss_pred             ---hhh-hhhhhheecccCCCccceeeecccCcEEEEecC-Cccceee-----cccccEEEEEEecccCceeeecCch--
Confidence               222 23578999999999 899998889988888765 3334445     4578899999999999999999955  


Q ss_pred             ceEEEe--------------------eccCCccceeecCCCCceeeecc
Q 010784          462 GLLQFR--------------------DFSNATCPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       462 g~i~~w--------------------~~~~~~~~~~s~~~d~~~~~w~~  490 (501)
                      ..+..|                    |++.+.+++++|+.|....+|.+
T Consensus       655 nlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  655 NLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             hhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            555555                    57778888999999988888765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=2.8e-22  Score=167.87  Aligned_cols=281  Identities=17%  Similarity=0.213  Sum_probs=210.1

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccc-----------cceecc-cCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESY-----------YRATLS-DHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~-----------~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      ...+.|+|||..+++-+.|..+++|++.....           ...+++ -....|....|-+      .....+|+.++
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs------~M~s~qP~t~l  125 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYS------RMKSDQPSTNL  125 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeee------ccccCCCccce
Confidence            55678999999999999999999999763200           000111 1234577777764      12234568899


Q ss_pred             EEEeeCCCceEEec--CCceeeeccC--CCCc---eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC-CCcccccccee
Q 010784          181 LVTSSCDHSIRLWW--KGSCQRCFKG--HNGP---VSTLSDKLLGDGSGKILASGGEDATVRLWSLSS-SGKRGQQALKA  252 (501)
Q Consensus       181 l~s~~~dg~i~vwd--~~~~~~~~~~--h~~~---v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~  252 (501)
                      +++.+.+.-|++||  +|+....+.+  |...   -.+++|+    ++|..|++|. ...|++||+.. +..-.....+.
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs----~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS----PDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec----CCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence            99999999999999  7777666653  4433   4588997    8999999875 57999999944 33211111111


Q ss_pred             -eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784          253 -TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID  331 (501)
Q Consensus       253 -~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  331 (501)
                       ...+..+-|.+++|+|.+...++.|+....+-||.-..+                                        
T Consensus       201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----------------------------------------  240 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----------------------------------------  240 (406)
T ss_pred             cccccccceeeeeeccCCCCcceeeecccceeeeEecCCC----------------------------------------
Confidence             123446788999999988889999999888888876554                                        


Q ss_pred             cCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc--CCcEEEEecCCCCCCCCCCCcccccCccc-CeEEEEe--cCC-eE
Q 010784          332 LRTMQKVMTPAICKPILHSFSIMPSKSLICTGG--IGKAMTWDIRRSQDAVKPQPMAELDGHVG-SVTQLHM--DPY-KI  405 (501)
Q Consensus       332 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~d~i~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~-~~  405 (501)
                          .++..+-+|.+.|+.+.|.++|+.|.+|+  ++.|.+||++....     ++..+..|.+ .-..|.|  .|. ++
T Consensus       241 ----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~-----pv~~L~rhv~~TNQRI~FDld~~~~~  311 (406)
T KOG2919|consen  241 ----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD-----PVYALERHVGDTNQRILFDLDPKGEI  311 (406)
T ss_pred             ----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-----hhhhhhhhccCccceEEEecCCCCce
Confidence                33455668999999999999999999999  34499999998753     4678888866 4445555  566 99


Q ss_pred             EEEecCCCcEEEEeCCC-cccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          406 VTGGRDDLRINIWETDT-GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       406 l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      |++|+.||.|++||++. +.....+     ..+...++.++++|--.++++++.
T Consensus       312 LasG~tdG~V~vwdlk~~gn~~sv~-----~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  312 LASGDTDGSVRVWDLKDLGNEVSVT-----GNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             eeccCCCccEEEEecCCCCCccccc-----ccccccccceecCcccceeeeccC
Confidence            99999999999999988 6666666     566788999999999889998873

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.2e-23  Score=179.32  Aligned_cols=290  Identities=17%  Similarity=0.208  Sum_probs=203.3

Q ss_pred             ceEEeeCCcEEEeecCC---eeeEEEEecccccccceecccC----CcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          114 DHILLDNNDIFSTQGSS---IQNIKIDNFLSESYYRATLSDH----KARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       114 ~~~~~~~~~~~~~~g~~---d~~i~vw~~~~~~~~~~~~~~h----~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      .-+.+-|...+++++-.   ...+.+|=.+.  ..-..+..|    ...-.|++|...+      ..-..-|+++|.|..
T Consensus       129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~--~e~nlYvHHD~ilpafPLC~ewld~~------~~~~~~gNyvAiGtm  200 (463)
T KOG0270|consen  129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNE--EEENLYVHHDFILPAFPLCIEWLDHG------SKSGGAGNYVAIGTM  200 (463)
T ss_pred             ccceeccCCcEEEEeeccCCceEEEEEEEcC--CCcceeEecceeccCcchhhhhhhcC------CCCCCCcceEEEecc
Confidence            45566676666666644   23444443332  111122222    2233566765321      001125799999999


Q ss_pred             CCceEEec---CCce--ee------------------eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCC
Q 010784          187 DHSIRLWW---KGSC--QR------------------CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG  243 (501)
Q Consensus       187 dg~i~vwd---~~~~--~~------------------~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~  243 (501)
                      |..|.|||   ....  ..                  .-.+|+..|.++.|.   ....+.|+|||.|.+|++||+.+++
T Consensus       201 dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n---~~~~nVLaSgsaD~TV~lWD~~~g~  277 (463)
T KOG0270|consen  201 DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN---RNFRNVLASGSADKTVKLWDVDTGK  277 (463)
T ss_pred             CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc---cccceeEEecCCCceEEEEEcCCCC
Confidence            99999998   1110  00                  112689899999886   3456799999999999999999988


Q ss_pred             ccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe
Q 010784          244 KRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS  323 (501)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (501)
                            +...+..|.+.|.++.|+|..+..|++|+.|++|.+.|.+......                            
T Consensus       278 ------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~----------------------------  323 (463)
T KOG0270|consen  278 ------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG----------------------------  323 (463)
T ss_pred             ------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC----------------------------
Confidence                  5888889999999999999999999999999999999999632100                            


Q ss_pred             CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec
Q 010784          324 GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD  401 (501)
Q Consensus       324 ~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  401 (501)
                                     ..++ ..+.|..++|.|. ...++++.+|+ ++-+|+|+..     +++.+++.|.++|.+|+++
T Consensus       324 ---------------~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-----~~vwt~~AHd~~ISgl~~n  382 (463)
T KOG0270|consen  324 ---------------KEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-----KPVWTLKAHDDEISGLSVN  382 (463)
T ss_pred             ---------------ceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCC-----CceeEEEeccCCcceEEec
Confidence                           0011 2577889999986 45677777888 9999999974     4579999999999999999


Q ss_pred             CC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc-EEEEeecCCCceEEEeeccCCcc
Q 010784          402 PY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC-RIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       402 ~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      +.  .++++++.|+.|++|++..-....... +  .-.-+...|.++.|+-. +++.|+  ..+.+++||+.....
T Consensus       383 ~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~--~~~~~rl~c~~~~~~~a~~la~GG--~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  383 IQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-H--SFKLGRLHCFALDPDVAFTLAFGG--EKAVLRVWDIFTNSP  453 (463)
T ss_pred             CCCCcceeeccccceEEEEeecCCCCccccc-c--cccccceeecccCCCcceEEEecC--ccceEEEeecccChh
Confidence            88  899999999999999997544322221 0  01123456677777765 455565  667899999876554

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=8e-23  Score=185.86  Aligned_cols=282  Identities=16%  Similarity=0.190  Sum_probs=194.2

Q ss_pred             cCcEEEEeeCCCceEEecCCce--------eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784          177 TENVLVTSSCDHSIRLWWKGSC--------QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd~~~~--------~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  248 (501)
                      ...+|+.+..||.|.++|+.+.        +.....|...|..+.|.    +....|++++.|.++++||+++.+.    
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wa----pge~~lVsasGDsT~r~Wdvk~s~l----  134 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWA----PGESLLVSASGDSTIRPWDVKTSRL----  134 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccC----CCceeEEEccCCceeeeeeecccee----
Confidence            4578999999999999992211        24456899999999996    6778999999999999999998763    


Q ss_pred             cceee--ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc--eecCCCceeeecCCCeEEEEeC
Q 010784          249 ALKAT--LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM--TSVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       249 ~~~~~--~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  324 (501)
                        ...  +.+|...|.+++|.+.+...|++|+.||.|.|||++....-........  ..+.+.+.-..           
T Consensus       135 --~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk-----------  201 (720)
T KOG0321|consen  135 --VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK-----------  201 (720)
T ss_pred             --ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc-----------
Confidence              444  7899999999999999999999999999999999986541100000000  00011000000           


Q ss_pred             CcEEEEEcCCCceEeeeccCCCcEEE---EEEcCCCcEEEEEcC-Cc-EEEEecCCCCCCCCCCCcccc--cCc---ccC
Q 010784          325 SSVVTIDLRTMQKVMTPAICKPILHS---FSIMPSKSLICTGGI-GK-AMTWDIRRSQDAVKPQPMAEL--DGH---VGS  394 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~~~~v~~---v~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~~--~~h---~~~  394 (501)
                              ...+.+.....+...|.+   +.+..|...|++++. |+ |++||++......+.++....  ..|   .-.
T Consensus       202 --------p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G  273 (720)
T KOG0321|consen  202 --------PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG  273 (720)
T ss_pred             --------hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence                    000122333345555555   556678888888885 77 999999997766544444433  333   346


Q ss_pred             eEEEEecCC--eEEEEecCCCcEEEEeCCCcc--cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          395 VTQLHMDPY--KIVTGGRDDLRINIWETDTGM--LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       395 v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +.++..+..  +++|++ .|+.|++|++.+-.  .+..+.++..   ..--..-..+||+.+|++|+.  |...++|.++
T Consensus       274 ~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~---~sf~vks~lSpd~~~l~SgSs--d~~ayiw~vs  347 (720)
T KOG0321|consen  274 QVNLILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLN---SSFYVKSELSPDDCSLLSGSS--DEQAYIWVVS  347 (720)
T ss_pred             eEEEEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCccc---ceeeeeeecCCCCceEeccCC--Ccceeeeeec
Confidence            777777775  777776 69999999997632  3333322110   111122367899999999994  5999999876


Q ss_pred             CCc-----------------------cceeecCCCCceeeecccCC
Q 010784          471 NAT-----------------------CPVLKHEVQNDSKFWGPQCY  493 (501)
Q Consensus       471 ~~~-----------------------~~~~s~~~d~~~~~w~~~~~  493 (501)
                      ...                       ..+++.++|..+++|++..+
T Consensus       348 ~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  348 SPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            433                       34677799999999999544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=3.7e-22  Score=172.17  Aligned_cols=309  Identities=18%  Similarity=0.247  Sum_probs=220.0

Q ss_pred             cCCCCceEEeeCCcE-EEeecCCeeeEEEEecccc--------cccceecccCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784          109 VAKPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSE--------SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN  179 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~--------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~  179 (501)
                      ...++..+.|.++.. .+|||+.|..|++|.+..+        -+....|..|...|+++.|+|             +|+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-------------~ge   78 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-------------DGE   78 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-------------CcC
Confidence            566789999998877 9999999999999987643        245567889999999999999             899


Q ss_pred             EEEEeeCCCceEEecCC------------------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC
Q 010784          180 VLVTSSCDHSIRLWWKG------------------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS  241 (501)
Q Consensus       180 ~l~s~~~dg~i~vwd~~------------------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~  241 (501)
                      +|+||+.+|.|.+|..+                  ...+.+.+|...|..++|+    +++.++++|+.|..+++||+..
T Consensus        79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws----~d~~~l~s~s~dns~~l~Dv~~  154 (434)
T KOG1009|consen   79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS----PDSNFLVSGSVDNSVRLWDVHA  154 (434)
T ss_pred             eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc----CCCceeeeeeccceEEEEEecc
Confidence            99999999999999521                  1234567899999999997    8999999999999999999999


Q ss_pred             CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEE
Q 010784          242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYI  321 (501)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (501)
                      +.      +...+..|...|..++|.| -++++++-+.|...+.+.+...+.+.........       .....+.    
T Consensus       155 G~------l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~-------~~~~~~~----  216 (434)
T KOG1009|consen  155 GQ------LLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMP-------AKAFNER----  216 (434)
T ss_pred             ce------eEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEee-------ecccCCC----
Confidence            87      5888899999999999998 6779999999987777776654332211100000       0000000    


Q ss_pred             EeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC----Cc-E-----EEEecCCCCCCCCCCCcccccCc
Q 010784          322 ASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI----GK-A-----MTWDIRRSQDAVKPQPMAELDGH  391 (501)
Q Consensus       322 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~----d~-i-----~iwd~~~~~~~~~~~~~~~~~~h  391 (501)
                       .+...+++.=+++         ..-...++|+|+|.++++.+.    ++ +     ++++-...     .+|...+...
T Consensus       217 -e~~s~rLfhDeTl---------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l-----~rP~~~lp~~  281 (434)
T KOG1009|consen  217 -EGKSTRLFHDETL---------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL-----KRPAARLPSP  281 (434)
T ss_pred             -CcceeeeeecCch---------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc-----cCceeecCCC
Confidence             0001122211111         223456889999999987651    22 3     44443322     3445555555


Q ss_pred             ccCeEEEEecC------------------C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784          392 VGSVTQLHMDP------------------Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR  452 (501)
Q Consensus       392 ~~~v~~l~~~~------------------~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  452 (501)
                      ..++..+.++|                  . -+++.+ ....|.+||.++..++....    .-|-..++.++|++||..
T Consensus       282 ~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~~P~~~v~----nihy~~iTDiaws~dg~~  356 (434)
T KOG1009|consen  282 KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTLEPLAVVD----NIHYSAITDIAWSDDGSV  356 (434)
T ss_pred             CcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEEEeccccccceEEEe----eeeeeeecceeecCCCcE
Confidence            55555555444                  2 234444 55689999999988887774    456788999999999999


Q ss_pred             EEEeecCCCceEEEeeccCCcc
Q 010784          453 IVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       453 l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      |+..|.  ||...+-.|...+.
T Consensus       357 l~vSS~--DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  357 LLVSST--DGFCSLVTFEPWEL  376 (434)
T ss_pred             EEEecc--CCceEEEEEcchhc
Confidence            999994  58877777665543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.2e-21  Score=174.55  Aligned_cols=334  Identities=12%  Similarity=0.117  Sum_probs=232.3

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccc------eecc-cCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYR------ATLS-DHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~------~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ..+-++.|++++..++.|+.||.|++||..++....      ..+. +..--|+++.|..              ...|++
T Consensus       155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--------------d~tI~s  220 (691)
T KOG2048|consen  155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--------------DSTIAS  220 (691)
T ss_pred             ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--------------cCcEEE
Confidence            448899999999999999999999999999863322      1111 2344588888876              478999


Q ss_pred             eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                      |...|+|++||  .+..++.+..|.+.|.|++..    ++++++++++.|+.|.-+...+...  ++........|...|
T Consensus       221 gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~----~~~d~vfsaGvd~~ii~~~~~~~~~--~wv~~~~r~~h~hdv  294 (691)
T KOG2048|consen  221 GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA----DNEDRVFSAGVDPKIIQYSLTTNKS--EWVINSRRDLHAHDV  294 (691)
T ss_pred             ecCCceEEEEcccCcchhhhhhhhhcceeEEEEc----CCCCeEEEccCCCceEEEEecCCcc--ceeeeccccCCcccc
Confidence            99999999999  889999999999999999985    7789999999999999999887654  233344556789999


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc-----
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ-----  336 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----  336 (501)
                      .+++..+.   .+++|+.|..+.+--.+..+.....  .....+......++......++-..+.+.+|.+.+..     
T Consensus       295 rs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~--~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~  369 (691)
T KOG2048|consen  295 RSMAVIEN---ALISGGRDFTLAICSSREFKNMDHR--QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEY  369 (691)
T ss_pred             eeeeeecc---eEEecceeeEEEEccccccCchhhh--ccccccccceeecCccceEEEEeccccccceeccCccccccc
Confidence            99999853   8999999999988766653322111  1111222333333333333444446678888776551     


Q ss_pred             ----eEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEec
Q 010784          337 ----KVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGR  410 (501)
Q Consensus       337 ----~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs  410 (501)
                          ..+........|.+.+.+|+|++++.+.-...+||.+.....+ +...+.......-....+.|+-+  +++...-
T Consensus       370 ~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~v-k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~  448 (691)
T KOG2048|consen  370 NYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNV-KVINVDDVPLALLDASAISFTIDKNKLFLVSK  448 (691)
T ss_pred             ChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcce-eEEEeccchhhhccceeeEEEecCceEEEEec
Confidence                1122223356789999999999999999777888888763321 01111222222334556666655  4444434


Q ss_pred             CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          411 DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       411 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      .+..+.+++.++......... .+......|..+..|++|++|++.+  ..|.|.+|++....
T Consensus       449 ~~~~le~~el~~ps~kel~~~-~~~~~~~~I~~l~~SsdG~yiaa~~--t~g~I~v~nl~~~~  508 (691)
T KOG2048|consen  449 NIFSLEEFELETPSFKELKSI-QSQAKCPSISRLVVSSDGNYIAAIS--TRGQIFVYNLETLE  508 (691)
T ss_pred             ccceeEEEEecCcchhhhhcc-ccccCCCcceeEEEcCCCCEEEEEe--ccceEEEEEcccce
Confidence            778888888876543322211 1123466789999999999999999  55999999977554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.8e-23  Score=199.79  Aligned_cols=288  Identities=17%  Similarity=0.220  Sum_probs=209.7

Q ss_pred             ceEEeeCCcE-EEeecCC----------eeeEEEEeccc--cc---ccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784          114 DHILLDNNDI-FSTQGSS----------IQNIKIDNFLS--ES---YYRATLSDHKARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       114 ~~~~~~~~~~-~~~~g~~----------d~~i~vw~~~~--~~---~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      ..++|+|.+. ++|+|..          +.++.+|.+.-  +.   +.+..+ .-..+-+.++|.+.+..         .
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~---------~   79 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSH---------S   79 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCC---------c
Confidence            4467777765 5555543          44555554432  11   122222 22456889999884311         1


Q ss_pred             CcEEEEeeCCCceEEecCC--------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccc
Q 010784          178 ENVLVTSSCDHSIRLWWKG--------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQA  249 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd~~--------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  249 (501)
                      ..+|+.|..||.|.+||..        ..+.++..|++.|..+.|.+   ..+++|++|+.||.|.|||++..+.     
T Consensus        80 ~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~---~q~nlLASGa~~geI~iWDlnn~~t-----  151 (1049)
T KOG0307|consen   80 HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP---FQGNLLASGADDGEILIWDLNKPET-----  151 (1049)
T ss_pred             cceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccc---cCCceeeccCCCCcEEEeccCCcCC-----
Confidence            1369999999999999821        23556778999999999972   4456999999999999999998654     


Q ss_pred             ceee-ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEE
Q 010784          250 LKAT-LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVV  328 (501)
Q Consensus       250 ~~~~-~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  328 (501)
                      .... -....+.|.+++|+.....+|++++.+|.+.|||++..+.+-...                              
T Consensus       152 P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls------------------------------  201 (1049)
T KOG0307|consen  152 PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS------------------------------  201 (1049)
T ss_pred             CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc------------------------------
Confidence            1111 223567899999997778899999999999999999875432211                              


Q ss_pred             EEEcCCCceEeeeccCCCcEEEEEEcCCC-cEEEEEc-CCc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC
Q 010784          329 TIDLRTMQKVMTPAICKPILHSFSIMPSK-SLICTGG-IGK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY  403 (501)
Q Consensus       329 ~~d~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~-~d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  403 (501)
                                  .......+..++|+|+. ..+++++ +|+   |.+||+|...     .+++++++|...|.++.|++.
T Consensus       202 ------------~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-----sP~k~~~~H~~GilslsWc~~  264 (1049)
T KOG0307|consen  202 ------------DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-----SPLKILEGHQRGILSLSWCPQ  264 (1049)
T ss_pred             ------------cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-----CchhhhcccccceeeeccCCC
Confidence                        00112447789999984 4455444 444   9999999864     457888999999999999987


Q ss_pred             --eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc-EEEEeecCCCceEEEeeccCCc
Q 010784          404 --KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC-RIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       404 --~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                        +++++++.|++|.+|+.++++.+..+.     ....++..+.|+|... .+++++  -+|.|.|+.+....
T Consensus       265 D~~lllSsgkD~~ii~wN~~tgEvl~~~p-----~~~nW~fdv~w~pr~P~~~A~as--fdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  265 DPRLLLSSGKDNRIICWNPNTGEVLGELP-----AQGNWCFDVQWCPRNPSVMAAAS--FDGKISIYSLQGTD  330 (1049)
T ss_pred             CchhhhcccCCCCeeEecCCCceEeeecC-----CCCcceeeeeecCCCcchhhhhe--eccceeeeeeecCC
Confidence              888888899999999999999999994     3578899999999887 666666  56999999987655

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=9.5e-22  Score=165.07  Aligned_cols=322  Identities=13%  Similarity=0.197  Sum_probs=216.8

Q ss_pred             ecCCCCceEEee-----CCcEEEeecCCeeeEEEEecccc--cccceec--ccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784          108 SVAKPHDHILLD-----NNDIFSTQGSSIQNIKIDNFLSE--SYYRATL--SDHKARITCMRLFPLHETSLFRSEPQRTE  178 (501)
Q Consensus       108 ~~~~~i~~~~~~-----~~~~~~~~g~~d~~i~vw~~~~~--~~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~  178 (501)
                      .+..+|..++|+     ..-..+|+.+. ..+.+|.....  .+.+...  ..|.+.-..++|+-+..+         ..
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~---------~~  105 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNT---------GN  105 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCC---------CC
Confidence            345678888887     23344554443 34555654432  1333333  247778888898764211         24


Q ss_pred             cEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee---
Q 010784          179 NVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT---  253 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~---  253 (501)
                      .++|.|+.-|.|+|.|  .+++...+.+|...|+.+.|+|   .+.+++++||.|.+||+|++.+..      ++..   
T Consensus       106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p---~~~qlvls~SkD~svRlwnI~~~~------Cv~VfGG  176 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHP---DRPQLVLSASKDHSVRLWNIQTDV------CVAVFGG  176 (385)
T ss_pred             eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCC---CCCcEEEEecCCceEEEEeccCCe------EEEEecc
Confidence            6899999999999999  8888999999999999999984   556899999999999999999976      3544   


Q ss_pred             ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784          254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR  333 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  333 (501)
                      +.+|...|.++.|+. ++.++++++.|.++++|++...+.....+............-  +..        -...+.+. 
T Consensus       177 ~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p--fpt--------~~~~fp~f-  244 (385)
T KOG1034|consen  177 VEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP--FPT--------PKTHFPDF-  244 (385)
T ss_pred             cccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc--CCc--------cccccccc-
Confidence            467999999999997 778999999999999999986644333222211111100000  000        00111111 


Q ss_pred             CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecC-CCCCC---CC----CCCcccccCcccCeEEEEe--cC
Q 010784          334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIR-RSQDA---VK----PQPMAELDGHVGSVTQLHM--DP  402 (501)
Q Consensus       334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~-~~~~~---~~----~~~~~~~~~h~~~v~~l~~--~~  402 (501)
                           .+-..|...|-|+.|-  |+++++-+-++ |..|..- -.+..   ..    ...+.++......|.-+.|  +|
T Consensus       245 -----st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~  317 (385)
T KOG1034|consen  245 -----STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP  317 (385)
T ss_pred             -----cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH
Confidence                 1234578888888884  67888888777 9999872 22210   00    1122333333445666654  55


Q ss_pred             C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          403 Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       403 ~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      . +++|.|...|.|.+||+++.++...-.... ......|...+|+.||..|+...  +++.|.-||.-
T Consensus       318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~-s~~~~tVRQ~sfS~dgs~lv~vc--dd~~Vwrwdrv  383 (385)
T KOG1034|consen  318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH-SKSGSTVRQTSFSRDGSILVLVC--DDGTVWRWDRV  383 (385)
T ss_pred             HHHHHhhccCCCcEEEEECCCCCCccCceEEe-ccccceeeeeeecccCcEEEEEe--CCCcEEEEEee
Confidence            5 999999999999999999876632111111 23467789999999999999998  77999999853

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=1.1e-21  Score=178.30  Aligned_cols=146  Identities=16%  Similarity=0.213  Sum_probs=119.6

Q ss_pred             eCCcEEEEEcCCCceEe--eec--cCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCC-CCCCCcccccCcccCe
Q 010784          323 SGSSVVTIDLRTMQKVM--TPA--ICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDA-VKPQPMAELDGHVGSV  395 (501)
Q Consensus       323 ~~~~i~~~d~~~~~~~~--~~~--~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~-~~~~~~~~~~~h~~~v  395 (501)
                      .++.|.+|+++....+-  .+.  .....|+.+.|.| |.+.|+++++|+ |++|.+..+... ....+-..+..|...|
T Consensus       601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI  680 (1012)
T KOG1445|consen  601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI  680 (1012)
T ss_pred             CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence            35699999997654321  111  1356799999999 578899999999 999999875432 2245557788999999


Q ss_pred             EEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          396 TQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       396 ~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      +++.|+|-  .++++++.|-+|++||+.+++....+     .+|...|.+++|||||+.+++.+  .||+|++|+-....
T Consensus       681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-----~gHtdqIf~~AWSpdGr~~AtVc--KDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-----VGHTDQIFGIAWSPDGRRIATVC--KDGTLRVYEPRSRE  753 (1012)
T ss_pred             EEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-----ccCcCceeEEEECCCCcceeeee--cCceEEEeCCCCCC
Confidence            99999998  89999999999999999999999999     68899999999999999999999  66999999966554


Q ss_pred             cc
Q 010784          474 CP  475 (501)
Q Consensus       474 ~~  475 (501)
                      .+
T Consensus       754 ~p  755 (1012)
T KOG1445|consen  754 QP  755 (1012)
T ss_pred             Cc
Confidence            44

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=1.7e-21  Score=170.58  Aligned_cols=261  Identities=18%  Similarity=0.198  Sum_probs=189.6

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCC------ceeeeccCCCCceEEEEeeec
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKG------SCQRCFKGHNGPVSTLSDKLL  217 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~h~~~v~~l~~s~~  217 (501)
                      ......+-|.++|++++|+|..           +.+++++|..-|+|-+||.+      ..+..+..|.++|.+|.|+| 
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~-----------~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P-  244 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTE-----------NRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSP-  244 (498)
T ss_pred             eecceeEecccceEEEEecccC-----------cceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecC-
Confidence            3445566789999999999952           34799999999999999932      23456778999999999985 


Q ss_pred             CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784          218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  297 (501)
                        .+...+++.+.||+|++-|+++...    ..+.........+..+.|+. +...++.+..=|...+||+++....   
T Consensus       245 --~n~s~i~ssSyDGtiR~~D~~~~i~----e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~---  314 (498)
T KOG4328|consen  245 --ANTSQIYSSSYDGTIRLQDFEGNIS----EEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSE---  314 (498)
T ss_pred             --CChhheeeeccCceeeeeeecchhh----HHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCcc---
Confidence              5667899999999999999998642    12333333455667777876 4445555666568999999987431   


Q ss_pred             ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCC
Q 010784          298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~  375 (501)
                                                              ...+..|...|.+++++|. ..+|++++.|. .+|||++.
T Consensus       315 ----------------------------------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~  354 (498)
T KOG4328|consen  315 ----------------------------------------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ  354 (498)
T ss_pred             ----------------------------------------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhh
Confidence                                                    1234457889999999996 67899999888 99999998


Q ss_pred             CCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCC----CcccccccccCCCCCCCcc--eeeeEee
Q 010784          376 SQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETD----TGMLANSLLCNYPEEADIS--TGCSAMA  447 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~--v~~~~~s  447 (501)
                      -...  ..++.....|...|.+..|+|.  .++.+ +.|..|+|||..    ...++.++. |. ..+..+  .....|.
T Consensus       355 l~~K--~sp~lst~~HrrsV~sAyFSPs~gtl~TT-~~D~~IRv~dss~~sa~~~p~~~I~-Hn-~~t~RwlT~fKA~W~  429 (498)
T KOG4328|consen  355 LRGK--ASPFLSTLPHRRSVNSAYFSPSGGTLLTT-CQDNEIRVFDSSCISAKDEPLGTIP-HN-NRTGRWLTPFKAAWD  429 (498)
T ss_pred             hcCC--CCcceecccccceeeeeEEcCCCCceEee-ccCCceEEeecccccccCCccceee-cc-CcccccccchhheeC
Confidence            6543  2234555579999999999999  65555 699999999984    333444442 21 112222  2346899


Q ss_pred             ccccEEEEeecCCCceEEEeeccCCc
Q 010784          448 VSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       448 ~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      |+..+|++|-+  ...|-|+|-+.++
T Consensus       430 P~~~li~vg~~--~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  430 PDYNLIVVGRY--PRPIDVFDGNGGQ  453 (498)
T ss_pred             CCccEEEEecc--CcceeEEcCCCCE
Confidence            99999999985  3678888854433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2e-21  Score=170.33  Aligned_cols=267  Identities=13%  Similarity=0.183  Sum_probs=202.6

Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRV  285 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~v  285 (501)
                      .+.|+++.|+    |....+++|+.||++++|.++....    +.++.+.-...+|.+..|.|.+...+++++....++.
T Consensus       213 ~~~I~sv~FH----p~~plllvaG~d~~lrifqvDGk~N----~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys  284 (514)
T KOG2055|consen  213 HGGITSVQFH----PTAPLLLVAGLDGTLRIFQVDGKVN----PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS  284 (514)
T ss_pred             cCCceEEEec----CCCceEEEecCCCcEEEEEecCccC----hhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence            5689999998    7889999999999999999987543    2566666677899999999955559999999999999


Q ss_pred             EECCCCccccceecccceecCCCceeeecCCCeEEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784          286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG  364 (501)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  364 (501)
                      ||+.+.+..............-..+.++...+.+.++. .+.|.+.-..+++.+.+++. .+.|..++|+.+++.|++.+
T Consensus       285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~  363 (514)
T KOG2055|consen  285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASG  363 (514)
T ss_pred             eeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEc
Confidence            99998865433222222211222233333333332222 24899999999999988885 78899999999998888887


Q ss_pred             CCc-EEEEecCCCCCCCCCCCcccccCcccC--eEEEEecCC-eEEEEecCCCcEEEEeCCC------cccccccccCCC
Q 010784          365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGS--VTQLHMDPY-KIVTGGRDDLRINIWETDT------GMLANSLLCNYP  434 (501)
Q Consensus       365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~-~~l~~gs~dg~i~iwd~~~------~~~~~~~~~~~~  434 (501)
                      .++ |.+||++...++      +.+.. .+.  -++++.+++ .++|+||..|.|.|||..+      .+++.++     
T Consensus       364 ~~GeV~v~nl~~~~~~------~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~-----  431 (514)
T KOG2055|consen  364 GTGEVYVWNLRQNSCL------HRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV-----  431 (514)
T ss_pred             CCceEEEEecCCcceE------EEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh-----
Confidence            777 999999997554      66554 333  356777888 9999999999999999653      4566666     


Q ss_pred             CCCCcceeeeEeeccccEEEEeecCCCc------------------------eEEEeeccCCccceeecCCCCceeeecc
Q 010784          435 EEADISTGCSAMAVSGCRIVTASYGEPG------------------------LLQFRDFSNATCPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       435 ~~~~~~v~~~~~s~~g~~l~s~~~d~~g------------------------~i~~w~~~~~~~~~~s~~~d~~~~~w~~  490 (501)
                      ..-...|+.+.|++|++.|+.+|.-.+.                        .++..+|++.+..++.|.++|.+.+|.+
T Consensus       432 dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  432 DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence            3446789999999999999988765333                        4444567888888999999999999998


Q ss_pred             cCC
Q 010784          491 QCY  493 (501)
Q Consensus       491 ~~~  493 (501)
                      ..|
T Consensus       512 ~hy  514 (514)
T KOG2055|consen  512 HHY  514 (514)
T ss_pred             ccC
Confidence            653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=3.5e-21  Score=170.17  Aligned_cols=261  Identities=15%  Similarity=0.245  Sum_probs=198.0

Q ss_pred             CCCceEEeeCCc-EEEeecCCeeeEEEEecccc---cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          111 KPHDHILLDNND-IFSTQGSSIQNIKIDNFLSE---SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       111 ~~i~~~~~~~~~-~~~~~g~~d~~i~vw~~~~~---~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      ..+.++.|+... ..+++.+.|+.+++|.-...   ...+..+.+.  .-.|++...             ...++++|+.
T Consensus        35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s-------------~S~y~~sgG~   99 (673)
T KOG4378|consen   35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS-------------QSLYEISGGQ   99 (673)
T ss_pred             CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhh-------------cceeeeccCc
Confidence            348899998766 55566677999999975531   1112222222  333444333             3579999999


Q ss_pred             CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC-CCceeE
Q 010784          187 DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-EKPIKL  263 (501)
Q Consensus       187 dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~  263 (501)
                      .+.|+|||  ...+.+.+++|+..|+++.+.    ....+|++++..|.|.|..+.++..      ...+... ...|+-
T Consensus       100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN----~~DeyiAsvs~gGdiiih~~~t~~~------tt~f~~~sgqsvRl  169 (673)
T KOG4378|consen  100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN----NTDEYIASVSDGGDIIIHGTKTKQK------TTTFTIDSGQSVRL  169 (673)
T ss_pred             CceeeehhhHHHHHhhhccCCcceeEEEEec----CCcceeEEeccCCcEEEEecccCcc------ccceecCCCCeEEE
Confidence            99999999  445567789999999999985    7788999999999999999998764      3444333 456678


Q ss_pred             EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEeee
Q 010784          264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~  341 (501)
                      +.+++....+|.+++.+|.|.+||+....+.......+  ..+..-+++......+++..|  ..|.+||.+..+....+
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H--sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l  247 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH--SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL  247 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhhc--cCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence            99999888899999999999999998876654433222  334445566666666666655  48999999987766655


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCe
Q 010784          342 AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYK  404 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  404 (501)
                      . ...+...++|+++|.+|+.|...+ |..||++..+     .|+..+..|...|++++|-|..
T Consensus       248 ~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-----~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  248 T-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-----APVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             e-ecCCcceeeecCCceEEEeecCCceEEEEecccCC-----CCceEeeecccceeEEEeeecc
Confidence            4 467889999999999999999888 9999999875     4578899999999999998873

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=6.9e-21  Score=159.05  Aligned_cols=262  Identities=13%  Similarity=0.135  Sum_probs=189.4

Q ss_pred             eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCc
Q 010784          156 ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDAT  233 (501)
Q Consensus       156 V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~  233 (501)
                      -.|+.|++             .|.+||+|+.||.|.|||  +...-+.+.+|..+|++++||    ++|+.|++++.|..
T Consensus        26 a~~~~Fs~-------------~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS----~dgr~LltsS~D~s   88 (405)
T KOG1273|consen   26 AECCQFSR-------------WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWS----RDGRKLLTSSRDWS   88 (405)
T ss_pred             cceEEecc-------------CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEec----CCCCEeeeecCCce
Confidence            77889998             899999999999999999  666778899999999999998    89999999999999


Q ss_pred             EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeee
Q 010784          234 VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMK  313 (501)
Q Consensus       234 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (501)
                      |.+||+..+.      +++.+. ..++|+...|+|.+.+.+++.-.+..-.+-++..++..    ++            .
T Consensus        89 i~lwDl~~gs------~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~----~L------------p  145 (405)
T KOG1273|consen   89 IKLWDLLKGS------PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS----VL------------P  145 (405)
T ss_pred             eEEEeccCCC------ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee----ec------------c
Confidence            9999999987      355554 67899999999987777766655555555555432110    00            0


Q ss_pred             cCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcc
Q 010784          314 CHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHV  392 (501)
Q Consensus       314 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~  392 (501)
                      .+++                  ..      -.....+..|.+.|+++++|...| +.++|..+.+++      ..++-..
T Consensus       146 ~d~d------------------~d------ln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v------as~rits  195 (405)
T KOG1273|consen  146 KDDD------------------GD------LNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV------ASFRITS  195 (405)
T ss_pred             CCCc------------------cc------cccccccccccCCCCEEEEecCcceEEEEecchheee------eeeeech
Confidence            0000                  00      011112236888999999999888 999999997654      5555444


Q ss_pred             -cCeEEEEecCC-eEEEEecCCCcEEEEeCCC-------c--ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCC
Q 010784          393 -GSVTQLHMDPY-KIVTGGRDDLRINIWETDT-------G--MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP  461 (501)
Q Consensus       393 -~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~-------~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~  461 (501)
                       ..|..+.++.. ++++.-+.|..|+.|+++.       +  ++.+.+..   .-....=.+++||.+|.|+++++. ..
T Consensus       196 ~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD---vVNk~~Wk~ccfs~dgeYv~a~s~-~a  271 (405)
T KOG1273|consen  196 VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD---VVNKLQWKKCCFSGDGEYVCAGSA-RA  271 (405)
T ss_pred             heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH---HHhhhhhhheeecCCccEEEeccc-cc
Confidence             67888999988 8888878999999999862       1  11122210   001122356899999999999985 67


Q ss_pred             ceEEEeeccCCc---------------------cceeecCCCCceeeeccc
Q 010784          462 GLLQFRDFSNAT---------------------CPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       462 g~i~~w~~~~~~---------------------~~~~s~~~d~~~~~w~~~  491 (501)
                      -.+++|.-+.|.                     .+++..-..|++.+|...
T Consensus       272 HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~  322 (405)
T KOG1273|consen  272 HALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVV  322 (405)
T ss_pred             eeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEee
Confidence            789999855433                     122333377899999765

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.8e-22  Score=195.79  Aligned_cols=242  Identities=17%  Similarity=0.205  Sum_probs=195.2

Q ss_pred             CceEEeeCCcEE----EeecCCeeeEEEEecccc-----cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          113 HDHILLDNNDIF----STQGSSIQNIKIDNFLSE-----SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       113 i~~~~~~~~~~~----~~~g~~d~~i~vw~~~~~-----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      -+.++|.+.|..    ||.|..||.|.+||....     ...+.+...|++.|..+.|++.            .++.||+
T Consensus        67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~------------q~nlLAS  134 (1049)
T KOG0307|consen   67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF------------QGNLLAS  134 (1049)
T ss_pred             ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc------------CCceeec
Confidence            467788776655    899999999999997651     3567778899999999999996            6789999


Q ss_pred             eeCCCceEEecCCceeee--c--cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          184 SSCDHSIRLWWKGSCQRC--F--KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       184 ~~~dg~i~vwd~~~~~~~--~--~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      |+.||.|.|||..+.-.-  +  ....+.|.+++|.   ......|++++.+|.+.|||++..+.      +..+..+..
T Consensus       135 Ga~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWN---rkvqhILAS~s~sg~~~iWDlr~~~p------ii~ls~~~~  205 (1049)
T KOG0307|consen  135 GADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWN---RKVSHILASGSPSGRAVIWDLRKKKP------IIKLSDTPG  205 (1049)
T ss_pred             cCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccc---hhhhHHhhccCCCCCceeccccCCCc------ccccccCCC
Confidence            999999999993322222  2  1246789999996   45667899999999999999998763      444544443


Q ss_pred             --ceeEEEEeecCCeEEEEEeCCC---eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          260 --PIKLMSVAGHKSFLLVTISKDS---KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       260 --~v~~l~~~~~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                        .+..+.|+|+....+++++.|.   .|.+||+|...                                          
T Consensus       206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as------------------------------------------  243 (1049)
T KOG0307|consen  206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS------------------------------------------  243 (1049)
T ss_pred             ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC------------------------------------------
Confidence              4778999998888899988774   47888887542                                          


Q ss_pred             CceEeeeccCCCcEEEEEEcCCC-cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEec
Q 010784          335 MQKVMTPAICKPILHSFSIMPSK-SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGR  410 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs  410 (501)
                       ..++.+++|...|.++.|++.+ +++++++.|+ |.+|+..+++.+      .++....+++..+.|.|.  .++++.+
T Consensus       244 -sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl------~~~p~~~nW~fdv~w~pr~P~~~A~as  316 (1049)
T KOG0307|consen  244 -SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL------GELPAQGNWCFDVQWCPRNPSVMAAAS  316 (1049)
T ss_pred             -CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe------eecCCCCcceeeeeecCCCcchhhhhe
Confidence             2345667899999999999975 8899999888 999999998765      777777889999999998  6888889


Q ss_pred             CCCcEEEEeCCCcc
Q 010784          411 DDLRINIWETDTGM  424 (501)
Q Consensus       411 ~dg~i~iwd~~~~~  424 (501)
                      .||.|.|+.+.+..
T Consensus       317 fdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  317 FDGKISIYSLQGTD  330 (1049)
T ss_pred             eccceeeeeeecCC
Confidence            99999999997654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=2.3e-20  Score=154.08  Aligned_cols=287  Identities=19%  Similarity=0.265  Sum_probs=206.8

Q ss_pred             CceEEeeCCcEEEeecCC----eeeEEEEecccc--cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          113 HDHILLDNNDIFSTQGSS----IQNIKIDNFLSE--SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~----d~~i~vw~~~~~--~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      ++...-+.+...+.+|..    ++.|.+-+++.+  .-..+.|..|.+.|+.++-+|.            +..+|+|+..
T Consensus        17 lT~qtad~d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~------------d~~ilaT~yn   84 (370)
T KOG1007|consen   17 LTPQTADRDHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPF------------DQRILATVYN   84 (370)
T ss_pred             cCccccCccceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCC------------CCceEEEEEe
Confidence            444455566666777754    677777776654  2345677889999999999995            6778888765


Q ss_pred             C-------CceEEecCC-----------ceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc
Q 010784          187 D-------HSIRLWWKG-----------SCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ  247 (501)
Q Consensus       187 d-------g~i~vwd~~-----------~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  247 (501)
                      +       ..+.||...           .++..+. .+-+.|.|+.|.    |++..+++-. |..|.+|++........
T Consensus        85 ~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~----Pns~klasm~-dn~i~l~~l~ess~~va  159 (370)
T KOG1007|consen   85 DTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWE----PNSDKLASMD-DNNIVLWSLDESSKIVA  159 (370)
T ss_pred             ccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEc----CCCCeeEEec-cCceEEEEcccCcchhe
Confidence            3       236789611           1222332 455689999997    7888888765 78999999998765211


Q ss_pred             ccceeeccCCCCceeEEEEee-cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784          248 QALKATLYGHEKPIKLMSVAG-HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS  326 (501)
Q Consensus       248 ~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (501)
                      ......-.++....++-+|+| ++++.+++. .|+++..||+++.+....                              
T Consensus       160 ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s------------------------------  208 (370)
T KOG1007|consen  160 EVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS------------------------------  208 (370)
T ss_pred             eecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcc------------------------------
Confidence            111122233566778889998 467777665 578999999998753221                              


Q ss_pred             EEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784          327 VVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-  403 (501)
Q Consensus       327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-  403 (501)
                                   .-..|...|..+.|+|+ ..+|+++++|+ |+|||.++.+     .++.++.+|...|.++.|+|. 
T Consensus       209 -------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  209 -------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             -------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEecCcc
Confidence                         12357888999999998 56788888888 9999999875     458999999999999999998 


Q ss_pred             -eEEEEecCCCcEEEEeCCCcc-----------------------------cccccccCCCCCCCcceeeeEeeccccEE
Q 010784          404 -KIVTGGRDDLRINIWETDTGM-----------------------------LANSLLCNYPEEADISTGCSAMAVSGCRI  453 (501)
Q Consensus       404 -~~l~~gs~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  453 (501)
                       +++.+|+.|..|.+|...+-.                             .+.++     ..|...|.+++||.-..++
T Consensus       271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty-----dehEDSVY~~aWSsadPWi  345 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY-----DEHEDSVYALAWSSADPWI  345 (370)
T ss_pred             ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc-----cccccceEEEeeccCCCee
Confidence             999999999999999764311                             11122     4688899999999866655


Q ss_pred             -EEeecCCCceEEEeeccCC
Q 010784          454 -VTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       454 -~s~~~d~~g~i~~w~~~~~  472 (501)
                       |+-++|  |++.|=.+...
T Consensus       346 FASLSYD--GRviIs~V~r~  363 (370)
T KOG1007|consen  346 FASLSYD--GRVIISSVPRF  363 (370)
T ss_pred             EEEeccC--ceEEeecCChh
Confidence             556655  99888776543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=7.9e-21  Score=167.98  Aligned_cols=271  Identities=15%  Similarity=0.225  Sum_probs=197.5

Q ss_pred             EEEeecCCeeeEEEEecccccccceecccCC--cceeEEEeeccCcCcccccCCCCcCcEEEE--eeCCCceEEec-CCc
Q 010784          123 IFSTQGSSIQNIKIDNFLSESYYRATLSDHK--ARITCMRLFPLHETSLFRSEPQRTENVLVT--SSCDHSIRLWW-KGS  197 (501)
Q Consensus       123 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~--~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s--~~~dg~i~vwd-~~~  197 (501)
                      ..+|+++  ..+++||+... .....+..|+  ..+.++.|+.             . +.|++  .+.|..+++|. .++
T Consensus         5 l~~aS~g--d~~kl~D~s~~-~~~~~~~~~t~~pg~~s~~w~~-------------~-n~lvvas~~gdk~~~~~~K~g~   67 (673)
T KOG4378|consen    5 LHVASTG--DKTKLSDFSDL-ETKSEYVHQTAEPGDFSFNWQR-------------R-NFLVVASMAGDKVMRIKEKDGK   67 (673)
T ss_pred             eeeeccC--CceEEeecccc-cCccccccCCCCCcceeeeccc-------------c-ceEEEeecCCceeEEEecccCC
Confidence            3445554  46889997652 2222232222  2389999986             3 33444  45678899997 333


Q ss_pred             ---eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEE
Q 010784          198 ---CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLL  274 (501)
Q Consensus       198 ---~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  274 (501)
                         ....-+.....-.|++..    ....++++|+..+.|+|||++...      +...+++|...|+++.++. ...+|
T Consensus        68 ~~~Vp~~~k~~gd~~~Cv~~~----s~S~y~~sgG~~~~Vkiwdl~~kl------~hr~lkdh~stvt~v~YN~-~Deyi  136 (673)
T KOG4378|consen   68 TPEVPRVRKLTGDNAFCVACA----SQSLYEISGGQSGCVKIWDLRAKL------IHRFLKDHQSTVTYVDYNN-TDEYI  136 (673)
T ss_pred             CCccceeeccccchHHHHhhh----hcceeeeccCcCceeeehhhHHHH------HhhhccCCcceeEEEEecC-Cccee
Confidence               222111122233344332    344799999999999999999543      5778899999999999996 67799


Q ss_pred             EEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC-CCcEEEEEE
Q 010784          275 VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC-KPILHSFSI  353 (501)
Q Consensus       275 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~v~~  353 (501)
                      ++++..|.|.|..+.++.....                                            +... ...|.-+.+
T Consensus       137 Asvs~gGdiiih~~~t~~~tt~--------------------------------------------f~~~sgqsvRll~y  172 (673)
T KOG4378|consen  137 ASVSDGGDIIIHGTKTKQKTTT--------------------------------------------FTIDSGQSVRLLRY  172 (673)
T ss_pred             EEeccCCcEEEEecccCccccc--------------------------------------------eecCCCCeEEEeec
Confidence            9999999999999988743211                                            1111 334567889


Q ss_pred             cCCCc-EEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCccccccc
Q 010784          354 MPSKS-LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSL  429 (501)
Q Consensus       354 ~~~~~-~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~  429 (501)
                      +|..+ +|.++++++ |.+||.......     ..-.+.|..+...|+|+|.  .++++.+.|..|.+||+.+.+...++
T Consensus       173 s~skr~lL~~asd~G~VtlwDv~g~sp~-----~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l  247 (673)
T KOG4378|consen  173 SPSKRFLLSIASDKGAVTLWDVQGMSPI-----FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL  247 (673)
T ss_pred             ccccceeeEeeccCCeEEEEeccCCCcc-----cchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence            98754 566777888 999999876543     4556789999999999998  88888889999999999988777777


Q ss_pred             ccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccceee
Q 010784          430 LCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLK  478 (501)
Q Consensus       430 ~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s  478 (501)
                      .      ...+...++|+++|.+|+.|.  ..|.|..||+.....+++.
T Consensus       248 ~------y~~Plstvaf~~~G~~L~aG~--s~G~~i~YD~R~~k~Pv~v  288 (673)
T KOG4378|consen  248 T------YSHPLSTVAFSECGTYLCAGN--SKGELIAYDMRSTKAPVAV  288 (673)
T ss_pred             e------ecCCcceeeecCCceEEEeec--CCceEEEEecccCCCCceE
Confidence            3      256789999999999999999  6799999999988887763

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.87  E-value=5.1e-21  Score=155.91  Aligned_cols=303  Identities=16%  Similarity=0.124  Sum_probs=200.1

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecc-cCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLS-DHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      .+..+...++|+.|.-++. +.+|...|.+++|++.+. +....+. .|...|+.+.-.|              +..+.+
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~-r~~~~~r~~g~~~it~lq~~p--------------~d~l~t   72 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE-RDLPLIRLFGRLFITNLQSIP--------------NDSLDT   72 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecC-ccchhhhhhccceeeceeecC--------------Ccchhh
Confidence            3446777799999998877 889999999999999984 7777777 6788899999888              478999


Q ss_pred             eeCCCceEEecCCceeeeccCCCCceEEEEeee---cCC--CCCCEEEEeeCCCc-EEEEeccCCCccccccceeeccCC
Q 010784          184 SSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKL---LGD--GSGKILASGGEDAT-VRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       184 ~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~---~~~--~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      -+.|+.+.+|+.... .....|.-.++++.|++   ...  +....++.-+.... +.+-|.....+  ....-..-.+.
T Consensus        73 qgRd~~L~lw~ia~s-~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq--v~i~dd~~~~K  149 (323)
T KOG0322|consen   73 QGRDPLLILWTIAYS-AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ--VQIADDSERSK  149 (323)
T ss_pred             cCCCceEEEEEccCc-ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccce--eEccCchhccc
Confidence            999999999982210 11122444455555542   111  11122222221111 11111111110  00001111234


Q ss_pred             CCceeEEEEeecC--CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784          258 EKPIKLMSVAGHK--SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM  335 (501)
Q Consensus       258 ~~~v~~l~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  335 (501)
                      .+.+.+..+....  .-++++|.++|.|.+||+.++..+..+..                                  ..
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~----------------------------------~~  195 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ----------------------------------SS  195 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc----------------------------------cc
Confidence            5667776644322  34677788999999999998743222111                                  11


Q ss_pred             ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC
Q 010784          336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL  413 (501)
Q Consensus       336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg  413 (501)
                      +.+.....|..+|.++.+.+.-..=++|+.+. +..|++.-....  ...-.+..-..-.|..+.+-|+ +++|+++.|+
T Consensus       196 kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs--lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~  273 (323)
T KOG0322|consen  196 KVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS--LQIRKEITLKNPGVSGVRIRPDGKILATAGWDH  273 (323)
T ss_pred             ccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc--ccccceEEecCCCccceEEccCCcEEeecccCC
Confidence            22233456899999999987654545566444 888888654211  0111222223456888999999 9999999999


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      +|+||+.++..++..+     ..|...|++++|+|+...+|+++  .|++|.+|++
T Consensus       274 RiRVyswrtl~pLAVL-----kyHsagvn~vAfspd~~lmAaas--kD~rISLWkL  322 (323)
T KOG0322|consen  274 RIRVYSWRTLNPLAVL-----KYHSAGVNAVAFSPDCELMAAAS--KDARISLWKL  322 (323)
T ss_pred             cEEEEEeccCCchhhh-----hhhhcceeEEEeCCCCchhhhcc--CCceEEeeec
Confidence            9999999999999999     67889999999999999999999  6799999985

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=9.1e-20  Score=146.91  Aligned_cols=269  Identities=13%  Similarity=0.146  Sum_probs=194.6

Q ss_pred             ceEEeeCCcEEEeecCCeeeEEEEeccc---------ccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          114 DHILLDNNDIFSTQGSSIQNIKIDNFLS---------ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~---------~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      -+-+++|.+++++.|+.+|.|-+..+.+         ++..+...++|.++|+.++|..               .+|++|
T Consensus        14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---------------~~Lls~   78 (325)
T KOG0649|consen   14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---------------DFLLSG   78 (325)
T ss_pred             HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---------------hheeec
Confidence            3446789999999999999999998753         3455666789999999999975               678887


Q ss_pred             eCCCceEEec---CCc--eee-----eccCCC-----CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccc
Q 010784          185 SCDHSIRLWW---KGS--CQR-----CFKGHN-----GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQA  249 (501)
Q Consensus       185 ~~dg~i~vwd---~~~--~~~-----~~~~h~-----~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  249 (501)
                      + ||.|+=|.   ..+  ..+     ...-|.     ..|++|-.-    |..+-++.++.|+.++.||++++.      
T Consensus        79 g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld----P~enSi~~AgGD~~~y~~dlE~G~------  147 (325)
T KOG0649|consen   79 G-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD----PSENSILFAGGDGVIYQVDLEDGR------  147 (325)
T ss_pred             c-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEec----cCCCcEEEecCCeEEEEEEecCCE------
Confidence            7 59999885   111  011     111222     357777764    555556666689999999999997      


Q ss_pred             ceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-----ecCCCceeeecCCCeEEEEeC
Q 010784          250 LKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-----SVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       250 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  324 (501)
                      ....+++|+..|.++.--. ....+++|++||++++||.++++.+..+......     .....+.+++.+.+-+++..|
T Consensus       148 i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG  226 (325)
T KOG0649|consen  148 IQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG  226 (325)
T ss_pred             EEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC
Confidence            5888999999999988743 4557999999999999999999877655443332     123345666777777766666


Q ss_pred             CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC
Q 010784          325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY  403 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  403 (501)
                      ..+.+|.+++.+....+.. ...+..+.|  +...+++++.++ +.-|.+..--.       ..........++..++..
T Consensus       227 p~lslwhLrsse~t~vfpi-pa~v~~v~F--~~d~vl~~G~g~~v~~~~l~Gvl~-------a~ip~~s~~c~s~s~~~~  296 (325)
T KOG0649|consen  227 PKLSLWHLRSSESTCVFPI-PARVHLVDF--VDDCVLIGGEGNHVQSYTLNGVLQ-------ANIPVESTACYSASWQTS  296 (325)
T ss_pred             CceeEEeccCCCceEEEec-ccceeEeee--ecceEEEeccccceeeeeeccEEE-------EeccCCccceeeecccCC
Confidence            7999999999998887764 567778888  455788888888 99998864211       222222334556655544


Q ss_pred             --eEEEEecCCCcEEEEe
Q 010784          404 --KIVTGGRDDLRINIWE  419 (501)
Q Consensus       404 --~~l~~gs~dg~i~iwd  419 (501)
                        +++..++..+++.|+.
T Consensus       297 p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  297 PIKFISIAGFSNKLHILK  314 (325)
T ss_pred             ceEEEEecccceeeeeee
Confidence              7887777888887763

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2e-20  Score=158.04  Aligned_cols=279  Identities=16%  Similarity=0.187  Sum_probs=193.3

Q ss_pred             EEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CC--ce
Q 010784          123 IFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KG--SC  198 (501)
Q Consensus       123 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~--~~  198 (501)
                      ..+|++-..|.|++||..++ +.+..+++|+..++.++|....           ....+.+|+.||+|++||  ..  ..
T Consensus        41 ~~vav~lSngsv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~d-----------s~h~v~s~ssDG~Vr~wD~Rs~~e~a  108 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG-QLLEEFKGPPATTNGVRFISCD-----------SPHGVISCSSDGTVRLWDIRSQAESA  108 (376)
T ss_pred             eeEEEEecCCeEEEEeccch-hhhheecCCCCcccceEEecCC-----------CCCeeEEeccCCeEEEEEeecchhhh
Confidence            67888999999999999995 8899999999999999998631           357899999999999999  22  22


Q ss_pred             eeeccCCC-CceEEEEeeecCCCCCCEEEEee----CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeE
Q 010784          199 QRCFKGHN-GPVSTLSDKLLGDGSGKILASGG----EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFL  273 (501)
Q Consensus       199 ~~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~  273 (501)
                      ...+..+. .+..|++.    +..++.+++|.    .+-.|.+||++..++    .+......|...|++++|+|.+.++
T Consensus       109 ~~~~~~~~~~~f~~ld~----nck~~ii~~GtE~~~s~A~v~lwDvR~~qq----~l~~~~eSH~DDVT~lrFHP~~pnl  180 (376)
T KOG1188|consen  109 RISWTQQSGTPFICLDL----NCKKNIIACGTELTRSDASVVLWDVRSEQQ----LLRQLNESHNDDVTQLRFHPSDPNL  180 (376)
T ss_pred             heeccCCCCCcceEeec----cCcCCeEEeccccccCceEEEEEEeccccc----hhhhhhhhccCcceeEEecCCCCCe
Confidence            33444454 46677765    24677888875    467899999998764    1334456899999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEE
Q 010784          274 LVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSI  353 (501)
Q Consensus       274 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~  353 (501)
                      |++||.||.|.++|+........                                         +...-.|...|.++.|
T Consensus       181 LlSGSvDGLvnlfD~~~d~EeDa-----------------------------------------L~~viN~~sSI~~igw  219 (376)
T KOG1188|consen  181 LLSGSVDGLVNLFDTKKDNEEDA-----------------------------------------LLHVINHGSSIHLIGW  219 (376)
T ss_pred             EEeecccceEEeeecCCCcchhh-----------------------------------------HHHhhcccceeeeeee
Confidence            99999999999999986532111                                         1112235677899999


Q ss_pred             cCCC-cEEEEEc-CCcEEEEecCCCCCCCCCCCc-cc------ccCcccCeEEEEecCC---eEEEEecCCCcEEEEeCC
Q 010784          354 MPSK-SLICTGG-IGKAMTWDIRRSQDAVKPQPM-AE------LDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       354 ~~~~-~~l~~~~-~d~i~iwd~~~~~~~~~~~~~-~~------~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~  421 (501)
                      ..++ +.|.+-+ .....+|++..+........- ..      ......-|.+.  +|.   ...++|+.-+...++-+.
T Consensus       220 ~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~--~~~~~~~~~l~g~~~n~~~~~~~~  297 (376)
T KOG1188|consen  220 LSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH--SPGDKDTCALAGTDSNKGTIFPLV  297 (376)
T ss_pred             ecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc--cCCCcceEEEeccccCceeEEEee
Confidence            8876 3355555 444999999987654110000 00      00001112222  233   344444334555555433


Q ss_pred             ---Cc---ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          422 ---TG---MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       422 ---~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                         ++   +.+..+.    .+|...|.++.|...+.++.+||  +||.+.+|...
T Consensus       298 ~~~s~~~~~~~a~l~----g~~~eiVR~i~~~~~~~~l~TGG--EDG~l~~Wk~~  346 (376)
T KOG1188|consen  298 DTSSGSLLTEPAILQ----GGHEEIVRDILFDVKNDVLYTGG--EDGLLQAWKVE  346 (376)
T ss_pred             ecccccccCcccccc----CCcHHHHHHHhhhcccceeeccC--CCceEEEEecC
Confidence               23   3333442    45677899999999999999999  88999999963

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=3.1e-20  Score=178.43  Aligned_cols=293  Identities=16%  Similarity=0.233  Sum_probs=207.6

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccC---CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDH---KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h---~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      ++...+.|+|-...++++...-.|.|||.+.+ +....+..+   ...|+.+.+...-           |..++++|+.|
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~-~~l~~F~n~~~~~t~Vs~l~liNe~-----------D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKG-RLLNGFDNGAFPDTRVSDLELINEQ-----------DDALLLTASSD 1132 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccC-ceeccccCCCCCCCccceeeeeccc-----------chhheeeeccC
Confidence            35778889999999999998999999999985 555555443   3569999987632           67899999999


Q ss_pred             CceEEec---CC----ceeeecc---CC----CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784          188 HSIRLWW---KG----SCQRCFK---GH----NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       188 g~i~vwd---~~----~~~~~~~---~h----~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      |.|+||+   ..    +.+..+.   ++    .+.=.-+.|.   ...|.+++ ++.-..|+|||.+....     +...
T Consensus      1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq---Q~~G~Ll~-tGd~r~IRIWDa~~E~~-----~~di 1203 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ---QQSGHLLV-TGDVRSIRIWDAHKEQV-----VADI 1203 (1387)
T ss_pred             ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehh---hhCCeEEe-cCCeeEEEEEeccccee-----Eeec
Confidence            9999997   21    1222111   11    1111234553   23454444 45578999999998663     2223


Q ss_pred             ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784          254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR  333 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  333 (501)
                      ..+....|+++.-....++++++|..||.|++||.+.....                                       
T Consensus      1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--------------------------------------- 1244 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--------------------------------------- 1244 (1387)
T ss_pred             ccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc---------------------------------------
Confidence            34456678877776656899999999999999999875321                                       


Q ss_pred             CCceEeeeccCCCc--EEEEEEcCCCcE-EEEEcCCc-EEEEecCCCCCCCCCCCcccccCc---ccCeEEEEecCC-eE
Q 010784          334 TMQKVMTPAICKPI--LHSFSIMPSKSL-ICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH---VGSVTQLHMDPY-KI  405 (501)
Q Consensus       334 ~~~~~~~~~~~~~~--v~~v~~~~~~~~-l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~-~~  405 (501)
                        ..+...+.|...  |..+.+.+.|-- |++|+.+| |++||++.....    ...+...|   .+..+++..++. .+
T Consensus      1245 --s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e----~~~~iv~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1245 --SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE----TFLTIVAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred             --ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc----ccceeeeccccCccceeeeeccCCCe
Confidence              123345567666  999999887654 99999888 999999985321    11222222   235999999999 99


Q ss_pred             EEEecCCCcEEEEeCCCcccccccccC--CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          406 VTGGRDDLRINIWETDTGMLANSLLCN--YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       406 l~~gs~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      +|+|+. +.|+||++. |+.+..+...  ........+.+++|+|-.-++|+|+  .|..|.+|....++
T Consensus      1319 iAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~--~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS--ADSTVSIYSCEKPR 1384 (1387)
T ss_pred             eeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhcc--CCceEEEeecCCcC
Confidence            999977 999999985 5555555321  1233456679999999999999997  67999999877654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=1.7e-19  Score=165.90  Aligned_cols=251  Identities=13%  Similarity=0.104  Sum_probs=172.4

Q ss_pred             cEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          179 NVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      +.+++++.|+.|++||  +++.+..+..+.. +.+++|+    +++..+ ++++.++.|++||..+++.      ...+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~----~dg~~l~~~~~~~~~v~~~d~~~~~~------~~~~~   70 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLS----KDGKLLYVCASDSDTIQVIDLATGEV------IGTLP   70 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEEC----CCCCEEEEEECCCCeEEEEECCCCcE------EEecc
Confidence            5789999999999999  6777777776544 6788996    788766 5677889999999988753      44444


Q ss_pred             CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784          256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM  335 (501)
Q Consensus       256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  335 (501)
                      .+.. +..+.++|++..++++++.++.|++||+++.+.+.                                        
T Consensus        71 ~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~----------------------------------------  109 (300)
T TIGR03866        71 SGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA----------------------------------------  109 (300)
T ss_pred             CCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe----------------------------------------
Confidence            4433 46788987444444555678999999998753211                                        


Q ss_pred             ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecC
Q 010784          336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRD  411 (501)
Q Consensus       336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~  411 (501)
                          .+. +...+.+++|+|++.++++++.+.  +.+||..+.+..      .... ....+..++|+|+ + +++++..
T Consensus       110 ----~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~------~~~~-~~~~~~~~~~s~dg~~l~~~~~~  177 (300)
T TIGR03866       110 ----EIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV------DNVL-VDQRPRFAEFTADGKELWVSSEI  177 (300)
T ss_pred             ----Eee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE------EEEE-cCCCccEEEECCCCCEEEEEcCC
Confidence                111 123356799999999999888654  778898875432      2222 1234577899999 5 4456557


Q ss_pred             CCcEEEEeCCCcccccccccCCCCCC--CcceeeeEeeccccEEEEeecCCCceEEEeeccC------------------
Q 010784          412 DLRINIWETDTGMLANSLLCNYPEEA--DISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN------------------  471 (501)
Q Consensus       412 dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~------------------  471 (501)
                      ++.|++||+.+++.+..+..+....+  ......++|+|++++++++.. .++.|.+||...                  
T Consensus       178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~  256 (300)
T TIGR03866       178 GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-PANRVAVVDAKTYEVLDYLLVGQRVWQLAF  256 (300)
T ss_pred             CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-CCCeEEEEECCCCcEEEEEEeCCCcceEEE
Confidence            99999999999988776643211111  112346889999998766543 356799998542                  


Q ss_pred             --Cccceee-cCCCCceeeecccCCC
Q 010784          472 --ATCPVLK-HEVQNDSKFWGPQCYS  494 (501)
Q Consensus       472 --~~~~~~s-~~~d~~~~~w~~~~~~  494 (501)
                        .+..+++ .+.++.+++|++....
T Consensus       257 ~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       257 TPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCc
Confidence              3333444 4568899999987654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.86  E-value=2.1e-21  Score=181.81  Aligned_cols=277  Identities=18%  Similarity=0.249  Sum_probs=210.5

Q ss_pred             ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      .|..+|.|..|+..|.++++|+.|..++||..+++ .+.....||.+.|+.++.+.             ++.++++++.|
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-~~lAs~rGhs~ditdlavs~-------------~n~~iaaaS~D  253 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-RCLASCRGHSGDITDLAVSS-------------NNTMIAAASND  253 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccch-hhhccCCCCccccchhccch-------------hhhhhhhcccC
Confidence            35556999999999999999999999999999985 89999999999999999988             78899999999


Q ss_pred             CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC-CCCceeEE
Q 010784          188 HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG-HEKPIKLM  264 (501)
Q Consensus       188 g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l  264 (501)
                      ..|++|-  .+..+..+.+|++.|++++|+|    -.    +.+.||++++||.+-...   ......... ...-+.++
T Consensus       254 ~vIrvWrl~~~~pvsvLrghtgavtaiafsP----~~----sss~dgt~~~wd~r~~~~---~y~prp~~~~~~~~~~s~  322 (1113)
T KOG0644|consen  254 KVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP----RA----SSSDDGTCRIWDARLEPR---IYVPRPLKFTEKDLVDSI  322 (1113)
T ss_pred             ceEEEEecCCCchHHHHhccccceeeeccCc----cc----cCCCCCceEecccccccc---ccCCCCCCcccccceeee
Confidence            9999998  8888999999999999999983    22    678899999999982111   000111111 12344555


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC  344 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  344 (501)
                      .+. +.+..++|++.|+.-..|.+.....                     .                             
T Consensus       323 ~~~-~~~~~f~Tgs~d~ea~n~e~~~l~~---------------------~-----------------------------  351 (1113)
T KOG0644|consen  323 LFE-NNGDRFLTGSRDGEARNHEFEQLAW---------------------R-----------------------------  351 (1113)
T ss_pred             ecc-ccccccccccCCcccccchhhHhhh---------------------h-----------------------------
Confidence            555 3677899999999888887654311                     0                             


Q ss_pred             CCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeC
Q 010784          345 KPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWET  420 (501)
Q Consensus       345 ~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~  420 (501)
                      ...+.-+..+.+ ..+.+++-.+. +.+|++.++...      +.+.+|...+..+.++|.  ++..+++.||...|||+
T Consensus       352 ~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~------H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  352 SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL------HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             ccceEEEeccccccccceeeeeeeEeeeeecccchhh------hhhcccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence            000111111112 13455555666 999999998765      889999999999999998  77777789999999999


Q ss_pred             CCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          421 DTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      -.|.+++.+.    .+ ...+...+||+||..++..-  .-|.+.+.....+.
T Consensus       426 ~eg~pik~y~----~g-h~kl~d~kFSqdgts~~lsd--~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  426 WEGIPIKHYF----IG-HGKLVDGKFSQDGTSIALSD--DHGQLYILGTGQSK  471 (1113)
T ss_pred             ccCCcceeee----cc-cceeeccccCCCCceEecCC--CCCceEEeccCCCc
Confidence            9999888875    33 34556679999999998865  67999998866544

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=4.9e-20  Score=166.69  Aligned_cols=294  Identities=14%  Similarity=0.183  Sum_probs=213.0

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      .+...+.||++.|.+|...|             .|..|++|+.||+|+||.  ++.|++++. ..+.|.|++|.|  .++
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp-------------~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P--~~~  454 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDP-------------SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNP--LSD  454 (733)
T ss_pred             eeeeeEeccCCeEEEEEecC-------------CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecC--CCC
Confidence            44566789999999999998             899999999999999999  999999887 466899999974  233


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEE----EeCCCeEEEEECCCCccccce
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT----ISKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s----~s~dg~v~vwd~~~~~~~~~~  297 (501)
                      -..|+++- ...+.|-+..-+..      +..  +.+            ...|++    ...++.+..|.-...+.....
T Consensus       455 ~~vLAvA~-~~~~~ivnp~~G~~------~e~--~~t------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~  513 (733)
T KOG0650|consen  455 LCVLAVAV-GECVLIVNPIFGDR------LEV--GPT------------KELLASAPNESEPDAAVVTWSRASLDELEKG  513 (733)
T ss_pred             ceeEEEEe-cCceEEeCccccch------hhh--cch------------hhhhhcCCCccCCcccceeechhhhhhhccc
Confidence            33455443 44465655443321      000  000            001111    123456667765433221111


Q ss_pred             ecccceecCCCceeeecCCCeEEEEeC------CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEE
Q 010784          298 CCVGMTSVPGVPVDMKCHESMLYIASG------SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTW  371 (501)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iw  371 (501)
                       ....+.....+..+.++..+-++++-      ..|.+.++.......-|+.-.+.|.++.|+|...+|++++...|+||
T Consensus       514 -v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiY  592 (733)
T KOG0650|consen  514 -VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIY  592 (733)
T ss_pred             -eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEE
Confidence             11223556667788888877776642      27999999887777777666888999999999999999999889999


Q ss_pred             ecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCC-cccccccccCCCCCCCcceeeeEeec
Q 010784          372 DIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT-GMLANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       372 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                      |+.....+      ..+......|.+++++|.  +++++ +.|+.+..||+.- .++.+++     ..|...++.++|++
T Consensus       593 dL~kqelv------KkL~tg~kwiS~msihp~GDnli~g-s~d~k~~WfDldlsskPyk~l-----r~H~~avr~Va~H~  660 (733)
T KOG0650|consen  593 DLSKQELV------KKLLTGSKWISSMSIHPNGDNLILG-SYDKKMCWFDLDLSSKPYKTL-----RLHEKAVRSVAFHK  660 (733)
T ss_pred             ehhHHHHH------HHHhcCCeeeeeeeecCCCCeEEEe-cCCCeeEEEEcccCcchhHHh-----hhhhhhhhhhhhcc
Confidence            99985543      666666788999999997  66555 6999999999975 4667777     56788999999999


Q ss_pred             cccEEEEeecCCCceEEEee----------------------------------ccCCccceeecCCCCceeeec
Q 010784          449 SGCRIVTASYGEPGLLQFRD----------------------------------FSNATCPVLKHEVQNDSKFWG  489 (501)
Q Consensus       449 ~g~~l~s~~~d~~g~i~~w~----------------------------------~~~~~~~~~s~~~d~~~~~w~  489 (501)
                      .-.++++|+  +||.+.|+.                                  +-+.+..+.+++.||++++|.
T Consensus       661 ryPLfas~s--dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  661 RYPLFASGS--DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             ccceeeeec--CCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            999999999  679988875                                  223444567889999999884

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=4.6e-21  Score=172.31  Aligned_cols=256  Identities=24%  Similarity=0.389  Sum_probs=193.9

Q ss_pred             eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC----------CceeeeccCCCCceEEEEeee
Q 010784          147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK----------GSCQRCFKGHNGPVSTLSDKL  216 (501)
Q Consensus       147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~----------~~~~~~~~~h~~~v~~l~~s~  216 (501)
                      .++..|.+.|+.++|.|             ....|++++.||++++|+.          -+.+.+|++|.++|.|++.. 
T Consensus       288 ~tl~s~~d~ir~l~~~~-------------sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-  353 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHP-------------SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-  353 (577)
T ss_pred             eeeecchhhhhhhhcCC-------------CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-
Confidence            36678999999999988             6789999999999999972          24567899999999999996 


Q ss_pred             cCCCCCCEEEEeeCCCcEEEEeccCCCcc----ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784          217 LGDGSGKILASGGEDATVRLWSLSSSGKR----GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS  292 (501)
Q Consensus       217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~  292 (501)
                         .++..+++|+.||+|+.|++.....+    ........+.||++.|+.++++. ....|++++.||++++|+.....
T Consensus       354 ---~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~  429 (577)
T KOG0642|consen  354 ---SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEES  429 (577)
T ss_pred             ---CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcC
Confidence               89999999999999999977532211    11234567889999999999997 66779999999999999987765


Q ss_pred             cccceecccceecCCCceeeecCCCeEEEE-eCC---cEEEEEcCCCceEeeeccC-------CCcEEEEEEcCCCcEEE
Q 010784          293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIA-SGS---SVVTIDLRTMQKVMTPAIC-------KPILHSFSIMPSKSLIC  361 (501)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~i~~~d~~~~~~~~~~~~~-------~~~v~~v~~~~~~~~l~  361 (501)
                      .    .........+.+..+++........ +..   .-.+++++....+..+...       ...+..+..+|.+.+.+
T Consensus       430 ~----~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~  505 (577)
T KOG0642|consen  430 P----CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF  505 (577)
T ss_pred             c----cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence            4    1122224445556665544432222 111   2333444444444433321       23467788899999999


Q ss_pred             EEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccc
Q 010784          362 TGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       362 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                      ++.+++ |+++|..+++.+      +....|...++++++.|+ .++.+|+.||.+++|.+....++....
T Consensus       506 ~~hed~~Ir~~dn~~~~~l------~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~  570 (577)
T KOG0642|consen  506 TAHEDRSIRFFDNKTGKIL------HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST  570 (577)
T ss_pred             ecccCCceecccccccccc------hheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence            999999 999999997654      888899999999999999 999999999999999998777766553

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=2.2e-20  Score=156.99  Aligned_cols=246  Identities=17%  Similarity=0.273  Sum_probs=179.7

Q ss_pred             CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce
Q 010784          121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC  198 (501)
Q Consensus       121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~  198 (501)
                      ...++|.|+.-|.|+|.|..++ ++...+.+|.+.|+.+.|.|.            +.++++++|.|.+|++||  +..|
T Consensus       104 ~~p~la~~G~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~------------~~qlvls~SkD~svRlwnI~~~~C  170 (385)
T KOG1034|consen  104 GNPFLAAGGYLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPD------------RPQLVLSASKDHSVRLWNIQTDVC  170 (385)
T ss_pred             CCeeEEeecceeEEEEEecchh-hhccceeccCccchhhhcCCC------------CCcEEEEecCCceEEEEeccCCeE
Confidence            3678999999999999999985 899999999999999999995            568999999999999999  7788


Q ss_pred             eeec---cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc----------------------ccceee
Q 010784          199 QRCF---KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ----------------------QALKAT  253 (501)
Q Consensus       199 ~~~~---~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~----------------------~~~~~~  253 (501)
                      +..|   .+|.+.|.++.|+    .+|.++++++.|.++++|++...+....                      .+...+
T Consensus       171 v~VfGG~egHrdeVLSvD~~----~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst  246 (385)
T KOG1034|consen  171 VAVFGGVEGHRDEVLSVDFS----LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST  246 (385)
T ss_pred             EEEecccccccCcEEEEEEc----CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence            8776   5799999999997    8999999999999999999984322000                      001112


Q ss_pred             ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC-CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784          254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL  332 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  332 (501)
                      -.-|...|.|+.|.   ++++++-|-++.|..|.... ++.+....     .....                        
T Consensus       247 ~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vk-----p~es~------------------------  294 (385)
T KOG1034|consen  247 TDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVK-----PPESA------------------------  294 (385)
T ss_pred             cccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccC-----CCccc------------------------
Confidence            34577888888885   36899999999999998732 21111000     00000                        


Q ss_pred             CCCceEeeeccCCCcEEE--EEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc--CcccCeEEEEecCC-eEE
Q 010784          333 RTMQKVMTPAICKPILHS--FSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD--GHVGSVTQLHMDPY-KIV  406 (501)
Q Consensus       333 ~~~~~~~~~~~~~~~v~~--v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~-~~l  406 (501)
                        ...+..+.-....|.-  .+|.|-+++||.|...+ +.+||+++.+..    ...++.  .....|...+|+.+ .++
T Consensus       295 --~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~----~~ttl~~s~~~~tVRQ~sfS~dgs~l  368 (385)
T KOG1034|consen  295 --TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP----KCTTLTHSKSGSTVRQTSFSRDGSIL  368 (385)
T ss_pred             --eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc----cCceEEeccccceeeeeeecccCcEE
Confidence              0111223333344444  45566689999999888 999999987653    112222  12457889999999 777


Q ss_pred             EEecCCCcEEEEeCC
Q 010784          407 TGGRDDLRINIWETD  421 (501)
Q Consensus       407 ~~gs~dg~i~iwd~~  421 (501)
                      +....|++|--||..
T Consensus       369 v~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  369 VLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEeCCCcEEEEEee
Confidence            777799999999864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.85  E-value=3.4e-19  Score=147.34  Aligned_cols=286  Identities=17%  Similarity=0.217  Sum_probs=202.6

Q ss_pred             eEEEecCCCCceEEee---CCcEEEeecCC----eeeEEEEecccc-ccc-ceecccCCcceeEEEeeccCcCcccccCC
Q 010784          104 VCFYSVAKPHDHILLD---NNDIFSTQGSS----IQNIKIDNFLSE-SYY-RATLSDHKARITCMRLFPLHETSLFRSEP  174 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~---~~~~~~~~g~~----d~~i~vw~~~~~-~~~-~~~~~~h~~~V~~~~~~~~~~~~~~~~~~  174 (501)
                      ..-|..+-++..+.|+   ..+-++|.|+.    .+.|.|-.+... .+. ...--.|.-+++.+.|.|+...       
T Consensus        38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g-------  110 (364)
T KOG0290|consen   38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKG-------  110 (364)
T ss_pred             EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccc-------
Confidence            4455666778888888   34567788875    355555544321 121 1222478899999999994210       


Q ss_pred             CCcCcEEEEeeCCCceEEecCC---ce---eee-----ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCC
Q 010784          175 QRTENVLVTSSCDHSIRLWWKG---SC---QRC-----FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG  243 (501)
Q Consensus       175 ~~~~~~l~s~~~dg~i~vwd~~---~~---~~~-----~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~  243 (501)
                       ...++|||++  -.+|+|..+   ..   ...     -..+.+++++..|.   .-+.+++.+++-|-+..|||++++.
T Consensus       111 -~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWn---e~dp~~igtSSiDTTCTiWdie~~~  184 (364)
T KOG0290|consen  111 -VYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWN---EVDPNLIGTSSIDTTCTIWDIETGV  184 (364)
T ss_pred             -cCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccc---cCCcceeEeecccCeEEEEEEeecc
Confidence             0125677665  469999622   11   111     12467899999997   5677899999999999999999862


Q ss_pred             ccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe
Q 010784          244 KRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS  323 (501)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (501)
                      .   ......+-.|..+|..|+|.....++|++.+.||.|+++|++..+...                            
T Consensus       185 ~---~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST----------------------------  233 (364)
T KOG0290|consen  185 S---GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST----------------------------  233 (364)
T ss_pred             c---cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce----------------------------
Confidence            1   113456778999999999997667899999999999999999764210                            


Q ss_pred             CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEe
Q 010784          324 GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM  400 (501)
Q Consensus       324 ~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  400 (501)
                                   .+..-.....+...++|+++ -+++|+-..|.  |.|.|++...     .++..+++|.+.|+.++|
T Consensus       234 -------------IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-----tpva~L~~H~a~VNgIaW  295 (364)
T KOG0290|consen  234 -------------IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-----TPVARLRNHQASVNGIAW  295 (364)
T ss_pred             -------------EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-----cceehhhcCcccccceEe
Confidence                         11111112456778888874 67888877555  9999999874     568999999999999999


Q ss_pred             cCC--eEEEEecCCCcEEEEeCCCccc------ccccccCCCCCCCcceeeeEeec-cccEEEEee
Q 010784          401 DPY--KIVTGGRDDLRINIWETDTGML------ANSLLCNYPEEADISTGCSAMAV-SGCRIVTAS  457 (501)
Q Consensus       401 ~~~--~~l~~gs~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~  457 (501)
                      .|.  ..+++++.|..+.+||+.+.-.      +..+      ...+.|+.+.|++ .+.+|+.+.
T Consensus       296 aPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay------~a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  296 APHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY------TAGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             cCCCCceeeecCCcceEEEEecccccccCCCCchhhh------hccceeeeeeecccCCCEEEEEe
Confidence            998  7788888999999999976321      2222      1367899999995 567887775

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=5.7e-19  Score=167.01  Aligned_cols=278  Identities=13%  Similarity=0.119  Sum_probs=200.5

Q ss_pred             eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C-Cce--ee----ecc
Q 010784          132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K-GSC--QR----CFK  203 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~-~~~--~~----~~~  203 (501)
                      +.+.+|++.....+...+ .-...|+|+.|+|.            +.++++.|..+|+|.+|| . +..  ..    ...
T Consensus       222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~------------~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~  288 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPF------------DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEV  288 (555)
T ss_pred             ceEEEEecCCCCCceEEE-ecCCceeEEEeccC------------CcceEEeeccCceEEEEEccCCCCCCCcccccccc
Confidence            479999998754555554 34567999999997            789999999999999999 2 211  11    123


Q ss_pred             CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc------CCCCceeEEEEeecCCeEEEEE
Q 010784          204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY------GHEKPIKLMSVAGHKSFLLVTI  277 (501)
Q Consensus       204 ~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~l~s~  277 (501)
                      .|..+++.+.|..  +..+.-+++++.||.|..|+++.-..+.+..+.....      .....+++++|.+.+...|+.|
T Consensus       289 sh~~~v~~vvW~~--~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG  366 (555)
T KOG1587|consen  289 SHSEPVTAVVWLQ--NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG  366 (555)
T ss_pred             cCCcCeEEEEEec--cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE
Confidence            6889999999963  3333669999999999999887654422222222222      2334688999999899999999


Q ss_pred             eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784          278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK  357 (501)
Q Consensus       278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~  357 (501)
                      +.+|.|..=+-...+....                                    ...+....+..|.++|+++.++|-+
T Consensus       367 Te~G~v~~~~r~g~~~~~~------------------------------------~~~~~~~~~~~h~g~v~~v~~nPF~  410 (555)
T KOG1587|consen  367 TEEGKVYKGCRKGYTPAPE------------------------------------VSYKGHSTFITHIGPVYAVSRNPFY  410 (555)
T ss_pred             cCCcEEEEEeccCCccccc------------------------------------ccccccccccccCcceEeeecCCCc
Confidence            9999987744333221100                                    0012233556689999999999975


Q ss_pred             -cEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcc--cccccccC
Q 010784          358 -SLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGM--LANSLLCN  432 (501)
Q Consensus       358 -~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~--~~~~~~~~  432 (501)
                       .++.++++.+++||.....     ..++..+..+...|++++|||.  .+++++..||.|.+||+....  ++.+..  
T Consensus       411 ~k~fls~gDW~vriWs~~~~-----~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~--  483 (555)
T KOG1587|consen  411 PKNFLSVGDWTVRIWSEDVI-----ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK--  483 (555)
T ss_pred             cceeeeeccceeEeccccCC-----CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc--
Confidence             4555566555999998832     2445778888888999999999  899999999999999997543  333332  


Q ss_pred             CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          433 YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       433 ~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                         ......+.+.|++.|+.|+.|.  ..|.+++|++...
T Consensus       484 ---~~~~~l~~~~~s~~g~~lavGd--~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  484 ---VCSPALTRVRWSPNGKLLAVGD--ANGTTHILKLSES  518 (555)
T ss_pred             ---ccccccceeecCCCCcEEEEec--CCCcEEEEEcCch
Confidence               2255677888999999999998  6799999998643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.3e-19  Score=154.35  Aligned_cols=287  Identities=13%  Similarity=0.117  Sum_probs=205.9

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--------CCceeeec-cCCCCceEEEEe
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--------KGSCQRCF-KGHNGPVSTLSD  214 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--------~~~~~~~~-~~h~~~v~~l~~  214 (501)
                      -+.+-+.+|.+.|+++.|+.             ++++|++|+.|..++||+        +.+.+... ..|...|.|++|
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~-------------N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F  113 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSH-------------NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF  113 (609)
T ss_pred             hhhhhhhhhccccceeeecc-------------CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE
Confidence            34556779999999999998             899999999999999997        22333333 246789999999


Q ss_pred             eecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc--CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784          215 KLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY--GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS  292 (501)
Q Consensus       215 s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~  292 (501)
                      .    ..+.++++|..+++|...|+++.+.      +..+.  ...+.|..+..+|. .+.|++.+.++.|.+||.+..+
T Consensus       114 ~----~~N~~~~SG~~~~~VI~HDiEt~qs------i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  114 D----LENRFLYSGERWGTVIKHDIETKQS------IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             c----cCCeeEecCCCcceeEeeeccccee------eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCC
Confidence            5    7888999999999999999998763      33332  23458999999995 7789999999999999999875


Q ss_pred             cccceecccceecCCCceeeecCCC---eEEEEe-CCcEEEEEcCCCceE-ee------eccCCCcEEEEEEcCCCcEEE
Q 010784          293 AVRSSCCVGMTSVPGVPVDMKCHES---MLYIAS-GSSVVTIDLRTMQKV-MT------PAICKPILHSFSIMPSKSLIC  361 (501)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~i~~~d~~~~~~~-~~------~~~~~~~v~~v~~~~~~~~l~  361 (501)
                      ......+..  ........+.++|.   .+.++. .+.+.+||.+..+.. ..      ++.....-.++.|+|+|+.+.
T Consensus       183 ~~~~~~~~A--N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m  260 (609)
T KOG4227|consen  183 NPISLVLPA--NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM  260 (609)
T ss_pred             CCCceeeec--CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence            322222211  22333344445443   222222 247999999876542 11      111122346789999999999


Q ss_pred             EEcCCc-EEEEecCCCCCCCCCCCcccccC------cccCeEEEEecCCeEEEEecCCCcEEEEeCCCcc----------
Q 010784          362 TGGIGK-AMTWDIRRSQDAVKPQPMAELDG------HVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGM----------  424 (501)
Q Consensus       362 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~----------  424 (501)
                      +--.+. -.+||+.+..+.     +..+..      ....+.+++|..++-+++||.+-.|++|.+....          
T Consensus       261 siRR~~~P~~~D~~S~R~~-----V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~  335 (609)
T KOG4227|consen  261 SIRRGKCPLYFDFISQRCF-----VLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGH  335 (609)
T ss_pred             hhhccCCCEEeeeecccce-----eEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCc
Confidence            888777 778998875442     222221      1235778889888668899999999999885311          


Q ss_pred             -------------cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          425 -------------LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       425 -------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                                   .+..+     .+|.+.++.+.|+|...+|++.+  -...+++|.
T Consensus       336 ~~~~~~~~~~i~~~~~VL-----rGHRSv~NQVRF~~H~~~l~SSG--VE~~~KlWS  385 (609)
T KOG4227|consen  336 DEEEMPSEIFIEKELTVL-----RGHRSVPNQVRFSQHNNLLVSSG--VENSFKLWS  385 (609)
T ss_pred             chhhCchhheecceeEEE-----ecccccccceeecCCcceEeccc--hhhheeccc
Confidence                         11222     57888999999999999999988  568999997

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=1.7e-19  Score=165.25  Aligned_cols=272  Identities=14%  Similarity=0.151  Sum_probs=204.1

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      -|+.++|-|||..++.+.. ..+.+||...| ..+.++++|++.|+|++|+.             ||..+++|+.|..|.
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG-~llqtLKgHKDtVycVAys~-------------dGkrFASG~aDK~VI   78 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDG-TLLQPLKGHKDTVYCVAYAK-------------DGKRFASGSADKSVI   78 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCc-ccccccccccceEEEEEEcc-------------CCceeccCCCceeEE
Confidence            4889999999988776543 46789999986 88999999999999999999             899999999999999


Q ss_pred             Eec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784          192 LWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK  270 (501)
Q Consensus       192 vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  270 (501)
                      +|+ .-+-+..+ .|+..|.||.|.    |-...|++++.+ ..-+|......       +...+ ....+.+.+|.. +
T Consensus        79 ~W~~klEG~LkY-SH~D~IQCMsFN----P~~h~LasCsLs-dFglWS~~qK~-------V~K~k-ss~R~~~CsWtn-D  143 (1081)
T KOG1538|consen   79 IWTSKLEGILKY-SHNDAIQCMSFN----PITHQLASCSLS-DFGLWSPEQKS-------VSKHK-SSSRIICCSWTN-D  143 (1081)
T ss_pred             Eecccccceeee-ccCCeeeEeecC----chHHHhhhcchh-hccccChhhhh-------HHhhh-hheeEEEeeecC-C
Confidence            998 22222233 599999999995    788899998864 57789876543       22222 345677888884 8


Q ss_pred             CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEE
Q 010784          271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHS  350 (501)
Q Consensus       271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~  350 (501)
                      +++++.|-.+|+|.+-+-...+.+                                          .+..-.+...+|.+
T Consensus       144 GqylalG~~nGTIsiRNk~gEek~------------------------------------------~I~Rpgg~Nspiws  181 (1081)
T KOG1538|consen  144 GQYLALGMFNGTISIRNKNGEEKV------------------------------------------KIERPGGSNSPIWS  181 (1081)
T ss_pred             CcEEEEeccCceEEeecCCCCcce------------------------------------------EEeCCCCCCCCceE
Confidence            999999999999988754332111                                          11122235788999


Q ss_pred             EEEcCC-----CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc
Q 010784          351 FSIMPS-----KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       351 v~~~~~-----~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~  423 (501)
                      ++|+|.     ...+++...+. +.+|.+....       +..-+.-.-...|+.+-++ .++..|+.|+.+++|- +.|
T Consensus       182 i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-------Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~G  253 (1081)
T KOG1538|consen  182 ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-------IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDG  253 (1081)
T ss_pred             EEecCCCCCCccceEEEEeccceeEEEEeccee-------ecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecC
Confidence            999996     24667777666 7777765321       1212222234568888888 7777777999999996 567


Q ss_pred             ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          424 MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       424 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      -.+.++     .....+|..++..|++++++.|+  .||+|-.|++.
T Consensus       254 vrLGTv-----g~~D~WIWtV~~~PNsQ~v~~GC--qDGTiACyNl~  293 (1081)
T KOG1538|consen  254 VRLGTV-----GEQDSWIWTVQAKPNSQYVVVGC--QDGTIACYNLI  293 (1081)
T ss_pred             eEEeec-----cccceeEEEEEEccCCceEEEEE--ccCeeehhhhH
Confidence            777777     44678999999999999999999  66999999843

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=1.1e-19  Score=156.43  Aligned_cols=218  Identities=21%  Similarity=0.276  Sum_probs=169.8

Q ss_pred             eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc-ccccceeeccCCCCceeEEEEeecCCeEEEEE
Q 010784          199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR-GQQALKATLYGHEKPIKLMSVAGHKSFLLVTI  277 (501)
Q Consensus       199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~  277 (501)
                      .-.+.+|+++|..+.|+|   .+.+.++|||.|.+|.||++..+... ....++..+.+|...|-.+.|+|...+.|+++
T Consensus        74 ~P~v~GHt~~vLDi~w~P---fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa  150 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCP---FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA  150 (472)
T ss_pred             CCCccCccccccccccCc---cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence            345679999999999995   56679999999999999998765432 22345778899999999999999889999999


Q ss_pred             eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784          278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK  357 (501)
Q Consensus       278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~  357 (501)
                      +.|.+|.+||+.+++.                                            +.++. |.+.|+++.|+.||
T Consensus       151 g~Dn~v~iWnv~tgea--------------------------------------------li~l~-hpd~i~S~sfn~dG  185 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEA--------------------------------------------LITLD-HPDMVYSMSFNRDG  185 (472)
T ss_pred             cCCceEEEEeccCCce--------------------------------------------eeecC-CCCeEEEEEeccCC
Confidence            9999999999998853                                            22333 89999999999999


Q ss_pred             cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccC-eEEEEecCC-eEEEEec---CCCcEEEEeCCCccccccccc
Q 010784          358 SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGS-VTQLHMDPY-KIVTGGR---DDLRINIWETDTGMLANSLLC  431 (501)
Q Consensus       358 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~-~~l~~gs---~dg~i~iwd~~~~~~~~~~~~  431 (501)
                      .++++.+.|+ |||||.++++.+      .+-.+|.+. -..+.|-.+ .++.+|-   .+..+-+||..+.+.-..+..
T Consensus       186 s~l~TtckDKkvRv~dpr~~~~v------~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e  259 (472)
T KOG0303|consen  186 SLLCTTCKDKKVRVIDPRRGTVV------SEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE  259 (472)
T ss_pred             ceeeeecccceeEEEcCCCCcEe------eecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE
Confidence            9999999999 999999998765      555667652 334456556 7777763   477899999877543322211


Q ss_pred             CCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          432 NYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       432 ~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                         -..++.|.---|.+|.+++..+|. .|+.|+.|.+++...
T Consensus       260 ---lDtSnGvl~PFyD~dt~ivYl~GK-GD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  260 ---LDTSNGVLLPFYDPDTSIVYLCGK-GDSSIRYFEITNEPP  298 (472)
T ss_pred             ---eccCCceEEeeecCCCCEEEEEec-CCcceEEEEecCCCc
Confidence               122445555567889999988887 799999999988774

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=3.2e-19  Score=147.42  Aligned_cols=254  Identities=19%  Similarity=0.196  Sum_probs=188.5

Q ss_pred             eEEEecCCCCceEEeeCC-cEEEeecCCe-------eeEEEEeccccc--------ccceecc-cCCcceeEEEeeccCc
Q 010784          104 VCFYSVAKPHDHILLDNN-DIFSTQGSSI-------QNIKIDNFLSES--------YYRATLS-DHKARITCMRLFPLHE  166 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~-~~~~~~g~~d-------~~i~vw~~~~~~--------~~~~~~~-~h~~~V~~~~~~~~~~  166 (501)
                      ..++.+...|-.++-+|- ..+++|...+       ..+.||.+....        +.+..|. .+-+.|.|+.|.|   
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P---  133 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP---  133 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC---
Confidence            345556666888887764 4444544331       457789886432        2233333 5667899999999   


Q ss_pred             CcccccCCCCcCcEEEEeeCCCceEEec--CCce-eeec-----cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEe
Q 010784          167 TSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC-QRCF-----KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS  238 (501)
Q Consensus       167 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~-~~~~-----~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd  238 (501)
                                ++..+++-. |..|.+|+  .+.. +..+     .+|+...++-+|+|  ..+++.+++. .|+++..||
T Consensus       134 ----------ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Wsp--HHdgnqv~tt-~d~tl~~~D  199 (370)
T KOG1007|consen  134 ----------NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSP--HHDGNQVATT-SDSTLQFWD  199 (370)
T ss_pred             ----------CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCC--CCccceEEEe-CCCcEEEEE
Confidence                      788888877 88999998  3322 2222     24677788889985  3467777775 478999999


Q ss_pred             ccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784          239 LSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM  318 (501)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (501)
                      +++..+     ....-..|...|..+.|+|+...+|++|+.||.|++||.+..+                          
T Consensus       200 ~RT~~~-----~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--------------------------  248 (370)
T KOG1007|consen  200 LRTMKK-----NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--------------------------  248 (370)
T ss_pred             ccchhh-----hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--------------------------
Confidence            998775     4445567999999999999888999999999999999998753                          


Q ss_pred             EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCC-----------------
Q 010784          319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDA-----------------  379 (501)
Q Consensus       319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~-----------------  379 (501)
                                       .++..+.+|...|.++.|+|. .+++++|+.|. |.+|...+-...                 
T Consensus       249 -----------------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~ds  311 (370)
T KOG1007|consen  249 -----------------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDS  311 (370)
T ss_pred             -----------------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhh
Confidence                             345677889999999999996 78889999888 999976542210                 


Q ss_pred             ------CCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCC
Q 010784          380 ------VKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       380 ------~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~  422 (501)
                            .....+.++..|...|++++|+..  -++|+-|.||++.|=.+..
T Consensus       312 eer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  312 EERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             HHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence                  011234567789999999999876  8889999999999877653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=4.3e-19  Score=152.82  Aligned_cols=207  Identities=23%  Similarity=0.301  Sum_probs=161.6

Q ss_pred             eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---------CCceeeeccCCCCceEEEEeeec
Q 010784          147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---------KGSCQRCFKGHNGPVSTLSDKLL  217 (501)
Q Consensus       147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---------~~~~~~~~~~h~~~v~~l~~s~~  217 (501)
                      -.+.||+++|..++|+|.            +.+.+||||.|.+|.||.         ....+..+.+|...|.-++|+| 
T Consensus        75 P~v~GHt~~vLDi~w~Pf------------nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHP-  141 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPF------------NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHP-  141 (472)
T ss_pred             CCccCccccccccccCcc------------CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecc-
Confidence            345799999999999997            789999999999999996         1234667889999999999995 


Q ss_pred             CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784          218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  297 (501)
                        ...+.|++++.|.+|.+||+.+++.      +.++. |...|.++.|+. ++.+|++.+.|..|+|||.++++.+.. 
T Consensus       142 --tA~NVLlsag~Dn~v~iWnv~tgea------li~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e-  210 (472)
T KOG0303|consen  142 --TAPNVLLSAGSDNTVSIWNVGTGEA------LITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSE-  210 (472)
T ss_pred             --cchhhHhhccCCceEEEEeccCCce------eeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeee-
Confidence              5567999999999999999999985      45555 999999999996 899999999999999999999865332 


Q ss_pred             ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC-cEEEEEEcCCCcEEEEEc---CCc-EEEEe
Q 010784          298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP-ILHSFSIMPSKSLICTGG---IGK-AMTWD  372 (501)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~---~d~-i~iwd  372 (501)
                                                                 -.+|.+ .-..+.|-.+|.++.+|-   .++ +-+||
T Consensus       211 -------------------------------------------~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwd  247 (472)
T KOG0303|consen  211 -------------------------------------------GVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWD  247 (472)
T ss_pred             -------------------------------------------cccccCCCcceeEEeccCceeeeccccccccceeccC
Confidence                                                       123432 234556777888666665   456 99999


Q ss_pred             cCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcc
Q 010784          373 IRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGM  424 (501)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~  424 (501)
                      ..+.+..   -...++.. .+.|.-=-++++  -+.++|-.|+.|+.|.+.+..
T Consensus       248 p~nl~eP---~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  248 PNNLEEP---IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cccccCc---ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            8876543   22334443 455666668888  555667789999999997654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=8.4e-20  Score=161.32  Aligned_cols=314  Identities=16%  Similarity=0.127  Sum_probs=227.9

Q ss_pred             eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      +...+..|.+-|+.|.|+..|..+++|+.|..+.+||+.++...+.-..||...|..-.|.|..           +...+
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s-----------~d~ti  202 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS-----------GDRTI  202 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC-----------CCcCc
Confidence            3445667778899999999999999999999999999999766666678999999999999954           56789


Q ss_pred             EEeeCCCceEEec---CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          182 VTSSCDHSIRLWW---KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       182 ~s~~~dg~i~vwd---~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      ++++.||.|++=.   ++.+.  ..+..|.++|.-++.-|   .....|.+++.|+.+.-+|++.+.....   ......
T Consensus       203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p---~sp~~f~S~geD~~v~~~Dlr~~~pa~~---~~cr~~  276 (559)
T KOG1334|consen  203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEP---DSPKPFLSCGEDAVVFHIDLRQDVPAEK---FVCREA  276 (559)
T ss_pred             eeccccCceeeeeeccccceecceecccccCccceeeecC---CCCCcccccccccceeeeeeccCCccce---eeeecc
Confidence            9999999999875   44333  44567999999999753   4456899999999999999988654211   112233


Q ss_pred             CCC---ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784          257 HEK---PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR  333 (501)
Q Consensus       257 ~~~---~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  333 (501)
                      +..   ....++..|.+...+++|+.|..+++||.+.-........+..+                              
T Consensus       277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f------------------------------  326 (559)
T KOG1334|consen  277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKF------------------------------  326 (559)
T ss_pred             CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhc------------------------------
Confidence            333   56788999888889999999999999998865332111100000                              


Q ss_pred             CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC--CCC----CCCc-ccccCccc--CeEEEEe-cC
Q 010784          334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD--AVK----PQPM-AELDGHVG--SVTQLHM-DP  402 (501)
Q Consensus       334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~--~~~----~~~~-~~~~~h~~--~v~~l~~-~~  402 (501)
                        .+........-.|++++++.++.-+.+...|- |+++.-..+.-  +..    ...+ ..+++|.+  .|..+-| -|
T Consensus       327 --~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP  404 (559)
T KOG1334|consen  327 --CPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP  404 (559)
T ss_pred             --CCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC
Confidence              00001112245689999997755454445444 99995433221  000    0112 23778854  5777755 56


Q ss_pred             C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          403 Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       403 ~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      . .++++||.-|.|.||+-.+++.++-+.     +....|+|+.-+|--..||+.|-  |.-|+||.-..
T Consensus       405 rsEyVvSGSDCGhIFiW~K~t~eii~~Me-----gDr~VVNCLEpHP~~PvLAsSGi--d~DVKIWTP~~  467 (559)
T KOG1334|consen  405 RSEYVVSGSDCGHIFIWDKKTGEIIRFME-----GDRHVVNCLEPHPHLPVLASSGI--DHDVKIWTPLT  467 (559)
T ss_pred             ccceEEecCccceEEEEecchhHHHHHhh-----cccceEeccCCCCCCchhhccCC--ccceeeecCCc
Confidence            7 999999999999999999999999884     33448999999999999999994  48999998533

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=1.8e-16  Score=153.73  Aligned_cols=344  Identities=25%  Similarity=0.410  Sum_probs=244.9

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc-ceeEEEe-eccCcCcccccCCCCcCc-EE
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA-RITCMRL-FPLHETSLFRSEPQRTEN-VL  181 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~-~V~~~~~-~~~~~~~~~~~~~~~~~~-~l  181 (501)
                      ....+...+.++.+++.+..++.++.++.+.+|+...+......+.++.. .+..+.+ .+             ++. .+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  126 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP-------------DGNSIL  126 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC-------------CcceEE
Confidence            45566777999999999999999999999999999875326666766443 7777777 55             555 55


Q ss_pred             EEeeC-CCceEEec-C--CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeeccC
Q 010784          182 VTSSC-DHSIRLWW-K--GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       182 ~s~~~-dg~i~vwd-~--~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      +..+. |+.+.+|+ .  ......+..|...|..+.|+    +++..+++++. |+.+++|++....      .+..+.+
T Consensus       127 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  196 (466)
T COG2319         127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS----PDGKLLASGSSLDGTIKLWDLRTGK------PLSTLAG  196 (466)
T ss_pred             eccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEEC----CCCCEEEecCCCCCceEEEEcCCCc------eEEeecc
Confidence            55444 99999999 4  47788889999999999997    78888888885 9999999999854      4777888


Q ss_pred             CCCceeEEEEeecCCe-EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe-EEEEe--CCcEEEEEc
Q 010784          257 HEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIAS--GSSVVTIDL  332 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i~~~d~  332 (501)
                      |...|.++++.| ++. .+++++.|+.|++||...+.....    ....+...... .+.++. .++..  .+.+++|++
T Consensus       197 ~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~  270 (466)
T COG2319         197 HTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRS----TLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDL  270 (466)
T ss_pred             CCCceEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEee----ecCCCCcceeE-eECCCCCEEEEecCCCcEEEeee
Confidence            999999999996 554 566669999999998885544331    00011111111 333333 22222  348999999


Q ss_pred             CCCce-EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc--cCcccCeEEEEecCC--eEE
Q 010784          333 RTMQK-VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL--DGHVGSVTQLHMDPY--KIV  406 (501)
Q Consensus       333 ~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~--~~l  406 (501)
                      +.... ...+..|...+.++.|.|++..+++++.++ +.+||.......      ...  ..|...+..+.+.++  .++
T Consensus       271 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  344 (466)
T COG2319         271 RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL------SSLTLKGHEGPVSSLSFSPDGSLLV  344 (466)
T ss_pred             cCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE------EEeeecccCCceEEEEECCCCCEEE
Confidence            87775 444467889999999999888888887778 999988876543      333  367777889988433  455


Q ss_pred             EEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE-eecCCCceEEEeeccCCcc-----------
Q 010784          407 TGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT-ASYGEPGLLQFRDFSNATC-----------  474 (501)
Q Consensus       407 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s-~~~d~~g~i~~w~~~~~~~-----------  474 (501)
                      .++..|+.+.+|+...........      ....+..+.+++ ...++. +.  .++.+.+|+......           
T Consensus       345 ~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (466)
T COG2319         345 SGGSDDGTIRLWDLRTGKPLKTLE------GHSNVLSVSFSP-DGRVVSSGS--TDGTVRLWDLSTGSLLRNLDGHTSRV  415 (466)
T ss_pred             EeecCCCcEEeeecCCCceeEEec------CCceEEEEEECC-CCCEEEEec--CCCceEEEecccCeeeeeccCCCCcE
Confidence            554688999999998877222221      112278888888 543443 44  668899998654332           


Q ss_pred             ----------ceeecCCCCceeeecccC
Q 010784          475 ----------PVLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       475 ----------~~~s~~~d~~~~~w~~~~  492 (501)
                                .+++++.++.+++|+...
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         416 TSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EEEEECCCCcEEEEecCCCcEEEEeccC
Confidence                      233456677777777654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=1.9e-18  Score=154.51  Aligned_cols=265  Identities=14%  Similarity=0.112  Sum_probs=192.7

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      +.|+.+..+...+.+++.+..+.-|++.+.  ....+.-..+-|....+ +.+    ...........|+.++.||.+.+
T Consensus        17 vc~v~w~~~eei~~~~dDh~~~~~~~~~~~--s~~~~~~p~df~pt~~h-~~~----rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   17 VCCVDWSSNEEIYFVSDDHQIFKWSDVSRD--SVEVAKLPDDFVPTDMH-LGG----RSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             EEeecccccceEEEeccCceEEEeecccch--hhhhhhCCcccCCcccc-ccc----cccCCCCCcceEEEEcCCceEEE
Confidence            458888888888887777777777777643  22222222232322222 100    01111124568888999999999


Q ss_pred             ec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC
Q 010784          193 WW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS  271 (501)
Q Consensus       193 wd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  271 (501)
                      -+ .++..+....|.+.+.|-.|+    ++|.-|+++++||.|++|.-...       +..++.....+|.|++|.|+..
T Consensus        90 l~k~~rVE~sv~AH~~A~~~gRW~----~dGtgLlt~GEDG~iKiWSrsGM-------LRStl~Q~~~~v~c~~W~p~S~  158 (737)
T KOG1524|consen   90 LNKSARVERSISAHAAAISSGRWS----PDGAGLLTAGEDGVIKIWSRSGM-------LRSTVVQNEESIRCARWAPNSN  158 (737)
T ss_pred             ecccchhhhhhhhhhhhhhhcccC----CCCceeeeecCCceEEEEeccch-------HHHHHhhcCceeEEEEECCCCC
Confidence            99 888888899999999999996    89999999999999999987654       3455666778999999999766


Q ss_pred             eEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEE
Q 010784          272 FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSF  351 (501)
Q Consensus       272 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v  351 (501)
                      +.+++.+.  .+.+=-+...                                            ..+...+.|.+-|.++
T Consensus       159 ~vl~c~g~--h~~IKpL~~n--------------------------------------------~k~i~WkAHDGiiL~~  192 (737)
T KOG1524|consen  159 SIVFCQGG--HISIKPLAAN--------------------------------------------SKIIRWRAHDGLVLSL  192 (737)
T ss_pred             ceEEecCC--eEEEeecccc--------------------------------------------cceeEEeccCcEEEEe
Confidence            66666553  3433222211                                            2334667899999999


Q ss_pred             EEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784          352 SIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       352 ~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                      .|++..+++++|++|. .++||...       .++..-..|..+|++++|+|++.++.+|. ++++            |.
T Consensus       193 ~W~~~s~lI~sgGED~kfKvWD~~G-------~~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R------------~~  252 (737)
T KOG1524|consen  193 SWSTQSNIIASGGEDFRFKIWDAQG-------ANLFTSAAEEYAITSVAFNPEKDYLLWSY-NTAR------------FS  252 (737)
T ss_pred             ecCccccceeecCCceeEEeecccC-------cccccCChhccceeeeeeccccceeeeee-eeee------------ec
Confidence            9999999999999999 99999873       34577788999999999999966666644 3444            21


Q ss_pred             cCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784          431 CNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR  467 (501)
Q Consensus       431 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w  467 (501)
                          ....+.|..++||+||..++.|+  ..|.+.+-
T Consensus       253 ----~p~~GSifnlsWS~DGTQ~a~gt--~~G~v~~A  283 (737)
T KOG1524|consen  253 ----SPRVGSIFNLSWSADGTQATCGT--STGQLIVA  283 (737)
T ss_pred             ----CCCccceEEEEEcCCCceeeccc--cCceEEEe
Confidence                22367789999999999999998  55776553

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.1e-17  Score=156.84  Aligned_cols=330  Identities=13%  Similarity=0.099  Sum_probs=221.7

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEeccc---ccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS---ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~---~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      |..+++|.+++|++.++|+|..||.|.+|.--.   .....+.+.-|.+.|++++|++             +|.+|+||+
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~-------------~G~~LlSGG  270 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS-------------DGAYLLSGG  270 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec-------------CCceEeecc
Confidence            444589999999999999999999999996432   2345567788999999999999             899999999


Q ss_pred             CCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc--------
Q 010784          186 CDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY--------  255 (501)
Q Consensus       186 ~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--------  255 (501)
                      ..|.+.+|.  +++ .+-+..-.++|..+.++    +++++.+....|..|.+-...+.....   .+..+.        
T Consensus       271 ~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS----~ds~~~sl~~~DNqI~li~~~dl~~k~---tIsgi~~~~~~~k~  342 (792)
T KOG1963|consen  271 REGVLVLWQLETGK-KQFLPRLGSPILHIVVS----PDSDLYSLVLEDNQIHLIKASDLEIKS---TISGIKPPTPSTKT  342 (792)
T ss_pred             cceEEEEEeecCCC-cccccccCCeeEEEEEc----CCCCeEEEEecCceEEEEeccchhhhh---hccCccCCCccccc
Confidence            999999997  444 55667788999999998    889999999999999999876544210   111111        


Q ss_pred             CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC------ceeeecCCCeEEEEeCC----
Q 010784          256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV------PVDMKCHESMLYIASGS----  325 (501)
Q Consensus       256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----  325 (501)
                      ...+-.+.++++| ..+.++-.+..|.|.+||+-+.+.+............+.      +..+...-.+.++++..    
T Consensus       343 ~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d  421 (792)
T KOG1963|consen  343 RPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARID  421 (792)
T ss_pred             cccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeeh
Confidence            1234467788887 566788888999999999998877655544433322222      22233333355555431    


Q ss_pred             ---------cEEEEEcCCCceEe-----eeccCCCcEEEEEEcC-C-CcEEEEEcCCc-EEEEecCCCCCCCCC----CC
Q 010784          326 ---------SVVTIDLRTMQKVM-----TPAICKPILHSFSIMP-S-KSLICTGGIGK-AMTWDIRRSQDAVKP----QP  384 (501)
Q Consensus       326 ---------~i~~~d~~~~~~~~-----~~~~~~~~v~~v~~~~-~-~~~l~~~~~d~-i~iwd~~~~~~~~~~----~~  384 (501)
                               .+++|-......-.     ....|...+...++.+ . ....++++.|+ +++|-+...+...+.    .+
T Consensus       422 ~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c  501 (792)
T KOG1963|consen  422 KFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTC  501 (792)
T ss_pred             hhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEE
Confidence                     47778665443322     2235666655555544 3 33788888888 999998554433211    11


Q ss_pred             cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc-ccccccccCCCCCCCcceeeeEee----ccccEEEEeec
Q 010784          385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG-MLANSLLCNYPEEADISTGCSAMA----VSGCRIVTASY  458 (501)
Q Consensus       385 ~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~l~s~~~  458 (501)
                      ...-..|..++++++|+.+ .+++.+ .|++|.+||..+. ++..+. +.    ....+..+.+.    .++.....   
T Consensus       502 ~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~---  572 (792)
T KOG1963|consen  502 KAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTE-GS----RNWPIAELLFTAQTQNDGALVHA---  572 (792)
T ss_pred             eeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccc-cc----cccchHhHhhhcccccccceeec---
Confidence            1222237889999999999 888875 8999999999984 333333 11    12233333333    23333332   


Q ss_pred             CCCceEEEeecc
Q 010784          459 GEPGLLQFRDFS  470 (501)
Q Consensus       459 d~~g~i~~w~~~  470 (501)
                       ....+.+|++-
T Consensus       573 -~~~~l~~WNll  583 (792)
T KOG1963|consen  573 -TQQRLSVWNLL  583 (792)
T ss_pred             -cCceEehHhhh
Confidence             34788888854

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=7e-18  Score=145.27  Aligned_cols=294  Identities=11%  Similarity=0.084  Sum_probs=201.9

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc-----cccceecc-cCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE-----SYYRATLS-DHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~-----~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      ..|..-|++|.|+.++.+||+|+.|..+++|+++..     .+++.... .|...|.|++|..             .+.+
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-------------~N~~  119 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-------------ENRF  119 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-------------CCee
Confidence            345555999999999999999999999999998632     13333332 3558899999987             6789


Q ss_pred             EEEeeCCCceEEec--CCceeeecc--CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          181 LVTSSCDHSIRLWW--KGSCQRCFK--GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       181 l~s~~~dg~i~vwd--~~~~~~~~~--~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      +.+|..+++|.+-|  +.+.+..+.  ...+.|..|..+    |..+.|++.+.+|.|.+||.+.......   ...+..
T Consensus       120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~----P~DN~~~~~t~~~~V~~~D~Rd~~~~~~---~~~~AN  192 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQH----PTDNTLIVVTRAKLVSFIDNRDRQNPIS---LVLPAN  192 (609)
T ss_pred             EecCCCcceeEeeecccceeeeeecccCcccceeecccC----CCCceEEEEecCceEEEEeccCCCCCCc---eeeecC
Confidence            99999999999999  444454443  234589999987    6688999999999999999987653211   122223


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc-e-ecccceecCCCceeeecCCCeEEEE---eCCcEEEEE
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS-S-CCVGMTSVPGVPVDMKCHESMLYIA---SGSSVVTID  331 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d  331 (501)
                      .......+.|+|....+|++.+..+-+.+||++..+.... . ...........-+...+++++.-+.   .+..-.+||
T Consensus       193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D  272 (609)
T KOG4227|consen  193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD  272 (609)
T ss_pred             CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence            4456678899998899999999999999999987543110 0 0011111111224444554433222   122455677


Q ss_pred             cCCCceEeeeccCC-------CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC-----------------CCCCCcc
Q 010784          332 LRTMQKVMTPAICK-------PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA-----------------VKPQPMA  386 (501)
Q Consensus       332 ~~~~~~~~~~~~~~-------~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~-----------------~~~~~~~  386 (501)
                      +-+..+......|.       ..+.+++|--|. -+++|+++- |++|.+......                 .-...+.
T Consensus       273 ~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~  351 (609)
T KOG4227|consen  273 FISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT  351 (609)
T ss_pred             eecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence            76654432222222       235677776544 499999988 999998642211                 1123456


Q ss_pred             cccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784          387 ELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       387 ~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~  421 (501)
                      .+++|...++.+.|+|. .++++.+-...++||.-.
T Consensus       352 VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  352 VLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             EEecccccccceeecCCcceEeccchhhheeccccc
Confidence            78899999999999999 888887889999999753

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=5.4e-18  Score=140.32  Aligned_cols=246  Identities=20%  Similarity=0.272  Sum_probs=180.4

Q ss_pred             EecCCCCceEEeeCCc-----EEEeecCCeeeEEEEecccc---cccceec-----ccCCcceeEEEeeccCcCcccccC
Q 010784          107 YSVAKPHDHILLDNND-----IFSTQGSSIQNIKIDNFLSE---SYYRATL-----SDHKARITCMRLFPLHETSLFRSE  173 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~-----~~~~~g~~d~~i~vw~~~~~---~~~~~~~-----~~h~~~V~~~~~~~~~~~~~~~~~  173 (501)
                      +.++-|++.+.|.|+.     .+|||.+  -.+++|.+...   .++...+     ..+.+++++..|+..         
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~---------  161 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV---------  161 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC---------
Confidence            4567789999999876     3566554  47888987632   1222222     346678999999875         


Q ss_pred             CCCcCcEEEEeeCCCceEEec--CC---ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784          174 PQRTENVLVTSSCDHSIRLWW--KG---SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       174 ~~~~~~~l~s~~~dg~i~vwd--~~---~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  248 (501)
                         +.+++.+++-|.+..|||  .+   .....+-+|..+|..++|.   ...-+.|++.+.||.||+||++..+.   .
T Consensus       162 ---dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~---~~s~~~FASvgaDGSvRmFDLR~leH---S  232 (364)
T KOG0290|consen  162 ---DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFL---KGSRDVFASVGADGSVRMFDLRSLEH---S  232 (364)
T ss_pred             ---CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEec---cCccceEEEecCCCcEEEEEeccccc---c
Confidence               789999999999999999  33   2344567899999999997   34467899999999999999998653   0


Q ss_pred             cceeeccCCCCceeEEEEeecCCeEEEEEeCC-CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcE
Q 010784          249 ALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV  327 (501)
Q Consensus       249 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  327 (501)
                      ..+..-.....+...++|++.+.+++++-..| ..|.+.|++...                                   
T Consensus       233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-----------------------------------  277 (364)
T KOG0290|consen  233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-----------------------------------  277 (364)
T ss_pred             eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-----------------------------------
Confidence            11111122256778899998888888886654 568888887652                                   


Q ss_pred             EEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--
Q 010784          328 VTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--  403 (501)
Q Consensus       328 ~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--  403 (501)
                              ..+..+++|.+.|+.++|.|. ...|+++++|. +.+||+...-......++.... ..+.|+.+.|++.  
T Consensus       278 --------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~  348 (364)
T KOG0290|consen  278 --------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQP  348 (364)
T ss_pred             --------cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCC
Confidence                    345678899999999999996 78999999999 9999998754321134444444 4678999999987  


Q ss_pred             eEEEEecCCCcEEE
Q 010784          404 KIVTGGRDDLRINI  417 (501)
Q Consensus       404 ~~l~~gs~dg~i~i  417 (501)
                      ..++.+ .++.+.+
T Consensus       349 Dwiai~-~~kklei  361 (364)
T KOG0290|consen  349 DWIAIC-FGKKLEI  361 (364)
T ss_pred             CEEEEE-ecCeeeE
Confidence            777776 5555554

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.1e-17  Score=141.63  Aligned_cols=196  Identities=17%  Similarity=0.208  Sum_probs=149.6

Q ss_pred             CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec-CCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      ..++++..+|.|++||..+++      .+..++++...+..++|... .+..+.+|+.||+|++||+++...........
T Consensus        41 ~~vav~lSngsv~lyd~~tg~------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~  114 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ  114 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC
Confidence            578888899999999999976      58889999999999999854 56789999999999999999876543322211


Q ss_pred             ceecCCCceeeecCCCeEEEEeCC-------cEEEEEcCCCce-Ee-eeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEE
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGS-------SVVTIDLRTMQK-VM-TPAICKPILHSFSIMPS-KSLICTGGIGK-AMT  370 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~d~~~~~~-~~-~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~i  370 (501)
                        .......+++.+-+..++++|.       .+.+||.|..+. +. -...|.+.|+++.|+|. .++|++||.|+ |.+
T Consensus       115 --~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl  192 (376)
T KOG1188|consen  115 --QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL  192 (376)
T ss_pred             --CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe
Confidence              1123334555544445555542       699999999877 44 34579999999999995 78999999999 999


Q ss_pred             EecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCccccccc
Q 010784          371 WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSL  429 (501)
Q Consensus       371 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~  429 (501)
                      ||+......   ..+...-.|...|.++.|...  +-+.+-+..++..+|+++.+.+...+
T Consensus       193 fD~~~d~Ee---DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  193 FDTKKDNEE---DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             eecCCCcch---hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            999876432   233344456788999999877  45666679999999999988766555

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=4.8e-18  Score=152.45  Aligned_cols=226  Identities=15%  Similarity=0.229  Sum_probs=158.6

Q ss_pred             eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      ....+.+|.+=|+|+.|+.+|.+|++|+.|-.+.|||.-. .++++.+ .||.+.|.++.|.|..           ++.+
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~TgHtaNIFsvKFvP~t-----------nnri  109 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSISTGHTANIFSVKFVPYT-----------NNRI  109 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchh-cceeeeeecccccceeEEeeeccC-----------CCeE
Confidence            3445667778899999999999999999999999999886 3555544 7999999999999954           6789


Q ss_pred             EEEeeCCCceEEecCC------------ceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCc-cc
Q 010784          181 LVTSSCDHSIRLWWKG------------SCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGK-RG  246 (501)
Q Consensus       181 l~s~~~dg~i~vwd~~------------~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~-~~  246 (501)
                      ++||..|..|+++|..            .....+..|...|..++-.    +++ +.+.++++||+|+-+|++.... .+
T Consensus       110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~----p~~PhtfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATA----PNGPHTFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecC----CCCCceEEEecCCcceeeecccCCccCCc
Confidence            9999999999999821            1234566799999988875    455 7899999999999999987432 00


Q ss_pred             cccc---eeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc-c----ee-------cccce------ec
Q 010784          247 QQAL---KATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR-S----SC-------CVGMT------SV  305 (501)
Q Consensus       247 ~~~~---~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~----~~-------~~~~~------~~  305 (501)
                      ...+   ...+...--...++.++|....+|+.|+.|-..++||.+...+.. .    ..       ++.-+      ..
T Consensus       186 ~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~  265 (758)
T KOG1310|consen  186 DEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNS  265 (758)
T ss_pred             cccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCc
Confidence            0001   111122223567899999999999999999999999954321110 0    00       11111      11


Q ss_pred             CC----C---ceeeecCCC--eEEEEeCC-cEEEEEcCCCceEeeecc
Q 010784          306 PG----V---PVDMKCHES--MLYIASGS-SVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       306 ~~----~---~~~~~~~~~--~~~~~~~~-~i~~~d~~~~~~~~~~~~  343 (501)
                      .+    .   ..-+.++|+  .+++.-++ .|+++|+..++....+..
T Consensus       266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~  313 (758)
T KOG1310|consen  266 QGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFL  313 (758)
T ss_pred             ccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence            11    1   122345555  55555444 899999998888766553

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=6e-17  Score=153.73  Aligned_cols=328  Identities=16%  Similarity=0.158  Sum_probs=222.2

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEeccccccc---ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYY---RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS  189 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~---~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  189 (501)
                      ..+|..++.|.+.+..-. ..+.+|+..++.+.   ...-..|.-.++|.+++|             +++++++|..||.
T Consensus       163 ~~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-------------n~~~~Aa~d~dGr  228 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-------------NERYLAAGDSDGR  228 (792)
T ss_pred             CccEEEcCCceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEecc-------------ccceEEEeccCCc
Confidence            467777777777655543 44566666642211   111235777799999999             8999999999999


Q ss_pred             eEEec-CC-----ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          190 IRLWW-KG-----SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       190 i~vwd-~~-----~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      |.+|. .+     .....+.=|..+|.+++|+    .+|.+|+||+..|.+.+|.+.++++       +.+..-.++|..
T Consensus       229 I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS----~~G~~LlSGG~E~VLv~Wq~~T~~k-------qfLPRLgs~I~~  297 (792)
T KOG1963|consen  229 ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS----SDGAYLLSGGREGVLVLWQLETGKK-------QFLPRLGSPILH  297 (792)
T ss_pred             EEEEeccccccccccceEEEecccccceeEEe----cCCceEeecccceEEEEEeecCCCc-------ccccccCCeeEE
Confidence            99996 32     2235566789999999998    8999999999999999999999863       555666789999


Q ss_pred             EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce------ecCCCceeeecCCCe-E--EEEeCCcEEEEEcCC
Q 010784          264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT------SVPGVPVDMKCHESM-L--YIASGSSVVTIDLRT  334 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~--~~~~~~~i~~~d~~~  334 (501)
                      +.++| ++...+....|..|.+....+........-....      ...+....+..++.. .  +.+..+.+.+||+.+
T Consensus       298 i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  298 IVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT  376 (792)
T ss_pred             EEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence            99997 7778888888999999987655433222111111      123334444555522 2  222335899999988


Q ss_pred             CceEeeecc-----C------CCcEEEEEEcCCCcEEEEEc--------CC-c--EEEEecCCCCCCCCCCCc-ccccCc
Q 010784          335 MQKVMTPAI-----C------KPILHSFSIMPSKSLICTGG--------IG-K--AMTWDIRRSQDAVKPQPM-AELDGH  391 (501)
Q Consensus       335 ~~~~~~~~~-----~------~~~v~~v~~~~~~~~l~~~~--------~d-~--i~iwd~~~~~~~~~~~~~-~~~~~h  391 (501)
                      .+.+..+..     +      .-.+++++.+-.|.+++|.-        .| .  +++|-.......  .... .....|
T Consensus       377 d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt--~~L~T~I~~PH  454 (792)
T KOG1963|consen  377 DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT--FILNTKINNPH  454 (792)
T ss_pred             cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce--eEEEEEEecCC
Confidence            877765542     1      22467777787899999874        22 2  888977654432  1111 122467


Q ss_pred             ccCeEEEEecCC---eEEEEecCCCcEEEEeCCCcccccccc----c-CCCCCCCcceeeeEeeccccEEEEeecCCCce
Q 010784          392 VGSVTQLHMDPY---KIVTGGRDDLRINIWETDTGMLANSLL----C-NYPEEADISTGCSAMAVSGCRIVTASYGEPGL  463 (501)
Q Consensus       392 ~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~~~~~~~~~~----~-~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~  463 (501)
                      ...+...++.+.   ...++++.||.++||-+...+.+..-.    + .....|..+++.++|+.||..|+.+-   ++.
T Consensus       455 ~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~---~~~  531 (792)
T KOG1963|consen  455 GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF---DDT  531 (792)
T ss_pred             CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec---CCE
Confidence            766666555443   367777899999999984433222110    0 00124678899999999998888773   479


Q ss_pred             EEEeeccC
Q 010784          464 LQFRDFSN  471 (501)
Q Consensus       464 i~~w~~~~  471 (501)
                      |.+||..+
T Consensus       532 Itiwd~~~  539 (792)
T KOG1963|consen  532 ITIWDYDT  539 (792)
T ss_pred             EEEecCCC
Confidence            99999877

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=6e-19  Score=158.86  Aligned_cols=250  Identities=14%  Similarity=0.115  Sum_probs=177.0

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccc-------ccccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS-------ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~-------~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      ....+-..|..++|.+....+++++.++++++|+++.       ..+++.+|.+|.++|.|+++.+             +
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-------------n  355 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-------------N  355 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-------------C
Confidence            5566667799999999999999999999999999832       1467889999999999999998             8


Q ss_pred             CcEEEEeeCCCceEEec------------CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc
Q 010784          178 ENVLVTSSCDHSIRLWW------------KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR  245 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd------------~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  245 (501)
                      +..+.+|+.||+|+.|+            .......+.||++.|..+++|    .....|++++.||+++.|+...... 
T Consensus       356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s----~~~~~Llscs~DgTvr~w~~~~~~~-  430 (577)
T KOG0642|consen  356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS----STKDRLLSCSSDGTVRLWEPTEESP-  430 (577)
T ss_pred             ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec----ccccceeeecCCceEEeeccCCcCc-
Confidence            99999999999999994            112345678999999999998    6777899999999999999876542 


Q ss_pred             ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecC-----CCceeeecCCCeEE
Q 010784          246 GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVP-----GVPVDMKCHESMLY  320 (501)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  320 (501)
                          +........+.-..+.+......+.++...-+.--++++.....   .........+     ..+..+..+++.-+
T Consensus       431 ----~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~---~~~~~s~~~~~~~~~~~in~vVs~~~~~~  503 (577)
T KOG0642|consen  431 ----CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD---LLIFESSASPGPRRYPQINKVVSHPTADI  503 (577)
T ss_pred             ----cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh---eeeccccCCCcccccCccceEEecCCCCe
Confidence                11211212222345555432222333333333333333333322   2221111111     11222223333222


Q ss_pred             EEe---CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          321 IAS---GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       321 ~~~---~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                      ..+   ...|+++|..++..+.....|...++++++.|+|-+|.+++.|+ +++|.+....+.
T Consensus       504 ~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  504 TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             eEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence            222   23899999999999999999999999999999999999999999 999999875543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.80  E-value=1.5e-17  Score=162.69  Aligned_cols=271  Identities=14%  Similarity=0.202  Sum_probs=182.5

Q ss_pred             EecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCc---------eeeeccCCCC
Q 010784          137 DNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGS---------CQRCFKGHNG  207 (501)
Q Consensus       137 w~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~h~~  207 (501)
                      |+.+  +..+..+..|...|..++.++.            .+.+|+|||.||+|++||..+         ...++.--..
T Consensus      1034 W~p~--G~lVAhL~Ehs~~v~k~a~s~~------------~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~s 1099 (1431)
T KOG1240|consen 1034 WNPR--GILVAHLHEHSSAVIKLAVSSE------------HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGS 1099 (1431)
T ss_pred             CCcc--ceEeehhhhccccccceeecCC------------CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCC
Confidence            5555  5788889999999999999873            569999999999999998211         2223333466


Q ss_pred             ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc-ccccceeeccCC-CCc-eeEEEEeecCCe-EEEEEeCCCeE
Q 010784          208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR-GQQALKATLYGH-EKP-IKLMSVAGHKSF-LLVTISKDSKV  283 (501)
Q Consensus       208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~-~~~-v~~l~~~~~~~~-~l~s~s~dg~v  283 (501)
                      .+.++...    ..++.+|.|+.||.|++.+++..... ...........+ .+. |..-++...... .++.+..-+.|
T Consensus      1100 r~~~vt~~----~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1100 RVEKVTMC----GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred             ceEEEEec----cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccce
Confidence            78888876    78899999999999999999873210 000111111222 222 233334333334 67777788888


Q ss_pred             EEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784          284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG  363 (501)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  363 (501)
                      ..||++........                                          ......+.|++++.+|.+++++.|
T Consensus      1176 v~~D~r~~~~~w~l------------------------------------------k~~~~hG~vTSi~idp~~~WlviG 1213 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRL------------------------------------------KNQLRHGLVTSIVIDPWCNWLVIG 1213 (1431)
T ss_pred             EEecchhhhhHHhh------------------------------------------hcCccccceeEEEecCCceEEEEe
Confidence            88888765322111                                          112236789999999999999999


Q ss_pred             cCCc-EEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-----eEEEEec-CCCcEEEEeCCCcccccccccCC--
Q 010784          364 GIGK-AMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-----KIVTGGR-DDLRINIWETDTGMLANSLLCNY--  433 (501)
Q Consensus       364 ~~d~-i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-----~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~--  433 (501)
                      +..| +.+||+|-...+      ... .++..+++.+..+|.     ..+++|+ ..+.|.+|++.+|.+..++....  
T Consensus      1214 ts~G~l~lWDLRF~~~i------~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~ 1287 (1431)
T KOG1240|consen 1214 TSRGQLVLWDLRFRVPI------LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGA 1287 (1431)
T ss_pred             cCCceEEEEEeecCcee------ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCC
Confidence            9988 999999986543      332 234577888877764     3455555 78899999999998777664431  


Q ss_pred             -------CC-----CCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784          434 -------PE-----EADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       434 -------~~-----~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                             +.     .+.-....+++..-+.++.+|+  .|..|+.||...+...
T Consensus      1288 p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltgg--sd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1288 PILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGG--SDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             cchhhhcccccCCCCCcccceeeecccCCceeeecC--CccceeeccCCCcccc
Confidence                   00     1122233344555567888888  5699999997766554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=1.5e-17  Score=139.76  Aligned_cols=231  Identities=14%  Similarity=0.166  Sum_probs=165.8

Q ss_pred             eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc------ccceeeccC-CCCceeEEEEee------cCCeEEE
Q 010784          209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ------QALKATLYG-HEKPIKLMSVAG------HKSFLLV  275 (501)
Q Consensus       209 v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~------~~~~~~~~~-~~~~v~~l~~~~------~~~~~l~  275 (501)
                      .....|+    |+|..|++-+.|..+++|++....-...      ......++- ....|..-+|-+      .+.++++
T Consensus        52 ~kgckWS----PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   52 LKGCKWS----PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             hccceeC----CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence            3456887    8999999999999999999864221000      000111111 123344444432      1456777


Q ss_pred             EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC---cEEEEE
Q 010784          276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP---ILHSFS  352 (501)
Q Consensus       276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~v~~v~  352 (501)
                      +.+.+.-|++||.-+++...+..                                          .-.|..   ...+++
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~------------------------------------------~ydh~de~taAhsL~  165 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYR------------------------------------------AYDHQDEYTAAHSLQ  165 (406)
T ss_pred             eccccCceeeeeccccccccchh------------------------------------------hhhhHHhhhhheeEE
Confidence            77888888888887775432211                                          111222   346899


Q ss_pred             EcCCCcEEEEEcCCcEEEEec-CCCCCCCCCCCcccc-----cCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcc
Q 010784          353 IMPSKSLICTGGIGKAMTWDI-RRSQDAVKPQPMAEL-----DGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGM  424 (501)
Q Consensus       353 ~~~~~~~l~~~~~d~i~iwd~-~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~  424 (501)
                      |+|||..|++|....|+++|+ +.+...    ++...     .+..+-+.+++|+|.  +.++.|+.-.++-|+.-..+.
T Consensus       166 Fs~DGeqlfaGykrcirvFdt~RpGr~c----~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~  241 (406)
T KOG2919|consen  166 FSPDGEQLFAGYKRCIRVFDTSRPGRDC----PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR  241 (406)
T ss_pred             ecCCCCeEeecccceEEEeeccCCCCCC----cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC
Confidence            999999999998888999999 554432    11221     233677889999998  799999999999999998899


Q ss_pred             cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc-------------------------CCccceeec
Q 010784          425 LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS-------------------------NATCPVLKH  479 (501)
Q Consensus       425 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~-------------------------~~~~~~~s~  479 (501)
                      ++..+     .+|.+.|+.++|.++|+.|++|.. .+-.|..||+.                         +.++.+++|
T Consensus       242 pl~ll-----ggh~gGvThL~~~edGn~lfsGaR-k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG  315 (406)
T KOG2919|consen  242 PLQLL-----GGHGGGVTHLQWCEDGNKLFSGAR-KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASG  315 (406)
T ss_pred             ceeee-----cccCCCeeeEEeccCcCeeccccc-CCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeecc
Confidence            99988     688999999999999999999987 67788888843                         455668899


Q ss_pred             CCCCceeeecccCCCC
Q 010784          480 EVQNDSKFWGPQCYSD  495 (501)
Q Consensus       480 ~~d~~~~~w~~~~~~~  495 (501)
                      +.||.|++|+++..-+
T Consensus       316 ~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  316 DTDGSVRVWDLKDLGN  331 (406)
T ss_pred             CCCccEEEEecCCCCC
Confidence            9999999999987544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.78  E-value=2.4e-15  Score=145.71  Aligned_cols=316  Identities=25%  Similarity=0.403  Sum_probs=232.1

Q ss_pred             CCceEEe-eCCcE-EEeec-CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-C
Q 010784          112 PHDHILL-DNNDI-FSTQG-SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-D  187 (501)
Q Consensus       112 ~i~~~~~-~~~~~-~~~~g-~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d  187 (501)
                      .+..+.+ ++++. +++.. ..++.+.+|+..........+..|...|.+++|+|             ++..+++++. |
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~~~~~~~~~  177 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-------------DGKLLASGSSLD  177 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-------------CCCEEEecCCCC
Confidence            5666666 77776 55544 44999999999863377788899999999999999             6778888885 9


Q ss_pred             CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCC-EEEEeeCCCcEEEEeccCCCcccccccee-eccCCCCceeE
Q 010784          188 HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLSSSGKRGQQALKA-TLYGHEKPIKL  263 (501)
Q Consensus       188 g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~  263 (501)
                      +.+++|+  .+..+..+.+|...|.+++|+    +++. .+++++.|+.|++||...+.      ... .+.+|...+ .
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~~~-~  246 (466)
T COG2319         178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFS----PDGGLLIASGSSDGTIRLWDLSTGK------LLRSTLSGHSDSV-V  246 (466)
T ss_pred             CceEEEEcCCCceEEeeccCCCceEEEEEc----CCcceEEEEecCCCcEEEEECCCCc------EEeeecCCCCcce-e
Confidence            9999999  457888888899999999997    6776 56666999999999888554      344 577888775 4


Q ss_pred             EEEeecCCeEEEEEeCCCeEEEEECCCCcc-ccceecccceecCCCceeeecCCCe-EEEEeC--CcEEEEEcCCCceEe
Q 010784          264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSA-VRSSCCVGMTSVPGVPVDMKCHESM-LYIASG--SSVVTIDLRTMQKVM  339 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~~~d~~~~~~~~  339 (501)
                      ..|++ ++..+++++.|+.+++|+++.... ....     ..+...+..+.+.+.. .+.+.+  +.+.+||.++.....
T Consensus       247 ~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  320 (466)
T COG2319         247 SSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTL-----SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS  320 (466)
T ss_pred             EeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEE-----ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence            47887 457888999999999999987754 1111     2224555556666532 233222  358999999888776


Q ss_pred             eec--cCCCcEEEEEEcCCCcEEEEE-cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCc
Q 010784          340 TPA--ICKPILHSFSIMPSKSLICTG-GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLR  414 (501)
Q Consensus       340 ~~~--~~~~~v~~v~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~  414 (501)
                      ...  .|...+..+.+.+++..++.+ ..++ +.+|+.......      ....... .+..+.+.+. .++..+..++.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  393 (466)
T COG2319         321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL------KTLEGHS-NVLSVSFSPDGRVVSSGSTDGT  393 (466)
T ss_pred             EeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCcee------EEecCCc-eEEEEEECCCCCEEEEecCCCc
Confidence            665  777789999994332455555 5667 888999886411      2222222 2777777663 33333578999


Q ss_pred             EEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          415 INIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       415 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      +.+|+.............     ...+....+++++..+++++  .++.+++|+...
T Consensus       394 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  443 (466)
T COG2319         394 VRLWDLSTGSLLRNLDGH-----TSRVTSLDFSPDGKSLASGS--SDNTIRLWDLKT  443 (466)
T ss_pred             eEEEecccCeeeeeccCC-----CCcEEEEEECCCCcEEEEec--CCCcEEEEeccC
Confidence            999999988777766321     16788899999999999977  669999999888

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1e-16  Score=129.55  Aligned_cols=231  Identities=13%  Similarity=0.108  Sum_probs=157.8

Q ss_pred             CcCcEEEEeeCCCceEEec-----------CC-ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCC
Q 010784          176 RTENVLVTSSCDHSIRLWW-----------KG-SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG  243 (501)
Q Consensus       176 ~~~~~l~s~~~dg~i~vwd-----------~~-~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~  243 (501)
                      |.+++|+.|+.+|+|.+..           .+ ..+..+++|.++|..++|+      ..+|++|+ ||.|+-|..+...
T Consensus        20 p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~------d~~Lls~g-dG~V~gw~W~E~~   92 (325)
T KOG0649|consen   20 PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH------DDFLLSGG-DGLVYGWEWNEEE   92 (325)
T ss_pred             CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee------hhheeecc-CceEEEeeehhhh
Confidence            3899999999999999985           11 2344568999999999995      35777776 4999999877644


Q ss_pred             cccccccee--eccCC-----CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC
Q 010784          244 KRGQQALKA--TLYGH-----EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE  316 (501)
Q Consensus       244 ~~~~~~~~~--~~~~~-----~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (501)
                      +....+..-  ...-|     -..|+++.+.|..+. +++++.|+.++-||+++++                        
T Consensus        93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~------------------------  147 (325)
T KOG0649|consen   93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGR------------------------  147 (325)
T ss_pred             hhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCE------------------------
Confidence            311000000  01112     235788888885444 4555588999999988874                        


Q ss_pred             CeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCc---ccccCc-
Q 010784          317 SMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPM---AELDGH-  391 (501)
Q Consensus       317 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~---~~~~~h-  391 (501)
                                          ..+++++|.+.|.++.--.....+++|++|+ +|+||.++.+.+...++.   ..+..| 
T Consensus       148 --------------------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~  207 (325)
T KOG0649|consen  148 --------------------IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW  207 (325)
T ss_pred             --------------------EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence                                3467889999999998866666788999888 999999998765111111   112222 


Q ss_pred             ccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          392 VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       392 ~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ...|.+++.+.+- +++| ..-.+.+|++++.++..+|..      ..++..+.|..  +.+++++  +...|.-|.++
T Consensus       208 g~wigala~~edW-lvCG-gGp~lslwhLrsse~t~vfpi------pa~v~~v~F~~--d~vl~~G--~g~~v~~~~l~  274 (325)
T KOG0649|consen  208 GKWIGALAVNEDW-LVCG-GGPKLSLWHLRSSESTCVFPI------PARVHLVDFVD--DCVLIGG--EGNHVQSYTLN  274 (325)
T ss_pred             CceeEEEeccCce-EEec-CCCceeEEeccCCCceEEEec------ccceeEeeeec--ceEEEec--cccceeeeeec
Confidence            3457788777764 4444 445799999999998888842      45677777744  4666666  44677777654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=8.5e-19  Score=164.62  Aligned_cols=243  Identities=19%  Similarity=0.303  Sum_probs=189.2

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~  220 (501)
                      .+.++.+.||...|+|+.|..             .|.++++|+.|..++||.  ++.++....||.+.|+.++.+    .
T Consensus       180 mk~ikrLlgH~naVyca~fDr-------------tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs----~  242 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDR-------------TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS----S  242 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeecc-------------ccceEeecCccceeeeeeccchhhhccCCCCccccchhccc----h
Confidence            355677889999999999988             899999999999999998  888999999999999999985    6


Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      ++.++++++.|..|++|.+..+.      ++..+.+|++.|++|+|+|-     .+.+.||++++||.+-...+..... 
T Consensus       243 ~n~~iaaaS~D~vIrvWrl~~~~------pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp-  310 (1113)
T KOG0644|consen  243 NNTMIAAASNDKVIRVWRLPDGA------PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRP-  310 (1113)
T ss_pred             hhhhhhhcccCceEEEEecCCCc------hHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCC-
Confidence            77889999999999999999987      68999999999999999983     3788999999999882211100000 


Q ss_pred             cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                                                            ..+. ....+.++.|..++.-+++|+.++ -..|.+...   
T Consensus       311 --------------------------------------~~~~-~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---  348 (1113)
T KOG0644|consen  311 --------------------------------------LKFT-EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---  348 (1113)
T ss_pred             --------------------------------------CCcc-cccceeeeeccccccccccccCCcccccchhhHh---
Confidence                                                  0001 134566777878888999999888 777776532   


Q ss_pred             CCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE-EEe
Q 010784          380 VKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI-VTA  456 (501)
Q Consensus       380 ~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~s~  456 (501)
                               ..+...+.-+..+.+  .+.++.-.+..+.+|++.+|.+.+.+     .+|...+..+.++|-+..+ .++
T Consensus       349 ---------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-----~ghsd~~yvLd~Hpfn~ri~msa  414 (1113)
T KOG0644|consen  349 ---------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-----MGHSDEVYVLDVHPFNPRIAMSA  414 (1113)
T ss_pred             ---------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh-----cccccceeeeeecCCCcHhhhhc
Confidence                     223333333444434  45555567889999999999999988     6788899999999977655 466


Q ss_pred             ecCCCceEEEeeccCC
Q 010784          457 SYGEPGLLQFRDFSNA  472 (501)
Q Consensus       457 ~~d~~g~i~~w~~~~~  472 (501)
                      +  .||...|||+-.+
T Consensus       415 g--~dgst~iwdi~eg  428 (1113)
T KOG0644|consen  415 G--YDGSTIIWDIWEG  428 (1113)
T ss_pred             c--CCCceEeeecccC
Confidence            6  5599999996543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=7.5e-18  Score=151.24  Aligned_cols=260  Identities=16%  Similarity=0.211  Sum_probs=170.0

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeec-cCCCCceEEEEeeecCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCF-KGHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~-~~h~~~v~~l~~s~~~~~  220 (501)
                      .....|.||++.|+|++|+.             +|.+|++|+.|-.+.|||  ..+.+..+ .+|.+.|.++.|-|  ..
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~-------------dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP--~t  105 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNA-------------DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVP--YT  105 (758)
T ss_pred             chhhhhccccceecceeecC-------------CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeec--cC
Confidence            44567899999999999999             899999999999999999  55555554 58999999999975  45


Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCcc----ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKR----GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS  296 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~  296 (501)
                      +..++++|+.|..|+++|+...+..    +.......+..|...|..|+..|...+.+.++++||+|+-+|++....-..
T Consensus       106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence            6689999999999999999863221    112245566789999999999997779999999999999999997532111


Q ss_pred             eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecC
Q 010784          297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIR  374 (501)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~  374 (501)
                      ..       ......                           ..+...--...++.++|. ..+|++|+.|- .++||.+
T Consensus       186 ~~-------~~~~~l---------------------------~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  186 DE-------DCPSIL---------------------------VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             cc-------cccHHH---------------------------HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            00       000000                           011111233568889986 67899999999 9999976


Q ss_pred             CCCCCCCCCCcccccCcccCeEEEEec-CCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE
Q 010784          375 RSQDAVKPQPMAELDGHVGSVTQLHMD-PYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI  453 (501)
Q Consensus       375 ~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  453 (501)
                      .....        +..  ....  ... |.       .++.|+.|....-+...-..    ..-...++-+.|+|+|.-|
T Consensus       232 r~lks--------~~s--~~~~--~~~pp~-------~~~cv~yf~p~hlkn~~gn~----~~~~~~~t~vtfnpNGtEl  288 (758)
T KOG1310|consen  232 RVLKS--------FRS--DGTM--NTCPPK-------DCRCVRYFSPGHLKNSQGNL----DRYITCCTYVTFNPNGTEL  288 (758)
T ss_pred             hhccC--------CCC--Cccc--cCCCCc-------ccchhheecCccccCccccc----ccceeeeEEEEECCCCcEE
Confidence            53221        111  0010  011 10       11112222111100000000    0001235678999999766


Q ss_pred             EEeecCCCceEEEeeccCCcccee
Q 010784          454 VTASYGEPGLLQFRDFSNATCPVL  477 (501)
Q Consensus       454 ~s~~~d~~g~i~~w~~~~~~~~~~  477 (501)
                      ++.-  ....|+++|+..++.+..
T Consensus       289 Lvs~--~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  289 LVSW--GGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             EEee--CCeEEEEEeecCCCCcee
Confidence            6554  336899999998876544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.77  E-value=2.2e-17  Score=151.67  Aligned_cols=251  Identities=15%  Similarity=0.199  Sum_probs=187.2

Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA  232 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg  232 (501)
                      .|+.++|-|             ||..|+.+. +..+.+||  .|..+.++++|...|.|++|+    .+|+.+++|+.|.
T Consensus        14 ci~d~afkP-------------DGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys----~dGkrFASG~aDK   75 (1081)
T KOG1538|consen   14 CINDIAFKP-------------DGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYA----KDGKRFASGSADK   75 (1081)
T ss_pred             chheeEECC-------------CCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEc----cCCceeccCCCce
Confidence            899999999             777777766 45688999  889999999999999999997    8999999999999


Q ss_pred             cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceee
Q 010784          233 TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM  312 (501)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  312 (501)
                      .|.+|+-.-...        .-..|+..|.|+.|+| -...+++++-. ..-+|..........                
T Consensus        76 ~VI~W~~klEG~--------LkYSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V~K~----------------  129 (1081)
T KOG1538|consen   76 SVIIWTSKLEGI--------LKYSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSVSKH----------------  129 (1081)
T ss_pred             eEEEecccccce--------eeeccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhHHhh----------------
Confidence            999998765431        2236999999999998 66788888764 367787665422110                


Q ss_pred             ecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc
Q 010784          313 KCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH  391 (501)
Q Consensus       313 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h  391 (501)
                                                    .-...+.+++|..||++++.|-.++ |.|-+-...+.    ..+..-.+.
T Consensus       130 ------------------------------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek----~~I~Rpgg~  175 (1081)
T KOG1538|consen  130 ------------------------------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK----VKIERPGGS  175 (1081)
T ss_pred             ------------------------------hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc----eEEeCCCCC
Confidence                                          0145678999999999999999888 88775433221    123333456


Q ss_pred             ccCeEEEEecCC------eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEE
Q 010784          392 VGSVTQLHMDPY------KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQ  465 (501)
Q Consensus       392 ~~~v~~l~~~~~------~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~  465 (501)
                      ..+|.+++|+|.      .+++......++.++.+. |+.+..-     ..-.-...++.+.++|.++..||.|  +.+.
T Consensus       176 Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~-----r~L~FdP~CisYf~NGEy~LiGGsd--k~L~  247 (1081)
T KOG1538|consen  176 NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKD-----RALNFDPCCISYFTNGEYILLGGSD--KQLS  247 (1081)
T ss_pred             CCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccc-----ccCCCCchhheeccCCcEEEEccCC--CceE
Confidence            789999999985      567777788888888874 5544322     1112345688899999999999955  5554


Q ss_pred             Ee------------------e--ccCCccceeecCCCCceeeeccc
Q 010784          466 FR------------------D--FSNATCPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       466 ~w------------------~--~~~~~~~~~s~~~d~~~~~w~~~  491 (501)
                      ++                  .  +.+....++.|..||++-.+++.
T Consensus       248 ~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  248 LFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            44                  3  34566677889999999988875

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=3.4e-16  Score=134.19  Aligned_cols=236  Identities=14%  Similarity=0.169  Sum_probs=177.6

Q ss_pred             CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC--eEE
Q 010784          207 GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS--KVR  284 (501)
Q Consensus       207 ~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg--~v~  284 (501)
                      ..+..+.|    +.+...|..|+.||. +++......+     +. ........|.-+-|+   ..+++..+.+.  .++
T Consensus         6 ~ti~~~~~----Nqd~~~lsvGs~~Gy-k~~~~~~~~k-----~~-~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lk   71 (391)
T KOG2110|consen    6 PTINFIGF----NQDSTLLSVGSKDGY-KIFSCSPFEK-----CF-SKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLK   71 (391)
T ss_pred             cceeeeee----ccceeEEEccCCCce-eEEecCchHH-----hh-cccCCCeEEEEeecc---cceeEEEecCCCceEE
Confidence            45666667    478888889998875 7888776542     11 111122233333443   34555555443  488


Q ss_pred             EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc---CCCcEEEEEEcCCCcEEE
Q 010784          285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI---CKPILHSFSIMPSKSLIC  361 (501)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~  361 (501)
                      +++++....+-      ....+..+.++..+.+.+++.-...|++||+++.+.+.++..   +...+.++++++.+.+++
T Consensus        72 v~~~Kk~~~IC------e~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA  145 (391)
T KOG2110|consen   72 VVHFKKKTTIC------EIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA  145 (391)
T ss_pred             EEEcccCceEE------EEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEE
Confidence            88888764332      235677888999999999999888999999999999887764   344566666666777888


Q ss_pred             EEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCc-EEEEeCCCcccccccccCCCCC
Q 010784          362 TGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLR-INIWETDTGMLANSLLCNYPEE  436 (501)
Q Consensus       362 ~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~-i~iwd~~~~~~~~~~~~~~~~~  436 (501)
                      --+  ..+ |.+||..+-+.      +..+..|.+.+-+++|+++ .++|++|..|+ |||+.+.+|+.+..|+.+.   
T Consensus       146 yp~s~t~GdV~l~d~~nl~~------v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~---  216 (391)
T KOG2110|consen  146 YPGSTTSGDVVLFDTINLQP------VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT---  216 (391)
T ss_pred             ecCCCCCceEEEEEccccee------eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc---
Confidence            655  344 99999998554      4889999999999999999 99999999987 6999999999999997543   


Q ss_pred             CCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          437 ADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       437 ~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      ....|.+++|+||+++|++.|  +.++|+++.++...
T Consensus       217 ~~~~IySL~Fs~ds~~L~~sS--~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  217 YPVSIYSLSFSPDSQFLAASS--NTETVHIFKLEKVS  251 (391)
T ss_pred             eeeEEEEEEECCCCCeEEEec--CCCeEEEEEecccc
Confidence            146789999999999999998  77999999976533

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=3.1e-17  Score=145.33  Aligned_cols=286  Identities=17%  Similarity=0.213  Sum_probs=206.7

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeee-ccCCCCceEEEEeeecCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRC-FKGHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~-~~~h~~~v~~l~~s~~~~~  220 (501)
                      .+...|.+|.+.|+.|.|+.             .|..|++|+.|..|.+||  .+..... ..+|...|....|.|  ..
T Consensus       133 ~l~~kL~~H~GcVntV~FN~-------------~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP--~s  197 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQ-------------RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIP--FS  197 (559)
T ss_pred             hhhhcccCCCCccceeeecc-------------cCceeeccCccceEEeehhhccCcccccccccccchhhhhccC--CC
Confidence            45567889999999999998             899999999999999999  5554444 457988888888864  34


Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      +...+++++.||.|++=.+...+.   ..-...+..|.++|..++.-|.....|.+++.|+.+.-+|+++........+ 
T Consensus       198 ~d~ti~~~s~dgqvr~s~i~~t~~---~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c-  273 (559)
T KOG1334|consen  198 GDRTIVTSSRDGQVRVSEILETGY---VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC-  273 (559)
T ss_pred             CCcCceeccccCceeeeeeccccc---eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee-
Confidence            567899999999999988765442   1224456779999999999998899999999999999999998754322211 


Q ss_pred             cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC---cEEEEEEcCCC-cEEEEEcCCc-EEEEecCC
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP---ILHSFSIMPSK-SLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~v~~v~~~~~~-~~l~~~~~d~-i~iwd~~~  375 (501)
                                                              -..+..   ..+.++..|.. ..+++|+.+. +++||.+.
T Consensus       274 ----------------------------------------r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~  313 (559)
T KOG1334|consen  274 ----------------------------------------READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRR  313 (559)
T ss_pred             ----------------------------------------eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccc
Confidence                                                    111122   45678888864 4888999888 99999987


Q ss_pred             CCCCCCCCCcccccCc------ccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcc------------cccc-cccCCC
Q 010784          376 SQDAVKPQPMAELDGH------VGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGM------------LANS-LLCNYP  434 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h------~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~------------~~~~-~~~~~~  434 (501)
                      .........+..+..|      .-.|++++++.+  .++++- .|-.|+++.-.-+.            .... +++|..
T Consensus       314 ~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN  392 (559)
T KOG1334|consen  314 IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY-NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN  392 (559)
T ss_pred             hhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-cccceEEeccccccCCCCCCCcchhhccchhhccccc
Confidence            5543212223333322      346999999966  888875 78889999543221            1222 443332


Q ss_pred             CCCCcceeeeEe-eccccEEEEeecCCCceEEEeeccCCc---------------------cceeecCCCCceeeecccC
Q 010784          435 EEADISTGCSAM-AVSGCRIVTASYGEPGLLQFRDFSNAT---------------------CPVLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       435 ~~~~~~v~~~~~-s~~g~~l~s~~~d~~g~i~~w~~~~~~---------------------~~~~s~~~d~~~~~w~~~~  492 (501)
                         ...|.++.| -|...|+++|+  +-|.|.+|+-..++                     ..+++.+-|..||||.+..
T Consensus       393 ---~~TVKgVNFfGPrsEyVvSGS--DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  393 ---SRTVKGVNFFGPRSEYVVSGS--DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             ---ccccceeeeccCccceEEecC--ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence               233666654 58889999999  77999999944322                     2356888999999999864


Q ss_pred             CC
Q 010784          493 YS  494 (501)
Q Consensus       493 ~~  494 (501)
                      .+
T Consensus       468 ~e  469 (559)
T KOG1334|consen  468 AE  469 (559)
T ss_pred             cc
Confidence            43

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.76  E-value=1.5e-16  Score=150.71  Aligned_cols=267  Identities=13%  Similarity=0.135  Sum_probs=188.7

Q ss_pred             hhccccCCee-eEEEecCCCCceEEeeC-CcEEEeecCCeeeEEEEeccccccc-----ceecccCCcceeEEEeeccCc
Q 010784           94 LQFKFVDPLD-VCFYSVAKPHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYY-----RATLSDHKARITCMRLFPLHE  166 (501)
Q Consensus        94 ~~~~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~-----~~~~~~h~~~V~~~~~~~~~~  166 (501)
                      ..|....+.. ...+..+.+|.|+.|+| +..++|.|..+|.|-+||+..+...     ......|..+|+.+.|...  
T Consensus       225 ~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~--  302 (555)
T KOG1587|consen  225 LVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN--  302 (555)
T ss_pred             EEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc--
Confidence            3455555533 34455677799999997 4567778889999999999875331     1223468999999999872  


Q ss_pred             CcccccCCCCcCcEEEEeeCCCceEEecCCce--------eeecc------CCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784          167 TSLFRSEPQRTENVLVTSSCDHSIRLWWKGSC--------QRCFK------GHNGPVSTLSDKLLGDGSGKILASGGEDA  232 (501)
Q Consensus       167 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--------~~~~~------~h~~~v~~l~~s~~~~~~~~~l~sg~~dg  232 (501)
                               +.+.-|++++.||.|..|++...        .....      .-...+++++|.+   .+...++.|+.+|
T Consensus       303 ---------~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~---~~p~~FiVGTe~G  370 (555)
T KOG1587|consen  303 ---------EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP---TDPNHFIVGTEEG  370 (555)
T ss_pred             ---------CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc---CCCceEEEEcCCc
Confidence                     13466999999999999972111        11111      1234688999973   5567899999999


Q ss_pred             cEEEEeccCCCcc--ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784          233 TVRLWSLSSSGKR--GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV  310 (501)
Q Consensus       233 ~i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  310 (501)
                      .|..=+.......  ...+....+..|.++|+.+.++|-....+++++ |.+|++|......                  
T Consensus       371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~------------------  431 (555)
T KOG1587|consen  371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA------------------  431 (555)
T ss_pred             EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC------------------
Confidence            9877333322210  011124456678999999999987666777776 8999999876221                  


Q ss_pred             eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc
Q 010784          311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL  388 (501)
Q Consensus       311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~  388 (501)
                                               .++..+..+...+++++|||. ...|+++..++ |.+||+.....    .++.+.
T Consensus       432 -------------------------~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~----~Pv~s~  482 (555)
T KOG1587|consen  432 -------------------------SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE----EPVLSQ  482 (555)
T ss_pred             -------------------------CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc----CCcccc
Confidence                                     112233445667999999997 56777777777 99999987663    455666


Q ss_pred             cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784          389 DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       389 ~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      ..+....+.+.|++. +++++|...|++++|++..
T Consensus       483 ~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  483 KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            656677788889997 9999999999999999964

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.76  E-value=1.9e-16  Score=133.12  Aligned_cols=261  Identities=14%  Similarity=0.106  Sum_probs=189.8

Q ss_pred             EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc--cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE--SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~--~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      +..-..+|+|.+|++|+..+|.+...+.+.||.....  .+..++++.|...|++|+|+|             ..+.|++
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-------------~snrIvt   72 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-------------KSNRIVT   72 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-------------CCCceeE
Confidence            3445678999999999999999999999999998764  357889999999999999999             7899999


Q ss_pred             eeCCCceEEec-----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784          184 SSCDHSIRLWW-----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE  258 (501)
Q Consensus       184 ~~~dg~i~vwd-----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  258 (501)
                      ++.|..-+||.     +-+....+..+....+++.|+    |.++.|++|+.-..|.||-++....  =+...+.-+.+.
T Consensus        73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws----P~enkFAVgSgar~isVcy~E~ENd--WWVsKhikkPir  146 (361)
T KOG1523|consen   73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS----PKENKFAVGSGARLISVCYYEQEND--WWVSKHIKKPIR  146 (361)
T ss_pred             ccCCCCccccccCCCCeeccceeEEEeccceeeEeec----CcCceEEeccCccEEEEEEEecccc--eehhhhhCCccc
Confidence            99999999996     233445566789999999998    8899999999999999999887542  111123445677


Q ss_pred             CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784          259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV  338 (501)
Q Consensus       259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  338 (501)
                      ..|+++.|+| ++-++++|+.|+..+|+..--.....       . +...+..    .+              +.-++.+
T Consensus       147 Stv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vde-------k-pap~pWg----sk--------------~PFG~lm  199 (361)
T KOG1523|consen  147 STVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDE-------K-PAPTPWG----SK--------------MPFGQLM  199 (361)
T ss_pred             cceeeeeccC-CcceecccccCcceeEEEEeeecccc-------C-CCCCCCc----cC--------------CcHHHHH
Confidence            8899999998 77899999999999999753221100       0 0000000    00              0012333


Q ss_pred             eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784          339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN  416 (501)
Q Consensus       339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~  416 (501)
                      ..+....+.+..+.|+|+|..|+-.+.|. +.+-|...+...     +..+....-+..++.|-.+ .++++| .|..=.
T Consensus       200 ~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~-----v~~~~~~~lP~ls~~~ise~~vv~ag-~~c~P~  273 (361)
T KOG1523|consen  200 SEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER-----VQSVATAQLPLLSVSWISENSVVAAG-YDCGPV  273 (361)
T ss_pred             HhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh-----ccchhhccCCceeeEeecCCceeecC-CCCCce
Confidence            34434578899999999999999999888 999998876422     2333333466777777666 555554 664333


Q ss_pred             EE
Q 010784          417 IW  418 (501)
Q Consensus       417 iw  418 (501)
                      ++
T Consensus       274 lf  275 (361)
T KOG1523|consen  274 LF  275 (361)
T ss_pred             EE
Confidence            33

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=1.3e-14  Score=124.73  Aligned_cols=219  Identities=14%  Similarity=0.171  Sum_probs=157.2

Q ss_pred             cCcEEEEeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC--cEEEEeccCCCccccccce
Q 010784          177 TENVLVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA--TVRLWSLSSSGKRGQQALK  251 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~  251 (501)
                      +...|..|+.|| .++++   .+++-... .....|.-+-|+      ..++|..+.+.  .+++.+++....      +
T Consensus        16 d~~~lsvGs~~G-yk~~~~~~~~k~~~~~-~~~~~IvEmLFS------SSLvaiV~~~qpr~Lkv~~~Kk~~~------I   81 (391)
T KOG2110|consen   16 DSTLLSVGSKDG-YKIFSCSPFEKCFSKD-TEGVSIVEMLFS------SSLVAIVSIKQPRKLKVVHFKKKTT------I   81 (391)
T ss_pred             ceeEEEccCCCc-eeEEecCchHHhhccc-CCCeEEEEeecc------cceeEEEecCCCceEEEEEcccCce------E
Confidence            788899999988 46776   22221111 123345566664      34555555443  488888887652      3


Q ss_pred             eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe-----CCc
Q 010784          252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS-----GSS  326 (501)
Q Consensus       252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  326 (501)
                      ..+. ...+|.++.++   .+.|+++=.+. |+|||+++.+.+..+....  .......+++.+....+++-     .+.
T Consensus        82 Ce~~-fpt~IL~VrmN---r~RLvV~Lee~-IyIydI~~MklLhTI~t~~--~n~~gl~AlS~n~~n~ylAyp~s~t~Gd  154 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMN---RKRLVVCLEES-IYIYDIKDMKLLHTIETTP--PNPKGLCALSPNNANCYLAYPGSTTSGD  154 (391)
T ss_pred             EEEe-cCCceEEEEEc---cceEEEEEccc-EEEEecccceeehhhhccC--CCccceEeeccCCCCceEEecCCCCCce
Confidence            3332 45678888886   33566665544 9999999987655433221  22233556677776666663     248


Q ss_pred             EEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCc--ccCeEEEEecC
Q 010784          327 VVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGH--VGSVTQLHMDP  402 (501)
Q Consensus       327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~  402 (501)
                      |.+||..+.+.+..+..|++.+.+++|+++|.+||++++.|  ||++.+.+++.+      .+|+.-  ...|.+++|+|
T Consensus       155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl------~eFRRG~~~~~IySL~Fs~  228 (391)
T KOG2110|consen  155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL------YEFRRGTYPVSIYSLSFSP  228 (391)
T ss_pred             EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe------eeeeCCceeeEEEEEEECC
Confidence            99999999999999999999999999999999999999766  999999998766      555422  34689999999


Q ss_pred             C-eEEEEecCCCcEEEEeCCC
Q 010784          403 Y-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       403 ~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      + .+|++.|..++|++|.++.
T Consensus       229 ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  229 DSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CCCeEEEecCCCeEEEEEecc
Confidence            9 9999989999999999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=5.8e-15  Score=136.99  Aligned_cols=283  Identities=13%  Similarity=0.136  Sum_probs=172.4

Q ss_pred             EeecCCeeeEEEEecccccc--cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe-eCCCceEEec-C--Cce
Q 010784          125 STQGSSIQNIKIDNFLSESY--YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS-SCDHSIRLWW-K--GSC  198 (501)
Q Consensus       125 ~~~g~~d~~i~vw~~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~vwd-~--~~~  198 (501)
                      .++...++.|.+|++.+..+  .+..+. +.+....++++|             ++++|+++ ..++.|.+|+ .  +..
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~sp-------------d~~~lyv~~~~~~~i~~~~~~~~g~l   70 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISP-------------DKRHLYVGVRPEFRVLSYRIADDGAL   70 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECC-------------CCCEEEEEECCCCcEEEEEECCCCce
Confidence            34456689999999964222  444443 345677889998             78887665 4578899997 2  222


Q ss_pred             --eeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784          199 --QRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV  275 (501)
Q Consensus       199 --~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  275 (501)
                        +.... ..+....++|+    ++++++++++. ++.|.+|++++....  ......+. +......++++|+....++
T Consensus        71 ~~~~~~~-~~~~p~~i~~~----~~g~~l~v~~~~~~~v~v~~~~~~g~~--~~~~~~~~-~~~~~~~~~~~p~g~~l~v  142 (330)
T PRK11028         71 TFAAESP-LPGSPTHISTD----HQGRFLFSASYNANCVSVSPLDKDGIP--VAPIQIIE-GLEGCHSANIDPDNRTLWV  142 (330)
T ss_pred             EEeeeec-CCCCceEEEEC----CCCCEEEEEEcCCCeEEEEEECCCCCC--CCceeecc-CCCcccEeEeCCCCCEEEE
Confidence              22222 23355678886    88998888764 889999999753320  01122222 2234566788984444445


Q ss_pred             EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC
Q 010784          276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP  355 (501)
Q Consensus       276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~  355 (501)
                      +...++.|.+||+.+...+....                                     ....... .......+.|+|
T Consensus       143 ~~~~~~~v~v~d~~~~g~l~~~~-------------------------------------~~~~~~~-~g~~p~~~~~~p  184 (330)
T PRK11028        143 PCLKEDRIRLFTLSDDGHLVAQE-------------------------------------PAEVTTV-EGAGPRHMVFHP  184 (330)
T ss_pred             eeCCCCEEEEEEECCCCcccccC-------------------------------------CCceecC-CCCCCceEEECC
Confidence            66677999999997632111000                                     0000011 123356789999


Q ss_pred             CCcEEEEEcC-Cc-EEEEecCCCCCCCCCCCcccccC------cccCeEEEEecCC-eEEEEe-cCCCcEEEEeCCCccc
Q 010784          356 SKSLICTGGI-GK-AMTWDIRRSQDAVKPQPMAELDG------HVGSVTQLHMDPY-KIVTGG-RDDLRINIWETDTGML  425 (501)
Q Consensus       356 ~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~~~-~~l~~g-s~dg~i~iwd~~~~~~  425 (501)
                      +|++++++.. ++ |.+|++......  .+.+..+..      +......+.++|+ +++.++ ..++.|.+|++.+...
T Consensus       185 dg~~lyv~~~~~~~v~v~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~  262 (330)
T PRK11028        185 NQQYAYCVNELNSSVDVWQLKDPHGE--IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS  262 (330)
T ss_pred             CCCEEEEEecCCCEEEEEEEeCCCCC--EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence            9999988875 55 999999742111  111222211      1123346889999 555554 4578999999965432


Q ss_pred             ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      ..++..+...  ......+.|+|||++|+++.. .++.|.+|+++..
T Consensus       263 ~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~~~  306 (330)
T PRK11028        263 VLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQ-KSHHISVYEIDGE  306 (330)
T ss_pred             eEEEeEEEec--cccCCceEECCCCCEEEEEEc-cCCcEEEEEEcCC
Confidence            2222211111  123457899999999999875 4799999998643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=7.7e-16  Score=150.97  Aligned_cols=299  Identities=14%  Similarity=0.106  Sum_probs=193.7

Q ss_pred             hhccccCCeeeEEEecCCCCceEEeeCCc-EEEeecCCeeeEEEEecccc------cccceecccCCcceeEEEeeccCc
Q 010784           94 LQFKFVDPLDVCFYSVAKPHDHILLDNND-IFSTQGSSIQNIKIDNFLSE------SYYRATLSDHKARITCMRLFPLHE  166 (501)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~g~~d~~i~vw~~~~~------~~~~~~~~~h~~~V~~~~~~~~~~  166 (501)
                      ..|+....+.+.++.|...+..++.++.. .++++|+.||+|++|+...-      .+...++......+.++...+   
T Consensus      1032 ~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~--- 1108 (1431)
T KOG1240|consen 1032 PGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG--- 1108 (1431)
T ss_pred             CCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc---
Confidence            34667677778888888889999998766 99999999999999997642      122223333456788888887   


Q ss_pred             CcccccCCCCcCcEEEEeeCCCceEEecCCc---------eeeeccC-CCCceEEE-EeeecCCCCCC-EEEEeeCCCcE
Q 010784          167 TSLFRSEPQRTENVLVTSSCDHSIRLWWKGS---------CQRCFKG-HNGPVSTL-SDKLLGDGSGK-ILASGGEDATV  234 (501)
Q Consensus       167 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~-h~~~v~~l-~~s~~~~~~~~-~l~sg~~dg~i  234 (501)
                                .++.+|.++.||.|++.+.+.         +.+.... ..+.+.+| +|.   ...+. .++.+...+.|
T Consensus      1109 ----------~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~---~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1109 ----------NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFT---AIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred             ----------CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccc---ccccceeEEEEEeccce
Confidence                      789999999999999986111         1111222 22334444 332   23344 78888889999


Q ss_pred             EEEeccCCCccccccceee--ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceee
Q 010784          235 RLWSLSSSGKRGQQALKAT--LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM  312 (501)
Q Consensus       235 ~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  312 (501)
                      ..||.++...      ...  .....+.|++++.+| .++.++.|+..|.+.+||++=+.++.+......    ..+..+
T Consensus      1176 v~~D~r~~~~------~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~----~~i~~v 1244 (1431)
T KOG1240|consen 1176 VSWDTRMRHD------AWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR----APIRHV 1244 (1431)
T ss_pred             EEecchhhhh------HHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCccc----CCcceE
Confidence            9999988653      222  233467899999998 678999999999999999998776554433222    222222


Q ss_pred             ec---CC-CeEEEEeC----CcEEEEEcCCCceEeeeccC-----------------CCc--EEEEEEcCCCcEEEEEcC
Q 010784          313 KC---HE-SMLYIASG----SSVVTIDLRTMQKVMTPAIC-----------------KPI--LHSFSIMPSKSLICTGGI  365 (501)
Q Consensus       313 ~~---~~-~~~~~~~~----~~i~~~d~~~~~~~~~~~~~-----------------~~~--v~~v~~~~~~~~l~~~~~  365 (501)
                      ..   .+ +...++++    +.+.+|++.++.....+...                 ...  .....+...+.++.+|+.
T Consensus      1245 ~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs 1324 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS 1324 (1431)
T ss_pred             EeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC
Confidence            11   12 12223322    27999999988665444322                 011  111222223456666766


Q ss_pred             Cc-EEEEecCCCCCCC-----------------------C---------------------------CCCcccccCcccC
Q 010784          366 GK-AMTWDIRRSQDAV-----------------------K---------------------------PQPMAELDGHVGS  394 (501)
Q Consensus       366 d~-i~iwd~~~~~~~~-----------------------~---------------------------~~~~~~~~~h~~~  394 (501)
                      |. ||.||....+...                       .                           ..+...-..|..+
T Consensus      1325 d~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~ 1404 (1431)
T KOG1240|consen 1325 DMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDP 1404 (1431)
T ss_pred             ccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccch
Confidence            66 9999987643220                       0                           0000111246778


Q ss_pred             eEEEEecCC--eEEEEecCCCcEEEEe
Q 010784          395 VTQLHMDPY--KIVTGGRDDLRINIWE  419 (501)
Q Consensus       395 v~~l~~~~~--~~l~~gs~dg~i~iwd  419 (501)
                      |+++++...  .++++++.||.|+||.
T Consensus      1405 Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1405 ITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhhhhhhccCccEEEEecCCCeeeecC
Confidence            898887665  7899999999999994

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=3.7e-16  Score=131.44  Aligned_cols=214  Identities=16%  Similarity=0.169  Sum_probs=167.6

Q ss_pred             ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC
Q 010784          202 FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS  281 (501)
Q Consensus       202 ~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg  281 (501)
                      +..-..+|+|.+|+    +++..++.+..+..|.||.....+.   ++...++..|...|++|.|+| ..+.|++++.|.
T Consensus         6 ~~~~~~pitchAwn----~drt~iAv~~~~~evhiy~~~~~~~---w~~~htls~Hd~~vtgvdWap-~snrIvtcs~dr   77 (361)
T KOG1523|consen    6 FHRLLEPITCHAWN----SDRTQIAVSPNNHEVHIYSMLGADL---WEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDR   77 (361)
T ss_pred             eeeccCceeeeeec----CCCceEEeccCCceEEEEEecCCCC---ceeceehhhhCcceeEEeecC-CCCceeEccCCC
Confidence            33346799999996    8999999999999999999887652   446888999999999999998 778999999999


Q ss_pred             eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEE
Q 010784          282 KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLIC  361 (501)
Q Consensus       282 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~  361 (501)
                      .-++|....+.                                         +.++...+..++...+++.|+|.++.|+
T Consensus        78 nayVw~~~~~~-----------------------------------------~WkptlvLlRiNrAAt~V~WsP~enkFA  116 (361)
T KOG1523|consen   78 NAYVWTQPSGG-----------------------------------------TWKPTLVLLRINRAATCVKWSPKENKFA  116 (361)
T ss_pred             CccccccCCCC-----------------------------------------eeccceeEEEeccceeeEeecCcCceEE
Confidence            99999984331                                         1123334455788999999999999999


Q ss_pred             EEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC-----C------------
Q 010784          362 TGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD-----T------------  422 (501)
Q Consensus       362 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~-----~------------  422 (501)
                      +|+... |.||-+.....=  ....+.-+.+...|+++.|+|+ -++++||.|+..+||..-     +            
T Consensus       117 VgSgar~isVcy~E~ENdW--WVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~P  194 (361)
T KOG1523|consen  117 VGSGARLISVCYYEQENDW--WVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMP  194 (361)
T ss_pred             eccCccEEEEEEEecccce--ehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCc
Confidence            999998 999887754321  1111233456788999999999 888999999999999752     1            


Q ss_pred             -cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          423 -GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       423 -~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                       |+++..+     ....+.+..+.|+|+|..|+-.+  +|+.+.+-|...+.
T Consensus       195 FG~lm~E~-----~~~ggwvh~v~fs~sG~~lawv~--Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  195 FGQLMSEA-----SSSGGWVHGVLFSPSGNRLAWVG--HDSTVSFVDAAGPS  239 (361)
T ss_pred             HHHHHHhh-----ccCCCceeeeEeCCCCCEeeEec--CCCceEEeecCCCc
Confidence             2333333     23467899999999999999999  77999998866554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.72  E-value=5e-17  Score=143.12  Aligned_cols=289  Identities=10%  Similarity=0.127  Sum_probs=218.9

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      -+...+.++.+|.+++.|+..|.+-.+|+.++ ++...+. -...|.++.|..             +.++||++- ...+
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~-~L~~Ei~-v~Etv~Dv~~LH-------------neq~~AVAQ-K~y~  193 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK-KLHFEIN-VMETVRDVTFLH-------------NEQFFAVAQ-KKYV  193 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccc-eeeeeee-hhhhhhhhhhhc-------------chHHHHhhh-hceE
Confidence            34788999999999999999999999999984 5555553 346799999987             566666665 6789


Q ss_pred             EEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784          191 RLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH  269 (501)
Q Consensus       191 ~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  269 (501)
                      .||| .|..++.++.|. .|..+.|.    |.--+|++++..|.++.-|+.+++      .+..+....+.+..++-+| 
T Consensus       194 yvYD~~GtElHClk~~~-~v~rLeFL----PyHfLL~~~~~~G~L~Y~DVS~Gk------lVa~~~t~~G~~~vm~qNP-  261 (545)
T KOG1272|consen  194 YVYDNNGTELHCLKRHI-RVARLEFL----PYHFLLVAASEAGFLKYQDVSTGK------LVASIRTGAGRTDVMKQNP-  261 (545)
T ss_pred             EEecCCCcEEeehhhcC-chhhhccc----chhheeeecccCCceEEEeechhh------hhHHHHccCCccchhhcCC-
Confidence            9999 899999998664 68899997    566688999999999999999998      4778888888888899988 


Q ss_pred             CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE
Q 010784          270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH  349 (501)
Q Consensus       270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~  349 (501)
                      -+..+-+|...|+|.+|.....+++                                            ..+..|.++|.
T Consensus       262 ~NaVih~GhsnGtVSlWSP~skePL--------------------------------------------vKiLcH~g~V~  297 (545)
T KOG1272|consen  262 YNAVIHLGHSNGTVSLWSPNSKEPL--------------------------------------------VKILCHRGPVS  297 (545)
T ss_pred             ccceEEEcCCCceEEecCCCCcchH--------------------------------------------HHHHhcCCCcc
Confidence            4568889999999999998776543                                            33445899999


Q ss_pred             EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeC-CC--ccc
Q 010784          350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWET-DT--GML  425 (501)
Q Consensus       350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~-~~--~~~  425 (501)
                      ++++.++|+|++|.+-|. ++|||+++...+      .++.. ..+...+++|...++|.+ ....|.||.= ..  +..
T Consensus       298 siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql------~t~~t-p~~a~~ls~SqkglLA~~-~G~~v~iw~d~~~~s~~~  369 (545)
T KOG1272|consen  298 SIAVDRGGRYMATTGLDRKVKIWDLRNFYQL------HTYRT-PHPASNLSLSQKGLLALS-YGDHVQIWKDALKGSGHG  369 (545)
T ss_pred             eEEECCCCcEEeecccccceeEeeecccccc------ceeec-CCCccccccccccceeee-cCCeeeeehhhhcCCCCC
Confidence            999999999999999999 999999997644      44443 346778888888777775 5567999953 22  122


Q ss_pred             ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccceeecCCCCceeeecccCC
Q 010784          426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQCY  493 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s~~~d~~~~~w~~~~~  493 (501)
                      -.-+..|.   -...|..+.|.|-...|-.|..  .|.-         ..++.|+.+-..--|.-+.+
T Consensus       370 ~~pYm~H~---~~~~V~~l~FcP~EDvLGIGH~--~G~t---------silVPGsGePN~Ds~e~nPf  423 (545)
T KOG1272|consen  370 ETPYMNHR---CGGPVEDLRFCPYEDVLGIGHA--GGIT---------SILVPGSGEPNYDSLEDNPF  423 (545)
T ss_pred             Ccchhhhc---cCcccccceeccHHHeeecccc--CCce---------eEeccCCCCCCcchhccCcc
Confidence            22222222   2348999999999888888763  2422         23456666655555544444

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.72  E-value=4.4e-16  Score=139.65  Aligned_cols=255  Identities=16%  Similarity=0.172  Sum_probs=177.1

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEee-e---cCCCCCCE
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDK-L---LGDGSGKI  224 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s-~---~~~~~~~~  224 (501)
                      .|...|.|+.|+.             +.. +...+.|..+.+|+  .......+.-....|....+- +   ........
T Consensus        12 r~~e~vc~v~w~~-------------~ee-i~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~   77 (737)
T KOG1524|consen   12 RNSEKVCCVDWSS-------------NEE-IYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDT   77 (737)
T ss_pred             ccceeEEeecccc-------------cce-EEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcce
Confidence            6778889999987             444 44445566777775  332222222112222111110 0   00122357


Q ss_pred             EEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784          225 LASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       225 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                      |+.++.||.+.+.+-...       ....+..|.+.+.+-.|+| ++.-|+++++||.|++|.-. |..           
T Consensus        78 ~~i~s~DGkf~il~k~~r-------VE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrs-GML-----------  137 (737)
T KOG1524|consen   78 LLICSNDGRFVILNKSAR-------VERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRS-GML-----------  137 (737)
T ss_pred             EEEEcCCceEEEecccch-------hhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEecc-chH-----------
Confidence            888899999998775543       4567889999999999998 78889999999999999843 321           


Q ss_pred             cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCC
Q 010784          305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQP  384 (501)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~  384 (501)
                                                       ..++.....+|+|++|.|+.+-++-+..+.+.|=.+.....+     
T Consensus       138 ---------------------------------RStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~-----  179 (737)
T KOG1524|consen  138 ---------------------------------RSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKI-----  179 (737)
T ss_pred             ---------------------------------HHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccce-----
Confidence                                             112233467899999999977666665555666666654433     


Q ss_pred             cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC----
Q 010784          385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG----  459 (501)
Q Consensus       385 ~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d----  459 (501)
                       ...+.|.+-|.++.|++. .++++|+.|-..+|||.. |+.+.+-     ..|..+|++++|.|+ +.++.+++.    
T Consensus       180 -i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S-----~~~ey~ITSva~npd-~~~~v~S~nt~R~  251 (737)
T KOG1524|consen  180 -IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTS-----AAEEYAITSVAFNPE-KDYLLWSYNTARF  251 (737)
T ss_pred             -eEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccC-----Chhccceeeeeeccc-cceeeeeeeeeee
Confidence             678899999999999999 999999999999999964 6666665     567889999999999 777777764    


Q ss_pred             ---CCceEEEeeccCCccceeecCCCCce
Q 010784          460 ---EPGLLQFRDFSNATCPVLKHEVQNDS  485 (501)
Q Consensus       460 ---~~g~i~~w~~~~~~~~~~s~~~d~~~  485 (501)
                         .-|.|.-..++.++..++.|...|.+
T Consensus       252 ~~p~~GSifnlsWS~DGTQ~a~gt~~G~v  280 (737)
T KOG1524|consen  252 SSPRVGSIFNLSWSADGTQATCGTSTGQL  280 (737)
T ss_pred             cCCCccceEEEEEcCCCceeeccccCceE
Confidence               34555555566666666666666554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=9.3e-16  Score=148.17  Aligned_cols=254  Identities=19%  Similarity=0.205  Sum_probs=169.7

Q ss_pred             CCceEEee--CCcEEEeecCCeeeEEEEecccc----cccceeccc---C----CcceeEEEeeccCcCcccccCCCCcC
Q 010784          112 PHDHILLD--NNDIFSTQGSSIQNIKIDNFLSE----SYYRATLSD---H----KARITCMRLFPLHETSLFRSEPQRTE  178 (501)
Q Consensus       112 ~i~~~~~~--~~~~~~~~g~~d~~i~vw~~~~~----~~~~~~~~~---h----~~~V~~~~~~~~~~~~~~~~~~~~~~  178 (501)
                      .|+.+.+=  .|..++.+|+.||.|+||+--..    .+++..+.+   +    .+.=.-++|..             ..
T Consensus      1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-------------~~ 1177 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-------------QS 1177 (1387)
T ss_pred             ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh-------------hC
Confidence            37777774  57788999999999999974321    122222221   1    11112334443             55


Q ss_pred             cEEEEeeCCCceEEec--CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          179 NVLVTSSCDHSIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      .+|+++|.-..|+|||  ...+...+. +....|+++.-.   -..|+.+++|..||.|++||.+....   ...+...+
T Consensus      1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~---~~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R 1251 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD---LVHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYR 1251 (1387)
T ss_pred             CeEEecCCeeEEEEEecccceeEeecccCCCccceeeccc---ccCCceEEEeecCCceEEeecccCCc---cccceeec
Confidence            5566666589999999  333333332 445567777643   24589999999999999999987542   12567778


Q ss_pred             CCCCc--eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784          256 GHEKP--IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR  333 (501)
Q Consensus       256 ~~~~~--v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  333 (501)
                      .|+..  |..+.+.+.+-..|++|+.||.|++||++.........                                   
T Consensus      1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~----------------------------------- 1296 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT----------------------------------- 1296 (1387)
T ss_pred             ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-----------------------------------
Confidence            88887  99999987555579999999999999999752111000                                   


Q ss_pred             CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-eEEEEecC
Q 010784          334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-KIVTGGRD  411 (501)
Q Consensus       334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-~~l~~gs~  411 (501)
                          +..-....+..+++..+++...+|+|+...|+||++...+... .+.-..+ ....+.+.|++|+|. -++|+|+.
T Consensus      1297 ----iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~-~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~ 1371 (1387)
T KOG1517|consen 1297 ----IVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNI-IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA 1371 (1387)
T ss_pred             ----eeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcc-cccCcccccCcCCCcceeeecchhHhhhhccC
Confidence                0000001235899999999999999999449999987543210 0000111 112456899999999 88888899


Q ss_pred             CCcEEEEeCCCcc
Q 010784          412 DLRINIWETDTGM  424 (501)
Q Consensus       412 dg~i~iwd~~~~~  424 (501)
                      |..|.||.....+
T Consensus      1372 Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1372 DSTVSIYSCEKPR 1384 (1387)
T ss_pred             CceEEEeecCCcC
Confidence            9999999876543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=4.6e-16  Score=135.82  Aligned_cols=203  Identities=17%  Similarity=0.173  Sum_probs=150.1

Q ss_pred             EEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECC
Q 010784          210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS  289 (501)
Q Consensus       210 ~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~  289 (501)
                      .+++|+    .+|..+++|+.||++|+|+.....      .+.....|.+.|.++.|+| +++.|++.+.| ..+||+.+
T Consensus       148 k~vaf~----~~gs~latgg~dg~lRv~~~Ps~~------t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~  215 (398)
T KOG0771|consen  148 KVVAFN----GDGSKLATGGTDGTLRVWEWPSML------TILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVN  215 (398)
T ss_pred             eEEEEc----CCCCEeeeccccceEEEEecCcch------hhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEec
Confidence            578885    899999999999999999977765      3667778999999999998 89999999999 89999999


Q ss_pred             CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC---cE--EEEEc
Q 010784          290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK---SL--ICTGG  364 (501)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~---~~--l~~~~  364 (501)
                      ++..+.....                                          .........+.|+.++   .+  ++...
T Consensus       216 ~g~~~a~~t~------------------------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~  253 (398)
T KOG0771|consen  216 TGAALARKTP------------------------------------------FSKDEMFSSCRFSVDNAQETLRLAASQF  253 (398)
T ss_pred             cCchhhhcCC------------------------------------------cccchhhhhceecccCCCceEEEEEecC
Confidence            9844332110                                          0012234456666665   22  22333


Q ss_pred             CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784          365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG  442 (501)
Q Consensus       365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  442 (501)
                      ..+ |+.||+...+.- ..-...+...-...|++++++++ ++++.|+.||.|-|++..+.+.++-++    ..|...|+
T Consensus       254 ~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk----~aH~~~VT  328 (398)
T KOG0771|consen  254 PGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK----EAHLGFVT  328 (398)
T ss_pred             CCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh----hhheeeee
Confidence            444 888777654321 00011222222457999999999 999999999999999999988887775    67889999


Q ss_pred             eeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          443 CSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       443 ~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      .+.|+||.+++++.+  .+..+.+..+.-+.
T Consensus       329 ~ltF~Pdsr~~~svS--s~~~~~v~~l~vd~  357 (398)
T KOG0771|consen  329 GLTFSPDSRYLASVS--SDNEAAVTKLAVDK  357 (398)
T ss_pred             eEEEcCCcCcccccc--cCCceeEEEEeecc
Confidence            999999999999988  44777777766533

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.70  E-value=2.3e-16  Score=136.79  Aligned_cols=214  Identities=17%  Similarity=0.230  Sum_probs=157.3

Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc---cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCe
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG---QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSK  282 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~  282 (501)
                      ..+|..+.|.   ....+.++||+.|..|++|.++......   .......+..|...|+++.|+| ++.+|++|+.+|.
T Consensus        13 ~~pv~s~dfq---~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~   88 (434)
T KOG1009|consen   13 HEPVYSVDFQ---KNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGE   88 (434)
T ss_pred             CCceEEEEec---cCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCce
Confidence            4578888886   2333499999999999999998765433   5566778889999999999998 8899999999999


Q ss_pred             EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEE
Q 010784          283 VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICT  362 (501)
Q Consensus       283 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  362 (501)
                      |.+|-...-...   .+        .. ....                +-+.....+.+.+|...|+.++|+|++.++++
T Consensus        89 v~lWk~~~~~~~---~~--------d~-e~~~----------------~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s  140 (434)
T KOG1009|consen   89 VFLWKQGDVRIF---DA--------DT-EADL----------------NKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS  140 (434)
T ss_pred             EEEEEecCcCCc---cc--------cc-hhhh----------------CccceEEEEEecccccchhhhhccCCCceeee
Confidence            999976641110   00        00 0000                00112234567789999999999999999999


Q ss_pred             EcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccc-----c---C
Q 010784          363 GGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLL-----C---N  432 (501)
Q Consensus       363 ~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~-----~---~  432 (501)
                      ++-|+ +++||+..++..      ..+..|...|..++|+|. +++++-+.|...+.+.+...+.+....     .   +
T Consensus       141 ~s~dns~~l~Dv~~G~l~------~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~  214 (434)
T KOG1009|consen  141 GSVDNSVRLWDVHAGQLL------AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFN  214 (434)
T ss_pred             eeccceEEEEEeccceeE------eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccC
Confidence            99988 999999998765      888999999999999999 999988889878887776544333221     0   0


Q ss_pred             CCC------CC----CcceeeeEeeccccEEEEee
Q 010784          433 YPE------EA----DISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       433 ~~~------~~----~~~v~~~~~s~~g~~l~s~~  457 (501)
                      ...      .|    ..-...++|+|||.+|++..
T Consensus       215 ~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  215 EREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             CCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            000      01    11234578999999999854

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=5.9e-15  Score=133.65  Aligned_cols=285  Identities=14%  Similarity=0.126  Sum_probs=194.8

Q ss_pred             cCCCCceEEeeCCcEEE-eecCCeeeEEEEecccccccceecccCCc--ceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          109 VAKPHDHILLDNNDIFS-TQGSSIQNIKIDNFLSESYYRATLSDHKA--RITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~-~~g~~d~~i~vw~~~~~~~~~~~~~~h~~--~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      ++..-+.|.++|||.|+ |+|.+...|++||+..   +.-.+..|.+  .|.-.-.+.             |-..++--.
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan---LSLKFERhlDae~V~feiLsD-------------D~SK~v~L~  113 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN---LSLKFERHLDAEVVDFEILSD-------------DYSKSVFLQ  113 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEccc---ceeeeeecccccceeEEEecc-------------chhhheEee
Confidence            34446889999999987 6888999999999873   3334455543  233333333             444555556


Q ss_pred             CCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784          186 CDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS  265 (501)
Q Consensus       186 ~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  265 (501)
                      .|.+|.+-..+..-..++. ...-..|+++   .+.-.+++ ++....|.-++++.|.      .+..+....+.++++.
T Consensus       114 ~DR~IefHak~G~hy~~RI-P~~GRDm~y~---~~scDly~-~gsg~evYRlNLEqGr------fL~P~~~~~~~lN~v~  182 (703)
T KOG2321|consen  114 NDRTIEFHAKYGRHYRTRI-PKFGRDMKYH---KPSCDLYL-VGSGSEVYRLNLEQGR------FLNPFETDSGELNVVS  182 (703)
T ss_pred             cCceeeehhhcCeeeeeec-CcCCcccccc---CCCccEEE-eecCcceEEEEccccc------cccccccccccceeee
Confidence            6888877652222222211 1223455554   23334444 4445678889999887      4777887889999999


Q ss_pred             EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC
Q 010784          266 VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK  345 (501)
Q Consensus       266 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  345 (501)
                      +++ -..+|++|+.+|.|..||.++...+.........  ..                               .......
T Consensus       183 in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v--~s-------------------------------~pg~~~~  228 (703)
T KOG2321|consen  183 INE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV--NS-------------------------------HPGGDAA  228 (703)
T ss_pred             ecC-ccceEEecccCceEEEecchhhhhheeeeccccc--CC-------------------------------Ccccccc
Confidence            997 5668999999999999999987654332211110  00                               0000113


Q ss_pred             CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEEEEeCC
Q 010784          346 PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~  421 (501)
                      ..|+++.|+.+|-.+++|+..+ +.|||+++.+.+     +..-.+..-+|..+.|.+.   ..+++. ....++|||-.
T Consensus       229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-----~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~  302 (703)
T KOG2321|consen  229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-----LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDEC  302 (703)
T ss_pred             CcceEEEecCCceeEEeeccCCcEEEEEcccCCce-----eecccCCccceeeecccccCCCceEEec-chHHhhhcccc
Confidence            4499999999999999999888 999999998754     2233334568899999765   666664 77789999999


Q ss_pred             CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      +|+....+.      ....++.+|+-|++.++++|-  +++.+..|=
T Consensus       303 ~Gk~~asiE------pt~~lND~C~~p~sGm~f~An--e~~~m~~yy  341 (703)
T KOG2321|consen  303 TGKPMASIE------PTSDLNDFCFVPGSGMFFTAN--ESSKMHTYY  341 (703)
T ss_pred             cCCceeecc------ccCCcCceeeecCCceEEEec--CCCcceeEE
Confidence            999998883      355699999999999999997  556555443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.69  E-value=5.7e-16  Score=141.68  Aligned_cols=234  Identities=18%  Similarity=0.191  Sum_probs=163.2

Q ss_pred             CcEEEe--ecCCeeeEEEEecccccccce-ecc--cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-
Q 010784          121 NDIFST--QGSSIQNIKIDNFLSESYYRA-TLS--DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-  194 (501)
Q Consensus       121 ~~~~~~--~g~~d~~i~vw~~~~~~~~~~-~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-  194 (501)
                      +..++|  -.+.-|.|-|+++...+++-. .+.  -....|+.++|.|.            |...|+.++.||.|++|. 
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF------------D~~rLAVa~ddg~i~lWr~  657 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF------------DDERLAVATDDGQINLWRL  657 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCC------------ChHHeeecccCceEEEEEe
Confidence            344444  445578999999875433222 121  13457999999997            889999999999999995 


Q ss_pred             --------CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784          195 --------KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       195 --------~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                              .......+.+|...|+++.|+|   -..+.|++++.|.+|++||+.++.      ....+.+|++.|..++|
T Consensus       658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHP---LAadvLa~asyd~Ti~lWDl~~~~------~~~~l~gHtdqIf~~AW  728 (1012)
T KOG1445|consen  658 TANGLPENEMTPEKILTIHGEKITSLRFHP---LAADVLAVASYDSTIELWDLANAK------LYSRLVGHTDQIFGIAW  728 (1012)
T ss_pred             ccCCCCcccCCcceeeecccceEEEEEecc---hhhhHhhhhhccceeeeeehhhhh------hhheeccCcCceeEEEE
Confidence                    2234566789999999999995   556799999999999999999987      47788999999999999


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC-C
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC-K  345 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~  345 (501)
                      +| +++.+++.+.||+|++|+.+.++...                                           +.-.+. .
T Consensus       729 Sp-dGr~~AtVcKDg~~rVy~Prs~e~pv-------------------------------------------~Eg~gpvg  764 (1012)
T KOG1445|consen  729 SP-DGRRIATVCKDGTLRVYEPRSREQPV-------------------------------------------YEGKGPVG  764 (1012)
T ss_pred             CC-CCcceeeeecCceEEEeCCCCCCCcc-------------------------------------------ccCCCCcc
Confidence            98 89999999999999999998764311                                           000000 1


Q ss_pred             CcEEEEEEcCCCcEEEEEcCC----c-EEEEecCCCCCCCCCCCcccccCccc-CeEEEEecCC--eEEEEecCCCcEEE
Q 010784          346 PILHSFSIMPSKSLICTGGIG----K-AMTWDIRRSQDAVKPQPMAELDGHVG-SVTQLHMDPY--KIVTGGRDDLRINI  417 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~~d----~-i~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~--~~l~~gs~dg~i~i  417 (501)
                      ..--.|.|.-+|+++++.+-|    + |.+||..+-..    .++.+..-... .+.--.++++  .++++|-.|..|.+
T Consensus       765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~----~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~  840 (1012)
T KOG1445|consen  765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL----RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNM  840 (1012)
T ss_pred             CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC----CcceeeeecccCccccccccCCCceEEEecCCCceEEE
Confidence            122345566688887776633    3 77787765331    12222111000 0111123445  78888889999999


Q ss_pred             EeCCCc
Q 010784          418 WETDTG  423 (501)
Q Consensus       418 wd~~~~  423 (501)
                      |.+-..
T Consensus       841 yEv~~e  846 (1012)
T KOG1445|consen  841 YEVIYE  846 (1012)
T ss_pred             EEecCC
Confidence            998643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.69  E-value=7.7e-16  Score=126.01  Aligned_cols=252  Identities=17%  Similarity=0.194  Sum_probs=165.3

Q ss_pred             CCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCc--CcEEEEeeCC
Q 010784          110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT--ENVLVTSSCD  187 (501)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d  187 (501)
                      ...|+.+..-|+ ..+.+-+.|..+.+|++.-+    .....|.=.++++.|++..      ....+.  ...++.-+..
T Consensus        56 ~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s----~~i~i~Si~~nslgFCrfS------l~~~~k~~eqll~yp~rg  124 (323)
T KOG0322|consen   56 RLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS----AFISIHSIVVNSLGFCRFS------LVKKPKNSEQLLEYPSRG  124 (323)
T ss_pred             cceeeceeecCC-cchhhcCCCceEEEEEccCc----ceEEEeeeeccccccccce------eccCCCcchhheecCCcc
Confidence            344777777776 55667778999999998753    2334566678888887621      000011  1112211110


Q ss_pred             C-ceEEecCCceeee------ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc----cccccceeeccC
Q 010784          188 H-SIRLWWKGSCQRC------FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK----RGQQALKATLYG  256 (501)
Q Consensus       188 g-~i~vwd~~~~~~~------~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~~~~~~  256 (501)
                      - .+.+-|-+...+.      -.+..+.+.|..+- ......-++++|.++|.+.+||+.++..    +...+.......
T Consensus       125 sde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~-~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as  203 (323)
T KOG0322|consen  125 SDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD-HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS  203 (323)
T ss_pred             cchhhhhccCccceeEccCchhccccCceeeeecc-ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh
Confidence            0 0122221111111      11345667777652 2223344677889999999999998743    112234555677


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      |..+|.++.+.+ ....=++|+.+..+..|++......                                        .+
T Consensus       204 h~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gs----------------------------------------lq  242 (323)
T KOG0322|consen  204 HKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGS----------------------------------------LQ  242 (323)
T ss_pred             ccCcceeeeech-hhcCCcCCCccccceeeeeccccCc----------------------------------------cc
Confidence            999999999986 3344567788888888987643110                                        00


Q ss_pred             eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCc
Q 010784          337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLR  414 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~  414 (501)
                      ...........|..+.+-||++.+|+++.|+ ||+|..++...      +..++.|...|++++|+|+ .++|++|.|++
T Consensus       243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p------LAVLkyHsagvn~vAfspd~~lmAaaskD~r  316 (323)
T KOG0322|consen  243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP------LAVLKYHSAGVNAVAFSPDCELMAAASKDAR  316 (323)
T ss_pred             ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc------hhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence            1111222345678899999999999999888 99999999654      5999999999999999999 99999999999


Q ss_pred             EEEEeC
Q 010784          415 INIWET  420 (501)
Q Consensus       415 i~iwd~  420 (501)
                      |.+|++
T Consensus       317 ISLWkL  322 (323)
T KOG0322|consen  317 ISLWKL  322 (323)
T ss_pred             EEeeec
Confidence            999986

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=3.3e-15  Score=142.84  Aligned_cols=232  Identities=11%  Similarity=0.063  Sum_probs=157.2

Q ss_pred             CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC---CceEEec--CCc--eeee
Q 010784          129 SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD---HSIRLWW--KGS--CQRC  201 (501)
Q Consensus       129 ~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd--~~~--~~~~  201 (501)
                      ..+..+.+||....  ..+.+..|...+...+|+|             +|+.|+.++.+   ..|++||  ++.  .+..
T Consensus       181 ~~~~~i~i~d~dg~--~~~~lt~~~~~v~~p~wSP-------------DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~  245 (429)
T PRK01742        181 SQPYEVRVADYDGF--NQFIVNRSSQPLMSPAWSP-------------DGSKLAYVSFENKKSQLVVHDLRSGARKVVAS  245 (429)
T ss_pred             CceEEEEEECCCCC--CceEeccCCCccccceEcC-------------CCCEEEEEEecCCCcEEEEEeCCCCceEEEec
Confidence            34689999998743  3566778888999999999             88989887654   3699999  332  2333


Q ss_pred             ccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEE--eccCCCccccccceeeccCCCCceeEEEEeecCCeEEE-EE
Q 010784          202 FKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLW--SLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV-TI  277 (501)
Q Consensus       202 ~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-s~  277 (501)
                      +.+|   ...++|+    |+|+.|+.++ .+|.+.||  |+.++.       ...+..+...+....|+| ++..|+ ++
T Consensus       246 ~~g~---~~~~~wS----PDG~~La~~~~~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~wSp-DG~~i~f~s  310 (429)
T PRK01742        246 FRGH---NGAPAFS----PDGSRLAFASSKDGVLNIYVMGANGGT-------PSQLTSGAGNNTEPSWSP-DGQSILFTS  310 (429)
T ss_pred             CCCc---cCceeEC----CCCCEEEEEEecCCcEEEEEEECCCCC-------eEeeccCCCCcCCEEECC-CCCEEEEEE
Confidence            4443   3467887    8998887764 68877666  444443       345556677788899998 555554 44


Q ss_pred             eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784          278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK  357 (501)
Q Consensus       278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~  357 (501)
                      ..+|...+|++......                                          . ..+ .+..  ....|+|+|
T Consensus       311 ~~~g~~~I~~~~~~~~~------------------------------------------~-~~l-~~~~--~~~~~SpDG  344 (429)
T PRK01742        311 DRSGSPQVYRMSASGGG------------------------------------------A-SLV-GGRG--YSAQISADG  344 (429)
T ss_pred             CCCCCceEEEEECCCCC------------------------------------------e-EEe-cCCC--CCccCCCCC
Confidence            46788888876532110                                          0 001 1222  356799999


Q ss_pred             cEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC--CcccccccccCCC
Q 010784          358 SLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD--TGMLANSLLCNYP  434 (501)
Q Consensus       358 ~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~--~~~~~~~~~~~~~  434 (501)
                      +.++..+.+.+.+||+.+++..      .....+  ....+.|+|+ ++++.++.++.+.+|++.  +|+.+..+     
T Consensus       345 ~~ia~~~~~~i~~~Dl~~g~~~------~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l-----  411 (429)
T PRK01742        345 KTLVMINGDNVVKQDLTSGSTE------VLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL-----  411 (429)
T ss_pred             CEEEEEcCCCEEEEECCCCCeE------EecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-----
Confidence            9998888777777999886532      111111  2346789999 778877789988888763  57778888     


Q ss_pred             CCCCcceeeeEeecc
Q 010784          435 EEADISTGCSAMAVS  449 (501)
Q Consensus       435 ~~~~~~v~~~~~s~~  449 (501)
                      ..|.+.+...+|+|-
T Consensus       412 ~~~~g~~~~p~wsp~  426 (429)
T PRK01742        412 PGSDGQVKFPAWSPY  426 (429)
T ss_pred             cCCCCCCCCcccCCC
Confidence            345567788899874

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=6.9e-14  Score=117.91  Aligned_cols=239  Identities=14%  Similarity=0.168  Sum_probs=169.5

Q ss_pred             ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE-EEeCC------
Q 010784          208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV-TISKD------  280 (501)
Q Consensus       208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-s~s~d------  280 (501)
                      ...+++|.    .|...++.|..+ -.+||+.+.-++      ......+.+.+.-+.... ..++++ .|+.+      
T Consensus         7 ~~lsvs~N----QD~ScFava~~~-Gfriyn~~P~ke------~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~p   74 (346)
T KOG2111|consen    7 KTLSVSFN----QDHSCFAVATDT-GFRIYNCDPFKE------SASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPP   74 (346)
T ss_pred             ceeEEEEc----cCCceEEEEecC-ceEEEecCchhh------hhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCC
Confidence            44558884    777777777665 479999886442      111111222222222221 223443 34333      


Q ss_pred             CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC-CCceEeeeccC--CCcEEEEEEcCCC
Q 010784          281 SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR-TMQKVMTPAIC--KPILHSFSIMPSK  357 (501)
Q Consensus       281 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~--~~~v~~v~~~~~~  357 (501)
                      ..|.|||-...      .+...+.....+.++....+.++++..+.|.+|... +.+.++.+...  ...+.+++-+.+.
T Consensus        75 NkviIWDD~k~------~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k  148 (346)
T KOG2111|consen   75 NKVIIWDDLKE------RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK  148 (346)
T ss_pred             ceEEEEecccC------cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence            46999994444      444555778888999999999999999999999987 55666555532  2334444444456


Q ss_pred             cEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCc-EEEEeCCCcccccccccCC
Q 010784          358 SLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLR-INIWETDTGMLANSLLCNY  433 (501)
Q Consensus       358 ~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~-i~iwd~~~~~~~~~~~~~~  433 (501)
                      .+||.-+ .-+ |.|-|+...+.    .+-..+..|...|.+++.+-+ .++|++|..|+ |||||..+|+++..+..+.
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~  224 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV  224 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence            6777666 344 99999987653    123677899999999999999 99999999997 7999999999999997543


Q ss_pred             CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          434 PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       434 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                         ....|.+++|||+..+|+++|  +.|+++++.+....
T Consensus       225 ---d~A~iy~iaFSp~~s~LavsS--dKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  225 ---DRADIYCIAFSPNSSWLAVSS--DKGTLHIFSLRDTE  259 (346)
T ss_pred             ---chheEEEEEeCCCccEEEEEc--CCCeEEEEEeecCC
Confidence               246799999999999999999  88999999987644

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=1.4e-14  Score=125.39  Aligned_cols=268  Identities=16%  Similarity=0.179  Sum_probs=190.6

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee------eeccCCCCceEEEEeeecCCCCC
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ------RCFKGHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~------~~~~~h~~~v~~l~~s~~~~~~~  222 (501)
                      .-...|..++|.-++           +.+.+...+.|..+....  ...+.      ......+++|..++.      ..
T Consensus        53 ~~~~ris~l~~~~d~-----------~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~------~d  115 (412)
T KOG3881|consen   53 DELDRISSLLFGVDG-----------ETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL------AD  115 (412)
T ss_pred             chhhhhhhheeecCC-----------ceeEeeccccCcccccccccCCccccccccccccccccccccchhh------cC
Confidence            345678888887643           456666666777777665  22222      233456778888875      34


Q ss_pred             CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC--CeEEEEECCCCccccceecc
Q 010784          223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD--SKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~  300 (501)
                      ..|++|-.+|.+.+|....+...  ......+..+ ..+..+.-++....++++|+..  ..+.+||+++.+.+.+..++
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~h--ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv  192 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLH--SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV  192 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccc--cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence            57788889999999999855421  0012333333 4566777777677888889999  89999999998766554444


Q ss_pred             cce----ecCCCceeeecCCC---eEEEEeC--CcEEEEEcCCCce-EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EE
Q 010784          301 GMT----SVPGVPVDMKCHES---MLYIASG--SSVVTIDLRTMQK-VMTPAICKPILHSFSIMPSKSLICTGGIGK-AM  369 (501)
Q Consensus       301 ~~~----~~~~~~~~~~~~~~---~~~~~~~--~~i~~~d~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~  369 (501)
                      ...    ..+..+..+.|-+.   ..+++..  +++++||.+.++. +..+.-.+.+++++...|+++++++|..-+ +.
T Consensus       193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~  272 (412)
T KOG3881|consen  193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA  272 (412)
T ss_pred             CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence            332    23334444444433   3444433  4899999997754 567777789999999999999999999888 99


Q ss_pred             EEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784          370 TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       370 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                      .||++.++..     ...+++..+.|.+|..+|. +++++++-|..|+|+|+.+.+++.....      .+.++.+.+.+
T Consensus       273 ~FD~r~~kl~-----g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv------Ks~lt~il~~~  341 (412)
T KOG3881|consen  273 KFDLRGGKLL-----GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV------KSRLTFILLRD  341 (412)
T ss_pred             eecccCceee-----ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh------hccccEEEecC
Confidence            9999998755     3458888999999999999 9999999999999999999777766532      34566666655


Q ss_pred             c
Q 010784          449 S  449 (501)
Q Consensus       449 ~  449 (501)
                      +
T Consensus       342 ~  342 (412)
T KOG3881|consen  342 D  342 (412)
T ss_pred             C
Confidence            4

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=3.2e-15  Score=130.62  Aligned_cols=202  Identities=14%  Similarity=0.154  Sum_probs=147.6

Q ss_pred             ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEe
Q 010784          114 DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW  193 (501)
Q Consensus       114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  193 (501)
                      -+++++.+|..+++|+.||.++||++.+ ...+.....|...|.+++|+|             ||++|++-+.| ..+||
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~~eV~DL~FS~-------------dgk~lasig~d-~~~VW  212 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIAHHAEVKDLDFSP-------------DGKFLASIGAD-SARVW  212 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHhhcCccccceeCC-------------CCcEEEEecCC-ceEEE
Confidence            6899999999999999999999999877 477777889999999999999             89999999999 99999


Q ss_pred             c--CCceeeecc--CCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784          194 W--KGSCQRCFK--GHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG  268 (501)
Q Consensus       194 d--~~~~~~~~~--~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  268 (501)
                      +  ++..+....  ........+.|+..+..+.-++ +....-+.|+.|++.........+..+.+ .....|.+++++.
T Consensus       213 ~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~  291 (398)
T KOG0771|consen  213 SVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSD  291 (398)
T ss_pred             EeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcC
Confidence            8  665554443  2334456677762111111122 23334566777776543321111112222 2344689999996


Q ss_pred             cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784          269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL  348 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v  348 (501)
                       ++++++.|+.||.|.+++..+.+...                                           ..-+.|...|
T Consensus       292 -dGkf~AlGT~dGsVai~~~~~lq~~~-------------------------------------------~vk~aH~~~V  327 (398)
T KOG0771|consen  292 -DGKFLALGTMDGSVAIYDAKSLQRLQ-------------------------------------------YVKEAHLGFV  327 (398)
T ss_pred             -CCcEEEEeccCCcEEEEEeceeeeeE-------------------------------------------eehhhheeee
Confidence             89999999999999999988764322                                           2334688999


Q ss_pred             EEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784          349 HSFSIMPSKSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       349 ~~v~~~~~~~~l~~~~~d~-i~iwd~~~  375 (501)
                      +.+.|+|+.+++++.+.+. +.+..+.-
T Consensus       328 T~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  328 TGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999999988777 88877665

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=8.5e-13  Score=111.44  Aligned_cols=231  Identities=12%  Similarity=0.117  Sum_probs=153.5

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc--ceeEEEeeccCcCcccccCCCCcCcEEE-EeeCC--
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA--RITCMRLFPLHETSLFRSEPQRTENVLV-TSSCD--  187 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~--~V~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d--  187 (501)
                      .-+++|+.|...+++|..+| .+||+.+.- +.......+.+  .+..+-|-               .++|+ .|+.+  
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~-ke~~~r~~~~~G~~~veMLfR---------------~N~laLVGGg~~p   70 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPF-KESASRQFIDGGFKIVEMLFR---------------SNYLALVGGGSRP   70 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCch-hhhhhhccccCchhhhhHhhh---------------hceEEEecCCCCC
Confidence            34489999999999887655 788987752 22222222222  23333332               34444 34333  


Q ss_pred             ----CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC--C
Q 010784          188 ----HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE--K  259 (501)
Q Consensus       188 ----g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~  259 (501)
                          ..|.|||  ..+++.++. ...+|.++.+.      ...+++.- .+.|.||......+     .+..+....  .
T Consensus        71 ky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~------r~riVvvl-~~~I~VytF~~n~k-----~l~~~et~~NPk  137 (346)
T KOG2111|consen   71 KYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLR------RDRIVVVL-ENKIYVYTFPDNPK-----LLHVIETRSNPK  137 (346)
T ss_pred             CCCCceEEEEecccCcEEEEEE-eccceeeEEEc------CCeEEEEe-cCeEEEEEcCCChh-----heeeeecccCCC
Confidence                4699999  667777775 57899999984      34555554 56899999986543     344333222  2


Q ss_pred             ceeEEEEeecC-CeEEEE-EeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784          260 PIKLMSVAGHK-SFLLVT-ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       260 ~v~~l~~~~~~-~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  337 (501)
                      ...  +..|.. ..+|+. |-.-|.|.|-|+...+.                                          ..
T Consensus       138 GlC--~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~------------------------------------------~~  173 (346)
T KOG2111|consen  138 GLC--SLCPTSNKSLLAFPGFKTGQVQIVDLASTKP------------------------------------------NA  173 (346)
T ss_pred             ceE--eecCCCCceEEEcCCCccceEEEEEhhhcCc------------------------------------------CC
Confidence            233  233322 223333 33457777777765422                                          01


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccC--cccCeEEEEecCC-eEEEEecCC
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDG--HVGSVTQLHMDPY-KIVTGGRDD  412 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~-~~l~~gs~d  412 (501)
                      ...+..|...|.+++++-+|.++|++|..+  |||||..+++.+      .++..  ....|++++|+|+ .+++++|..
T Consensus       174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l------~E~RRG~d~A~iy~iaFSp~~s~LavsSdK  247 (346)
T KOG2111|consen  174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL------QELRRGVDRADIYCIAFSPNSSWLAVSSDK  247 (346)
T ss_pred             ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe------eeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence            245678999999999999999999999655  999999998765      55542  2457999999999 999999999


Q ss_pred             CcEEEEeCCCc
Q 010784          413 LRINIWETDTG  423 (501)
Q Consensus       413 g~i~iwd~~~~  423 (501)
                      |+++||.++..
T Consensus       248 gTlHiF~l~~~  258 (346)
T KOG2111|consen  248 GTLHIFSLRDT  258 (346)
T ss_pred             CeEEEEEeecC
Confidence            99999998753

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2.7e-13  Score=116.31  Aligned_cols=284  Identities=15%  Similarity=0.178  Sum_probs=182.2

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc-CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD-HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      +.-++|++--..+|++..|-+|++|+-..  .....++. -...|+|++|-|.            .+..|+.|+..| |.
T Consensus       101 lr~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPl------------saselavgCr~g-Ic  165 (445)
T KOG2139|consen  101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPL------------SASELAVGCRAG-IC  165 (445)
T ss_pred             eeeEeechhhhhhhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccC------------Ccceeeeeecce-eE
Confidence            56678888777788999999999999775  44444443 3456999999995            456777777655 89


Q ss_pred             Eec---C---Cce----------eeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeec
Q 010784          192 LWW---K---GSC----------QRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       192 vwd---~---~~~----------~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      +|.   +   +..          +....+| .+|++|.|.    ++|..+++++. |..|.|||.+++..      +...
T Consensus       166 iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn----~dgt~l~tAS~gsssi~iWdpdtg~~------~pL~  234 (445)
T KOG2139|consen  166 IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWN----EDGTILVTASFGSSSIMIWDPDTGQK------IPLI  234 (445)
T ss_pred             EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEc----CCCCEEeecccCcceEEEEcCCCCCc------cccc
Confidence            995   1   111          1122345 689999995    89999998875 56899999999874      2222


Q ss_pred             cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                      ....+.+.-+.|+| ++.+|++++-|+..++|+........                                       
T Consensus       235 ~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~e---------------------------------------  274 (445)
T KOG2139|consen  235 PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKE---------------------------------------  274 (445)
T ss_pred             ccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceec---------------------------------------
Confidence            34456788899999 78899999999999999655431100                                       


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCC---------CCcccc------cC---cccCeE
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKP---------QPMAEL------DG---HVGSVT  396 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~---------~~~~~~------~~---h~~~v~  396 (501)
                           ......+.|...+|+|+|.+|+-...+.-++|.+...+.....         .++..+      .+   -.+.+.
T Consensus       275 -----rw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq  349 (445)
T KOG2139|consen  275 -----RWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQ  349 (445)
T ss_pred             -----ceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccc
Confidence                 0111245788888888888877776666555555432221000         011111      11   146789


Q ss_pred             EEEecCC-eEEEEecCCC--------cEEEEeCCCcccccccccCCCCCCCcceeeeEeec---cccEEEEeecCCCceE
Q 010784          397 QLHMDPY-KIVTGGRDDL--------RINIWETDTGMLANSLLCNYPEEADISTGCSAMAV---SGCRIVTASYGEPGLL  464 (501)
Q Consensus       397 ~l~~~~~-~~l~~gs~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~s~~~d~~g~i  464 (501)
                      +++|+|. .++|..-..+        .|.+||.+..-...-..++...  ...-..++|+|   +|.+|..+-  ..|.+
T Consensus       350 ~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~--ge~P~~IsF~pl~n~g~lLsiaW--sTGri  425 (445)
T KOG2139|consen  350 CLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIG--GEYPAYISFGPLKNEGRLLSIAW--STGRI  425 (445)
T ss_pred             eeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccccc--CCCCceEEeeecccCCcEEEEEe--ccCce
Confidence            9999999 6666642322        3667776643332222222211  11234566766   567777776  66888


Q ss_pred             EEeeccC
Q 010784          465 QFRDFSN  471 (501)
Q Consensus       465 ~~w~~~~  471 (501)
                      .-|.+.-
T Consensus       426 q~ypl~f  432 (445)
T KOG2139|consen  426 QRYPLTF  432 (445)
T ss_pred             EeeeeEE
Confidence            8887653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.63  E-value=1.6e-14  Score=129.80  Aligned_cols=197  Identities=11%  Similarity=0.096  Sum_probs=139.6

Q ss_pred             CCCCEEEEeeCCCcEEEEeccCCCccccccceeecc--CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784          220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY--GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  297 (501)
                      +.+--+..|-.-|.|.+.|....+.    ..+....  -....|+++.|.|.+...++.+-.+|.+++||..-.-..   
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~----sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~---  255 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEV----SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA---  255 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHH----HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC---
Confidence            5666788888889999988766321    0001111  123689999999988889999999999999987322110   


Q ss_pred             ecccceecCCCceeeecCCCeEEEEeCCcEEEEEc-CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784          298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL-RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~  375 (501)
                              ....+..-..++...      |..+.- .+..++..+...++.|+..+|+|||++||+.+.|+ +||||..+
T Consensus       256 --------t~p~~~~~k~~~~f~------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt  321 (636)
T KOG2394|consen  256 --------TAPSYQALKDGDQFA------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT  321 (636)
T ss_pred             --------CCCcccccCCCCeeE------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH
Confidence                    000111111111111      111111 11134444444567899999999999999999999 99999998


Q ss_pred             CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784          376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                      .+.+      ..++..-+...|++|+|| ++|++|++|.-|.||.+...+++..=     .+|.++|..++|.|
T Consensus       322 ~eLl------g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG-----qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  322 QELL------GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG-----QGHKSWVSVVAFDP  384 (636)
T ss_pred             HHHH------HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec-----cccccceeeEeecc
Confidence            6554      555656678999999999 99999999999999999998888777     68999999999984

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.62  E-value=1.4e-13  Score=117.24  Aligned_cols=249  Identities=15%  Similarity=0.254  Sum_probs=179.6

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCceeeec-cCCCCceEEEEeeecC
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCF-KGHNGPVSTLSDKLLG  218 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~~~~-~~h~~~v~~l~~s~~~  218 (501)
                      ..+++.++||.+.|++...-|             -..-+++.+.|.+++||-   .++.-..+ .....+++++.+.   
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~-------------~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~---   77 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIP-------------KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV---   77 (404)
T ss_pred             hhhhhhhcCchhhhhhheecc-------------CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee---
Confidence            456778899999999998888             567899999999999994   33332222 2345678889886   


Q ss_pred             CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784          219 DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC  298 (501)
Q Consensus       219 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  298 (501)
                       .+...|+.|-.+|++.-+.+...-.  +.........|...|..+-|+- ....+++.+.|..+.---.+.+..+... 
T Consensus        78 -~e~~~L~vg~~ngtvtefs~sedfn--km~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y-  152 (404)
T KOG1409|consen   78 -SESRRLYVGQDNGTVTEFALSEDFN--KMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGY-  152 (404)
T ss_pred             -ccceEEEEEEecceEEEEEhhhhhh--hcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccce-
Confidence             7888999999999999887654221  1224566678999999999985 6778889998887655445555433221 


Q ss_pred             cccceecCCCceeeecCCCeEEEEe-CCcEEE--EEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecC
Q 010784          299 CVGMTSVPGVPVDMKCHESMLYIAS-GSSVVT--IDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIR  374 (501)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~--~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~  374 (501)
                           ........+.++-...++.. .+.+..  ........+.++.+|.+.+.+++|.+...++.+|..|. +.+||+-
T Consensus       153 -----~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig  227 (404)
T KOG1409|consen  153 -----NFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG  227 (404)
T ss_pred             -----EeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence                 11112222222222222221 123333  34456677889999999999999999999999999999 9999998


Q ss_pred             CCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784          375 RSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       375 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      -.+-.     ..++.+|...|..+..-+. +.+.+++.||.|.+||...
T Consensus       228 g~~g~-----~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  228 GRKGT-----AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             CCcce-----eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            65432     4778899999999988887 6666667999999999864

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.62  E-value=2.2e-12  Score=119.26  Aligned_cols=313  Identities=13%  Similarity=0.116  Sum_probs=193.0

Q ss_pred             CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce
Q 010784          121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC  198 (501)
Q Consensus       121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~  198 (501)
                      ...++++-..++.+.|.|..+ .+.+..+....+.-..+.|+|             ||+++++++.||.|.++|  +++.
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t-~~~~~~i~~~~~~h~~~~~s~-------------Dgr~~yv~~rdg~vsviD~~~~~~   70 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGAT-NKVVARIPTGGAPHAGLKFSP-------------DGRYLYVANRDGTVSVIDLATGKV   70 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT--------------SSEEEEEETTSEEEEEETTSSSE
T ss_pred             ccEEEEEecCCCEEEEEECCC-CeEEEEEcCCCCceeEEEecC-------------CCCEEEEEcCCCeEEEEECCcccE
Confidence            345556777789999999998 478888876655545577888             899999999999999999  7778


Q ss_pred             eeeccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCCccccccceeeccC-------CCCceeEEEEeecC
Q 010784          199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSGKRGQQALKATLYG-------HEKPIKLMSVAGHK  270 (501)
Q Consensus       199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~  270 (501)
                      +.+++... .-.+++++    ++|++++++. .++.+.++|..+.+.      +..+..       ....+..|..++..
T Consensus        71 v~~i~~G~-~~~~i~~s----~DG~~~~v~n~~~~~v~v~D~~tle~------v~~I~~~~~~~~~~~~Rv~aIv~s~~~  139 (369)
T PF02239_consen   71 VATIKVGG-NPRGIAVS----PDGKYVYVANYEPGTVSVIDAETLEP------VKTIPTGGMPVDGPESRVAAIVASPGR  139 (369)
T ss_dssp             EEEEE-SS-EEEEEEE------TTTEEEEEEEETTEEEEEETTT--E------EEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred             EEEEecCC-CcceEEEc----CCCCEEEEEecCCCceeEeccccccc------eeecccccccccccCCCceeEEecCCC
Confidence            88887544 45788987    8999988775 689999999998763      444432       34467777777744


Q ss_pred             CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe--EEEEe--CCcEEEEEcCCCceEeeecc---
Q 010784          271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIAS--GSSVVTIDLRTMQKVMTPAI---  343 (501)
Q Consensus       271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~i~~~d~~~~~~~~~~~~---  343 (501)
                      ..++++--..+.|.+.|....+...    .........+....++++.  ++++.  .+.+.++|.++++.+..+..   
T Consensus       140 ~~fVv~lkd~~~I~vVdy~d~~~~~----~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~  215 (369)
T PF02239_consen  140 PEFVVNLKDTGEIWVVDYSDPKNLK----VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK  215 (369)
T ss_dssp             SEEEEEETTTTEEEEEETTTSSCEE----EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS
T ss_pred             CEEEEEEccCCeEEEEEeccccccc----eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc
Confidence            4455555555888888887764321    1122344455556666654  33332  24899999999887765432   


Q ss_pred             -CCCcEEEEEEcCC-CcEEEEE----------cCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEe-
Q 010784          344 -CKPILHSFSIMPS-KSLICTG----------GIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGG-  409 (501)
Q Consensus       344 -~~~~v~~v~~~~~-~~~l~~~----------~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~g-  409 (501)
                       |...+..+- +|. |...+++          +.+.+.+||..+.+.      +.++....++ ..+..+|+ +.+... 
T Consensus       216 p~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv------v~~I~~~G~g-lFi~thP~s~~vwvd~  287 (369)
T PF02239_consen  216 PHPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV------VKTIPTQGGG-LFIKTHPDSRYVWVDT  287 (369)
T ss_dssp             BEETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE------EEEEE-SSSS---EE--TT-SEEEEE-
T ss_pred             cccccccccc-CCCcceEEeeccccceecccccCCccccchhhcCeE------EEEEECCCCc-ceeecCCCCccEEeec
Confidence             344444432 332 2222222          233355566666443      4777765555 78888999 555544 


Q ss_pred             ---cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          410 ---RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       410 ---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                         ...+.|.++|.++.+.+.++...    ....+..+.|++||+.+..+..+.++.|.++|-.+.+.
T Consensus       288 ~~~~~~~~v~viD~~tl~~~~~i~~~----~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  288 FLNPDADTVQVIDKKTLKVVKTITPG----PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             TT-SSHT-EEEEECCGTEEEE-HHHH----HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             cCCCCCceEEEEECcCcceeEEEecc----CCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence               55689999999999887777421    12348889999999998888887677999999877664

...

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.61  E-value=9.9e-13  Score=122.07  Aligned_cols=255  Identities=12%  Similarity=0.104  Sum_probs=152.2

Q ss_pred             cCCCCceEEeeCCcEEEeec-CCeeeEEEEeccccccc--ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          109 VAKPHDHILLDNNDIFSTQG-SSIQNIKIDNFLSESYY--RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g-~~d~~i~vw~~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      ....+..++++|++++++++ ..++.|.+|++......  ..... ..+....++|+|             +++++++++
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-------------~g~~l~v~~   98 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-------------QGRFLFSAS   98 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-------------CCCEEEEEE
Confidence            34568899999999988655 45888999998632122  22221 233467888988             788777776


Q ss_pred             C-CCceEEec-C--Cc---eeeeccCCCCceEEEEeeecCCCCCCEEEEe-eCCCcEEEEeccCCCcccc-ccceeeccC
Q 010784          186 C-DHSIRLWW-K--GS---CQRCFKGHNGPVSTLSDKLLGDGSGKILASG-GEDATVRLWSLSSSGKRGQ-QALKATLYG  256 (501)
Q Consensus       186 ~-dg~i~vwd-~--~~---~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~-~~~~~~~~~  256 (501)
                      . ++.|.+|+ .  +.   .+..+. +.....+++++    +++++++++ ..++.|.+||+++...... .........
T Consensus        99 ~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~----p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~  173 (330)
T PRK11028         99 YNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANID----PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE  173 (330)
T ss_pred             cCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeC----CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence            4 88999997 2  21   222222 23345677786    788887654 4569999999987432000 000011111


Q ss_pred             CCCceeEEEEeecCCeEEEEEeC-CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISK-DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM  335 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  335 (501)
                       ......+.|+| ++++++++.. ++.|.+|++.......  ......                           .  ..
T Consensus       174 -g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~--~~~~~~---------------------------~--~~  220 (330)
T PRK11028        174 -GAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEI--ECVQTL---------------------------D--MM  220 (330)
T ss_pred             -CCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCE--EEEEEE---------------------------e--cC
Confidence             23456789998 6677766665 8999999997421000  000000                           0  00


Q ss_pred             ceEeeeccCCCcEEEEEEcCCCcEEEEEcC-Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecC
Q 010784          336 QKVMTPAICKPILHSFSIMPSKSLICTGGI-GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRD  411 (501)
Q Consensus       336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~  411 (501)
                        ..... +......+.++|++++++++.. ++ |.+|++......  .+.+..... ......+.++|+  .++++...
T Consensus       221 --p~~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~--~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~  294 (330)
T PRK11028        221 --PADFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV--LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQK  294 (330)
T ss_pred             --CCcCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe--EEEeEEEec-cccCCceEECCCCCEEEEEEcc
Confidence              00000 1223446889999999998864 45 999999654321  111122211 124567899999  55555556


Q ss_pred             CCcEEEEeCC
Q 010784          412 DLRINIWETD  421 (501)
Q Consensus       412 dg~i~iwd~~  421 (501)
                      +++|.+|++.
T Consensus       295 ~~~v~v~~~~  304 (330)
T PRK11028        295 SHHISVYEID  304 (330)
T ss_pred             CCcEEEEEEc
Confidence            8999999874

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.60  E-value=1.6e-13  Score=116.83  Aligned_cols=315  Identities=17%  Similarity=0.163  Sum_probs=203.7

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccc----cceecccCC------------cceeEEEeeccCcCcccccCC
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY----YRATLSDHK------------ARITCMRLFPLHETSLFRSEP  174 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~----~~~~~~~h~------------~~V~~~~~~~~~~~~~~~~~~  174 (501)
                      .-|+++.|+..|.+||+|..+|.|.++.-....+    ....++.|.            ..|+.+.|.+++         
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~---------   96 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG---------   96 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC---------
Confidence            3489999999999999999999999997553222    344455553            578999999855         


Q ss_pred             CCcCcEEEEeeCCCceEEec---CCcee----------------------------------ee-ccCCCCceEEEEeee
Q 010784          175 QRTENVLVTSSCDHSIRLWW---KGSCQ----------------------------------RC-FKGHNGPVSTLSDKL  216 (501)
Q Consensus       175 ~~~~~~l~s~~~dg~i~vwd---~~~~~----------------------------------~~-~~~h~~~v~~l~~s~  216 (501)
                        +...++....|.+|++|.   .+...                                  +. -.+|+-.|+++.+. 
T Consensus        97 --n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-  173 (433)
T KOG1354|consen   97 --NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-  173 (433)
T ss_pred             --CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-
Confidence              667888888899999995   11000                                  01 12578889999985 


Q ss_pred             cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC-----CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC
Q 010784          217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-----EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS  291 (501)
Q Consensus       217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~  291 (501)
                         .+++.++++ .|=.|.+|+++-..+..   -+..++.+     +.-|++..|+|...+.++-.+..|+|++-|++..
T Consensus       174 ---sD~Et~lSA-DdLRINLWnlei~d~sF---nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~  246 (433)
T KOG1354|consen  174 ---SDKETFLSA-DDLRINLWNLEIIDQSF---NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS  246 (433)
T ss_pred             ---CccceEeec-cceeeeeccccccCCce---eEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence               788888876 57789999987644311   12233333     3457888999988889999999999999999954


Q ss_pred             ccccceecccc-----------eecCCCceeeecCCCeEEEEeCC--cEEEEEc-CCCceEeeeccCC------------
Q 010784          292 SAVRSSCCVGM-----------TSVPGVPVDMKCHESMLYIASGS--SVVTIDL-RTMQKVMTPAICK------------  345 (501)
Q Consensus       292 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~-~~~~~~~~~~~~~------------  345 (501)
                      ..-........           ...-..+..+.++.++.++.+.+  ++++||+ ...+++.+++.|.            
T Consensus       247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn  326 (433)
T KOG1354|consen  247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN  326 (433)
T ss_pred             hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence            32111000000           02233455677888888887766  8999999 5556666666653            


Q ss_pred             CcE---EEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccC--eEEEEecCCeEEEEecCCCcEEEEe
Q 010784          346 PIL---HSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGS--VTQLHMDPYKIVTGGRDDLRINIWE  419 (501)
Q Consensus       346 ~~v---~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~l~~gs~dg~i~iwd  419 (501)
                      +.|   ..++|+.++.++++|+... .++++...+...     -.++......  ...+  ..-+.+.+++......+|-
T Consensus       327 D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~-----d~tl~asr~~~~~~~~--~k~~~V~~~g~r~~~~~~v  399 (433)
T KOG1354|consen  327 DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE-----DFTLEASRKNMKPRKV--LKLRLVSSSGKRKRDEISV  399 (433)
T ss_pred             cchhheeEEEEcCCcceEecccccceEEEecCCCCcce-----eecccccccCCccccc--ccceeeecCCCcccccccc
Confidence            222   3578999999999999888 999997665432     1222221111  1111  1114455544444422221


Q ss_pred             CCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784          420 TDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR  467 (501)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w  467 (501)
                      -       .+      ....-+...+|+|..+.||.+..   ..++++
T Consensus       400 d-------~l------df~kkilh~aWhp~en~ia~aat---nnlyif  431 (433)
T KOG1354|consen  400 D-------AL------DFRKKILHTAWHPKENSIAVAAT---NNLYIF  431 (433)
T ss_pred             c-------hh------hhhhHHHhhccCCccceeeeeec---CceEEe
Confidence            0       01      01123455689999999988864   355554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=1.1e-12  Score=119.19  Aligned_cols=312  Identities=13%  Similarity=0.112  Sum_probs=197.7

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe-----eC
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS-----SC  186 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~-----~~  186 (501)
                      +.+..+++++|+++|.+.. ..++|++..++. .+.+..  ...++++.|+|             -+++|.+=     ..
T Consensus        36 ~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~-~~lt~~--~~~~~~L~fSP-------------~g~yL~T~e~~~i~~   98 (566)
T KOG2315|consen   36 PCNVFAYSNNGRLFAYSDN-QVVKVFEIATLK-VVLCVE--LKKTYDLLFSP-------------KGNYLLTWEPWAIYG   98 (566)
T ss_pred             cceeEEEcCCCcEEEEEcC-CeEEEEEccCCc-EEEEec--cceeeeeeecc-------------ccccccccccccccc
Confidence            3577888999999998764 678888887653 222222  22789999999             67777652     11


Q ss_pred             C-----CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          187 D-----HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       187 d-----g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      +     -.+.+|+  ++.....+..-...-.+..|+    .+.. ++.--..+.+.+|++.....       ..-+-|..
T Consensus        99 ~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs----~dEs-l~arlv~nev~f~~~~~f~~-------~~~kl~~~  166 (566)
T KOG2315|consen   99 PKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFS----IDES-LAARLVSNEVQFYDLGSFKT-------IQHKLSVS  166 (566)
T ss_pred             CCCCCCCceeeeeeccceehhheehhhhcCcccccc----cchh-hhhhhhcceEEEEecCCccc-------eeeeeecc
Confidence            2     3366888  422222232211122577775    4443 33333457899999987542       22334677


Q ss_pred             ceeEEEEeecCC-eEEEE-----EeCCCeEEEEECCCCccccceecccceecCCCceeeecCCC---eEEEEeC------
Q 010784          260 PIKLMSVAGHKS-FLLVT-----ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHES---MLYIASG------  324 (501)
Q Consensus       260 ~v~~l~~~~~~~-~~l~s-----~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------  324 (501)
                      .|+.+.++|... ..+++     .+.-+.|++|.......-.......  -....-..+.++..   .+++++.      
T Consensus       167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ks--FFkadkvqm~WN~~gt~LLvLastdVDktn  244 (566)
T KOG2315|consen  167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKS--FFKADKVQMKWNKLGTALLVLASTDVDKTN  244 (566)
T ss_pred             ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcc--ccccceeEEEeccCCceEEEEEEEeecCCC
Confidence            889999998523 33333     3455679999876322111111111  12223334444432   2333321      


Q ss_pred             ------CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCe
Q 010784          325 ------SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSV  395 (501)
Q Consensus       325 ------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v  395 (501)
                            ..+++++++.......+. ..++|.++.|+|+++-+++..  .=. +.|||++-       .++..+.  .++-
T Consensus       245 ~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-------~~v~df~--egpR  314 (566)
T KOG2315|consen  245 ASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-------KPVFDFP--EGPR  314 (566)
T ss_pred             ccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-------CEeEeCC--CCCc
Confidence                  157888887333333333 489999999999997766554  333 99999984       3445554  6788


Q ss_pred             EEEEecCC-eEEEEec---CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC----CCceEEEe
Q 010784          396 TQLHMDPY-KIVTGGR---DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG----EPGLLQFR  467 (501)
Q Consensus       396 ~~l~~~~~-~~l~~gs---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d----~~g~i~~w  467 (501)
                      +++-|+|. ++++-++   .-|.|.|||+.+.+++..+.       ...-+.+.|+|||+++++++..    -|+-++||
T Consensus       315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw  387 (566)
T KOG2315|consen  315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK-------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIW  387 (566)
T ss_pred             cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc-------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence            89999999 5555433   45889999999999998884       3345678999999999999864    46778999


Q ss_pred             eccC
Q 010784          468 DFSN  471 (501)
Q Consensus       468 ~~~~  471 (501)
                      ++.-
T Consensus       388 hytG  391 (566)
T KOG2315|consen  388 HYTG  391 (566)
T ss_pred             EecC
Confidence            9763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.60  E-value=2.4e-13  Score=115.13  Aligned_cols=311  Identities=12%  Similarity=0.063  Sum_probs=196.6

Q ss_pred             eEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec
Q 010784          115 HILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW  194 (501)
Q Consensus       115 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  194 (501)
                      -..|+|+|+++|+.+.- .+.|-|..+ .++.+.+.- -+.|.-+.|..+            ....|.....|+.|.+|+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~t-lq~~qlf~c-ldki~yieW~ad------------s~~ilC~~yk~~~vqvws   77 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSET-LQLHQLFLC-LDKIVYIEWKAD------------SCHILCVAYKDPKVQVWS   77 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccch-hhHHHHHHH-HHHhhheeeecc------------ceeeeeeeeccceEEEEE
Confidence            46799999999999865 667777766 344443322 467888889873            234566677899999999


Q ss_pred             --CCceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC
Q 010784          195 --KGSCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS  271 (501)
Q Consensus       195 --~~~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  271 (501)
                        ...-...+....+++.+++||    |+| .+|.+...+-.|.+|.+.+...       ..+......+..++|+| ++
T Consensus        78 l~Qpew~ckIdeg~agls~~~WS----PdgrhiL~tseF~lriTVWSL~t~~~-------~~~~~pK~~~kg~~f~~-dg  145 (447)
T KOG4497|consen   78 LVQPEWYCKIDEGQAGLSSISWS----PDGRHILLTSEFDLRITVWSLNTQKG-------YLLPHPKTNVKGYAFHP-DG  145 (447)
T ss_pred             eecceeEEEeccCCCcceeeeEC----CCcceEeeeecceeEEEEEEecccee-------EEecccccCceeEEECC-CC
Confidence              334445566778899999998    788 5666777899999999998652       33333344568899997 78


Q ss_pred             eEEEEEeCCCeEEEEECCCCccccceecccce-ecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEE
Q 010784          272 FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHS  350 (501)
Q Consensus       272 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~  350 (501)
                      ++.+.++.....-.+++...+   ........ ...-....+.++|++..++      +||.--.-.+..+. -.-.+..
T Consensus       146 ~f~ai~sRrDCkdyv~i~~c~---~W~ll~~f~~dT~DltgieWsPdg~~la------Vwd~~Leykv~aYe-~~lG~k~  215 (447)
T KOG4497|consen  146 QFCAILSRRDCKDYVQISSCK---AWILLKEFKLDTIDLTGIEWSPDGNWLA------VWDNVLEYKVYAYE-RGLGLKF  215 (447)
T ss_pred             ceeeeeecccHHHHHHHHhhH---HHHHHHhcCCCcccccCceECCCCcEEE------Eecchhhheeeeee-eccceeE
Confidence            777777654221111111110   00111111 1111233455566554444      44432211211111 1356888


Q ss_pred             EEEcCCCcEEEEEcCCc-EEEEecCCCCCCC-------------------------------------------------
Q 010784          351 FSIMPSKSLICTGGIGK-AMTWDIRRSQDAV-------------------------------------------------  380 (501)
Q Consensus       351 v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~-------------------------------------------------  380 (501)
                      ++|+|.+++++.|+.|+ +|+.+--+.+...                                                 
T Consensus       216 v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~  295 (447)
T KOG4497|consen  216 VEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI  295 (447)
T ss_pred             EEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence            99999999999999998 8875532211100                                                 


Q ss_pred             -----------CCCCcccccCcccCeEEEEecCC-eEEEEecCC---CcEEEEeCCCcccccccccCCCCCCCcceeeeE
Q 010784          381 -----------KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD---LRINIWETDTGMLANSLLCNYPEEADISTGCSA  445 (501)
Q Consensus       381 -----------~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  445 (501)
                                 +.++...+....-.+..++|+++ .++++- .|   +.+-+||++..++...+.      ...+|....
T Consensus       296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr-nd~~PnalW~Wdlq~l~l~avLi------Qk~piraf~  368 (447)
T KOG4497|consen  296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR-NDKYPNALWLWDLQNLKLHAVLI------QKHPIRAFE  368 (447)
T ss_pred             hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee-cCCCCceEEEEechhhhhhhhhh------hccceeEEE
Confidence                       00111111222335677899999 888875 44   458999999887776663      356799999


Q ss_pred             eeccccEEEEeecCCCceEEEeeccC
Q 010784          446 MAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       446 ~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      |.|....|+.+.  ...++++|..+-
T Consensus       369 WdP~~prL~vct--g~srLY~W~psg  392 (447)
T KOG4497|consen  369 WDPGRPRLVVCT--GKSRLYFWAPSG  392 (447)
T ss_pred             eCCCCceEEEEc--CCceEEEEcCCC
Confidence            999998888877  447788887553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=2.1e-13  Score=130.52  Aligned_cols=208  Identities=14%  Similarity=0.100  Sum_probs=137.5

Q ss_pred             CCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---CcEEEEeccCCCccccccceeeccCCCCcee
Q 010784          187 DHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---ATVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       187 dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      +..|.+|| .+...+.+..|...+.+..|+    |+|+.|+.++.+   ..|.+||+.++..    ..+..+.+|.   .
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wS----PDG~~la~~s~~~~~~~i~i~dl~tg~~----~~l~~~~g~~---~  251 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWS----PDGSKLAYVSFENKKSQLVVHDLRSGAR----KVVASFRGHN---G  251 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEc----CCCCEEEEEEecCCCcEEEEEeCCCCce----EEEecCCCcc---C
Confidence            47899999 666667777888899999997    899999887654   3699999987652    1233344443   3


Q ss_pred             EEEEeecCCeEEEEE-eCCCeEEEE--ECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          263 LMSVAGHKSFLLVTI-SKDSKVRVW--DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~-s~dg~v~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      .++|+| +++.|+.+ +.+|.+.||  |+.+++.                                             .
T Consensus       252 ~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~---------------------------------------------~  285 (429)
T PRK01742        252 APAFSP-DGSRLAFASSKDGVLNIYVMGANGGTP---------------------------------------------S  285 (429)
T ss_pred             ceeECC-CCCEEEEEEecCCcEEEEEEECCCCCe---------------------------------------------E
Confidence            579998 66666654 467766555  4444321                                             1


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN  416 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~  416 (501)
                      .+..+...+.+..|+|||+.|+..+ .++ ..||++......     ...+ .+..  ....|+|+ +.++..+.++ +.
T Consensus       286 ~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-----~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~  356 (429)
T PRK01742        286 QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-----ASLV-GGRG--YSAQISADGKTLVMINGDN-VV  356 (429)
T ss_pred             eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EE
Confidence            2233455677899999999877665 445 888876543221     1112 2333  45789999 6666655554 66


Q ss_pred             EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      +||+.+++......     .  .....+.|+|||++|+.++  .++.+.+|.+
T Consensus       357 ~~Dl~~g~~~~lt~-----~--~~~~~~~~sPdG~~i~~~s--~~g~~~~l~~  400 (429)
T PRK01742        357 KQDLTSGSTEVLSS-----T--FLDESPSISPNGIMIIYSS--TQGLGKVLQL  400 (429)
T ss_pred             EEECCCCCeEEecC-----C--CCCCCceECCCCCEEEEEE--cCCCceEEEE
Confidence            69998886543221     1  1234678999999999998  4577777775

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=6.3e-12  Score=120.81  Aligned_cols=232  Identities=12%  Similarity=0.046  Sum_probs=148.5

Q ss_pred             CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC---CCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE---DATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      ..|.++| .+...+.+..|...+.+.+|+    |+|+.|+..+.   +..|.+||+.++..       ..+..+.+.+..
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wS----pDG~~lay~s~~~g~~~i~~~dl~~g~~-------~~l~~~~g~~~~  250 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFS----PNRQEITYMSYANGRPRVYLLDLETGQR-------ELVGNFPGMTFA  250 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEEC----CCCCEEEEEEecCCCCEEEEEECCCCcE-------EEeecCCCcccC
Confidence            3688888 666667777888899999997    88998887653   46899999988752       344455666778


Q ss_pred             EEEeecCCeEEEEEeCCCe--EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          264 MSVAGHKSFLLVTISKDSK--VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      .+|+|++..++++.+.++.  |.+||+.+++.                                             ..+
T Consensus       251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~---------------------------------------------~~L  285 (435)
T PRK05137        251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT---------------------------------------------TRL  285 (435)
T ss_pred             cEECCCCCEEEEEEecCCCceEEEEECCCCce---------------------------------------------EEc
Confidence            8999844444556666655  66667765532                                             112


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcC-C--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC---C
Q 010784          342 AICKPILHSFSIMPSKSLICTGGI-G--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD---L  413 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~-d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d---g  413 (501)
                      ..+........|+|||+.|+..++ +  . |+++|+..++.       ..+..+.+.+....|+|+ +.++..+.+   .
T Consensus       286 t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-------~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~  358 (435)
T PRK05137        286 TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-------RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQF  358 (435)
T ss_pred             cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-------EEeecCCCcccCeEECCCCCEEEEEEcCCCce
Confidence            223444567899999998887663 2  2 88888766432       233333455677889999 555543332   3


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCC----ceEEEeeccCCccceeecCCCCceeeec
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP----GLLQFRDFSNATCPVLKHEVQNDSKFWG  489 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~----g~i~~w~~~~~~~~~~s~~~d~~~~~w~  489 (501)
                      .|.+||+.++. ...+.    .  ...+....|+|||++|+..+.+..    ..+++.++..+....++...+..-..|.
T Consensus       359 ~i~~~d~~~~~-~~~lt----~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Ws  431 (435)
T PRK05137        359 SIGVMKPDGSG-ERILT----S--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTPGDASDPAWS  431 (435)
T ss_pred             EEEEEECCCCc-eEecc----C--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccCCCCccCcccC
Confidence            68888876543 33332    1  123667899999999887664221    3577778766555444433333344554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.53  E-value=3.9e-14  Score=125.22  Aligned_cols=217  Identities=14%  Similarity=0.141  Sum_probs=169.4

Q ss_pred             cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      +|.+|+.|+.-|.|..+|  ++.....+. -...|.++.|.    .+.+++|++ ....+.|||-..-+       +..+
T Consensus       140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~L----Hneq~~AVA-QK~y~yvYD~~GtE-------lHCl  206 (545)
T KOG1272|consen  140 NGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFL----HNEQFFAVA-QKKYVYVYDNNGTE-------LHCL  206 (545)
T ss_pred             CccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhh----cchHHHHhh-hhceEEEecCCCcE-------Eeeh
Confidence            899999999999999999  666665554 45678888885    556666665 45689999976543       5666


Q ss_pred             cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                      +.| ..|..+.|.| ---+|++++..|.++.-|+.+|+.+..                                      
T Consensus       207 k~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~--------------------------------------  246 (545)
T KOG1272|consen  207 KRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVAS--------------------------------------  246 (545)
T ss_pred             hhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHH--------------------------------------
Confidence            654 4578899998 567889999999999999999876543                                      


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD  412 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d  412 (501)
                            +....+.+..+.-+|-+..+-+|..++ |.+|...+.+      ++..+..|.++|.+|++++. +++++.+.|
T Consensus       247 ------~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske------PLvKiLcH~g~V~siAv~~~G~YMaTtG~D  314 (545)
T KOG1272|consen  247 ------IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE------PLVKILCHRGPVSSIAVDRGGRYMATTGLD  314 (545)
T ss_pred             ------HHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc------hHHHHHhcCCCcceEEECCCCcEEeecccc
Confidence                  223356677788888888899999888 9999998855      45888899999999999999 999988899


Q ss_pred             CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          413 LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       413 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      ..++|||+++...+.++..      ..+...++||..| +||.+-.   ..|.+|.
T Consensus       315 r~~kIWDlR~~~ql~t~~t------p~~a~~ls~Sqkg-lLA~~~G---~~v~iw~  360 (545)
T KOG1272|consen  315 RKVKIWDLRNFYQLHTYRT------PHPASNLSLSQKG-LLALSYG---DHVQIWK  360 (545)
T ss_pred             cceeEeeeccccccceeec------CCCcccccccccc-ceeeecC---Ceeeeeh
Confidence            9999999999887777732      2456677888766 4444432   5889996

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.53  E-value=6.8e-12  Score=106.47  Aligned_cols=307  Identities=12%  Similarity=0.063  Sum_probs=188.3

Q ss_pred             CceEEeeCCcEEEeecC-CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcC-cEEEEeeCCCce
Q 010784          113 HDHILLDNNDIFSTQGS-SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE-NVLVTSSCDHSI  190 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~-~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i  190 (501)
                      |..+.+.-+..++.++- .++.|.+|++... +-...+..-.+++.++.|||             +| .+|.+...|-.|
T Consensus        51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIdeg~agls~~~WSP-------------dgrhiL~tseF~lri  116 (447)
T KOG4497|consen   51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDEGQAGLSSISWSP-------------DGRHILLTSEFDLRI  116 (447)
T ss_pred             hhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEeccCCCcceeeeECC-------------CcceEeeeecceeEE
Confidence            55566666777777664 5789999998863 55566777788899999999             67 566777789999


Q ss_pred             EEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC------------------------------------Cc
Q 010784          191 RLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED------------------------------------AT  233 (501)
Q Consensus       191 ~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d------------------------------------g~  233 (501)
                      .||. ..+....++.....+..++|+    ++|++.+.++.-                                    ..
T Consensus       117 TVWSL~t~~~~~~~~pK~~~kg~~f~----~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~  192 (447)
T KOG4497|consen  117 TVWSLNTQKGYLLPHPKTNVKGYAFH----PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNW  192 (447)
T ss_pred             EEEEeccceeEEecccccCceeEEEC----CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcE
Confidence            9998 333333334344556778886    788887766431                                    22


Q ss_pred             EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecC-------
Q 010784          234 VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVP-------  306 (501)
Q Consensus       234 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~-------  306 (501)
                      +.+||---.-+      +. ...-.-.+..++|+| .+++++.|+.|+.+++.+--+-+....+........+       
T Consensus       193 laVwd~~Leyk------v~-aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k  264 (447)
T KOG4497|consen  193 LAVWDNVLEYK------VY-AYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK  264 (447)
T ss_pred             EEEecchhhhe------ee-eeeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence            34444321110      11 111234678899998 6889999999999998776554432221111110000       


Q ss_pred             -------CCceeeecCCCeEEEEeCC-cEEEEEc-------CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc---E
Q 010784          307 -------GVPVDMKCHESMLYIASGS-SVVTIDL-------RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK---A  368 (501)
Q Consensus       307 -------~~~~~~~~~~~~~~~~~~~-~i~~~d~-------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~---i  368 (501)
                             -..-++++.+...-..-.. .-.+|..       .+.++...+....-.+--++|++|..++++-.+.-   +
T Consensus       265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pnal  344 (447)
T KOG4497|consen  265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNAL  344 (447)
T ss_pred             hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceE
Confidence                   0001112222111100000 0011111       11111222222344577899999999999988654   9


Q ss_pred             EEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEe
Q 010784          369 MTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAM  446 (501)
Q Consensus       369 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  446 (501)
                      -+||+++.+.       ...-....+|....|+|.  +++++ .....+++|...-...+..-      ..+-.|..+.|
T Consensus       345 W~Wdlq~l~l-------~avLiQk~piraf~WdP~~prL~vc-tg~srLY~W~psg~~~V~vP------~~GF~i~~l~W  410 (447)
T KOG4497|consen  345 WLWDLQNLKL-------HAVLIQKHPIRAFEWDPGRPRLVVC-TGKSRLYFWAPSGPRVVGVP------KKGFNIQKLQW  410 (447)
T ss_pred             EEEechhhhh-------hhhhhhccceeEEEeCCCCceEEEE-cCCceEEEEcCCCceEEecC------CCCceeeeEEe
Confidence            9999998654       333334678999999999  55554 45667999987654444333      23467999999


Q ss_pred             eccccEEEEeecC
Q 010784          447 AVSGCRIVTASYG  459 (501)
Q Consensus       447 s~~g~~l~s~~~d  459 (501)
                      ..+|..++..+.|
T Consensus       411 ~~~g~~i~l~~kD  423 (447)
T KOG4497|consen  411 LQPGEFIVLCGKD  423 (447)
T ss_pred             cCCCcEEEEEcCC
Confidence            9999999999854

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.52  E-value=3.8e-13  Score=121.17  Aligned_cols=197  Identities=17%  Similarity=0.193  Sum_probs=136.2

Q ss_pred             CCcEEEeecCCeeeEEEEecccccccceecc----cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC
Q 010784          120 NNDIFSTQGSSIQNIKIDNFLSESYYRATLS----DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK  195 (501)
Q Consensus       120 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~----~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  195 (501)
                      +++.-+..|-.-|.+.+.|... .+..+.+.    -.+..|+|+.|-|.            +...|+.+-.+|.+.++|.
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg------------~~~~Fl~a~~sGnlyly~~  249 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPG------------SDSLFLVAHASGNLYLYDK  249 (636)
T ss_pred             CCCcceEEeeccCceEEecchh-hHHHHhhhhcccccccceEEEEEEeC------------CCceEEEEEecCceEEeec
Confidence            6777788888888888888664 22222221    13478999999995            5677888888999999984


Q ss_pred             CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784          196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV  275 (501)
Q Consensus       196 ~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  275 (501)
                      .        +....+...|.+.  +++..+...       .|.-.....     ++....--.+.|..++|+| ++.+|+
T Consensus       250 ~--------~~~~~t~p~~~~~--k~~~~f~i~-------t~ksk~~rN-----Pv~~w~~~~g~in~f~FS~-DG~~LA  306 (636)
T KOG2394|consen  250 E--------IVCGATAPSYQAL--KDGDQFAIL-------TSKSKKTRN-----PVARWHIGEGSINEFAFSP-DGKYLA  306 (636)
T ss_pred             c--------ccccCCCCccccc--CCCCeeEEe-------eeeccccCC-----ccceeEeccccccceeEcC-CCceEE
Confidence            1        1112222222111  333343322       221111111     3444444455889999998 999999


Q ss_pred             EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC
Q 010784          276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP  355 (501)
Q Consensus       276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~  355 (501)
                      +.+.||.++|+|..+.+.+.                                            .++..=+...|++|+|
T Consensus       307 ~VSqDGfLRvF~fdt~eLlg--------------------------------------------~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  307 TVSQDGFLRIFDFDTQELLG--------------------------------------------VMKSYFGGLLCVCWSP  342 (636)
T ss_pred             EEecCceEEEeeccHHHHHH--------------------------------------------HHHhhccceEEEEEcC
Confidence            99999999999998875432                                            2222346789999999


Q ss_pred             CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784          356 SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP  402 (501)
Q Consensus       356 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  402 (501)
                      ||++|++|++|- |.||.+...+.+      ..-++|..+|..++|+|
T Consensus       343 DGKyIvtGGEDDLVtVwSf~erRVV------ARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEERRVV------ARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CccEEEecCCcceEEEEEeccceEE------EeccccccceeeEeecc
Confidence            999999999888 999999986554      78889999999999983

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.51  E-value=9.4e-12  Score=115.15  Aligned_cols=284  Identities=10%  Similarity=0.013  Sum_probs=172.8

Q ss_pred             ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee-CCCceEE
Q 010784          114 DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS-CDHSIRL  192 (501)
Q Consensus       114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~v  192 (501)
                      ..+.+++||+++.+.+.|+.+.++|+.+. +.+.+++.-.+ -.++++++             ||++++++. .++.+.+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~-~~v~~i~~G~~-~~~i~~s~-------------DG~~~~v~n~~~~~v~v  104 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATG-KVVATIKVGGN-PRGIAVSP-------------DGKYVYVANYEPGTVSV  104 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSS-SEEEEEE-SSE-EEEEEE---------------TTTEEEEEEEETTEEEE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcc-cEEEEEecCCC-cceEEEcC-------------CCCEEEEEecCCCceeE
Confidence            44678999999988888999999999985 77777765444 57799999             889888775 5899999


Q ss_pred             ec--CCceeeeccC-------CCCceEEEEeeecCCCCCCEEEEe-eCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784          193 WW--KGSCQRCFKG-------HNGPVSTLSDKLLGDGSGKILASG-GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       193 wd--~~~~~~~~~~-------h~~~v~~l~~s~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      +|  +.+.++.+..       ....+..+..+    +....++.. -..+.|-+-|......     +............
T Consensus       105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s----~~~~~fVv~lkd~~~I~vVdy~d~~~-----~~~~~i~~g~~~~  175 (369)
T PF02239_consen  105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVAS----PGRPEFVVNLKDTGEIWVVDYSDPKN-----LKVTTIKVGRFPH  175 (369)
T ss_dssp             EETTT--EEEEEE--EE-TTTS---EEEEEE-----SSSSEEEEEETTTTEEEEEETTTSSC-----EEEEEEE--TTEE
T ss_pred             eccccccceeecccccccccccCCCceeEEec----CCCCEEEEEEccCCeEEEEEeccccc-----cceeeeccccccc
Confidence            99  5666666543       23456677665    555544444 4447777778766542     2222323344566


Q ss_pred             EEEEeecCCeEEEE-EeCCCeEEEEECCCCccccceecccceecCCC-----------ceeeecCCCeE-EEEeCCcEEE
Q 010784          263 LMSVAGHKSFLLVT-ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV-----------PVDMKCHESML-YIASGSSVVT  329 (501)
Q Consensus       263 ~l~~~~~~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~i~~  329 (501)
                      ...|.| ++++++. ...+..|-++|..+++.+....... ...++.           .+......... -......+.+
T Consensus       176 D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~-~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v  253 (369)
T PF02239_consen  176 DGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK-KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV  253 (369)
T ss_dssp             EEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS-SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred             ccccCc-ccceeeecccccceeEEEeeccceEEEEeeccc-cccccccccccCCCcceEEeeccccceecccccCCcccc
Confidence            788987 5555544 5667889999999886654322211 111111           22222222222 2233346778


Q ss_pred             EEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE---c-CCc-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecCC
Q 010784          330 IDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG---G-IGK-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDPY  403 (501)
Q Consensus       330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~---~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~  403 (501)
                      +|..+.+.+.++....+. .-+..+|+++++.+.   + +.. |.++|.++.+..      .++... ...+..+.|+++
T Consensus       254 ~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~------~~i~~~~~~~~~h~ef~~d  326 (369)
T PF02239_consen  254 HDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV------KTITPGPGKRVVHMEFNPD  326 (369)
T ss_dssp             STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE------E-HHHHHT--EEEEEE-TT
T ss_pred             chhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCccee------EEEeccCCCcEeccEECCC
Confidence            999999999999887666 778889999999998   3 334 999999986543      444321 224889999999


Q ss_pred             --eEEEEecC-CCcEEEEeCCCcccccccc
Q 010784          404 --KIVTGGRD-DLRINIWETDTGMLANSLL  430 (501)
Q Consensus       404 --~~l~~gs~-dg~i~iwd~~~~~~~~~~~  430 (501)
                        .+.++.-. ++.|.+||..+.+.+..+.
T Consensus       327 G~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  327 GKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             SSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence              55555433 3389999999999988883

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=4.7e-12  Score=109.91  Aligned_cols=251  Identities=13%  Similarity=0.125  Sum_probs=177.7

Q ss_pred             CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEE
Q 010784          205 HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVR  284 (501)
Q Consensus       205 h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~  284 (501)
                      -...|+.++|.  .++..+.+...+.|..+..+.+.........-........+++|..++..  ++ .|++|-.+|.+.
T Consensus        54 ~~~ris~l~~~--~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg-~Litc~~sG~l~  128 (412)
T KOG3881|consen   54 ELDRISSLLFG--VDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DG-TLITCVSSGNLQ  128 (412)
T ss_pred             hhhhhhhheee--cCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CC-EEEEEecCCcEE
Confidence            34567777775  23344556655567777777777665422222223445567778877765  33 678888999999


Q ss_pred             EEECCCCccccceecccceecCCCceeeecCC-CeEEEEeCC-----cEEEEEcCCCceEeeeccC---------CCcEE
Q 010784          285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE-SMLYIASGS-----SVVTIDLRTMQKVMTPAIC---------KPILH  349 (501)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~i~~~d~~~~~~~~~~~~~---------~~~v~  349 (501)
                      +|....+..-.  ..............+...+ .-.+++.|+     .+.+||++..+++..-+.-         .-.++
T Consensus       129 ~~~~k~~d~hs--s~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t  206 (412)
T KOG3881|consen  129 VRHDKSGDLHS--SKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT  206 (412)
T ss_pred             EEeccCCcccc--ccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence            99998654211  1111112222333333333 334555555     5899999998777654432         23467


Q ss_pred             EEEEcCC--CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784          350 SFSIMPS--KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML  425 (501)
Q Consensus       350 ~v~~~~~--~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~  425 (501)
                      ++.|-+.  ...|++++.-+ +|+||.+.++     +|+..+.--..+++++...|. .++.+|..-|.+..||++.++.
T Consensus       207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-----RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl  281 (412)
T KOG3881|consen  207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQR-----RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL  281 (412)
T ss_pred             cceecCCCCCceEEEEecceeEEEecCcccC-----cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence            8899887  88899999777 9999999764     567888777889999999999 8888888999999999999998


Q ss_pred             ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      +....    .+-.+.|.++..+|.+++|+++|  -|..+||+|+.+..
T Consensus       282 ~g~~~----kg~tGsirsih~hp~~~~las~G--LDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  282 LGCGL----KGITGSIRSIHCHPTHPVLASCG--LDRYVRIHDIKTRK  323 (412)
T ss_pred             ecccc----CCccCCcceEEEcCCCceEEeec--cceeEEEeecccch
Confidence            88732    56688999999999999999999  55999999988844

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=7.9e-12  Score=119.99  Aligned_cols=218  Identities=14%  Similarity=0.082  Sum_probs=138.6

Q ss_pred             CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---CcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---ATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      ..|.+|| .+...+.+..+...+.+.+|+    |+|+.|+..+.+   ..|.+||+.++..       ..+....+....
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wS----pDg~~la~~s~~~~~~~l~~~dl~~g~~-------~~l~~~~g~~~~  252 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWS----PDGKKLAYVSFERGRSAIYVQDLATGQR-------ELVASFRGINGA  252 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCC----CCCCEEEEEecCCCCcEEEEEECCCCCE-------EEeccCCCCccC
Confidence            4688899 666666677778889999997    899988877643   4699999987652       233333444557


Q ss_pred             EEEeecCCeEEEEEeCCC--eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          264 MSVAGHKSFLLVTISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      .+|+|++..++++.+.+|  .|++||+.+++.                                             ..+
T Consensus       253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~---------------------------------------------~~l  287 (433)
T PRK04922        253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL---------------------------------------------TRL  287 (433)
T ss_pred             ceECCCCCEEEEEEeCCCCceEEEEECCCCCe---------------------------------------------EEC
Confidence            799984444555656555  477778776532                                             112


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcC-C-c--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC-C--
Q 010784          342 AICKPILHSFSIMPSKSLICTGGI-G-K--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD-L--  413 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~-d-~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d-g--  413 (501)
                      ..+.......+|+|||+.|+..++ + .  |+++|+.+++.       ..+..+.......+|+|+ +.++..+.+ +  
T Consensus       288 t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-------~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~  360 (433)
T PRK04922        288 TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-------ERLTFQGNYNARASVSPDGKKIAMVHGSGGQY  360 (433)
T ss_pred             ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-------EEeecCCCCccCEEECCCCCEEEEEECCCCce
Confidence            223334457899999998887763 2 2  66677766542       122222234456899999 555543333 2  


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC-CCceEEEeeccCCccc
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSNATCP  475 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~~~~~~  475 (501)
                      .|.+||+.+++.. .+..      ........|+|||++|+..+.+ ..+.|.+++.......
T Consensus       361 ~I~v~d~~~g~~~-~Lt~------~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~  416 (433)
T PRK04922        361 RIAVMDLSTGSVR-TLTP------GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQ  416 (433)
T ss_pred             eEEEEECCCCCeE-ECCC------CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence            6999999887654 3321      1133457899999988877642 2346777777544433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.5e-11  Score=117.40  Aligned_cols=232  Identities=10%  Similarity=0.048  Sum_probs=144.0

Q ss_pred             eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC---CCceEEec-CCceeeeccCCC
Q 010784          131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC---DHSIRLWW-KGSCQRCFKGHN  206 (501)
Q Consensus       131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~vwd-~~~~~~~~~~h~  206 (501)
                      ...+.++|...  ...+.+..+...+.+.+|+|             ||+.|+..+.   +..|.+|+ .+.....+....
T Consensus       178 ~~~l~~~d~dg--~~~~~lt~~~~~~~~p~wSP-------------DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~  242 (429)
T PRK03629        178 PYELRVSDYDG--YNQFVVHRSPQPLMSPAWSP-------------DGSKLAYVTFESGRSALVIQTLANGAVRQVASFP  242 (429)
T ss_pred             ceeEEEEcCCC--CCCEEeecCCCceeeeEEcC-------------CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC
Confidence            45788888774  33345556777899999999             7888886542   35688888 222222332233


Q ss_pred             CceEEEEeeecCCCCCCEEEEe-eCCC--cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-Ce
Q 010784          207 GPVSTLSDKLLGDGSGKILASG-GEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-SK  282 (501)
Q Consensus       207 ~~v~~l~~s~~~~~~~~~l~sg-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-g~  282 (501)
                      +.+....|+    |+|+.|+.. +.+|  .|.+||+.++.       ...+..+...+....|+| +++.|+..+.+ +.
T Consensus       243 ~~~~~~~~S----PDG~~La~~~~~~g~~~I~~~d~~tg~-------~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~  310 (429)
T PRK03629        243 RHNGAPAFS----PDGSKLAFALSKTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGR  310 (429)
T ss_pred             CCcCCeEEC----CCCCEEEEEEcCCCCcEEEEEECCCCC-------EEEccCCCCCcCceEECC-CCCEEEEEeCCCCC
Confidence            344567887    899877754 4455  58889998765       233444445677889998 66666665543 44


Q ss_pred             EEEE--ECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784          283 VRVW--DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI  360 (501)
Q Consensus       283 v~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l  360 (501)
                      ..+|  |+.+++.                                             ..+..+........|+|||+++
T Consensus       311 ~~Iy~~d~~~g~~---------------------------------------------~~lt~~~~~~~~~~~SpDG~~I  345 (429)
T PRK03629        311 PQVYKVNINGGAP---------------------------------------------QRITWEGSQNQDADVSSDGKFM  345 (429)
T ss_pred             ceEEEEECCCCCe---------------------------------------------EEeecCCCCccCEEECCCCCEE
Confidence            3444  5444321                                             1111123334568899999988


Q ss_pred             EEEc-CC--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCc---EEEEeCCCcccccccccC
Q 010784          361 CTGG-IG--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLR---INIWETDTGMLANSLLCN  432 (501)
Q Consensus       361 ~~~~-~d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~---i~iwd~~~~~~~~~~~~~  432 (501)
                      +..+ .+  . |.+||+.+++.       ..+.. ........|+|+ +.++.++.++.   +.++++ +|+....+   
T Consensus       346 a~~~~~~g~~~I~~~dl~~g~~-------~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l---  413 (429)
T PRK03629        346 VMVSSNGGQQHIAKQDLATGGV-------QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARL---  413 (429)
T ss_pred             EEEEccCCCceEEEEECCCCCe-------EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEEC---
Confidence            7765 22  3 88899987653       22221 112346789999 66666566654   677777 46666666   


Q ss_pred             CCCCCCcceeeeEeec
Q 010784          433 YPEEADISTGCSAMAV  448 (501)
Q Consensus       433 ~~~~~~~~v~~~~~s~  448 (501)
                        ..|...+...+|+|
T Consensus       414 --~~~~~~~~~p~Wsp  427 (429)
T PRK03629        414 --PATDGQVKFPAWSP  427 (429)
T ss_pred             --ccCCCCcCCcccCC
Confidence              33456677788887

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.50  E-value=3.4e-12  Score=108.96  Aligned_cols=166  Identities=14%  Similarity=0.125  Sum_probs=117.8

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEeccccccccee-cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRAT-LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      +...++...+-|...-+.+.+.|.+++||--....+.-.. ...-..+++++.+.+             +...|+.|-..
T Consensus        23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-------------e~~~L~vg~~n   89 (404)
T KOG1409|consen   23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-------------ESRRLYVGQDN   89 (404)
T ss_pred             chhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-------------cceEEEEEEec
Confidence            3334566666667777889999999999975543233222 233467799999988             78899999999


Q ss_pred             CceEEec------CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc-----------------
Q 010784          188 HSIRLWW------KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK-----------------  244 (501)
Q Consensus       188 g~i~vwd------~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-----------------  244 (501)
                      |++.-+.      .....+....|...|..+-|+    .....+++.+.|..+.---.+.+..                 
T Consensus        90 gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~----~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~  165 (404)
T KOG1409|consen   90 GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS----LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA  165 (404)
T ss_pred             ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec----CCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee
Confidence            9998774      334556667899999988886    4556777776665543221111111                 


Q ss_pred             ------------------cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784          245 ------------------RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS  292 (501)
Q Consensus       245 ------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~  292 (501)
                                        .....++.++.+|.+.+++++|.+ ...++.+|..|..+.+||+...+
T Consensus       166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence                              122346778899999999999997 67799999999999999997654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.49  E-value=1.4e-11  Score=103.04  Aligned_cols=270  Identities=11%  Similarity=0.072  Sum_probs=172.5

Q ss_pred             eeEEEEecccccccce--e-cccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEeeCCCceEEec--CCceeeecc--
Q 010784          132 QNIKIDNFLSESYYRA--T-LSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTSSCDHSIRLWW--KGSCQRCFK--  203 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~--~-~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~vwd--~~~~~~~~~--  203 (501)
                      |.+.++++... +...  + ...-+..+..+.|..-.          .+|. .++-+-.+|.|.++.  .......++  
T Consensus        46 Gkl~Lys~~d~-~~~~l~~~q~~dts~~~dm~w~~~~----------~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l  114 (339)
T KOG0280|consen   46 GKLHLYSLEDM-KLSPLDTLQCTDTSTEFDMLWRIRE----------TDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL  114 (339)
T ss_pred             cceEEEeeccc-ccCccceeeeecccccceeeeeecc----------CCccceeeeccccceEEEEeeccceeeeeeccc
Confidence            56777777653 2222  1 12234557777776421          1444 566677789999995  111111222  


Q ss_pred             -CCCC---ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC
Q 010784          204 -GHNG---PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK  279 (501)
Q Consensus       204 -~h~~---~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~  279 (501)
                       .-.-   ...++.|+    +.+..++++..+|.+.+-+.....    .+.++..+.|.-+.....|+..+.+++.+|+.
T Consensus       115 s~~ki~~~~~lslD~~----~~~~~i~vs~s~G~~~~v~~t~~~----le~vq~wk~He~E~Wta~f~~~~pnlvytGgD  186 (339)
T KOG0280|consen  115 SSKKISVVEALSLDIS----TSGTKIFVSDSRGSISGVYETEMV----LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGD  186 (339)
T ss_pred             chhhhhheeeeEEEee----ccCceEEEEcCCCcEEEEecceee----eeecccccccceeeeeeecccCCCceEEecCC
Confidence             1111   23466675    778889999999999865554432    12355788999999999999878899999999


Q ss_pred             CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE-eeeccCCCcEEEEEEcC-CC
Q 010784          280 DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV-MTPAICKPILHSFSIMP-SK  357 (501)
Q Consensus       280 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~v~~v~~~~-~~  357 (501)
                      |+.+..||++..+.                                           .+ ...+.|...|.+|.-+| .+
T Consensus       187 D~~l~~~D~R~p~~-------------------------------------------~i~~n~kvH~~GV~SI~ss~~~~  223 (339)
T KOG0280|consen  187 DGSLSCWDIRIPKT-------------------------------------------FIWHNSKVHTSGVVSIYSSPPKP  223 (339)
T ss_pred             CceEEEEEecCCcc-------------------------------------------eeeecceeeecceEEEecCCCCC
Confidence            99999999994321                                           11 12344788899998886 48


Q ss_pred             cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEEEEeCCCcccccccccCC
Q 010784          358 SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWETDTGMLANSLLCNY  433 (501)
Q Consensus       358 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~  433 (501)
                      .++++|+.|. |++||.|+....     +..-. -.+.|..+..+|.   ++++++ .-.-.+|-+.+.+..-.......
T Consensus       224 ~~I~TGsYDe~i~~~DtRnm~kP-----l~~~~-v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s  296 (339)
T KOG0280|consen  224 TYIATGSYDECIRVLDTRNMGKP-----LFKAK-VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDKVLEFQIVLPS  296 (339)
T ss_pred             ceEEEeccccceeeeehhcccCc-----cccCc-cccceEEEEecchhhhHHHHHH-HhcCceEEEecccccchheeeec
Confidence            8999999777 999999965432     33322 2488999999998   566665 55558888877643321111111


Q ss_pred             CCCCCcceeeeEeeccccEEEEeecCCCceEE-EeeccC
Q 010784          434 PEEADISTGCSAMAVSGCRIVTASYGEPGLLQ-FRDFSN  471 (501)
Q Consensus       434 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~-~w~~~~  471 (501)
                      ...|.+-...-.|......|++++. -|..++ +|-.-+
T Consensus       297 ~~~hdSl~YG~DWd~~~~~lATCsF-YDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  297 DKIHDSLCYGGDWDSKDSFLATCSF-YDKKIRQLWLHIT  334 (339)
T ss_pred             cccccceeeccccccccceeeeeec-cccceeeeeeecc
Confidence            1445555555566444467888765 345544 665433

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.49  E-value=3e-14  Score=88.76  Aligned_cols=47  Identities=21%  Similarity=0.526  Sum_probs=40.8

Q ss_pred             cccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhh
Q 010784           20 IADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFRE   66 (501)
Q Consensus        20 ~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~   66 (501)
                      +..||+|++.+||+||+++||.++++|||+|+.++.++.+|++++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r   47 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR   47 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence            46799999999999999999999999999999999999999998753

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.48  E-value=4.5e-12  Score=108.21  Aligned_cols=268  Identities=14%  Similarity=0.188  Sum_probs=166.8

Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC------------CceeEEEEeec-CCe
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE------------KPIKLMSVAGH-KSF  272 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~v~~l~~~~~-~~~  272 (501)
                      ..-|.++.|.    ..|++|++|..+|.|.++.-..... .+......+..|.            ..|..+.|.+. +..
T Consensus        25 adiis~vef~----~~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a   99 (433)
T KOG1354|consen   25 ADIISAVEFD----HYGERLATGDKGGRVVLFEREKLYK-GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA   99 (433)
T ss_pred             hcceeeEEee----cccceEeecCCCCeEEEeecccccc-cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence            4568899995    8999999999999999997654332 1223344444454            35778888764 355


Q ss_pred             EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC-CceEee-eccCCCcEEE
Q 010784          273 LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT-MQKVMT-PAICKPILHS  350 (501)
Q Consensus       273 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~-~~~~~~~v~~  350 (501)
                      .++..+.|.+|++|-+..................+.+..+.      +...+.    .|+.- ..+.+. -.+|..-|++
T Consensus       100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr------~p~~~~----~~~~vea~prRv~aNaHtyhiNS  169 (433)
T KOG1354|consen  100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR------LPVEGR----HDLEVEASPRRVYANAHTYHINS  169 (433)
T ss_pred             EEEEecCCcceeeeeeeccccccccccccccCCCCccceee------ceeecc----ccceeeeeeeeeccccceeEeee
Confidence            77888899999999987654322100000001111111100      000000    00000 011122 2358888999


Q ss_pred             EEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCc-----ccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc
Q 010784          351 FSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH-----VGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       351 v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~  423 (501)
                      +.++.|++.++++.+=+|.+|++.-....+   -+..++.+     ...|++..|+|.  .+++-+|..|+|++-|++..
T Consensus       170 IS~NsD~Et~lSADdLRINLWnlei~d~sF---nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~  246 (433)
T KOG1354|consen  170 ISVNSDKETFLSADDLRINLWNLEIIDQSF---NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS  246 (433)
T ss_pred             eeecCccceEeeccceeeeeccccccCCce---eEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence            999999999998877779999987654321   11222222     457899999998  77777789999999999843


Q ss_pred             ccc----cccccCC-C------CCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc-------------------
Q 010784          424 MLA----NSLLCNY-P------EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT-------------------  473 (501)
Q Consensus       424 ~~~----~~~~~~~-~------~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~-------------------  473 (501)
                      .+-    ..+.... +      .+--..|..+.|+++|++|++-.+   -+|++||+....                   
T Consensus       247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy---ltvk~wD~nme~~pv~t~~vh~~lr~kLc~l  323 (433)
T KOG1354|consen  247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY---LTVKLWDLNMEAKPVETYPVHEYLRSKLCSL  323 (433)
T ss_pred             hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc---ceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence            211    1111000 0      112345788999999999999865   599999964322                   


Q ss_pred             ------------------cceeecCCCCceeeecccCCC
Q 010784          474 ------------------CPVLKHEVQNDSKFWGPQCYS  494 (501)
Q Consensus       474 ------------------~~~~s~~~d~~~~~w~~~~~~  494 (501)
                                        ..+.+|+-.+..++++.+.++
T Consensus       324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             hhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence                              345578888888888866544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2e-11  Score=117.18  Aligned_cols=232  Identities=16%  Similarity=0.053  Sum_probs=142.9

Q ss_pred             eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC---CceEEec-CCceeeeccCCC
Q 010784          131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD---HSIRLWW-KGSCQRCFKGHN  206 (501)
Q Consensus       131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd-~~~~~~~~~~h~  206 (501)
                      ...|.+||...  ...+.+..|...+.+.+|+|             +|+.|+..+.+   ..|.+|| .+.....+..+.
T Consensus       183 ~~~l~i~D~~g--~~~~~lt~~~~~v~~p~wSp-------------Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~  247 (433)
T PRK04922        183 RYALQVADSDG--YNPQTILRSAEPILSPAWSP-------------DGKKLAYVSFERGRSAIYVQDLATGQRELVASFR  247 (433)
T ss_pred             eEEEEEECCCC--CCceEeecCCCccccccCCC-------------CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC
Confidence            45788898863  44456667788899999999             88888887643   4688998 333333344444


Q ss_pred             CceEEEEeeecCCCCCCEEE-EeeCCC--cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCCe
Q 010784          207 GPVSTLSDKLLGDGSGKILA-SGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSK  282 (501)
Q Consensus       207 ~~v~~l~~s~~~~~~~~~l~-sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~  282 (501)
                      +...+..|+    ++|+.|+ +.+.+|  .|.+||+.++.       ...+..+.......+|+| +++.|+.++ .+|.
T Consensus       248 g~~~~~~~S----pDG~~l~~~~s~~g~~~Iy~~d~~~g~-------~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~  315 (433)
T PRK04922        248 GINGAPSFS----PDGRRLALTLSRDGNPEIYVMDLGSRQ-------LTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGR  315 (433)
T ss_pred             CCccCceEC----CCCCEEEEEEeCCCCceEEEEECCCCC-------eEECccCCCCccceEECC-CCCEEEEEECCCCC
Confidence            455677887    7888665 555555  58999998765       344455555556789998 566666555 3444


Q ss_pred             --EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784          283 --VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI  360 (501)
Q Consensus       283 --v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l  360 (501)
                        |.++|+.+++..                                             .+..+.......+|+|+|+.+
T Consensus       316 ~~iy~~dl~~g~~~---------------------------------------------~lt~~g~~~~~~~~SpDG~~I  350 (433)
T PRK04922        316 PQIYRVAASGGSAE---------------------------------------------RLTFQGNYNARASVSPDGKKI  350 (433)
T ss_pred             ceEEEEECCCCCeE---------------------------------------------EeecCCCCccCEEECCCCCEE
Confidence              555555444210                                             111112234468999999998


Q ss_pred             EEEc-CC--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC---CCcEEEEeCCCcccccccccC
Q 010784          361 CTGG-IG--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD---DLRINIWETDTGMLANSLLCN  432 (501)
Q Consensus       361 ~~~~-~d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~  432 (501)
                      +..+ .+  . |.+||+.+++..       .+. +........|+|+ +.++..+.   .+.|.++++. +.....+.  
T Consensus       351 a~~~~~~~~~~I~v~d~~~g~~~-------~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~--  419 (433)
T PRK04922        351 AMVHGSGGQYRIAVMDLSTGSVR-------TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLV--  419 (433)
T ss_pred             EEEECCCCceeEEEEECCCCCeE-------ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcc--
Confidence            8754 22  2 999999876532       222 2223456789999 55444333   2457778874 44455552  


Q ss_pred             CCCCCCcceeeeEeec
Q 010784          433 YPEEADISTGCSAMAV  448 (501)
Q Consensus       433 ~~~~~~~~v~~~~~s~  448 (501)
                         .+.+.+...+|+|
T Consensus       420 ---~~~g~~~~p~wsp  432 (433)
T PRK04922        420 ---SADGEVREPAWSP  432 (433)
T ss_pred             ---cCCCCCCCCccCC
Confidence               2234456667765

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=7.2e-11  Score=112.82  Aligned_cols=218  Identities=12%  Similarity=0.048  Sum_probs=134.7

Q ss_pred             ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee---CCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG---EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      .|.+|| .+...+.+..+...+.+.+|+    |+|+.|+..+   .+..|.+|++.+++.    ..+..+.+   .+...
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wS----PDG~~la~~s~~~g~~~i~i~dl~~G~~----~~l~~~~~---~~~~~  248 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWS----PDGSKLAYVTFESGRSALVIQTLANGAV----RQVASFPR---HNGAP  248 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEc----CCCCEEEEEEecCCCcEEEEEECCCCCe----EEccCCCC---CcCCe
Confidence            688888 565556666677789999997    8998888654   245799999987652    12222333   34467


Q ss_pred             EEeecCCeEEE-EEeCCC--eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          265 SVAGHKSFLLV-TISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       265 ~~~~~~~~~l~-s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      .|+| +++.|+ +.+.+|  .|.+||+.+++..                                             .+
T Consensus       249 ~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~---------------------------------------------~l  282 (429)
T PRK03629        249 AFSP-DGSKLAFALSKTGSLNLYVMDLASGQIR---------------------------------------------QV  282 (429)
T ss_pred             EECC-CCCEEEEEEcCCCCcEEEEEECCCCCEE---------------------------------------------Ec
Confidence            8998 555555 444444  4777787765321                                             11


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcC-Cc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE-ecCC--C
Q 010784          342 AICKPILHSFSIMPSKSLICTGGI-GK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG-GRDD--L  413 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~-gs~d--g  413 (501)
                      ..+...+....|+|||+.|+..++ ++   |.++|+.+++.       ..+..+........|+|+ +.++. +..+  .
T Consensus       283 t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-------~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~  355 (429)
T PRK03629        283 TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ  355 (429)
T ss_pred             cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-------EEeecCCCCccCEEECCCCCEEEEEEccCCCc
Confidence            122345677899999998877664 33   44456655432       233333344567889998 55544 3333  3


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC-CceEEEeeccCCcccee
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE-PGLLQFRDFSNATCPVL  477 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~-~g~i~~w~~~~~~~~~~  477 (501)
                      .|.+||+.+++.. .+..      ........|+|||++|+.++.+. ...+.++++........
T Consensus       356 ~I~~~dl~~g~~~-~Lt~------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l  413 (429)
T PRK03629        356 HIAKQDLATGGVQ-VLTD------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL  413 (429)
T ss_pred             eEEEEECCCCCeE-EeCC------CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEEC
Confidence            5888999887643 3321      11234578999999999988542 12367777754443333

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=2.8e-11  Score=115.78  Aligned_cols=235  Identities=12%  Similarity=0.065  Sum_probs=140.0

Q ss_pred             eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC---CceEEec-CCceeeeccCCC
Q 010784          131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD---HSIRLWW-KGSCQRCFKGHN  206 (501)
Q Consensus       131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd-~~~~~~~~~~h~  206 (501)
                      ...+.++|..  ....+.+..+.+.+.+.+|+|             ||+.|+..+.+   ..|.+|| .+.....+....
T Consensus       175 ~~~L~~~D~d--G~~~~~l~~~~~~v~~p~wSP-------------DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~  239 (427)
T PRK02889        175 RYQLQISDAD--GQNAQSALSSPEPIISPAWSP-------------DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK  239 (427)
T ss_pred             ccEEEEECCC--CCCceEeccCCCCcccceEcC-------------CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC
Confidence            3456667764  344455667888899999999             88888877643   3588899 322233333344


Q ss_pred             CceEEEEeeecCCCCCCEEE-EeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCCeEE
Q 010784          207 GPVSTLSDKLLGDGSGKILA-SGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSKVR  284 (501)
Q Consensus       207 ~~v~~l~~s~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~  284 (501)
                      +.+.+..|+    |+|+.|+ +.+.+|...+|.++....     ....+..+........|+| +++.|+..+ .+|...
T Consensus       240 g~~~~~~~S----PDG~~la~~~~~~g~~~Iy~~d~~~~-----~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~  309 (427)
T PRK02889        240 GSNSAPAWS----PDGRTLAVALSRDGNSQIYTVNADGS-----GLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQ  309 (427)
T ss_pred             CCccceEEC----CCCCEEEEEEccCCCceEEEEECCCC-----CcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcE
Confidence            556688897    8888776 567788877776653221     2344544555566778998 566665544 345566


Q ss_pred             EEECC--CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEE
Q 010784          285 VWDTS--TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICT  362 (501)
Q Consensus       285 vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  362 (501)
                      +|.+.  +++..                                          . ..+  +........|+|+|++|+.
T Consensus       310 Iy~~~~~~g~~~------------------------------------------~-lt~--~g~~~~~~~~SpDG~~Ia~  344 (427)
T PRK02889        310 IYRMPASGGAAQ------------------------------------------R-VTF--TGSYNTSPRISPDGKLLAY  344 (427)
T ss_pred             EEEEECCCCceE------------------------------------------E-Eec--CCCCcCceEECCCCCEEEE
Confidence            66543  22110                                          0 011  1222345789999999886


Q ss_pred             EcC-C--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE-EecCCCc--EEEEeCCCcccccccccCCC
Q 010784          363 GGI-G--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT-GGRDDLR--INIWETDTGMLANSLLCNYP  434 (501)
Q Consensus       363 ~~~-d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~-~gs~dg~--i~iwd~~~~~~~~~~~~~~~  434 (501)
                      .+. +  . |.+||+.+++..       .+.. ........|+|+ +.++ +....|.  +.+.++ +++....+.    
T Consensus       345 ~s~~~g~~~I~v~d~~~g~~~-------~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~----  411 (427)
T PRK02889        345 ISRVGGAFKLYVQDLATGQVT-------ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS----  411 (427)
T ss_pred             EEccCCcEEEEEEECCCCCeE-------EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee----
Confidence            653 2  2 999999876532       2221 123467789999 4444 4333333  555555 455555552    


Q ss_pred             CCCCcceeeeEeecc
Q 010784          435 EEADISTGCSAMAVS  449 (501)
Q Consensus       435 ~~~~~~v~~~~~s~~  449 (501)
                       .+.+.+...+|+|-
T Consensus       412 -~~~g~~~~p~wsp~  425 (427)
T PRK02889        412 -VQGGDVREPSWGPF  425 (427)
T ss_pred             -cCCCCCCCCccCCC
Confidence             23445666777763

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=1.7e-11  Score=105.44  Aligned_cols=210  Identities=14%  Similarity=0.183  Sum_probs=141.2

Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCCeEE
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDSKVR  284 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~  284 (501)
                      +..+..++|+    +.-..++++..|-.|++|+-....       ...++ .....|++++|-|.....|+.|+..| |.
T Consensus        98 ~~dlr~~aWh----qH~~~fava~nddvVriy~ksst~-------pt~Lks~sQrnvtclawRPlsaselavgCr~g-Ic  165 (445)
T KOG2139|consen   98 EIDLRGVAWH----QHIIAFAVATNDDVVRIYDKSSTC-------PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-IC  165 (445)
T ss_pred             hcceeeEeec----hhhhhhhhhccCcEEEEeccCCCC-------CceecchhhcceeEEEeccCCcceeeeeecce-eE
Confidence            3456778887    455567888999999999987732       33333 24567999999998888888888754 89


Q ss_pred             EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC-CceEeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784          285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT-MQKVMTPAICKPILHSFSIMPSKSLICTG  363 (501)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  363 (501)
                      +|.....-....            ...+-                   .+ ...+....+| .+|+++.|.+||..++++
T Consensus       166 iW~~s~tln~~r------------~~~~~-------------------s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tA  213 (445)
T KOG2139|consen  166 IWSDSRTLNANR------------NIRMM-------------------STHHLQVLQDPGH-NPVTSMQWNEDGTILVTA  213 (445)
T ss_pred             EEEcCccccccc------------ccccc-------------------cccchhheeCCCC-ceeeEEEEcCCCCEEeec
Confidence            998754311000            00000                   00 0112233344 789999999999999999


Q ss_pred             cC-Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeC-CCcccccccccCCCCCCCc
Q 010784          364 GI-GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWET-DTGMLANSLLCNYPEEADI  439 (501)
Q Consensus       364 ~~-d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~  439 (501)
                      +- +. |.|||..++...    ++..  ---+.++-+.|+|+ .++.+++-|+..++|+. ++....+-..      ..+
T Consensus       214 S~gsssi~iWdpdtg~~~----pL~~--~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l------gsg  281 (445)
T KOG2139|consen  214 SFGSSSIMIWDPDTGQKI----PLIP--KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL------GSG  281 (445)
T ss_pred             ccCcceEEEEcCCCCCcc----cccc--cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec------cCC
Confidence            94 44 999999998754    2332  22567889999999 66666679999999954 3333333331      134


Q ss_pred             ceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      .|...+|+|+|++|..+.+   |.-+++.+...++
T Consensus       282 rvqtacWspcGsfLLf~~s---gsp~lysl~f~~~  313 (445)
T KOG2139|consen  282 RVQTACWSPCGSFLLFACS---GSPRLYSLTFDGE  313 (445)
T ss_pred             ceeeeeecCCCCEEEEEEc---CCceEEEEeecCC
Confidence            8999999999998877664   4556666554444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.7e-11  Score=111.66  Aligned_cols=246  Identities=14%  Similarity=0.138  Sum_probs=167.0

Q ss_pred             CCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeeccCC-CCceeEEEEeecCCeEEEEEeCCC
Q 010784          204 GHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATLYGH-EKPIKLMSVAGHKSFLLVTISKDS  281 (501)
Q Consensus       204 ~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~s~dg  281 (501)
                      .+...-+.|..+    ++|+|+ ++|..--.|++||+....        ..+..| ...+..+....++-..++.--.|.
T Consensus        49 e~p~ast~ik~s----~DGqY~lAtG~YKP~ikvydlanLS--------LKFERhlDae~V~feiLsDD~SK~v~L~~DR  116 (703)
T KOG2321|consen   49 EMPTASTRIKVS----PDGQYLLATGTYKPQIKVYDLANLS--------LKFERHLDAEVVDFEILSDDYSKSVFLQNDR  116 (703)
T ss_pred             CCccccceeEec----CCCcEEEEecccCCceEEEEcccce--------eeeeecccccceeEEEeccchhhheEeecCc
Confidence            366677888886    888875 566778899999998753        333334 333433333323444444445666


Q ss_pred             eEEEEECCCCccccceecccceecCCCceee-ecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784          282 KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM-KCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI  360 (501)
Q Consensus       282 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l  360 (501)
                      +|.+-.--.. .     ........+.-++. .++-+..+++++..|+-++++.|+-+..+....+.++++..++-..+|
T Consensus       117 ~IefHak~G~-h-----y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLl  190 (703)
T KOG2321|consen  117 TIEFHAKYGR-H-----YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLL  190 (703)
T ss_pred             eeeehhhcCe-e-----eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceE
Confidence            6655332111 0     00000122222333 234456667778899999999999999998888999999999999999


Q ss_pred             EEEcCCc-EEEEecCCCCCCCCCCCcccccCccc-----CeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCC
Q 010784          361 CTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVG-----SVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNY  433 (501)
Q Consensus       361 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~  433 (501)
                      ++|+.++ |..||.+....+........+..|.+     .|+++.|+.+ --++.|+.+|.|.|||+++.+++..-.   
T Consensus       191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd---  267 (703)
T KOG2321|consen  191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD---  267 (703)
T ss_pred             EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc---
Confidence            9999888 99999998765422222223333433     4999999998 777888999999999999988876653   


Q ss_pred             CCCCCcceeeeEeecc--ccEEEEeecCCCceEEEeeccCCcc
Q 010784          434 PEEADISTGCSAMAVS--GCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       434 ~~~~~~~v~~~~~s~~--g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                       .+...+|..+.|.+.  +..+++.   +...+++||-.++..
T Consensus       268 -h~~e~pi~~l~~~~~~~q~~v~S~---Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  268 -HGYELPIKKLDWQDTDQQNKVVSM---DKRILKIWDECTGKP  306 (703)
T ss_pred             -cCCccceeeecccccCCCceEEec---chHHhhhcccccCCc
Confidence             233567888888765  4566665   567999999665554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=4.4e-11  Score=114.43  Aligned_cols=232  Identities=14%  Similarity=0.118  Sum_probs=138.1

Q ss_pred             CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---CcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---ATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      ..|.++| .+...+.+..+...+.+.+|+    |+|+.|+..+.+   ..|.+||+.++..       ..+....+.+..
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wS----PDG~~la~~s~~~~~~~I~~~dl~~g~~-------~~l~~~~g~~~~  244 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWS----PDGTKLAYVSFESKKPVVYVHDLATGRR-------RVVANFKGSNSA  244 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEc----CCCCEEEEEEccCCCcEEEEEECCCCCE-------EEeecCCCCccc
Confidence            3566777 666666666778889999997    899988876643   3599999988753       223333345567


Q ss_pred             EEEeecCCeEEEEEeCCCeEEEEECC--CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          264 MSVAGHKSFLLVTISKDSKVRVWDTS--TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      ..|+|++..++++.+.+|...+|.+.  ++.                                             ...+
T Consensus       245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------------------------------------~~~l  279 (427)
T PRK02889        245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG---------------------------------------------LRRL  279 (427)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCC---------------------------------------------cEEC
Confidence            89998444444566777776666543  221                                             1122


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcC-Cc-EEEEec--CCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC---
Q 010784          342 AICKPILHSFSIMPSKSLICTGGI-GK-AMTWDI--RRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL---  413 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~-d~-i~iwd~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg---  413 (501)
                      ..+........|+|||+.|+..++ ++ ..+|.+  ..++.       ..+..+........|+|+ +.++..+.++   
T Consensus       280 t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-------~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~  352 (427)
T PRK02889        280 TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-------QRVTFTGSYNTSPRISPDGKLLAYISRVGGAF  352 (427)
T ss_pred             CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-------EEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence            223344556789999998876663 33 555554  43321       111112223446789999 6665544443   


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc--eEEEeeccCCcccee-ecCCCCceeeecc
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG--LLQFRDFSNATCPVL-KHEVQNDSKFWGP  490 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g--~i~~w~~~~~~~~~~-s~~~d~~~~~w~~  490 (501)
                      .|.+||+.+++.. .+.    .  ........|+|||++|+.++.+ .|  .+.+.+......... ....+-....|.+
T Consensus       353 ~I~v~d~~~g~~~-~lt----~--~~~~~~p~~spdg~~l~~~~~~-~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        353 KLYVQDLATGQVT-ALT----D--TTRDESPSFAPNGRYILYATQQ-GGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             EEEEEECCCCCeE-Ecc----C--CCCccCceECCCCCEEEEEEec-CCCEEEEEEECCCCceEEeecCCCCCCCCccCC
Confidence            6999999887654 332    1  1223567999999999888753 33  355555533222222 2223334445643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.1e-09  Score=103.73  Aligned_cols=253  Identities=13%  Similarity=0.077  Sum_probs=168.9

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      -+++.|++.|.+ |.|+. ..|.|-|..+ .+.+..+..|+..|+.+.|.|...+ ..-.+.+...-+||++...|.|.+
T Consensus        18 ~~A~Dw~~~GLi-Aygsh-slV~VVDs~s-~q~iqsie~h~s~V~~VrWap~~~p-~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   18 RNAADWSPSGLI-AYGSH-SLVSVVDSRS-LQLIQSIELHQSAVTSVRWAPAPSP-RDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             ccccccCccceE-EEecC-ceEEEEehhh-hhhhhccccCccceeEEEeccCCCc-hhccCccccceeEEeccccCcEEE
Confidence            567778887755 44443 4566667666 5889999999999999999984321 111111123457888888999999


Q ss_pred             ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784          193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK  270 (501)
Q Consensus       193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  270 (501)
                      ||  .+..+..+..|..++..++|-+..+....+|+.-....++.+|+..+|++      .-..........|+.+.|-+
T Consensus        94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k------~Wk~~ys~~iLs~f~~DPfd  167 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK------FWKYDYSHEILSCFRVDPFD  167 (1062)
T ss_pred             EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce------eeccccCCcceeeeeeCCCC
Confidence            99  67777788889999999999876655546777767778999999999985      44444445566778998887


Q ss_pred             CeEEEEEeCCCeEEEEECCCCcccc----ceecccc--------------eec---CCC------ceeeecC---CCeEE
Q 010784          271 SFLLVTISKDSKVRVWDTSTSSAVR----SSCCVGM--------------TSV---PGV------PVDMKCH---ESMLY  320 (501)
Q Consensus       271 ~~~l~s~s~dg~v~vwd~~~~~~~~----~~~~~~~--------------~~~---~~~------~~~~~~~---~~~~~  320 (501)
                      ...+..-+..|.+.+-+.-..+...    .+.....              ...   +..      ...+++.   .+.++
T Consensus       168 ~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf  247 (1062)
T KOG1912|consen  168 SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF  247 (1062)
T ss_pred             cceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE
Confidence            7777777777777776653222110    0000000              000   000      0011222   34567


Q ss_pred             EEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC--CcEEEEEcCCc-EEEEecCC
Q 010784          321 IASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS--KSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       321 ~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~d~-i~iwd~~~  375 (501)
                      ++--..+.++|++-...+.......+.+.-+.+-|+  ...+.+.-.+| +.+|-.+.
T Consensus       248 i~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  248 ITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            777789999999998888877776676666777776  45677777776 88886543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.6e-10  Score=111.25  Aligned_cols=231  Identities=12%  Similarity=-0.001  Sum_probs=145.2

Q ss_pred             eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC---CCceEEec-CCceeeeccCCC
Q 010784          131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC---DHSIRLWW-KGSCQRCFKGHN  206 (501)
Q Consensus       131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~vwd-~~~~~~~~~~h~  206 (501)
                      ...|.++|...  ...+.+..|...+.+.+|+|             ||+.|+..+.   +..|.+|| .+.....+..+.
T Consensus       181 ~~~l~~~d~dg--~~~~~lt~~~~~v~~p~wSp-------------DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~  245 (435)
T PRK05137        181 IKRLAIMDQDG--ANVRYLTDGSSLVLTPRFSP-------------NRQEITYMSYANGRPRVYLLDLETGQRELVGNFP  245 (435)
T ss_pred             ceEEEEECCCC--CCcEEEecCCCCeEeeEECC-------------CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC
Confidence            45788888763  45566778888999999999             7888887654   46799999 333334455566


Q ss_pred             CceEEEEeeecCCCCCCEEE-EeeCCCc--EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-CC-
Q 010784          207 GPVSTLSDKLLGDGSGKILA-SGGEDAT--VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-DS-  281 (501)
Q Consensus       207 ~~v~~l~~s~~~~~~~~~l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-dg-  281 (501)
                      +.+....|+    |+|+.|+ +.+.++.  |.+||+.++.       ...+..+........|+| +++.++..+. +| 
T Consensus       246 g~~~~~~~S----PDG~~la~~~~~~g~~~Iy~~d~~~~~-------~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~  313 (435)
T PRK05137        246 GMTFAPRFS----PDGRKVVMSLSQGGNTDIYTMDLRSGT-------TTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGS  313 (435)
T ss_pred             CcccCcEEC----CCCCEEEEEEecCCCceEEEEECCCCc-------eEEccCCCCccCceeEcC-CCCEEEEEECCCCC
Confidence            677788897    7888765 5566665  6667877654       344555666667789998 6666666553 33 


Q ss_pred             -eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784          282 -KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI  360 (501)
Q Consensus       282 -~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l  360 (501)
                       .|.++|+.+++.                                             ..+..+...+....|+|+|+.|
T Consensus       314 ~~Iy~~d~~g~~~---------------------------------------------~~lt~~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        314 PQLYVMNADGSNP---------------------------------------------RRISFGGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             CeEEEEECCCCCe---------------------------------------------EEeecCCCcccCeEECCCCCEE
Confidence             466666654421                                             1111123445667899999998


Q ss_pred             EEEcC--C-c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE-EecCC-----CcEEEEeCCCccccccc
Q 010784          361 CTGGI--G-K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT-GGRDD-----LRINIWETDTGMLANSL  429 (501)
Q Consensus       361 ~~~~~--d-~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~-~gs~d-----g~i~iwd~~~~~~~~~~  429 (501)
                      +..+.  + . |.+||+..+..       ..+. ....+....|+|+ +.++ ++...     ..+.++|+..+.. ..+
T Consensus       349 a~~~~~~~~~~i~~~d~~~~~~-------~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l  419 (435)
T PRK05137        349 AFTKQGGGQFSIGVMKPDGSGE-------RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REV  419 (435)
T ss_pred             EEEEcCCCceEEEEEECCCCce-------Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEc
Confidence            87652  2 3 88888755432       2222 1224677899999 5444 33222     2578888765443 344


Q ss_pred             ccCCCCCCCcceeeeEeec
Q 010784          430 LCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       430 ~~~~~~~~~~~v~~~~~s~  448 (501)
                      ..      ...+...+|+|
T Consensus       420 ~~------~~~~~~p~Wsp  432 (435)
T PRK05137        420 PT------PGDASDPAWSP  432 (435)
T ss_pred             cC------CCCccCcccCC
Confidence            21      22345556665

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.40  E-value=2.9e-11  Score=101.18  Aligned_cols=234  Identities=14%  Similarity=0.075  Sum_probs=156.9

Q ss_pred             EEeecCCeeeEEEEecccccccceecccCCc------ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C-
Q 010784          124 FSTQGSSIQNIKIDNFLSESYYRATLSDHKA------RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K-  195 (501)
Q Consensus       124 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~------~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~-  195 (501)
                      .++....+|.|.++..... .....|++-..      .-.++.|++             .+..++++..+|.+.+-+ + 
T Consensus        87 ~l~~a~a~G~i~~~r~~~~-~ss~~L~~ls~~ki~~~~~lslD~~~-------------~~~~i~vs~s~G~~~~v~~t~  152 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDED-ESSVHLRGLSSKKISVVEALSLDIST-------------SGTKIFVSDSRGSISGVYETE  152 (339)
T ss_pred             eeeeccccceEEEEeeccc-eeeeeecccchhhhhheeeeEEEeec-------------cCceEEEEcCCCcEEEEecce
Confidence            4455666788888775532 22222322111      123555665             778899999999999554 2 


Q ss_pred             C--ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeE
Q 010784          196 G--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFL  273 (501)
Q Consensus       196 ~--~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~  273 (501)
                      .  +.++..+.|+-+.....|+   ..+.+++++|+.|+.+..||++..+.    ......+.|...|.+|.-+|..+.+
T Consensus       153 ~~le~vq~wk~He~E~Wta~f~---~~~pnlvytGgDD~~l~~~D~R~p~~----~i~~n~kvH~~GV~SI~ss~~~~~~  225 (339)
T KOG0280|consen  153 MVLEKVQTWKVHEFEAWTAKFS---DKEPNLVYTGGDDGSLSCWDIRIPKT----FIWHNSKVHTSGVVSIYSSPPKPTY  225 (339)
T ss_pred             eeeeecccccccceeeeeeecc---cCCCceEEecCCCceEEEEEecCCcc----eeeecceeeecceEEEecCCCCCce
Confidence            2  2334788999999999997   45668999999999999999994332    1233366799999999999988999


Q ss_pred             EEEEeCCCeEEEEECCCC-ccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEE
Q 010784          274 LVTISKDSKVRVWDTSTS-SAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFS  352 (501)
Q Consensus       274 l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~  352 (501)
                      +++|+.|..|++||.+.. +++..                                            - .-.+.|..+.
T Consensus       226 I~TGsYDe~i~~~DtRnm~kPl~~--------------------------------------------~-~v~GGVWRi~  260 (339)
T KOG0280|consen  226 IATGSYDECIRVLDTRNMGKPLFK--------------------------------------------A-KVGGGVWRIK  260 (339)
T ss_pred             EEEeccccceeeeehhcccCcccc--------------------------------------------C-ccccceEEEE
Confidence            999999999999999854 22111                                            0 1246788888


Q ss_pred             EcCC--CcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec-CCCcEE-EEeCCCcc
Q 010784          353 IMPS--KSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR-DDLRIN-IWETDTGM  424 (501)
Q Consensus       353 ~~~~--~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs-~dg~i~-iwd~~~~~  424 (501)
                      .+|.  +.+++++...+.+|-+....... ........+.|.+-++.-.|+.. .++++++ .|+.++ +|-.-++.
T Consensus       261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  261 HHPEIFHRLLAACMHNGAKILDSSDKVLE-FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             ecchhhhHHHHHHHhcCceEEEecccccc-hheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence            8885  45666666777888887765422 01122344566666666667554 6677753 577644 77655543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.39  E-value=2.3e-11  Score=118.53  Aligned_cols=147  Identities=21%  Similarity=0.253  Sum_probs=122.8

Q ss_pred             eeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C
Q 010784          118 LDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K  195 (501)
Q Consensus       118 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~  195 (501)
                      ++++..++++|+.-+.+.+|++... ..-..+.||.+.|..+.|+.             +|.++++.|.|.++++|+  +
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~~d-n~p~~l~GHeG~iF~i~~s~-------------dg~~i~s~SdDRsiRlW~i~s  206 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPHED-NKPIRLKGHEGSIFSIVTSL-------------DGRYIASVSDDRSIRLWPIDS  206 (967)
T ss_pred             ccCcEEEEEeccccccEEEEecccc-CCcceecccCCceEEEEEcc-------------CCcEEEEEecCcceeeeeccc
Confidence            4578899999999999999998843 33336899999999999998             899999999999999998  4


Q ss_pred             Cceee-eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC-ceeEEEEeecCCeE
Q 010784          196 GSCQR-CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK-PIKLMSVAGHKSFL  273 (501)
Q Consensus       196 ~~~~~-~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~  273 (501)
                      .+... +.-+|.+.|..+.|.    ++  .+++++.|-+.++|+.+...       ...+.+|.. .|..++..+ +...
T Consensus       207 ~~~~~~~~fgHsaRvw~~~~~----~n--~i~t~gedctcrvW~~~~~~-------l~~y~~h~g~~iw~~~~~~-~~~~  272 (967)
T KOG0974|consen  207 REVLGCTGFGHSARVWACCFL----PN--RIITVGEDCTCRVWGVNGTQ-------LEVYDEHSGKGIWKIAVPI-GVII  272 (967)
T ss_pred             ccccCcccccccceeEEEEec----cc--eeEEeccceEEEEEecccce-------ehhhhhhhhcceeEEEEcC-CceE
Confidence            44443 566899999999996    43  99999999999999776543       457777754 688888886 7789


Q ss_pred             EEEEeCCCeEEEEECCCCc
Q 010784          274 LVTISKDSKVRVWDTSTSS  292 (501)
Q Consensus       274 l~s~s~dg~v~vwd~~~~~  292 (501)
                      .+|++.|+.+++||+....
T Consensus       273 ~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  273 KVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             EEeeccCcchhhhhhhccc
Confidence            9999999999999987654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.36  E-value=8.9e-10  Score=99.36  Aligned_cols=317  Identities=14%  Similarity=0.125  Sum_probs=199.7

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      ...++..+++||.|.++++... ..|.+|.-....++ ..+ .| ..|.-+.|+|             ++++|.+=+..+
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l-~~~-~~-~~V~~~~fSP-------------~~kYL~tw~~~p   93 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKL-VRF-RH-PDVKYLDFSP-------------NEKYLVTWSREP   93 (561)
T ss_pred             cCcchhheeecCcchheehhhc-cceEEccccchhhe-eee-ec-CCceecccCc-------------ccceeeeeccCC
Confidence            5567899999999999998765 45788987765322 222 23 3588888888             889999865433


Q ss_pred             ---------------ceEEec--CCceeeeccCCCCc--eE-EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784          189 ---------------SIRLWW--KGSCQRCFKGHNGP--VS-TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       189 ---------------~i~vwd--~~~~~~~~~~h~~~--v~-~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  248 (501)
                                     .+.+||  .+..+..+.....+  .. -+.|+    .+..+++-- ....++|+++ +...  ..
T Consensus        94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s----~~D~y~ARv-v~~sl~i~e~-t~n~--~~  165 (561)
T COG5354          94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFS----IDDKYVARV-VGSSLYIHEI-TDNI--EE  165 (561)
T ss_pred             ccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeee----ecchhhhhh-ccCeEEEEec-CCcc--cc
Confidence                           489999  77788888766555  44 56776    455555543 2347999997 3321  00


Q ss_pred             cceeeccCCCCceeEEEEeec-CCeEEEE-----EeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEE
Q 010784          249 ALKATLYGHEKPIKLMSVAGH-KSFLLVT-----ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA  322 (501)
Q Consensus       249 ~~~~~~~~~~~~v~~l~~~~~-~~~~l~s-----~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (501)
                      .....++  ...|....++|. +...|+.     .+.++.+++|.+..+..+.....   +...+..+.....++.+++.
T Consensus       166 ~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l---fk~~~~qLkW~~~g~~ll~l  240 (561)
T COG5354         166 HPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL---FKVSGVQLKWQVLGKYLLVL  240 (561)
T ss_pred             Cchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee---EeecccEEEEecCCceEEEE
Confidence            0111222  356777888875 3333443     35678899999886554332211   12222222222222222221


Q ss_pred             e------------CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc--CCc-EEEEecCCCCCCCCCCCccc
Q 010784          323 S------------GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG--IGK-AMTWDIRRSQDAVKPQPMAE  387 (501)
Q Consensus       323 ~------------~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~  387 (501)
                      .            .+.+++++++........ .-.++|...+|.|.++.+++.+  ... +.++|++..         ..
T Consensus       241 ~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---------l~  310 (561)
T COG5354         241 VMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---------LR  310 (561)
T ss_pred             EEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc---------eE
Confidence            1            126788888744333332 4589999999999977766655  555 999999874         22


Q ss_pred             ccCcccCeEEEEecCC-eEEEEecC---CCcEEEEeCCCccccc-ccccCCCCCCCcceeeeEeeccccEEEEeecC---
Q 010784          388 LDGHVGSVTQLHMDPY-KIVTGGRD---DLRINIWETDTGMLAN-SLLCNYPEEADISTGCSAMAVSGCRIVTASYG---  459 (501)
Q Consensus       388 ~~~h~~~v~~l~~~~~-~~l~~gs~---dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d---  459 (501)
                      +......=+.+.|+|. ++++.++-   .|.+.+||........ .+.       ......+.|+|||+++.+....   
T Consensus       311 ~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-------~~n~s~~~wspd~qF~~~~~ts~k~  383 (561)
T COG5354         311 FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-------GLNTSYCDWSPDGQFYDTDTTSEKL  383 (561)
T ss_pred             EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee-------cCCceEeeccCCceEEEecCCCccc
Confidence            3334555677889999 55555333   5789999987644433 552       2234567899999999887543   


Q ss_pred             -CCceEEEeeccCC
Q 010784          460 -EPGLLQFRDFSNA  472 (501)
Q Consensus       460 -~~g~i~~w~~~~~  472 (501)
                       .|..|.+|++...
T Consensus       384 ~~Dn~i~l~~v~g~  397 (561)
T COG5354         384 RVDNSIKLWDVYGA  397 (561)
T ss_pred             ccCcceEEEEecCc
Confidence             5788999997643

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.1e-09  Score=99.81  Aligned_cols=315  Identities=15%  Similarity=0.115  Sum_probs=193.0

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC-----
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-----  187 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----  187 (501)
                      -+.+.|||.|.||+|--..| |.+|--.+ ...++.+ .|++ |.-+.|||             +.++|+|-+..     
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~-f~r~~RF-~Hp~-Vq~idfSP-------------~EkYLVT~s~~p~~~~  275 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGES-FDRIQRF-YHPG-VQFIDFSP-------------NEKYLVTYSPEPIIVE  275 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCcc-HHHHHhc-cCCC-ceeeecCC-------------ccceEEEecCCccccC
Confidence            47889999999999877644 67887554 2333443 4554 88889999             88999986642     


Q ss_pred             ------CceEEec--CCceeeeccCC--CCceE-EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          188 ------HSIRLWW--KGSCQRCFKGH--NGPVS-TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       188 ------g~i~vwd--~~~~~~~~~~h--~~~v~-~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                            ..++|||  +|...+.|...  ...+. -..||    .+++++|--.. .+|.|++.....      ++..-.-
T Consensus       276 ~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS----~DdKy~Arm~~-~sisIyEtpsf~------lld~Ksl  344 (698)
T KOG2314|consen  276 EDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS----HDDKYFARMTG-NSISIYETPSFM------LLDKKSL  344 (698)
T ss_pred             cccCCCceEEEEEccccchhcceeccCCCccccceEEec----cCCceeEEecc-ceEEEEecCcee------eeccccc
Confidence                  4689999  88887777652  22333 35776    78889887665 478899877643      1222222


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEE--e------
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA--S------  323 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------  323 (501)
                      .-..|....|+| .+++|+-=+..     ..+.+..+.+++.++.....   ....  ..+.+..++-+++  .      
T Consensus       345 ki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf---nVsD--ckLhWQk~gdyLcvkvdR~tK~  418 (698)
T KOG2314|consen  345 KISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF---NVSD--CKLHWQKSGDYLCVKVDRHTKS  418 (698)
T ss_pred             CCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccce---eeec--cEEEeccCCcEEEEEEEeeccc
Confidence            345678888998 45555543221     23455555554443322111   1111  1122222222221  1      


Q ss_pred             -----CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC---Cc-EEEEecCCCCCCCCCCCcccccCcccC
Q 010784          324 -----GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI---GK-AMTWDIRRSQDAVKPQPMAELDGHVGS  394 (501)
Q Consensus       324 -----~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~  394 (501)
                           -..+.++.++........-.-...|...+|-|.|..+++-+.   .. +.+|.+.+....  +..+..+.  ...
T Consensus       419 ~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~--~~lVk~~d--k~~  494 (698)
T KOG2314|consen  419 KVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK--PSLVKELD--KKF  494 (698)
T ss_pred             cccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc--hhhhhhhc--ccc
Confidence                 124666777665544333334678899999999888776652   22 999988842221  34455554  356


Q ss_pred             eEEEEecCC-eEEEEe---cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC----CCceEEE
Q 010784          395 VTQLHMDPY-KIVTGG---RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG----EPGLLQF  466 (501)
Q Consensus       395 v~~l~~~~~-~~l~~g---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d----~~g~i~~  466 (501)
                      .+.+.|+|. ++++.+   |..|.+.++|+....+..+-.     ......+.+.|.|.|+|++++++.    .|.--++
T Consensus       495 ~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-----~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri  569 (698)
T KOG2314|consen  495 ANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-----PEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRI  569 (698)
T ss_pred             cceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-----ccccccccceECCCCCEEEEeeehhhhccccceEE
Confidence            788999999 665543   467899999987533332221     112345678999999999998853    2334456


Q ss_pred             eecc
Q 010784          467 RDFS  470 (501)
Q Consensus       467 w~~~  470 (501)
                      |++.
T Consensus       570 ~tfq  573 (698)
T KOG2314|consen  570 FTFQ  573 (698)
T ss_pred             EEee
Confidence            6654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.34  E-value=7.4e-11  Score=99.05  Aligned_cols=110  Identities=8%  Similarity=0.134  Sum_probs=84.5

Q ss_pred             CCcEEEEEEcCCCcEEEEEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC---CCcEEE
Q 010784          345 KPILHSFSIMPSKSLICTGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD---DLRINI  417 (501)
Q Consensus       345 ~~~v~~v~~~~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~---dg~i~i  417 (501)
                      .++|.+++|+|+|+.+++..  .+. |.+||++ .+      .+..+.  ...++.+.|+|+ ++++.++.   .|.|.+
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~------~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~  129 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GK------KIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEF  129 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-cc------EeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEE
Confidence            45799999999998876543  455 9999997 22      234553  567889999999 77776543   467999


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC----CCceEEEeecc
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG----EPGLLQFRDFS  470 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d----~~g~i~~w~~~  470 (501)
                      ||+++.+.+.++.       ...++.++|+|||++|++++..    .|+.+++|++.
T Consensus       130 wd~~~~~~i~~~~-------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  130 WDVRKKKKISTFE-------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EECCCCEEeeccc-------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            9999888887773       2346899999999999998753    36778888875

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=5.8e-11  Score=115.78  Aligned_cols=189  Identities=17%  Similarity=0.264  Sum_probs=142.0

Q ss_pred             eCCcEEEeecCCeeeEEEEecccccccceecccCCcc--eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C
Q 010784          119 DNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKAR--ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K  195 (501)
Q Consensus       119 ~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~--V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~  195 (501)
                      .-+...++.+..+..+-+||...+ .....+. +...  ..++...          .++++.-++++|+.-+.|.+|+ .
T Consensus        96 ~~e~k~i~l~~~~ns~~i~d~~~~-~~~~~i~-~~er~~l~~~~~~----------g~s~~~~~i~~gsv~~~iivW~~~  163 (967)
T KOG0974|consen   96 FEENKKIALVTSRNSLLIRDSKNS-SVLSKIQ-SDERCTLYSSLII----------GDSAEELYIASGSVFGEIIVWKPH  163 (967)
T ss_pred             hhhcceEEEEEcCceEEEEecccC-ceehhcC-CCceEEEEeEEEE----------eccCcEEEEEeccccccEEEEecc
Confidence            345567777778889999998864 3333332 2222  1121111          1122678999999999999998 2


Q ss_pred             -CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEE
Q 010784          196 -GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLL  274 (501)
Q Consensus       196 -~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  274 (501)
                       .+.-..+.+|++.|.++.|+    .+|.++++.|+|.++|+|++++.+.     ......+|+..|..+.+.|+   .+
T Consensus       164 ~dn~p~~l~GHeG~iF~i~~s----~dg~~i~s~SdDRsiRlW~i~s~~~-----~~~~~fgHsaRvw~~~~~~n---~i  231 (967)
T KOG0974|consen  164 EDNKPIRLKGHEGSIFSIVTS----LDGRYIASVSDDRSIRLWPIDSREV-----LGCTGFGHSARVWACCFLPN---RI  231 (967)
T ss_pred             ccCCcceecccCCceEEEEEc----cCCcEEEEEecCcceeeeecccccc-----cCcccccccceeEEEEeccc---ee
Confidence             22222688999999999997    8999999999999999999999875     44577889999999999873   89


Q ss_pred             EEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC-CCcEEEEEE
Q 010784          275 VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC-KPILHSFSI  353 (501)
Q Consensus       275 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~v~~  353 (501)
                      ++++.|.+.++|+....+.                                             ..+..| ...+..++.
T Consensus       232 ~t~gedctcrvW~~~~~~l---------------------------------------------~~y~~h~g~~iw~~~~  266 (967)
T KOG0974|consen  232 ITVGEDCTCRVWGVNGTQL---------------------------------------------EVYDEHSGKGIWKIAV  266 (967)
T ss_pred             EEeccceEEEEEeccccee---------------------------------------------hhhhhhhhcceeEEEE
Confidence            9999999999996654321                                             234445 456889999


Q ss_pred             cCCCcEEEEEcCCc-EEEEecCCC
Q 010784          354 MPSKSLICTGGIGK-AMTWDIRRS  376 (501)
Q Consensus       354 ~~~~~~l~~~~~d~-i~iwd~~~~  376 (501)
                      .++...++++++|+ +++||+...
T Consensus       267 ~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  267 PIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cCCceEEEeeccCcchhhhhhhcc
Confidence            99999999999888 999998753

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.33  E-value=7.7e-10  Score=106.59  Aligned_cols=213  Identities=15%  Similarity=0.079  Sum_probs=133.2

Q ss_pred             CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---CcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---ATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      ..|.++| .+...+.+..+...+....|+    ++|++|+.+..+   ..|++||+.++..       ..+..+...+..
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~S----pdg~~la~~~~~~~~~~i~v~d~~~g~~-------~~~~~~~~~~~~  238 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWS----PDGQKLAYVSFESGKPEIYVQDLATGQR-------EKVASFPGMNGA  238 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCC----CCCCEEEEEEcCCCCcEEEEEECCCCCE-------EEeecCCCCccc
Confidence            3577777 555566666677778888887    899998877644   4799999988652       233344555667


Q ss_pred             EEEeecCCeEEEEEeCCC--eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          264 MSVAGHKSFLLVTISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      ++|+|++..++++.+.++  .|++||+.+++..                                             .+
T Consensus       239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---------------------------------------------~l  273 (417)
T TIGR02800       239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---------------------------------------------RL  273 (417)
T ss_pred             eEECCCCCEEEEEECCCCCccEEEEECCCCCEE---------------------------------------------EC
Confidence            899984334445555444  4777777665321                                             11


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcC-Cc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC---
Q 010784          342 AICKPILHSFSIMPSKSLICTGGI-GK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL---  413 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg---  413 (501)
                      ..+........|+|+|+.|+..++ ++   |+++|+.+++.       ..+..+...+....|+|+ +.++.++.++   
T Consensus       274 ~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-------~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~  346 (417)
T TIGR02800       274 TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-------RRLTFRGGYNASPSWSPDGDLIAFVHREGGGF  346 (417)
T ss_pred             CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-------EEeecCCCCccCeEECCCCCEEEEEEccCCce
Confidence            122333345689999988776553 22   77788776542       233334456678899998 6555555555   


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCC-ceEEEeecc
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP-GLLQFRDFS  470 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-g~i~~w~~~  470 (501)
                      .|.+||+.++... .+..      ........|+|||++|+.++.+.. ..+.+.+..
T Consensus       347 ~i~~~d~~~~~~~-~l~~------~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       347 NIAVMDLDGGGER-VLTD------TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EEEEEeCCCCCeE-EccC------CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            7899998875432 2311      112345689999999988875321 234454433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.31  E-value=1.8e-11  Score=125.20  Aligned_cols=188  Identities=16%  Similarity=0.219  Sum_probs=147.8

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      +.++.-+|...+.+||+.||.+++|.+..+......-..-...|+.+.|+.             +|+.+..+..||.+.+
T Consensus      2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-------------qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-------------QGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred             eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-------------cCCceeeeccCCceee
Confidence            677777899999999999999999999886443333333448899999988             8999999999999999


Q ss_pred             ec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee---CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784          193 WW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG---EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG  268 (501)
Q Consensus       193 wd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  268 (501)
                      |. ..+.....+.|....+.+.|.      +..+++++   .++.+.+||..-...   .-++.  ..|.+.++++++.|
T Consensus      2278 ~q~~pk~~~s~qchnk~~~Df~Fi------~s~~~tag~s~d~~n~~lwDtl~~~~---~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2278 WQASPKPYTSWQCHNKALSDFRFI------GSLLATAGRSSDNRNVCLWDTLLPPM---NSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred             cccCCcceeccccCCccccceeee------ehhhhccccCCCCCcccchhcccCcc---cceee--eecCCCceEEEEcC
Confidence            99 666777788999999999985      26677664   578999999765432   11333  78999999999998


Q ss_pred             cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784          269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL  348 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v  348 (501)
                       ..+.|++|+.+|.|++||++..+....+                                            +.     
T Consensus      2347 -~~qllisggr~G~v~l~D~rqrql~h~~--------------------------------------------~~----- 2376 (2439)
T KOG1064|consen 2347 -KHQLLISGGRKGEVCLFDIRQRQLRHTF--------------------------------------------QA----- 2376 (2439)
T ss_pred             -cceEEEecCCcCcEEEeehHHHHHHHHh--------------------------------------------hh-----
Confidence             7889999999999999999987543221                                            11     


Q ss_pred             EEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          349 HSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       349 ~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                          +. ...++++|+..+ |+||++.....+
T Consensus      2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             ----hh-hhheeeccCcccceEEEEccccchh
Confidence                33 566888888777 999999886544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.31  E-value=2e-10  Score=96.48  Aligned_cols=148  Identities=14%  Similarity=0.195  Sum_probs=103.6

Q ss_pred             eEEeeCCcEEEeecCC----------eeeEEEEecccccccceeccc-CCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          115 HILLDNNDIFSTQGSS----------IQNIKIDNFLSESYYRATLSD-HKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       115 ~~~~~~~~~~~~~g~~----------d~~i~vw~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      .+.|+++|.+|+.-..          -+...+|.++........+.- ..++|.+++|+|             +|+.|+.
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-------------~g~~fav   76 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-------------NGNEFAV   76 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-------------CCCEEEE
Confidence            4567777766653322          244556665332344444433 345799999999             6777644


Q ss_pred             --eeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC---CCcEEEEeccCCCccccccceeeccCC
Q 010784          184 --SSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE---DATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       184 --~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                        |..++.|.+|| .++.+..+.  ...+..+.|+    |+|++|++|+.   .|.|.+||.++.+      .+.... |
T Consensus        77 i~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~ws----P~G~~l~~~g~~n~~G~l~~wd~~~~~------~i~~~~-~  143 (194)
T PF08662_consen   77 IYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWS----PDGRFLVLAGFGNLNGDLEFWDVRKKK------KISTFE-H  143 (194)
T ss_pred             EEccCCcccEEEcCcccEeEeec--CCCceEEEEC----CCCCEEEEEEccCCCcEEEEEECCCCE------Eeeccc-c
Confidence              55678999999 766666664  5678899997    89999999875   4679999999655      244433 3


Q ss_pred             CCceeEEEEeecCCeEEEEEeC------CCeEEEEECCC
Q 010784          258 EKPIKLMSVAGHKSFLLVTISK------DSKVRVWDTST  290 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s~------dg~v~vwd~~~  290 (501)
                       ..++.++|+| ++++|++++.      |..++||+...
T Consensus       144 -~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  144 -SDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             -CcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence             3478999998 7888888764      78899999854

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.28  E-value=1.1e-08  Score=97.06  Aligned_cols=296  Identities=9%  Similarity=-0.012  Sum_probs=167.2

Q ss_pred             cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee
Q 010784          122 DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ  199 (501)
Q Consensus       122 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~  199 (501)
                      +..+.+++.++.+..+|..+| +.+....-..........               ++..++.++.+|.+..+|  +|+.+
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~p~v---------------~~~~v~v~~~~g~l~ald~~tG~~~  128 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETG-KRLWRVDLDERLSGGVGA---------------DGGLVFVGTEKGEVIALDAEDGKEL  128 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCC-cEeeeecCCCCcccceEE---------------cCCEEEEEcCCCEEEEEECCCCcEe
Confidence            345666677789999998886 555443332221112221               457788888899999999  67766


Q ss_pred             eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce-----eEEEEeecCCeEE
Q 010784          200 RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI-----KLMSVAGHKSFLL  274 (501)
Q Consensus       200 ~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~~l  274 (501)
                      -..... +.+.+.-.     -.+..++.++.+|.|..+|.++++.      +.........+     ....+.  + ..+
T Consensus       129 W~~~~~-~~~~~~p~-----v~~~~v~v~~~~g~l~a~d~~tG~~------~W~~~~~~~~~~~~~~~sp~~~--~-~~v  193 (377)
T TIGR03300       129 WRAKLS-SEVLSPPL-----VANGLVVVRTNDGRLTALDAATGER------LWTYSRVTPALTLRGSASPVIA--D-GGV  193 (377)
T ss_pred             eeeccC-ceeecCCE-----EECCEEEEECCCCeEEEEEcCCCce------eeEEccCCCceeecCCCCCEEE--C-CEE
Confidence            554422 22222111     1245677778899999999998864      22222211111     111122  3 367


Q ss_pred             EEEeCCCeEEEEECCCCccccceecccceecC------CCceeeecCCCeEEEEe-CCcEEEEEcCCCceEeeeccCCCc
Q 010784          275 VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVP------GVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVMTPAICKPI  347 (501)
Q Consensus       275 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~  347 (501)
                      +.+..+|.+..+|.++++.+............      .........++.+++.. ++.+..+|.++++.+...... . 
T Consensus       194 ~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-  271 (377)
T TIGR03300       194 LVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-  271 (377)
T ss_pred             EEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-C-
Confidence            77888899999999998754332111000000      00001112344555554 468999999999887765521 1 


Q ss_pred             EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecCCeEEEEecCCCcEEEEeCCCccc
Q 010784          348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGML  425 (501)
Q Consensus       348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~  425 (501)
                      ......  .+..++.++.++ +..+|..+++.+      ...... .....+.....+ .+..++.+|.|+++|..+|+.
T Consensus       272 ~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~------W~~~~~~~~~~ssp~i~g~-~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       272 YQGPAV--DDNRLYVTDADGVVVALDRRSGSEL------WKNDELKYRQLTAPAVVGG-YLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             ccCceE--eCCEEEEECCCCeEEEEECCCCcEE------EccccccCCccccCEEECC-EEEEEeCCCEEEEEECCCCCE
Confidence            112222  455666667666 999999987654      222111 111222223333 444456999999999999999


Q ss_pred             ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784          426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR  467 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w  467 (501)
                      +.++..+     ...+..--...++ .|+.++  .||.|..+
T Consensus       343 ~~~~~~~-----~~~~~~sp~~~~~-~l~v~~--~dG~l~~~  376 (377)
T TIGR03300       343 VARLKTD-----GSGIASPPVVVGD-GLLVQT--RDGDLYAF  376 (377)
T ss_pred             EEEEEcC-----CCccccCCEEECC-EEEEEe--CCceEEEe
Confidence            9888432     2122221122244 466776  56888765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=2.7e-11  Score=109.92  Aligned_cols=287  Identities=14%  Similarity=0.192  Sum_probs=175.2

Q ss_pred             ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---------CCceeeeccCCCCceEEEEeee
Q 010784          146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---------KGSCQRCFKGHNGPVSTLSDKL  216 (501)
Q Consensus       146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---------~~~~~~~~~~h~~~v~~l~~s~  216 (501)
                      +..+.||+..|..++-..             +.+-+++++.|++|++|.         +..|..++..|+.+|.++.|. 
T Consensus       728 L~nf~GH~~~iRai~Aid-------------NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-  793 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAID-------------NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-  793 (1034)
T ss_pred             eecccCcHHHhHHHHhcc-------------cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee-
Confidence            456789999999988776             789999999999999995         334677889999999999996 


Q ss_pred             cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc-CCCCceeEEEEeec-CCeEEEEE-eCCCeEEEEECCCCcc
Q 010784          217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGH-KSFLLVTI-SKDSKVRVWDTSTSSA  293 (501)
Q Consensus       217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~-~~~~l~s~-s~dg~v~vwd~~~~~~  293 (501)
                         .+.+++++  .||-|.+||.--+..     +.+... ...+.+..+...++ +..++++| +...+|+++|.+....
T Consensus       794 ---~~lr~i~S--cD~giHlWDPFigr~-----Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~  863 (1034)
T KOG4190|consen  794 ---ADLRSIAS--CDGGIHLWDPFIGRL-----LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW  863 (1034)
T ss_pred             ---eccceeee--ccCcceeecccccch-----hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc
Confidence               66667765  578999999876653     111221 12223333333333 44455554 7889999999999877


Q ss_pred             ccceecccceecCCCceeeecCCCeEEEE---eCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EE
Q 010784          294 VRSSCCVGMTSVPGVPVDMKCHESMLYIA---SGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AM  369 (501)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~  369 (501)
                      ......-....+.+...++...+.+..++   +.+.+.+.|.++++.+..++..+-....++- |..+.++...-|. +.
T Consensus       864 ~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHsla  942 (1034)
T KOG4190|consen  864 TCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLA  942 (1034)
T ss_pred             eeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeE
Confidence            65554443334555566666666655554   3468999999999998877765555544543 4555566555455 66


Q ss_pred             E-EecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCC-cccccccccCCCCCCCcceeeeEee
Q 010784          370 T-WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDT-GMLANSLLCNYPEEADISTGCSAMA  447 (501)
Q Consensus       370 i-wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s  447 (501)
                      + |....+...      .+.+....+..-+. +-..-+++......+.+|--.. .....++..-.+....+..++++--
T Consensus       943 VnWhaldgimh------~q~kpppepahflq-svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~L 1015 (1034)
T KOG4190|consen  943 VNWHALDGIMH------LQDKPPPEPAHFLQ-SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPL 1015 (1034)
T ss_pred             eeehhcCCeee------eccCCCCcchhhhh-ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeec
Confidence            6 765554321      11111111111111 0012233333455677774221 1111111111123334567788888


Q ss_pred             ccccEEEEeecCCCceEEE
Q 010784          448 VSGCRIVTASYGEPGLLQF  466 (501)
Q Consensus       448 ~~g~~l~s~~~d~~g~i~~  466 (501)
                      |-+.-+..|.  +.|.|.+
T Consensus      1016 PLN~afLaGn--e~G~IaL 1032 (1034)
T KOG4190|consen 1016 PLNCAFLAGN--EHGAIAL 1032 (1034)
T ss_pred             cccchhhccC--CCCceee
Confidence            8777777777  6688765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.26  E-value=7.9e-11  Score=120.69  Aligned_cols=197  Identities=21%  Similarity=0.313  Sum_probs=152.5

Q ss_pred             ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeecc-CCCCceEEEEeeecCCCCCCEEE
Q 010784          150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILA  226 (501)
Q Consensus       150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~  226 (501)
                      +.|-..|.++.-+|             ...+.+||+.||.|++|.  .+..+..++ .....|+.+.|+    ..|+.+.
T Consensus      2205 k~~v~~v~r~~sHp-------------~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~----~qGnk~~ 2267 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHP-------------SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN----HQGNKFG 2267 (2439)
T ss_pred             ecccCceeeecCCC-------------CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc----ccCCcee
Confidence            34556677776666             678999999999999998  555555443 234889999996    8899999


Q ss_pred             EeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe---CCCeEEEEECCCCccccceecccce
Q 010784          227 SGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS---KDSKVRVWDTSTSSAVRSSCCVGMT  303 (501)
Q Consensus       227 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~  303 (501)
                      .+..||.+.+|.....       +....+.|+.....++|..   ..+++++   .++.+.+||..-...          
T Consensus      2268 i~d~dg~l~l~q~~pk-------~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~---------- 2327 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASPK-------PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM---------- 2327 (2439)
T ss_pred             eeccCCceeecccCCc-------ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcc----------
Confidence            9999999999999843       4677788999999888873   4666664   568899999654311          


Q ss_pred             ecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784          304 SVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKP  382 (501)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~  382 (501)
                                                     ...+.  ..|.+.++++++-|..++|++|+.+| |++||++..+..   
T Consensus      2328 -------------------------------~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~--- 2371 (2439)
T KOG1064|consen 2328 -------------------------------NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR--- 2371 (2439)
T ss_pred             -------------------------------cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH---
Confidence                                           01112  56899999999999999999999999 999999985543   


Q ss_pred             CCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCccccccccc
Q 010784          383 QPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLC  431 (501)
Q Consensus       383 ~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~  431 (501)
                         ++++.         ++...++++|+..|.++||++.....+.++..
T Consensus      2372 ---h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2372 ---HTFQA---------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             ---HHhhh---------hhhhheeeccCcccceEEEEccccchhhcCch
Confidence               44443         45337889999999999999999888888853

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=6.7e-09  Score=100.16  Aligned_cols=215  Identities=11%  Similarity=0.042  Sum_probs=129.3

Q ss_pred             ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---CcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      .|.++| .+...+.+..+...+....|+    |+|+.|+..+.+   ..|.+||+.++..       ..+....+.+...
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wS----pDG~~la~~s~~~~~~~l~~~~l~~g~~-------~~l~~~~g~~~~~  248 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWS----PDGKRIAYVSFEQKRPRIFVQNLDTGRR-------EQITNFEGLNGAP  248 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeEC----CCCCEEEEEEcCCCCCEEEEEECCCCCE-------EEccCCCCCcCCe
Confidence            466777 565566666677888999997    899988766543   3688999987753       2233333344567


Q ss_pred             EEeecCCeEEE-EEeCCC--eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          265 SVAGHKSFLLV-TISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       265 ~~~~~~~~~l~-s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      .|+| +++.|+ +.+.+|  .|.+||+.+++..                                             .+
T Consensus       249 ~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~---------------------------------------------~l  282 (430)
T PRK00178        249 AWSP-DGSKLAFVLSKDGNPEIYVMDLASRQLS---------------------------------------------RV  282 (430)
T ss_pred             EECC-CCCEEEEEEccCCCceEEEEECCCCCeE---------------------------------------------Ec
Confidence            8998 555554 555555  4677777765321                                             11


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcC-C--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec-CCC--
Q 010784          342 AICKPILHSFSIMPSKSLICTGGI-G--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR-DDL--  413 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~-d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs-~dg--  413 (501)
                      ..+........|+|||+.++..++ +  . |+++|+.+++..       .+...........|+|+ +.++..+ .++  
T Consensus       283 t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-------~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~  355 (430)
T PRK00178        283 TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-------RVTFVGNYNARPRLSADGKTLVMVHRQDGNF  355 (430)
T ss_pred             ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-------EeecCCCCccceEECCCCCEEEEEEccCCce
Confidence            122334456789999987776653 2  2 777888765421       11111122345689999 4444433 333  


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC-CCceEEEeeccCCcc
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSNATC  474 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~~~~~  474 (501)
                      .|.++|+.+++. ..+..      ........|+|||++|+..+.+ ....|.+.++.....
T Consensus       356 ~l~~~dl~tg~~-~~lt~------~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~  410 (430)
T PRK00178        356 HVAAQDLQRGSV-RILTD------TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR  410 (430)
T ss_pred             EEEEEECCCCCE-EEccC------CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            588899988764 33321      1112245899999999887642 223466666654433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=1.1e-09  Score=102.84  Aligned_cols=287  Identities=12%  Similarity=0.092  Sum_probs=189.8

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccc--------------cccceecccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSE--------------SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE  178 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~  178 (501)
                      ..|+.|+.+..|+|+|+.||.++|-.+.+.              ...-.++.||.+.|..+.|+.             +.
T Consensus        17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-------------~~   83 (1189)
T KOG2041|consen   17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-------------NN   83 (1189)
T ss_pred             EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-------------cc
Confidence            689999999999999999999999987542              123467889999999999998             67


Q ss_pred             cEEEEeeCCCceEEec--CCceeee-c-cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          179 NVLVTSSCDHSIRLWW--KGSCQRC-F-KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd--~~~~~~~-~-~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      +.|-|...+|.|.||-  .+.-... + ....+.|.+|+|.    .+|..++....||.|.+=.++.+..     .-..+
T Consensus        84 QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn----~dG~kIcIvYeDGavIVGsvdGNRI-----wgKeL  154 (1189)
T KOG2041|consen   84 QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN----LDGTKICIVYEDGAVIVGSVDGNRI-----WGKEL  154 (1189)
T ss_pred             ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc----CCCcEEEEEEccCCEEEEeecccee-----cchhc
Confidence            8999999999999996  3332211 1 2356678899995    8999999999999998888776542     12222


Q ss_pred             cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                      ++  .....+.|++ +...++.+-..|.+.++|....-.. ......                 .+-.++          
T Consensus       155 kg--~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~-Kl~~~c-----------------~Vn~tg----------  203 (1189)
T KOG2041|consen  155 KG--QLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFER-KLEKDC-----------------EVNGTG----------  203 (1189)
T ss_pred             ch--heccceeecc-cHHHHHhhhcCCcEEEecccccHHH-hhhhce-----------------EEeeee----------
Confidence            22  2233677887 6667777888899999997643111 000000                 000000          


Q ss_pred             CceEeeeccCCCcEEEEEE--------cCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e
Q 010784          335 MQKVMTPAICKPILHSFSI--------MPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K  404 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~--------~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~  404 (501)
                           .+......|..+.|        -|+.-.++.+-+++ +.|-.-.+...     |+..-  ..-.+....|+++ .
T Consensus       204 -----~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-----Pvv~d--tgm~~vgakWnh~G~  271 (1189)
T KOG2041|consen  204 -----IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-----PVVVD--TGMKIVGAKWNHNGA  271 (1189)
T ss_pred             -----eecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-----CeEEe--cccEeecceecCCCc
Confidence                 00000111222222        34666777777766 77765554432     22221  2356788899999 7


Q ss_pred             EEEEecCCC---------cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          405 IVTGGRDDL---------RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       405 ~l~~gs~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      +++.++.|.         .|+++.. -|+.+.++     +.....|++++|-..|-.++.+   -|+.|.+=++.+.-
T Consensus       272 vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtl-----kvpg~~It~lsWEg~gLriA~A---vdsfiyfanIRP~y  340 (1189)
T KOG2041|consen  272 VLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTL-----KVPGSCITGLSWEGTGLRIAIA---VDSFIYFANIRPEY  340 (1189)
T ss_pred             EEEEccCcccccCccccceEEEecc-chhheEEE-----ecCCceeeeeEEcCCceEEEEE---ecceEEEEeecccc
Confidence            777765532         4666654 36777777     4457789999999888888877   34777776666543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.24  E-value=2.4e-10  Score=96.58  Aligned_cols=249  Identities=14%  Similarity=0.149  Sum_probs=154.0

Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC------------CceeEEEEeec-CCe
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE------------KPIKLMSVAGH-KSF  272 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~v~~l~~~~~-~~~  272 (501)
                      ...|+++.|    +..|.+|++|...|.|.+|.-..... -+......+++|.            ..|..|.|... +..
T Consensus        26 ad~ItaVef----d~tg~YlatGDkgGRVvlfer~~s~~-ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~  100 (460)
T COG5170          26 ADKITAVEF----DETGLYLATGDKGGRVVLFEREKSYG-CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN  100 (460)
T ss_pred             cceeeEEEe----ccccceEeecCCCceEEEeecccccc-cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence            457899999    48899999999999999997654331 1122333455554            34667777643 345


Q ss_pred             EEEEEeCCCeEEEEECCCCccc--cceecccce--ecCCCceee------ecCCCeEEEEeCCcEEEEEcCCCceEe-ee
Q 010784          273 LLVTISKDSKVRVWDTSTSSAV--RSSCCVGMT--SVPGVPVDM------KCHESMLYIASGSSVVTIDLRTMQKVM-TP  341 (501)
Q Consensus       273 ~l~s~s~dg~v~vwd~~~~~~~--~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~  341 (501)
                      .++..+.|.+|++|-+......  .........  ...+...+.      ..+....+++.            .+.+ ..
T Consensus       101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa------------~p~rvya  168 (460)
T COG5170         101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA------------KPCRVYA  168 (460)
T ss_pred             eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEe------------ccceecc
Confidence            7778889999999998765321  111110000  111111110      11111111111            1111 12


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCc-----ccCeEEEEecCC--eEEEEecCCCc
Q 010784          342 AICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH-----VGSVTQLHMDPY--KIVTGGRDDLR  414 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~--~~l~~gs~dg~  414 (501)
                      ..|...+.++.+..|.+.++++.+=+|.+|++......   --+..++.|     ...|++..|+|.  .++.-++..|.
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~s---FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~  245 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGS---FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE  245 (460)
T ss_pred             ccceeEeeeeeecCchheeeeccceeeeeccccccCCc---eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence            45788899999999999998887666999998765432   112233333     356889999998  55555678999


Q ss_pred             EEEEeCCCcc------cccccccCC-----CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcccee
Q 010784          415 INIWETDTGM------LANSLLCNY-----PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL  477 (501)
Q Consensus       415 i~iwd~~~~~------~~~~~~~~~-----~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~  477 (501)
                      |++-|++...      .+.......     -.+....|..+.|+++|++|++-.+   -+|++||+.....++.
T Consensus       246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---ltvkiwDvnm~k~pik  316 (460)
T COG5170         246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---LTVKIWDVNMAKNPIK  316 (460)
T ss_pred             EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---ceEEEEecccccCCce
Confidence            9999998421      111110000     0123456888999999999999866   5999999887666543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.23  E-value=3.8e-10  Score=95.36  Aligned_cols=258  Identities=15%  Similarity=0.212  Sum_probs=170.6

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccc----cccceecccCC------------cceeEEEeeccCcCcccccCCC
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSE----SYYRATLSDHK------------ARITCMRLFPLHETSLFRSEPQ  175 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~----~~~~~~~~~h~------------~~V~~~~~~~~~~~~~~~~~~~  175 (501)
                      .|+++.|+..|.|+++|...|.|.++.-+..    .+....+++|.            ..|..+.|..++          
T Consensus        28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t----------   97 (460)
T COG5170          28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT----------   97 (460)
T ss_pred             eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC----------
Confidence            4899999999999999999999999986543    23444567774            468999998743          


Q ss_pred             CcCcEEEEeeCCCceEEec---C------------------Cceee-----------------------ec-cCCCCceE
Q 010784          176 RTENVLVTSSCDHSIRLWW---K------------------GSCQR-----------------------CF-KGHNGPVS  210 (501)
Q Consensus       176 ~~~~~l~s~~~dg~i~vwd---~------------------~~~~~-----------------------~~-~~h~~~v~  210 (501)
                       ..+.++..+.|.+|++|.   .                  +..+.                       .. ..|.-.|.
T Consensus        98 -~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN  176 (460)
T COG5170          98 -GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN  176 (460)
T ss_pred             -CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence             345667777899999995   1                  10000                       01 24666788


Q ss_pred             EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC-----CceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784          211 TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE-----KPIKLMSVAGHKSFLLVTISKDSKVRV  285 (501)
Q Consensus       211 ~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~~l~s~s~dg~v~v  285 (501)
                      ++.|.    .+.+.++++ .|=.|.+|+++-....   -.+..++.|.     .-|++..|+|...+.+...+..|.|++
T Consensus       177 SiS~N----sD~et~lSa-DdLrINLWnl~i~D~s---FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         177 SISFN----SDKETLLSA-DDLRINLWNLEIIDGS---FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             eeeec----Cchheeeec-cceeeeeccccccCCc---eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            88884    677777765 5778999998764431   1233344443     357888999987788888889999999


Q ss_pred             EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC
Q 010784          286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI  365 (501)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  365 (501)
                      -|+++...-............                            +-...-+..-...|..+.|+++|+++++-+.
T Consensus       249 ~DlRq~alcdn~~klfe~~~D----------------------------~v~~~ff~eivsSISD~kFs~ngryIlsRdy  300 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTID----------------------------GVDVDFFEEIVSSISDFKFSDNGRYILSRDY  300 (460)
T ss_pred             hhhhhhhhccCchhhhhhccC----------------------------cccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence            999965321110000000000                            0001112223466888999999999998888


Q ss_pred             CcEEEEecCCCCCCCCCCCcccccCcc------------cCe---EEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784          366 GKAMTWDIRRSQDAVKPQPMAELDGHV------------GSV---TQLHMDPY-KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       366 d~i~iwd~~~~~~~~~~~~~~~~~~h~------------~~v---~~l~~~~~-~~l~~gs~dg~i~iwd~~  421 (501)
                      -.++|||.+..+..     +.++.-|.            ..|   ..+.|+.+ +-+.+||.....-++-+.
T Consensus       301 ltvkiwDvnm~k~p-----ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         301 LTVKIWDVNMAKNP-----IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             ceEEEEecccccCC-----ceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            77999999987543     45544331            222   24667777 777777787777777643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=7.7e-09  Score=99.37  Aligned_cols=213  Identities=13%  Similarity=0.092  Sum_probs=124.4

Q ss_pred             ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CC--cEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      .|.++| .+...+.+..+...+.+..|+    |+|+.|+..+. ++  .|.+||+.+++.       ..+....+.....
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wS----PDG~~La~~s~~~g~~~L~~~dl~tg~~-------~~lt~~~g~~~~~  267 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWS----PDGRKLAYVSFENRKAEIFVQDIYTQVR-------EKVTSFPGINGAP  267 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceEC----CCCCEEEEEEecCCCcEEEEEECCCCCe-------EEecCCCCCcCCe
Confidence            566667 555455666677788899997    89988876653 33  588889887652       1222222233467


Q ss_pred             EEeecCCeEEEEEeCCCe--EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784          265 SVAGHKSFLLVTISKDSK--VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA  342 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  342 (501)
                      .|+|++..++++.+.+|.  |.++|+.+++.                                             ..+.
T Consensus       268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~---------------------------------------------~~lt  302 (448)
T PRK04792        268 RFSPDGKKLALVLSKDGQPEIYVVDIATKAL---------------------------------------------TRIT  302 (448)
T ss_pred             eECCCCCEEEEEEeCCCCeEEEEEECCCCCe---------------------------------------------EECc
Confidence            899844444455666664  66667665532                                             1122


Q ss_pred             cCCCcEEEEEEcCCCcEEEEEcC-C-c--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecCCC--c
Q 010784          343 ICKPILHSFSIMPSKSLICTGGI-G-K--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRDDL--R  414 (501)
Q Consensus       343 ~~~~~v~~v~~~~~~~~l~~~~~-d-~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~dg--~  414 (501)
                      .+........|+|||+.++..++ + .  |+++|+.+++.       ..+..........+|+|+ + ++.+...++  .
T Consensus       303 ~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-------~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~  375 (448)
T PRK04792        303 RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-------SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFN  375 (448)
T ss_pred             cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-------EEEecCCCCCcCeeECCCCCEEEEEEecCCceE
Confidence            23344567789999998876653 2 2  77778776542       122111222345689999 4 444443344  4


Q ss_pred             EEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc--eEEEeeccCC
Q 010784          415 INIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG--LLQFRDFSNA  472 (501)
Q Consensus       415 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g--~i~~w~~~~~  472 (501)
                      |.++|+.+++.. .+...      .......|+|||++|+..+. .+|  .+++++....
T Consensus       376 I~~~dl~~g~~~-~lt~~------~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~~~~G~  427 (448)
T PRK04792        376 IARQDLETGAMQ-VLTST------RLDESPSVAPNGTMVIYSTT-YQGKQVLAAVSIDGR  427 (448)
T ss_pred             EEEEECCCCCeE-EccCC------CCCCCceECCCCCEEEEEEe-cCCceEEEEEECCCC
Confidence            555787776543 23211      11223479999999887764 233  4667776433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.23  E-value=3.8e-08  Score=91.49  Aligned_cols=270  Identities=13%  Similarity=0.120  Sum_probs=159.2

Q ss_pred             CceEEec----CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeC----CCcEEEEeccCCCccccccceeeccCC
Q 010784          188 HSIRLWW----KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGE----DATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       188 g~i~vwd----~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      +.|.+|+    +++..  ..+. -......++++    +++++|++...    +|.|..|++.....  ....+......
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~----~~~~~LY~~~e~~~~~g~v~~~~i~~~~g--~L~~~~~~~~~   85 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVS----PDGRRLYVVNEGSGDSGGVSSYRIDPDTG--TLTLLNSVPSG   85 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-----TTSSEEEEEETTSSTTTEEEEEEEETTTT--EEEEEEEEEES
T ss_pred             CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEE----eCCCEEEEEEccccCCCCEEEEEECCCcc--eeEEeeeeccC
Confidence            6777775    23221  2211 23345567775    78999998877    57999999887521  12233333323


Q ss_pred             CCceeEEEEeecCCeEEEEEe-CCCeEEEEECCCC-ccccceecccc--------eecCCCceeeecCCC--eEEEEeC-
Q 010784          258 EKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTSTS-SAVRSSCCVGM--------TSVPGVPVDMKCHES--MLYIASG-  324 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~-  324 (501)
                      ......+++++ ++.+|+++. .+|.|.++++... ...........        ......+.++.++++  .++++.- 
T Consensus        86 g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG  164 (345)
T PF10282_consen   86 GSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG  164 (345)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred             CCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence            44456788987 555555554 6899999999874 32222111111        012334455556655  4455443 


Q ss_pred             -CcEEEEEcCCCc--e--Eeeec-cCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccC------
Q 010784          325 -SSVVTIDLRTMQ--K--VMTPA-ICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDG------  390 (501)
Q Consensus       325 -~~i~~~d~~~~~--~--~~~~~-~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~------  390 (501)
                       +.|.+|++....  .  ...+. ........+.|+|+++++++.. .++ |.++++....-.  .+.+..+..      
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~--~~~~~~~~~~~~~~~  242 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS--LTEIQTISTLPEGFT  242 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE--EEEEEEEESCETTSC
T ss_pred             CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc--eeEEEEeeecccccc
Confidence             389999987654  2  12222 2355678999999999887776 344 999988822111  111111111      


Q ss_pred             cccCeEEEEecCC--eEEEEecCCCcEEEEeCCC--ccc--ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceE
Q 010784          391 HVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT--GML--ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLL  464 (501)
Q Consensus       391 h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~--~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i  464 (501)
                      .......|+++|+  .++++....+.|.+|++..  +++  +..+..     .......++++|+|++|+++.. .++.|
T Consensus       243 ~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-----~G~~Pr~~~~s~~g~~l~Va~~-~s~~v  316 (345)
T PF10282_consen  243 GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-----GGKFPRHFAFSPDGRYLYVANQ-DSNTV  316 (345)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-----SSSSEEEEEE-TTSSEEEEEET-TTTEE
T ss_pred             ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-----CCCCccEEEEeCCCCEEEEEec-CCCeE
Confidence            1225788999999  5566666788899999942  332  223311     1334688999999999999886 57889


Q ss_pred             EEeeccCCc
Q 010784          465 QFRDFSNAT  473 (501)
Q Consensus       465 ~~w~~~~~~  473 (501)
                      .+|+++...
T Consensus       317 ~vf~~d~~t  325 (345)
T PF10282_consen  317 SVFDIDPDT  325 (345)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEeCCC
Confidence            999986544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.23  E-value=5.5e-08  Score=90.43  Aligned_cols=276  Identities=11%  Similarity=0.138  Sum_probs=156.6

Q ss_pred             eeEEEEecccccccceecc--cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC----CCceEEec---C-Cce--e
Q 010784          132 QNIKIDNFLSESYYRATLS--DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC----DHSIRLWW---K-GSC--Q  199 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----dg~i~vwd---~-~~~--~  199 (501)
                      +.|.++++......+....  .-.....-++++|             ++++|.+...    +|.|..|.   . +.+  +
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~-------------~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~   79 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP-------------DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL   79 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T-------------TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe-------------CCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence            6778877732212121111  1233455677777             7888888776    46888886   2 332  2


Q ss_pred             eeccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCCccccccceeec--------cCCCCceeEEEEeecC
Q 010784          200 RCFKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSGKRGQQALKATL--------YGHEKPIKLMSVAGHK  270 (501)
Q Consensus       200 ~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~v~~l~~~~~~  270 (501)
                      .........-..++++    +++++|+++. .+|.|.++++...............        ........++.++| +
T Consensus        80 ~~~~~~g~~p~~i~~~----~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-d  154 (345)
T PF10282_consen   80 NSVPSGGSSPCHIAVD----PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-D  154 (345)
T ss_dssp             EEEEESSSCEEEEEEC----TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-T
T ss_pred             eeeccCCCCcEEEEEe----cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-C
Confidence            2333233344567774    8899888886 4899999999875431111001111        11223456889998 5


Q ss_pred             CeEEEE-EeCCCeEEEEECCCCccccceecccceecCCCceeeecCCC--eEEEEeC--CcEEEEEcC--CCce--Eeee
Q 010784          271 SFLLVT-ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHES--MLYIASG--SSVVTIDLR--TMQK--VMTP  341 (501)
Q Consensus       271 ~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~i~~~d~~--~~~~--~~~~  341 (501)
                      ++++++ .-....|.+|++....................+..+.++++  .++++..  +.|.++++.  ++..  +...
T Consensus       155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~  234 (345)
T PF10282_consen  155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI  234 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence            555544 44567899999987652111111112244555667777665  5666653  478888887  3322  2222


Q ss_pred             cc----C--CCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecC
Q 010784          342 AI----C--KPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRD  411 (501)
Q Consensus       342 ~~----~--~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~  411 (501)
                      ..    .  ......+.++|||++|+++..+.  |.+|++....-.  .+.+..+.........++++|+  .++++...
T Consensus       235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~--l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT--LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT--EEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc--eEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            21    1  22578999999999988877433  999999432111  1223333333445789999999  55666667


Q ss_pred             CCcEEEEeC--CCccccc
Q 010784          412 DLRINIWET--DTGMLAN  427 (501)
Q Consensus       412 dg~i~iwd~--~~~~~~~  427 (501)
                      ++.|.+|++  .+|.+..
T Consensus       313 s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  313 SNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             TTEEEEEEEETTTTEEEE
T ss_pred             CCeEEEEEEeCCCCcEEE
Confidence            889999977  4555443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=7.8e-09  Score=99.34  Aligned_cols=231  Identities=13%  Similarity=0.043  Sum_probs=131.0

Q ss_pred             eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CC--ceEEec-CCceeeeccCCCC
Q 010784          132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DH--SIRLWW-KGSCQRCFKGHNG  207 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg--~i~vwd-~~~~~~~~~~h~~  207 (501)
                      ..+.++|...  .-.+.+..+...+.+..|+|             ||+.|+..+. ++  .|.+|| .+.....+....+
T Consensus       198 ~~l~i~d~dG--~~~~~l~~~~~~~~~p~wSP-------------DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g  262 (448)
T PRK04792        198 YQLMIADYDG--YNEQMLLRSPEPLMSPAWSP-------------DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG  262 (448)
T ss_pred             eEEEEEeCCC--CCceEeecCCCcccCceECC-------------CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC
Confidence            4566667653  22345666777899999999             7888877654 33  477777 2222222322233


Q ss_pred             ceEEEEeeecCCCCCCEEE-EeeCCCc--EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCCe-
Q 010784          208 PVSTLSDKLLGDGSGKILA-SGGEDAT--VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSK-  282 (501)
Q Consensus       208 ~v~~l~~s~~~~~~~~~l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~-  282 (501)
                      ......|+    |+|+.|+ +.+.+|.  |.++|+.++.       ...+..+........|+| +++.++..+ .++. 
T Consensus       263 ~~~~~~wS----PDG~~La~~~~~~g~~~Iy~~dl~tg~-------~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~  330 (448)
T PRK04792        263 INGAPRFS----PDGKKLALVLSKDGQPEIYVVDIATKA-------LTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKP  330 (448)
T ss_pred             CcCCeeEC----CCCCEEEEEEeCCCCeEEEEEECCCCC-------eEECccCCCCccceEECC-CCCEEEEEECCCCCc
Confidence            34467887    7888776 4566665  6777877654       344444555566788998 555554444 3333 


Q ss_pred             -EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEE
Q 010784          283 -VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLIC  361 (501)
Q Consensus       283 -v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~  361 (501)
                       |.++|+.+++...                                           .++.  .......+|+|||++++
T Consensus       331 ~Iy~~dl~~g~~~~-------------------------------------------Lt~~--g~~~~~~~~SpDG~~l~  365 (448)
T PRK04792        331 QIYRVNLASGKVSR-------------------------------------------LTFE--GEQNLGGSITPDGRSMI  365 (448)
T ss_pred             eEEEEECCCCCEEE-------------------------------------------EecC--CCCCcCeeECCCCCEEE
Confidence             4445555442110                                           0111  12223468999998887


Q ss_pred             EEcC-Cc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCc--EEEEeCCCcccccccccCC
Q 010784          362 TGGI-GK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLR--INIWETDTGMLANSLLCNY  433 (501)
Q Consensus       362 ~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~--i~iwd~~~~~~~~~~~~~~  433 (501)
                      ..+. ++   |.++|+.+++..       .+... .......|+|+  .++.+...+|.  +.+++. +|+....+.   
T Consensus       366 ~~~~~~g~~~I~~~dl~~g~~~-------~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~---  433 (448)
T PRK04792        366 MVNRTNGKFNIARQDLETGAMQ-------VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP---  433 (448)
T ss_pred             EEEecCCceEEEEEECCCCCeE-------EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc---
Confidence            7653 32   566787765421       12111 11223479999  44444444444  677776 566666663   


Q ss_pred             CCCCCcceeeeEeec
Q 010784          434 PEEADISTGCSAMAV  448 (501)
Q Consensus       434 ~~~~~~~v~~~~~s~  448 (501)
                        .+...+...+|+|
T Consensus       434 --~~~g~~~~p~Wsp  446 (448)
T PRK04792        434 --AGQGEVKSPAWSP  446 (448)
T ss_pred             --CCCCCcCCCccCC
Confidence              2234456677776

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=8.4e-11  Score=106.83  Aligned_cols=218  Identities=17%  Similarity=0.221  Sum_probs=153.0

Q ss_pred             eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCC-ccccccceeeccCCCCceeEEEEeecCCeEEEEE
Q 010784          199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG-KRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTI  277 (501)
Q Consensus       199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~  277 (501)
                      +..+.+|+..|..++-.    .+.+-+++++.|.+|++|.++... ..+...+..++..|..+|.++.|.. +...++  
T Consensus       728 L~nf~GH~~~iRai~Ai----dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~--  800 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAI----DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIA--  800 (1034)
T ss_pred             eecccCcHHHhHHHHhc----ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceee--
Confidence            45678999999988754    567889999999999999998643 2233446778899999999999985 544555  


Q ss_pred             eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe---CCcEEEEEcCCCceEeeecc-----CCCcEE
Q 010784          278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS---GSSVVTIDLRTMQKVMTPAI-----CKPILH  349 (501)
Q Consensus       278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~-----~~~~v~  349 (501)
                      +.||.|++||.--+..+.+..........+.+.++......++++.   .++++++|.+..+....++.     ....+.
T Consensus       801 ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  801 SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence            4578999999887766554333333334444555544334444443   24899999999887655543     346688


Q ss_pred             EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEE-EeCCCccccc
Q 010784          350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINI-WETDTGMLAN  427 (501)
Q Consensus       350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~i-wd~~~~~~~~  427 (501)
                      +++..+.|+.++++-..+ |.+.|.++++.+      .....-.-....++.-.++.++....|.++.+ |....|....
T Consensus       881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI------Nswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~  954 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAALSNGCIAILDARNGKVI------NSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHL  954 (1034)
T ss_pred             EEEeccCcchhhHHhcCCcEEEEecCCCcee------ccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeee
Confidence            999999999999998777 999999998765      33332222333343333367776678999998 9887776555


Q ss_pred             cc
Q 010784          428 SL  429 (501)
Q Consensus       428 ~~  429 (501)
                      +.
T Consensus       955 q~  956 (1034)
T KOG4190|consen  955 QD  956 (1034)
T ss_pred             cc
Confidence            55

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.21  E-value=4.8e-09  Score=101.07  Aligned_cols=218  Identities=13%  Similarity=0.061  Sum_probs=130.4

Q ss_pred             eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC---CceEEec-CCceeeeccCCC
Q 010784          131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD---HSIRLWW-KGSCQRCFKGHN  206 (501)
Q Consensus       131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd-~~~~~~~~~~h~  206 (501)
                      ...+.++|...  ...+.+..+...+...+|+|             +|++|+.+..+   ..|++|| .......+..+.
T Consensus       169 ~~~l~~~d~~g--~~~~~l~~~~~~~~~p~~Sp-------------dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~  233 (417)
T TIGR02800       169 RYELQVADYDG--ANPQTITRSREPILSPAWSP-------------DGQKLAYVSFESGKPEIYVQDLATGQREKVASFP  233 (417)
T ss_pred             cceEEEEcCCC--CCCEEeecCCCceecccCCC-------------CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC
Confidence            45677777653  33455666777788889998             88988877654   4799998 322233344455


Q ss_pred             CceEEEEeeecCCCCCCEEE-EeeCCC--cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-CC-
Q 010784          207 GPVSTLSDKLLGDGSGKILA-SGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-DS-  281 (501)
Q Consensus       207 ~~v~~l~~s~~~~~~~~~l~-sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-dg-  281 (501)
                      +.+.+++|+    ++++.|+ +.+.++  .|.+||+.++.       ...+..+........|+| +++.|+..+. ++ 
T Consensus       234 ~~~~~~~~s----pDg~~l~~~~~~~~~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~  301 (417)
T TIGR02800       234 GMNGAPAFS----PDGSKLAVSLSKDGNPDIYVMDLDGKQ-------LTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGS  301 (417)
T ss_pred             CCccceEEC----CCCCEEEEEECCCCCccEEEEECCCCC-------EEECCCCCCCCCCEEECC-CCCEEEEEECCCCC
Confidence            667778897    7887665 444444  58888888764       233444444455678887 5666655543 33 


Q ss_pred             -eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784          282 -KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI  360 (501)
Q Consensus       282 -~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l  360 (501)
                       .|.++|+.+++.                                             ..+..+........|+|+|+++
T Consensus       302 ~~iy~~d~~~~~~---------------------------------------------~~l~~~~~~~~~~~~spdg~~i  336 (417)
T TIGR02800       302 PQIYMMDADGGEV---------------------------------------------RRLTFRGGYNASPSWSPDGDLI  336 (417)
T ss_pred             ceEEEEECCCCCE---------------------------------------------EEeecCCCCccCeEECCCCCEE
Confidence             466666654421                                             1111223455678899999988


Q ss_pred             EEEcCC----cEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC---cEEEEeCCCccccccc
Q 010784          361 CTGGIG----KAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL---RINIWETDTGMLANSL  429 (501)
Q Consensus       361 ~~~~~d----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg---~i~iwd~~~~~~~~~~  429 (501)
                      +.++.+    .|.+||+.++..       ..+.. ........|+|+ +.++..+.++   .+.+.+. ++.....+
T Consensus       337 ~~~~~~~~~~~i~~~d~~~~~~-------~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~  404 (417)
T TIGR02800       337 AFVHREGGGFNIAVMDLDGGGE-------RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARL  404 (417)
T ss_pred             EEEEccCCceEEEEEeCCCCCe-------EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence            877643    288888877432       12221 122345679998 5444433433   3555554 34444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.20  E-value=7.1e-09  Score=95.47  Aligned_cols=188  Identities=15%  Similarity=0.147  Sum_probs=138.6

Q ss_pred             cCcEEEEeeCCCceEEec--CCceeeecc---CCCCceEEEEeeec----------------CCCCCCEEEEeeCCCcEE
Q 010784          177 TENVLVTSSCDHSIRLWW--KGSCQRCFK---GHNGPVSTLSDKLL----------------GDGSGKILASGGEDATVR  235 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~---~h~~~v~~l~~s~~----------------~~~~~~~l~sg~~dg~i~  235 (501)
                      ...++|....||.+++||  .++....|.   .-.+..++..|...                ...+...++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            578999999999999999  555544443   22344555555421                112345678888999999


Q ss_pred             EEeccCCCccccccceeec--cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeee
Q 010784          236 LWSLSSSGKRGQQALKATL--YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMK  313 (501)
Q Consensus       236 iwd~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (501)
                      +++...++.      ...+  ..|.+.|.++.++. +...|.+++.|+.+..|+....+..+...+     ....+.++.
T Consensus        84 ~ys~~~g~i------t~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-----~~~~~~sl~  151 (541)
T KOG4547|consen   84 LYSVAGGEI------TAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKE-----QKPLVSSLC  151 (541)
T ss_pred             EEEecCCeE------EEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeecc-----CCCccceEE
Confidence            999998873      3333  46999999999885 677999999999999999998876554432     233344555


Q ss_pred             cCCCeEEEE-eCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-----CcEEEEEc-CCc-EEEEecCCC
Q 010784          314 CHESMLYIA-SGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-----KSLICTGG-IGK-AMTWDIRRS  376 (501)
Q Consensus       314 ~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~l~~~~-~d~-i~iwd~~~~  376 (501)
                      ..++...++ .+.+|.+||+++.+.+.+|.+|.++|.++.|.-+     |.++.++. .+. +.+|-....
T Consensus       152 is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  152 ISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             EcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            555554444 4569999999999999999999999999999876     77777766 344 888877663

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=1e-08  Score=98.84  Aligned_cols=230  Identities=12%  Similarity=0.036  Sum_probs=132.4

Q ss_pred             eEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC---CceEEec-CCceeeeccCCCCc
Q 010784          133 NIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD---HSIRLWW-KGSCQRCFKGHNGP  208 (501)
Q Consensus       133 ~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd-~~~~~~~~~~h~~~  208 (501)
                      .+.++|...  ...+.+..+...+....|+|             +|+.|+..+.+   ..|.+|| .+.....+....+.
T Consensus       180 ~l~~~d~~g--~~~~~l~~~~~~~~~p~wSp-------------DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~  244 (430)
T PRK00178        180 TLQRSDYDG--ARAVTLLQSREPILSPRWSP-------------DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL  244 (430)
T ss_pred             EEEEECCCC--CCceEEecCCCceeeeeECC-------------CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC
Confidence            466667663  33455667778899999999             78888776543   3577788 32233333333445


Q ss_pred             eEEEEeeecCCCCCCEEE-EeeCCC--cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCC--e
Q 010784          209 VSTLSDKLLGDGSGKILA-SGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDS--K  282 (501)
Q Consensus       209 v~~l~~s~~~~~~~~~l~-sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg--~  282 (501)
                      +....|+    |+|+.|+ +.+.+|  .|.++|+.++.       ...+..+........|+| +++.++..+ .+|  .
T Consensus       245 ~~~~~~S----pDG~~la~~~~~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~  312 (430)
T PRK00178        245 NGAPAWS----PDGSKLAFVLSKDGNPEIYVMDLASRQ-------LSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQ  312 (430)
T ss_pred             cCCeEEC----CCCCEEEEEEccCCCceEEEEECCCCC-------eEEcccCCCCcCCeEECC-CCCEEEEEECCCCCce
Confidence            5568887    7888776 455555  57888888765       233444555566678998 555554444 333  4


Q ss_pred             EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEE
Q 010784          283 VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICT  362 (501)
Q Consensus       283 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  362 (501)
                      |.++|+.+++...                                           ....  ........|+|+|+.++.
T Consensus       313 iy~~d~~~g~~~~-------------------------------------------lt~~--~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        313 IYKVNVNGGRAER-------------------------------------------VTFV--GNYNARPRLSADGKTLVM  347 (430)
T ss_pred             EEEEECCCCCEEE-------------------------------------------eecC--CCCccceEECCCCCEEEE
Confidence            5566665543210                                           0011  112234679999998877


Q ss_pred             EcC-C--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE-EecCCC--cEEEEeCCCcccccccccCCC
Q 010784          363 GGI-G--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT-GGRDDL--RINIWETDTGMLANSLLCNYP  434 (501)
Q Consensus       363 ~~~-d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~-~gs~dg--~i~iwd~~~~~~~~~~~~~~~  434 (501)
                      .+. +  . |.++|+.+++..       .+.. ........|+|+ +.++ +...+|  .|.++++. +.....+.    
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~-------~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~----  414 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVR-------ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLP----  414 (430)
T ss_pred             EEccCCceEEEEEECCCCCEE-------EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc----
Confidence            662 2  2 888998876532       1211 112224579998 4444 433333  46666764 44444442    


Q ss_pred             CCCCcceeeeEeec
Q 010784          435 EEADISTGCSAMAV  448 (501)
Q Consensus       435 ~~~~~~v~~~~~s~  448 (501)
                       .+.+.+...+|+|
T Consensus       415 -~~~g~~~~p~ws~  427 (430)
T PRK00178        415 -TAQGEVREPSWSP  427 (430)
T ss_pred             -CCCCCcCCCccCC
Confidence             1233455566765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.18  E-value=1.5e-09  Score=99.86  Aligned_cols=189  Identities=11%  Similarity=0.070  Sum_probs=141.1

Q ss_pred             cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce--ee------------------ecCCCeEEEEeC-CcE
Q 010784          269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV--DM------------------KCHESMLYIASG-SSV  327 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~~~~~~~~-~~i  327 (501)
                      +...+++....||.+++||...++....+.........+...  .+                  +.....+++.+. +.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            356789999999999999999887655443333221111111  11                  111122333333 489


Q ss_pred             EEEEcCCCceEeeec--cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784          328 VTIDLRTMQKVMTPA--ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-  403 (501)
Q Consensus       328 ~~~d~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-  403 (501)
                      .+|+...++....+.  .|.+.|.++.++.+-..|.+++.|. +..|+.......      ...+.-...+.+++++|+ 
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~------~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII------RIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee------eeeccCCCccceEEEcCCC
Confidence            999999999887776  5889999999999988999999998 999999986544      777777888999999999 


Q ss_pred             eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecc-----ccEEEEeecCCCceEEEeeccC
Q 010784          404 KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS-----GCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      .+++++  .+.|++||+++++.+.+|     .+|.++|.+++|-.+     |.++.++.. ...-+.+|-+..
T Consensus       157 ~~l~~a--s~~ik~~~~~~kevv~~f-----tgh~s~v~t~~f~~~~~g~~G~~vLssa~-~~r~i~~w~v~~  221 (541)
T KOG4547|consen  157 KILLTA--SRQIKVLDIETKEVVITF-----TGHGSPVRTLSFTTLIDGIIGKYVLSSAA-AERGITVWVVEK  221 (541)
T ss_pred             CEEEec--cceEEEEEccCceEEEEe-----cCCCcceEEEEEEEeccccccceeeeccc-cccceeEEEEEc
Confidence            888875  468999999999999999     788999999999987     777776543 455666776443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.16  E-value=5.4e-10  Score=105.06  Aligned_cols=204  Identities=17%  Similarity=0.279  Sum_probs=139.9

Q ss_pred             cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEe-c-CCceeeeccCC-CCceEEEEeeecCCCCCCEEEEeeC
Q 010784          154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW-W-KGSCQRCFKGH-NGPVSTLSDKLLGDGSGKILASGGE  230 (501)
Q Consensus       154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw-d-~~~~~~~~~~h-~~~v~~l~~s~~~~~~~~~l~sg~~  230 (501)
                      +++.++..+|             .|+-++.++.-|-+.+= | .....+-+..- .-.|-.+.|++.+. ....+++- .
T Consensus        25 ~~~~a~si~p-------------~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a-~~~wiVst-s   89 (1081)
T KOG0309|consen   25 GGFNAVSINP-------------SGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPA-KPYWIVST-S   89 (1081)
T ss_pred             Ccccceeecc-------------ccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCC-CceeEEec-C
Confidence            4566777777             78888888877754332 2 33333333211 12456677875432 22344444 4


Q ss_pred             CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784          231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV  310 (501)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  310 (501)
                      ...-.+|++.....   ......+.+|...|+.+.|.+.....+++++.|..+..||+++....                
T Consensus        90 ~qkaiiwnlA~ss~---~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p----------------  150 (1081)
T KOG0309|consen   90 NQKAIIWNLAKSSS---NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP----------------  150 (1081)
T ss_pred             cchhhhhhhhcCCc---cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc----------------
Confidence            45567899875432   22455678999999999999999999999999999999999876321                


Q ss_pred             eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc
Q 010784          311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD  389 (501)
Q Consensus       311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~  389 (501)
                                                 +..+..-......+.|+...-.+.+.+.++ |++||++.+.     .++..++
T Consensus       151 ---------------------------~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs-----~pl~s~K  198 (1081)
T KOG0309|consen  151 ---------------------------FYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS-----TPLCSLK  198 (1081)
T ss_pred             ---------------------------eeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC-----cceEEec
Confidence                                       111111233345678876554555566666 9999999985     4578899


Q ss_pred             CcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc
Q 010784          390 GHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       390 ~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~  423 (501)
                      +|...|+.++|...  ..+.+++.||+|++||.+..
T Consensus       199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             ccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            99999999999876  55666689999999998753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.16  E-value=4.4e-08  Score=103.04  Aligned_cols=255  Identities=9%  Similarity=0.070  Sum_probs=152.4

Q ss_pred             cCcEEEEeeCCCceEEec-CCceeeeccC--C------------CCceEEEEeeecCCCCCCEEEEee-CCCcEEEEecc
Q 010784          177 TENVLVTSSCDHSIRLWW-KGSCQRCFKG--H------------NGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLS  240 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd-~~~~~~~~~~--h------------~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~  240 (501)
                      +++++++-+.++.|+++| .+..+..+..  .            -..-..+++.    ++++.|+.+. .++.|+++|+.
T Consensus       579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd----~~gn~LYVaDt~n~~Ir~id~~  654 (1057)
T PLN02919        579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN----AKKNLLYVADTENHALREIDFV  654 (1057)
T ss_pred             CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEe----CCCCEEEEEeCCCceEEEEecC
Confidence            467888888889999999 6655444322  1            1124677774    6667655554 45789999987


Q ss_pred             CCCccccccceeeccCC-----------------CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce
Q 010784          241 SSGKRGQQALKATLYGH-----------------EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT  303 (501)
Q Consensus       241 ~~~~~~~~~~~~~~~~~-----------------~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~  303 (501)
                      ++.       +.++.+.                 -..-..++++|.++.++++.+.++.|++||..++....        
T Consensus       655 ~~~-------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~--------  719 (1057)
T PLN02919        655 NET-------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV--------  719 (1057)
T ss_pred             CCE-------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE--------
Confidence            653       2222110                 01235789988677788888889999999987763210        


Q ss_pred             ecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEE-EEcCCc-EEEEecCCCCCCC-
Q 010784          304 SVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLIC-TGGIGK-AMTWDIRRSQDAV-  380 (501)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~d~-i~iwd~~~~~~~~-  380 (501)
                                       ++..+.....   .+...  ....-.....++++|++..|+ +.+.++ |++||+.++.... 
T Consensus       720 -----------------~~G~G~~~~~---~g~~~--~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~  777 (1057)
T PLN02919        720 -----------------FSGDGYERNL---NGSSG--TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL  777 (1057)
T ss_pred             -----------------EecCCccccC---CCCcc--ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence                             0000000000   00000  000113356799999987444 444555 9999988654210 


Q ss_pred             -C-----CCCcccccC--------cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCC--------CCCC
Q 010784          381 -K-----PQPMAELDG--------HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNY--------PEEA  437 (501)
Q Consensus       381 -~-----~~~~~~~~~--------h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~--------~~~~  437 (501)
                       .     ......+..        .-.....++++++ .++++-+.+++|++||..++........+.        ....
T Consensus       778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~  857 (1057)
T PLN02919        778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ  857 (1057)
T ss_pred             EecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence             0     000011110        1113468899998 888888899999999998776543321110        0112


Q ss_pred             CcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          438 DISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       438 ~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      -.....++++++|+.+++-+  .++.|++||+..+..
T Consensus       858 l~~P~GIavd~dG~lyVaDt--~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        858 LSEPAGLALGENGRLFVADT--NNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCceEEEEeCCCCEEEEEC--CCCEEEEEECCCCcc
Confidence            23567899999999888776  679999999987653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=2.8e-08  Score=94.71  Aligned_cols=238  Identities=11%  Similarity=0.019  Sum_probs=133.3

Q ss_pred             ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCE---EEEeeCCC--cEEEEeccCCCccccccceeeccCCCCcee
Q 010784          189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKI---LASGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~---l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      .|.+.| .|...+.+......+.+-+|+    |+|+.   +++...+|  .|.+.++.+++.       ..+....+...
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wS----PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-------~~lt~~~g~~~  234 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSITPTWM----HIGSGFPYLYVSYKLGVPKIFLGSLENPAG-------KKILALQGNQL  234 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcccceEc----cCCCceEEEEEEccCCCceEEEEECCCCCc-------eEeecCCCCcc
Confidence            566667 555555565556666777887    78764   33444444  577778877653       22222333444


Q ss_pred             EEEEeecCCeEEEEEe-CCC----eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784          263 LMSVAGHKSFLLVTIS-KDS----KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s-~dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  337 (501)
                      ..+|+| +++.|+..+ .+|    .+..|++..+..                                         ++.
T Consensus       235 ~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~-----------------------------------------g~~  272 (428)
T PRK01029        235 MPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAI-----------------------------------------GKP  272 (428)
T ss_pred             ceEECC-CCCEEEEEECCCCCcceeEEEeecccCCC-----------------------------------------Ccc
Confidence            678998 565555544 223    233345443210                                         011


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEE--ecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE-EecC
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTW--DIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT-GGRD  411 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iw--d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~-~gs~  411 (501)
                      ..............+|+|||+.|+..+ .++ ..+|  ++.....     ....+..+...+....|+|+ +.++ ++..
T Consensus       273 ~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-----~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~  347 (428)
T PRK01029        273 RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-----SPRLLTKKYRNSSCPAWSPDGKKIAFCSVI  347 (428)
T ss_pred             eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc-----ceEEeccCCCCccceeECCCCCEEEEEEcC
Confidence            111111122345679999999877665 334 4444  4432111     01333334456678899999 5444 4333


Q ss_pred             C--CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec-CCCceEEEeeccCCcccee-ecCCCCceee
Q 010784          412 D--LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY-GEPGLLQFRDFSNATCPVL-KHEVQNDSKF  487 (501)
Q Consensus       412 d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-d~~g~i~~w~~~~~~~~~~-s~~~d~~~~~  487 (501)
                      +  ..|.+||+.+++......      ....+....|+|||++|+..+. .....|+++++..+....+ .+..+.....
T Consensus       348 ~g~~~I~v~dl~~g~~~~Lt~------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~  421 (428)
T PRK01029        348 KGVRQICVYDLATGRDYQLTT------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPS  421 (428)
T ss_pred             CCCcEEEEEECCCCCeEEccC------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCce
Confidence            2  469999998887543321      1234567899999998875443 2346788899887765444 3434444566


Q ss_pred             ecc
Q 010784          488 WGP  490 (501)
Q Consensus       488 w~~  490 (501)
                      |.+
T Consensus       422 Ws~  424 (428)
T PRK01029        422 WGA  424 (428)
T ss_pred             ecC
Confidence            754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.14  E-value=2.3e-07  Score=84.10  Aligned_cols=260  Identities=12%  Similarity=0.015  Sum_probs=153.9

Q ss_pred             CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC----------CCcEEEEeccCCCccccccceeecc
Q 010784          188 HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE----------DATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       188 g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      ++|.+.|  +++.+.++..-..+-. + ++    ++++.|+.+..          +..|.+||..+.+.      +..+.
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~s----pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~------~~~i~   94 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VA----SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP------IADIE   94 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-EC----CCCCEEEEEeccccccccCCCCCEEEEEECccCcE------EeEEc
Confidence            8899999  6666777664333332 3 54    78888877765          78999999999874      44443


Q ss_pred             CC-------CCceeEEEEeecCCeEEEEEe-C-CCeEEEEECCCCccccceecccceecCCCceeeecCCC-eEEEEeCC
Q 010784          256 GH-------EKPIKLMSVAGHKSFLLVTIS-K-DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHES-MLYIASGS  325 (501)
Q Consensus       256 ~~-------~~~v~~l~~~~~~~~~l~s~s-~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  325 (501)
                      .-       ...-..++++| ++++++... . +..|.+.|+.+++.+.....      ++...-+...+. ....+.++
T Consensus        95 ~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v------p~~~~vy~t~e~~~~~~~~Dg  167 (352)
T TIGR02658        95 LPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV------PDCYHIFPTANDTFFMHCRDG  167 (352)
T ss_pred             cCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC------CCCcEEEEecCCccEEEeecC
Confidence            21       11233678887 666666554 3 78999999999976654432      222222222222 22222222


Q ss_pred             cEEEEEcC-CCce-Eee---eccCCCcEE-EEEEcC-CCcEEEEEcCCcEEEEecCCCCCCCCCCCccccc-------Cc
Q 010784          326 SVVTIDLR-TMQK-VMT---PAICKPILH-SFSIMP-SKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELD-------GH  391 (501)
Q Consensus       326 ~i~~~d~~-~~~~-~~~---~~~~~~~v~-~v~~~~-~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~-------~h  391 (501)
                      ......+. +++. ...   +.....++. .-.+.+ +|+++....++.|.+.|+...+... ...+..+.       -.
T Consensus       168 ~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~-~~~~~~~~~~~~~~~wr  246 (352)
T TIGR02658       168 SLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKF-LPAIEAFTEAEKADGWR  246 (352)
T ss_pred             ceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCccee-cceeeeccccccccccC
Confidence            22222111 1111 111   111001100 003455 8888888888559999975543220 11112111       12


Q ss_pred             ccCeEEEEecCC--eEEEEe-c--------CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc-EEEEeecC
Q 010784          392 VGSVTQLHMDPY--KIVTGG-R--------DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC-RIVTASYG  459 (501)
Q Consensus       392 ~~~v~~l~~~~~--~~l~~g-s--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d  459 (501)
                      .+.+.-++++|+  ++++.. .        ..+.|.++|..+++.+..+..      ...+..++++|||+ +|++... 
T Consensus       247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v------G~~~~~iavS~Dgkp~lyvtn~-  319 (352)
T TIGR02658       247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL------GHEIDSINVSQDAKPLLYALST-  319 (352)
T ss_pred             CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC------CCceeeEEECCCCCeEEEEeCC-
Confidence            334455999988  555532 1        225799999999999999853      34688999999999 7776653 


Q ss_pred             CCceEEEeeccCCcc
Q 010784          460 EPGLLQFRDFSNATC  474 (501)
Q Consensus       460 ~~g~i~~w~~~~~~~  474 (501)
                      .++.|.+.|..++..
T Consensus       320 ~s~~VsViD~~t~k~  334 (352)
T TIGR02658       320 GDKTLYIFDAETGKE  334 (352)
T ss_pred             CCCcEEEEECcCCeE
Confidence            468899999887754

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.13  E-value=1.7e-08  Score=83.89  Aligned_cols=201  Identities=11%  Similarity=0.010  Sum_probs=136.1

Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      .-.+|+.|+.-|...+|...+.+.     ..+....|...|+-+.-.......+..++.|.++++.++..+...      
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~-----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~------  151 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDG-----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK------  151 (344)
T ss_pred             cccEEEeccccceeeeecccCccc-----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc------
Confidence            345899999999999999997664     444445555544332211122335667788888888887655321      


Q ss_pred             cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC--cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCC
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP--ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQ  377 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~  377 (501)
                                                              +..|..  .+.++++++|++++++.++.. |..|.+....
T Consensus       152 ----------------------------------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s  191 (344)
T KOG4532|consen  152 ----------------------------------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES  191 (344)
T ss_pred             ----------------------------------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc
Confidence                                                    111222  278899999999999999888 9999987654


Q ss_pred             CCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc--EEE
Q 010784          378 DAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC--RIV  454 (501)
Q Consensus       378 ~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~  454 (501)
                      ..  ... ......+..-.+..|+.. ..+|+++.||++.|||++...............|.+++..+.|++-|.  +|+
T Consensus       192 ey--~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf  268 (344)
T KOG4532|consen  192 EY--IEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLF  268 (344)
T ss_pred             ce--eee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEE
Confidence            32  011 122333445567788888 888888999999999999854433333333345899999999998663  444


Q ss_pred             EeecCCCceEEEeeccCCcccee
Q 010784          455 TASYGEPGLLQFRDFSNATCPVL  477 (501)
Q Consensus       455 s~~~d~~g~i~~w~~~~~~~~~~  477 (501)
                      ..-  +-+.+.+.|..+....-.
T Consensus       269 ~sE--hfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  269 ISE--HFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             Eec--CcceEEEEEcccCceeeE
Confidence            443  568999999988776433

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.13  E-value=1.6e-09  Score=95.08  Aligned_cols=85  Identities=14%  Similarity=0.213  Sum_probs=72.0

Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCCeEEEEecCCCcEEE
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPYKIVTGGRDDLRINI  417 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~l~~gs~dg~i~i  417 (501)
                      .+-+|-..++.++++||+++|+++..|. ||+-.......+      ..+ -||..-|..++.-+++.|.+||.|++|++
T Consensus       146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I------esfclGH~eFVS~isl~~~~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI------ESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRL  219 (390)
T ss_pred             hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch------hhhccccHhheeeeeeccCceeeecCCCCcEEE
Confidence            3456889999999999999999999888 999887764332      444 47999999999999977888889999999


Q ss_pred             EeCCCcccccccc
Q 010784          418 WETDTGMLANSLL  430 (501)
Q Consensus       418 wd~~~~~~~~~~~  430 (501)
                      ||+.+|+.+.++.
T Consensus       220 Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  220 WDITSGKLLDTCD  232 (390)
T ss_pred             EecccCCcccccc
Confidence            9999999988773

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.12  E-value=1.2e-09  Score=102.73  Aligned_cols=286  Identities=12%  Similarity=0.095  Sum_probs=182.4

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc--ceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA--RITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~--~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      ...+.+.+.++|.|+-+|.++.-|.+.+ |+.......+.+ .|..  .|-.+.|+|..           ...+-+....
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr~l-~h~tpw~vad~qws~h~-----------a~~~wiVsts   89 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPPRWL-HHITPWQVADVQWSPHP-----------AKPYWIVSTS   89 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcCeEEE-eccCCCCCceee-eccCcchhcceecccCC-----------CCceeEEecC
Confidence            3456899999999999999998776554 444323333333 2322  37788898832           3344444444


Q ss_pred             CCceEEec-----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          187 DHSIRLWW-----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       187 dg~i~vwd-----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                      ...-.+|+     .......+.+|...|+.+.|.+   .....+++++.|-.+..||+++...     ++.....-...-
T Consensus        90 ~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~---q~pdVlatcsvdt~vh~wd~rSp~~-----p~ys~~~w~s~a  161 (1081)
T KOG0309|consen   90 NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNP---QHPDVLATCSVDTYVHAWDMRSPHR-----PFYSTSSWRSAA  161 (1081)
T ss_pred             cchhhhhhhhcCCccceEEEEecCccceeccccCC---CCCcceeeccccccceeeeccCCCc-----ceeeeecccccC
Confidence            45566887     3344456789999999999984   5567999999999999999998765     555555555556


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      ..++|+..+++.+++ +....|.+||.+.+.                                           .++..+
T Consensus       162 sqVkwnyk~p~vlas-shg~~i~vwd~r~gs-------------------------------------------~pl~s~  197 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLAS-SHGNDIFVWDLRKGS-------------------------------------------TPLCSL  197 (1081)
T ss_pred             ceeeecccCcchhhh-ccCCceEEEeccCCC-------------------------------------------cceEEe
Confidence            778998766766554 556779999998773                                           234456


Q ss_pred             ccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEE
Q 010784          342 AICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRIN  416 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~  416 (501)
                      ++|...|+++.|..- ...+.+.+.|+ |+.||..+....    .-.. .....+|..-.+-|-   .++.-.-.+..+.
T Consensus       198 K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e----~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~  272 (1081)
T KOG0309|consen  198 KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE----SKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVP  272 (1081)
T ss_pred             cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc----ccee-ccccCcceeccccccCceeEeccccCCeeee
Confidence            668888888888764 44566667677 999999875432    1111 112344555555553   2221111122333


Q ss_pred             E---------EeCCC-cccccccccCCCCCCCcceeeeEeecccc----------EEEEeecCCCceEEEeeccC
Q 010784          417 I---------WETDT-GMLANSLLCNYPEEADISTGCSAMAVSGC----------RIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       417 i---------wd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~----------~l~s~~~d~~g~i~~w~~~~  471 (501)
                      +         |++.+ .+.+.+|     .+|...|....|-..+.          .|++=+  .|..+++|-+..
T Consensus       273 ~~~c~n~d~e~n~~~~~~pVh~F-----~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS--kD~~lrlWpI~~  340 (1081)
T KOG0309|consen  273 QLRCENSDLEWNVFDLNTPVHTF-----VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS--KDQTLRLWPIDS  340 (1081)
T ss_pred             eccccchhhhhccccCCcceeee-----cCcchHHHHHhhhhcccccCCCCccceeEEEee--cCCceEeeeccH
Confidence            3         33333 3566777     56777776665543222          566666  558888887654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.11  E-value=1.6e-09  Score=94.98  Aligned_cols=159  Identities=13%  Similarity=0.175  Sum_probs=110.2

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccc---cceeccc--CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESY---YRATLSD--HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~---~~~~~~~--h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      +..+..++++.++|++..+....+++.....+   +......  ....+..+....             .......++..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-------------sv~v~dkagD~  131 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-------------SVLVADKAGDV  131 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-------------eEEEEeecCCc
Confidence            55667789999999998888877777664322   2222211  122233333222             22333334445


Q ss_pred             CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784          188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                      ..+.+|+ ...+....-+|-..++.++|+    +|+++++++..|..|++-.....-.     .-....||+.-|..+++
T Consensus       132 ~~~di~s~~~~~~~~~lGhvSml~dVavS----~D~~~IitaDRDEkIRvs~ypa~f~-----IesfclGH~eFVS~isl  202 (390)
T KOG3914|consen  132 YSFDILSADSGRCEPILGHVSMLLDVAVS----PDDQFIITADRDEKIRVSRYPATFV-----IESFCLGHKEFVSTISL  202 (390)
T ss_pred             eeeeeecccccCcchhhhhhhhhheeeec----CCCCEEEEecCCceEEEEecCcccc-----hhhhccccHhheeeeee
Confidence            5566665 224445566899999999998    8999999999999999988765432     22344679999999999


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCcccc
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVR  295 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~  295 (501)
                      .  ++..|++||.|++|++||+++++.+.
T Consensus       203 ~--~~~~LlS~sGD~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  203 T--DNYLLLSGSGDKTLRLWDITSGKLLD  229 (390)
T ss_pred             c--cCceeeecCCCCcEEEEecccCCccc
Confidence            7  45569999999999999999998764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.07  E-value=1.5e-07  Score=89.27  Aligned_cols=265  Identities=12%  Similarity=0.085  Sum_probs=150.9

Q ss_pred             cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      .++.++.++.+|.|..+|  +|+.+-.+...........      .++..++.++.+|.+..+|..+++.      +...
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~------v~~~~v~v~~~~g~l~ald~~tG~~------~W~~  131 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG------ADGGLVFVGTEKGEVIALDAEDGKE------LWRA  131 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE------EcCCEEEEEcCCCEEEEEECCCCcE------eeee
Confidence            456888888899999998  6776655443332222222      2456788888999999999988874      2222


Q ss_pred             cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-ecCCCceeeecCCCeEEEEeC-CcEEEEEc
Q 010784          255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGVPVDMKCHESMLYIASG-SSVVTIDL  332 (501)
Q Consensus       255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~  332 (501)
                      .. ...+.+....  .+..++.++.+|.|..+|.++++.+......... ..... ......++.+++... +.+..+|.
T Consensus       132 ~~-~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~-~sp~~~~~~v~~~~~~g~v~ald~  207 (377)
T TIGR03300       132 KL-SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS-ASPVIADGGVLVGFAGGKLVALDL  207 (377)
T ss_pred             cc-CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC-CCCEEECCEEEEECCCCEEEEEEc
Confidence            21 1222211111  2335677788999999999998765443321110 00000 011112234444443 58999999


Q ss_pred             CCCceEeeeccCCC----c---EEEEEEcC--CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784          333 RTMQKVMTPAICKP----I---LHSFSIMP--SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP  402 (501)
Q Consensus       333 ~~~~~~~~~~~~~~----~---v~~v~~~~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  402 (501)
                      ++++.+........    .   ...+.-+|  .+..++.++.++ ++.+|..+++..      .....  ..........
T Consensus       208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~------W~~~~--~~~~~p~~~~  279 (377)
T TIGR03300       208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL------WKRDA--SSYQGPAVDD  279 (377)
T ss_pred             cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE------Eeecc--CCccCceEeC
Confidence            99987755432100    0   00111111  244566666566 999999987654      22221  1122233334


Q ss_pred             CeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          403 YKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       403 ~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      +.+++. +.||.+..+|..+|+.+-.....  .  .........  .+..|++++  .+|.|+++|..+++.
T Consensus       280 ~~vyv~-~~~G~l~~~d~~tG~~~W~~~~~--~--~~~~ssp~i--~g~~l~~~~--~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       280 NRLYVT-DADGVVVALDRRSGSELWKNDEL--K--YRQLTAPAV--VGGYLVVGD--FEGYLHWLSREDGSF  342 (377)
T ss_pred             CEEEEE-CCCCeEEEEECCCCcEEEccccc--c--CCccccCEE--ECCEEEEEe--CCCEEEEEECCCCCE
Confidence            455554 58999999999999877554210  0  111112122  466888887  669999999776554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.06  E-value=1.5e-07  Score=99.02  Aligned_cols=271  Identities=11%  Similarity=0.081  Sum_probs=155.4

Q ss_pred             CceEEeeC-CcEEEeecCCeeeEEEEecccccccceeccc--C------------CcceeEEEeeccCcCcccccCCCCc
Q 010784          113 HDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSD--H------------KARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       113 i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~--h------------~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      ...+++++ ++.++++-...+.|.++|...  ..+..+.+  .            -..-..+++.+             +
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-------------~  634 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-------------K  634 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-------------C
Confidence            45688986 577888888889999999763  33333322  1            12246677776             6


Q ss_pred             CcEEEEe-eCCCceEEec-CCceeeeccCC-----------------CCceEEEEeeecCCC-CCCEEEEeeCCCcEEEE
Q 010784          178 ENVLVTS-SCDHSIRLWW-KGSCQRCFKGH-----------------NGPVSTLSDKLLGDG-SGKILASGGEDATVRLW  237 (501)
Q Consensus       178 ~~~l~s~-~~dg~i~vwd-~~~~~~~~~~h-----------------~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iw  237 (501)
                      ++.|+.+ ...+.|+++| ....+.++.+-                 -..-..++|+    + ++.++++.+.++.|++|
T Consensus       635 gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d----p~~g~LyVad~~~~~I~v~  710 (1057)
T PLN02919        635 KNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE----PVNEKVYIAMAGQHQIWEY  710 (1057)
T ss_pred             CCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe----cCCCeEEEEECCCCeEEEE
Confidence            6655444 4457799888 44445444221                 0122467886    5 56677777788999999


Q ss_pred             eccCCCccccc--cceeeccC------CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc
Q 010784          238 SLSSSGKRGQQ--ALKATLYG------HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP  309 (501)
Q Consensus       238 d~~~~~~~~~~--~~~~~~~~------~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  309 (501)
                      |..++......  .......+      .-.....|+++|+++.++++-+.++.|++||+.++.....   .     .+..
T Consensus       711 d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~---~-----gg~~  782 (1057)
T PLN02919        711 NISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL---A-----GGDP  782 (1057)
T ss_pred             ECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE---E-----eccc
Confidence            98765320000  00000011      1123457899985455777777889999999987632100   0     0000


Q ss_pred             eeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCC---CCC-
Q 010784          310 VDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVK---PQP-  384 (501)
Q Consensus       310 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~---~~~-  384 (501)
                      .   . +..       ...+.+.. +...   ...-.....++++++|+++++-+.+. |++||..++.....   ... 
T Consensus       783 ~---~-~~~-------l~~fG~~d-G~g~---~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G  847 (1057)
T PLN02919        783 T---F-SDN-------LFKFGDHD-GVGS---EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG  847 (1057)
T ss_pred             c---c-Ccc-------cccccCCC-Cchh---hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence            0   0 000       00000000 0000   00111235789999999888888777 99999987543200   000 


Q ss_pred             ---cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784          385 ---MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML  425 (501)
Q Consensus       385 ---~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~  425 (501)
                         -....+.-.....++++++ +++++-+.++.|++||+.+++.
T Consensus       848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        848 FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence               0001112235778999999 8888888999999999998765

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=99.06  E-value=1.6e-10  Score=72.61  Aligned_cols=47  Identities=17%  Similarity=0.456  Sum_probs=40.6

Q ss_pred             ccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHh
Q 010784           19 AIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFR   65 (501)
Q Consensus        19 ~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~   65 (501)
                      .+.+||+|++.+||.||+..++.++++||+.|++++.+..+|...+|
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r   48 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR   48 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence            46789999999999999999999999999999999999999998764

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.05  E-value=7.3e-09  Score=85.56  Aligned_cols=162  Identities=13%  Similarity=0.094  Sum_probs=106.6

Q ss_pred             EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      +..+..+-.+=+.+-.+.-+++|..||.+.+.+.+...+..+.+..-...-.+.....             .++.+.++.
T Consensus        85 ~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~-------------~~~~i~s~~  151 (319)
T KOG4714|consen   85 LAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICR-------------HGNSILSGG  151 (319)
T ss_pred             eeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceee-------------cccEEecCC
Confidence            3344444444455555677899999999999997743222222221111122223333             355555544


Q ss_pred             CCCce------EEecCCceeeecc---CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          186 CDHSI------RLWWKGSCQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       186 ~dg~i------~vwd~~~~~~~~~---~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                       -|.+      +.|+ ...+.++.   .....|++++-+|   ...+++++|+.||.+-+||.+....     +...++.
T Consensus       152 -~g~~n~~d~~~a~~-~~p~~t~~~~~~~~~~v~~l~~hp---~qq~~v~cgt~dg~~~l~d~rn~~~-----p~S~l~a  221 (319)
T KOG4714|consen  152 -CGNWNAQDNFYANT-LDPIKTLIPSKKALDAVTALCSHP---AQQHLVCCGTDDGIVGLWDARNVAM-----PVSLLKA  221 (319)
T ss_pred             -cceEeeccceeeec-ccccccccccccccccchhhhCCc---ccccEEEEecCCCeEEEEEcccccc-----hHHHHHH
Confidence             3333      3444 11222221   1223488888774   4456888999999999999998765     6778899


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST  290 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~  290 (501)
                      |..++..+-|+|.++..|+++++||.+.-||..+
T Consensus       222 hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  222 HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            9999999999999999999999999999999875

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.04  E-value=4.6e-08  Score=81.31  Aligned_cols=235  Identities=11%  Similarity=0.059  Sum_probs=152.5

Q ss_pred             CCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCce
Q 010784          120 NNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSC  198 (501)
Q Consensus       120 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~  198 (501)
                      .+-.+||.|+..|...+|...+.....+....|...|+-+.=.-+            ....+..++.|.++++.+ .+..
T Consensus        82 ~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd------------~~~~~~i~sndht~k~~~~~~~s  149 (344)
T KOG4532|consen   82 NKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCD------------LKFPLNIASNDHTGKTMVVSGDS  149 (344)
T ss_pred             ccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcc------------cccceeeccCCcceeEEEEecCc
Confidence            456789999999999999988754444444455554432221110            223466677888888887 3322


Q ss_pred             eeeccCCCCc--eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee-eccCCCCceeEEEEeecCCeEEE
Q 010784          199 QRCFKGHNGP--VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA-TLYGHEKPIKLMSVAGHKSFLLV  275 (501)
Q Consensus       199 ~~~~~~h~~~--v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~  275 (501)
                      .+. ..|...  +.+++++    +++.++++.+....|-.|.++....    .... .....+..-.+..|+. ....++
T Consensus       150 ~~~-~~h~~~~~~ns~~~s----nd~~~~~~Vgds~~Vf~y~id~~se----y~~~~~~a~t~D~gF~~S~s~-~~~~FA  219 (344)
T KOG4532|consen  150 NKF-AVHNQNLTQNSLHYS----NDPSWGSSVGDSRRVFRYAIDDESE----YIENIYEAPTSDHGFYNSFSE-NDLQFA  219 (344)
T ss_pred             ccc-eeeccccceeeeEEc----CCCceEEEecCCCcceEEEeCCccc----eeeeeEecccCCCceeeeecc-CcceEE
Confidence            222 224333  7778876    8999999999999999999987653    1122 2333344445678885 677899


Q ss_pred             EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC----CeEEEEeC-CcEEEEEcCCCceEeeecc-------
Q 010784          276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE----SMLYIASG-SSVVTIDLRTMQKVMTPAI-------  343 (501)
Q Consensus       276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~i~~~d~~~~~~~~~~~~-------  343 (501)
                      ++..||++.|||++...............+.+....+.++.    +.+++..+ +.+.+.|++++.....+..       
T Consensus       220 v~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~  299 (344)
T KOG4532|consen  220 VVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERK  299 (344)
T ss_pred             EEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccc
Confidence            99999999999999875544333333445677777776663    23333333 4899999999876544432       


Q ss_pred             CCC-cEEEEEEcCCCcEEEEEcCCcEEEEecCCC
Q 010784          344 CKP-ILHSFSIMPSKSLICTGGIGKAMTWDIRRS  376 (501)
Q Consensus       344 ~~~-~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~  376 (501)
                      |.. .|..-.|+.++.-+.+.+++.+.-|++.+.
T Consensus       300 ~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr  333 (344)
T KOG4532|consen  300 HNTQHIFGTNFNNENESNDVKNELQGAEYNILSR  333 (344)
T ss_pred             ccccccccccccCCCcccccccchhhheeecccc
Confidence            222 267777777777777777666666766653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.03  E-value=1.6e-06  Score=78.74  Aligned_cols=260  Identities=8%  Similarity=-0.005  Sum_probs=156.4

Q ss_pred             eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC----------CCceEEec--CCcee
Q 010784          132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC----------DHSIRLWW--KGSCQ  199 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----------dg~i~vwd--~~~~~  199 (501)
                      +.+.+.|..+. +.+.++..-..+-. + ++|             |++.|+.+..          +..|.+||  +.+.+
T Consensus        27 ~~v~ViD~~~~-~v~g~i~~G~~P~~-~-~sp-------------Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~   90 (352)
T TIGR02658        27 TQVYTIDGEAG-RVLGMTDGGFLPNP-V-VAS-------------DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI   90 (352)
T ss_pred             ceEEEEECCCC-EEEEEEEccCCCce-e-ECC-------------CCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence            88999999884 66666654333322 4 788             7777766655          78999999  67777


Q ss_pred             eeccCCCC-------ceEEEEeeecCCCCCCEEEEee-C-CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784          200 RCFKGHNG-------PVSTLSDKLLGDGSGKILASGG-E-DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK  270 (501)
Q Consensus       200 ~~~~~h~~-------~v~~l~~s~~~~~~~~~l~sg~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  270 (501)
                      ..+.....       .-..++++    ++|++|+... . +..|.+.|+.+++.      +..+.- .+...-...+  +
T Consensus        91 ~~i~~p~~p~~~~~~~~~~~~ls----~dgk~l~V~n~~p~~~V~VvD~~~~kv------v~ei~v-p~~~~vy~t~--e  157 (352)
T TIGR02658        91 ADIELPEGPRFLVGTYPWMTSLT----PDNKTLLFYQFSPSPAVGVVDLEGKAF------VRMMDV-PDCYHIFPTA--N  157 (352)
T ss_pred             eEEccCCCchhhccCccceEEEC----CCCCEEEEecCCCCCEEEEEECCCCcE------EEEEeC-CCCcEEEEec--C
Confidence            66653211       22356665    8999988766 3 68999999999873      444443 1121111221  1


Q ss_pred             CeEEEEEeCCCeEEEEECCCCccccceecccce-----ecCCCceeeecCCCeEEEEeCCcEEEEEcCCC-----ceEee
Q 010784          271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-----SVPGVPVDMKCHESMLYIASGSSVVTIDLRTM-----QKVMT  340 (501)
Q Consensus       271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----~~~~~  340 (501)
                      .. +..-+.||......+.+...... .....+     .....+.-...++..++++..+.+.+.|+...     +....
T Consensus       158 ~~-~~~~~~Dg~~~~v~~d~~g~~~~-~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~  235 (352)
T TIGR02658       158 DT-FFMHCRDGSLAKVGYGTKGNPKI-KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEA  235 (352)
T ss_pred             Cc-cEEEeecCceEEEEecCCCceEE-eeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeee
Confidence            21 22333455555443332211110 000000     00011211222566777777889999995433     22222


Q ss_pred             ecc-------CCCcEEEEEEcCCCcEEEEEc----------CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784          341 PAI-------CKPILHSFSIMPSKSLICTGG----------IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP  402 (501)
Q Consensus       341 ~~~-------~~~~v~~v~~~~~~~~l~~~~----------~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  402 (501)
                      +..       ..+.+.-++++++++.++...          .++ |.++|..+.+.+      ..+.. ...+..++++|
T Consensus       236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi------~~i~v-G~~~~~iavS~  308 (352)
T TIGR02658       236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL------RKIEL-GHEIDSINVSQ  308 (352)
T ss_pred             ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE------EEEeC-CCceeeEEECC
Confidence            211       233445599999988877742          224 999999987654      55543 45789999999


Q ss_pred             C-e-EEEEec-CCCcEEEEeCCCccccccc
Q 010784          403 Y-K-IVTGGR-DDLRINIWETDTGMLANSL  429 (501)
Q Consensus       403 ~-~-~l~~gs-~dg~i~iwd~~~~~~~~~~  429 (501)
                      + + ++.+.. .++.|.++|..+++.+.++
T Consensus       309 Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       309 DAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            9 5 555433 6788999999999999888

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=1.9e-07  Score=89.08  Aligned_cols=242  Identities=10%  Similarity=-0.006  Sum_probs=131.3

Q ss_pred             eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcE---EEEeeCCCceEEe--c-CCceeeeccCC
Q 010784          132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV---LVTSSCDHSIRLW--W-KGSCQRCFKGH  205 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~---l~s~~~dg~i~vw--d-~~~~~~~~~~h  205 (501)
                      ..+.+.|...  .-.+.+......+..-+|+|             ||+.   +++...+|.-.||  + .+.....+...
T Consensus       165 ~~l~~~d~dG--~~~~~lt~~~~~~~sP~wSP-------------DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~  229 (428)
T PRK01029        165 GELWSVDYDG--QNLRPLTQEHSLSITPTWMH-------------IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL  229 (428)
T ss_pred             ceEEEEcCCC--CCceEcccCCCCcccceEcc-------------CCCceEEEEEEccCCCceEEEEECCCCCceEeecC
Confidence            3566666653  33344555566677788998             6653   2345555554444  5 33333333333


Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeC-CC----cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-C
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGE-DA----TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-K  279 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~  279 (501)
                      .+.....+|+    |+|+.|+..+. +|    .+..|++..+...   ........+.......+|+| +++.|+..+ .
T Consensus       230 ~g~~~~p~wS----PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g---~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~  301 (428)
T PRK01029        230 QGNQLMPTFS----PRKKLLAFISDRYGNPDLFIQSFSLETGAIG---KPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNK  301 (428)
T ss_pred             CCCccceEEC----CCCCEEEEEECCCCCcceeEEEeecccCCCC---cceEeecCCCCCcCCeEECC-CCCEEEEEECC
Confidence            4445567887    89988776542 22    3444676653110   01222222223445678998 666555544 4


Q ss_pred             CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcE
Q 010784          280 DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSL  359 (501)
Q Consensus       280 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~  359 (501)
                      +|...+|.+....                                         .+.....+..+...+....|+|||+.
T Consensus       302 ~g~~~ly~~~~~~-----------------------------------------~g~~~~~lt~~~~~~~~p~wSPDG~~  340 (428)
T PRK01029        302 DGRPRIYIMQIDP-----------------------------------------EGQSPRLLTKKYRNSSCPAWSPDGKK  340 (428)
T ss_pred             CCCceEEEEECcc-----------------------------------------cccceEEeccCCCCccceeECCCCCE
Confidence            5654444332100                                         00001122223345667899999998


Q ss_pred             EEEEcC--C-c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEE-EEecC--CCcEEEEeCCCccccccccc
Q 010784          360 ICTGGI--G-K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIV-TGGRD--DLRINIWETDTGMLANSLLC  431 (501)
Q Consensus       360 l~~~~~--d-~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l-~~gs~--dg~i~iwd~~~~~~~~~~~~  431 (501)
                      |+..+.  + . |.+||+.+++.       ..+......+....|+|+ +.+ .++..  ...|.++|+.+++...... 
T Consensus       341 Laf~~~~~g~~~I~v~dl~~g~~-------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-  412 (428)
T PRK01029        341 IAFCSVIKGVRQICVYDLATGRD-------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-  412 (428)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCe-------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-
Confidence            886652  2 3 99999988753       223222345677899999 444 44332  3568888988776543331 


Q ss_pred             CCCCCCCcceeeeEeeccc
Q 010784          432 NYPEEADISTGCSAMAVSG  450 (501)
Q Consensus       432 ~~~~~~~~~v~~~~~s~~g  450 (501)
                           ....+...+|+|-.
T Consensus       413 -----~~g~~~~p~Ws~~~  426 (428)
T PRK01029        413 -----GSGEKRFPSWGAFP  426 (428)
T ss_pred             -----CCCcccCceecCCC
Confidence                 12335566777643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=1.7e-07  Score=89.32  Aligned_cols=327  Identities=12%  Similarity=0.066  Sum_probs=187.8

Q ss_pred             CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcC-cEEEEeeCCCceEEec--CCc
Q 010784          121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE-NVLVTSSCDHSIRLWW--KGS  197 (501)
Q Consensus       121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~vwd--~~~  197 (501)
                      ....+|++...|.|.+||...+ ..+..+..|.++|..+.|-+.-          .+. ..|+.-....++.+||  +|+
T Consensus        78 ~~lliAsaD~~GrIil~d~~~~-s~~~~l~~~~~~~qdl~W~~~r----------d~Srd~LlaIh~ss~lvLwntdtG~  146 (1062)
T KOG1912|consen   78 SQLLIASADISGRIILVDFVLA-SVINWLSHSNDSVQDLCWVPAR----------DDSRDVLLAIHGSSTLVLWNTDTGE  146 (1062)
T ss_pred             cceeEEeccccCcEEEEEehhh-hhhhhhcCCCcchhheeeeecc----------CcchheeEEecCCcEEEEEEccCCc
Confidence            4567899999999999999985 6777889999999999998732          133 5666666678999997  776


Q ss_pred             eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEec---------------cCCCc------------------
Q 010784          198 CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSL---------------SSSGK------------------  244 (501)
Q Consensus       198 ~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~---------------~~~~~------------------  244 (501)
                      ..-..........|+.+-|+   +.+.+..-+..|.+.+-+.               .+...                  
T Consensus       147 k~Wk~~ys~~iLs~f~~DPf---d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~  223 (1062)
T KOG1912|consen  147 KFWKYDYSHEILSCFRVDPF---DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTST  223 (1062)
T ss_pred             eeeccccCCcceeeeeeCCC---CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCC
Confidence            66555444445556666432   2222222223333333322               11100                  


Q ss_pred             cc-----------------------------------cccceeeccCCCCceeEEEEeec-CCeEEEEEeCCCeEEEEEC
Q 010784          245 RG-----------------------------------QQALKATLYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDT  288 (501)
Q Consensus       245 ~~-----------------------------------~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~  288 (501)
                      +.                                   ...++....-..+.+.-+.+.|. ....|++...||.+.+|-.
T Consensus       224 ~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  224 PASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             CcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence            00                                   00011111112223334445553 2446788889999999976


Q ss_pred             CCCccccceec----------ccce--ecCCCceeeecCCC----eEEEEeCCcEEEEEcCCCceE--------------
Q 010784          289 STSSAVRSSCC----------VGMT--SVPGVPVDMKCHES----MLYIASGSSVVTIDLRTMQKV--------------  338 (501)
Q Consensus       289 ~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~~~----~~~~~~~~~i~~~d~~~~~~~--------------  338 (501)
                      +..........          .+..  ...-.+......|.    ..++.+.+...+|.+++++..              
T Consensus       304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf  383 (1062)
T KOG1912|consen  304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPF  383 (1062)
T ss_pred             eccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccc
Confidence            65322111100          0000  00111111111111    112223344555555433210              


Q ss_pred             -----------------eeeccCCCcEEEEEEcC-----------CC-------cEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784          339 -----------------MTPAICKPILHSFSIMP-----------SK-------SLICTGGIGK-AMTWDIRRSQDAVKP  382 (501)
Q Consensus       339 -----------------~~~~~~~~~v~~v~~~~-----------~~-------~~l~~~~~d~-i~iwd~~~~~~~~~~  382 (501)
                                       ....+|....++....|           .+       .+++.|...| |.++|+.++...   
T Consensus       384 ~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~---  460 (1062)
T KOG1912|consen  384 DFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVA---  460 (1062)
T ss_pred             cccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhh---
Confidence                             00112333333333322           22       2678888888 999999997665   


Q ss_pred             CCcccccCcccCeEEEEecCC-eEEEEec---------CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784          383 QPMAELDGHVGSVTQLHMDPY-KIVTGGR---------DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR  452 (501)
Q Consensus       383 ~~~~~~~~h~~~v~~l~~~~~-~~l~~gs---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  452 (501)
                         ..+..|...|.++.|-.. .++..+.         .-+.+.+-|+++|.... |.+. .+....+|..+..|..|+|
T Consensus       461 ---~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~-fR~l-~~~despI~~irvS~~~~y  535 (1062)
T KOG1912|consen  461 ---ASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR-FRGL-QKPDESPIRAIRVSSSGRY  535 (1062)
T ss_pred             ---hhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc-cccC-CCCCcCcceeeeecccCce
Confidence               788899999999999888 5554432         22457788999885432 2111 1345788999999999999


Q ss_pred             EEEeecCCCceEEEeeccC
Q 010784          453 IVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       453 l~s~~~d~~g~i~~w~~~~  471 (501)
                      |+..-  .+..+.+||+..
T Consensus       536 Lai~F--r~~plEiwd~kt  552 (1062)
T KOG1912|consen  536 LAILF--RREPLEIWDLKT  552 (1062)
T ss_pred             EEEEe--cccchHHHhhcc
Confidence            99998  669999999754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.00  E-value=9.1e-07  Score=91.54  Aligned_cols=328  Identities=15%  Similarity=0.105  Sum_probs=196.2

Q ss_pred             CceEEee--CCcEEEeecCCee--eEEEEeccccc--ccceecc-----cCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          113 HDHILLD--NNDIFSTQGSSIQ--NIKIDNFLSES--YYRATLS-----DHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       113 i~~~~~~--~~~~~~~~g~~d~--~i~vw~~~~~~--~~~~~~~-----~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      +...+++  .+..+++++....  .+.+.....+.  +.+..+.     ...+.|.++.|.+             +...+
T Consensus        24 ~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~-------------d~~~l   90 (928)
T PF04762_consen   24 ITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLA-------------DSESL   90 (928)
T ss_pred             cceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEecc-------------CCCcE
Confidence            4445555  4566777776544  55555544322  1222222     3346788999888             78889


Q ss_pred             EEeeCCCceEEe----c-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC-------------CC
Q 010784          182 VTSSCDHSIRLW----W-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS-------------SG  243 (501)
Q Consensus       182 ~s~~~dg~i~vw----d-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~-------------~~  243 (501)
                      +.+..+|.|.+.    + ....+...-.-...|.+++||    ||++.|+....++++.+.+.+=             +.
T Consensus        91 ~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WS----PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~  166 (928)
T PF04762_consen   91 CIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWS----PDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGE  166 (928)
T ss_pred             EEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEEC----CCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCC
Confidence            999999999999    5 333333333456789999998    8999999999899887764210             00


Q ss_pred             ----------c-------cccc------cc------eeeccCCCCceeEEEEeecCCeEEEEEeC---C---CeEEEEEC
Q 010784          244 ----------K-------RGQQ------AL------KATLYGHEKPIKLMSVAGHKSFLLVTISK---D---SKVRVWDT  288 (501)
Q Consensus       244 ----------~-------~~~~------~~------~~~~~~~~~~v~~l~~~~~~~~~l~s~s~---d---g~v~vwd~  288 (501)
                                +       .++.      .+      ...+. +...-..|+|-. ||.++++.+.   .   ..++||+-
T Consensus       167 ~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~R  244 (928)
T PF04762_consen  167 SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSR  244 (928)
T ss_pred             CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECC
Confidence                      0       0000      00      00111 233345677874 8889888774   2   57999997


Q ss_pred             CCCccccceecccceecCCCceeeecCCCeEEEEeCC------cEEEEEcCCCceEeeec----cCCCcEEEEEEcCCCc
Q 010784          289 STSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS------SVVTIDLRTMQKVMTPA----ICKPILHSFSIMPSKS  358 (501)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~d~~~~~~~~~~~----~~~~~v~~v~~~~~~~  358 (501)
                      + |......+     ...+..-.++|.|.+.++|+..      .|.+|. ++|-....|.    .....|..+.|++|+.
T Consensus       245 e-G~L~stSE-----~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~  317 (928)
T PF04762_consen  245 E-GELQSTSE-----PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSE  317 (928)
T ss_pred             C-ceEEeccc-----cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCC
Confidence            6 43322111     4455556777888777777542      344444 3333322222    3456799999999999


Q ss_pred             EEEEEcCCcEEEEecCCCCCCCCCCCcccccC-cccCeEEEEecCC--eEEEEecCCCcEEEEeCC----Ccc-------
Q 010784          359 LICTGGIGKAMTWDIRRSQDAVKPQPMAELDG-HVGSVTQLHMDPY--KIVTGGRDDLRINIWETD----TGM-------  424 (501)
Q Consensus       359 ~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~----~~~-------  424 (501)
                      .||.-..+.|.+|-..+..-    ...+++.. ....+..+.|+|.  ..+...+.+|.+..+++.    .+.       
T Consensus       318 iLAv~~~~~vqLWt~~NYHW----YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~  393 (928)
T PF04762_consen  318 ILAVWLEDRVQLWTRSNYHW----YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDN  393 (928)
T ss_pred             EEEEEecCCceEEEeeCCEE----EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCc
Confidence            99998888899999887541    11133322 1234455889986  333333455666554432    111       


Q ss_pred             -cccc----------ccc--------CCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          425 -LANS----------LLC--------NYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       425 -~~~~----------~~~--------~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                       .+..          |..        +..-.-...|..++|++++..+++-.  .+|.|.+|.+...
T Consensus       394 g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~--~d~~l~~~~~~~~  458 (928)
T PF04762_consen  394 GTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLT--SDGSLSIYEWDLK  458 (928)
T ss_pred             eEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEE--CCCCEEEEEecCC
Confidence             0000          000        00012356799999999998888887  5698998885543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.99  E-value=4.8e-07  Score=76.59  Aligned_cols=233  Identities=14%  Similarity=0.073  Sum_probs=127.5

Q ss_pred             eEEeeCCcEEEeecCCeeeEEEEecccccc-ccee---cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          115 HILLDNNDIFSTQGSSIQNIKIDNFLSESY-YRAT---LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       115 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~-~~~~---~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      .++.+++|+++|.-. |..|.|-..+.+.. ++..   .+...-.=+-++|||             |+.+||.+...|+|
T Consensus         2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-------------D~tlLa~a~S~G~i   67 (282)
T PF15492_consen    2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-------------DCTLLAYAESTGTI   67 (282)
T ss_pred             ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-------------CCcEEEEEcCCCeE
Confidence            356788888888654 45555544443211 1111   111112235566766             89999999999999


Q ss_pred             EEec-CCceeeeccC-------CCCceEEEEeeecCCCC---CCEEEEeeCCCcEEEEeccCCCccccccceee--c-cC
Q 010784          191 RLWW-KGSCQRCFKG-------HNGPVSTLSDKLLGDGS---GKILASGGEDATVRLWSLSSSGKRGQQALKAT--L-YG  256 (501)
Q Consensus       191 ~vwd-~~~~~~~~~~-------h~~~v~~l~~s~~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~-~~  256 (501)
                      +++| .|..+..+..       -...|..|.|.... .+   ...|+.-..+|.++-+-+..+... .......  + ..
T Consensus        68 ~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~-~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q-~y~e~hsfsf~~~  145 (282)
T PF15492_consen   68 RVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYK-KSAQWSYELLVINYRGQLRSYLVSVGTNQ-GYQENHSFSFSSH  145 (282)
T ss_pred             EEEecccceeEEcCcccccCCccccceeeeEeeccc-cccccceeEEEEeccceeeeEEEEcccCC-cceeeEEEEeccc
Confidence            9999 6666555432       23567778775221 11   124555677888888876432110 0011222  2 23


Q ss_pred             CCCceeEEEEeecCCeEEEEEeC-CC----------eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISK-DS----------KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS  325 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~-dg----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (501)
                      +...|.++.++| ..++|+.|+. ..          -+..|.+-++.+-...              +...++ .+.....
T Consensus       146 yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~--------------v~~~~~-~~~~~~~  209 (282)
T PF15492_consen  146 YPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ--------------VTSSED-DITASSK  209 (282)
T ss_pred             CCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE--------------ccccCc-ccccccc
Confidence            467899999998 4455555543 22          1334443333211000              000000 0000111


Q ss_pred             cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                      +..++.+-+.+...........|..|..||||++|++....| |.+|++.+-+..
T Consensus       210 ~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  210 RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             ccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            222333322222222223467899999999999999999888 999999986543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=2e-07  Score=85.57  Aligned_cols=280  Identities=18%  Similarity=0.175  Sum_probs=171.4

Q ss_pred             CCceEEeeCCcEEEeecCC----------eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          112 PHDHILLDNNDIFSTQGSS----------IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~----------d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      .+.++.|+|.|.++.+=-.          ...+.+|+.+++ .....+......-++..|+.             |.. +
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~-~~~s~~q~k~Q~~W~~qfs~-------------dEs-l  139 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG-VQRSQIQKKMQNGWVPQFSI-------------DES-L  139 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccc-eehhheehhhhcCccccccc-------------chh-h
Confidence            6888999999998876432          245678888874 44444443333336788887             433 3


Q ss_pred             EEeeCCCceEEecCCc-eeeeccCCCCceEEEEeeecCCCCCCEEEE-----eeCCCcEEEEeccCCCccccccceeecc
Q 010784          182 VTSSCDHSIRLWWKGS-CQRCFKGHNGPVSTLSDKLLGDGSGKILAS-----GGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       182 ~s~~~dg~i~vwd~~~-~~~~~~~h~~~v~~l~~s~~~~~~~~~l~s-----g~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      +.--..+.+.+|+.+. ....-+-|...|+.+.++|.+  ....+++     ++.-+.|+||................++
T Consensus       140 ~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp--~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk  217 (566)
T KOG2315|consen  140 AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGP--EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK  217 (566)
T ss_pred             hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCC--CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc
Confidence            3333456799998322 122223467889999988532  2234443     4566789999887433211111111111


Q ss_pred             CCCCceeEEEEeecCCeEEEEEeC--C---------CeEEEEECCCCccccceecccceecCCCceeeecCCCe--EEEE
Q 010784          256 GHEKPIKLMSVAGHKSFLLVTISK--D---------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIA  322 (501)
Q Consensus       256 ~~~~~v~~l~~~~~~~~~l~s~s~--d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  322 (501)
                        .+.| .+.|++....+|+.++.  |         .++++.++...      .+.....-.+.+.++.|+++.  ..++
T Consensus       218 --adkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~------s~~V~L~k~GPVhdv~W~~s~~EF~Vv  288 (566)
T KOG2315|consen  218 --ADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE------SVSVPLLKEGPVHDVTWSPSGREFAVV  288 (566)
T ss_pred             --ccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc------eEEEecCCCCCceEEEECCCCCEEEEE
Confidence              1222 35666544445444432  2         35777777733      222333557788888888776  4444


Q ss_pred             eC---CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC---c-EEEEecCCCCCCCCCCCcccccCcccCe
Q 010784          323 SG---SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG---K-AMTWDIRRSQDAVKPQPMAELDGHVGSV  395 (501)
Q Consensus       323 ~~---~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v  395 (501)
                      -|   ..+.++|++- ..+..+  .+++=+.+-|+|.|++++.++-|   + |-+||..+.+++      ..+..  ..-
T Consensus       289 yGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i------~~~~a--~~t  357 (566)
T KOG2315|consen  289 YGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI------AKFKA--ANT  357 (566)
T ss_pred             EecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc------ccccc--CCc
Confidence            44   3899999864 334433  35677889999999999998844   3 999999996554      55553  234


Q ss_pred             EEEEecCC-eEEEEecC------CCcEEEEeCCCccccccc
Q 010784          396 TQLHMDPY-KIVTGGRD------DLRINIWETDTGMLANSL  429 (501)
Q Consensus       396 ~~l~~~~~-~~l~~gs~------dg~i~iwd~~~~~~~~~~  429 (501)
                      +-+.|+|+ +++++++.      |+.++||+.. |..+...
T Consensus       358 t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~  397 (566)
T KOG2315|consen  358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEK  397 (566)
T ss_pred             eEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehh
Confidence            56789999 66655443      7889999974 6655443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.98  E-value=1.4e-06  Score=90.30  Aligned_cols=319  Identities=13%  Similarity=0.119  Sum_probs=187.0

Q ss_pred             CCCCceEEeeCCcEEEeecCC------eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          110 AKPHDHILLDNNDIFSTQGSS------IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~g~~------d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ...-..|+|-.||.|+|+.+.      ...++||+-+  +.+..+-+.-.+--.+++|-|             .|+++|+
T Consensus       209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrP-------------sG~lIA~  273 (928)
T PF04762_consen  209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEPVDGLEGALSWRP-------------SGNLIAS  273 (928)
T ss_pred             CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEeccccCCCccCCccCCC-------------CCCEEEE
Confidence            335678889999999998775      3789999976  244333333333345677877             8999998


Q ss_pred             eeC---CCceEEec-CCceeeec----cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          184 SSC---DHSIRLWW-KGSCQRCF----KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       184 ~~~---dg~i~vwd-~~~~~~~~----~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      ...   ...|.+|. +|-....|    ......|..+.|+    .++..|+..-.|. |.+|...+-.    +.+.+.+.
T Consensus       274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn----~ds~iLAv~~~~~-vqLWt~~NYH----WYLKqei~  344 (928)
T PF04762_consen  274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWN----SDSEILAVWLEDR-VQLWTRSNYH----WYLKQEIR  344 (928)
T ss_pred             EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEEC----CCCCEEEEEecCC-ceEEEeeCCE----EEEEEEEE
Confidence            875   35577776 44333332    2456789999996    8999999977665 9999887643    22333333


Q ss_pred             C-CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          256 G-HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       256 ~-~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                      - ....+..+.|+|.+...|...+.+|.+..++..-.....             ......+.....+..|..+.+-.++.
T Consensus       345 ~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s-------------~~~~~~D~g~vaVIDG~~lllTpf~~  411 (928)
T PF04762_consen  345 FSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS-------------PGSSPNDNGTVAVIDGNKLLLTPFRR  411 (928)
T ss_pred             ccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec-------------CCCCccCceEEEEEeCCeEEEecccc
Confidence            2 233455599999888888888887888776653211000             00001122234555667888887776


Q ss_pred             CceE-----eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC--CCCCCcccc----------cCcccCeE
Q 010784          335 MQKV-----MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA--VKPQPMAEL----------DGHVGSVT  396 (501)
Q Consensus       335 ~~~~-----~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~--~~~~~~~~~----------~~h~~~v~  396 (501)
                      ....     ..+. ....|.+++|++++..+++-..++ |.+|........  ..+.....+          ......+.
T Consensus       412 a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (928)
T PF04762_consen  412 AVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLR  490 (928)
T ss_pred             cCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEE
Confidence            5432     2222 367899999999987777777666 888875443211  001111111          11234567


Q ss_pred             EEEecCC-eEEEEecC---CCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          397 QLHMDPY-KIVTGGRD---DLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       397 ~l~~~~~-~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      .++|... .+++....   ...+.++++...+........  ......+..+...++...++.-.  .+|.+...+..
T Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~q~--~~G~v~~~~~~  564 (928)
T PF04762_consen  491 QLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESS--TEVDGVVLIISSSPDSGSLYIQT--NDGKVFQLSSD  564 (928)
T ss_pred             EEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEE--eccCceEEEEeeCCCCcEEEEEE--CCCEEEEeecC
Confidence            7888766 54444433   367888887443221111100  11133344444444444344444  45776655433

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.97  E-value=1.1e-06  Score=79.26  Aligned_cols=138  Identities=8%  Similarity=0.064  Sum_probs=105.5

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC-ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH-SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG  228 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg  228 (501)
                      +|.+.|.-..+..             +++-++.|..|| .+-|+| .+..++.+...-+.|.++..+    ++|++++.+
T Consensus       357 ~~~~~VrY~r~~~-------------~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs----~dGK~~vva  419 (668)
T COG4946         357 GKKGGVRYRRIQV-------------DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVS----PDGKKVVVA  419 (668)
T ss_pred             CCCCceEEEEEcc-------------CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEc----CCCcEEEEE
Confidence            6778888888876             677899999999 899999 666777888888999999996    899999999


Q ss_pred             eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC----eEEEEECCCCccccceeccccee
Q 010784          229 GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS----KVRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg----~v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                      .....+-+.|++++..      ...-+...+-|+.+.|+| ++..++-+--+|    .|+++|+.+++.....      .
T Consensus       420 Ndr~el~vididngnv------~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT------T  486 (668)
T COG4946         420 NDRFELWVIDIDNGNV------RLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT------T  486 (668)
T ss_pred             cCceEEEEEEecCCCe------eEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEec------C
Confidence            9999999999999873      333345667899999998 788888776554    5899999988643221      3


Q ss_pred             cCCCceeeecCCCe
Q 010784          305 VPGVPVDMKCHESM  318 (501)
Q Consensus       305 ~~~~~~~~~~~~~~  318 (501)
                      ..+.-++.+++++.
T Consensus       487 ~ta~DfsPaFD~d~  500 (668)
T COG4946         487 PTAYDFSPAFDPDG  500 (668)
T ss_pred             CcccccCcccCCCC
Confidence            33444445555543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.96  E-value=8.2e-07  Score=80.71  Aligned_cols=275  Identities=11%  Similarity=0.110  Sum_probs=169.4

Q ss_pred             cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEE
Q 010784          149 LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILA  226 (501)
Q Consensus       149 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~  226 (501)
                      +..-.-++..+.|||             .|.+|++....| |.+|.  ....+..+.  ...|..+.|+    |.+.+|.
T Consensus        28 ~~~~~~p~~~~~~SP-------------~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fS----P~~kYL~   87 (561)
T COG5354          28 FESENWPVAYVSESP-------------LGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFS----PNEKYLV   87 (561)
T ss_pred             ccccCcchhheeecC-------------cchheehhhccc-eEEccccchhheeeee--cCCceecccC----cccceee
Confidence            333556788888888             789999877654 88998  333333333  3468889997    8899998


Q ss_pred             EeeCCC---------------cEEEEeccCCCccccccceeeccCCCCc--ee-EEEEeecCCeEEEEEeCCCeEEEEEC
Q 010784          227 SGGEDA---------------TVRLWSLSSSGKRGQQALKATLYGHEKP--IK-LMSVAGHKSFLLVTISKDSKVRVWDT  288 (501)
Q Consensus       227 sg~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~-~l~~~~~~~~~l~s~s~dg~v~vwd~  288 (501)
                      +=+..+               .+.+||..++.      .+..+.....+  .+ -+.|+. +..+++-- ....++++++
T Consensus        88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~------iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~  159 (561)
T COG5354          88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGM------IVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI  159 (561)
T ss_pred             eeccCCccChhhccCCccccCceeEEeccCce------eEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec
Confidence            865433               48999999986      46666665554  44 567775 44444433 3356999997


Q ss_pred             CCCccccceecccceecCCCceeeecCCC-----eEEEEeC-----CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc
Q 010784          289 STSSAVRSSCCVGMTSVPGVPVDMKCHES-----MLYIASG-----SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS  358 (501)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~  358 (501)
                       +......  ...... ...+..+.++|.     ..+.+..     .++++|.+..+..+.+..-..-.=..+.|.+.|+
T Consensus       160 -t~n~~~~--p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~  235 (561)
T COG5354         160 -TDNIEEH--PFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK  235 (561)
T ss_pred             -CCccccC--chhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc
Confidence             4332110  000001 122223333332     2333321     3788888887666544433333334678888888


Q ss_pred             EEEEEc------------CCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eE-EEEecCCCcEEEEeCCCc
Q 010784          359 LICTGG------------IGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KI-VTGGRDDLRINIWETDTG  423 (501)
Q Consensus       359 ~l~~~~------------~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~-l~~gs~dg~i~iwd~~~~  423 (501)
                      ++++-.            +.+++|++++....       .....-.++|...+|.|.  ++ +++|-.+-.+.++|++..
T Consensus       236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-------~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSI-------PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             eEEEEEEEeeecccceeccceEEEEeeccccc-------ceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence            776431            12388888884332       222245789999999988  33 334468889999999865


Q ss_pred             ccccccccCCCCCCCcceeeeEeeccccEEEEeecC-CCceEEEeecc
Q 010784          424 MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFS  470 (501)
Q Consensus       424 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~  470 (501)
                       +...+.       ...-+.+.|+|.+++++.++.| --|.|-+||..
T Consensus       309 -l~~~~P-------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         309 -LRFYFP-------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             -eEEecC-------CcccccccccCcccEEEEecCCccccceEEeccC
Confidence             444442       3344567788998888887765 34667777743

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.96  E-value=2.8e-08  Score=82.16  Aligned_cols=199  Identities=16%  Similarity=0.153  Sum_probs=113.2

Q ss_pred             eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc------cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCe
Q 010784          209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK------RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSK  282 (501)
Q Consensus       209 v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~  282 (501)
                      ++.+.++     ....|+++..++.+......++..      .........+..|.++-.+-..+- .++.++++..||.
T Consensus        39 ~~~~~~v-----~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~  112 (319)
T KOG4714|consen   39 LSKVSLS-----AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTM-TDNRVCIGYADGS  112 (319)
T ss_pred             EEEeech-----hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccc-cCCceEecCCCce
Confidence            5666663     455677777776665554433211      000012223333333222222221 3557999999999


Q ss_pred             EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--------CcEEEEEcCCCceEeeeccCCCcEEEEEEc
Q 010784          283 VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--------SSVVTIDLRTMQKVMTPAICKPILHSFSIM  354 (501)
Q Consensus       283 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~  354 (501)
                      +.+++.+.-...........  ....  +........++.++        +..+.|+++..+....-......|.+++-+
T Consensus       113 ~~v~s~~~~~~~~~~i~~~~--~~~a--s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~h  188 (319)
T KOG4714|consen  113 LAVFSTDKDLALMSRIPSIH--SGSA--SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSH  188 (319)
T ss_pred             EEEEechHHHhhhhhccccc--cccc--ccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCC
Confidence            99999876221111111000  0000  11111111222222        245556655444332222223448899999


Q ss_pred             CC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCC
Q 010784          355 PS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       355 ~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~  422 (501)
                      |. .+++++|++|+ +-+||.++..     .+...+..|+.+++.+.|+|.  .-|.+++.||.+-.||..+
T Consensus       189 p~qq~~v~cgt~dg~~~l~d~rn~~-----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  189 PAQQHLVCCGTDDGIVGLWDARNVA-----MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccccEEEEecCCCeEEEEEccccc-----chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            86 56777788888 9999999874     456788899999999999998  4444457999999999763

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.94  E-value=8.9e-10  Score=66.68  Aligned_cols=40  Identities=13%  Similarity=0.316  Sum_probs=38.5

Q ss_pred             ccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHH
Q 010784           23 LNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQR   62 (501)
Q Consensus        23 Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~   62 (501)
                      ||.|++.+||.||++.|+.++++|||.|+.++.++.+|+.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999974

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.92  E-value=8.3e-06  Score=71.46  Aligned_cols=281  Identities=10%  Similarity=0.028  Sum_probs=169.3

Q ss_pred             CCceEEec----CCce-eeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---CcEEEEeccCCCccccccceeeccCCC
Q 010784          187 DHSIRLWW----KGSC-QRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---ATVRLWSLSSSGKRGQQALKATLYGHE  258 (501)
Q Consensus       187 dg~i~vwd----~~~~-~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~  258 (501)
                      +.-|.+|+    +++. ...+..+.+..+-|+|+    ++++.|+++-.+   |.|..|.++...-  ....+.......
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~----~~~~~LY~v~~~~~~ggvaay~iD~~~G--~Lt~ln~~~~~g   88 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVN----PDQRHLYVVNEPGEEGGVAAYRIDPDDG--RLTFLNRQTLPG   88 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEEC----CCCCEEEEEEecCCcCcEEEEEEcCCCC--eEEEeeccccCC
Confidence            46699997    2221 12233567788899996    888899988654   7788888875311  111222222233


Q ss_pred             CceeEEEEeecCCeEEEEEe-CCCeEEEEECCC-Cccccceecccce-------ecCCCceeeecCCCeEEEEeC----C
Q 010784          259 KPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTST-SSAVRSSCCVGMT-------SVPGVPVDMKCHESMLYIASG----S  325 (501)
Q Consensus       259 ~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~  325 (501)
                      .+-+.+++++ ++++++++. ..|.|.++-++. +............       .....+-...+.++..++..-    +
T Consensus        89 ~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          89 SPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             CCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence            3447889986 666666665 568999999866 3322221111111       112224445556665443332    3


Q ss_pred             cEEEEEcCCCceEeeec---cCCCcEEEEEEcCCCcEEEEEcC-Cc-EEEEecCCCC-CCCCCCCcccccC---cccCeE
Q 010784          326 SVVTIDLRTMQKVMTPA---ICKPILHSFSIMPSKSLICTGGI-GK-AMTWDIRRSQ-DAVKPQPMAELDG---HVGSVT  396 (501)
Q Consensus       326 ~i~~~d~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~~~-d~-i~iwd~~~~~-~~~~~~~~~~~~~---h~~~v~  396 (501)
                      .|.+|++..++....-.   ........|.|+|++++..+..+ ++ |.+|...... .....+.+.++..   -.....
T Consensus       168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a  247 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA  247 (346)
T ss_pred             eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence            89999999776532111   23556789999999999888883 34 9999888741 1101111122211   134667


Q ss_pred             EEEecCC-eEEEEec-CCCcEEEEeCCCc-ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          397 QLHMDPY-KIVTGGR-DDLRINIWETDTG-MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       397 ~l~~~~~-~~l~~gs-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      .|.++++ ++|.++. ....|-+|.+... ..+..+. .. ..+...-....|+++|++|++++.+ ...|.++..+...
T Consensus       248 aIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~-~~-~teg~~PR~F~i~~~g~~Liaa~q~-sd~i~vf~~d~~T  324 (346)
T COG2706         248 AIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG-IT-PTEGQFPRDFNINPSGRFLIAANQK-SDNITVFERDKET  324 (346)
T ss_pred             EEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE-Ee-ccCCcCCccceeCCCCCEEEEEccC-CCcEEEEEEcCCC
Confidence            8889999 7777642 2346888877653 2232221 11 1223446788999999999999874 5569999988776


Q ss_pred             ccee
Q 010784          474 CPVL  477 (501)
Q Consensus       474 ~~~~  477 (501)
                      ..+.
T Consensus       325 G~L~  328 (346)
T COG2706         325 GRLT  328 (346)
T ss_pred             ceEE
Confidence            6554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=6.5e-08  Score=86.25  Aligned_cols=270  Identities=13%  Similarity=0.109  Sum_probs=177.9

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC----ceeeeccCCCCceEEEEeeecCCCCCCEE
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG----SCQRCFKGHNGPVSTLSDKLLGDGSGKIL  225 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~----~~~~~~~~h~~~v~~l~~s~~~~~~~~~l  225 (501)
                      -|.+.|+.+.-..              .+++++++.||.++.|. ..    ..+..+..|-+.|.+++.+    .++.++
T Consensus         7 mhrd~i~hv~~tk--------------a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S----~dg~L~   68 (558)
T KOG0882|consen    7 MHRDVITHVFPTK--------------AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS----YDGWLF   68 (558)
T ss_pred             cccceeeeEeeeh--------------hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc----ccceeE
Confidence            3778888877654              68999999999999997 33    2345567788888888886    788899


Q ss_pred             EEeeC-CCcEEEEeccCCCccccccceeec--cCCCCceeEEEEeecCC--eEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          226 ASGGE-DATVRLWSLSSSGKRGQQALKATL--YGHEKPIKLMSVAGHKS--FLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       226 ~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      .|++. |..++++|+..-..      +..+  .--.+.+.. ..++.+.  .+-++.-.++.+.++|-....+       
T Consensus        69 ~Sv~d~Dhs~KvfDvEn~Dm------inmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------  134 (558)
T KOG0882|consen   69 RSVEDPDHSVKVFDVENFDM------INMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------  134 (558)
T ss_pred             eeccCcccceeEEEeeccch------hhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcC-------
Confidence            99777 99999999987552      2111  112222221 1222111  2333334578888888765421       


Q ss_pred             cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC-CCC
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR-SQD  378 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~-~~~  378 (501)
                                                         +....-..|..+|..+.+.+-+..+++....+ |.-|.... .+.
T Consensus       135 -----------------------------------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf  179 (558)
T KOG0882|consen  135 -----------------------------------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF  179 (558)
T ss_pred             -----------------------------------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence                                               12223345889999999999999999999888 99998873 111


Q ss_pred             C-----CC---CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCC---------------
Q 010784          379 A-----VK---PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP---------------  434 (501)
Q Consensus       379 ~-----~~---~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~---------------  434 (501)
                      +     .+   ..-+..+........++.|+|+ ..+++-+.|..|+++++.+|++++.+.....               
T Consensus       180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V  259 (558)
T KOG0882|consen  180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV  259 (558)
T ss_pred             ccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence            1     00   0111222233567789999999 7777777999999999999987766521110               


Q ss_pred             ------------CCC-CcceeeeEeeccccEEEEeecCCCceEEEeeccCCccceeecCCCCceeeeccc
Q 010784          435 ------------EEA-DISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       435 ------------~~~-~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s~~~d~~~~~w~~~  491 (501)
                                  ..| ...-+.+.|...|++|+.|+.   --|++.++.++....+-| .|-.+|+-.++
T Consensus       260 elgRRmaverelek~~~~~~~~~~fdes~~flly~t~---~gikvin~~tn~v~ri~g-k~e~ir~~~~s  325 (558)
T KOG0882|consen  260 ELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI---LGIKVINLDTNTVVRILG-KDEAIRFTRLS  325 (558)
T ss_pred             ehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc---eeEEEEEeecCeEEEEec-cchhhhhhhHH
Confidence                        011 222355788889999999874   358888888777544444 33355555443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.91  E-value=1.4e-05  Score=70.07  Aligned_cols=270  Identities=13%  Similarity=0.168  Sum_probs=166.4

Q ss_pred             eeeEEEEeccccc--ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC---CceEEec----CCcee--
Q 010784          131 IQNIKIDNFLSES--YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD---HSIRLWW----KGSCQ--  199 (501)
Q Consensus       131 d~~i~vw~~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd----~~~~~--  199 (501)
                      ..-|.+|++.+..  .....+-.+.+..+=|+|+|             +++.|.++..+   |.|..|.    .|...  
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-------------~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l   81 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-------------DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL   81 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECC-------------CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence            5778899887432  22223345677888999998             78888887665   6666664    23322  


Q ss_pred             eeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeeccCCCCc----------eeEEEEee
Q 010784          200 RCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYGHEKP----------IKLMSVAG  268 (501)
Q Consensus       200 ~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------v~~l~~~~  268 (501)
                      ........+-..++++    +++++|+++.. -|.|.++-++....   .........|.+.          +....+.|
T Consensus        82 n~~~~~g~~p~yvsvd----~~g~~vf~AnY~~g~v~v~p~~~dG~---l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP  154 (346)
T COG2706          82 NRQTLPGSPPCYVSVD----EDGRFVFVANYHSGSVSVYPLQADGS---LQPVVQVVKHTGSGPHERQESPHVHSANFTP  154 (346)
T ss_pred             eccccCCCCCeEEEEC----CCCCEEEEEEccCceEEEEEcccCCc---cccceeeeecCCCCCCccccCCccceeeeCC
Confidence            1122222333667774    89999998875 57899999876432   1111122234443          66778888


Q ss_pred             cCCeEEEEEe-CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEE--EEe--CCcEEEEEcCCC-ceEeeec
Q 010784          269 HKSFLLVTIS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLY--IAS--GSSVVTIDLRTM-QKVMTPA  342 (501)
Q Consensus       269 ~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~i~~~d~~~~-~~~~~~~  342 (501)
                       +++++++.. .-..|.+|++..++.......  .......+..+.|+++..+  +.+  .++|.+|..... .....++
T Consensus       155 -~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~--~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ  231 (346)
T COG2706         155 -DGRYLVVPDLGTDRIFLYDLDDGKLTPADPA--EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ  231 (346)
T ss_pred             -CCCEEEEeecCCceEEEEEcccCcccccccc--ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence             676777665 345799999997765432221  1255666777888777654  443  358999988763 2222222


Q ss_pred             c---------CCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEe
Q 010784          343 I---------CKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGG  409 (501)
Q Consensus       343 ~---------~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~g  409 (501)
                      .         .......|.+++||++|.++..+-  |.+|.+......  ...+.....+......+.+++. + +++++
T Consensus       232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~--L~~~~~~~teg~~PR~F~i~~~g~~Liaa~  309 (346)
T COG2706         232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK--LELVGITPTEGQFPRDFNINPSGRFLIAAN  309 (346)
T ss_pred             eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE--EEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence            1         145577899999999999988443  888887654321  1122223333444678889988 4 44554


Q ss_pred             cCCCcEEEEeCC--Cccc
Q 010784          410 RDDLRINIWETD--TGML  425 (501)
Q Consensus       410 s~dg~i~iwd~~--~~~~  425 (501)
                      -.+..|.+|...  +|++
T Consensus       310 q~sd~i~vf~~d~~TG~L  327 (346)
T COG2706         310 QKSDNITVFERDKETGRL  327 (346)
T ss_pred             cCCCcEEEEEEcCCCceE
Confidence            455678888765  4443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=8e-08  Score=90.60  Aligned_cols=232  Identities=9%  Similarity=0.101  Sum_probs=157.5

Q ss_pred             cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C--------C-------ceeeeccCCCCceEEEEeee
Q 010784          154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K--------G-------SCQRCFKGHNGPVSTLSDKL  216 (501)
Q Consensus       154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~--------~-------~~~~~~~~h~~~v~~l~~s~  216 (501)
                      ....|++|+.             +..+++.|+.||.++|-.  +        +       ..-+++.+|.+.|.-+.|. 
T Consensus        15 vkL~c~~WNk-------------e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN-   80 (1189)
T KOG2041|consen   15 VKLHCAEWNK-------------ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN-   80 (1189)
T ss_pred             ceEEEEEEcc-------------cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec-
Confidence            4688999998             789999999999999984  1        1       0124678999999999995 


Q ss_pred             cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec-cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc
Q 010784          217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL-YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR  295 (501)
Q Consensus       217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~  295 (501)
                         ...+.|-+...+|.|.+|-+-.+.-     +...+ ....+-|.+++|.. ++..+.....||.|.+=.++...   
T Consensus        81 ---e~~QKLTtSDt~GlIiVWmlykgsW-----~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR---  148 (1189)
T KOG2041|consen   81 ---ENNQKLTTSDTSGLIIVWMLYKGSW-----CEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR---  148 (1189)
T ss_pred             ---cccccccccCCCceEEEEeeecccH-----HHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce---
Confidence               7788999999999999999988753     22222 23456688999985 78888889999998876665432   


Q ss_pred             ceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecC
Q 010784          296 SSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIR  374 (501)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~  374 (501)
                                                       +|.-       .++  ......+.|++|.+.++.+-.++ +.+||..
T Consensus       149 ---------------------------------IwgK-------eLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  149 ---------------------------------IWGK-------ELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQ  186 (1189)
T ss_pred             ---------------------------------ecch-------hcc--hheccceeecccHHHHHhhhcCCcEEEeccc
Confidence                                             1110       011  12234688999988888777777 9999976


Q ss_pred             CCCCC-CCCCCcc----cccCcccCeEEEEe--------cCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784          375 RSQDA-VKPQPMA----ELDGHVGSVTQLHM--------DPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIS  440 (501)
Q Consensus       375 ~~~~~-~~~~~~~----~~~~h~~~v~~l~~--------~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  440 (501)
                      ..-.. .+..+..    .+......|-.+.|        -|+ ..++.+-.+|.+.|..-.+......+.      ....
T Consensus       187 gnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d------tgm~  260 (1189)
T KOG2041|consen  187 GNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD------TGMK  260 (1189)
T ss_pred             ccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe------cccE
Confidence            43110 0000000    01111112444444        346 677777789999887766544443442      1356


Q ss_pred             eeeeEeeccccEEEEeecC
Q 010784          441 TGCSAMAVSGCRIVTASYG  459 (501)
Q Consensus       441 v~~~~~s~~g~~l~s~~~d  459 (501)
                      +....|+++|..|+.+|.+
T Consensus       261 ~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  261 IVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             eecceecCCCcEEEEccCc
Confidence            8889999999999999876

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.87  E-value=1.9e-07  Score=88.28  Aligned_cols=295  Identities=12%  Similarity=0.075  Sum_probs=168.2

Q ss_pred             cCcEEEEeeCCCceEEec-CCceeeecc--CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784          177 TENVLVTSSCDHSIRLWW-KGSCQRCFK--GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd-~~~~~~~~~--~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      .+.+++.|+.-|.+++|+ .+.....++  +..+.+.....+    ++..++|.|+..|.|.++.++.............
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs----~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~  119 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVS----SVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC  119 (726)
T ss_pred             CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEec----chhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence            679999999999999999 444444443  234444445554    6778899999999999999887443222211222


Q ss_pred             ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784          254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR  333 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  333 (501)
                      -+.|...|++++|++ ++..+++|...|.|.+-.+.+. .............++.++.++.....+++++--.-.+++++
T Consensus       120 d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc~tE  197 (726)
T KOG3621|consen  120 DKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILCQTE  197 (726)
T ss_pred             cccCCceEEEEEecc-cccEEeecCCCceEEEEEechh-hhhccccceeeccCcceEEeecccceehHhhhhhhheeecc
Confidence            234788999999997 8889999999999999888773 11111222223677788888888888888777666666665


Q ss_pred             CCce--EeeeccCCCcEEEEEEcCC----CcEEEEEcCCcEEEEecCCCCCC-----------CCCCCcccccC------
Q 010784          334 TMQK--VMTPAICKPILHSFSIMPS----KSLICTGGIGKAMTWDIRRSQDA-----------VKPQPMAELDG------  390 (501)
Q Consensus       334 ~~~~--~~~~~~~~~~v~~v~~~~~----~~~l~~~~~d~i~iwd~~~~~~~-----------~~~~~~~~~~~------  390 (501)
                      ....  +-+-....-.-...+|-|.    ..-.+.++.=+.|+|...-...+           ..+.+...+..      
T Consensus       198 ~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~  277 (726)
T KOG3621|consen  198 AETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQ  277 (726)
T ss_pred             hhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccc
Confidence            4432  1111110101233444443    33333444444677755321111           00111111111      


Q ss_pred             --------cccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc
Q 010784          391 --------HVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG  462 (501)
Q Consensus       391 --------h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g  462 (501)
                              |-+-......+.+.+++-+ .-| |+|+|..+.+.+.-...      ...|..  .+..|+-|++-.  .|+
T Consensus       278 ~~~~~~~q~ls~~k~~~l~~~~vLa~t-e~G-iyv~d~~~~~v~l~se~------~~DI~d--Vs~~~neiFvL~--~d~  345 (726)
T KOG3621|consen  278 RSLPSGTQHLSLSKSSTLHSDRVLAWT-EVG-IYVFDSNNSQVYLWSEG------GHDILD--VSHCGNEIFVLN--LDR  345 (726)
T ss_pred             cCCCCCccccccceeEEeecceEEEee-cce-EEEEEeccceEEEeecC------CCceeE--EeecCceEEEEe--cCC
Confidence                    1112222233333555553 444 88888877665544321      223333  344555555555  457


Q ss_pred             eEEEeeccCCccceeecCCCCceeeec
Q 010784          463 LLQFRDFSNATCPVLKHEVQNDSKFWG  489 (501)
Q Consensus       463 ~i~~w~~~~~~~~~~s~~~d~~~~~w~  489 (501)
                      .+++..+....+.+.+-..+|....|+
T Consensus       346 ~l~~~sv~s~qr~l~~l~~~G~~m~~~  372 (726)
T KOG3621|consen  346 GLKVESVASRQRKLESLCRCGKEMFVL  372 (726)
T ss_pred             ceeEEEeehhHHHHHHHHhhchhhhhh
Confidence            777777777666655555555444443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=9.9e-06  Score=74.68  Aligned_cols=269  Identities=14%  Similarity=0.129  Sum_probs=172.4

Q ss_pred             eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC---
Q 010784          156 ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE---  230 (501)
Q Consensus       156 V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~---  230 (501)
                      -+-+.|||             -|.+|+|--.-| |.+|-  .-..++.|. |. .|.-+.||    |..+||+|=+.   
T Consensus       213 etyv~wSP-------------~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfS----P~EkYLVT~s~~p~  272 (698)
T KOG2314|consen  213 ETYVRWSP-------------KGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFS----PNEKYLVTYSPEPI  272 (698)
T ss_pred             eeeEEecC-------------CceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecC----CccceEEEecCCcc
Confidence            45678998             789999988766 88996  333444443 44 57788997    88899998652   


Q ss_pred             --------CCcEEEEeccCCCccccccceeeccC---CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784          231 --------DATVRLWSLSSSGKRGQQALKATLYG---HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       231 --------dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                              ...++|||+.+|..      ...+..   ....-.-+.|+. ++++++--.. ..|.||+..+..++...  
T Consensus       273 ~~~~~d~e~~~l~IWDI~tG~l------krsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~K--  342 (698)
T KOG2314|consen  273 IVEEDDNEGQQLIIWDIATGLL------KRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKK--  342 (698)
T ss_pred             ccCcccCCCceEEEEEccccch------hcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeeccc--
Confidence                    25789999999874      333332   222223457885 7777776655 56899987664332110  


Q ss_pred             ccceecCCCceeeecCCCeEEEEeC--------CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC------
Q 010784          300 VGMTSVPGVPVDMKCHESMLYIASG--------SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI------  365 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~------  365 (501)
                        . -....+..+.++|...++|-=        ..+.+..+.+++.+++...+.-.=..+.|-.+|.+|+.--+      
T Consensus       343 --s-lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~  419 (698)
T KOG2314|consen  343 --S-LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK  419 (698)
T ss_pred             --c-cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence              0 112234456666766666521        26778888888877766655443345667777888875321      


Q ss_pred             -----CcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEec--CCCcEEEEeCCC----cccccccccC
Q 010784          366 -----GKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGR--DDLRINIWETDT----GMLANSLLCN  432 (501)
Q Consensus       366 -----d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs--~dg~i~iwd~~~----~~~~~~~~~~  432 (501)
                           .++.|+.++.....     +..+. -...|...+|.|.  ++.+..+  ...++.+|.+++    .+++..+.  
T Consensus       420 ~~g~f~n~eIfrireKdIp-----ve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--  491 (698)
T KOG2314|consen  420 VKGQFSNLEIFRIREKDIP-----VEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--  491 (698)
T ss_pred             ccceEeeEEEEEeeccCCC-----ceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--
Confidence                 12667777765432     33333 3678999999998  4444332  345789998873    23344442  


Q ss_pred             CCCCCCcceeeeEeeccccEEEEeecC-CCceEEEeecc
Q 010784          433 YPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFS  470 (501)
Q Consensus       433 ~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~  470 (501)
                           ....+.+.|+|.|++++.+..- ..|.+.++|.+
T Consensus       492 -----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  492 -----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             -----ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence                 2456789999999999886531 36889999866

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=1.8e-08  Score=86.73  Aligned_cols=170  Identities=16%  Similarity=0.227  Sum_probs=120.0

Q ss_pred             EEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceec
Q 010784          226 ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV  305 (501)
Q Consensus       226 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~  305 (501)
                      ++.+.+-.|-+-|+.++-       .+.+. ..+.|.++.|.. .++++..|..+|.|..+|++.+..-           
T Consensus       228 fs~G~sqqv~L~nvetg~-------~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG-----------  287 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH-------QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQG-----------  287 (425)
T ss_pred             ecccccceeEEEEeeccc-------ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccC-----------
Confidence            555667788999999875       34444 667788889985 6789999999999999999976210           


Q ss_pred             CCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCCCCCC
Q 010784          306 PGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDAVKPQ  383 (501)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~  383 (501)
                                                  ++.+...+ -|...|+++..-. ++++|.+.+.++ |++||++..++.   .
T Consensus       288 ----------------------------~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~---~  335 (425)
T KOG2695|consen  288 ----------------------------NGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK---K  335 (425)
T ss_pred             ----------------------------CCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc---c
Confidence                                        01111111 2788888887766 566776666556 999999987662   3


Q ss_pred             CcccccCcccCeEEE--EecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784          384 PMAELDGHVGSVTQL--HMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       384 ~~~~~~~h~~~v~~l--~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                      .+.+..||.+.-.-+  .+++. .++++++.|...+||.+++|+++.+++...+ .....+.+++|..
T Consensus       336 ~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s-~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  336 SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS-ASEVDIPSVAFDS  402 (425)
T ss_pred             ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc-cccccccceehhc
Confidence            457888886544333  34555 7777788999999999999999999965442 2233455666643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.82  E-value=2.4e-05  Score=65.40  Aligned_cols=146  Identities=13%  Similarity=0.073  Sum_probs=91.4

Q ss_pred             eCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CC
Q 010784          119 DNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KG  196 (501)
Q Consensus       119 ~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~  196 (501)
                      .....+++.|+..+.+.--|..+|+-.-..+-  ...|.+-+.-              -|++++.|...|.+++-+  +|
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v--------------vgdfVV~GCy~g~lYfl~~~tG   83 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV--------------VGDFVVLGCYSGGLYFLCVKTG   83 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE--------------ECCEEEEEEccCcEEEEEecch
Confidence            34467888899999999999888733333322  2344443333              268899999999999987  77


Q ss_pred             ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEE
Q 010784          197 SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT  276 (501)
Q Consensus       197 ~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s  276 (501)
                      .....+..- +.|.+-+-.   ++++..+..|+.|++.+..|..+..      ++...+...+...+-++.+.++ .|..
T Consensus        84 s~~w~f~~~-~~vk~~a~~---d~~~glIycgshd~~~yalD~~~~~------cVykskcgG~~f~sP~i~~g~~-sly~  152 (354)
T KOG4649|consen   84 SQIWNFVIL-ETVKVRAQC---DFDGGLIYCGSHDGNFYALDPKTYG------CVYKSKCGGGTFVSPVIAPGDG-SLYA  152 (354)
T ss_pred             hheeeeeeh-hhhccceEE---cCCCceEEEecCCCcEEEecccccc------eEEecccCCceeccceecCCCc-eEEE
Confidence            666665432 223222211   5789999999999999999999876      3555443333222334444233 4555


Q ss_pred             EeCCCeEEEEECCCC
Q 010784          277 ISKDSKVRVWDTSTS  291 (501)
Q Consensus       277 ~s~dg~v~vwd~~~~  291 (501)
                      +...|.|.--.....
T Consensus       153 a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  153 AITAGAVLAVTKNPY  167 (354)
T ss_pred             EeccceEEEEccCCC
Confidence            555666655554443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=2.2e-08  Score=86.18  Aligned_cols=150  Identities=13%  Similarity=0.166  Sum_probs=107.3

Q ss_pred             EEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784          182 VTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP  260 (501)
Q Consensus       182 ~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  260 (501)
                      ++.+.+-.|-+-| .....+.|. ..+.|.++.|.    ..+++++.|..+|.|...|++...+... -+.+.+ -|...
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~----~s~nLv~~GcRngeI~~iDLR~rnqG~~-~~a~rl-yh~Ss  300 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFA----GSDNLVFNGCRNGEIFVIDLRCRNQGNG-WCAQRL-YHDSS  300 (425)
T ss_pred             ecccccceeEEEEeecccccccc-cchhHHHHHhc----ccCCeeEecccCCcEEEEEeeecccCCC-cceEEE-EcCcc
Confidence            4445566677777 444455555 67789999996    6789999999999999999998632111 133334 38899


Q ss_pred             eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEee
Q 010784          261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMT  340 (501)
Q Consensus       261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  340 (501)
                      |+++.....++..|++.+.+|+|++||++--+.                                         ++.+..
T Consensus       301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-----------------------------------------~~~V~q  339 (425)
T KOG2695|consen  301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-----------------------------------------KKSVMQ  339 (425)
T ss_pred             hhhhhhhccccceEeeccCcCceeEeeehhhhc-----------------------------------------ccceee
Confidence            999988765778899999999999999986543                                         122345


Q ss_pred             eccCCCcEE--EEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          341 PAICKPILH--SFSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       341 ~~~~~~~v~--~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                      +.+|...-.  -+...+....++++++|. .|||.++.+..+
T Consensus       340 YeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  340 YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             eecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence            556633222  233456677888899999 999999987765

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=3.1e-07  Score=88.06  Aligned_cols=190  Identities=15%  Similarity=0.122  Sum_probs=131.5

Q ss_pred             CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784          153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED  231 (501)
Q Consensus       153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d  231 (501)
                      .+.++|++++               +.+|+-|..+|.|++.+ .+.. .+...|...          +.+|.+++||+.|
T Consensus        39 ~D~is~~av~---------------~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~----------~~~Gey~asCS~D   92 (846)
T KOG2066|consen   39 NDAISCCAVH---------------DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS----------ILEGEYVASCSDD   92 (846)
T ss_pred             hhHHHHHHhh---------------cceeeeccccceEEEEecCCcc-ccccccccc----------ccCCceEEEecCC
Confidence            3567788775               48999999999999998 5554 444445443          3689999999999


Q ss_pred             CcEEEEeccCCCccccccceeeccCCCCceeEEEEeec----CCeEEEEEeCCCeEEEEECCCCccccceecccceecCC
Q 010784          232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH----KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG  307 (501)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  307 (501)
                      |+|.|-.+.+.+.      ...+ ....++.+++++|+    ..+++++|+.-| +.++.-+=....             
T Consensus        93 Gkv~I~sl~~~~~------~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-------------  151 (846)
T KOG2066|consen   93 GKVVIGSLFTDDE------ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-------------  151 (846)
T ss_pred             CcEEEeeccCCcc------ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-------------
Confidence            9999999988764      2222 34568899999985    356899999888 776643211100             


Q ss_pred             CceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCccc
Q 010784          308 VPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAE  387 (501)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~  387 (501)
                                                  .. ..+....++|.++.|  .|+++|-+++.||++||+.+.+.+...++-..
T Consensus       152 ----------------------------~~-v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~  200 (846)
T KOG2066|consen  152 ----------------------------DS-VVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQ  200 (846)
T ss_pred             ----------------------------cc-eeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCCCCC
Confidence                                        00 022334789999999  68899999999999999998776522111111


Q ss_pred             ccCcccCeEEEEecCCeEEEEecCCCcEEEEeCC
Q 010784          388 LDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETD  421 (501)
Q Consensus       388 ~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~  421 (501)
                      ......-...+.|.++..++.| ...+|+|..++
T Consensus       201 ~~R~e~fpphl~W~~~~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  201 SVRPELFPPHLHWQDEDRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             CCCcccCCCceEecCCCeEEEe-cCCeEEEEEEe
Confidence            1111223456889888455555 66689999887

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.80  E-value=9.7e-09  Score=98.89  Aligned_cols=202  Identities=15%  Similarity=0.159  Sum_probs=140.0

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~  220 (501)
                      .+..+++..|...-+|++|+-             +.++|+.|+..|.|++++  +|.......+|.++|+.+.=+    .
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~-------------~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs----~ 1153 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-------------GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS----V 1153 (1516)
T ss_pred             cccchhhhccccceeeEEeec-------------CCceEEeeeccceEEEEEccCcccccccccccccccccccc----C
Confidence            456677889999999999998             789999999999999998  888888899999999999854    6


Q ss_pred             CCCEEEEeeCCC--cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784          221 SGKILASGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC  298 (501)
Q Consensus       221 ~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  298 (501)
                      +|..+++.+.-.  ...+|++..-..     ..+.+.+    -.++.|+.. ...-+.|.......+||+.++.......
T Consensus      1154 dgs~~Ltsss~S~PlsaLW~~~s~~~-----~~Hsf~e----d~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASSTGG-----PRHSFDE----DKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred             CcceeeeeccccCchHHHhccccccC-----ccccccc----cceeehhhh-HHHHHhcccccceEEEecccCcHHHHhc
Confidence            777766655433  468999876432     3444432    346778753 3333445555678999999987654321


Q ss_pred             cccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCC
Q 010784          299 CVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQD  378 (501)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~  378 (501)
                      . ........-....|+|...++..++  .+||.+..+.++.|......+ .-.|+|.|.-++.-++    |||+++.+.
T Consensus      1224 t-~~~~~~y~~n~a~FsP~D~LIlndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1224 T-DTVTSSYSNNLAHFSPCDTLILNDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE----IWDMRTFKL 1295 (1516)
T ss_pred             C-cchhhhhhccccccCCCcceEeeCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech----hhhhHHHHH
Confidence            1 1111111223445555554444443  579999998888877655333 3358999998888775    899999654


Q ss_pred             C
Q 010784          379 A  379 (501)
Q Consensus       379 ~  379 (501)
                      +
T Consensus      1296 L 1296 (1516)
T KOG1832|consen 1296 L 1296 (1516)
T ss_pred             H
Confidence            3

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=1.7e-07  Score=83.74  Aligned_cols=269  Identities=15%  Similarity=0.054  Sum_probs=174.7

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEeccc--ccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS--ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~--~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      |..-|+.+... .-.++.+++.||.++.|....  +.+.+..+..|-..|.+++.+-             ++.++.|.+.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-------------dg~L~~Sv~d   73 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-------------DGWLFRSVED   73 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-------------cceeEeeccC
Confidence            33445555444 357889999999999998653  4567777888999999999887             8899999777


Q ss_pred             -CCceEEec--CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          187 -DHSIRLWW--KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       187 -dg~i~vwd--~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                       |..++++|  .-..+  ..+..-.+.+.++. + ..++-..+-++...+|.+.++|-.....    +....-.-|..+|
T Consensus        74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~-s-kGd~~s~IAVs~~~sg~i~VvD~~~d~~----q~~~fkklH~sPV  147 (558)
T KOG0882|consen   74 PDHSVKVFDVENFDMINMIKLVDLPGFAEWVT-S-KGDKISLIAVSLFKSGKIFVVDGFGDFC----QDGYFKKLHFSPV  147 (558)
T ss_pred             cccceeEEEeeccchhhhcccccCCCceEEec-C-CCCeeeeEEeecccCCCcEEECCcCCcC----ccceecccccCce
Confidence             99999998  22221  12222223333222 1 0001113334445688999999876543    2344556699999


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCC-CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEee
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMT  340 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  340 (501)
                      ..+.+.+ .+..+++....|.|.-|.... .+..+.                              -..|.+....-+..
T Consensus       148 ~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~------------------------------~l~~~~K~eTdLy~  196 (558)
T KOG0882|consen  148 KKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRT------------------------------NLNFELKHETDLYG  196 (558)
T ss_pred             EEEEeec-cccceeeccccceeEeecCCCcccCccc------------------------------cccccccccchhhc
Confidence            9999997 677888999999999998873 111100                              00122222233333


Q ss_pred             eccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCc--------------------------ccccCccc
Q 010784          341 PAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPM--------------------------AELDGHVG  393 (501)
Q Consensus       341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~--------------------------~~~~~h~~  393 (501)
                      +........++.|+|++..+.+-+.|. |++++.++++........                          ..+..|..
T Consensus       197 f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~  276 (558)
T KOG0882|consen  197 FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGS  276 (558)
T ss_pred             ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcC
Confidence            444567788999999999999999999 999999998754111000                          01111222


Q ss_pred             -CeEEEEecCC-eEEEEecCCCcEEEEeCCCccccccc
Q 010784          394 -SVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSL  429 (501)
Q Consensus       394 -~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~  429 (501)
                       .-+.+.|+.. .++.-|+.=| |++.++.++++.+.+
T Consensus       277 ~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  277 TVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             cccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence             2345667777 7777765554 899999988876665

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.77  E-value=9.5e-06  Score=71.81  Aligned_cols=217  Identities=12%  Similarity=0.051  Sum_probs=127.8

Q ss_pred             cCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          177 TENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      ++.++++--..+.|..|+ .+.....+....  ...+++.   .++ ..++.+..+ .+.++|..+++.    ..+....
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~---~~~-g~l~v~~~~-~~~~~d~~~g~~----~~~~~~~   79 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFD---RPD-GRLYVADSG-GIAVVDPDTGKV----TVLADLP   79 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEE---CTT-SEEEEEETT-CEEEEETTTTEE----EEEEEEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEE---ccC-CEEEEEEcC-ceEEEecCCCcE----EEEeecc
Confidence            577778877889999998 444444333222  5566663   134 455555554 455668887642    1222221


Q ss_pred             --C-CCCceeEEEEeecCCeEEEEEeCC--------CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784          256 --G-HEKPIKLMSVAGHKSFLLVTISKD--------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       256 --~-~~~~v~~l~~~~~~~~~l~s~s~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (501)
                        . .....+.+++.+ ++++.++....        |.|..++.. ++                                
T Consensus        80 ~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--------------------------------  125 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--------------------------------  125 (246)
T ss_dssp             TTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SE--------------------------------
T ss_pred             CCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-Ce--------------------------------
Confidence              1 344567888887 66666665433        334444443 21                                


Q ss_pred             CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE-cCCc-EEEEecCCCCC-CCCCCCcccccCcccCeEEEEec
Q 010784          325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG-GIGK-AMTWDIRRSQD-AVKPQPMAELDGHVGSVTQLHMD  401 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~d~-i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~  401 (501)
                                  . ..+...-...+.++|+|+++.|+.. +..+ |..+++..... +...+.+..+....+..-.++++
T Consensus       126 ------------~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD  192 (246)
T PF08450_consen  126 ------------V-TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD  192 (246)
T ss_dssp             ------------E-EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred             ------------E-EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence                        1 1111123446899999999876644 4555 99999875432 10011122333323347789999


Q ss_pred             CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEee-ccccEEEEee
Q 010784          402 PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMA-VSGCRIVTAS  457 (501)
Q Consensus       402 ~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~s~~  457 (501)
                      .+ ++.++....+.|.+++.+ |+.+..+..     ....+++++|. ++.+.|+..+
T Consensus       193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~-----p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  193 SDGNLWVADWGGGRIVVFDPD-GKLLREIEL-----PVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             TTS-EEEEEETTTEEEEEETT-SCEEEEEE------SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEECCC-ccEEEEEcC-----CCCCEEEEEEECCCCCEEEEEe
Confidence            98 888887788999999987 888888843     23478999994 6766665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.77  E-value=1.1e-05  Score=76.78  Aligned_cols=257  Identities=11%  Similarity=0.023  Sum_probs=143.1

Q ss_pred             cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEE-EEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784          177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVST-LSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~-l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      .+..++.++.+|.+..+|  +|+.+-...... .+.+ ...      .+..++.+..+|.+..+|..+++.      +-.
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v------~~~~v~v~~~~g~l~ald~~tG~~------~W~  185 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV------SDGLVLVHTSNGMLQALNESDGAV------KWT  185 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE------ECCEEEEECCCCEEEEEEccCCCE------eee
Confidence            356677788899999998  677766554332 2222 122      234667778889999999999874      222


Q ss_pred             ccCCCCc-----eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee------cCCCceeeecCCCeEEEE
Q 010784          254 LYGHEKP-----IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS------VPGVPVDMKCHESMLYIA  322 (501)
Q Consensus       254 ~~~~~~~-----v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  322 (501)
                      .......     ...-...  ++ .++.++.+|.+..+|..+++............      ...........++.+++.
T Consensus       186 ~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~  262 (394)
T PRK11138        186 VNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL  262 (394)
T ss_pred             ecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE
Confidence            2211100     0011111  23 46667788999999999887654322111000      000001111224445554


Q ss_pred             e-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEE
Q 010784          323 S-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLH  399 (501)
Q Consensus       323 ~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~  399 (501)
                      + ++.+..+|..+++.+......  ....+..  .+..++.++.++ +..+|..+++.+      -....- .....+..
T Consensus       263 ~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~------W~~~~~~~~~~~sp~  332 (394)
T PRK11138        263 AYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVEL------WSQSDLLHRLLTAPV  332 (394)
T ss_pred             EcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEE------EcccccCCCcccCCE
Confidence            4 468999999999887655421  1112222  344555566556 999999887644      111100 11122222


Q ss_pred             ecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceee-eEeeccccEEEEeecCCCceEEEeec
Q 010784          400 MDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGC-SAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       400 ~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      +..+.+++ ++.||.|.+.|..+|+.+......     ...+.. ..+  .+..|+.++  .+|.|..++.
T Consensus       333 v~~g~l~v-~~~~G~l~~ld~~tG~~~~~~~~~-----~~~~~s~P~~--~~~~l~v~t--~~G~l~~~~~  393 (394)
T PRK11138        333 LYNGYLVV-GDSEGYLHWINREDGRFVAQQKVD-----SSGFLSEPVV--ADDKLLIQA--RDGTVYAITR  393 (394)
T ss_pred             EECCEEEE-EeCCCEEEEEECCCCCEEEEEEcC-----CCcceeCCEE--ECCEEEEEe--CCceEEEEeC
Confidence            33335544 468999999999999988776421     111221 122  344677777  6698887653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.76  E-value=9.1e-05  Score=67.28  Aligned_cols=193  Identities=11%  Similarity=0.050  Sum_probs=126.8

Q ss_pred             CCeEEEEEeCCCeEEEEECCCCccccceecccce---ecCC--Cc----eee-ecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT---SVPG--VP----VDM-KCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~~~~--~~----~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      +++.++. +..|.|.+||..+.+......-....   ....  .+    ... ..+++...+++.++..+.+...+-.++
T Consensus       277 DGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iq  355 (668)
T COG4946         277 DGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQ  355 (668)
T ss_pred             CCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEE
Confidence            5555554 34578999999876543211110000   0000  00    001 123455666677777777766655444


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN  416 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~  416 (501)
                      .  ++.+.|.-..+.-+++-++.|..|+  +-|+|..+++.       ..+...-+.|.++..+++ +.++.+.....+-
T Consensus       356 v--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-------kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~  426 (668)
T COG4946         356 V--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-------KRIEKDLGNIEAVKVSPDGKKVVVANDRFELW  426 (668)
T ss_pred             c--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-------EEeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence            3  3566688778877877888888666  99999998763       455566788999999999 8777776778888


Q ss_pred             EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC--CCceEEEeeccCCcccee
Q 010784          417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG--EPGLLQFRDFSNATCPVL  477 (501)
Q Consensus       417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d--~~g~i~~w~~~~~~~~~~  477 (501)
                      +.|+.+|.....=     ....+-|+...|+|++++||-+-.+  -...|+++|+..+.-.-+
T Consensus       427 vididngnv~~id-----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         427 VIDIDNGNVRLID-----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             EEEecCCCeeEec-----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            8899998754333     2235679999999999999988632  123688888776554433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.73  E-value=1.5e-08  Score=97.68  Aligned_cols=196  Identities=16%  Similarity=0.222  Sum_probs=135.2

Q ss_pred             CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784          196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV  275 (501)
Q Consensus       196 ~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  275 (501)
                      .+..++|+.|+...+|++|+    .+.+.|+.|+..|.|+++++.+|..      ......|..+|+.+.-+- ++..++
T Consensus      1091 Fr~w~~frd~~~~fTc~afs----~~~~hL~vG~~~Geik~~nv~sG~~------e~s~ncH~SavT~vePs~-dgs~~L 1159 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFS----GGTNHLAVGSHAGEIKIFNVSSGSM------EESVNCHQSAVTLVEPSV-DGSTQL 1159 (1516)
T ss_pred             cccchhhhccccceeeEEee----cCCceEEeeeccceEEEEEccCccc------cccccccccccccccccC-Ccceee
Confidence            34556788899999999998    7889999999999999999999874      778889999999988775 455544


Q ss_pred             EE-eCCC-eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEE
Q 010784          276 TI-SKDS-KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSI  353 (501)
Q Consensus       276 s~-s~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~  353 (501)
                      +. +... -..+|++..-                                           +...+++.    .-.++.|
T Consensus      1160 tsss~S~PlsaLW~~~s~-------------------------------------------~~~~Hsf~----ed~~vkF 1192 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASST-------------------------------------------GGPRHSFD----EDKAVKF 1192 (1516)
T ss_pred             eeccccCchHHHhccccc-------------------------------------------cCcccccc----ccceeeh
Confidence            44 4333 3567887542                                           11112222    2246677


Q ss_pred             cCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc-cc---CcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccccc
Q 010784          354 MPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE-LD---GHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLAN  427 (501)
Q Consensus       354 ~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-~~---~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~  427 (501)
                      +..-+.-+.|+... ..+||+.+...+      .+ +.   +....-+...|+|+ .++.   .||  .+||++..+.++
T Consensus      1193 sn~~q~r~~gt~~d~a~~YDvqT~~~l------~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh 1261 (1516)
T KOG1832|consen 1193 SNSLQFRALGTEADDALLYDVQTCSPL------QTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIH 1261 (1516)
T ss_pred             hhhHHHHHhcccccceEEEecccCcHH------HHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHh
Confidence            76655555555445 999999997654      33 21   12223367889999 6665   466  589999998888


Q ss_pred             ccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          428 SLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       428 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      .|.     ..+. -..-.|+|.|.-++.-+       .+||+.+-.
T Consensus      1262 ~FD-----~ft~-~~~G~FHP~g~eVIINS-------EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1262 RFD-----QFTD-YGGGGFHPSGNEVIINS-------EIWDMRTFK 1294 (1516)
T ss_pred             hhh-----hhee-cccccccCCCceEEeec-------hhhhhHHHH
Confidence            883     2221 22336999999988876       278866543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.73  E-value=1.4e-05  Score=67.87  Aligned_cols=205  Identities=17%  Similarity=0.152  Sum_probs=119.6

Q ss_pred             cCcEEEEeeCCCceEEec----CCceeee---ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccc
Q 010784          177 TENVLVTSSCDHSIRLWW----KGSCQRC---FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQA  249 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd----~~~~~~~---~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  249 (501)
                      +|+.||.-- |..|.|=.    -...+..   -+.....=+-++||    +++.+||.+...|+|+++|+....      
T Consensus         8 ~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WS----pD~tlLa~a~S~G~i~vfdl~g~~------   76 (282)
T PF15492_consen    8 DGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWS----PDCTLLAYAESTGTIRVFDLMGSE------   76 (282)
T ss_pred             CCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEEC----CCCcEEEEEcCCCeEEEEecccce------
Confidence            677776654 66676653    2222222   23333445679997    899999999999999999998643      


Q ss_pred             ceeeccC-------CCCceeEEEEeecC-----CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCC
Q 010784          250 LKATLYG-------HEKPIKLMSVAGHK-----SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHES  317 (501)
Q Consensus       250 ~~~~~~~-------~~~~v~~l~~~~~~-----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (501)
                       +..+..       -...|..+.|....     ...|+.-..+|.++-|-+..+...                       
T Consensus        77 -lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q-----------------------  132 (282)
T PF15492_consen   77 -LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ-----------------------  132 (282)
T ss_pred             -eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC-----------------------
Confidence             222221       12345555554321     224555555666655544222100                       


Q ss_pred             eEEEEeCCcEEEEEcCCCceEe--eecc-CCCcEEEEEEcCCCcEEEEEc----CC--------cEEEEecCCCCCCCC-
Q 010784          318 MLYIASGSSVVTIDLRTMQKVM--TPAI-CKPILHSFSIMPSKSLICTGG----IG--------KAMTWDIRRSQDAVK-  381 (501)
Q Consensus       318 ~~~~~~~~~i~~~d~~~~~~~~--~~~~-~~~~v~~v~~~~~~~~l~~~~----~d--------~i~iwd~~~~~~~~~-  381 (501)
                                      ..+..+  .+.. +...|.++.++|..++|++|+    ++        ++..|.+-++..-.+ 
T Consensus       133 ----------------~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~  196 (282)
T PF15492_consen  133 ----------------GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ  196 (282)
T ss_pred             ----------------cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence                            011111  1222 356677777777766666665    11        356666544322100 


Q ss_pred             -------------C---CCccc------ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccC
Q 010784          382 -------------P---QPMAE------LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCN  432 (501)
Q Consensus       382 -------------~---~~~~~------~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~  432 (501)
                                   .   ..+..      .......|..|..+|+ .+||+...+|.|.+|++.+-++.+.+...
T Consensus       197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence                         0   00000      0123567999999999 99999999999999999998888877543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.72  E-value=4.5e-06  Score=73.61  Aligned_cols=216  Identities=12%  Similarity=0.108  Sum_probs=123.7

Q ss_pred             CCceEEec--CCceeeeccCC--CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784          187 DHSIRLWW--KGSCQRCFKGH--NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       187 dg~i~vwd--~~~~~~~~~~h--~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      +|+|..||  +++.+-...--  .....+..+     .++..+++++.++.|..||..+++.      +..... ...+.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~l~~~d~~tG~~------~W~~~~-~~~~~   69 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-----PDGGRVYVASGDGNLYALDAKTGKV------LWRFDL-PGPIS   69 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-----EETTEEEEEETTSEEEEEETTTSEE------EEEEEC-SSCGG
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-----EeCCEEEEEcCCCEEEEEECCCCCE------EEEeec-ccccc
Confidence            57788887  66666554321  122221122     3566788888999999999998874      333332 22211


Q ss_pred             EEEEeecCCeEEEEEeCCCeEEEEECCCCccccce-ecccceecCCCceeeecCCCeEEEEe-CCcEEEEEcCCCceEee
Q 010784          263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS-CCVGMTSVPGVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVMT  340 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~  340 (501)
                      .....  .+..++.++.++.+..+|..+++..... ...................+.++++. .+.+..+|+++++.+..
T Consensus        70 ~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~  147 (238)
T PF13360_consen   70 GAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK  147 (238)
T ss_dssp             SGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred             ceeee--cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence            11122  2335666678889999999999876542 21110000112223334466677776 67999999999999877


Q ss_pred             eccCCCc----------EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEE-EEecCCeEEEE
Q 010784          341 PAICKPI----------LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQ-LHMDPYKIVTG  408 (501)
Q Consensus       341 ~~~~~~~----------v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~l~~  408 (501)
                      .......          +..-....++..+++..++. +.+ |+.+++..      ....  ...+.. ...+.+.+++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~------w~~~--~~~~~~~~~~~~~~l~~~  218 (238)
T PF13360_consen  148 YPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKL------WSKP--ISGIYSLPSVDGGTLYVT  218 (238)
T ss_dssp             EESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEE------EEEC--SS-ECECEECCCTEEEEE
T ss_pred             eecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEE------EEec--CCCccCCceeeCCEEEEE
Confidence            7654322          12222233454444444555 555 99998632      2111  222333 22222355555


Q ss_pred             ecCCCcEEEEeCCCcccc
Q 010784          409 GRDDLRINIWETDTGMLA  426 (501)
Q Consensus       409 gs~dg~i~iwd~~~~~~~  426 (501)
                      . .++.|..||+.+|+.+
T Consensus       219 ~-~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  219 S-SDGRLYALDLKTGKVV  235 (238)
T ss_dssp             E-TTTEEEEEETTTTEEE
T ss_pred             e-CCCEEEEEECCCCCEE
Confidence            4 8999999999999865

...

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.72  E-value=2.9e-08  Score=59.14  Aligned_cols=38  Identities=29%  Similarity=0.462  Sum_probs=35.7

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW  194 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  194 (501)
                      +++.++.+|.+.|++|+|+|             ++++|++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~-------------~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSP-------------DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEET-------------TSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEec-------------ccccceeeCCCCEEEEEC
Confidence            56788999999999999999             899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=2.1e-05  Score=74.79  Aligned_cols=214  Identities=14%  Similarity=0.108  Sum_probs=119.7

Q ss_pred             ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCE-EEEeeC---CCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKI-LASGGE---DATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~-l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      .|.+=| .+...+.+.... ......|+    |+|+. ++..+.   +..|.++|+.+++.       ..+....+....
T Consensus       170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wS----pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-------~~lt~~~g~~~~  237 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKGG-LNIFPKWA----NKEQTAFYYTSYGERKPTLYKYNLYTGKK-------EKIASSQGMLVV  237 (419)
T ss_pred             eEEEECCCCCceeEEccCC-CeEeEEEC----CCCCcEEEEEEccCCCCEEEEEECCCCcE-------EEEecCCCcEEe
Confidence            444445 444444444333 67778887    78874 554333   35688889987753       223234455556


Q ss_pred             EEEeecCCeEEEEEeCC--CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          264 MSVAGHKSFLLVTISKD--SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      ..|+|++..++++.+.+  ..|.++|+.+++.                                             ..+
T Consensus       238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~---------------------------------------------~~L  272 (419)
T PRK04043        238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL---------------------------------------------TQI  272 (419)
T ss_pred             eEECCCCCEEEEEEccCCCcEEEEEECCCCcE---------------------------------------------EEc
Confidence            78998444555555444  3455666655432                                             111


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcC--Cc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecCC---
Q 010784          342 AICKPILHSFSIMPSKSLICTGGI--GK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRDD---  412 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~--d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~d---  412 (501)
                      ..+........|+|||+.|+-.++  +.  |.+.|+.+++..    . .+..+.  .  ...|+|+ + ++.+....   
T Consensus       273 T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~----r-lt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        273 TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE----Q-VVFHGK--N--NSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE----e-CccCCC--c--CceECCCCCEEEEEEcCCCcc
Confidence            112222234579999987776663  22  888888876532    1 111121  1  2489999 4 44444332   


Q ss_pred             -----CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC-CCceEEEeeccCCccc
Q 010784          413 -----LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSNATCP  475 (501)
Q Consensus       413 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~~~~~~  475 (501)
                           ..|.+.|+.++.. ..+...      .......|+|||+.|+..+.. ....+.+.++......
T Consensus       344 ~~~~~~~I~v~d~~~g~~-~~LT~~------~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~  405 (419)
T PRK04043        344 FGKNTFNLYLISTNSDYI-RRLTAN------GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSF  405 (419)
T ss_pred             cCCCCcEEEEEECCCCCe-EECCCC------CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeE
Confidence                 3688889887764 334211      122357899999988877643 2234566666554443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=3.1e-06  Score=74.79  Aligned_cols=255  Identities=14%  Similarity=0.137  Sum_probs=150.1

Q ss_pred             EEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEE
Q 010784          134 IKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVST  211 (501)
Q Consensus       134 i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~  211 (501)
                      +++.+..+ .+....+.+|...|..++|+|.            +..++..++.+.+|+|.|  +..++..+..+ ..+.+
T Consensus       175 v~~l~~~~-fkssq~lp~~g~~IrdlafSp~------------~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wS  240 (463)
T KOG1645|consen  175 VQKLESHD-FKSSQILPGEGSFIRDLAFSPF------------NEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWS  240 (463)
T ss_pred             eEEeccCC-cchhhcccccchhhhhhccCcc------------ccceeeeeccCceEEEEecccceeeeheecc-CCcee
Confidence            34444333 3445567788889999999994            445899999999999999  56666777777 78999


Q ss_pred             EEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC--CCCceeEEEEeec-----CCeEEEEEeCCCeEE
Q 010784          212 LSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG--HEKPIKLMSVAGH-----KSFLLVTISKDSKVR  284 (501)
Q Consensus       212 l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~-----~~~~l~s~s~dg~v~  284 (501)
                      ++|..   .+.++++.|..+|.|.|||++..+.     .+..+.+  ...+|..++..+.     .+.+++..+.+  +.
T Consensus       241 C~wDl---de~h~IYaGl~nG~VlvyD~R~~~~-----~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~  310 (463)
T KOG1645|consen  241 CCWDL---DERHVIYAGLQNGMVLVYDMRQPEG-----PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQ  310 (463)
T ss_pred             eeecc---CCcceeEEeccCceEEEEEccCCCc-----hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hh
Confidence            99962   4577899999999999999987654     2322222  2334444433321     23344444433  55


Q ss_pred             EEECCCCccccceecccceecCCCceeeecCC--CeEEEEeCC-----cEE----EEEcCCCceEeeec-cC-CCc----
Q 010784          285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE--SMLYIASGS-----SVV----TIDLRTMQKVMTPA-IC-KPI----  347 (501)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~i~----~~d~~~~~~~~~~~-~~-~~~----  347 (501)
                      .|++.-...  ...++.....++..+++...+  +.+++....     +++    -.|-..+..+...+ ++ .++    
T Consensus       311 f~ei~~s~~--~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl  388 (463)
T KOG1645|consen  311 FYEIVFSAE--CLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKL  388 (463)
T ss_pred             hhhhhcccc--CCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccc
Confidence            666543221  112222335566666666655  333333221     111    12333343332111 12 111    


Q ss_pred             --EEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEEEEeC
Q 010784          348 --LHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWET  420 (501)
Q Consensus       348 --v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~  420 (501)
                        -..+.-.++.++++.-+++.  +.+||..+.+.+      +++.- ..+|..++....   .+++.- .|..++||..
T Consensus       389 ~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv------Q~l~~-~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~  460 (463)
T KOG1645|consen  389 STTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV------QTLAL-SEPVLDICPNDTNGSSYLALL-TDDRVHIYKN  460 (463)
T ss_pred             ccccceeccccccEEEEecCCcceeEEeccchhhee------eeccc-CcceeecceeecCCcchhhhe-ecceEEEEec
Confidence              01222234556666655444  999999997655      66654 477888766433   677775 6778999876


Q ss_pred             CC
Q 010784          421 DT  422 (501)
Q Consensus       421 ~~  422 (501)
                      ++
T Consensus       461 es  462 (463)
T KOG1645|consen  461 ES  462 (463)
T ss_pred             CC
Confidence            53

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.65  E-value=2.9e-05  Score=73.98  Aligned_cols=262  Identities=13%  Similarity=0.065  Sum_probs=140.1

Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccCCC--C--------ceE-EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHN--G--------PVS-TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK  244 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~--~--------~v~-~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~  244 (501)
                      +..++.++.+|.+.-+|  +|+.+-......  .        .+. .+..      .+..++.++.+|.+..+|..+++.
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v------~~~~v~v~~~~g~l~ald~~tG~~  142 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV------AGGKVYIGSEKGQVYALNAEDGEV  142 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE------ECCEEEEEcCCCEEEEEECCCCCC
Confidence            45666666777777777  565554332111  0        111 1121      345677788899999999999875


Q ss_pred             cccccceeeccCCCCceeE-EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc-eecCCCceeeecCCCeEEEE
Q 010784          245 RGQQALKATLYGHEKPIKL-MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM-TSVPGVPVDMKCHESMLYIA  322 (501)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~-l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  322 (501)
                            +-..... ..+.+ ..+.  + ..++.++.++.+..+|..+++.+-....... ....+. .......+.+++.
T Consensus       143 ------~W~~~~~-~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~-~sP~v~~~~v~~~  211 (394)
T PRK11138        143 ------AWQTKVA-GEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE-SAPATAFGGAIVG  211 (394)
T ss_pred             ------cccccCC-CceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC-CCCEEECCEEEEE
Confidence                  2222221 12211 1222  3 3566778889999999999987654332110 000000 0111123344554


Q ss_pred             eC-CcEEEEEcCCCceEeeeccCCC-------cEEEEEEcC--CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc
Q 010784          323 SG-SSVVTIDLRTMQKVMTPAICKP-------ILHSFSIMP--SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH  391 (501)
Q Consensus       323 ~~-~~i~~~d~~~~~~~~~~~~~~~-------~v~~v~~~~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h  391 (501)
                      .. +.+..+|..+++.+........       ....+..+|  .+..++.++.++ +..+|..+++..      -...  
T Consensus       212 ~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~------W~~~--  283 (394)
T PRK11138        212 GDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV------WKRE--  283 (394)
T ss_pred             cCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE------Eeec--
Confidence            43 4788899999887665432110       011111222  233454555555 999999998754      1111  


Q ss_pred             ccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          392 VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       392 ~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      ......+....+.+++. +.+|.+..+|..+|+.+-......    .........  .+.+|+.++  .+|.|.+.|..+
T Consensus       284 ~~~~~~~~~~~~~vy~~-~~~g~l~ald~~tG~~~W~~~~~~----~~~~~sp~v--~~g~l~v~~--~~G~l~~ld~~t  354 (394)
T PRK11138        284 YGSVNDFAVDGGRIYLV-DQNDRVYALDTRGGVELWSQSDLL----HRLLTAPVL--YNGYLVVGD--SEGYLHWINRED  354 (394)
T ss_pred             CCCccCcEEECCEEEEE-cCCCeEEEEECCCCcEEEcccccC----CCcccCCEE--ECCEEEEEe--CCCEEEEEECCC
Confidence            11122233444456555 589999999999997754432100    011111111  245666666  568888888666


Q ss_pred             Cc
Q 010784          472 AT  473 (501)
Q Consensus       472 ~~  473 (501)
                      ++
T Consensus       355 G~  356 (394)
T PRK11138        355 GR  356 (394)
T ss_pred             CC
Confidence            54

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.63  E-value=1.2e-07  Score=56.48  Aligned_cols=39  Identities=38%  Similarity=0.891  Sum_probs=36.1

Q ss_pred             CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEe
Q 010784          196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS  238 (501)
Q Consensus       196 ~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd  238 (501)
                      ++++.++.+|.+.|.+++|+    +++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~----~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWS----PDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEE----TTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEe----cccccceeeCCCCEEEEEC
Confidence            35788999999999999998    7899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.62  E-value=1e-06  Score=85.69  Aligned_cols=181  Identities=13%  Similarity=0.143  Sum_probs=122.3

Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      ++..++-|+....+..+|+++...      .+...-..+.|+-++.   +++.+.+|...|+|.+-|.++.         
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e------~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~---------  207 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKE------TRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSF---------  207 (1118)
T ss_pred             CCcceeecchhhheeeeeccccee------eeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcC---------
Confidence            345666677777777888887653      3333333334554444   4567778888888877777665         


Q ss_pred             cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC---------Cc-EEE
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI---------GK-AMT  370 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---------d~-i~i  370 (501)
                                                         +.++++..|.+.|..+..  .|++|++++.         |. |++
T Consensus       208 -----------------------------------~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkV  250 (1118)
T KOG1275|consen  208 -----------------------------------ETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKV  250 (1118)
T ss_pred             -----------------------------------ceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhh
Confidence                                               456778889999987765  6778887762         67 899


Q ss_pred             EecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCC-ccc-ccccccCCCCCCCcceeeeEe
Q 010784          371 WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT-GML-ANSLLCNYPEEADISTGCSAM  446 (501)
Q Consensus       371 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~~v~~~~~  446 (501)
                      ||+|+.+.+      ..+.-+.++ .-+.|+|.  ..++..|..|...+-|..+ +.+ ...+..   ......+..+.+
T Consensus       251 YDLRmmral------~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v---~p~~s~i~~fDi  320 (1118)
T KOG1275|consen  251 YDLRMMRAL------SPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV---NPNGSGISAFDI  320 (1118)
T ss_pred             hhhhhhhcc------CCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEE---ccCCCcceeEEe
Confidence            999997654      333333333 56778888  4555557889999998332 111 122211   112445899999


Q ss_pred             eccccEEEEeecCCCceEEEee
Q 010784          447 AVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       447 s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      |++|+.|+.|.  .+|.|.+|.
T Consensus       321 Ssn~~alafgd--~~g~v~~wa  340 (1118)
T KOG1275|consen  321 SSNGDALAFGD--HEGHVNLWA  340 (1118)
T ss_pred             cCCCceEEEec--ccCcEeeec
Confidence            99999999998  779999998

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.60  E-value=8.8e-05  Score=65.65  Aligned_cols=220  Identities=10%  Similarity=0.015  Sum_probs=131.1

Q ss_pred             ceEEeeC-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEee-ccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          114 DHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLF-PLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       114 ~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      ..++|++ ++.++.+.-..+.|..|+..++......+.+    ...+++. +             ++.+++ +...+ +.
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~-------------~g~l~v-~~~~~-~~   63 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRP-------------DGRLYV-ADSGG-IA   63 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECT-------------TSEEEE-EETTC-EE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEcc-------------CCEEEE-EEcCc-eE
Confidence            3578887 8888888888899999998875322222222    6677777 4             545444 44444 45


Q ss_pred             Eec--CCceeeecc----C-CCCceEEEEeeecCCCCCCEEEEeeCC--------CcEEEEeccCCCccccccceeeccC
Q 010784          192 LWW--KGSCQRCFK----G-HNGPVSTLSDKLLGDGSGKILASGGED--------ATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       192 vwd--~~~~~~~~~----~-h~~~v~~l~~s~~~~~~~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      ++|  +++......    . .....+.+++.    ++|++.++....        |.|..++.. ++       ......
T Consensus        64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd----~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-------~~~~~~  131 (246)
T PF08450_consen   64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVD----PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-------VTVVAD  131 (246)
T ss_dssp             EEETTTTEEEEEEEEETTCSCTEEEEEEEE-----TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-------EEEEEE
T ss_pred             EEecCCCcEEEEeeccCCCcccCCCceEEEc----CCCCEEEEecCCCccccccccceEEECCC-Ce-------EEEEec
Confidence            557  443322221    1 34567788885    889877775543        446666665 22       222222


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcc-ccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSA-VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM  335 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  335 (501)
                      .-...+.|+|+|+...++++-+..+.|..+++..... +...                                      
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~--------------------------------------  173 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNR--------------------------------------  173 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEE--------------------------------------
T ss_pred             CcccccceEECCcchheeecccccceeEEEeccccccceeee--------------------------------------
Confidence            3345678999984444556777888899998864321 1000                                      


Q ss_pred             ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec-CC--eEEEEe
Q 010784          336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD-PY--KIVTGG  409 (501)
Q Consensus       336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~--~~l~~g  409 (501)
                      +....+....+..-.+++..+|++.++....+ |.++|.. ++..      ..+......+++++|. ++  .++++.
T Consensus       174 ~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~------~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  174 RVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL------REIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE------EEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             eeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE------EEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            01111222224577899999998888776556 9999987 5433      4444444588999994 44  566553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=6.4e-06  Score=72.89  Aligned_cols=254  Identities=7%  Similarity=-0.058  Sum_probs=143.3

Q ss_pred             eEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784          190 IRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA  267 (501)
Q Consensus       190 i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  267 (501)
                      +++.+  +-+....+.+|...|..++|+|   ....++..++.+..|+|.|+++..      .+..+..+ ..+++.+|.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp---~~~GLl~~asl~nkiki~dlet~~------~vssy~a~-~~~wSC~wD  244 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSP---FNEGLLGLASLGNKIKIMDLETSC------VVSSYIAY-NQIWSCCWD  244 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCc---cccceeeeeccCceEEEEecccce------eeeheecc-CCceeeeec
Confidence            55555  3344456678899999999983   233388899999999999999976      46666666 789999999


Q ss_pred             ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee-------eecCCCeEEEEeCCcEEEEEcCCC--ceE
Q 010784          268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD-------MKCHESMLYIASGSSVVTIDLRTM--QKV  338 (501)
Q Consensus       268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~d~~~~--~~~  338 (501)
                      -++.++++.|-..|.|.+||++..+..........  ....+..       ..+.-.++++++......|.+.-.  ...
T Consensus       245 lde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~--t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p  322 (463)
T KOG1645|consen  245 LDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANV--TINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLP  322 (463)
T ss_pred             cCCcceeEEeccCceEEEEEccCCCchHhhhhhhh--ccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCC
Confidence            88888999999999999999997653221110000  0001111       122223334443334555544211  111


Q ss_pred             eeec-cCCCcEEEEEEcCCCcE-EEEEcC-----------------CcEEEEecCCCCCCCCCCCcccccCcccCeEEEE
Q 010784          339 MTPA-ICKPILHSFSIMPSKSL-ICTGGI-----------------GKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLH  399 (501)
Q Consensus       339 ~~~~-~~~~~v~~v~~~~~~~~-l~~~~~-----------------d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~  399 (501)
                      ...+ ...+...+++..+-.+. +++.-.                 |+-.||.-+..--   ..  ..-+-+..  ..+.
T Consensus       323 ~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~---Gs--~~~kl~t~--~ai~  395 (463)
T KOG1645|consen  323 CVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF---GS--KQTKLSTT--QAIR  395 (463)
T ss_pred             cccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc---CC--cccccccc--ccee
Confidence            1111 12455556666654333 333222                 2233333222100   00  00000111  1121


Q ss_pred             ecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec-c-ccEEEEeecCCCceEEEeeccC
Q 010784          400 MDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV-S-GCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       400 ~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~-g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      -.++  .++..|..-+.+.+||..+++.++++..      +.+|..++... + +.+|++-.   |..++++..+.
T Consensus       396 ~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~------~epv~Dicp~~~n~~syLa~LT---d~~v~Iyk~es  462 (463)
T KOG1645|consen  396 AVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL------SEPVLDICPNDTNGSSYLALLT---DDRVHIYKNES  462 (463)
T ss_pred             ccccccEEEEecCCcceeEEeccchhheeeeccc------CcceeecceeecCCcchhhhee---cceEEEEecCC
Confidence            2233  5566666778899999999999999953      34566655443 2 34666654   35788876543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.57  E-value=1.3e-06  Score=85.14  Aligned_cols=190  Identities=15%  Similarity=0.129  Sum_probs=124.5

Q ss_pred             cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      ++..++-|+....+..+|  +.+..+...-..+.|.-|+      .+++++++|...|+|.+-|.++.+      .++++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR------~Nnr~lf~G~t~G~V~LrD~~s~~------~iht~  213 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR------YNNRNLFCGDTRGTVFLRDPNSFE------TIHTF  213 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE------ecCcEEEeecccceEEeecCCcCc------eeeee
Confidence            345666777767777777  4444444443444577777      478899999999999999999987      59999


Q ss_pred             cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                      ..|++.|..+.+   .++.|++++..+......                                   .+.-+.+||++.
T Consensus       214 ~aHs~siSDfDv---~GNlLitCG~S~R~~~l~-----------------------------------~D~FvkVYDLRm  255 (1118)
T KOG1275|consen  214 DAHSGSISDFDV---QGNLLITCGYSMRRYNLA-----------------------------------MDPFVKVYDLRM  255 (1118)
T ss_pred             eccccceeeeec---cCCeEEEeeccccccccc-----------------------------------ccchhhhhhhhh
Confidence            999999997776   467899988654321111                                   111244555555


Q ss_pred             CceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC
Q 010784          335 MQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD  411 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~  411 (501)
                      .+.+.-+.-+.++ .-+.|.|. ...+++++..+ ..+-|..+....  ...+..+......+.+++++++ ..++.|..
T Consensus       256 mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSsn~~alafgd~  332 (1118)
T KOG1275|consen  256 MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISSNGDALAFGDH  332 (1118)
T ss_pred             hhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEccCCCcceeEEecCCCceEEEecc
Confidence            5444433333333 34566775 34455555444 888884433221  1222333444556999999999 99999999


Q ss_pred             CCcEEEEe
Q 010784          412 DLRINIWE  419 (501)
Q Consensus       412 dg~i~iwd  419 (501)
                      +|.|.+|.
T Consensus       333 ~g~v~~wa  340 (1118)
T KOG1275|consen  333 EGHVNLWA  340 (1118)
T ss_pred             cCcEeeec
Confidence            99999997

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.52  E-value=3.1e-05  Score=68.29  Aligned_cols=211  Identities=14%  Similarity=0.063  Sum_probs=125.9

Q ss_pred             CCcEEEEeccCCCccccccceeeccC---CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCC
Q 010784          231 DATVRLWSLSSSGKRGQQALKATLYG---HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG  307 (501)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  307 (501)
                      +|.|..||..+++.      +-....   ....+ +..+.  ++..+++++.++.|..||..+++.+.....      ..
T Consensus         2 ~g~l~~~d~~tG~~------~W~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~------~~   66 (238)
T PF13360_consen    2 DGTLSALDPRTGKE------LWSYDLGPGIGGPV-ATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL------PG   66 (238)
T ss_dssp             TSEEEEEETTTTEE------EEEEECSSSCSSEE-ETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC------SS
T ss_pred             CCEEEEEECCCCCE------EEEEECCCCCCCcc-ceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec------cc
Confidence            68899999988764      333321   22222 11222  344677778999999999999976544332      11


Q ss_pred             Cce-eeecCCCeEEEEe-CCcEEEEEcCCCceEeee-ccCC---CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784          308 VPV-DMKCHESMLYIAS-GSSVVTIDLRTMQKVMTP-AICK---PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV  380 (501)
Q Consensus       308 ~~~-~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~-~~~~---~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  380 (501)
                      ... ......+.+++.+ ++.+..+|.++++.+... ....   ..........++..++.+..++ |..+|.++++.+ 
T Consensus        67 ~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~-  145 (238)
T PF13360_consen   67 PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL-  145 (238)
T ss_dssp             CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEE-
T ss_pred             cccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEE-
Confidence            111 1244556666665 458999999999998874 3221   1112222222366777777555 999999998764 


Q ss_pred             CCCCcccccCcccC-----------eEEEEecCCeEEEEecCCCc-EEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784          381 KPQPMAELDGHVGS-----------VTQLHMDPYKIVTGGRDDLR-INIWETDTGMLANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       381 ~~~~~~~~~~h~~~-----------v~~l~~~~~~~l~~gs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                           .........           ...+.+..+.++++ +.++. +.+ |+.+++.+-...       ...+.. ....
T Consensus       146 -----w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~g~~~~~-d~~tg~~~w~~~-------~~~~~~-~~~~  210 (238)
T PF13360_consen  146 -----WKYPVGEPRGSSPISSFSDINGSPVISDGRVYVS-SGDGRVVAV-DLATGEKLWSKP-------ISGIYS-LPSV  210 (238)
T ss_dssp             -----EEEESSTT-SS--EEEETTEEEEEECCTTEEEEE-CCTSSEEEE-ETTTTEEEEEEC-------SS-ECE-CEEC
T ss_pred             -----EEeecCCCCCCcceeeecccccceEEECCEEEEE-cCCCeEEEE-ECCCCCEEEEec-------CCCccC-Ccee
Confidence                 222221111           13334444466665 46775 555 999998653321       111222 2557


Q ss_pred             cccEEEEeecCCCceEEEeeccCCcc
Q 010784          449 SGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       449 ~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      ++..|+.++  .++.|..||..+++.
T Consensus       211 ~~~~l~~~~--~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  211 DGGTLYVTS--SDGRLYALDLKTGKV  234 (238)
T ss_dssp             CCTEEEEEE--TTTEEEEEETTTTEE
T ss_pred             eCCEEEEEe--CCCEEEEEECCCCCE
Confidence            888888887  569999999998864

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=2.7e-05  Score=75.78  Aligned_cols=195  Identities=14%  Similarity=0.086  Sum_probs=128.6

Q ss_pred             cCcEEEEeeCCCceEEec-CCceeeeccCCCCc-eEEEEeeecCCCCCCEEEEeeCCCc-----EEEEeccCCCcccccc
Q 010784          177 TENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGP-VSTLSDKLLGDGSGKILASGGEDAT-----VRLWSLSSSGKRGQQA  249 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~-v~~l~~s~~~~~~~~~l~sg~~dg~-----i~iwd~~~~~~~~~~~  249 (501)
                      .+..++.|+.+|.|.+.+ .-+.++.++.+... |..+..    ....++|++.+.|+.     ++||+++..+......
T Consensus        34 ~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~----~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   34 STGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYI----LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             CCceEEEeeccccEEEecccceeeehheecchhhhhHhhc----ccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            678999999999999999 44555888888777 544443    134468888777654     8999998754322122


Q ss_pred             ce--eeccC-----CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC--CCe-E
Q 010784          250 LK--ATLYG-----HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH--ESM-L  319 (501)
Q Consensus       250 ~~--~~~~~-----~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~  319 (501)
                      ++  ..+..     ...++.+++++. +-+.++.|-.+|.|..+.-.-...... ...........+..+.+.  +.. +
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceeeEEecCCceeE
Confidence            22  11212     356788999985 677899999999998885322111000 111111233344444333  333 6


Q ss_pred             EEEeCCcEEEEEcCCCce-EeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCC
Q 010784          320 YIASGSSVVTIDLRTMQK-VMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQ  377 (501)
Q Consensus       320 ~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~  377 (501)
                      ++++...|.+|.+....+ ...+..|...+.|..+++....+++++...+.+|+....+
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRG  246 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcc
Confidence            788888999999985552 4457778888999999876665777777779999988644

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=1.4e-05  Score=77.20  Aligned_cols=188  Identities=17%  Similarity=0.152  Sum_probs=126.6

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      ++|++++  +.+++-|..+|.+++.+...  .+ ++...|+..      ..             +|.+++||+.||+|.|
T Consensus        42 is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~-------------~Gey~asCS~DGkv~I   97 (846)
T KOG2066|consen   42 ISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------IL-------------EGEYVASCSDDGKVVI   97 (846)
T ss_pred             HHHHHhh--cceeeeccccceEEEEecCC--cc-ccccccccc------cc-------------CCceEEEecCCCcEEE
Confidence            6777776  57899999999999999873  33 444456554      22             7999999999999999


Q ss_pred             ec--CCceeeeccCCCCceEEEEeeecC-CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784          193 WW--KGSCQRCFKGHNGPVSTLSDKLLG-DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH  269 (501)
Q Consensus       193 wd--~~~~~~~~~~h~~~v~~l~~s~~~-~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  269 (501)
                      -.  +.+....+. -..++.+++++|.. ....+.+++|+.-| +.++.-+-.+.   . ....+..-.++|.++.|.  
T Consensus        98 ~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn---k-~~v~l~~~eG~I~~i~W~--  169 (846)
T KOG2066|consen   98 GSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN---K-DSVVLSEGEGPIHSIKWR--  169 (846)
T ss_pred             eeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC---c-cceeeecCccceEEEEec--
Confidence            86  444444333 35689999997431 12356889999888 77765433221   0 112355567899999995  


Q ss_pred             CCeEEEEEeCCCeEEEEECCCCccccceeccc-ceecCCCceeeecCCC-eEEEEeCCcEEEEEcCC
Q 010784          270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG-MTSVPGVPVDMKCHES-MLYIASGSSVVTIDLRT  334 (501)
Q Consensus       270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~d~~~  334 (501)
                       +++++-++.+| |+|||+.+++.+....... .......+..+.|.++ .+++.-+.+|.+..++.
T Consensus       170 -g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  170 -GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKK  234 (846)
T ss_pred             -CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEec
Confidence             56888888777 8999999887655443322 1133334445555544 45566677888888873

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.48  E-value=0.00028  Score=62.08  Aligned_cols=236  Identities=11%  Similarity=0.084  Sum_probs=134.2

Q ss_pred             cCcEEEEeeCCCc-eEEec--CCceeeeccCCCCce--EEEEeeecCCCCCCEEEEe-----eCCCcEEEEeccCCCccc
Q 010784          177 TENVLVTSSCDHS-IRLWW--KGSCQRCFKGHNGPV--STLSDKLLGDGSGKILASG-----GEDATVRLWSLSSSGKRG  246 (501)
Q Consensus       177 ~~~~l~s~~~dg~-i~vwd--~~~~~~~~~~h~~~v--~~l~~s~~~~~~~~~l~sg-----~~dg~i~iwd~~~~~~~~  246 (501)
                      ....++.+-.-|+ ..+||  +++....+....+.-  -.-.|+    ++|++|++.     ...|.|-|||...+-.  
T Consensus        16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs----~dG~~LytTEnd~~~g~G~IgVyd~~~~~~--   89 (305)
T PF07433_consen   16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFS----PDGRLLYTTENDYETGRGVIGVYDAARGYR--   89 (305)
T ss_pred             CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEc----CCCCEEEEeccccCCCcEEEEEEECcCCcE--
Confidence            4556666666655 44566  555554443322211  124676    899999985     3458899999994332  


Q ss_pred             cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784          247 QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS  326 (501)
Q Consensus       247 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (501)
                         .+..+..|.-.-..+.+.| ++..|+.+-  |-|.- ..++++..               +        .+-.....
T Consensus        90 ---ri~E~~s~GIGPHel~l~p-DG~tLvVAN--GGI~T-hpd~GR~k---------------L--------Nl~tM~ps  139 (305)
T PF07433_consen   90 ---RIGEFPSHGIGPHELLLMP-DGETLVVAN--GGIET-HPDSGRAK---------------L--------NLDTMQPS  139 (305)
T ss_pred             ---EEeEecCCCcChhhEEEcC-CCCEEEEEc--CCCcc-CcccCcee---------------c--------ChhhcCCc
Confidence               4666666665556677887 665555543  11211 01111100               0        00011124


Q ss_pred             EEEEEcCCCceEee--e--ccCCCcEEEEEEcCCCcEEEEEcC-----Cc---EEEEecCCCCCCCCCCCcccccCcccC
Q 010784          327 VVTIDLRTMQKVMT--P--AICKPILHSFSIMPSKSLICTGGI-----GK---AMTWDIRRSQDAVKPQPMAELDGHVGS  394 (501)
Q Consensus       327 i~~~d~~~~~~~~~--~--~~~~~~v~~v~~~~~~~~l~~~~~-----d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~  394 (501)
                      +...|..+++.+..  +  ..|.-.|..+++.++|..++..-.     +.   +-+++....-.. ...+-.....-.+.
T Consensus       140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~-~~~p~~~~~~l~~Y  218 (305)
T PF07433_consen  140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRL-LPAPEEQWRRLNGY  218 (305)
T ss_pred             eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCccee-ccCChHHHHhhCCc
Confidence            55567777777655  3  236778999999999876665431     12   333333321000 00011112233567


Q ss_pred             eEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          395 VTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       395 v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      +-+|+++++  .+.+++-.-+.+.+||..+++.+.....       ..+..++-.+++ ++++.+
T Consensus       219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-------~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-------PDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-------CceeeeeecCCc-eEEeCC
Confidence            899999998  4556666788999999999999887742       235556666666 666654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=0.00014  Score=71.03  Aligned_cols=205  Identities=12%  Similarity=0.097  Sum_probs=127.9

Q ss_pred             EeeCCcEEEeecCCeeeEEEEecccccccceecccCCcc-eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc-----e
Q 010784          117 LLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKAR-ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS-----I  190 (501)
Q Consensus       117 ~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~-----i  190 (501)
                      ++++++..+|.|+.+|.|.+.+-.  .+.++.++.+... |..+....             ..++|++-+.|+.     +
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~-------------~~~~L~sv~Ed~~~np~ll   94 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILN-------------KQNFLFSVGEDEQGNPVLL   94 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhccc-------------CceEEEEEeecCCCCceEE
Confidence            467889999999999998887755  5666788888888 55444433             3478888777754     8


Q ss_pred             EEec-------C-Ccee---eecc----CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          191 RLWW-------K-GSCQ---RCFK----GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       191 ~vwd-------~-~~~~---~~~~----~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      +||+       + ..++   +.+.    ....++.+++.+    .+-+.+|.|-.||.|..+.-+--...+.  ......
T Consensus        95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs----~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs--r~~~~~  168 (933)
T KOG2114|consen   95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS----EDLKTIVCGFTNGLVICYKGDILRDRGS--RQDYSH  168 (933)
T ss_pred             EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE----ccccEEEEEecCcEEEEEcCcchhcccc--ceeeec
Confidence            9997       1 2233   1111    135678888887    6788999999999999985432211110  122223


Q ss_pred             CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-ecCCCceeeecCCCe--EEEEeCCcEEEEEc
Q 010784          256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGVPVDMKCHESM--LYIASGSSVVTIDL  332 (501)
Q Consensus       256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~i~~~d~  332 (501)
                      ....+|+.+.+.. ++..++.+..-..|.+|.+.... ..    .... .......+..+++..  .+++.+..+.+||.
T Consensus       169 ~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr~-p~----~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~s  242 (933)
T KOG2114|consen  169 RGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGRT-PS----LKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDS  242 (933)
T ss_pred             cCCCCceeeEEec-CCceeEEEEecceeEEEEecCCC-cc----eeeeccCCccceeeecCCCCccEEEecCceEEEEcC
Confidence            3467999999985 55442333344679999988432 11    1111 223333444444433  34444558999998


Q ss_pred             CCCceEeeec-cCCCcE
Q 010784          333 RTMQKVMTPA-ICKPIL  348 (501)
Q Consensus       333 ~~~~~~~~~~-~~~~~v  348 (501)
                      ...+....+. +|....
T Consensus       243 d~~~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  243 DGRGPCFAFEVGEKKEM  259 (933)
T ss_pred             CCcceeeeecCCCeEEE
Confidence            8777766766 554443

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=98.30  E-value=1.9e-06  Score=73.99  Aligned_cols=57  Identities=18%  Similarity=0.422  Sum_probs=49.6

Q ss_pred             CCCcccccccHHHHHHHHh-----cCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCcc
Q 010784           15 PSTTAIADLNEDAVAHCAL-----NLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQV   71 (501)
Q Consensus        15 ~~~~~~~~Lp~e~~~~i~~-----~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~   71 (501)
                      |....|..||+||+..||.     .||.++|.++|+|||.|+..++++.+|+..|-+.|.+.
T Consensus       102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s  163 (366)
T KOG2997|consen  102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRS  163 (366)
T ss_pred             hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            3344577899999999985     56789999999999999999999999999999998743

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.29  E-value=0.0002  Score=72.78  Aligned_cols=244  Identities=11%  Similarity=0.039  Sum_probs=138.4

Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRV  285 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~v  285 (501)
                      ...|.++.|.    .+.+.++.+..+|.|.+-|..+..       ......-...|.+++|+| ++..++..+.++++.+
T Consensus        68 d~~i~s~~fl----~d~~~i~v~~~~G~iilvd~et~~-------~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~  135 (1265)
T KOG1920|consen   68 DDEIVSVQFL----ADTNSICVITALGDIILVDPETLE-------LEIVGNVDNGISAASWSP-DEELLALITGRQTLLF  135 (1265)
T ss_pred             CcceEEEEEe----cccceEEEEecCCcEEEEcccccc-------eeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEE
Confidence            3688999997    778888888999999999887764       333444567899999998 7888888888777766


Q ss_pred             EECCCCccccceecccceecCCCceeeecCCCe-EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784          286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG  364 (501)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  364 (501)
                      -.- +-.++............+....+.|.... .+=.+.+.....+..............+.=++|.|--||+++++..
T Consensus       136 mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~  214 (1265)
T KOG1920|consen  136 MTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF  214 (1265)
T ss_pred             Eec-cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence            432 22222111111111112222222222111 1111111111111100000000000112234689999999999843


Q ss_pred             ----CC-c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEe---cCCCcEEEEeCCCcccccccccCCC
Q 010784          365 ----IG-K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGG---RDDLRINIWETDTGMLANSLLCNYP  434 (501)
Q Consensus       365 ----~d-~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~g---s~dg~i~iwd~~~~~~~~~~~~~~~  434 (501)
                          .| + |++||.. +..-      ..-..-.+.-.+++|-|. .++++-   +.|+.|.+|. ++|.....|....+
T Consensus       215 ~~~~~~~RkirV~drE-g~Ln------s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p  286 (1265)
T KOG1920|consen  215 VESETGTRKIRVYDRE-GALN------STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFP  286 (1265)
T ss_pred             EeccCCceeEEEeccc-chhh------cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCc
Confidence                34 6 9999987 3322      111122333457899998 565552   3566899998 45666555544333


Q ss_pred             CCCCcceeeeEeeccccEEEEeecC-CCceEEEeeccC
Q 010784          435 EEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSN  471 (501)
Q Consensus       435 ~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~~  471 (501)
                      . ....+..++|+.++..|++-... +...|++|-+.+
T Consensus       287 ~-de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  287 L-DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             c-cccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence            2 22338999999999999983322 344599987654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.28  E-value=0.00012  Score=70.00  Aligned_cols=156  Identities=16%  Similarity=0.159  Sum_probs=104.1

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      +.--+++..+.+++.|+..|.+.+++-..+........+-.+.+..+..++             +..++|.|+..|.|.+
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-------------~e~lvAagt~~g~V~v  102 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-------------VEYLVAAGTASGRVSV  102 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-------------hhHhhhhhcCCceEEe
Confidence            344456778899999999999999998876444444445455566666676             6788888888999988


Q ss_pred             ec--C---Cceee--ec-cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          193 WW--K---GSCQR--CF-KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       193 wd--~---~~~~~--~~-~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      +-  .   +..+.  .+ +.|...|+|++|+    +++..+++|...|.|..-.++....  -.-..+.+..-.+.|..|
T Consensus       103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws----~~~~k~ysGD~~Gkv~~~~L~s~~~--~~~~~q~il~~ds~IVQl  176 (726)
T KOG3621|consen  103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWS----KNGMKLYSGDSQGKVVLTELDSRQA--FLSKSQEILSEDSEIVQL  176 (726)
T ss_pred             ehhhccCCCcceeeccccccCCceEEEEEec----ccccEEeecCCCceEEEEEechhhh--hccccceeeccCcceEEe
Confidence            85  1   11111  11 2478899999997    8999999999999999988887210  001233344455677777


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCC
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTS  291 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~  291 (501)
                      ...  .+.+|++....  -.+++.+.+
T Consensus       177 D~~--q~~LLVStl~r--~~Lc~tE~e  199 (726)
T KOG3621|consen  177 DYL--QSYLLVSTLTR--CILCQTEAE  199 (726)
T ss_pred             ecc--cceehHhhhhh--hheeecchh
Confidence            765  44455544432  344555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=4.3e-07  Score=77.54  Aligned_cols=47  Identities=21%  Similarity=0.347  Sum_probs=43.1

Q ss_pred             cccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHH
Q 010784           18 TAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLF   64 (501)
Q Consensus        18 ~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~   64 (501)
                      .....||+|+++.||+.|.-++|.+++.||++||++++++.+|+.+-
T Consensus        96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lD  142 (419)
T KOG2120|consen   96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLD  142 (419)
T ss_pred             CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeec
Confidence            33567999999999999999999999999999999999999999654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=0.0013  Score=62.77  Aligned_cols=209  Identities=8%  Similarity=-0.022  Sum_probs=112.3

Q ss_pred             eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcE-EEEeeCC---CceEEec-CCceeeeccCC
Q 010784          131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV-LVTSSCD---HSIRLWW-KGSCQRCFKGH  205 (501)
Q Consensus       131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d---g~i~vwd-~~~~~~~~~~h  205 (501)
                      ...+.+-|.... . .+.+.... .+....|+|             +|+. ++..+.+   ..|.++| .+.....+...
T Consensus       168 ~~~l~~~d~dg~-~-~~~~~~~~-~~~~p~wSp-------------DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~  231 (419)
T PRK04043        168 KSNIVLADYTLT-Y-QKVIVKGG-LNIFPKWAN-------------KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS  231 (419)
T ss_pred             cceEEEECCCCC-c-eeEEccCC-CeEeEEECC-------------CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC
Confidence            455556565532 2 33233333 677889998             7774 5544443   4566777 33333333334


Q ss_pred             CCceEEEEeeecCCCCCCEEE-EeeCC--CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCC
Q 010784          206 NGPVSTLSDKLLGDGSGKILA-SGGED--ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDS  281 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~-sg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg  281 (501)
                      .+......|+    |+|+.++ +.+.+  ..|.++|+.++.       ...+..+........|+| +++.|+..+ ..+
T Consensus       232 ~g~~~~~~~S----PDG~~la~~~~~~g~~~Iy~~dl~~g~-------~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g  299 (419)
T PRK04043        232 QGMLVVSDVS----KDGSKLLLTMAPKGQPDIYLYDTNTKT-------LTQITNYPGIDVNGNFVE-DDKRIVFVSDRLG  299 (419)
T ss_pred             CCcEEeeEEC----CCCCEEEEEEccCCCcEEEEEECCCCc-------EEEcccCCCccCccEECC-CCCEEEEEECCCC
Confidence            5556667887    7887665 44434  457777876654       233333333233457998 555444444 333


Q ss_pred             --eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC----------CcEEEEEcCCCceEeeeccCCCcEE
Q 010784          282 --KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG----------SSVVTIDLRTMQKVMTPAICKPILH  349 (501)
Q Consensus       282 --~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~d~~~~~~~~~~~~~~~~v~  349 (501)
                        .|.+.|+.+++..+...     . ......++.+++.++....          ..|.+.|+.++.... +... ....
T Consensus       300 ~~~Iy~~dl~~g~~~rlt~-----~-g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~  371 (419)
T PRK04043        300 YPNIFMKKLNSGSVEQVVF-----H-GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQ  371 (419)
T ss_pred             CceEEEEECCCCCeEeCcc-----C-CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcC
Confidence              57788888765422111     0 0011233334443433321          257888888776533 3222 2333


Q ss_pred             EEEEcCCCcEEEEEcC-Cc---EEEEecCC
Q 010784          350 SFSIMPSKSLICTGGI-GK---AMTWDIRR  375 (501)
Q Consensus       350 ~v~~~~~~~~l~~~~~-d~---i~iwd~~~  375 (501)
                      ...|+|||+.++..+. ++   +.+.++..
T Consensus       372 ~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        372 FPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            5889999998776552 22   66666654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.18  E-value=3.3e-06  Score=79.18  Aligned_cols=203  Identities=15%  Similarity=0.239  Sum_probs=131.7

Q ss_pred             CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784          153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG  228 (501)
Q Consensus       153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg  228 (501)
                      ...+.|++++-..           +..+++.|..+|.|.+-.    ....-....+|..+.++++|.   .-|.+.||.|
T Consensus        56 tqy~kcva~~y~~-----------d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwn---eLDtn~LAag  121 (783)
T KOG1008|consen   56 TQYVKCVASFYGN-----------DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWN---ELDTNHLAAG  121 (783)
T ss_pred             CCCceeehhhcCC-----------chhhhhhccccCceEEeecCCcccccceecccccccccccccc---cccHHHHHhh
Confidence            3457788776532           446888999999998875    112234556788999999997   3566788877


Q ss_pred             e----CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784          229 G----EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       229 ~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                      -    .|..+.|||+.+.-..+...... ..+......+++|. .+..++++|.....++++|++......         
T Consensus       122 ldkhrnds~~~Iwdi~s~ltvPke~~~f-s~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~---------  190 (783)
T KOG1008|consen  122 LDKHRNDSSLKIWDINSLLTVPKESPLF-SSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSV---------  190 (783)
T ss_pred             hhhhcccCCccceecccccCCCcccccc-ccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhh---------
Confidence            4    36689999998863211111111 11233345577887 478889999998899999998532100         


Q ss_pred             cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCcEEEEe-cCCCCCCCCC
Q 010784          305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGKAMTWD-IRRSQDAVKP  382 (501)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~i~iwd-~~~~~~~~~~  382 (501)
                                                          .......+..+.+.| .+.++++-.+|-|.+|| .++.+..   
T Consensus       191 ------------------------------------~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienp---  231 (783)
T KOG1008|consen  191 ------------------------------------SSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENP---  231 (783)
T ss_pred             ------------------------------------hhhhhhhcccceecCCCCCceeccccCceeeccchhhhccH---
Confidence                                                001134456677888 67888888755599999 5554332   


Q ss_pred             CCcccccCccc----CeEEEEecCC--eEEEEec-CCCcEEEEeCC
Q 010784          383 QPMAELDGHVG----SVTQLHMDPY--KIVTGGR-DDLRINIWETD  421 (501)
Q Consensus       383 ~~~~~~~~h~~----~v~~l~~~~~--~~l~~gs-~dg~i~iwd~~  421 (501)
                        +..+.....    .+..++|.|.  .++++.+ ..++|+++|+.
T Consensus       232 --l~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  232 --LQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             --HHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence              333332222    4899999998  5555554 45679999986

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.16  E-value=0.0016  Score=66.51  Aligned_cols=235  Identities=13%  Similarity=0.067  Sum_probs=134.0

Q ss_pred             cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784          154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA  232 (501)
Q Consensus       154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg  232 (501)
                      +.|.++.|..             +++.++.+..+|.|.+-| ....+.....-...|.+++|+    ++++.++..+..+
T Consensus        69 ~~i~s~~fl~-------------d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS----~Dee~l~liT~~~  131 (1265)
T KOG1920|consen   69 DEIVSVQFLA-------------DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWS----PDEELLALITGRQ  131 (1265)
T ss_pred             cceEEEEEec-------------ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeec----CCCcEEEEEeCCc
Confidence            4677777776             788899999999999998 333333333456789999997    8999999888888


Q ss_pred             cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC-----ccccceecccceecCC
Q 010784          233 TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS-----SAVRSSCCVGMTSVPG  307 (501)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~-----~~~~~~~~~~~~~~~~  307 (501)
                      ++.+-+-. ...      +....-+..      -.  ....++.+++...=.-+.-..+     +.+.............
T Consensus       132 tll~mT~~-f~~------i~E~~L~~d------~~--~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~  196 (1265)
T KOG1920|consen  132 TLLFMTKD-FEP------IAEKPLDAD------DE--RKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD  196 (1265)
T ss_pred             EEEEEecc-ccc------hhccccccc------cc--cccccceecccccceeeecchhhhcccccccccccccchhhcc
Confidence            87665432 110      111000100      00  0112223332221111111111     1111111111112344


Q ss_pred             CceeeecCCCeEEEEe-------C-CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc---CCc-EEEEecCC
Q 010784          308 VPVDMKCHESMLYIAS-------G-SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG---IGK-AMTWDIRR  375 (501)
Q Consensus       308 ~~~~~~~~~~~~~~~~-------~-~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~---~d~-i~iwd~~~  375 (501)
                      .-..+.|.+++.+++.       + ..+++||-+ +..-.+-....+.-.+++|-|.|..+++-.   ++. |.+|.-+.
T Consensus       197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG  275 (1265)
T KOG1920|consen  197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG  275 (1265)
T ss_pred             CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence            4556777777755554       2 379999987 444333333345556899999999998765   444 88887553


Q ss_pred             CCCCCCCCCcccccCcccCeEEEEecCC-eEEEE---ecCCCcEEEEeCCCcc
Q 010784          376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG---GRDDLRINIWETDTGM  424 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~---gs~dg~i~iwd~~~~~  424 (501)
                      -..   ......+......|..++|+.+ .+++.   ......|++|-+.+..
T Consensus       276 L~h---g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  276 LRH---GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ccc---cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            221   1112223333445999999998 77766   4445559999988743

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.14  E-value=2.2e-06  Score=80.40  Aligned_cols=210  Identities=16%  Similarity=0.191  Sum_probs=135.7

Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe----CCC
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS----KDS  281 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s----~dg  281 (501)
                      ...+.|+++..  +.+..+++.|..+|.|.+-.++.....    -.....++..+.++++|++-+.+.|++|-    .|.
T Consensus        56 tqy~kcva~~y--~~d~cIlavG~atG~I~l~s~r~~hdS----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds  129 (783)
T KOG1008|consen   56 TQYVKCVASFY--GNDRCILAVGSATGNISLLSVRHPHDS----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS  129 (783)
T ss_pred             CCCceeehhhc--CCchhhhhhccccCceEEeecCCcccc----cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence            34556666531  233468889999999999888765431    13455678889999999987778888773    356


Q ss_pred             eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec-cCCCcEEEEEEcCCCcEE
Q 010784          282 KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-ICKPILHSFSIMPSKSLI  360 (501)
Q Consensus       282 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l  360 (501)
                      .+.+||+.++-......                                        ..+. +......+++|..+.+++
T Consensus       130 ~~~Iwdi~s~ltvPke~----------------------------------------~~fs~~~l~gqns~cwlrd~klv  169 (783)
T KOG1008|consen  130 SLKIWDINSLLTVPKES----------------------------------------PLFSSSTLDGQNSVCWLRDTKLV  169 (783)
T ss_pred             CccceecccccCCCccc----------------------------------------cccccccccCccccccccCcchh
Confidence            78999998762100000                                        0000 012334588888889999


Q ss_pred             EEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEe-CCCc-ccccccccCCCC
Q 010784          361 CTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWE-TDTG-MLANSLLCNYPE  435 (501)
Q Consensus       361 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd-~~~~-~~~~~~~~~~~~  435 (501)
                      .+|...+ +.++|++.....     ...+  .+..+..+.++|-  .++++. .||.|.+|| ..+- .++..+. +.+.
T Consensus       170 laGm~sr~~~ifdlRqs~~~-----~~sv--nTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~-~~~N  240 (783)
T KOG1008|consen  170 LAGMTSRSVHIFDLRQSLDS-----VSSV--NTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIIL-RNEN  240 (783)
T ss_pred             hcccccchhhhhhhhhhhhh-----hhhh--hhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHh-hCCC
Confidence            9999887 999999953211     1222  2446777888884  777774 699999999 4332 2333332 2212


Q ss_pred             CCCcceeeeEeecccc-EEEEeecCCCceEEEeeccC
Q 010784          436 EADISTGCSAMAVSGC-RIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       436 ~~~~~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~  471 (501)
                      .....+..++|+|... .+++... +.++|+.+++..
T Consensus       241 ~~~~~l~~~aycPtrtglla~l~R-dS~tIrlydi~~  276 (783)
T KOG1008|consen  241 KKPKQLFALAYCPTRTGLLAVLSR-DSITIRLYDICV  276 (783)
T ss_pred             CcccceeeEEeccCCcchhhhhcc-CcceEEEecccc
Confidence            2233588999999754 4555544 678999999764

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.12  E-value=0.014  Score=58.80  Aligned_cols=331  Identities=10%  Similarity=0.071  Sum_probs=173.6

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      +++...+.+...++.++.++.+...++..+.-....-+.-...|.|+.++|.++.+.       ..++++.|..+..+.+
T Consensus       490 ~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~-------~s~~~aVG~Ws~~~~~  562 (1096)
T KOG1897|consen  490 ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPN-------KSRLLAVGLWSDISMI  562 (1096)
T ss_pred             eEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCC-------cceEEEEEeecceEEE
Confidence            455555555556665555566666665543211111122346799999998653221       1247888888877766


Q ss_pred             ec---CCceeee--ccC--CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784          193 WW---KGSCQRC--FKG--HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS  265 (501)
Q Consensus       193 wd---~~~~~~~--~~~--h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  265 (501)
                      --   ....+..  +.+  -...|.-..|-    .+..+|.++..||.+.-+.++...-.  ..-.+...--+.|+.--.
T Consensus       563 l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e----~d~~yLlvalgdG~l~~fv~d~~tg~--lsd~Kk~~lGt~P~~Lr~  636 (1096)
T KOG1897|consen  563 LTFLPDLILITHEQLSGEIIPRSILLTTFE----GDIHYLLVALGDGALLYFVLDINTGQ--LSDRKKVTLGTQPISLRT  636 (1096)
T ss_pred             EEECCCcceeeeeccCCCccchheeeEEee----ccceEEEEEcCCceEEEEEEEcccce--EccccccccCCCCcEEEE
Confidence            52   2211111  111  12334444552    55889999999999987766543210  000010111122333223


Q ss_pred             EeecCCeEEEEEeC--------CC---------------------------------eEEEEECCCCccccceeccccee
Q 010784          266 VAGHKSFLLVTISK--------DS---------------------------------KVRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       266 ~~~~~~~~l~s~s~--------dg---------------------------------~v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                      |.....+.+++++.        .+                                 .+++.-+..-+.+    ...+..
T Consensus       637 f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl----~irtvp  712 (1096)
T KOG1897|consen  637 FSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKL----HIRTVP  712 (1096)
T ss_pred             EeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhc----ceeeec
Confidence            33222222222221        11                                 1222221111100    000112


Q ss_pred             cCCCceeeecCCC-eEEEEeC----------------CcEEEEEcCCCceEeeeccC----CCcEEEEEEcCC-CcEEEE
Q 010784          305 VPGVPVDMKCHES-MLYIASG----------------SSVVTIDLRTMQKVMTPAIC----KPILHSFSIMPS-KSLICT  362 (501)
Q Consensus       305 ~~~~~~~~~~~~~-~~~~~~~----------------~~i~~~d~~~~~~~~~~~~~----~~~v~~v~~~~~-~~~l~~  362 (501)
                      ....+..+...+. ..+....                +.++++|-.+.+.+...+-.    .-.+.++.|..| +.++++
T Consensus       713 l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vV  792 (1096)
T KOG1897|consen  713 LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVV  792 (1096)
T ss_pred             CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEE
Confidence            2223333333332 1221111                13667777766655433321    123555668877 778887


Q ss_pred             EcC----------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCccccccccc
Q 010784          363 GGI----------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLC  431 (501)
Q Consensus       363 ~~~----------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~  431 (501)
                      |..          .+ |.++.....+.+   +.+.+..- .+.+.++..-..+++|+  -...|++|+..+.+.++.-  
T Consensus       793 GT~~v~Pde~ep~~GRIivfe~~e~~~L---~~v~e~~v-~Gav~aL~~fngkllA~--In~~vrLye~t~~~eLr~e--  864 (1096)
T KOG1897|consen  793 GTGLVYPDENEPVNGRIIVFEFEELNSL---ELVAETVV-KGAVYALVEFNGKLLAG--INQSVRLYEWTTERELRIE--  864 (1096)
T ss_pred             EEEeeccCCCCcccceEEEEEEecCCce---eeeeeeee-ccceeehhhhCCeEEEe--cCcEEEEEEccccceehhh--
Confidence            762          24 888887773322   22333322 46677776666677776  5678999999988776665  


Q ss_pred             CCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          432 NYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       432 ~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                         ..+..++..+.....|..|++|.  -.+.|.+..+...+
T Consensus       865 ---~~~~~~~~aL~l~v~gdeI~VgD--lm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  865 ---CNISNPIIALDLQVKGDEIAVGD--LMRSITLLQYKGDE  901 (1096)
T ss_pred             ---hcccCCeEEEEEEecCcEEEEee--ccceEEEEEEeccC
Confidence               45677889999999999999997  55778777766555

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.05  E-value=0.0024  Score=56.37  Aligned_cols=203  Identities=14%  Similarity=0.070  Sum_probs=121.6

Q ss_pred             EEEEeecCCeEEEEEeCCCe-EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC------CcEEEEEcC-C
Q 010784          263 LMSVAGHKSFLLVTISKDSK-VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG------SSVVTIDLR-T  334 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~d~~-~  334 (501)
                      .++.+|.....++.+-.-|. ..+||.++++..............+. -.++.+...++....      +.|.+||.. +
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH-g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH-GVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC-EEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            45667766667777766554 67899998876543322111111111 012222333444322      379999999 7


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCC------------------c-EEEEecCCCCCCCCCCCcccc--cCccc
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIG------------------K-AMTWDIRRSQDAVKPQPMAEL--DGHVG  393 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d------------------~-i~iwd~~~~~~~~~~~~~~~~--~~h~~  393 (501)
                      .+.+..+..|.-....+.+.|||+.|+++-.+                  . +...|..+++.+    ....+  ..|..
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll----~q~~Lp~~~~~l  163 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL----EQVELPPDLHQL  163 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee----eeeecCcccccc
Confidence            78888898887777889999999777766421                  1 334455555433    11224  34677


Q ss_pred             CeEEEEecCC-eEEEEecCCCc-------EEEEeCCCcccccccccCC--CCCCCcceeeeEeeccccEEEEeecCCCce
Q 010784          394 SVTQLHMDPY-KIVTGGRDDLR-------INIWETDTGMLANSLLCNY--PEEADISTGCSAMAVSGCRIVTASYGEPGL  463 (501)
Q Consensus       394 ~v~~l~~~~~-~~l~~gs~dg~-------i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~  463 (501)
                      .|..|+++++ .++.+.-..|.       |-+++-  ++.+..+....  ...-...+-+++++.+|.++++.+. .-+.
T Consensus       164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP-rGg~  240 (305)
T PF07433_consen  164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP-RGGR  240 (305)
T ss_pred             ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC-CCCE
Confidence            8889999888 55555433332       333332  22222221110  0122467899999999999988775 6789


Q ss_pred             EEEeeccCCc
Q 010784          464 LQFRDFSNAT  473 (501)
Q Consensus       464 i~~w~~~~~~  473 (501)
                      +.+||..++.
T Consensus       241 ~~~~d~~tg~  250 (305)
T PF07433_consen  241 VAVWDAATGR  250 (305)
T ss_pred             EEEEECCCCC
Confidence            9999976654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.05  E-value=0.00072  Score=63.33  Aligned_cols=249  Identities=11%  Similarity=0.008  Sum_probs=125.5

Q ss_pred             ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc-------------------------------------cccc
Q 010784          208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG-------------------------------------QQAL  250 (501)
Q Consensus       208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-------------------------------------~~~~  250 (501)
                      .|+.+.|+    ++...|+.|...|.|.+|.....+...                                     -..+
T Consensus         3 ~v~~vs~a----~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P   78 (395)
T PF08596_consen    3 SVTHVSFA----PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLP   78 (395)
T ss_dssp             -EEEEEEE----TTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEE
T ss_pred             eEEEEEec----CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCc
Confidence            57888887    677788889999999998765432210                                     0112


Q ss_pred             eeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce---ecCCCceeeec-----CCC-----
Q 010784          251 KATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT---SVPGVPVDMKC-----HES-----  317 (501)
Q Consensus       251 ~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~-----  317 (501)
                      ...+....++|++++.+  +-.+++.|..+|.+.|.|+|....+.........   .....+.++.|     .++     
T Consensus        79 ~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   79 LTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             EEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             hhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            22334456889999987  4558999999999999999988766553322210   11111222222     122     


Q ss_pred             eEEEEeC-CcEEEEEcC--C-Cce----EeeeccCCCcEEEEE-EcCC---------------------CcEEEEEcCCc
Q 010784          318 MLYIASG-SSVVTIDLR--T-MQK----VMTPAICKPILHSFS-IMPS---------------------KSLICTGGIGK  367 (501)
Q Consensus       318 ~~~~~~~-~~i~~~d~~--~-~~~----~~~~~~~~~~v~~v~-~~~~---------------------~~~l~~~~~d~  367 (501)
                      .+++.+. +.+.+|.+-  . +..    ......+.++|..+. ++.+                     ..+++++++..
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~  236 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD  236 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred             EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence            2333333 466666553  1 111    111123456665554 3211                     12666666666


Q ss_pred             EEEEecCCCCCCCCCCCcccccCcccCeEEEEec-----CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcce
Q 010784          368 AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD-----PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIST  441 (501)
Q Consensus       368 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  441 (501)
                      +|++...+.+..      +...........+.+-     .. ..|++-..+|.|+++.+..-+.+..+.... ......+
T Consensus       237 irv~~~~~~k~~------~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~-~~d~~~~  309 (395)
T PF08596_consen  237 IRVFKPPKSKGA------HKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP-PLDSRRL  309 (395)
T ss_dssp             EEEE-TT---EE------EEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS----HHHH
T ss_pred             eEEEeCCCCccc------ceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCC-ccccccc
Confidence            999999886543      2222222223333332     23 666676799999999999988887775432 1123456


Q ss_pred             eeeEeeccccEEEEeecCCCceEEEeec
Q 010784          442 GCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       442 ~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      ...+++++|..++-.+..+-..+.+|.-
T Consensus       310 ~~ssis~~Gdi~~~~gpsE~~l~sv~~~  337 (395)
T PF08596_consen  310 SSSSISRNGDIFYWTGPSEIQLFSVWGE  337 (395)
T ss_dssp             TT-EE-TTS-EEEE-SSSEEEEEEEES-
T ss_pred             cccEECCCCCEEEEeCcccEEEEEEEcc
Confidence            6788999999888776433333444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.05  E-value=0.0055  Score=51.74  Aligned_cols=104  Identities=9%  Similarity=-0.102  Sum_probs=63.0

Q ss_pred             CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce
Q 010784          121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC  198 (501)
Q Consensus       121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~  198 (501)
                      -|.+++.|...|.+++-+.++| .....+..- +.|.+-+-..            +++..+..|+.|++.+.-|  +..+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~-~~vk~~a~~d------------~~~glIycgshd~~~yalD~~~~~c  127 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTG-SQIWNFVIL-ETVKVRAQCD------------FDGGLIYCGSHDGNFYALDPKTYGC  127 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecch-hheeeeeeh-hhhccceEEc------------CCCceEEEecCCCcEEEecccccce
Confidence            3667999999999999999987 333333221 2222222111            1789999999999999999  6667


Q ss_pred             eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCC
Q 010784          199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSS  242 (501)
Q Consensus       199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~  242 (501)
                      +...+...+...+-+.    ++....|+.+...|.|.--..+..
T Consensus       128 VykskcgG~~f~sP~i----~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  128 VYKSKCGGGTFVSPVI----APGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EEecccCCceecccee----cCCCceEEEEeccceEEEEccCCC
Confidence            7666543332222222    343344555555666655454443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.05  E-value=0.0013  Score=63.78  Aligned_cols=133  Identities=17%  Similarity=0.132  Sum_probs=90.7

Q ss_pred             CCcEEEEEcCC-----CceEeeeccCCCcEEEEEEcCCCcEEEEEcC-Cc-EEEEecCCCCCCCCC------CCcccccC
Q 010784          324 GSSVVTIDLRT-----MQKVMTPAICKPILHSFSIMPSKSLICTGGI-GK-AMTWDIRRSQDAVKP------QPMAELDG  390 (501)
Q Consensus       324 ~~~i~~~d~~~-----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~------~~~~~~~~  390 (501)
                      ++.|.++|.++     .+.+..+. -......+.++|||+++++++. +. +.++|+.+.+.....      ..+.+.+-
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            35688888887     33444444 3566788999999999988884 44 999999986542100      01112221


Q ss_pred             cccCeEEEEecCC-eEEEEecCCCcEEEEeCCC----------cccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          391 HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT----------GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       391 h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                       .......+|+++ ..+++-.-|..|..||+..          ...+..+..|...+|.....+=.-.|||++|++...
T Consensus       374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             -CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence             223345678888 8888888899999999976          345566666666677666666667889999998653

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=98.04  E-value=0.0037  Score=58.42  Aligned_cols=100  Identities=15%  Similarity=0.128  Sum_probs=69.3

Q ss_pred             ceEEeeCCcEEEeecCCeeeEEE---Eeccc----ccccceeccc---CC--cceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          114 DHILLDNNDIFSTQGSSIQNIKI---DNFLS----ESYYRATLSD---HK--ARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       114 ~~~~~~~~~~~~~~g~~d~~i~v---w~~~~----~~~~~~~~~~---h~--~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      .++++++++.++|.+..+..+.+   |+...    .........+   +.  +.|+++.+.|......  ....+|...+
T Consensus         5 ~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~--s~~~~dw~~I   82 (415)
T PF14655_consen    5 CSISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKR--STGGPDWTCI   82 (415)
T ss_pred             ceEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccc--cCCCCCcEEE
Confidence            35678899999999877776666   53311    1122222221   22  5899999888433221  2333577899


Q ss_pred             EEeeCCCceEEec-CCceeeeccCCCCceEEEEee
Q 010784          182 VTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDK  215 (501)
Q Consensus       182 ~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s  215 (501)
                      +.|..+|.|++|. +|..+..-.-|..+|..+.+.
T Consensus        83 ~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   83 AVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             EEEecccEEEEEeccchHHHHHhcCccceEEEEec
Confidence            9999999999998 888887777899999999875

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.03  E-value=0.0069  Score=54.61  Aligned_cols=235  Identities=12%  Similarity=0.117  Sum_probs=133.4

Q ss_pred             cCcEEEEeeCCCceEEecC---CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce--
Q 010784          177 TENVLVTSSCDHSIRLWWK---GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK--  251 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd~---~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--  251 (501)
                      .++.|+.|..+| +.+++.   .......  +...|..+...    ++-+.+++-+ |+.+.++++............  
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl----~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVL----PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEe----cccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence            578999999888 888873   2222222  33348888876    5555555544 599999999875531110000  


Q ss_pred             ------eeccCCCCceeEEE-EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784          252 ------ATLYGHEKPIKLMS-VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       252 ------~~~~~~~~~v~~l~-~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (501)
                            .........+...+ .....+...+.......|.+|.......... ........+..+..+.+.++.++++..
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~lp~~~~~i~~~~~~i~v~~~  156 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEISLPDPPSSIAFLGNKICVGTS  156 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-ceeEEEEcCCCcEEEEEeCCEEEEEeC
Confidence                  00112233444444 1112333344444456899988876421110 223344677889999999999999999


Q ss_pred             CcEEEEEcCCCceEeeeccC------------CCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcc
Q 010784          325 SSVVTIDLRTMQKVMTPAIC------------KPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHV  392 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~------------~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~  392 (501)
                      ....+.|+.++.....+...            ..++..+.. +++.+|++-.+ .-...|. .++..  .  -..+.- .
T Consensus       157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~-~g~fv~~-~G~~~--r--~~~i~W-~  228 (275)
T PF00780_consen  157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYDN-IGVFVNK-NGEPS--R--KSTIQW-S  228 (275)
T ss_pred             CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEecc-eEEEEcC-CCCcC--c--ccEEEc-C
Confidence            99999999977654433211            122333333 34566665322 2222333 33322  1  122222 2


Q ss_pred             cCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784          393 GSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       393 ~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                      ..+.++++....+++.  .++.|.||++.++++++++.
T Consensus       229 ~~p~~~~~~~pyli~~--~~~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  229 SAPQSVAYSSPYLIAF--SSNSIEVRSLETGELVQTIP  264 (275)
T ss_pred             CchhEEEEECCEEEEE--CCCEEEEEECcCCcEEEEEE
Confidence            3566777755555554  34569999999999998884

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.03  E-value=0.006  Score=58.05  Aligned_cols=210  Identities=12%  Similarity=0.046  Sum_probs=101.8

Q ss_pred             ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc-cceeeccCCCCceeEEEE
Q 010784          189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ-ALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~l~~  266 (501)
                      .|.||+ .|+.+..+.-..+.|.++.|.     +...|+.-..||.++++|+..... ... ..+....-....+....+
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt-----~~e~LvvV~~dG~v~vy~~~G~~~-fsl~~~i~~~~v~e~~i~~~~~  135 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWT-----DDEELVVVQSDGTVRVYDLFGEFQ-FSLGEEIEEEKVLECRIFAIWF  135 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEEC-----CCCeEEEEEcCCEEEEEeCCCcee-echhhhccccCccccccccccc
Confidence            599999 888887765444899999995     456677778999999999864320 000 001111111222222222


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCc-cccceeccccee----cCCC---ceeeecCCC-eEEEEeCCcEEEEEcCCCce
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSS-AVRSSCCVGMTS----VPGV---PVDMKCHES-MLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~~~----~~~~---~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~  337 (501)
                      . .+|-.+++  .++.+.+.+-.... ..+.........    ....   +..+..... .+.++.+..+.+.+-...+.
T Consensus       136 ~-~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~  212 (410)
T PF04841_consen  136 Y-KNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ  212 (410)
T ss_pred             C-CCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc
Confidence            2 13433333  33444443222211 101000000000    0000   001111111 12222334444444322211


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecCC-eEEEEecCCCc
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDPY-KIVTGGRDDLR  414 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~-~~l~~gs~dg~  414 (501)
                         +. ..+++..+++||+++++|.-.+++ +.+.+..-.+..      .++... ......+.|..+ .+++.  ....
T Consensus       213 ---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~------~e~~~~~~~~p~~~~WCG~dav~l~--~~~~  280 (410)
T PF04841_consen  213 ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL------CEFDTDSKSPPKQMAWCGNDAVVLS--WEDE  280 (410)
T ss_pred             ---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccccee------EEeecCcCCCCcEEEEECCCcEEEE--eCCE
Confidence               11 246899999999999999998877 888876544322      333322 345567777665 33333  2334


Q ss_pred             EEEEe
Q 010784          415 INIWE  419 (501)
Q Consensus       415 i~iwd  419 (501)
                      |.+..
T Consensus       281 l~lvg  285 (410)
T PF04841_consen  281 LLLVG  285 (410)
T ss_pred             EEEEC
Confidence            55554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.99  E-value=0.012  Score=57.83  Aligned_cols=273  Identities=11%  Similarity=0.001  Sum_probs=139.9

Q ss_pred             EeecCCeeeEEEEecccccccceecccCCccee-E-EEeeccCcCcccccCCCCcC-cEEEEeeCCCceEEec--CCcee
Q 010784          125 STQGSSIQNIKIDNFLSESYYRATLSDHKARIT-C-MRLFPLHETSLFRSEPQRTE-NVLVTSSCDHSIRLWW--KGSCQ  199 (501)
Q Consensus       125 ~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~-~-~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~vwd--~~~~~  199 (501)
                      +..++.++.+.-.|..+| +.+........... + ..+..         ...-.+ ..++.++.+|.|.-+|  +++.+
T Consensus        64 vy~~~~~g~l~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~---------g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~  133 (488)
T cd00216          64 MYFTTSHSALFALDAATG-KVLWRYDPKLPADRGCCDVVNR---------GVAYWDPRKVFFGTFDGRLVALDAETGKQV  133 (488)
T ss_pred             EEEeCCCCcEEEEECCCC-hhhceeCCCCCccccccccccC---------CcEEccCCeEEEecCCCeEEEEECCCCCEe
Confidence            334555688888899886 54444432221000 0 00000         000023 6788888899999998  77776


Q ss_pred             eeccCCCCc-----eE-EEEeeecCCCCCCEEEEee---------CCCcEEEEeccCCCccccccceeeccCC-C-----
Q 010784          200 RCFKGHNGP-----VS-TLSDKLLGDGSGKILASGG---------EDATVRLWSLSSSGKRGQQALKATLYGH-E-----  258 (501)
Q Consensus       200 ~~~~~h~~~-----v~-~l~~s~~~~~~~~~l~sg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~-----  258 (501)
                      -.+......     +. ...+      .+..++.++         .+|.+..+|..+++.      +-.+... .     
T Consensus       134 W~~~~~~~~~~~~~i~ssP~v------~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~------~W~~~~~~~~~~~~  201 (488)
T cd00216         134 WKFGNNDQVPPGYTMTGAPTI------VKKLVIIGSSGAEFFACGVRGALRAYDVETGKL------LWRFYTTEPDPNAF  201 (488)
T ss_pred             eeecCCCCcCcceEecCCCEE------ECCEEEEeccccccccCCCCcEEEEEECCCCce------eeEeeccCCCcCCC
Confidence            555432210     11 1122      123455554         367888999988875      2221110 0     


Q ss_pred             --------------Ccee-EEEEeecCCeEEEEEeCCC------------------eEEEEECCCCccccceecccce--
Q 010784          259 --------------KPIK-LMSVAGHKSFLLVTISKDS------------------KVRVWDTSTSSAVRSSCCVGMT--  303 (501)
Q Consensus       259 --------------~~v~-~l~~~~~~~~~l~s~s~dg------------------~v~vwd~~~~~~~~~~~~~~~~--  303 (501)
                                    ..|. ...+.+ .+..++.++.++                  .|.-+|..+++..-........  
T Consensus       202 ~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~  280 (488)
T cd00216         202 PTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLW  280 (488)
T ss_pred             CCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCc
Confidence                          0111 123332 344666676554                  7999999999876554322110  


Q ss_pred             --ecCCCce--eee-cCCC---eEEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE-----------
Q 010784          304 --SVPGVPV--DMK-CHES---MLYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG-----------  363 (501)
Q Consensus       304 --~~~~~~~--~~~-~~~~---~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-----------  363 (501)
                        .....+.  .+. .+..   .+++.+ .+.+..+|.++++.+......   ...++.+| +..++..           
T Consensus       281 ~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~  356 (488)
T cd00216         281 DYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQK  356 (488)
T ss_pred             ccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccc
Confidence              0011111  111 1111   123332 458999999999998765421   11123333 2222211           


Q ss_pred             ------cCCc-EEEEecCCCCCCCCCCCcccccCc--c------cCe--EEEEecCCeEEEEecCCCcEEEEeCCCcccc
Q 010784          364 ------GIGK-AMTWDIRRSQDAVKPQPMAELDGH--V------GSV--TQLHMDPYKIVTGGRDDLRINIWETDTGMLA  426 (501)
Q Consensus       364 ------~~d~-i~iwd~~~~~~~~~~~~~~~~~~h--~------~~v--~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~  426 (501)
                            ..++ +.-.|..+++.+      -+....  .      .+.  ..+.... .++..++.||.|+.+|..+|+.+
T Consensus       357 ~~~~~~~~~G~l~AlD~~tG~~~------W~~~~~~~~~~~~~g~~~~~~~~~~~g-~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         357 KKRCKKPGKGGLAALDPKTGKVV------WEKREGTIRDSWNIGFPHWGGSLATAG-NLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             cCCCCCCCceEEEEEeCCCCcEe------eEeeCCccccccccCCcccCcceEecC-CeEEEECCCCeEEEEECCCCcee
Confidence                  1234 778888887654      111110  0      111  1223333 34555569999999999999999


Q ss_pred             ccccc
Q 010784          427 NSLLC  431 (501)
Q Consensus       427 ~~~~~  431 (501)
                      -++..
T Consensus       430 W~~~~  434 (488)
T cd00216         430 WKFRT  434 (488)
T ss_pred             eEEEC
Confidence            88753

The alignment model contains an 8-bladed beta-propeller.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.99  E-value=0.017  Score=54.97  Aligned_cols=72  Identities=14%  Similarity=0.107  Sum_probs=60.0

Q ss_pred             cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeC
Q 010784          343 ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWET  420 (501)
Q Consensus       343 ~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~  420 (501)
                      ..+..+.+++++|+...++.|+.|+ |.+||...+.        ..+....-.++.++|+|+ .+++.|+..|.+.+||+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence            3578899999999999999999999 9999998753        223334556789999999 88888889999999998


Q ss_pred             CC
Q 010784          421 DT  422 (501)
Q Consensus       421 ~~  422 (501)
                      .-
T Consensus       329 AL  330 (545)
T PF11768_consen  329 AL  330 (545)
T ss_pred             ec
Confidence            53

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.96  E-value=0.0074  Score=59.16  Aligned_cols=272  Identities=11%  Similarity=0.095  Sum_probs=145.8

Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccCCCC------ceE--EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNG------PVS--TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ  247 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~------~v~--~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  247 (501)
                      +..++.++.++.|.-.|  +++.+-.+.....      .+.  .+..     .++..++.++.+|.|..+|.++++.   
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-----~~~~~V~v~~~~g~v~AlD~~TG~~---  132 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-----WDPRKVFFGTFDGRLVALDAETGKQ---  132 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-----ccCCeEEEecCCCeEEEEECCCCCE---
Confidence            45666677788888888  6666544432221      110  1111     1226788888999999999999874   


Q ss_pred             ccceeeccCCCC-----cee-EEEEeecCCeEEEEEe---------CCCeEEEEECCCCccccceecccce--ecC----
Q 010784          248 QALKATLYGHEK-----PIK-LMSVAGHKSFLLVTIS---------KDSKVRVWDTSTSSAVRSSCCVGMT--SVP----  306 (501)
Q Consensus       248 ~~~~~~~~~~~~-----~v~-~l~~~~~~~~~l~s~s---------~dg~v~vwd~~~~~~~~~~~~~~~~--~~~----  306 (501)
                         +-.......     .+. ...+.  ++ .++.++         .++.+..+|..+++.+-........  ...    
T Consensus       133 ---~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~  206 (488)
T cd00216         133 ---VWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGP  206 (488)
T ss_pred             ---eeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCC
Confidence               322221111     011 11222  23 444443         3688999999999876544332110  000    


Q ss_pred             ---------CCc---eeeecCCCeEEEEeCC-------------------cEEEEEcCCCceEeeeccCCCcE------E
Q 010784          307 ---------GVP---VDMKCHESMLYIASGS-------------------SVVTIDLRTMQKVMTPAICKPIL------H  349 (501)
Q Consensus       307 ---------~~~---~~~~~~~~~~~~~~~~-------------------~i~~~d~~~~~~~~~~~~~~~~v------~  349 (501)
                               ..+   ..+......+++.+++                   .+.-+|..+++....++.-....      .
T Consensus       207 ~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s  286 (488)
T cd00216         207 DRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPN  286 (488)
T ss_pred             CcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCC
Confidence                     000   1112234556666532                   58899999999987765311111      0


Q ss_pred             EEEEc----CCCc---EEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEE-------------
Q 010784          350 SFSIM----PSKS---LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTG-------------  408 (501)
Q Consensus       350 ~v~~~----~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~-------------  408 (501)
                      ...+.    -++.   .++.++.++ +...|.++++.+      -.....   ...++.+|+.+++.             
T Consensus       287 ~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~------W~~~~~---~~~~~~~~~~vyv~~~~~~~~~~~~~~  357 (488)
T cd00216         287 QPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLI------SARPEV---EQPMAYDPGLVYLGAFHIPLGLPPQKK  357 (488)
T ss_pred             CCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEe------eEeEee---ccccccCCceEEEccccccccCccccc
Confidence            00111    1333   577777777 999999998765      221110   11233444433332             


Q ss_pred             ----ecCCCcEEEEeCCCcccccccccCCCCCC---CcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          409 ----GRDDLRINIWETDTGMLANSLLCNYPEEA---DISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       409 ----gs~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                          ...+|.+.-.|..+|+.+-+.........   ......-.....+..|+.++  .+|.|+.+|..+++.
T Consensus       358 ~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~--~dG~l~ald~~tG~~  428 (488)
T cd00216         358 KRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGA--ADGYFRAFDATTGKE  428 (488)
T ss_pred             CCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEEC--CCCeEEEEECCCCce
Confidence                12467898999999987766642210000   01111111223567888887  569999888766653

The alignment model contains an 8-bladed beta-propeller.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.91  E-value=7.8e-05  Score=70.05  Aligned_cols=76  Identities=18%  Similarity=0.213  Sum_probs=60.9

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE  230 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~  230 (501)
                      ..+..|.|++++|             +...|+.|+.||+|.+||....+..+....-..+.++|+    |+|.++++|+.
T Consensus       257 pL~s~v~~ca~sp-------------~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWH----p~gai~~V~s~  319 (545)
T PF11768_consen  257 PLPSQVICCARSP-------------SEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWH----PDGAIFVVGSE  319 (545)
T ss_pred             ecCCcceEEecCc-------------ccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEc----CCCcEEEEEcC
Confidence            3455666666666             899999999999999999444444444455667899998    89999999999


Q ss_pred             CCcEEEEeccCCC
Q 010784          231 DATVRLWSLSSSG  243 (501)
Q Consensus       231 dg~i~iwd~~~~~  243 (501)
                      .|.+.+||+.-..
T Consensus       320 qGelQ~FD~ALsp  332 (545)
T PF11768_consen  320 QGELQCFDMALSP  332 (545)
T ss_pred             CceEEEEEeecCc
Confidence            9999999987654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.88  E-value=0.013  Score=51.04  Aligned_cols=207  Identities=12%  Similarity=0.087  Sum_probs=103.7

Q ss_pred             eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCC-CCceEEEEeeecCCCCCCE
Q 010784          147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGH-NGPVSTLSDKLLGDGSGKI  224 (501)
Q Consensus       147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h-~~~v~~l~~s~~~~~~~~~  224 (501)
                      +.+.+-...+..|+|.|+            ++.++++....+.|...+ .|+.++.+.-. .+..-.+++.    .++.+
T Consensus        15 ~~l~g~~~e~SGLTy~pd------------~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~----g~~~~   78 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPD------------TGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL----GNGRY   78 (248)
T ss_dssp             EE-TT--S-EEEEEEETT------------TTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-----STTEE
T ss_pred             eECCCccCCccccEEcCC------------CCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE----CCCEE
Confidence            345555667999999994            456777777788887777 77777766433 3566778875    56666


Q ss_pred             EEEeeCCCcEEEEeccCCCccccccceee-----ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC---Cccccc
Q 010784          225 LASGGEDATVRLWSLSSSGKRGQQALKAT-----LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST---SSAVRS  296 (501)
Q Consensus       225 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~---~~~~~~  296 (501)
                      +++--.++.+.++++..............     ...++..+-.++|.+.... |+.+-......+|.+..   ......
T Consensus        79 vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~~~~~  157 (248)
T PF06977_consen   79 VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGFDLFV  157 (248)
T ss_dssp             EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS--EE
T ss_pred             EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCccceee
Confidence            66655689999999854332111111111     1235667899999985454 44555666666776654   111110


Q ss_pred             eeccc---ceecCCCceeee--cCCCeEEEEeCC--cEEEEEcCCCceEeeeccCC---------CcEEEEEEcCCCcEE
Q 010784          297 SCCVG---MTSVPGVPVDMK--CHESMLYIASGS--SVVTIDLRTMQKVMTPAICK---------PILHSFSIMPSKSLI  360 (501)
Q Consensus       297 ~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~l  360 (501)
                      .....   .......+..+.  ...+.+++.++.  .+..+| .+++.+..+.-..         .....|+|.++|++.
T Consensus       158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY  236 (248)
T PF06977_consen  158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY  236 (248)
T ss_dssp             EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred             ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence            00000   001111223333  334456666653  677777 6666654443222         357899999999877


Q ss_pred             EEEcCCcEEEE
Q 010784          361 CTGGIGKAMTW  371 (501)
Q Consensus       361 ~~~~~d~i~iw  371 (501)
                      +++--+-.+++
T Consensus       237 IvsEpNlfy~f  247 (248)
T PF06977_consen  237 IVSEPNLFYRF  247 (248)
T ss_dssp             EEETTTEEEEE
T ss_pred             EEcCCceEEEe
Confidence            77654334443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.83  E-value=0.0011  Score=48.53  Aligned_cols=104  Identities=11%  Similarity=0.047  Sum_probs=70.6

Q ss_pred             CceEEee---C-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          113 HDHILLD---N-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       113 i~~~~~~---~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      |++|++.   . ...-|+.|+.|..|++|+-+   ..+..+.. .+.|+++.-..              +..|+.+..+|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~--------------~~~F~Y~l~NG   63 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLG--------------GGRFAYALANG   63 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcC--------------CCEEEEEecCC
Confidence            4566654   2 33788999999999999954   44444443 46688887775              47899999999


Q ss_pred             ceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEE
Q 010784          189 SIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVR  235 (501)
Q Consensus       189 ~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~  235 (501)
                      +|-+|+....+-..+. +..+.++.+.-.....-..|++|-.+|.|-
T Consensus        64 TVGvY~~~~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   64 TVGVYDRSQRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEEeCcceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9999995544444443 334777776511111123688888888874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.82  E-value=0.0017  Score=63.72  Aligned_cols=109  Identities=14%  Similarity=0.078  Sum_probs=78.9

Q ss_pred             CceEEeeCCcEEEeecCC----eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          113 HDHILLDNNDIFSTQGSS----IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~----d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      .+-..|+|...++|.++.    .|.+.|+--. | ++.+... -+-.+++++|+|             ..-.|+.|-.-|
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfadt-G-EPqr~Vt-~P~hatSLCWHp-------------e~~vLa~gwe~g   81 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFADT-G-EPQRDVT-YPVHATSLCWHP-------------EEFVLAQGWEMG   81 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEecC-C-CCCcccc-cceehhhhccCh-------------HHHHHhhccccc
Confidence            445567788888776653    5777777533 2 3222221 122356799999             677888888899


Q ss_pred             ceEEec-CCcee-eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC
Q 010784          189 SIRLWW-KGSCQ-RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS  241 (501)
Q Consensus       189 ~i~vwd-~~~~~-~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~  241 (501)
                      .+.+|+ ..+.. .....|..+|..+.||    ++|..++++..-|.|.+|..+.
T Consensus        82 ~~~v~~~~~~e~htv~~th~a~i~~l~wS----~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   82 VSDVQKTNTTETHTVVETHPAPIQGLDWS----HDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eeEEEecCCceeeeeccCCCCCceeEEec----CCCCeEEEcCCCceeEEEEeee
Confidence            999998 32333 3345699999999998    8999999999999999998874

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.0097  Score=53.73  Aligned_cols=221  Identities=10%  Similarity=0.005  Sum_probs=116.1

Q ss_pred             CCCC-EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784          220 GSGK-ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC  298 (501)
Q Consensus       220 ~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  298 (501)
                      ++.. ++.+--..+.|.-|+..++..       ..+. +.+.+.++.... .+..|+++..  .+.+++.+++.......
T Consensus        34 ~~~~~L~w~DI~~~~i~r~~~~~g~~-------~~~~-~p~~~~~~~~~d-~~g~Lv~~~~--g~~~~~~~~~~~~t~~~  102 (307)
T COG3386          34 PDRGALLWVDILGGRIHRLDPETGKK-------RVFP-SPGGFSSGALID-AGGRLIACEH--GVRLLDPDTGGKITLLA  102 (307)
T ss_pred             CCCCEEEEEeCCCCeEEEecCCcCce-------EEEE-CCCCcccceeec-CCCeEEEEcc--ccEEEeccCCceeEEec
Confidence            3444 555666778888898887642       3333 233334444442 4445555443  35666765544321111


Q ss_pred             cccceecCCCceeeecCCCeEEEEe--C-----C-----cEEEEEcC-CCceEeeeccCCCcEEEEEEcCCCcEEEEEcC
Q 010784          299 CVGMTSVPGVPVDMKCHESMLYIAS--G-----S-----SVVTIDLR-TMQKVMTPAICKPILHSFSIMPSKSLICTGGI  365 (501)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~-----~i~~~d~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  365 (501)
                      .................+++.+...  +     .     .-.+|.+. .+..+..+..+-..-+.++||||++.+..+..
T Consensus       103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence            1111111112222222222222211  1     0     11344444 45555555555556678999999977777764


Q ss_pred             C-c-EEEEecCC--CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC-cEEEEeCCCcccccccccCCCCCCCc
Q 010784          366 G-K-AMTWDIRR--SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL-RINIWETDTGMLANSLLCNYPEEADI  439 (501)
Q Consensus       366 d-~-i~iwd~~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~  439 (501)
                      . + |.-|++..  +... .......+....+..-.++.+.+ .+.+++-.+| .|.+|+.. |+++..+..     +..
T Consensus       183 ~~~~i~r~~~d~~~g~~~-~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l-----P~~  255 (307)
T COG3386         183 PANRIHRYDLDPATGPIG-GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL-----PVK  255 (307)
T ss_pred             CCCeEEEEecCcccCccC-CcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC-----CCC
Confidence            3 4 88777763  2111 01111222233456667778887 6664443444 89999988 999888843     335


Q ss_pred             ceeeeEee-ccccEEEEeec
Q 010784          440 STGCSAMA-VSGCRIVTASY  458 (501)
Q Consensus       440 ~v~~~~~s-~~g~~l~s~~~  458 (501)
                      .+++++|- ++.+.|+..+.
T Consensus       256 ~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         256 RPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCccceEeCCCcCEEEEEec
Confidence            67788886 45566555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.78  E-value=0.0048  Score=58.77  Aligned_cols=226  Identities=8%  Similarity=-0.004  Sum_probs=114.7

Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRV  285 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~v  285 (501)
                      .-....+.++    |+|++++.+ .||...++......        ...   .+.-....|.+  .+.+++-...+.|.+
T Consensus        32 ~~~p~~ls~n----pngr~v~V~-g~geY~iyt~~~~r--------~k~---~G~g~~~vw~~--~n~yAv~~~~~~I~I   93 (443)
T PF04053_consen   32 EIYPQSLSHN----PNGRFVLVC-GDGEYEIYTALAWR--------NKA---FGSGLSFVWSS--RNRYAVLESSSTIKI   93 (443)
T ss_dssp             SS--SEEEE-----TTSSEEEEE-ETTEEEEEETTTTE--------EEE---EEE-SEEEE-T--SSEEEEE-TTS-EEE
T ss_pred             CcCCeeEEEC----CCCCEEEEE-cCCEEEEEEccCCc--------ccc---cCceeEEEEec--CccEEEEECCCeEEE
Confidence            3346778885    889998884 57788888743322        111   23334567875  345777777888999


Q ss_pred             EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC
Q 010784          286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI  365 (501)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  365 (501)
                      +.--+......      ...+..+..+-. +..+.+...+.|.+||..+++.+..+...  .|..+.|+++|++++..++
T Consensus        94 ~kn~~~~~~k~------i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen   94 YKNFKNEVVKS------IKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             EETTEE-TT-----------SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S
T ss_pred             EEcCccccceE------EcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC
Confidence            63222211111      111211222222 55555555567999999999999988743  4899999999999999998


Q ss_pred             CcEEEEecCCCCC----C-CCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784          366 GKAMTWDIRRSQD----A-VKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIS  440 (501)
Q Consensus       366 d~i~iwd~~~~~~----~-~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  440 (501)
                      +.+.|++......    . .-...+..+..-...|.+.+|..+-++.+. .. .++.+=-.....+..+        ..+
T Consensus       165 ~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT-~~-~lkYl~~Ge~~~i~~l--------d~~  234 (443)
T PF04053_consen  165 DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTT-SN-HLKYLVNGETGIIAHL--------DKP  234 (443)
T ss_dssp             -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE--TT-EEEEEETTEEEEEEE---------SS-
T ss_pred             CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEc-CC-eEEEEEcCCcceEEEc--------CCc
Confidence            8877776554200    0 000011222222457888889888444442 33 6777432222334444        345


Q ss_pred             eeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          441 TGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       441 v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +.-+...+..+.+....  .++.|..+.+.
T Consensus       235 ~yllgy~~~~~~ly~~D--r~~~v~~~~ld  262 (443)
T PF04053_consen  235 LYLLGYLPKENRLYLID--RDGNVISYELD  262 (443)
T ss_dssp             -EEEEEETTTTEEEEE---TT--EEEEE--
T ss_pred             eEEEEEEccCCEEEEEE--CCCCEEEEEEC
Confidence            66677777667777766  55777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.77  E-value=0.0068  Score=54.30  Aligned_cols=260  Identities=8%  Similarity=0.067  Sum_probs=132.7

Q ss_pred             eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee----------CCCceEEec--CCcee
Q 010784          132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS----------CDHSIRLWW--KGSCQ  199 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd--~~~~~  199 (501)
                      +.+.|.|..++ +.+-.+..  +-.-.+..+|             +++.+.+++          ..-.|.+||  +-...
T Consensus        17 ~rv~viD~d~~-k~lGmi~~--g~~~~~~~sp-------------dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~   80 (342)
T PF06433_consen   17 SRVYVIDADSG-KLLGMIDT--GFLGNVALSP-------------DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT   80 (342)
T ss_dssp             EEEEEEETTTT-EEEEEEEE--ESSEEEEE-T-------------TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred             ceEEEEECCCC-cEEEEeec--ccCCceeECC-------------CCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence            57888888774 54444432  1222355677             778777643          344688999  33323


Q ss_pred             ee--ccC-CCCc----eEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784          200 RC--FKG-HNGP----VSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK  270 (501)
Q Consensus       200 ~~--~~~-h~~~----v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  270 (501)
                      ..  +.. |...    ...++++    .++++++....  -.+|.|-|+...+      .+..+. -.+   |.-.-|..
T Consensus        81 ~EI~iP~k~R~~~~~~~~~~~ls----~dgk~~~V~N~TPa~SVtVVDl~~~k------vv~ei~-~PG---C~~iyP~~  146 (342)
T PF06433_consen   81 GEIEIPPKPRAQVVPYKNMFALS----ADGKFLYVQNFTPATSVTVVDLAAKK------VVGEID-TPG---CWLIYPSG  146 (342)
T ss_dssp             EEEEETTS-B--BS--GGGEEE-----TTSSEEEEEEESSSEEEEEEETTTTE------EEEEEE-GTS---EEEEEEEE
T ss_pred             ceEecCCcchheecccccceEEc----cCCcEEEEEccCCCCeEEEEECCCCc------eeeeec-CCC---EEEEEecC
Confidence            22  221 1111    1122332    45555544322  2345566665543      233222 111   22333444


Q ss_pred             CeEEEEEeCCCeEEEEECC-CCccccceecccceecCCC-ceee---ecCCC-eEEEEeCCcEEEEEcCCCceE--eeec
Q 010784          271 SFLLVTISKDSKVRVWDTS-TSSAVRSSCCVGMTSVPGV-PVDM---KCHES-MLYIASGSSVVTIDLRTMQKV--MTPA  342 (501)
Q Consensus       271 ~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~-~~~~~~~~~i~~~d~~~~~~~--~~~~  342 (501)
                      +..|.+-+.||.+....+. .++......  ..+..... ++.-   ..... ..++.-.+.++..|+......  ..+.
T Consensus       147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t--~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~  224 (342)
T PF06433_consen  147 NRGFSMLCGDGSLLTVTLDADGKEAQKST--KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS  224 (342)
T ss_dssp             TTEEEEEETTSCEEEEEETSTSSEEEEEE--EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred             CCceEEEecCCceEEEEECCCCCEeEeec--cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence            4568888999999999888 444432111  11111111 1111   12222 344455677887777655432  1111


Q ss_pred             cC----------CCcEEEEEEcCCCcEEEEEc--------CC--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec
Q 010784          343 IC----------KPILHSFSIMPSKSLICTGG--------IG--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD  401 (501)
Q Consensus       343 ~~----------~~~v~~v~~~~~~~~l~~~~--------~d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  401 (501)
                      .-          .+.-.-+++++....|.+..        .+  . |-++|+.+.+.+      ..+.. ..++.+|.++
T Consensus       225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv------~Ri~l-~~~~~Si~Vs  297 (342)
T PF06433_consen  225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV------ARIPL-EHPIDSIAVS  297 (342)
T ss_dssp             SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE------EEEEE-EEEESEEEEE
T ss_pred             ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE------EEEeC-CCccceEEEc
Confidence            00          12223466776544443322        12  3 788888887654      55553 3567899998


Q ss_pred             CC--eEE-EEecCCCcEEEEeCCCcccccccc
Q 010784          402 PY--KIV-TGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       402 ~~--~~l-~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                      .+  .+| +....++.+.+||..+|+.++++.
T Consensus       298 qd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  298 QDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             SSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             cCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            87  444 444568999999999999999884

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.76  E-value=0.0018  Score=47.46  Aligned_cols=105  Identities=20%  Similarity=0.207  Sum_probs=72.0

Q ss_pred             eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEE
Q 010784          156 ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVR  235 (501)
Q Consensus       156 V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~  235 (501)
                      |++|++......         ..+.|+.|+.|..|++|+....+..+.. .+.|+++.-.     .+..++.+..+|+|-
T Consensus         2 V~al~~~d~d~d---------g~~eLlvGs~D~~IRvf~~~e~~~Ei~e-~~~v~~L~~~-----~~~~F~Y~l~NGTVG   66 (111)
T PF14783_consen    2 VTALCLFDFDGD---------GENELLVGSDDFEIRVFKGDEIVAEITE-TDKVTSLCSL-----GGGRFAYALANGTVG   66 (111)
T ss_pred             eeEEEEEecCCC---------CcceEEEecCCcEEEEEeCCcEEEEEec-ccceEEEEEc-----CCCEEEEEecCCEEE
Confidence            667777653110         1378999999999999997778877764 4567777753     447899999999999


Q ss_pred             EEeccCCCccccccceeeccCCCCceeEEEEeecC---CeEEEEEeCCCeEE
Q 010784          236 LWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK---SFLLVTISKDSKVR  284 (501)
Q Consensus       236 iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~~l~s~s~dg~v~  284 (501)
                      +|+-...        +-..+.... +.++.+..-+   ...|++|-.+|.|-
T Consensus        67 vY~~~~R--------lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   67 VYDRSQR--------LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEeCcce--------eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9987542        333443333 5566554322   34788888888774

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.74  E-value=0.019  Score=51.54  Aligned_cols=243  Identities=13%  Similarity=0.050  Sum_probs=128.8

Q ss_pred             CceEEeeCCcEEEeecCC----------eeeEEEEecccccccceecc---cCCcc----eeEEEeeccCcCcccccCCC
Q 010784          113 HDHILLDNNDIFSTQGSS----------IQNIKIDNFLSESYYRATLS---DHKAR----ITCMRLFPLHETSLFRSEPQ  175 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~----------d~~i~vw~~~~~~~~~~~~~---~h~~~----V~~~~~~~~~~~~~~~~~~~  175 (501)
                      ...+.++|+++.+.+.+.          .-.|.+||..+- .+...+.   +|...    .+.++++.            
T Consensus        38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~------------  104 (342)
T PF06433_consen   38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSA------------  104 (342)
T ss_dssp             SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-T------------
T ss_pred             CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCCcchheecccccceEEcc------------
Confidence            556788999998887544          567899998873 3333221   11111    11223333            


Q ss_pred             CcCcEEEEeeC--CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce
Q 010784          176 RTENVLVTSSC--DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK  251 (501)
Q Consensus       176 ~~~~~l~s~~~--dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  251 (501)
                       ++++++....  ...|.|-|  .++.+..+.-  ..+ .+.+ |.  . ..-+.+-+.||.+....++...+.. .+..
T Consensus       105 -dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC-~~iy-P~--~-~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t  175 (342)
T PF06433_consen  105 -DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGC-WLIY-PS--G-NRGFSMLCGDGSLLTVTLDADGKEA-QKST  175 (342)
T ss_dssp             -TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSE-EEEE-EE--E-TTEEEEEETTSCEEEEEETSTSSEE-EEEE
T ss_pred             -CCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCE-EEEE-ec--C-CCceEEEecCCceEEEEECCCCCEe-Eeec
Confidence             4444443322  23344444  2333333221  111 1122 22  2 2457788889999999998655422 1122


Q ss_pred             eeccCCCCcee-EEEEeecCCeEEEEEeCCCeEEEEECCCCccccc--eecccc-------eecCCCceeeecCCCeEEE
Q 010784          252 ATLYGHEKPIK-LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS--SCCVGM-------TSVPGVPVDMKCHESMLYI  321 (501)
Q Consensus       252 ~~~~~~~~~v~-~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~  321 (501)
                      ..+..-..++. .-.+.. .+..++--+.+|.|+--|+........  ......       ..-.-..+.+....+.+++
T Consensus       176 ~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  176 KVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             cccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence            23333333332 223332 444566678999999988876653211  111100       0122234555555566665


Q ss_pred             EeC-----------CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc-EEEEE-cCCc-EEEEecCCCCCC
Q 010784          322 ASG-----------SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS-LICTG-GIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       322 ~~~-----------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~-~~d~-i~iwd~~~~~~~  379 (501)
                      ...           ..|-++|+.+++.+..+.. ..++.+|..+.+.+ +|++. ..++ +.+||..+++.+
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            531           1688899999999988875 35677999998865 55444 3456 999999998754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.74  E-value=0.007  Score=56.86  Aligned_cols=244  Identities=13%  Similarity=0.144  Sum_probs=122.2

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEeccccc------------------------------------------ccceec
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSES------------------------------------------YYRATL  149 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~------------------------------------------~~~~~~  149 (501)
                      .|+++.+.++..=++.|...|.|.||.+....                                          .+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            36778888887777778777888888764321                                          111122


Q ss_pred             ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCcee-ee--cc------CCCCceEEEEeeecC-
Q 010784          150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQ-RC--FK------GHNGPVSTLSDKLLG-  218 (501)
Q Consensus       150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~-~~--~~------~h~~~v~~l~~s~~~-  218 (501)
                      ....++|++++.|              |=.+++.|..+|.+.|.| .|..+ ..  +.      .....|+++.|.... 
T Consensus        83 ~~~~g~vtal~~S--------------~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~  148 (395)
T PF08596_consen   83 DAKQGPVTALKNS--------------DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL  148 (395)
T ss_dssp             ---S-SEEEEEE---------------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred             eccCCcEeEEecC--------------CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec
Confidence            2235778888876              457999999999999999 43322 11  11      234568889887422 


Q ss_pred             CCCC---CEEEEeeCCCcEEEEeccC-CCccccccceeeccCCCCceeEEEEeecC---------------------CeE
Q 010784          219 DGSG---KILASGGEDATVRLWSLSS-SGKRGQQALKATLYGHEKPIKLMSVAGHK---------------------SFL  273 (501)
Q Consensus       219 ~~~~---~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------------------~~~  273 (501)
                      ..|+   -.+++|...|.+.+|.+.- ...............+.++|..|.....+                     ..+
T Consensus       149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~  228 (395)
T PF08596_consen  149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY  228 (395)
T ss_dssp             TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred             CCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence            1222   4788999999999998863 22111122222223456666655533111                     124


Q ss_pred             EEEEeCCCeEEEEECCCCccccceecccceecCC-Cceeee--cCCC-eEEEEeCCcEEEEEcCCCceEeeeccCC----
Q 010784          274 LVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG-VPVDMK--CHES-MLYIASGSSVVTIDLRTMQKVMTPAICK----  345 (501)
Q Consensus       274 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~----  345 (501)
                      ++++ .+..++++...+.+...... .......+ ......  .... ...+...+.++++.+...+.+..+....    
T Consensus       229 vVvv-Se~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~  306 (395)
T PF08596_consen  229 VVVV-SESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS  306 (395)
T ss_dssp             EEEE--SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred             EEEE-cccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence            4444 45779999988765433221 11010000 010000  1111 2223345699999999988887766532    


Q ss_pred             CcEEEEEEcCCCcEEEEEcCCcEEEE
Q 010784          346 PILHSFSIMPSKSLICTGGIGKAMTW  371 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~~d~i~iw  371 (501)
                      ..+....++++|..++-.+...+.++
T Consensus       307 ~~~~~ssis~~Gdi~~~~gpsE~~l~  332 (395)
T PF08596_consen  307 RRLSSSSISRNGDIFYWTGPSEIQLF  332 (395)
T ss_dssp             HHHTT-EE-TTS-EEEE-SSSEEEEE
T ss_pred             ccccccEECCCCCEEEEeCcccEEEE
Confidence            23445677889998887775553333

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.71  E-value=0.019  Score=49.99  Aligned_cols=219  Identities=14%  Similarity=0.127  Sum_probs=110.8

Q ss_pred             eeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccccccceeeccCC-CCceeEEEEeecCCeEEEEE
Q 010784          200 RCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-EKPIKLMSVAGHKSFLLVTI  277 (501)
Q Consensus       200 ~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~  277 (501)
                      +.+.+-...++.++|.    ++ +.++++....+.|...+.+ ++      .+..+.-. .+..-.|++.. ++.++++.
T Consensus        15 ~~l~g~~~e~SGLTy~----pd~~tLfaV~d~~~~i~els~~-G~------vlr~i~l~g~~D~EgI~y~g-~~~~vl~~   82 (248)
T PF06977_consen   15 KPLPGILDELSGLTYN----PDTGTLFAVQDEPGEIYELSLD-GK------VLRRIPLDGFGDYEGITYLG-NGRYVLSE   82 (248)
T ss_dssp             EE-TT--S-EEEEEEE----TTTTEEEEEETTTTEEEEEETT---------EEEEEE-SS-SSEEEEEE-S-TTEEEEEE
T ss_pred             eECCCccCCccccEEc----CCCCeEEEEECCCCEEEEEcCC-CC------EEEEEeCCCCCCceeEEEEC-CCEEEEEE
Confidence            3455666679999997    54 5567777778888777764 33      34443222 34567888873 66666655


Q ss_pred             eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784          278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK  357 (501)
Q Consensus       278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~  357 (501)
                      -.++.+.++++............                           .-+.+      .....++..+..++|++.+
T Consensus        83 Er~~~L~~~~~~~~~~~~~~~~~---------------------------~~~~l------~~~~~~N~G~EGla~D~~~  129 (248)
T PF06977_consen   83 ERDQRLYIFTIDDDTTSLDRADV---------------------------QKISL------GFPNKGNKGFEGLAYDPKT  129 (248)
T ss_dssp             TTTTEEEEEEE----TT--EEEE---------------------------EEEE---------S---SS--EEEEEETTT
T ss_pred             cCCCcEEEEEEeccccccchhhc---------------------------eEEec------ccccCCCcceEEEEEcCCC
Confidence            56899999988543211100000                           00000      0011245668999999987


Q ss_pred             cEEEEEcCCc-EEEEecCC--C-CCCCC--CCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCccccccc
Q 010784          358 SLICTGGIGK-AMTWDIRR--S-QDAVK--PQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSL  429 (501)
Q Consensus       358 ~~l~~~~~d~-i~iwd~~~--~-~~~~~--~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~  429 (501)
                      +.|+.+-+.. ..+|.+..  . .....  ...+.........+.+++++|.  .+++-+.....|..+| .+|+.+..+
T Consensus       130 ~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~  208 (248)
T PF06977_consen  130 NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL  208 (248)
T ss_dssp             TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred             CEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence            7777777666 77777664  1 11000  0000111122345788999998  6777767899999999 667776655


Q ss_pred             ccCCCC----CCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784          430 LCNYPE----EADISTGCSAMAVSGCRIVTASYGEPGLLQFR  467 (501)
Q Consensus       430 ~~~~~~----~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w  467 (501)
                      ......    ..-..--+++|.++|++.+++   +.+.++++
T Consensus       209 ~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs---EpNlfy~f  247 (248)
T PF06977_consen  209 SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS---EPNLFYRF  247 (248)
T ss_dssp             E-STTGGG-SS---SEEEEEE-TT--EEEEE---TTTEEEEE
T ss_pred             EeCCcccCcccccCCccEEEECCCCCEEEEc---CCceEEEe
Confidence            432210    011235689999999777765   55665554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.69  E-value=0.022  Score=53.43  Aligned_cols=294  Identities=11%  Similarity=0.043  Sum_probs=140.5

Q ss_pred             eCCcEEEeecC---------CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784          119 DNNDIFSTQGS---------SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS  189 (501)
Q Consensus       119 ~~~~~~~~~g~---------~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  189 (501)
                      |||+++++...         ..+.+.|+|+.++ +. ..+......+....|+|             +|+.++... ++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~-~~-~~l~~~~~~~~~~~~sP-------------~g~~~~~v~-~~n   64 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG-EI-TPLTPPPPKLQDAKWSP-------------DGKYIAFVR-DNN   64 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT-EE-EESS-EETTBSEEEE-S-------------SSTEEEEEE-TTE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCC-ce-EECcCCccccccceeec-------------CCCeeEEEe-cCc
Confidence            45555555532         2578889999974 33 33333367789999999             788888876 678


Q ss_pred             eEEec-CCceeeecc--CC----------------CCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCcccccc
Q 010784          190 IRLWW-KGSCQRCFK--GH----------------NGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQA  249 (501)
Q Consensus       190 i~vwd-~~~~~~~~~--~h----------------~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~  249 (501)
                      |.+++ .......+.  +-                -+.-..+-||    |++++|+.... +..|+.+.+......    
T Consensus        65 ly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WS----pd~~~la~~~~d~~~v~~~~~~~~~~~----  136 (353)
T PF00930_consen   65 LYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWS----PDSKYLAFLRFDEREVPEYPLPDYSPP----  136 (353)
T ss_dssp             EEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-----TTSSEEEEEEEE-TTS-EEEEEEESSS----
T ss_pred             eEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEEC----CCCCEEEEEEECCcCCceEEeeccCCc----
Confidence            88887 222222221  10                1122457786    78888776543 344444443221110    


Q ss_pred             ceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE--EEEe-CC-
Q 010784          250 LKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML--YIAS-GS-  325 (501)
Q Consensus       250 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~-  325 (501)
                       ..    ..-.+..+.+- .-|.--.    .-.+.++|+.+++...................+.+.++..  ++.. .. 
T Consensus       137 -~~----~yp~~~~~~YP-k~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~  206 (353)
T PF00930_consen  137 -DS----QYPEVESIRYP-KAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD  206 (353)
T ss_dssp             -TE----SS-EEEEEE---BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT
T ss_pred             -cc----cCCcccccccC-CCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC
Confidence             00    01123334432 1111111    1236678887775431110100011223334455544433  2222 11 


Q ss_pred             ----cEEEEEcCCCceEeeecc-CCCcE---EEEEEc-CCCc-EEEEEcCCc---EEEEecCCCCCCCCCCCcccccCcc
Q 010784          326 ----SVVTIDLRTMQKVMTPAI-CKPIL---HSFSIM-PSKS-LICTGGIGK---AMTWDIRRSQDAVKPQPMAELDGHV  392 (501)
Q Consensus       326 ----~i~~~d~~~~~~~~~~~~-~~~~v---~~v~~~-~~~~-~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~~~h~  392 (501)
                          .+.++|..++........ ..+.|   ....+. +++. ++.....++   |.+++...+..       ..+....
T Consensus       207 q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-------~~lT~G~  279 (353)
T PF00930_consen  207 QNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-------RQLTSGD  279 (353)
T ss_dssp             STEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-------EESS-SS
T ss_pred             CCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-------eccccCc
Confidence                577778877655433322 22222   244444 5544 444444555   66667666531       3333334


Q ss_pred             cCeEE-EEecCC--eEEEEecCCC----cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          393 GSVTQ-LHMDPY--KIVTGGRDDL----RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       393 ~~v~~-l~~~~~--~~l~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      -.|+. +.+++.  .++.++..++    .|..-++.++..+..+.....     .-..+.|||+|++++...+
T Consensus       280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-----~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-----DHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-----TTEEEEE-TTSSEEEEEEE
T ss_pred             eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-----CceEEEECCCCCEEEEEEc
Confidence            45644 567776  5555554422    455555552344455533221     1168999999999887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.69  E-value=0.005  Score=56.90  Aligned_cols=178  Identities=15%  Similarity=0.108  Sum_probs=105.0

Q ss_pred             cEEEEeccCCCccccccceeecc-CCCCceeEEEEeec------CCeEEEEEeC----------CCeEEEEECCCC-ccc
Q 010784          233 TVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGH------KSFLLVTISK----------DSKVRVWDTSTS-SAV  294 (501)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~------~~~~l~s~s~----------dg~v~vwd~~~~-~~~  294 (501)
                      .|++.|..+...      +..+. .....+.+++...-      ...+++.|+.          .|.|.++++... ...
T Consensus         3 ~i~l~d~~~~~~------~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~   76 (321)
T PF03178_consen    3 SIRLVDPTTFEV------LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN   76 (321)
T ss_dssp             EEEEEETTTSSE------EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred             EEEEEeCCCCeE------EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc
Confidence            567777766542      22221 12333444443321      1567777753          289999999884 222


Q ss_pred             cceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc-eEeeec-cCCCcEEEEEEcCCCcEEEEEcC-CcEEEE
Q 010784          295 RSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ-KVMTPA-ICKPILHSFSIMPSKSLICTGGI-GKAMTW  371 (501)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~-d~i~iw  371 (501)
                      ............+.+.++....+.++++.+..+.+|++...+ ....-. .....+.++...  +++++.|.. +++.++
T Consensus        77 ~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   77 FKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL  154 (321)
T ss_dssp             -EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred             eEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence            233555555778999999888888888999999999998887 332222 123466666654  558888874 447766


Q ss_pred             ecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784          372 DIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       372 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~  421 (501)
                      ........  ...+.. ......++++.+-++ ..++++..+|.+.++...
T Consensus       155 ~~~~~~~~--l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  155 RYDEENNK--LILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEETTTE---EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEccCCE--EEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            44431110  011111 122446888888755 566667899999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.64  E-value=0.0095  Score=60.19  Aligned_cols=136  Identities=12%  Similarity=0.067  Sum_probs=91.2

Q ss_pred             CcEEEEEcCCCceEeeeccCCCc-EEEEEEcC------CCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEE
Q 010784          325 SSVVTIDLRTMQKVMTPAICKPI-LHSFSIMP------SKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQ  397 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~~~~-v~~v~~~~------~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  397 (501)
                      ..++-.|++.|+.+..+..+... |..++-..      ....++.-+.+.+..||.|-.....-....+.+ ......+|
T Consensus       504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~  582 (794)
T PF08553_consen  504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSC  582 (794)
T ss_pred             CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceE
Confidence            47999999999999999887654 55554321      223444444455999999975311000011111 22456778


Q ss_pred             EEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          398 LHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       398 l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      ++-+.+..||.||.+|.||+||- .|+.-.+..    .+-+.+|..+..+.||++|++.+.   ..+.+.+.
T Consensus       583 ~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~l----p~lG~pI~~iDvt~DGkwilaTc~---tyLlLi~t  646 (794)
T PF08553_consen  583 FATTEDGYIAVGSNKGDIRLYDR-LGKRAKTAL----PGLGDPIIGIDVTADGKWILATCK---TYLLLIDT  646 (794)
T ss_pred             EEecCCceEEEEeCCCcEEeecc-cchhhhhcC----CCCCCCeeEEEecCCCcEEEEeec---ceEEEEEE
Confidence            88888877777889999999994 444444432    344789999999999999998863   56777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.62  E-value=0.003  Score=62.06  Aligned_cols=101  Identities=18%  Similarity=0.236  Sum_probs=78.2

Q ss_pred             cCcEEEEee----CCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce
Q 010784          177 TENVLVTSS----CDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK  251 (501)
Q Consensus       177 ~~~~l~s~~----~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  251 (501)
                      ...+|+.++    ..|.|.||- +|.+.+... -.-.+++++|+    |..-.|+.|-.-|.+.+|...+.+.      -
T Consensus        26 sePlfAVA~fS~er~GSVtIfadtGEPqr~Vt-~P~hatSLCWH----pe~~vLa~gwe~g~~~v~~~~~~e~------h   94 (1416)
T KOG3617|consen   26 SEPLFAVASFSPERGGSVTIFADTGEPQRDVT-YPVHATSLCWH----PEEFVLAQGWEMGVSDVQKTNTTET------H   94 (1416)
T ss_pred             CCceeEEEEecCCCCceEEEEecCCCCCcccc-cceehhhhccC----hHHHHHhhccccceeEEEecCCcee------e
Confidence            566777665    358899994 766543322 11234569998    7778899999999999999888663      4


Q ss_pred             eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECC
Q 010784          252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS  289 (501)
Q Consensus       252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~  289 (501)
                      .....|..+|..+.|++ +|+.++++..-|.|.+|...
T Consensus        95 tv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence            55567999999999997 88899999999999999876

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.54  E-value=0.0078  Score=60.79  Aligned_cols=210  Identities=10%  Similarity=0.074  Sum_probs=118.2

Q ss_pred             CCCceEEee--CCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe-eCC
Q 010784          111 KPHDHILLD--NNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS-SCD  187 (501)
Q Consensus       111 ~~i~~~~~~--~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d  187 (501)
                      ....+|++.  .|..|++=|+..|..+-.+-. +.+....+..-. ....-.|.|.     -.+-...+.++|+.. ...
T Consensus       431 ~~n~~Lavg~k~DrSfVvRg~~igVFk~~~~~-~l~f~t~i~~i~-~~~g~~~~P~-----k~mL~~~d~~mil~~~~~~  503 (794)
T PF08553_consen  431 EKNSSLAVGYKNDRSFVVRGSKIGVFKNTDDD-GLEFSTAISNIS-TPKGKNFTPK-----KAMLHDQDRNMILLDPNNP  503 (794)
T ss_pred             CccceeEeeeccCceEEECCCcEeEEECCCCC-ceeeeEEecccc-cCCCcccCcc-----hhhhhccccceEeecCCCC
Confidence            347778877  578888888776655544211 111111111000 0000112221     000011144444443 344


Q ss_pred             CceEEec--CCceeeeccCCCCc-eEEEEeee-cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          188 HSIRLWW--KGSCQRCFKGHNGP-VSTLSDKL-LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       188 g~i~vwd--~~~~~~~~~~h~~~-v~~l~~s~-~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      ..|+-.|  .|+.+.....|... |..++=.- ...-+....+.|-.+..+..||.+-............+ .......|
T Consensus       504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~  582 (794)
T PF08553_consen  504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSC  582 (794)
T ss_pred             CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceE
Confidence            6666667  88888888877654 66665110 00012345667778889999999865420000001111 23445667


Q ss_pred             EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784          264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  343 (501)
                      ++-.  ...+||.|+.+|.||+||- .++.                                           ....+.+
T Consensus       583 ~aTt--~~G~iavgs~~G~IRLyd~-~g~~-------------------------------------------AKT~lp~  616 (794)
T PF08553_consen  583 FATT--EDGYIAVGSNKGDIRLYDR-LGKR-------------------------------------------AKTALPG  616 (794)
T ss_pred             EEec--CCceEEEEeCCCcEEeecc-cchh-------------------------------------------hhhcCCC
Confidence            7765  4558999999999999993 2211                                           1123445


Q ss_pred             CCCcEEEEEEcCCCcEEEEEcCCcEEEEecC
Q 010784          344 CKPILHSFSIMPSKSLICTGGIGKAMTWDIR  374 (501)
Q Consensus       344 ~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~  374 (501)
                      -..+|..|..+.||+++++.+...+.+++..
T Consensus       617 lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  617 LGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             CCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence            5789999999999999999998887777753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.45  E-value=0.081  Score=47.67  Aligned_cols=234  Identities=10%  Similarity=0.008  Sum_probs=120.6

Q ss_pred             eeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCC-
Q 010784          118 LDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKG-  196 (501)
Q Consensus       118 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-  196 (501)
                      ....+..++.|..+| +.+++...........  +...|..+...+             +-+.|+.-+ |+.+.+++.. 
T Consensus         3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~-------------~~~~llvLs-d~~l~~~~L~~   65 (275)
T PF00780_consen    3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLP-------------ELNLLLVLS-DGQLYVYDLDS   65 (275)
T ss_pred             cccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEec-------------ccCEEEEEc-CCccEEEEchh
Confidence            344577888888888 7888873322333333  233399999988             455555544 5999999711 


Q ss_pred             -ceee---e-----------ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          197 -SCQR---C-----------FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       197 -~~~~---~-----------~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                       ....   .           .......+...+-  .....+...+.......|.+|.......... .....+. -...+
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~-lp~~~  141 (275)
T PF00780_consen   66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAV--NGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEIS-LPDPP  141 (275)
T ss_pred             hccccccccccccccccccccccccCCeeEEee--ccccccceEEEEEECCEEEEEEEECCccccc-ceeEEEE-cCCCc
Confidence             1111   0           1112233444330  0112333334444556999998876422100 1233333 34677


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc------eecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM------TSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM  335 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  335 (501)
                      ..+.|..   +.++.|..+ ...+.|+.++...........      ......+..+-.-++..++.+.+.+.++=-..|
T Consensus       142 ~~i~~~~---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G  217 (275)
T PF00780_consen  142 SSIAFLG---NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNG  217 (275)
T ss_pred             EEEEEeC---CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCC
Confidence            8888873   356666654 478889987654322111000      011222333322232233333333444433344


Q ss_pred             ceEe--eeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCC
Q 010784          336 QKVM--TPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDA  379 (501)
Q Consensus       336 ~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~  379 (501)
                      +..+  .+. -...+.++++.  ..++++.+++.|.||++.+++.+
T Consensus       218 ~~~r~~~i~-W~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lv  260 (275)
T PF00780_consen  218 EPSRKSTIQ-WSSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELV  260 (275)
T ss_pred             CcCcccEEE-cCCchhEEEEE--CCEEEEECCCEEEEEECcCCcEE
Confidence            3332  111 23445566663  34777777777999999997543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>smart00320 WD40 WD40 repeats

Probab=97.44  E-value=0.00024  Score=41.38  Aligned_cols=38  Identities=29%  Similarity=0.437  Sum_probs=33.1

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW  194 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  194 (501)
                      +....+..|...|.++.|.+             ++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-------------DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-------------CCCEEEEecCCCeEEEcC
Confidence            44566778999999999998             678999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.42  E-value=0.15  Score=50.32  Aligned_cols=187  Identities=13%  Similarity=0.046  Sum_probs=104.8

Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccCCC-CceE----------EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHN-GPVS----------TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK  244 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~-~~v~----------~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~  244 (501)
                      +..++.++.++.|.-.|  +|+.+-.+.... ..+.          .+++      .+..++.++.|+.+...|..+++.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av------~~~~v~v~t~dg~l~ALDa~TGk~  142 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL------YDGKVFFGTLDARLVALDAKTGKV  142 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE------ECCEEEEEcCCCEEEEEECCCCCE
Confidence            35666666677777777  666654433110 1111          1222      234677788899999999999875


Q ss_pred             cccccceeecc--CCC--CceeE-EEEeecCCeEEEEEe------CCCeEEEEECCCCccccceeccccee---------
Q 010784          245 RGQQALKATLY--GHE--KPIKL-MSVAGHKSFLLVTIS------KDSKVRVWDTSTSSAVRSSCCVGMTS---------  304 (501)
Q Consensus       245 ~~~~~~~~~~~--~~~--~~v~~-l~~~~~~~~~l~s~s------~dg~v~vwd~~~~~~~~~~~~~~~~~---------  304 (501)
                            +-...  .+.  ..+++ -.+.  ++. ++.+.      .+|.|..+|.++++.+-.........         
T Consensus       143 ------~W~~~~~~~~~~~~~tssP~v~--~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~  213 (527)
T TIGR03075       143 ------VWSKKNGDYKAGYTITAAPLVV--KGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKP  213 (527)
T ss_pred             ------EeecccccccccccccCCcEEE--CCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccc
Confidence                  22221  111  11211 1111  343 44443      36899999999998765433321100         


Q ss_pred             ----------------c-CCC---ceeeecCCCeEEEEeCC-----------------cEEEEEcCCCceEeeeccCCCc
Q 010784          305 ----------------V-PGV---PVDMKCHESMLYIASGS-----------------SVVTIDLRTMQKVMTPAICKPI  347 (501)
Q Consensus       305 ----------------~-~~~---~~~~~~~~~~~~~~~~~-----------------~i~~~d~~~~~~~~~~~~~~~~  347 (501)
                                      . .+.   ...++...+.+++.++.                 .+.-.|+++++....++.....
T Consensus       214 ~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D  293 (527)
T TIGR03075       214 VGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHD  293 (527)
T ss_pred             cccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCC
Confidence                            0 001   11233334566666632                 5777899999998777652221


Q ss_pred             ---------EEEEEEcCCCc---EEEEEcCCc-EEEEecCCCCCC
Q 010784          348 ---------LHSFSIMPSKS---LICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       348 ---------v~~v~~~~~~~---~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                               ..-+.+..+|+   .++.+..++ +++.|.++++.+
T Consensus       294 ~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       294 EWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence                     11122324665   777888888 999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.014  Score=54.62  Aligned_cols=131  Identities=12%  Similarity=0.097  Sum_probs=90.8

Q ss_pred             cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc--------EEEEEcCCcEEEEecCCCCCCCCCCCcccccCc----cc
Q 010784          326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS--------LICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH----VG  393 (501)
Q Consensus       326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~--------~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h----~~  393 (501)
                      .++-.|++.|+.+..+..+.. |+-+.+.|+.+        .|+.-++.+|.-||.|-...    ..+...++|    ..
T Consensus       357 ~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~----~kl~~~q~kqy~~k~  431 (644)
T KOG2395|consen  357 KLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK----NKLAVVQSKQYSTKN  431 (644)
T ss_pred             cceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc----ceeeeeecccccccc
Confidence            788899999999998887766 77777777632        33433444499999985332    112223333    23


Q ss_pred             CeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          394 SVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       394 ~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      ...|.+-..+.+++.||.+|.|++||- .+....+..    .+-..+|..+..+.||++|+..+.   ..+.+-+.
T Consensus       432 nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl----PgLG~~I~hVdvtadGKwil~Tc~---tyLlLi~t  499 (644)
T KOG2395|consen  432 NFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL----PGLGDAIKHVDVTADGKWILATCK---TYLLLIDT  499 (644)
T ss_pred             ccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc----cccCCceeeEEeeccCcEEEEecc---cEEEEEEE
Confidence            456666666777777889999999997 565555543    455789999999999999988762   45655553

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=97.33  E-value=0.00043  Score=58.23  Aligned_cols=58  Identities=19%  Similarity=0.438  Sum_probs=51.3

Q ss_pred             CCCCCCcccccccHHHHHHHHhcC-ChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcC
Q 010784           12 SPSPSTTAIADLNEDAVAHCALNL-SLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWP   69 (501)
Q Consensus        12 ~~~~~~~~~~~Lp~e~~~~i~~~L-~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~   69 (501)
                      +|.|....|.+||.|++..|+.-| |.+||..++++--.++.+++++.+||.+|+=.|.
T Consensus       194 ~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~  252 (332)
T KOG3926|consen  194 EPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFN  252 (332)
T ss_pred             CCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            455567789999999999999766 8999999999999999999999999999987764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.0012  Score=62.71  Aligned_cols=91  Identities=9%  Similarity=0.127  Sum_probs=74.9

Q ss_pred             ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee-eeEeeccccEEEEeecCCCceEEEeec
Q 010784          392 VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG-CSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       392 ~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      ...+..+.|+|. .++|.+..+|.|-+..+. .+.+.++..     ++..++ +++|.|||+.||+|-  .||+|++-|+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-----p~~~v~~sL~W~~DGkllaVg~--kdG~I~L~Dv   91 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-----PGENVTASLCWRPDGKLLAVGF--KDGTIRLHDV   91 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-----CCCccceeeeecCCCCEEEEEe--cCCeEEEEEc
Confidence            346788999999 999999999999999887 777888842     334455 999999999999998  6699999999


Q ss_pred             cCCccce---eecCCCCceeeecc
Q 010784          470 SNATCPV---LKHEVQNDSKFWGP  490 (501)
Q Consensus       470 ~~~~~~~---~s~~~d~~~~~w~~  490 (501)
                      ..+....   .+-..|-+..+|.+
T Consensus        92 e~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   92 EKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             cCCCceeccccccccchheeeccc
Confidence            9988643   36778888899963

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.28  E-value=0.065  Score=51.24  Aligned_cols=227  Identities=11%  Similarity=0.064  Sum_probs=109.3

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      ........+..+.++|+|++++. ..+|...|+..... +.     ...+.-....|.+             + +.+|+-
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~-r~-----k~~G~g~~~vw~~-------------~-n~yAv~   85 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW-RN-----KAFGSGLSFVWSS-------------R-NRYAVL   85 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT-EE-----EEEEE-SEEEE-T-------------S-SEEEEE
T ss_pred             cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC-cc-----cccCceeEEEEec-------------C-ccEEEE
Confidence            34445556899999999999998 45677777773321 11     1134556678886             3 446666


Q ss_pred             eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784          185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      ...++|.|+.  .......++. ...+..+-      . |.+|...+.+ .|.+||..++.      .+..+...  +|.
T Consensus        86 ~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If------~-G~LL~~~~~~-~i~~yDw~~~~------~i~~i~v~--~vk  148 (443)
T PF04053_consen   86 ESSSTIKIYKNFKNEVVKSIKL-PFSVEKIF------G-GNLLGVKSSD-FICFYDWETGK------LIRRIDVS--AVK  148 (443)
T ss_dssp             -TTS-EEEEETTEE-TT------SS-EEEEE--------SSSEEEEETT-EEEEE-TTT--------EEEEESS---E-E
T ss_pred             ECCCeEEEEEcCccccceEEcC-CcccceEE------c-CcEEEEECCC-CEEEEEhhHcc------eeeEEecC--CCc
Confidence            6688999974  2222223332 12344443      2 7777776654 89999999886      46666533  388


Q ss_pred             EEEEeecCCeEEEEEeCCCeEEEEECCCCcccc-----ceecccce-ecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR-----SSCCVGMT-SVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      .+.|++ ++.+++..+.+ .+.+++........     ........ .....+.+..|.++..+.++...++-  +-.|+
T Consensus       149 ~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~~lkY--l~~Ge  224 (443)
T PF04053_consen  149 YVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSNHLKY--LVNGE  224 (443)
T ss_dssp             EEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TTEEEE--EETTE
T ss_pred             EEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCCeEEE--EEcCC
Confidence            999996 67777777754 67777654330000     00011111 22555666667777444444444443  33332


Q ss_pred             eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecC
Q 010784          337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIR  374 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~  374 (501)
                      .. .+..-..+++=+.+.+..+.+.....+. +..+.+.
T Consensus       225 ~~-~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  225 TG-IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EE-EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             cc-eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            21 1111134455555566555666665554 6666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.28  E-value=0.15  Score=46.96  Aligned_cols=278  Identities=11%  Similarity=0.044  Sum_probs=115.7

Q ss_pred             EeeCCcEEEe-ecCCeeeEEEE--ecccccccceecccCC-cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          117 LLDNNDIFST-QGSSIQNIKID--NFLSESYYRATLSDHK-ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       117 ~~~~~~~~~~-~g~~d~~i~vw--~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      +|.++|..++ .+..++...+|  |+.+  ..+..|..+. +......+++             +.+.++-......|+-
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~-------------~~~~~~Yv~~~~~l~~  106 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSP-------------DDRALYYVKNGRSLRR  106 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-T-------------TSSEEEEEETTTEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEec-------------CCCeEEEEECCCeEEE
Confidence            5677885555 44446555555  5554  4444555443 2233455556             5566654444456666


Q ss_pred             ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC----------------------CCcEEEEeccCCCccccc
Q 010784          193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE----------------------DATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~----------------------dg~i~iwd~~~~~~~~~~  248 (501)
                      -|  +.+....+.....-+-...|..  +.++..++-.-.                      ...|..-|+.+++     
T Consensus       107 vdL~T~e~~~vy~~p~~~~g~gt~v~--n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~-----  179 (386)
T PF14583_consen  107 VDLDTLEERVVYEVPDDWKGYGTWVA--NSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE-----  179 (386)
T ss_dssp             EETTT--EEEEEE--TTEEEEEEEEE---TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------
T ss_pred             EECCcCcEEEEEECCcccccccceee--CCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc-----
Confidence            66  4333333444444444445532  244555432210                      1223344555443     


Q ss_pred             cceeeccCCCCceeEEEEeecCCeEEEEEeC---CCe-EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784          249 ALKATLYGHEKPIKLMSVAGHKSFLLVTISK---DSK-VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       249 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~---dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (501)
                        ...+..-+..+..+.++|.++..|+-|-+   +.. -++|-+++...                               
T Consensus       180 --~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-------------------------------  226 (386)
T PF14583_consen  180 --RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-------------------------------  226 (386)
T ss_dssp             --EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------------------------------
T ss_pred             --eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-------------------------------
Confidence              23333344556677888877777777643   221 24444432210                               


Q ss_pred             CcEEEEEcCCCceEeeeccC--CCcEEEEEEcCCCcEEEEEc-----CCc-EEEEecCCCCCCCCCCCcccccCcccCeE
Q 010784          325 SSVVTIDLRTMQKVMTPAIC--KPILHSFSIMPSKSLICTGG-----IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVT  396 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~--~~~v~~v~~~~~~~~l~~~~-----~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  396 (501)
                                  ....+..+  ...+..=-|.|||..|.--+     .+. |.-+|..+++..       .+ .......
T Consensus       227 ------------~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~-------~~-~~~p~~~  286 (386)
T PF14583_consen  227 ------------NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR-------RL-MEMPWCS  286 (386)
T ss_dssp             --------------EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE-------EE-EEE-SEE
T ss_pred             ------------cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce-------EE-EeCCcee
Confidence                        00111111  12234445777876554322     244 666777775421       11 1122344


Q ss_pred             EEEecCC-eEEEEecCCC----------------cEEEEeCCCcccccccccCC-----CCCCCc-ceeeeEeeccccEE
Q 010784          397 QLHMDPY-KIVTGGRDDL----------------RINIWETDTGMLANSLLCNY-----PEEADI-STGCSAMAVSGCRI  453 (501)
Q Consensus       397 ~l~~~~~-~~l~~gs~dg----------------~i~iwd~~~~~~~~~~~~~~-----~~~~~~-~v~~~~~s~~g~~l  453 (501)
                      .+..+++ .++++=+.|.                -|+++++..++... +..|.     ..++.. .=.-..|+|||+++
T Consensus       287 H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~V  365 (386)
T PF14583_consen  287 HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWV  365 (386)
T ss_dssp             EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEE
T ss_pred             eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEE
Confidence            5556777 7777644442                45677877654321 11110     011111 11356899999998


Q ss_pred             EEeecCCCceEEEeeccC
Q 010784          454 VTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       454 ~s~~~d~~g~i~~w~~~~  471 (501)
                      +-.|. ..|...||-+.-
T Consensus       366 lF~Sd-~~G~~~vY~v~i  382 (386)
T PF14583_consen  366 LFRSD-MEGPPAVYLVEI  382 (386)
T ss_dssp             EEEE--TTSS-EEEEEE-
T ss_pred             EEECC-CCCCccEEEEeC
Confidence            88763 567777765543

>smart00320 WD40 WD40 repeats

Probab=97.27  E-value=0.00068  Score=39.33  Aligned_cols=38  Identities=39%  Similarity=0.781  Sum_probs=32.7

Q ss_pred             ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEe
Q 010784          197 SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS  238 (501)
Q Consensus       197 ~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd  238 (501)
                      ..+..+..|...|.++.|.    +.+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFS----PDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEEC----CCCCEEEEecCCCeEEEcC
Confidence            4566677899999999996    6778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.25  E-value=0.24  Score=48.95  Aligned_cols=28  Identities=14%  Similarity=0.083  Sum_probs=23.1

Q ss_pred             eEEEEecCCCcEEEEeCCCccccccccc
Q 010784          404 KIVTGGRDDLRINIWETDTGMLANSLLC  431 (501)
Q Consensus       404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~  431 (501)
                      .++..++.||.++.+|.++|+.+-.+..
T Consensus       473 ~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       473 DLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             cEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            3555567899999999999999988854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.24  E-value=0.044  Score=52.18  Aligned_cols=181  Identities=17%  Similarity=0.056  Sum_probs=101.7

Q ss_pred             CCceeEEEEeecCCeEEEEE--eCC-CeEEEEECCCCccccceecccceecCCCceeeecCCCe--EEEEeCC----cEE
Q 010784          258 EKPIKLMSVAGHKSFLLVTI--SKD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIASGS----SVV  328 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~--s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~i~  328 (501)
                      ...+..-+|+|....+....  ... ..+.++|+.+++.....      ...+......+++++  ++++...    .|.
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy  265 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence            34444556665332222221  122 45899999988653322      234444455555543  4444322    799


Q ss_pred             EEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC--Cc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784          329 TIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI--GK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-  403 (501)
Q Consensus       329 ~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~--d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-  403 (501)
                      ++|+...+... +....+.-..-.|+|||+.++-.++  +.  |.+++.......     ..+..+  +.-..-.|+|+ 
T Consensus       266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-----riT~~~--~~~~~p~~SpdG  337 (425)
T COG0823         266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-----RLTFSG--GGNSNPVWSPDG  337 (425)
T ss_pred             EEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-----EeeccC--CCCcCccCCCCC
Confidence            99998887444 3333333346789999998887773  33  777777765421     122222  22225678999 


Q ss_pred             e-EEEEecCCCc--EEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          404 K-IVTGGRDDLR--INIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       404 ~-~l~~gs~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      + ++..+..+|.  |.+.|+.++..++.+.      .......-.|.++|+.+...+.
T Consensus       338 ~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt------~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         338 DKIVFESSSGGQWDIDKNDLASGGKIRILT------STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CEEEEEeccCCceeeEEeccCCCCcEEEcc------ccccCCCCCcCCCCceEEEecc
Confidence            4 4444433455  6777776665444442      1233445678889988877663

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.22  E-value=0.092  Score=52.33  Aligned_cols=146  Identities=14%  Similarity=0.096  Sum_probs=79.6

Q ss_pred             eCCcEEEeecCCe------eeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC-C--
Q 010784          119 DNNDIFSTQGSSI------QNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-H--  188 (501)
Q Consensus       119 ~~~~~~~~~g~~d------~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-g--  188 (501)
                      +..+.+++.|+..      ..+..+|..++ ......+. +...-.+++..              ++...++|+.| |  
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--------------~~~lYv~GG~~~~~~  346 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--------------NGKLYVVGGYDSGSD  346 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--------------CCEEEEEccccCCCc
Confidence            5556777778776      46778888764 12222222 23334455554              47899999999 3  


Q ss_pred             ---ceEEec--CCc--eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCc-----EEEEeccCCCccccccceeeccC
Q 010784          189 ---SIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDAT-----VRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       189 ---~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                         ++..||  ..+  .+........... ++.     -+|.+.++|+.||.     |-.||..+.+-    ..+.... 
T Consensus       347 ~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~~-----l~g~iYavGG~dg~~~l~svE~YDp~~~~W----~~va~m~-  415 (571)
T KOG4441|consen  347 RLSSVERYDPRTNQWTPVAPMNTKRSDFG-VAV-----LDGKLYAVGGFDGEKSLNSVECYDPVTNKW----TPVAPML-  415 (571)
T ss_pred             ccceEEEecCCCCceeccCCccCccccce-eEE-----ECCEEEEEeccccccccccEEEecCCCCcc----cccCCCC-
Confidence               355666  222  1112222222222 222     36788999998874     67788777542    2222222 


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCe------EEEEECCCCc
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSK------VRVWDTSTSS  292 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~------v~vwd~~~~~  292 (501)
                        ..........-++.+.++|+.++.      +..||..+.+
T Consensus       416 --~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  416 --TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             --cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence              223333333337788888886653      4555555543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.18  E-value=0.13  Score=48.99  Aligned_cols=193  Identities=11%  Similarity=0.031  Sum_probs=101.8

Q ss_pred             cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce----ecCCC
Q 010784          233 TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT----SVPGV  308 (501)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~----~~~~~  308 (501)
                      .|++|+.....       +..+.-..+.|.++.|..  ...|+....||.++++|+....   .+......    ...+.
T Consensus        62 ~I~iys~sG~l-------l~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~  129 (410)
T PF04841_consen   62 SIQIYSSSGKL-------LSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECR  129 (410)
T ss_pred             EEEEECCCCCE-------eEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce---eechhhhccccCccccc
Confidence            37777665432       333332237888999974  4567777899999999987443   11111111    11222


Q ss_pred             ceeeecCCCeEEEEeCC-cEEEEEcCCCc-eEeee---cc-------CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784          309 PVDMKCHESMLYIASGS-SVVTIDLRTMQ-KVMTP---AI-------CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       309 ~~~~~~~~~~~~~~~~~-~i~~~d~~~~~-~~~~~---~~-------~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~  375 (501)
                      +....+..+++++.++. .+.+..-.... ....+   ..       +........++.+....+....+. +.+.+-..
T Consensus       130 i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~  209 (410)
T PF04841_consen  130 IFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS  209 (410)
T ss_pred             ccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence            33334444555555443 44443222211 11111   11       000000123444555555555555 66444333


Q ss_pred             CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc
Q 010784          376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC  451 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  451 (501)
                      .+         .+. ..+++..+++||+ +++|.-..+|.+.+....-.+.+..+...    .......+.|+-+..
T Consensus       210 ~~---------~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~----~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  210 FK---------QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD----SKSPPKQMAWCGNDA  272 (410)
T ss_pred             cc---------ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC----cCCCCcEEEEECCCc
Confidence            21         122 2468999999999 88888888999999887656666555432    233455666665543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.0022  Score=60.93  Aligned_cols=93  Identities=20%  Similarity=0.225  Sum_probs=74.7

Q ss_pred             CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceE-EEEeeecCCCCCCEEEEeeC
Q 010784          153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVS-TLSDKLLGDGSGKILASGGE  230 (501)
Q Consensus       153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~-~l~~s~~~~~~~~~l~sg~~  230 (501)
                      ...|.-+.|+|             .-.++|.+..+|.|.+.. .-+.+-++..|..+++ +++|.    ++|+.|+.|-.
T Consensus        20 ~~~i~~~ewnP-------------~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~----~DGkllaVg~k   82 (665)
T KOG4640|consen   20 PINIKRIEWNP-------------KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWR----PDGKLLAVGFK   82 (665)
T ss_pred             ccceEEEEEcC-------------ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeec----CCCCEEEEEec
Confidence            34577888988             789999999999998886 6667778877888888 99995    89999999999


Q ss_pred             CCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784          231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA  267 (501)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  267 (501)
                      ||+|++.|..++..     +......-...|.++-|.
T Consensus        83 dG~I~L~Dve~~~~-----l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   83 DGTIRLHDVEKGGR-----LVSFLFSVETDISKGIWD  114 (665)
T ss_pred             CCeEEEEEccCCCc-----eeccccccccchheeecc
Confidence            99999999999874     333334455667777775

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.0052  Score=62.19  Aligned_cols=112  Identities=12%  Similarity=0.138  Sum_probs=80.4

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      +..+..--.+.+++.|+..|.+-..|+...-.....-..-.++|++++|+.             +|.+++.|-.+|.|.+
T Consensus        90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-------------dg~~l~~G~~~G~V~v  156 (1206)
T KOG2079|consen   90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-------------DGSLLLAGLGDGHVTV  156 (1206)
T ss_pred             cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-------------CCceeccccCCCcEEE
Confidence            333333445677888888888888887753222233334567899999998             8999999999999999


Q ss_pred             ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEecc
Q 010784          193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLS  240 (501)
Q Consensus       193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~  240 (501)
                      ||  .++.++.+..|..+.+.+-++-. ...+..++++...|.  +|.+.
T Consensus       157 ~D~~~~k~l~~i~e~~ap~t~vi~v~~-t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  157 WDMHRAKILKVITEHGAPVTGVIFVGR-TSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EEccCCcceeeeeecCCccceEEEEEE-eCCCcEEEEccCCCc--eEEEE
Confidence            99  66788888888887777665422 245557888877776  56543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.017  Score=58.78  Aligned_cols=101  Identities=18%  Similarity=0.308  Sum_probs=73.0

Q ss_pred             cCcEEEEeeCCCceEEec-CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784          177 TENVLVTSSCDHSIRLWW-KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd-~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      .+..++.|+..|.+-..| ++..-  ..=..-.++|++++|+    .+|..++.|-.+|.|.+||...++      ..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn----~dg~~l~~G~~~G~V~v~D~~~~k------~l~~  167 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN----QDGSLLLAGLGDGHVTVWDMHRAK------ILKV  167 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec----CCCceeccccCCCcEEEEEccCCc------ceee
Confidence            356788899899999888 54322  2222356899999996    899999999999999999999876      4677


Q ss_pred             ccCCCCceeEEEEee--cCCeEEEEEeCCCeEEEEECC
Q 010784          254 LYGHEKPIKLMSVAG--HKSFLLVTISKDSKVRVWDTS  289 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~--~~~~~l~s~s~dg~v~vwd~~  289 (501)
                      +..|..+.+++-+.-  .++..++++...|.  +|.+.
T Consensus       168 i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  168 ITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            776776666554432  13446777777775  56543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.03  E-value=0.00029  Score=63.68  Aligned_cols=47  Identities=17%  Similarity=0.313  Sum_probs=42.1

Q ss_pred             ccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhh
Q 010784           21 ADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQ   67 (501)
Q Consensus        21 ~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~   67 (501)
                      ..||+|+++++|+|||-..|+++|++|+.|+.++.|-.-|+++-.-.
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t  119 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFT  119 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhc
Confidence            34999999999999999999999999999999999999998754443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.01  E-value=0.25  Score=49.32  Aligned_cols=228  Identities=16%  Similarity=0.113  Sum_probs=120.9

Q ss_pred             CCCEEEEeeCCC------cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEEC
Q 010784          221 SGKILASGGEDA------TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDT  288 (501)
Q Consensus       221 ~~~~l~sg~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~  288 (501)
                      .+.+++.|+.++      .+..+|..++.-    .....+. ....-.++++.  ++.+.++|+.|      ..+..||.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w----~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEW----SSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcE----eecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecC
Confidence            456777777763      577888877632    2222233 22223445555  56889999988      35778888


Q ss_pred             CCCccccceecccceecCCCceeeecCCCeEEEEeCC-------cEEEEEcCCCceEeeeccC--CCcEEEEEEcCCCcE
Q 010784          289 STSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-------SVVTIDLRTMQKVMTPAIC--KPILHSFSIMPSKSL  359 (501)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~d~~~~~~~~~~~~~--~~~v~~v~~~~~~~~  359 (501)
                      ++.+...    .........-..+......+++..|.       ++..||.++.+-...-...  ....-.+.  -+|.+
T Consensus       357 ~~~~W~~----~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~i  430 (571)
T KOG4441|consen  357 RTNQWTP----VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKL  430 (571)
T ss_pred             CCCceec----cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEE
Confidence            8876422    22222333334444455556655543       5888888776543222111  11122222  27888


Q ss_pred             EEEEcCC------c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCc-----EEEEeCCCccccc
Q 010784          360 ICTGGIG------K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLR-----INIWETDTGMLAN  427 (501)
Q Consensus       360 l~~~~~d------~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~-----i~iwd~~~~~~~~  427 (501)
                      .++|+.+      . +..||..+.+-    ..+..+..-.. -..++.-.+.+++.|+.|+.     |..||..+.+-..
T Consensus       431 Yi~GG~~~~~~~l~sve~YDP~t~~W----~~~~~M~~~R~-~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  431 YIIGGGDGSSNCLNSVECYDPETNTW----TLIAPMNTRRS-GFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             EEEcCcCCCccccceEEEEcCCCCce----eecCCcccccc-cceEEEECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence            8888732      2 77888887652    22223222111 12255556677777777763     7788887755433


Q ss_pred             ccccCCCCCCCcceeeeEeeccccEEEEeecCC---CceEEEeeccC
Q 010784          428 SLLCNYPEEADISTGCSAMAVSGCRIVTASYGE---PGLLQFRDFSN  471 (501)
Q Consensus       428 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~---~g~i~~w~~~~  471 (501)
                      .-..   ......+..  ..-+++..++|+.|.   -++|..||-..
T Consensus       506 v~~m---~~~rs~~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  506 VAPM---TSPRSAVGV--VVLGGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             cccC---ccccccccE--EEECCEEEEEecccCccccceeEEcCCCC
Confidence            2110   111122222  222666777777551   23455665443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.91  E-value=0.0032  Score=52.21  Aligned_cols=104  Identities=13%  Similarity=0.197  Sum_probs=68.1

Q ss_pred             CcEEEEeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          178 ENVLVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      +..++.|+.+|.|.+|+   .+.....+..-...|.++--.   -.++.+..+++.||.|+.|++...+.      +...
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~---~~~~~~~c~~~~dg~ir~~n~~p~k~------~g~~  140 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN---GRDSSLGCVGAQDGRIRACNIKPNKV------LGYV  140 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceecccc---ccccceeEEeccCCceeeeccccCce------eeee
Confidence            56899999999999998   333333333334455554321   24456889999999999999988763      5555


Q ss_pred             cCCC-CceeEEEEeecCCeEEEEE--eCCCeEEEEECCCC
Q 010784          255 YGHE-KPIKLMSVAGHKSFLLVTI--SKDSKVRVWDTSTS  291 (501)
Q Consensus       255 ~~~~-~~v~~l~~~~~~~~~l~s~--s~dg~v~vwd~~~~  291 (501)
                      ..|+ .++..+.... .+..+..+  |.|..++.|++..-
T Consensus       141 g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  141 GQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ccccCCCcceeEEec-CCceEEeeccccchhhhhcchhhh
Confidence            5566 4555444443 45556666  67777777777653

>PHA02713 hypothetical protein; Provisional

Probab=96.90  E-value=0.23  Score=49.59  Aligned_cols=190  Identities=8%  Similarity=0.068  Sum_probs=93.7

Q ss_pred             CCCEEEEeeCC------CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC-----eEEEEECC
Q 010784          221 SGKILASGGED------ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS-----KVRVWDTS  289 (501)
Q Consensus       221 ~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg-----~v~vwd~~  289 (501)
                      ++.+++.|+.+      ..+..||..++.-    ..+..+....... +++..  ++.+.+.||.++     .+..||..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W----~~~~~m~~~R~~~-~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~  375 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH----VELPPMIKNRCRF-SLAVI--DDTIYAIGGQNGTNVERTIECYTMG  375 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeE----eeCCCCcchhhce-eEEEE--CCEEEEECCcCCCCCCceEEEEECC
Confidence            56777777754      2466778766531    1122222111111 22332  677888888764     47889988


Q ss_pred             CCccccceecccceecCCCceeeecCCCeEEEEeC-------------------------CcEEEEEcCCCceEeeeccC
Q 010784          290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------------------------SSVVTIDLRTMQKVMTPAIC  344 (501)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~i~~~d~~~~~~~~~~~~~  344 (501)
                      +.+....    ..........++...++.+++..|                         ..+..||.++.+-...-...
T Consensus       376 ~~~W~~~----~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~  451 (557)
T PHA02713        376 DDKWKML----PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW  451 (557)
T ss_pred             CCeEEEC----CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC
Confidence            7643221    111111111122222344444433                         13667787765432211111


Q ss_pred             CCcEEEEEEcCCCcEEEEEcCC------c-EEEEecCC-CCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCC--c
Q 010784          345 KPILHSFSIMPSKSLICTGGIG------K-AMTWDIRR-SQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDL--R  414 (501)
Q Consensus       345 ~~~v~~v~~~~~~~~l~~~~~d------~-i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg--~  414 (501)
                      ......-...-++++.+.|+.+      . +..||..+ .+    ...+..+...... .+++...+++.+.|+.||  .
T Consensus       452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~~~~m~~~r~~-~~~~~~~~~iyv~Gg~~~~~~  526 (557)
T PHA02713        452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WELITTTESRLSA-LHTILHDNTIMMLHCYESYML  526 (557)
T ss_pred             cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC----eeEccccCccccc-ceeEEECCEEEEEeeecceee
Confidence            1111111122257777777632      3 67788886 33    2333444332222 334444557777777888  6


Q ss_pred             EEEEeCCCcccc
Q 010784          415 INIWETDTGMLA  426 (501)
Q Consensus       415 i~iwd~~~~~~~  426 (501)
                      +..||..+.+-.
T Consensus       527 ~e~yd~~~~~W~  538 (557)
T PHA02713        527 QDTFNVYTYEWN  538 (557)
T ss_pred             hhhcCccccccc
Confidence            778888776544

>PHA02713 hypothetical protein; Provisional

Probab=96.80  E-value=0.34  Score=48.45  Aligned_cols=190  Identities=9%  Similarity=0.008  Sum_probs=95.6

Q ss_pred             CCeEEEEEeCC------CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-------cEEEEEcCCCc
Q 010784          270 KSFLLVTISKD------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-------SVVTIDLRTMQ  336 (501)
Q Consensus       270 ~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~d~~~~~  336 (501)
                      ++.+++.||.+      ..+..||..+.....    .........-..+...++.+++..|.       .+..||..+.+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~----~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE----LPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEee----CCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            66778888754      347788887764321    11111111122333344555555442       47889987654


Q ss_pred             eEe--eeccCCCcEEEEEEcCCCcEEEEEcCC-----------------------c-EEEEecCCCCCCCCCCCcccccC
Q 010784          337 KVM--TPAICKPILHSFSIMPSKSLICTGGIG-----------------------K-AMTWDIRRSQDAVKPQPMAELDG  390 (501)
Q Consensus       337 ~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d-----------------------~-i~iwd~~~~~~~~~~~~~~~~~~  390 (501)
                      -..  .+.........+.+  +|++.+.|+.+                       . +..||..+.+    ...+..+..
T Consensus       379 W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~----W~~v~~m~~  452 (557)
T PHA02713        379 WKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI----WETLPNFWT  452 (557)
T ss_pred             EEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe----EeecCCCCc
Confidence            322  22211111222222  67788877732                       2 6778877653    222222221


Q ss_pred             cccCeEEEEecCCeEEEEecCC------CcEEEEeCCC-cc--cccccccCCCCCCCcceeeeEeeccccEEEEeecCCC
Q 010784          391 HVGSVTQLHMDPYKIVTGGRDD------LRINIWETDT-GM--LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP  461 (501)
Q Consensus       391 h~~~v~~l~~~~~~~l~~gs~d------g~i~iwd~~~-~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~  461 (501)
                      .... .+++...+++.+.|+.+      ..+..||..+ .+  .+..+.     ........++  -+|+..++||.+..
T Consensus       453 ~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-----~~r~~~~~~~--~~~~iyv~Gg~~~~  524 (557)
T PHA02713        453 GTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-----SRLSALHTIL--HDNTIMMLHCYESY  524 (557)
T ss_pred             cccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-----cccccceeEE--ECCEEEEEeeecce
Confidence            1111 23344445565655543      2467899886 33  333332     1112222222  38888899986533


Q ss_pred             ceEEEeeccCCcccee
Q 010784          462 GLLQFRDFSNATCPVL  477 (501)
Q Consensus       462 g~i~~w~~~~~~~~~~  477 (501)
                      ..+..||..+++-..+
T Consensus       525 ~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        525 MLQDTFNVYTYEWNHI  540 (557)
T ss_pred             eehhhcCcccccccch
Confidence            3777788777664433

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.80  E-value=0.092  Score=51.43  Aligned_cols=138  Identities=10%  Similarity=0.009  Sum_probs=81.2

Q ss_pred             CCCCEEEEeeCCCcEEEEeccC----CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc
Q 010784          220 GSGKILASGGEDATVRLWSLSS----SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR  295 (501)
Q Consensus       220 ~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~  295 (501)
                      ++|++...+  ++.|.+.|..+    +..     ....+. -......+.++|+....++++..+.+|.|.|+.+.+...
T Consensus       286 kdGK~~~V~--gn~V~VID~~t~~~~~~~-----v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        286 KAGKFKTIG--GSKVPVVDGRKAANAGSA-----LTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hCCCEEEEC--CCEEEEEECCccccCCcc-----eEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence            466666653  57899999887    222     233333 344557889999444455555669999999998865311


Q ss_pred             c------eecccceecCCCceeeecCCCeEEEE---eCCcEEEEEcCC----------CceEeeeccCCCcE-----EEE
Q 010784          296 S------SCCVGMTSVPGVPVDMKCHESMLYIA---SGSSVVTIDLRT----------MQKVMTPAICKPIL-----HSF  351 (501)
Q Consensus       296 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~----------~~~~~~~~~~~~~v-----~~v  351 (501)
                      .      ..........-.++...+++++...+   .++++..|++.+          ...+..+..|-.+-     ..=
T Consensus       358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~  437 (635)
T PRK02888        358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE  437 (635)
T ss_pred             hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence            1      01122224455666777777654333   357999999876          22333343332221     122


Q ss_pred             EEcCCCcEEEEEcC
Q 010784          352 SIMPSKSLICTGGI  365 (501)
Q Consensus       352 ~~~~~~~~l~~~~~  365 (501)
                      .-.|+|++|++...
T Consensus       438 t~~~dgk~l~~~nk  451 (635)
T PRK02888        438 TKEADGKWLVSLNK  451 (635)
T ss_pred             cCCCCCCEEEEccc
Confidence            23578888887763

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.64  E-value=0.99  Score=46.26  Aligned_cols=293  Identities=16%  Similarity=0.039  Sum_probs=145.9

Q ss_pred             EeeccCcCcccccCCCCcCcEEEEeeCCCceEEec------CCc---eeeeccCCCCceEEEEeeecCCCCCCEEEEee-
Q 010784          160 RLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW------KGS---CQRCFKGHNGPVSTLSDKLLGDGSGKILASGG-  229 (501)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd------~~~---~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-  229 (501)
                      ..-+.++.++..+-..-+...+++||.-|.-++-.      .+.   .+.++. .-+||..++.--.....+..+++++ 
T Consensus       299 kve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsG  377 (1096)
T KOG1897|consen  299 KVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSG  377 (1096)
T ss_pred             EEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeC
Confidence            33333333443333333577888999877666554      111   112333 3468888876411111334566554 


Q ss_pred             --CCCcEEEEeccCCCccccccceeeccCCCCceeEEE--EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceec
Q 010784          230 --EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS--VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV  305 (501)
Q Consensus       230 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~--~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~  305 (501)
                        .||++|+..-.-+-.  + .-...+.| -..++.++  +.++-.++++.+-. +.-++..+...  ............
T Consensus       378 a~kdgSLRiiRngi~I~--e-~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~eTrvl~i~~e--~ee~~~~gf~~~  450 (1096)
T KOG1897|consen  378 AFKDGSLRIIRNGIGID--E-LASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-SETRVLNISEE--VEETEDPGFSTD  450 (1096)
T ss_pred             CCCCCcEEEEecccccc--e-eeEeecCC-ccceeEeeccccccCCcEEEEEec-cceEEEEEccc--eEEecccccccc
Confidence              589999986443221  0 01222333 34556666  44433345554433 34455555432  111111111111


Q ss_pred             CCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCC
Q 010784          306 PGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQP  384 (501)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~  384 (501)
                      ....++-....+.++-++...|++++-.  .....+.. .+.++....+.+...++.++.+. +...++......     
T Consensus       451 ~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~-----  522 (1096)
T KOG1897|consen  451 EQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLR-----  522 (1096)
T ss_pred             CceEEEEccCCceEEEEecccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeecccee-----
Confidence            2222222333444555566678887765  23333333 33444444445555666677666 666666654411     


Q ss_pred             cccccCcccCeEEEEecCC-------eEEEEecCCCcEEEEeC-CCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784          385 MAELDGHVGSVTQLHMDPY-------KIVTGGRDDLRINIWET-DTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA  456 (501)
Q Consensus       385 ~~~~~~h~~~v~~l~~~~~-------~~l~~gs~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  456 (501)
                      ...-......|.|+.++|-       ++++.|..+..+.+--. .+...+....... .--...|.-..|-.|+.+|.++
T Consensus       523 e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~-~~iPRSIl~~~~e~d~~yLlva  601 (1096)
T KOG1897|consen  523 EVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG-EIIPRSILLTTFEGDIHYLLVA  601 (1096)
T ss_pred             eeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC-CccchheeeEEeeccceEEEEE
Confidence            0111122567889988862       48888877666554432 3332222221111 1112334555677778999999


Q ss_pred             ecCCCceEEEeeccC
Q 010784          457 SYGEPGLLQFRDFSN  471 (501)
Q Consensus       457 ~~d~~g~i~~w~~~~  471 (501)
                      .  +||.+..+-+..
T Consensus       602 l--gdG~l~~fv~d~  614 (1096)
T KOG1897|consen  602 L--GDGALLYFVLDI  614 (1096)
T ss_pred             c--CCceEEEEEEEc
Confidence            8  669888776543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.64  E-value=0.0078  Score=50.01  Aligned_cols=105  Identities=15%  Similarity=0.085  Sum_probs=67.8

Q ss_pred             cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee
Q 010784          122 DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ  199 (501)
Q Consensus       122 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~  199 (501)
                      +.-+++|..+|.|.+|++.-..........-...|-++--.-.            ++.+..+++.||.|+.|+  ..+.+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~------------~~~~~c~~~~dg~ir~~n~~p~k~~  137 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGR------------DSSLGCVGAQDGRIRACNIKPNKVL  137 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceecccccc------------ccceeEEeccCCceeeeccccCcee
Confidence            4568889999999999987433333333333334444322221            567899999999999999  45555


Q ss_pred             eeccCCC-CceEEEEeeecCCCCCCEEEEe--eCCCcEEEEeccCC
Q 010784          200 RCFKGHN-GPVSTLSDKLLGDGSGKILASG--GEDATVRLWSLSSS  242 (501)
Q Consensus       200 ~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg--~~dg~i~iwd~~~~  242 (501)
                      .....|+ .++..+..+    ..+.+++++  |.|..++.|++...
T Consensus       138 g~~g~h~~~~~e~~ivv----~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  138 GYVGQHNFESGEELIVV----GSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             eeeccccCCCcceeEEe----cCCceEEeeccccchhhhhcchhhh
Confidence            5555566 455555443    556677776  77777777777654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.56  E-value=0.46  Score=41.41  Aligned_cols=182  Identities=14%  Similarity=0.115  Sum_probs=107.1

Q ss_pred             eEEEEeeecCCCCCCEEEEeeCCC--cEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784          209 VSTLSDKLLGDGSGKILASGGEDA--TVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDSKVRV  285 (501)
Q Consensus       209 v~~l~~s~~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~v  285 (501)
                      ...+.|.    .++.++-+.+.-|  .|+.+|+.+++.      ..... ...---..+...  ++.+..-.=.++...+
T Consensus        47 TQGL~~~----~~g~LyESTG~yG~S~l~~~d~~tg~~------~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~  114 (264)
T PF05096_consen   47 TQGLEFL----DDGTLYESTGLYGQSSLRKVDLETGKV------LQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFV  114 (264)
T ss_dssp             EEEEEEE----ETTEEEEEECSTTEEEEEEEETTTSSE------EEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEE
T ss_pred             CccEEec----CCCEEEEeCCCCCcEEEEEEECCCCcE------EEEEECCccccceeEEEE--CCEEEEEEecCCeEEE
Confidence            4467773    4677777777666  799999999863      22221 122223455555  4556666677899999


Q ss_pred             EECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeeccC-----CCcEEEEEEcCCCcE
Q 010784          286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAIC-----KPILHSFSIMPSKSL  359 (501)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~  359 (501)
                      ||..+.+.+..      +..++.-+.+..++..+++..|+ .+..+|..+.+....+...     -..++.+.+- +|.+
T Consensus       115 yd~~tl~~~~~------~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I  187 (264)
T PF05096_consen  115 YDPNTLKKIGT------FPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKI  187 (264)
T ss_dssp             EETTTTEEEEE------EE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEE
T ss_pred             EccccceEEEE------EecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEE
Confidence            99998755443      34556777888888888888775 8999999888776655432     2235556664 5665


Q ss_pred             EEEEcCC-cEEEEecCCCCCCCCCC---Cccc------ccCcccCeEEEEecCC--eEEEEe
Q 010784          360 ICTGGIG-KAMTWDIRRSQDAVKPQ---PMAE------LDGHVGSVTQLHMDPY--KIVTGG  409 (501)
Q Consensus       360 l~~~~~d-~i~iwd~~~~~~~~~~~---~~~~------~~~h~~~v~~l~~~~~--~~l~~g  409 (501)
                      .|-.-.. .|...|..+++......   ....      ......-.+.|+++|.  +++++|
T Consensus       188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            5555433 37777777766431000   0000      0011456789999987  999997

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.74  Score=43.64  Aligned_cols=201  Identities=15%  Similarity=0.111  Sum_probs=125.3

Q ss_pred             eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC----CcEEEEEcCCCc
Q 010784          261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG----SSVVTIDLRTMQ  336 (501)
Q Consensus       261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~  336 (501)
                      -..+.+++...+.+++...++.|.+.|..+.+.......    ......+.+......++++..    +.+.+.|..+.+
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v----G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV----GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee----ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence            345677765555777777779999999776643322111    112233344445556677654    478899999988


Q ss_pred             eEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCC
Q 010784          337 KVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDD  412 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~d  412 (501)
                      .+........+ ..++++|+|..++... .++ |.+.|........ ........ -......+.++|+  ++.++-..+
T Consensus       152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccc-cCCCCceEEECCCCCEEEEEeccC
Confidence            88775543444 8999999999766666 455 9999977643320 00000111 1233456788888  455554333


Q ss_pred             --CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          413 --LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       413 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                        +.+...|..++.....-..   .+.. ....+.++|+|+.+.+... ..+.+.+-|.....
T Consensus       229 ~~~~v~~id~~~~~v~~~~~~---~~~~-~~~~v~~~p~g~~~yv~~~-~~~~V~vid~~~~~  286 (381)
T COG3391         229 GSNNVLKIDTATGNVTATDLP---VGSG-APRGVAVDPAGKAAYVANS-QGGTVSVIDGATDR  286 (381)
T ss_pred             CCceEEEEeCCCceEEEeccc---cccC-CCCceeECCCCCEEEEEec-CCCeEEEEeCCCCc
Confidence              6899999988777665210   1112 4567899999999988853 34677777755433

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.41  E-value=0.21  Score=46.21  Aligned_cols=135  Identities=12%  Similarity=0.067  Sum_probs=80.0

Q ss_pred             CcEEEEEcCCC----ceEeee--ccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784          325 SSVVTIDLRTM----QKVMTP--AICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQL  398 (501)
Q Consensus       325 ~~i~~~d~~~~----~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  398 (501)
                      +.+.++++...    ..+...  ....++|++++-. ++. ++++....|.+|++...+..   .....+. ....+.++
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l---~~~~~~~-~~~~i~sl  135 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTL---LKKAFYD-SPFYITSL  135 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSE---EEEEEE--BSSSEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccc---hhhheec-ceEEEEEE
Confidence            46888988884    222211  2347889998776 444 66666666999999887621   1112222 23367777


Q ss_pred             EecCCeEEEEecCCCcEEEEeCCC-cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          399 HMDPYKIVTGGRDDLRINIWETDT-GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       399 ~~~~~~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      ....+.+++ |.....+.++.... ...+..+..   ......++++.|-++++.++.+.  .+|.+.++.+..
T Consensus       136 ~~~~~~I~v-gD~~~sv~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~~~i~~D--~~gnl~~l~~~~  203 (321)
T PF03178_consen  136 SVFKNYILV-GDAMKSVSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDEDTIIVGD--KDGNLFVLRYNP  203 (321)
T ss_dssp             EEETTEEEE-EESSSSEEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSSEEEEEE--TTSEEEEEEE-S
T ss_pred             eccccEEEE-EEcccCEEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCcEEEEEc--CCCeEEEEEECC
Confidence            777665554 45667788775543 222222211   12245688888887777777776  679999999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=96.41  E-value=0.013  Score=43.76  Aligned_cols=72  Identities=13%  Similarity=0.202  Sum_probs=53.0

Q ss_pred             cccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCccccCCC-CCcchhHHHHHHHHH
Q 010784           18 TAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGS-LPTVRVREAYLARRI   91 (501)
Q Consensus        18 ~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   91 (501)
                      ..+.++|.+++.-||..+++..|.++..-|-.+..  .++.||++++.+.||....... .....|+..|.+...
T Consensus         2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~--~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~~   74 (109)
T PF06881_consen    2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIE--DTDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLKK   74 (109)
T ss_pred             CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcch--hhHHHHHHHHHhHCcChhhcccccccchHHHHHHHHHH
Confidence            34678999999999999999999999888744433  4789999999999874222111 123468888876443

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.054  Score=50.85  Aligned_cols=147  Identities=13%  Similarity=0.130  Sum_probs=98.2

Q ss_pred             cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCc-
Q 010784          122 DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGS-  197 (501)
Q Consensus       122 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~-  197 (501)
                      ..++.+|.....++-.|++.| +++..++-|.+ |+-+.+.|++....+      +...=+.|-.|..|.-||   .+. 
T Consensus       346 nlil~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql------~~e~TlvGLs~n~vfriDpRv~~~~  417 (644)
T KOG2395|consen  346 NLILMDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQL------TSEQTLVGLSDNSVFRIDPRVQGKN  417 (644)
T ss_pred             ceEeeCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcc------cccccEEeecCCceEEecccccCcc
Confidence            345567777777888899986 88888888877 888888885421111      112223455688888898   333 


Q ss_pred             eeeeccCC----CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeE
Q 010784          198 CQRCFKGH----NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFL  273 (501)
Q Consensus       198 ~~~~~~~h----~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~  273 (501)
                      .+....+|    .....|.+-     ....+++.||.+|.||+||--...      ...-+.+-..+|..|..+. +|..
T Consensus       418 kl~~~q~kqy~~k~nFsc~aT-----T~sG~IvvgS~~GdIRLYdri~~~------AKTAlPgLG~~I~hVdvta-dGKw  485 (644)
T KOG2395|consen  418 KLAVVQSKQYSTKNNFSCFAT-----TESGYIVVGSLKGDIRLYDRIGRR------AKTALPGLGDAIKHVDVTA-DGKW  485 (644)
T ss_pred             eeeeeeccccccccccceeee-----cCCceEEEeecCCcEEeehhhhhh------hhhcccccCCceeeEEeec-cCcE
Confidence            22222222    334566664     456699999999999999984322      3556778889999999996 6666


Q ss_pred             EEEEeCCCeEEEEECC
Q 010784          274 LVTISKDSKVRVWDTS  289 (501)
Q Consensus       274 l~s~s~dg~v~vwd~~  289 (501)
                      ++.. .+..+.+.++.
T Consensus       486 il~T-c~tyLlLi~t~  500 (644)
T KOG2395|consen  486 ILAT-CKTYLLLIDTL  500 (644)
T ss_pred             EEEe-cccEEEEEEEe
Confidence            5544 45677777765

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.37  E-value=0.00067  Score=66.90  Aligned_cols=290  Identities=11%  Similarity=0.038  Sum_probs=145.3

Q ss_pred             eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CCceeeec----
Q 010784          131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KGSCQRCF----  202 (501)
Q Consensus       131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~~~~~~~----  202 (501)
                      .+.+++-+..+..+....++|..+.|-.++|-...         +|.+.     -.-|.+.||+    .|+....+    
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~---------~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~  175 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTK---------CPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTP  175 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccC---------ChHHH-----HHhhhhheeehHhhccccccceEEee
Confidence            45666666665333234567788889899885421         11223     3346788897    44433222    


Q ss_pred             -cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC
Q 010784          203 -KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS  281 (501)
Q Consensus       203 -~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg  281 (501)
                       ..-...+.-+.|+|.- .+.-++..+-.+++|++.+.++..       ...+.+|...+..+++...+-..+..-+-||
T Consensus       176 ~~p~gs~~~~V~wcp~~-~~~~~ic~~~~~~~i~lL~~~ra~-------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG  247 (1283)
T KOG1916|consen  176 ITPYGSDPQLVSWCPIA-VNKVYICYGLKGGEIRLLNINRAL-------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDG  247 (1283)
T ss_pred             cCcCCCCcceeeecccc-cccceeeeccCCCceeEeeechHH-------HHHHHhcCCCcccHHHHhhchhhheeeCCCC
Confidence             2223344556665433 345788888899999998887753       3556678887776665432222333334444


Q ss_pred             eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC-CcEEEEEEcCC----
Q 010784          282 KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK-PILHSFSIMPS----  356 (501)
Q Consensus       282 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~v~~~~~----  356 (501)
                      ++..|-+..|....                             -.+++.+.....++...+.|. ++-.|..++.+    
T Consensus       248 tv~a~a~~dG~v~f-----------------------------~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~  298 (1283)
T KOG1916|consen  248 TVFAWAISDGSVGF-----------------------------YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILV  298 (1283)
T ss_pred             cEEEEeecCCccce-----------------------------eeeeeeccccHhhhhccCCCCCCCceeeeeccccccC
Confidence            44444444331100                             022333333333344444443 22222222221    


Q ss_pred             -----CcEEEEEc-CCc-EEEEecCCCCCCCC--CCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCccc
Q 010784          357 -----KSLICTGG-IGK-AMTWDIRRSQDAVK--PQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGML  425 (501)
Q Consensus       357 -----~~~l~~~~-~d~-i~iwd~~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~  425 (501)
                           -.++++++ .++ +++|.....++...  ...+.....|.+.|+.+....-  .-+++.+-++.|++|.-.....
T Consensus       299 v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~  378 (1283)
T KOG1916|consen  299 VSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQP  378 (1283)
T ss_pred             CccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhh
Confidence                 12455555 455 99999887665410  1112222344455544333222  2234446789999997544322


Q ss_pred             ccccccCCCCCCCcceeee--Eee---ccccEEEEeecCCCceEEEeeccCCccce
Q 010784          426 ANSLLCNYPEEADISTGCS--AMA---VSGCRIVTASYGEPGLLQFRDFSNATCPV  476 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~--~~s---~~g~~l~s~~~d~~g~i~~w~~~~~~~~~  476 (501)
                      ......+.    ..+|.+.  .-|   ++...+.+|+. .+..+.+|-+.-.+..+
T Consensus       379 ~~vs~~~~----~hpV~S~i~v~S~~R~~h~e~~~~~~-~nr~~~i~~s~g~~g~l  429 (1283)
T KOG1916|consen  379 LVVSRPHD----GHPVLSAIFVTSPERPDHIELITGGP-LNRELKIWVSAGEEGWL  429 (1283)
T ss_pred             hhhhhhhh----cceeccccccccCCCccccccccCCc-chhhhhhhhhccccccc
Confidence            22222111    1122221  222   23445555554 56677788766544433

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.36  E-value=0.91  Score=42.61  Aligned_cols=261  Identities=15%  Similarity=0.098  Sum_probs=130.7

Q ss_pred             CcCcEEEEee---------CCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc
Q 010784          176 RTENVLVTSS---------CDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR  245 (501)
Q Consensus       176 ~~~~~l~s~~---------~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  245 (501)
                      ||+++++...         ..+.+.|+| ....+..+......+....|+    |+|+.++-.. ++.|.+++..++.. 
T Consensus         2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~s----P~g~~~~~v~-~~nly~~~~~~~~~-   75 (353)
T PF00930_consen    2 PDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWS----PDGKYIAFVR-DNNLYLRDLATGQE-   75 (353)
T ss_dssp             TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-----SSSTEEEEEE-TTEEEEESSTTSEE-
T ss_pred             CCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceee----cCCCeeEEEe-cCceEEEECCCCCe-
Confidence            4777777632         245677888 333444444346778889997    8899988875 57899998876642 


Q ss_pred             ccccceeeccCC----------------CCceeEEEEeecCCeEEEEEe-CCCeEEEEECCCCccccceecccceecCCC
Q 010784          246 GQQALKATLYGH----------------EKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGV  308 (501)
Q Consensus       246 ~~~~~~~~~~~~----------------~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  308 (501)
                          ...+..+-                -+.-..+-|+| +++.|+... .+..|..+.+........        ....
T Consensus        76 ----~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~--------~yp~  142 (353)
T PF00930_consen   76 ----TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDS--------QYPE  142 (353)
T ss_dssp             ----EESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTE--------SS-E
T ss_pred             ----EEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccc--------cCCc
Confidence                11111110                01124678998 555555544 445555444322111000        0000


Q ss_pred             ceeeecCCCeEEEEeCC-----cEEEEEcCCCceEe-ee----ccCCCcEEEEEEcCCCc-EEEEEc---CCc--EEEEe
Q 010784          309 PVDMKCHESMLYIASGS-----SVVTIDLRTMQKVM-TP----AICKPILHSFSIMPSKS-LICTGG---IGK--AMTWD  372 (501)
Q Consensus       309 ~~~~~~~~~~~~~~~~~-----~i~~~d~~~~~~~~-~~----~~~~~~v~~v~~~~~~~-~l~~~~---~d~--i~iwd  372 (501)
                      ...+      .+--.|.     .+.++|+.+++... ..    ......+..+.|.+++. +++.-.   .+.  +.+.|
T Consensus       143 ~~~~------~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d  216 (353)
T PF00930_consen  143 VESI------RYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCD  216 (353)
T ss_dssp             EEEE------E--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEE
T ss_pred             cccc------ccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEE
Confidence            0000      0000111     57788888876532 11    23356789999999988 444333   222  67778


Q ss_pred             cCCCCCCCCCCCcccccCcccCe---EEEEec-CC--eEEEEecCCCcEEEE--eCCCcccccccccCCCCCCCcce-ee
Q 010784          373 IRRSQDAVKPQPMAELDGHVGSV---TQLHMD-PY--KIVTGGRDDLRINIW--ETDTGMLANSLLCNYPEEADIST-GC  443 (501)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~h~~~v---~~l~~~-~~--~~l~~gs~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v-~~  443 (501)
                      ..++...    .+.. ....+.|   ....+. ++  .++.....||--+|+  +...+. ...+.     ...-.| ..
T Consensus       217 ~~tg~~~----~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT-----~G~~~V~~i  285 (353)
T PF00930_consen  217 ASTGETR----VVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLT-----SGDWEVTSI  285 (353)
T ss_dssp             ECTTTCE----EEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS------SSS-EEEE
T ss_pred             CCCCcee----EEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccc-----cCceeeccc
Confidence            8775532    1111 1112222   244443 44  666665677765555  444443 33442     123345 34


Q ss_pred             eEeeccccEEE-EeecCCCceEEEeeccCC
Q 010784          444 SAMAVSGCRIV-TASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       444 ~~~s~~g~~l~-s~~~d~~g~i~~w~~~~~  472 (501)
                      +.++++++.|. +|..++.+.-.+|.++-.
T Consensus       286 ~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~  315 (353)
T PF00930_consen  286 LGWDEDNNRIYFTANGDNPGERHLYRVSLD  315 (353)
T ss_dssp             EEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred             ceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence            78888877654 444322345555555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.28  E-value=1.2  Score=43.00  Aligned_cols=241  Identities=10%  Similarity=0.085  Sum_probs=119.0

Q ss_pred             ceEEeeCCcEEEeec-----CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          114 DHILLDNNDIFSTQG-----SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       114 ~~~~~~~~~~~~~~g-----~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      ....++|+|.++|.+     +....+++.|+.++......+...  .-..+.|.+             +++.|+....+.
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~-------------d~~~~~y~~~~~  191 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSD-------------DGKGFFYTRFDE  191 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECT-------------TSSEEEEEECST
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeC-------------CCCEEEEEEeCc
Confidence            456788999988743     446789999999873322233221  122389998             666665554333


Q ss_pred             -----------ceEEecCCce----eeeccCCCCc--eEEEEeeecCCCCCCEEEEeeCC----CcEEEEeccCCCcccc
Q 010784          189 -----------SIRLWWKGSC----QRCFKGHNGP--VSTLSDKLLGDGSGKILASGGED----ATVRLWSLSSSGKRGQ  247 (501)
Q Consensus       189 -----------~i~vwd~~~~----~~~~~~h~~~--v~~l~~s~~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~  247 (501)
                                 .|+.|..|..    ...+......  ...+..+    .++++|+..+..    ..+.+.++..+.. ..
T Consensus       192 ~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s----~d~~~l~i~~~~~~~~s~v~~~d~~~~~~-~~  266 (414)
T PF02897_consen  192 DQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS----KDGRYLFISSSSGTSESEVYLLDLDDGGS-PD  266 (414)
T ss_dssp             TTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-----TTSSEEEEEEESSSSEEEEEEEECCCTTT-SS
T ss_pred             ccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec----CcccEEEEEEEccccCCeEEEEeccccCC-Cc
Confidence                       2566663322    2334433333  4566665    788887754332    3467777776410 00


Q ss_pred             ccceeeccCCCCcee-EEEEeecCCeEEEEEe---CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe
Q 010784          248 QALKATLYGHEKPIK-LMSVAGHKSFLLVTIS---KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS  323 (501)
Q Consensus       248 ~~~~~~~~~~~~~v~-~l~~~~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (501)
                       .....+......+. .+...  ++.+++...   ..+.|...++...........+...........+....+.+++..
T Consensus       267 -~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~  343 (414)
T PF02897_consen  267 -AKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSY  343 (414)
T ss_dssp             --SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEE
T ss_pred             -CCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEE
Confidence             01223332333333 33333  444444432   346777778777653111111111011123444555555555543


Q ss_pred             --CC--cEEEEEcCCCceEeeec-cCCCcEEEEEEcCCCc-EEE-EEcCCc---EEEEecCCCC
Q 010784          324 --GS--SVVTIDLRTMQKVMTPA-ICKPILHSFSIMPSKS-LIC-TGGIGK---AMTWDIRRSQ  377 (501)
Q Consensus       324 --~~--~i~~~d~~~~~~~~~~~-~~~~~v~~v~~~~~~~-~l~-~~~~d~---i~iwd~~~~~  377 (501)
                        ++  .|.++++..+....... ...+.|..+...+++. +.+ ..+--.   +..||+.+++
T Consensus       344 ~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  344 RENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             EECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence              22  78999998333333333 2345566666555543 222 333222   7777877765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.23  E-value=0.74  Score=41.78  Aligned_cols=189  Identities=15%  Similarity=0.060  Sum_probs=110.1

Q ss_pred             EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc--
Q 010784          266 VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI--  343 (501)
Q Consensus       266 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--  343 (501)
                      |.+..+.++.+--..+.|.-|+..+++...      ...+.........+....++++...+.+++.+++..+..+..  
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~------~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKRV------FPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceEE------EECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEecccc
Confidence            454444456666667888888887653211      112222234445567778888888888998876666322221  


Q ss_pred             ---CCCcEEEEEEcCCCcEEEEEcC---------Cc-EEEEecC-CCCCCCCCCCcccccCcccCeEEEEecCC--eEEE
Q 010784          344 ---CKPILHSFSIMPSKSLICTGGI---------GK-AMTWDIR-RSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVT  407 (501)
Q Consensus       344 ---~~~~v~~v~~~~~~~~l~~~~~---------d~-i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~  407 (501)
                         .....+.+...|+|.+.++...         .. -.+|-+. .+..      +..+..+-..-+.|+|||+  .+++
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~------~~l~~~~~~~~NGla~SpDg~tly~  179 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV------VRLLDDDLTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE------EEeecCcEEecCceEECCCCCEEEE
Confidence               1234567888999988776555         11 2344444 2222      2444445556789999999  6666


Q ss_pred             EecCCCcEEEEeCCC--cccccc---cccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          408 GGRDDLRINIWETDT--GMLANS---LLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       408 ~gs~dg~i~iwd~~~--~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +=+..+.|.-|++..  +..-..   +..   ....+..-.++...+|.+.+++.. ..+.|.+|+-.
T Consensus       180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~---~~~~G~PDG~~vDadG~lw~~a~~-~g~~v~~~~pd  243 (307)
T COG3386         180 ADTPANRIHRYDLDPATGPIGGRRGFVDF---DEEPGLPDGMAVDADGNLWVAAVW-GGGRVVRFNPD  243 (307)
T ss_pred             EeCCCCeEEEEecCcccCccCCcceEEEc---cCCCCCCCceEEeCCCCEEEeccc-CCceEEEECCC
Confidence            666678899888763  211111   110   112344556777888887765442 22378887754

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.22  E-value=0.016  Score=35.34  Aligned_cols=34  Identities=12%  Similarity=0.162  Sum_probs=29.5

Q ss_pred             ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccc
Q 010784          392 VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLA  426 (501)
Q Consensus       392 ~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~  426 (501)
                      ...|..++|+|. .++|.|+.+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            456999999999 99999999999999998 56543

>PHA03098 kelch-like protein; Provisional

Probab=96.07  E-value=0.7  Score=46.27  Aligned_cols=186  Identities=16%  Similarity=0.130  Sum_probs=87.6

Q ss_pred             CCCEEEEeeCCC------cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECC
Q 010784          221 SGKILASGGEDA------TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTS  289 (501)
Q Consensus       221 ~~~~l~sg~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~  289 (501)
                      ++.+++.|+.++      .+..||..+..-    .....+....... ++...  ++.+++.||.+     ..+..||..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~~R~~~-~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~  366 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW----NKVPELIYPRKNP-GVTVF--NNRIYVIGGIYNSISLNTVESWKPG  366 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCee----eECCCCCcccccc-eEEEE--CCEEEEEeCCCCCEecceEEEEcCC
Confidence            556777776543      466777766542    1111111111111 22222  66788888765     346778887


Q ss_pred             CCccccceecccceecCCCceeeecCCCeEEEEeC--------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcE
Q 010784          290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSL  359 (501)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~  359 (501)
                      +.+....    .....+....+....++.+++..|        ..+..||..+.+-...  +....... ++ ...++.+
T Consensus       367 ~~~W~~~----~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~i  440 (534)
T PHA03098        367 ESKWREE----PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKI  440 (534)
T ss_pred             CCceeeC----CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEE
Confidence            7654221    111111111222333455555544        2577888876543221  11111111 22 2235677


Q ss_pred             EEEEcCC--------c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCcc
Q 010784          360 ICTGGIG--------K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGM  424 (501)
Q Consensus       360 l~~~~~d--------~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~  424 (501)
                      ++.|+.+        . +.+||..+.+-    ..+..+....... +++...+++++.|+.+     ..|.+||..+.+
T Consensus       441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        441 YVIGGISYIDNIKVYNIVESYNPVTNKW----TELSSLNFPRINA-SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             EEECCccCCCCCcccceEEEecCCCCce----eeCCCCCcccccc-eEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            7777631        2 78888877542    1122221111111 2222244666665543     467888877643

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.05  E-value=0.76  Score=38.78  Aligned_cols=95  Identities=5%  Similarity=-0.019  Sum_probs=58.4

Q ss_pred             EEEEEEcCCCcEEEEEc-CCc-EEEEe--cCCCCCCCCCCCcccccC---c-ccCeEEEEecCC-eEEEEecCCCcEEEE
Q 010784          348 LHSFSIMPSKSLICTGG-IGK-AMTWD--IRRSQDAVKPQPMAELDG---H-VGSVTQLHMDPY-KIVTGGRDDLRINIW  418 (501)
Q Consensus       348 v~~v~~~~~~~~l~~~~-~d~-i~iwd--~~~~~~~~~~~~~~~~~~---h-~~~v~~l~~~~~-~~l~~gs~dg~i~iw  418 (501)
                      -+.++|+.+.+.+.... .+. |.-||  ..++.... ++.+..++.   . ....-.++++.+ .+.++.-..++|...
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-r~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-RKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccC-cceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence            45788887766555444 444 76677  55554321 111222221   0 111223444555 666666688999999


Q ss_pred             eCCCcccccccccCCCCCCCcceeeeEeec
Q 010784          419 ETDTGMLANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                      |..+|+.+.++.     -....|++++|--
T Consensus       239 dp~tGK~L~eik-----lPt~qitsccFgG  263 (310)
T KOG4499|consen  239 DPTTGKILLEIK-----LPTPQITSCCFGG  263 (310)
T ss_pred             CCCCCcEEEEEE-----cCCCceEEEEecC
Confidence            999999999994     3466799999964

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.84  E-value=1.8  Score=41.99  Aligned_cols=162  Identities=11%  Similarity=0.042  Sum_probs=88.8

Q ss_pred             CCcceeEEEeeccCcCcccccCCCCcCcEEEEee---CCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784          152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSS---CDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG  228 (501)
Q Consensus       152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg  228 (501)
                      --.+|..++|.              ||+.++-..   .+|.+++=|. +.+    +.-..|..+.|.|....+-..+.+.
T Consensus        18 AiHPvhGlaWT--------------DGkqVvLT~L~l~~gE~kfGds-~vi----GqFEhV~GlsW~P~~~~~~paLLAV   78 (671)
T PF15390_consen   18 AIHPVHGLAWT--------------DGKQVVLTDLQLHNGEPKFGDS-KVI----GQFEHVHGLSWAPPCTADTPALLAV   78 (671)
T ss_pred             hhccccceEec--------------CCCEEEEEeeeeeCCccccCCc-cEe----eccceeeeeeecCcccCCCCceEEE
Confidence            34589999997              566665433   2344433221 122    3445689999987665556566666


Q ss_pred             eCCCcEEEEeccCCCc-cccccceeeccC-CCCc--eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784          229 GEDATVRLWSLSSSGK-RGQQALKATLYG-HEKP--IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       229 ~~dg~i~iwd~~~~~~-~~~~~~~~~~~~-~~~~--v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                      .....|.||.+..... ..+....++-.- ..-+  -....|+|. ...|+.-.....-.+++++....           
T Consensus        79 QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT~~dvSV~~sV~~d~s-----------  146 (671)
T PF15390_consen   79 QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLTARDVSVLPSVHCDSS-----------  146 (671)
T ss_pred             eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEecCceeEeeeeeeCCc-----------
Confidence            7788999999873221 011111111110 0111  134567773 44444443333333445443211           


Q ss_pred             cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCC
Q 010784          305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRS  376 (501)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~  376 (501)
                                                     +....+ ...+-|.|.+|.+||+.|+++-...  -++||-...
T Consensus       147 -------------------------------rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  147 -------------------------------RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             -------------------------------eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence                                           011112 1367799999999998887776555  888986543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.82  E-value=1.7  Score=41.69  Aligned_cols=166  Identities=14%  Similarity=0.069  Sum_probs=91.5

Q ss_pred             CceeeeccCCCCceEEEEeeecCCCCCCEEEEee---CC-CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC
Q 010784          196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG---ED-ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS  271 (501)
Q Consensus       196 ~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  271 (501)
                      +.....+..-...+..-+|+    +++..++--+   .. ..+.+++++++..    ..+..+.++..   .-+|+|++.
T Consensus       182 g~~~~~l~~~~~~~~~p~ws----~~~~~~~y~~f~~~~~~~i~~~~l~~g~~----~~i~~~~g~~~---~P~fspDG~  250 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWS----PDGKKLAYVSFELGGCPRIYYLDLNTGKR----PVILNFNGNNG---APAFSPDGS  250 (425)
T ss_pred             CcceeEecccCcceeccccC----cCCCceEEEEEecCCCceEEEEeccCCcc----ceeeccCCccC---CccCCCCCC
Confidence            33444444444455555665    5555544321   22 4689999998764    22333444444   347998666


Q ss_pred             eEEEEEeCCCe--EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC----cEEEEEcCCCceEeeeccCC
Q 010784          272 FLLVTISKDSK--VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS----SVVTIDLRTMQKVMTPAICK  345 (501)
Q Consensus       272 ~~l~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~d~~~~~~~~~~~~~~  345 (501)
                      .++++...||.  |.++|+.+++..+   ......... .-.+..+++.++.+++.    .|.+++.+............
T Consensus       251 ~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~  326 (425)
T COG0823         251 KLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG  326 (425)
T ss_pred             EEEEEECCCCCccEEEEcCCCCccee---cccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC
Confidence            66777777776  5556777665222   111111111 22333344445555542    78888888776533222212


Q ss_pred             CcEEEEEEcCCCcEEEEEc--CCc--EEEEecCCCC
Q 010784          346 PILHSFSIMPSKSLICTGG--IGK--AMTWDIRRSQ  377 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~--~d~--i~iwd~~~~~  377 (501)
                      .. ..-.++|||++++..+  .+.  |.+.|+.++.
T Consensus       327 ~~-~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         327 GN-SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CC-cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            22 2677899999988777  333  6677776653

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.70  E-value=2.6  Score=42.12  Aligned_cols=180  Identities=11%  Similarity=0.059  Sum_probs=91.3

Q ss_pred             CCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784          187 DHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS  265 (501)
Q Consensus       187 dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  265 (501)
                      --.|+|++ .|..+..+.-..+.+..|.|+     +...|++...+|+++++++.......   ...-.......|....
T Consensus        63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgWs-----~~eeLI~v~k~g~v~Vy~~~ge~ie~---~svg~e~~~~~I~ec~  134 (829)
T KOG2280|consen   63 RPYIRIFNISGQLLGRILWKHGELIGMGWS-----DDEELICVQKDGTVHVYGLLGEFIES---NSVGFESQMSDIVECR  134 (829)
T ss_pred             ceeEEEEeccccchHHHHhcCCCeeeeccc-----CCceEEEEeccceEEEeecchhhhcc---cccccccccCceeEEE
Confidence            34688999 888887765545588899995     56777778999999999987643200   0001122233344444


Q ss_pred             EeecCCeEEEEEeCCCeEEEE-ECCCCccccceecccceecCCCceeeecCCCe--EEEEeC----CcEEEEEcCCCceE
Q 010784          266 VAGHKSFLLVTISKDSKVRVW-DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIASG----SSVVTIDLRTMQKV  338 (501)
Q Consensus       266 ~~~~~~~~l~s~s~dg~v~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~i~~~d~~~~~~~  338 (501)
                      +.. +|-.+++.  +|.+.+- +.... .............+...+.+...+..  ..+..+    -.+...+....+. 
T Consensus       135 ~f~-~GVavlt~--~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~-  209 (829)
T KOG2280|consen  135 FFH-NGVAVLTV--SGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQL-  209 (829)
T ss_pred             Eec-CceEEEec--CCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccc-
Confidence            442 45444443  3444433 33221 11111111111111122222222111  111111    1111111111111 


Q ss_pred             eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                      ..+......+..+..||+.++|+--...+ |.+-+....+..
T Consensus       210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l  251 (829)
T KOG2280|consen  210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL  251 (829)
T ss_pred             cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence            22222246678899999999999888777 888887765543

>PHA03098 kelch-like protein; Provisional

Probab=95.65  E-value=1.3  Score=44.48  Aligned_cols=144  Identities=14%  Similarity=0.105  Sum_probs=70.5

Q ss_pred             CCCEEEEeeCC-----CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEECC
Q 010784          221 SGKILASGGED-----ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDTS  289 (501)
Q Consensus       221 ~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~~  289 (501)
                      ++.+++.|+.+     ..+..||..++.-    .....+...... .+++..  ++.+++.|+.+      ..+..||..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W----~~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~  414 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKW----REEPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLN  414 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCce----eeCCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCC
Confidence            56777777765     3466788776542    111111111111 122222  56777777732      457889988


Q ss_pred             CCccccceecccceecCCCceeeecCCCeEEEEeCC----------cEEEEEcCCCceEee--eccCCCcEEEEEEcCCC
Q 010784          290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS----------SVVTIDLRTMQKVMT--PAICKPILHSFSIMPSK  357 (501)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~  357 (501)
                      +.+.....    .........++...++.+++..|.          .+..||..+.+-...  +.........+.+  ++
T Consensus       415 t~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~  488 (534)
T PHA03098        415 TNKWSKGS----PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NN  488 (534)
T ss_pred             CCeeeecC----CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CC
Confidence            76542211    111111111223334455555442          277888877653321  1111111122222  67


Q ss_pred             cEEEEEcCC-----c-EEEEecCCCC
Q 010784          358 SLICTGGIG-----K-AMTWDIRRSQ  377 (501)
Q Consensus       358 ~~l~~~~~d-----~-i~iwd~~~~~  377 (501)
                      ++++.|+.+     . +.+||..+.+
T Consensus       489 ~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        489 KIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             EEEEEcCCcCCcccceeEEEeCCCCE
Confidence            777777743     3 8888887653

>PF13013 F-box-like_2: F-box-like domain

Probab=95.62  E-value=0.017  Score=42.57  Aligned_cols=33  Identities=9%  Similarity=0.148  Sum_probs=29.5

Q ss_pred             ccccccHHHHHHHHhcCChhhhHHHHhhChhHH
Q 010784           19 AIADLNEDAVAHCALNLSLQDISNMAMSCKLFK   51 (501)
Q Consensus        19 ~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~   51 (501)
                      .+.+||.|++..||.|++..++..+.+.|+..+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r   53 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYR   53 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            588999999999999999999999999988333

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.53  E-value=0.66  Score=43.36  Aligned_cols=202  Identities=16%  Similarity=0.135  Sum_probs=89.8

Q ss_pred             CCeEEEEEe-CCCeEEEEECCCCccccc-eecccc---e--ecCCCceeeecCCCe-EEEEe-C-------CcEEEEEcC
Q 010784          270 KSFLLVTIS-KDSKVRVWDTSTSSAVRS-SCCVGM---T--SVPGVPVDMKCHESM-LYIAS-G-------SSVVTIDLR  333 (501)
Q Consensus       270 ~~~~l~s~s-~dg~v~vwd~~~~~~~~~-~~~~~~---~--~~~~~~~~~~~~~~~-~~~~~-~-------~~i~~~d~~  333 (501)
                      +.++|+..+ ..+.|+|.|+.+...... .+....   .  .--..+-...+-+++ +++.+ +       +.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345666665 778999999985432111 011000   0  011122233333433 33322 1       268888888


Q ss_pred             CCceEeeeccC---CCcEEEEEEcCCCcEEEEEcC--------------------Cc-EEEEecCCCCCCCCCCCccccc
Q 010784          334 TMQKVMTPAIC---KPILHSFSIMPSKSLICTGGI--------------------GK-AMTWDIRRSQDAVKPQPMAELD  389 (501)
Q Consensus       334 ~~~~~~~~~~~---~~~v~~v~~~~~~~~l~~~~~--------------------d~-i~iwd~~~~~~~~~~~~~~~~~  389 (501)
                      +.+........   ...-+.+-+.|..+.+++...                    +. +.+||+.+.+.+      +++.
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~------Q~id  239 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL------QTID  239 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE------EEEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe------eEEe
Confidence            87777655543   223467777888777777642                    55 999999996654      5554


Q ss_pred             Ccc--cCeEEEEe--cCC--eEEEEecCCCcEEEEeC-CCcc----cccccccCCCCC------------CCcceeeeEe
Q 010784          390 GHV--GSVTQLHM--DPY--KIVTGGRDDLRINIWET-DTGM----LANSLLCNYPEE------------ADISTGCSAM  446 (501)
Q Consensus       390 ~h~--~~v~~l~~--~~~--~~l~~gs~dg~i~iwd~-~~~~----~~~~~~~~~~~~------------~~~~v~~~~~  446 (501)
                      --.  ..+..|.|  +|+  .-++++...++|-.|-- ..++    .+..+......+            -..-|+.+.+
T Consensus       240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i  319 (461)
T PF05694_consen  240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI  319 (461)
T ss_dssp             S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred             cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence            322  23445555  454  33333335555554433 3221    111221100000            0234789999


Q ss_pred             eccccEEEEeecCCCceEEEeeccCCccceee
Q 010784          447 AVSGCRIVTASYGEPGLLQFRDFSNATCPVLK  478 (501)
Q Consensus       447 s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s  478 (501)
                      |.|.++|..... ..|.|+.||++.+.++..+
T Consensus       320 SlDDrfLYvs~W-~~GdvrqYDISDP~~Pkl~  350 (461)
T PF05694_consen  320 SLDDRFLYVSNW-LHGDVRQYDISDPFNPKLV  350 (461)
T ss_dssp             -TTS-EEEEEET-TTTEEEEEE-SSTTS-EEE
T ss_pred             ccCCCEEEEEcc-cCCcEEEEecCCCCCCcEE
Confidence            999999999888 7899999999987776543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.50  E-value=2.3  Score=40.29  Aligned_cols=190  Identities=19%  Similarity=0.155  Sum_probs=116.4

Q ss_pred             cCc-EEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC---CCcEEEEeccCCCccccccc
Q 010784          177 TEN-VLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE---DATVRLWSLSSSGKRGQQAL  250 (501)
Q Consensus       177 ~~~-~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~  250 (501)
                      .++ ..++...++.|.+.|  ..+.......-. .-..+++.    ++++.++.+..   ++++.+.|-.+...      
T Consensus        84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~----~~~~~vYV~n~~~~~~~vsvid~~t~~~------  152 (381)
T COG3391          84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVD----PDGKYVYVANAGNGNNTVSVIDAATNKV------  152 (381)
T ss_pred             CCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEEC----CCCCEEEEEecccCCceEEEEeCCCCeE------
Confidence            455 566666678999998  333333332212 44567775    77877776665   67888888877663      


Q ss_pred             eeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce--eeecCCCeEEEEeCC---
Q 010784          251 KATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV--DMKCHESMLYIASGS---  325 (501)
Q Consensus       251 ~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---  325 (501)
                      ......-..+ ..+++.|.....+++-..++.|.+.|.......+ ............+.  .+..+....+++...   
T Consensus       153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~  230 (381)
T COG3391         153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS  230 (381)
T ss_pred             EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence            4443333344 7889998544456666688999999977664432 11111122223333  344455556666543   


Q ss_pred             -cEEEEEcCCCceEee-eccCCCcEEEEEEcCCCcEEEEEcCC-c-EEEEecCCCCCC
Q 010784          326 -SVVTIDLRTMQKVMT-PAICKPILHSFSIMPSKSLICTGGIG-K-AMTWDIRRSQDA  379 (501)
Q Consensus       326 -~i~~~d~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~d-~-i~iwd~~~~~~~  379 (501)
                       .+...|..++..... ..........+..+|+|..+.+.... + +.+.|..+....
T Consensus       231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~  288 (381)
T COG3391         231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV  288 (381)
T ss_pred             ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence             677788877776654 22211145678999999998888533 4 999998886543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.39  E-value=0.047  Score=33.31  Aligned_cols=29  Identities=21%  Similarity=0.520  Sum_probs=26.3

Q ss_pred             CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec
Q 010784          153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW  194 (501)
Q Consensus       153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  194 (501)
                      ...|.+++|+|             ..++||.|..+|.|.++.
T Consensus        11 ~~~v~~~~w~P-------------~mdLiA~~t~~g~v~v~R   39 (47)
T PF12894_consen   11 PSRVSCMSWCP-------------TMDLIALGTEDGEVLVYR   39 (47)
T ss_pred             CCcEEEEEECC-------------CCCEEEEEECCCeEEEEE
Confidence            45699999999             789999999999999987

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.30  E-value=2.6  Score=39.59  Aligned_cols=233  Identities=8%  Similarity=0.022  Sum_probs=93.4

Q ss_pred             CCCEEEEee-CCCcEEEEeccCCCccccccceeeccC---CC----CceeEEEEeecCCeEEEEEeC------CCeEEEE
Q 010784          221 SGKILASGG-EDATVRLWSLSSSGKRGQQALKATLYG---HE----KPIKLMSVAGHKSFLLVTISK------DSKVRVW  286 (501)
Q Consensus       221 ~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~----~~v~~l~~~~~~~~~l~s~s~------dg~v~vw  286 (501)
                      +.++|+..+ ..+.|.|.|+.+....++  +.+.+..   +.    ..-..+...| ++.+++++-.      -|.+.+.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~--l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~ll  162 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPR--LHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLL  162 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-E--EEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCc--eEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEE
Confidence            455666655 778999999986543222  2222221   11    1111222333 5667777522      2557777


Q ss_pred             ECCCCccccceecccceecCCCceeeecCCCeEEEE-----------------------eCCcEEEEEcCCCceEeeecc
Q 010784          287 DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA-----------------------SGSSVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~i~~~d~~~~~~~~~~~~  343 (501)
                      |-++.+..........  .....+.+-+.+...++.                       -|..+.+||+.+.+.++++..
T Consensus       163 D~~tf~v~g~We~~~~--~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  163 DGETFEVKGRWEKDRG--PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             -TTT--EEEE--SB-T--T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred             cCccccccceeccCCC--CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence            7776554433222111  011112222222211111                       134799999999999998875


Q ss_pred             CCC--cEEEEEEcCC--CcEEEEEc--CCc-EEEEecCCCCCCC------C---------CCCcccccCcccCeEEEEec
Q 010784          344 CKP--ILHSFSIMPS--KSLICTGG--IGK-AMTWDIRRSQDAV------K---------PQPMAELDGHVGSVTQLHMD  401 (501)
Q Consensus       344 ~~~--~v~~v~~~~~--~~~l~~~~--~d~-i~iwd~~~~~~~~------~---------~~~~~~~~~h~~~v~~l~~~  401 (501)
                      ...  ....+.|..+  ..+=.+|+  ... .++|....++-..      .         +..+..+..-..-|+.|.+|
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence            433  3556777544  44433333  344 4444433332110      0         01111122223457899999


Q ss_pred             CC--eEEEEecCCCcEEEEeCCCc---ccccccccCCC-----------CCCCcceeeeEeeccccEEEEeec
Q 010784          402 PY--KIVTGGRDDLRINIWETDTG---MLANSLLCNYP-----------EEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       402 ~~--~~l~~gs~dg~i~iwd~~~~---~~~~~~~~~~~-----------~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      .+  .+.+++=.+|.|+.||+...   ++..++..+..           ..-.+...-+..|-||+.|...++
T Consensus       321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            88  55566668999999999763   23322211100           001122355788999998887653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.25  E-value=1.6  Score=36.91  Aligned_cols=107  Identities=14%  Similarity=0.048  Sum_probs=67.4

Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEE--CCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWD--TSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      +.++|+.+...+.++-+.+-+|.-||  ..++....                              .-.++|+++.+...
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn------------------------------r~~i~dlrk~~~~e  210 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN------------------------------RKVIFDLRKSQPFE  210 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccC------------------------------cceeEEeccCCCcC
Confidence            56777753445556667777887787  55553211                              22355555543322


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC---eEEEEe
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGG  409 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~g  409 (501)
                      ....     -.+++..+|.+.++.-.++ |.-.|..+++.+      .++.-....|++++|-..   -+.+++
T Consensus       211 ~~~P-----DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L------~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  211 SLEP-----DGMTIDTEGNLYVATFNGGTVQKVDPTTGKIL------LEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CCCC-----CcceEccCCcEEEEEecCcEEEEECCCCCcEE------EEEEcCCCceEEEEecCCCccEEEEEe
Confidence            2211     2344456788888888777 999999998765      777766889999999643   444444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.09  E-value=2.1  Score=37.41  Aligned_cols=205  Identities=12%  Similarity=0.144  Sum_probs=106.7

Q ss_pred             CCCCEEEEeeC-----CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEE-ECCCCcc
Q 010784          220 GSGKILASGGE-----DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVW-DTSTSSA  293 (501)
Q Consensus       220 ~~~~~l~sg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vw-d~~~~~~  293 (501)
                      ++|.+|+..-.     -|.|-|||.+.+-+     .+..+..|.-.-..+.+.+ ++..++.+.  |-|..- |....+ 
T Consensus       123 ~dG~~LYATEndfd~~rGViGvYd~r~~fq-----rvgE~~t~GiGpHev~lm~-DGrtlvvan--GGIethpdfgR~~-  193 (366)
T COG3490         123 PDGRLLYATENDFDPNRGVIGVYDAREGFQ-----RVGEFSTHGIGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTE-  193 (366)
T ss_pred             CCCcEEEeecCCCCCCCceEEEEecccccc-----eecccccCCcCcceeEEec-CCcEEEEeC--CceecccccCccc-
Confidence            89999987533     37899999986543     4566777766666778886 676666553  334433 211110 


Q ss_pred             ccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe--eec--cCCCcEEEEEEcCCCcEEEEEc-----
Q 010784          294 VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM--TPA--ICKPILHSFSIMPSKSLICTGG-----  364 (501)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~--~~~~~v~~v~~~~~~~~l~~~~-----  364 (501)
                                      +.+..        ..-++.+.|..+++.+.  ++.  .+.-.|..++..+||..++.+-     
T Consensus       194 ----------------lNlds--------MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~  249 (366)
T COG3490         194 ----------------LNLDS--------MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR  249 (366)
T ss_pred             ----------------cchhh--------cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC
Confidence                            00000        00134445555555543  222  3455677888888887666543     


Q ss_pred             CCc-EEEEecCCCCCCCC-CCCcccccCcccCeEEEEecCC-eEE-EEecCCCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784          365 IGK-AMTWDIRRSQDAVK-PQPMAELDGHVGSVTQLHMDPY-KIV-TGGRDDLRINIWETDTGMLANSLLCNYPEEADIS  440 (501)
Q Consensus       365 ~d~-i~iwd~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~-~~l-~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  440 (501)
                      +|. -.+=-.+.++.+.. ..+-.+.......|-+++.+.+ .++ +++-..+...+||..+|..+..-...       .
T Consensus       250 ~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-------d  322 (366)
T COG3490         250 NDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-------D  322 (366)
T ss_pred             ccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-------c
Confidence            122 11111122221100 0000111122456788888876 444 44434556789999999887655211       1


Q ss_pred             eeeeEeeccccEEEEeecCCCceEEEee
Q 010784          441 TGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       441 v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      ...  .-+.+.-+++.+  ..|.+.+++
T Consensus       323 aaG--va~~~~gf~vss--g~G~~~~~s  346 (366)
T COG3490         323 AAG--VAAAKGGFAVSS--GQGRIIFYS  346 (366)
T ss_pred             ccc--ceeccCceEEec--CCceEEecc
Confidence            112  223333344444  348888774

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.06  E-value=1.5  Score=38.30  Aligned_cols=154  Identities=11%  Similarity=0.086  Sum_probs=91.6

Q ss_pred             EeeCCcEEEeecCC-----eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          117 LLDNNDIFSTQGSS-----IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       117 ~~~~~~~~~~~g~~-----d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      +|++||.+|...-.     .|.|-|||...+.+.+-.+..|.-.-..+.+.+             ||+.++.+.  |-|.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-------------DGrtlvvan--GGIe  184 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-------------DGRTLVVAN--GGIE  184 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec-------------CCcEEEEeC--Ccee
Confidence            58899999875544     489999999977777778888888888999998             888888764  3333


Q ss_pred             Ee--------------------c--CCceee--ecc--CCCCceEEEEeeecCCCCCCEEEEeeCCCcE-----EEEecc
Q 010784          192 LW--------------------W--KGSCQR--CFK--GHNGPVSTLSDKLLGDGSGKILASGGEDATV-----RLWSLS  240 (501)
Q Consensus       192 vw--------------------d--~~~~~~--~~~--~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i-----~iwd~~  240 (501)
                      .-                    |  ++..+.  ++.  .+.-.|..++.    ..+|..++.+-..|.-     .+=...
T Consensus       185 thpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~----g~dgtvwfgcQy~G~~~d~ppLvg~~~  260 (366)
T COG3490         185 THPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI----GRDGTVWFGCQYRGPRNDLPPLVGHFR  260 (366)
T ss_pred             cccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeee----CCCCcEEEEEEeeCCCccCCcceeecc
Confidence            33                    2  222221  122  23445666665    3556555544332210     000011


Q ss_pred             CCCccccccceeec-------cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc
Q 010784          241 SSGKRGQQALKATL-------YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR  295 (501)
Q Consensus       241 ~~~~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~  295 (501)
                      .++      .+..+       ......|-+|+.+..++-..+|+-..+...+||..++..+.
T Consensus       261 ~g~------~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~  316 (366)
T COG3490         261 KGE------PLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS  316 (366)
T ss_pred             CCC------cCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence            111      11111       11234566778875556566666666778899999997644

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.05  E-value=2.2  Score=37.47  Aligned_cols=207  Identities=13%  Similarity=0.033  Sum_probs=118.5

Q ss_pred             CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEE
Q 010784          205 HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVR  284 (501)
Q Consensus       205 h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~  284 (501)
                      -.+-+..+.++      +++++.+..+.-++|.|+.+...+   +.+..+. ..+.-.++.+   .+++...+..|.-+.
T Consensus        85 ~~~l~~Dv~vs------e~yvyvad~ssGL~IvDIS~P~sP---~~~~~ln-t~gyaygv~v---sGn~aYVadlddgfL  151 (370)
T COG5276          85 ARDLFADVRVS------EEYVYVADWSSGLRIVDISTPDSP---TLIGFLN-TDGYAYGVYV---SGNYAYVADLDDGFL  151 (370)
T ss_pred             hhhhhheeEec------ccEEEEEcCCCceEEEeccCCCCc---ceecccc-CCceEEEEEe---cCCEEEEeeccCcEE
Confidence            34556677774      568888888889999999987651   1122222 2234445555   466787787676778


Q ss_pred             EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784          285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG  364 (501)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  364 (501)
                      +.|+.+.+...                                         ..-...........++.|  |++-..+.
T Consensus       152 ivdvsdpssP~-----------------------------------------lagrya~~~~d~~~v~IS--Gn~AYvA~  188 (370)
T COG5276         152 IVDVSDPSSPQ-----------------------------------------LAGRYALPGGDTHDVAIS--GNYAYVAW  188 (370)
T ss_pred             EEECCCCCCce-----------------------------------------eeeeeccCCCCceeEEEe--cCeEEEEE
Confidence            88987754211                                         111112222223455554  55666665


Q ss_pred             CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784          365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG  442 (501)
Q Consensus       365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  442 (501)
                      .|+ +.+-|+.+....   ..+... .....+.++..+++ .+++.  .+--+.+-|..+.+....+-.-+ ......++
T Consensus       189 ~d~GL~ivDVSnp~sP---vli~~~-n~g~g~~sv~vsdnr~y~vv--y~egvlivd~s~~ssp~~~gsye-t~~p~~~s  261 (370)
T COG5276         189 RDGGLTIVDVSNPHSP---VLIGSY-NTGPGTYSVSVSDNRAYLVV--YDEGVLIVDVSGPSSPTVFGSYE-TSNPVSIS  261 (370)
T ss_pred             eCCCeEEEEccCCCCC---eEEEEE-ecCCceEEEEecCCeeEEEE--cccceEEEecCCCCCceEeeccc-cCCccccc
Confidence            555 999999987653   111111 12337889999999 55554  34457788877655444442111 11112222


Q ss_pred             eeEeeccccEEEEeecCCCceEEEeeccCCccceee
Q 010784          443 CSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLK  478 (501)
Q Consensus       443 ~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s  478 (501)
                        .+.-.+++...+-  .+.-+-+-|++++..+.++
T Consensus       262 --~v~Vs~~~~Yvad--ga~gl~~idisnp~spfl~  293 (370)
T COG5276         262 --TVPVSGEYAYVAD--GAKGLPIIDISNPPSPFLS  293 (370)
T ss_pred             --ceecccceeeeec--cccCceeEeccCCCCCchh
Confidence              3444566666655  3466777788887776663

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.84  E-value=0.0079  Score=59.77  Aligned_cols=173  Identities=16%  Similarity=0.176  Sum_probs=99.2

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      |..+-|-++..++..|..++.+++-.+.+  .....+.+|...+..++|...|-.  .-...+|||..|++++.||.++.
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~--~l~~lSpDGtv~a~a~~dG~v~f  261 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVL--KLASLSPDGTVFAWAISDGSVGF  261 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchh--hheeeCCCCcEEEEeecCCccce
Confidence            44444556778888999999999988774  344667789999999998764432  22236789999999999999999


Q ss_pred             ec---CC----ceeeeccCCC-CceEEEEeeecC-----CCCCCEEEEee-CCCcEEEEeccCCCcc--ccccceeeccC
Q 010784          193 WW---KG----SCQRCFKGHN-GPVSTLSDKLLG-----DGSGKILASGG-EDATVRLWSLSSSGKR--GQQALKATLYG  256 (501)
Q Consensus       193 wd---~~----~~~~~~~~h~-~~v~~l~~s~~~-----~~~~~~l~sg~-~dg~i~iwd~~~~~~~--~~~~~~~~~~~  256 (501)
                      |.   +|    .|+...+.|. ++-.|.-|+-..     -+.-.++++++ .+..+++|.-..-.+.  .....+.....
T Consensus       262 ~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p  341 (1283)
T KOG1916|consen  262 YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGP  341 (1283)
T ss_pred             eeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecC
Confidence            95   33    4555566676 444444343000     00112344443 4556888876543320  00001122223


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECC
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS  289 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~  289 (501)
                      |.+.|+.+.....--..+++-+.++.|.+|--+
T Consensus       342 ~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~  374 (1283)
T KOG1916|consen  342 HDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR  374 (1283)
T ss_pred             CCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence            444443322211111134455667778887543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.78  E-value=3.5  Score=38.33  Aligned_cols=245  Identities=16%  Similarity=0.039  Sum_probs=100.1

Q ss_pred             CCceeeeccCCCCceEEEEeee-cCCCCCC-EEEEeeCCC--cEEEEeccCCCccccccceeeccCCC-CceeEEEEeec
Q 010784          195 KGSCQRCFKGHNGPVSTLSDKL-LGDGSGK-ILASGGEDA--TVRLWSLSSSGKRGQQALKATLYGHE-KPIKLMSVAGH  269 (501)
Q Consensus       195 ~~~~~~~~~~h~~~v~~l~~s~-~~~~~~~-~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~  269 (501)
                      +|..+..+.........+-|.- ....+|+ +|+++..||  .+.+.|+.+++       +..+.... .......+++.
T Consensus        19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~-------i~QLTdg~g~~~~g~~~s~~   91 (386)
T PF14583_consen   19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE-------ITQLTDGPGDNTFGGFLSPD   91 (386)
T ss_dssp             T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E-------EEE---SS-B-TTT-EE-TT
T ss_pred             CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE-------EEECccCCCCCccceEEecC
Confidence            5555555543333223232210 0025665 455555555  45666777765       33333322 22224456664


Q ss_pred             CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe-----------------------CCc
Q 010784          270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS-----------------------GSS  326 (501)
Q Consensus       270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~  326 (501)
                       .+.++-......|.-.|+++.+.............. ....+..+...++.+.                       ...
T Consensus        92 -~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~-gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~  169 (386)
T PF14583_consen   92 -DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGY-GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR  169 (386)
T ss_dssp             -SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEE-EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred             -CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccc-cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence             455554545568888999987643222211111000 0111111111111110                       014


Q ss_pred             EEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCC---cE--EEEecCCCCCCCCCCCcccccCcccCeEEEEe
Q 010784          327 VVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIG---KA--MTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM  400 (501)
Q Consensus       327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d---~i--~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  400 (501)
                      |...|+.+++....+. -...+..+.|+|. ..+|+-|-++   .|  |||-+++....  ..++..-. ....+..=-|
T Consensus       170 i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~--~~~v~~~~-~~e~~gHEfw  245 (386)
T PF14583_consen  170 IFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN--VKKVHRRM-EGESVGHEFW  245 (386)
T ss_dssp             EEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS----TTEEEEEEEE
T ss_pred             EEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc--ceeeecCC-CCcccccccc
Confidence            6777888887665555 3677889999996 4555555433   23  78877653221  11122111 1223334457


Q ss_pred             cCC--eEEEE----ecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC
Q 010784          401 DPY--KIVTG----GRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG  459 (501)
Q Consensus       401 ~~~--~~l~~----gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  459 (501)
                      .|+  .+..-    ++.+..|.-+|+.+++......       ..+..-+.-++||++++.=++|
T Consensus       246 ~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-------~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  246 VPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-------MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             -TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-------E-SEEEEEE-TTSSEEEEEE--
T ss_pred             cCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-------CCceeeeEEcCCCCEEEecCCC
Confidence            777  33322    2234467777888776543221       1123345567899988876544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.75  E-value=2.6  Score=36.86  Aligned_cols=186  Identities=15%  Similarity=0.051  Sum_probs=104.9

Q ss_pred             CceeEEEEeecCCeEEEEEeCCC--eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe--CCcEEEEEcCC
Q 010784          259 KPIKLMSVAGHKSFLLVTISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS--GSSVVTIDLRT  334 (501)
Q Consensus       259 ~~v~~l~~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~  334 (501)
                      .-...+.|.. ++.++-+.+.-|  .|+.+|+.+++.........    ......+...++.++..+  .+...+||..+
T Consensus        45 aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~----~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t  119 (264)
T PF05096_consen   45 AFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP----RYFGEGITILGDKLYQLTWKEGTGFVYDPNT  119 (264)
T ss_dssp             -EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT----T--EEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             ccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc----cccceeEEEECCEEEEEEecCCeEEEEcccc
Confidence            4456788853 677778877665  79999999997654332221    112223344455555554  35789999999


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCc-----ccCeEEEEecCCeEEEEe
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH-----VGSVTQLHMDPYKIVTGG  409 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~~l~~g  409 (501)
                      .+.+.++.- .+.=..++. .+..++.+-+.+.|+++|..+.+..      ..+...     -..++-+.+-...+.|-.
T Consensus       120 l~~~~~~~y-~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~------~~i~V~~~g~pv~~LNELE~i~G~IyANV  191 (264)
T PF05096_consen  120 LKKIGTFPY-PGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEV------RTIQVTDNGRPVSNLNELEYINGKIYANV  191 (264)
T ss_dssp             TEEEEEEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEE------EEEE-EETTEE---EEEEEEETTEEEEEE
T ss_pred             ceEEEEEec-CCcceEEEc-CCCEEEEECCccceEEECCcccceE------EEEEEEECCEECCCcEeEEEEcCEEEEEe
Confidence            998887764 344556663 2344555555666999998875543      222211     123455666655666655


Q ss_pred             cCCCcEEEEeCCCcccccccccCC----------CCCCCcceeeeEeeccccEEEEee
Q 010784          410 RDDLRINIWETDTGMLANSLLCNY----------PEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       410 s~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      =....|...|..+|++...+....          ......-.+.+++.|..+.|...|
T Consensus       192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            455667777777777665442110          011245678999998776665554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.61  E-value=3.3  Score=41.66  Aligned_cols=151  Identities=13%  Similarity=-0.026  Sum_probs=79.8

Q ss_pred             CCceEEeeCCcEEEeecC------CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          112 PHDHILLDNNDIFSTQGS------SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~------~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      .+...+++++|..+|.-.      .|..-.+|-...+........+.  ..+.-.|+|             +|..+++..
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWsp-------------DG~~lw~v~  415 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSL-------------DADAVWVVV  415 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECC-------------CCCceEEEe
Confidence            478999999998887554      23333444332222333333333  377788888             666666654


Q ss_pred             CC-CceEEe-----------c-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEE---eccCCCcccccc
Q 010784          186 CD-HSIRLW-----------W-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW---SLSSSGKRGQQA  249 (501)
Q Consensus       186 ~d-g~i~vw-----------d-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iw---d~~~~~~~~~~~  249 (501)
                      .. ..+++.           + .+.....  ...+.|..+.||    ++|..++... +|.|.+=   ....+..  ...
T Consensus       416 dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wS----pDG~RiA~i~-~g~v~Va~Vvr~~~G~~--~l~  486 (591)
T PRK13616        416 DGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLS----RDGVRAAMII-GGKVYLAVVEQTEDGQY--ALT  486 (591)
T ss_pred             cCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEEC----CCCCEEEEEE-CCEEEEEEEEeCCCCce--eec
Confidence            22 112222           2 1111111  235679999998    8999888765 4777763   3222321  000


Q ss_pred             ceeec-cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEEC
Q 010784          250 LKATL-YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDT  288 (501)
Q Consensus       250 ~~~~~-~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~  288 (501)
                      ....+ ..-...+..+.|.. ++. |+.+..++...+|.+
T Consensus       487 ~~~~l~~~l~~~~~~l~W~~-~~~-L~V~~~~~~~~v~~v  524 (591)
T PRK13616        487 NPREVGPGLGDTAVSLDWRT-GDS-LVVGRSDPEHPVWYV  524 (591)
T ss_pred             ccEEeecccCCccccceEec-CCE-EEEEecCCCCceEEE
Confidence            11112 22233457888985 555 445555444445543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.58  E-value=3.4  Score=37.37  Aligned_cols=179  Identities=11%  Similarity=0.118  Sum_probs=85.3

Q ss_pred             eeCCCceEEec-CCceee-eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          184 SSCDHSIRLWW-KGSCQR-CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       184 ~~~dg~i~vwd-~~~~~~-~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                      ++..|.|..=. -++.-+ ....-.+.+..+.-+    ++|.++++++......-||-....      -....+.....|
T Consensus       120 ~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~----~dG~~vavs~~G~~~~s~~~G~~~------w~~~~r~~~~ri  189 (302)
T PF14870_consen  120 AGDRGAIYRTTDGGKTWQAVVSETSGSINDITRS----SDGRYVAVSSRGNFYSSWDPGQTT------WQPHNRNSSRRI  189 (302)
T ss_dssp             EETT--EEEESSTTSSEEEEE-S----EEEEEE-----TTS-EEEEETTSSEEEEE-TT-SS-------EEEE--SSS-E
T ss_pred             EcCCCcEEEeCCCCCCeeEcccCCcceeEeEEEC----CCCcEEEEECcccEEEEecCCCcc------ceEEccCcccee
Confidence            34456554443 333222 223445677777765    889988888766566677765432      122233356789


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      ..+.|.+ ++.+.+ ....|.|++=+......                                   -|.    +.+...
T Consensus       190 q~~gf~~-~~~lw~-~~~Gg~~~~s~~~~~~~-----------------------------------~w~----~~~~~~  228 (302)
T PF14870_consen  190 QSMGFSP-DGNLWM-LARGGQIQFSDDPDDGE-----------------------------------TWS----EPIIPI  228 (302)
T ss_dssp             EEEEE-T-TS-EEE-EETTTEEEEEE-TTEEE-----------------------------------EE-------B-TT
T ss_pred             hhceecC-CCCEEE-EeCCcEEEEccCCCCcc-----------------------------------ccc----cccCCc
Confidence            9999997 555544 44888888877221100                                   000    000011


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEE
Q 010784          342 AICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIW  418 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iw  418 (501)
                      ....-.+..+++.+++...++|+.+.+ +.....++.   .+.......-...++.+.|.+. +-++.| .+|.|.-|
T Consensus       229 ~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGkt---W~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  229 KTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKT---WQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             SS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS----EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             ccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCcc---ceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence            112344789999999999998888763 233333322   1111222222445778887655 777776 88887655

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.55  E-value=1.8  Score=35.94  Aligned_cols=174  Identities=16%  Similarity=0.125  Sum_probs=93.0

Q ss_pred             CCCCEEEEeeC--CCcEEEEeccCCCccccccceeeccC---CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccc
Q 010784          220 GSGKILASGGE--DATVRLWSLSSSGKRGQQALKATLYG---HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV  294 (501)
Q Consensus       220 ~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~  294 (501)
                      .+|.++.+.+.  ...|++||+.+++....    ..+..   ....++.   .  ......-.=.+|.-..+|.++.   
T Consensus        54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s----~~l~~~~~FgEGit~---~--gd~~y~LTw~egvaf~~d~~t~---  121 (262)
T COG3823          54 LDGHILESTGLYGFSKIRVSDLTTGQEIFS----EKLAPDTVFGEGITK---L--GDYFYQLTWKEGVAFKYDADTL---  121 (262)
T ss_pred             eCCEEEEeccccccceeEEEeccCceEEEE----eecCCccccccceee---c--cceEEEEEeccceeEEEChHHh---
Confidence            35666666654  34799999998764111    11110   1112221   1  2223333456788888998887   


Q ss_pred             cceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeecc--CC---CcEEEEEEcCCCcEEEEEcCCc-
Q 010784          295 RSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAI--CK---PILHSFSIMPSKSLICTGGIGK-  367 (501)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~--~~---~~v~~v~~~~~~~~l~~~~~d~-  367 (501)
                         ++......++.-+.+..+...+++..|+ .++.-|.++.....+...  ..   ..++.+.|- +|.+.|-.-... 
T Consensus       122 ---~~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~  197 (262)
T COG3823         122 ---EELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTR  197 (262)
T ss_pred             ---hhhcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecc
Confidence               4455557788888888888887777776 677767766544332221  11   112222222 344443332222 


Q ss_pred             EEEEecCCCCCCCC------CCCcccccCcccCeEEEEecCC--eEEEEe
Q 010784          368 AMTWDIRRSQDAVK------PQPMAELDGHVGSVTQLHMDPY--KIVTGG  409 (501)
Q Consensus       368 i~iwd~~~~~~~~~------~~~~~~~~~h~~~v~~l~~~~~--~~l~~g  409 (501)
                      |...|..+++.+.-      ......-..|.+..+.+++.|.  +++++|
T Consensus       198 I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         198 IARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             eEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            33333333332100      1112223345667889999988  888887

>PHA02790 Kelch-like protein; Provisional

Probab=94.47  E-value=4.8  Score=39.61  Aligned_cols=183  Identities=11%  Similarity=-0.005  Sum_probs=84.7

Q ss_pred             CCCEEEEeeCCC-----cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC--CeEEEEECCCCcc
Q 010784          221 SGKILASGGEDA-----TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD--SKVRVWDTSTSSA  293 (501)
Q Consensus       221 ~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d--g~v~vwd~~~~~~  293 (501)
                      ++.+++.|+.++     .+..||..++.-    ..+..+....... +++..  ++.+.+.|+.+  ..+..||..+.+.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W----~~~~~m~~~r~~~-~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W  343 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNW----IPIPPMNSPRLYA-SGVPA--NNKLYVVGGLPNPTSVERWFHGDAAW  343 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEE----EECCCCCchhhcc-eEEEE--CCEEEEECCcCCCCceEEEECCCCeE
Confidence            455667777543     466677766431    1122222111111 22222  67777777754  3577888765543


Q ss_pred             ccceecccceecCCCceeeecCCCeEEEEeC-----CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcEEEEEcCC
Q 010784          294 VRSSCCVGMTSVPGVPVDMKCHESMLYIASG-----SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSLICTGGIG  366 (501)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~d  366 (501)
                      ..    ...........+.....+.+++..|     ..+..||.++.+-...  +....... ++ ..-++++.+.|+  
T Consensus       344 ~~----~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG--  415 (480)
T PHA02790        344 VN----MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR--  415 (480)
T ss_pred             EE----CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC--
Confidence            21    1111111112233334455555544     2466788776543321  11111111 12 223677777764  


Q ss_pred             cEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCc
Q 010784          367 KAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTG  423 (501)
Q Consensus       367 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~  423 (501)
                      .+.+||..+.+    ...+..+...... .+++...+++.+.|+.+     ..+..||..++
T Consensus       416 ~~e~ydp~~~~----W~~~~~m~~~r~~-~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        416 NAEFYCESSNT----WTLIDDPIYPRDN-PELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ceEEecCCCCc----EeEcCCCCCCccc-cEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence            26678887643    2222222211112 23444455666666544     24666666544

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.44  E-value=2.9  Score=42.29  Aligned_cols=149  Identities=9%  Similarity=0.051  Sum_probs=88.3

Q ss_pred             CCeEEEEeCCcEEEEEcCCCceEe------eec----------------cCCCcEEEEEEcC--CCcEEEEEcCCc-EEE
Q 010784          316 ESMLYIASGSSVVTIDLRTMQKVM------TPA----------------ICKPILHSFSIMP--SKSLICTGGIGK-AMT  370 (501)
Q Consensus       316 ~~~~~~~~~~~i~~~d~~~~~~~~------~~~----------------~~~~~v~~v~~~~--~~~~l~~~~~d~-i~i  370 (501)
                      .+.+++|.++.|.+|+........      .+.                .....|+.|....  +...|+.+.+|| |.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            455777788888888775432211      000                0123344444332  456788888888 999


Q ss_pred             EecCCCC--------C------CCCCCCcccccCcccCeEEEEec--CC-eEEEEecCCCcEEEEeCCCcccccccccCC
Q 010784          371 WDIRRSQ--------D------AVKPQPMAELDGHVGSVTQLHMD--PY-KIVTGGRDDLRINIWETDTGMLANSLLCNY  433 (501)
Q Consensus       371 wd~~~~~--------~------~~~~~~~~~~~~h~~~v~~l~~~--~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~  433 (501)
                      |.+..-.        .      ....+|...+.. ...+++++++  .. +++|.++....|.||-..........  ..
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~--~~  205 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH--VP  205 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc--cc
Confidence            9763210        0      000122233332 3478899998  66 99999888888988876542111111  00


Q ss_pred             CCCCCcceeeeEeeccc-----c-EEEEeecCCCceEEEeec
Q 010784          434 PEEADISTGCSAMAVSG-----C-RIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       434 ~~~~~~~v~~~~~s~~g-----~-~l~s~~~d~~g~i~~w~~  469 (501)
                      ...+...|.+++|-++.     . +|++++  =.|.+.+|++
T Consensus       206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d--I~G~v~~~~I  245 (717)
T PF08728_consen  206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATD--ISGEVWTFKI  245 (717)
T ss_pred             ccccccCCCeeEeecCCCCCccceEEEEEe--ccCcEEEEEE
Confidence            12356778999998754     2 666676  4599999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PHA02790 Kelch-like protein; Provisional

Probab=94.40  E-value=4.7  Score=39.68  Aligned_cols=142  Identities=11%  Similarity=0.065  Sum_probs=68.7

Q ss_pred             CCCEEEEeeCCC--cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC---eEEEEECCCCcccc
Q 010784          221 SGKILASGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS---KVRVWDTSTSSAVR  295 (501)
Q Consensus       221 ~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg---~v~vwd~~~~~~~~  295 (501)
                      ++.+.+.|+.++  .+..||..++.    +..+..+....... +++..  ++.+.+.|+.++   .+..||.++.+...
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~----W~~~~~l~~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~  390 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAA----WVNMPSLLKPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQF  390 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCe----EEECCCCCCCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEe
Confidence            567777887643  57778765543    12222222111111 22222  677778887653   46778887765422


Q ss_pred             ceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe--eeccCCCcEEEEEEcCCCcEEEEEcCC-----c-
Q 010784          296 SSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM--TPAICKPILHSFSIMPSKSLICTGGIG-----K-  367 (501)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d-----~-  367 (501)
                      .    .....+....++...++.+++ .|+.+..||.++.+-..  .+.........+.  -++++.+.|+.+     . 
T Consensus       391 ~----~~m~~~r~~~~~~~~~~~IYv-~GG~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~  463 (480)
T PHA02790        391 G----PSTYYPHYKSCALVFGRRLFL-VGRNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDT  463 (480)
T ss_pred             C----CCCCCccccceEEEECCEEEE-ECCceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccce
Confidence            1    111111111122223333443 34567788887654432  2221112222222  267788887732     2 


Q ss_pred             EEEEecCCC
Q 010784          368 AMTWDIRRS  376 (501)
Q Consensus       368 i~iwd~~~~  376 (501)
                      +..||..+.
T Consensus       464 ve~Yd~~~~  472 (480)
T PHA02790        464 IEVYNNRTY  472 (480)
T ss_pred             EEEEECCCC
Confidence            667776654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.40  E-value=5.1  Score=38.61  Aligned_cols=231  Identities=18%  Similarity=0.117  Sum_probs=111.6

Q ss_pred             cCcEEEEe-eCCC----ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC-----------cEEEEe
Q 010784          177 TENVLVTS-SCDH----SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA-----------TVRLWS  238 (501)
Q Consensus       177 ~~~~l~s~-~~dg----~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg-----------~i~iwd  238 (501)
                      +|+++|.+ +..|    ++++.|  +++.+...- .......+.|.    ++++.|+....+.           .|..|.
T Consensus       134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~~~~~~~~W~----~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~  208 (414)
T PF02897_consen  134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-ENPKFSSVSWS----DDGKGFFYTRFDEDQRTSDSGYPRQVYRHK  208 (414)
T ss_dssp             TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EEEESEEEEEC----TTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred             CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cccccceEEEe----CCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence            78888754 3333    488888  554443211 11122238886    6766665544332           377888


Q ss_pred             ccCCCccccccceeeccCCCCc--eeEEEEeecCCeEEEE-EeCC---CeEEEEECCCCc-cccceecccceecCCCcee
Q 010784          239 LSSSGKRGQQALKATLYGHEKP--IKLMSVAGHKSFLLVT-ISKD---SKVRVWDTSTSS-AVRSSCCVGMTSVPGVPVD  311 (501)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~~~l~s-~s~d---g~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~  311 (501)
                      +.+...    .-...+......  ...+..+. ++++++. ....   ..+.+.|+..+. .......+ .....+....
T Consensus       209 ~gt~~~----~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l-~~~~~~~~~~  282 (414)
T PF02897_consen  209 LGTPQS----EDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL-SPREDGVEYY  282 (414)
T ss_dssp             TTS-GG----G-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE-EESSSS-EEE
T ss_pred             CCCChH----hCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE-eCCCCceEEE
Confidence            877643    112233333332  45677776 5555544 3332   347788887641 00000111 1122333344


Q ss_pred             eecCCCeEEEEeCC-----cEEEEEcCCCce---EeeeccCCC--cEEEEEEcCCCcEEEEEcCCc---EEEEecC-CCC
Q 010784          312 MKCHESMLYIASGS-----SVVTIDLRTMQK---VMTPAICKP--ILHSFSIMPSKSLICTGGIGK---AMTWDIR-RSQ  377 (501)
Q Consensus       312 ~~~~~~~~~~~~~~-----~i~~~d~~~~~~---~~~~~~~~~--~v~~v~~~~~~~~l~~~~~d~---i~iwd~~-~~~  377 (501)
                      +...++.+++.+..     .+...++.....   ...+..+..  .+..+... .+.+++....++   |+++++. ...
T Consensus       283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             EEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECCCCcE
Confidence            44446666665542     577777776653   224444444  45555553 233444444443   9999999 432


Q ss_pred             CCCCCCCcccccCcccCeEEEEecCC--eEEEEe-cC--CCcEEEEeCCCccc
Q 010784          378 DAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGG-RD--DLRINIWETDTGML  425 (501)
Q Consensus       378 ~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~g-s~--dg~i~iwd~~~~~~  425 (501)
                      ..     ...+. -.+.|..+...++  .+.+.- |.  -+++..||+.+++.
T Consensus       362 ~~-----~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  362 SR-----EIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EE-----EEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             Ee-----eecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            21     11111 1334555554444  333332 22  35677888877764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.09  E-value=5.5  Score=37.82  Aligned_cols=84  Identities=7%  Similarity=0.013  Sum_probs=53.7

Q ss_pred             ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecc--------------ccEEEEe
Q 010784          392 VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS--------------GCRIVTA  456 (501)
Q Consensus       392 ~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------g~~l~s~  456 (501)
                      ...+.+++.+|. +++++...=|+|.++|+.++..++.+++-. ...-+.+....-...              ..+|+.=
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            345788999999 888887778999999999999888875322 111111111111000              1233332


Q ss_pred             ecCCCceEEEeeccCCcccee
Q 010784          457 SYGEPGLLQFRDFSNATCPVL  477 (501)
Q Consensus       457 ~~d~~g~i~~w~~~~~~~~~~  477 (501)
                      .. ..|.|.||.+..+.+..+
T Consensus       386 ap-rRg~lEvW~~~~g~Rv~a  405 (415)
T PF14655_consen  386 AP-RRGILEVWSMRQGPRVAA  405 (415)
T ss_pred             ec-cCCeEEEEecCCCCEEEE
Confidence            22 679999999999887554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.08  E-value=0.2  Score=29.59  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=27.6

Q ss_pred             CceeEEEEeecCC--eEEEEEeCCCeEEEEECCCC
Q 010784          259 KPIKLMSVAGHKS--FLLVTISKDSKVRVWDTSTS  291 (501)
Q Consensus       259 ~~v~~l~~~~~~~--~~l~s~s~dg~v~vwd~~~~  291 (501)
                      +.|.+++|+|..+  .+|+.+-.-|.|.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4688999998655  78888888899999999963

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.02  E-value=1.2  Score=44.48  Aligned_cols=114  Identities=13%  Similarity=0.089  Sum_probs=76.8

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecc-cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLS-DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      .-..++-+.-+.-++..++.+....+.|||...+ .....-. ...+.|.++.|...           |+++.+++.|..
T Consensus        28 ~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~-~lE~~~~f~~~~~I~dLDWtst-----------~d~qsiLaVGf~   95 (631)
T PF12234_consen   28 GISNPSLISGSSIKKIAVVDSSRSELTIWDTRSG-VLEYEESFSEDDPIRDLDWTST-----------PDGQSILAVGFP   95 (631)
T ss_pred             CCCCcceEeecccCcEEEEECCCCEEEEEEcCCc-EEEEeeeecCCCceeeceeeec-----------CCCCEEEEEEcC
Confidence            3444666666677777777777889999999875 2221111 45788999999873           489999999999


Q ss_pred             CceEEecC--------C---ceeee--ccCCC-CceEEEEeeecCCCCCCEEEEeeCCCcEEEEecc
Q 010784          188 HSIRLWWK--------G---SCQRC--FKGHN-GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLS  240 (501)
Q Consensus       188 g~i~vwd~--------~---~~~~~--~~~h~-~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~  240 (501)
                      +.|.++..        +   ..++.  +..|+ .+|.+..|.    ++|.+++.++  ..+.|+|-.
T Consensus        96 ~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl----~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen   96 HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL----KDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             cEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEe----cCCeEEEEeC--CEEEEECCC
Confidence            99999841        1   12222  23444 689999996    6665555433  567887643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.62  E-value=10  Score=39.41  Aligned_cols=195  Identities=11%  Similarity=0.047  Sum_probs=104.3

Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccCCCC--------ceEEEEeeec------------CCCCCCEEEEeeCCCcEE
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNG--------PVSTLSDKLL------------GDGSGKILASGGEDATVR  235 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~--------~v~~l~~s~~------------~~~~~~~l~sg~~dg~i~  235 (501)
                      +..+..++.++.|.-.|  +|+.+-.+.....        ....+.+.-.            +...+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            56677777778777777  6666554432111        0122333100            012345788888999999


Q ss_pred             EEeccCCCccccccceeeccCCCCcee-------------EEEEeec-CCeEEEEEeC----------CCeEEEEECCCC
Q 010784          236 LWSLSSSGKRGQQALKATLYGHEKPIK-------------LMSVAGH-KSFLLVTISK----------DSKVRVWDTSTS  291 (501)
Q Consensus       236 iwd~~~~~~~~~~~~~~~~~~~~~~v~-------------~l~~~~~-~~~~l~s~s~----------dg~v~vwd~~~~  291 (501)
                      -.|.++++.      ...+. ..+.|.             .+.-.|- .+..++.|+.          +|.|+-+|.+++
T Consensus       274 ALDA~TGk~------~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG  346 (764)
T TIGR03074       274 ALDADTGKL------CEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG  346 (764)
T ss_pred             EEECCCCCE------EEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence            999998874      22221 111110             0000010 1234555542          688999999999


Q ss_pred             ccccceecccce----ecCC-----------CceeeecCCCeEEEEeC-------------------CcEEEEEcCCCce
Q 010784          292 SAVRSSCCVGMT----SVPG-----------VPVDMKCHESMLYIASG-------------------SSVVTIDLRTMQK  337 (501)
Q Consensus       292 ~~~~~~~~~~~~----~~~~-----------~~~~~~~~~~~~~~~~~-------------------~~i~~~d~~~~~~  337 (501)
                      +.+-........    ...+           .....+...+.+++.++                   +.+.-.|.++++.
T Consensus       347 kl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~  426 (764)
T TIGR03074       347 ALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE  426 (764)
T ss_pred             cEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence            876544321100    0011           11122222233444332                   2577789999999


Q ss_pred             EeeeccCCCc---------EEEEEEcC-CCc---EEEEEcCCc-EEEEecCCCCCC
Q 010784          338 VMTPAICKPI---------LHSFSIMP-SKS---LICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       338 ~~~~~~~~~~---------v~~v~~~~-~~~---~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                      ...++.....         ..-+.+.. +|+   .++.++.++ +.+.|.++++.+
T Consensus       427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI  482 (764)
T ss_pred             EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence            8777652111         11122222 553   788888888 999999988765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=93.23  E-value=0.078  Score=48.81  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             ccccHHHHHHHHhcC-ChhhhHHHHhhChhHHHHcC
Q 010784           21 ADLNEDAVAHCALNL-SLQDISNMAMSCKLFKHVAY   55 (501)
Q Consensus        21 ~~Lp~e~~~~i~~~L-~~~~l~~~~~vc~~~~~~~~   55 (501)
                      .+||+|++..|...| ..-|+.+++.||+.||..+.
T Consensus         5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            479999999999999 66699999999999999874

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.13  E-value=1.3  Score=41.32  Aligned_cols=156  Identities=12%  Similarity=0.098  Sum_probs=92.6

Q ss_pred             eeecCCCeEEEEeCCcEEEEEcCCCceEe-eec-cCCC----cEE-EEEEcCCCcEEEEEcCCc-EEEE-ecCCCCCCCC
Q 010784          311 DMKCHESMLYIASGSSVVTIDLRTMQKVM-TPA-ICKP----ILH-SFSIMPSKSLICTGGIGK-AMTW-DIRRSQDAVK  381 (501)
Q Consensus       311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~-~~~~----~v~-~v~~~~~~~~l~~~~~d~-i~iw-d~~~~~~~~~  381 (501)
                      -+..++..+++.+++++.++++.+..... ++. ...+    .|+ ++..-..|.-+.+++.|+ |.-| |.+..... .
T Consensus       227 lL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p-~  305 (733)
T COG4590         227 LLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQP-H  305 (733)
T ss_pred             EECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCC-c
Confidence            34566777888899999999887654321 111 1111    121 122223566677777777 7666 66654321 1


Q ss_pred             CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC
Q 010784          382 PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE  460 (501)
Q Consensus       382 ~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~  460 (501)
                      ...++.++-....+..+.-..+ +.+++-+.+|++.++...+.+.+..-.      --..+.-+++||.+.++++-   +
T Consensus       306 l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~------~~~~~~~~~~Sp~~~~Ll~e---~  376 (733)
T COG4590         306 LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER------AYQAPQLVAMSPNQAYLLSE---D  376 (733)
T ss_pred             ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh------hhcCcceeeeCcccchheee---c
Confidence            2223333333344555544445 777777899999988765444332211      12356678999999999986   5


Q ss_pred             CceEEEeeccCCccce
Q 010784          461 PGLLQFRDFSNATCPV  476 (501)
Q Consensus       461 ~g~i~~w~~~~~~~~~  476 (501)
                      .|.|+++.+++...-+
T Consensus       377 ~gki~~~~l~Nr~Pei  392 (733)
T COG4590         377 QGKIRLAQLENRNPEI  392 (733)
T ss_pred             CCceEEEEecCCCCCc
Confidence            5899999988766543

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.03  E-value=11  Score=38.00  Aligned_cols=183  Identities=16%  Similarity=0.104  Sum_probs=92.2

Q ss_pred             CCceEEecCCc--eeeeccCCCCceEEEEeeecCCCCCCEEEEee------CCCcEEEEeccCCCccccccceeeccCCC
Q 010784          187 DHSIRLWWKGS--CQRCFKGHNGPVSTLSDKLLGDGSGKILASGG------EDATVRLWSLSSSGKRGQQALKATLYGHE  258 (501)
Q Consensus       187 dg~i~vwd~~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  258 (501)
                      +|.+.-.+.+.  .+.-..+....+.+.+++    ++|+.++...      .|+.-.+|-...+..     ......+. 
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiS----pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-----~~~lt~g~-  397 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALS----RSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-----AVQVLEGH-  397 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceEC----CCCCEEEEEEeecCCCCCcceEEEEEeCCCc-----ceeeecCC-
Confidence            66665554221  122222333456777776    7888776654      244444554332322     11222222 


Q ss_pred             CceeEEEEeecCCeEEEEEeCCCe-EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784          259 KPIKLMSVAGHKSFLLVTISKDSK-VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       259 ~~v~~l~~~~~~~~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  337 (501)
                       ..+.-.|+| ++..+++.+.... +++.+-..                                 .+.+.+.++..++.
T Consensus       398 -~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~~~---------------------------------~gql~~~~vd~ge~  442 (591)
T PRK13616        398 -SLTRPSWSL-DADAVWVVVDGNTVVRVIRDPA---------------------------------TGQLARTPVDASAV  442 (591)
T ss_pred             -CCCCceECC-CCCceEEEecCcceEEEeccCC---------------------------------CceEEEEeccCchh
Confidence             256678987 5566666653322 22222111                                 01233334433333


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEE---EecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-eEEEEecCC
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGGIGKAMT---WDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-KIVTGGRDD  412 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~i---wd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-~~l~~gs~d  412 (501)
                      ..   ...+.|.++.|||||..++....+.|.+   -....+...  ......+ .+-...+.++.|.++ .+++. ..+
T Consensus       443 ~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~--l~~~~~l~~~l~~~~~~l~W~~~~~L~V~-~~~  516 (591)
T PRK13616        443 AS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYA--LTNPREVGPGLGDTAVSLDWRTGDSLVVG-RSD  516 (591)
T ss_pred             hh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCcee--ecccEEeecccCCccccceEecCCEEEEE-ecC
Confidence            22   2356799999999999988877655666   443334311  1111122 222334688999999 66654 344


Q ss_pred             CcEEEEeC
Q 010784          413 LRINIWET  420 (501)
Q Consensus       413 g~i~iwd~  420 (501)
                      +...+|.+
T Consensus       517 ~~~~v~~v  524 (591)
T PRK13616        517 PEHPVWYV  524 (591)
T ss_pred             CCCceEEE
Confidence            44455554

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.02  E-value=3.1  Score=39.61  Aligned_cols=137  Identities=10%  Similarity=0.064  Sum_probs=84.3

Q ss_pred             cEEEEEcCCCceEeeeccCCCcEEEEEEcCC--------CcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEE
Q 010784          326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPS--------KSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQ  397 (501)
Q Consensus       326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~--------~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  397 (501)
                      .++-.|++.|+.+..+..|...  -+.+.|+        .+.|+.-|+.+|.-.|.+.............+.+ .....+
T Consensus       491 kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t-Kn~Fss  567 (776)
T COG5167         491 KLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT-KNKFSS  567 (776)
T ss_pred             cceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc-cccccc
Confidence            6777899999999888887665  4667774        3355555555566666654321100000011111 122333


Q ss_pred             EEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          398 LHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       398 l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      ..-....++|.+|..|.|++||-- |....+..    .+-...|..+..+.+|++|++.+.   ..+.+-|+....
T Consensus       568 ~~tTesGyIa~as~kGDirLyDRi-g~rAKtal----P~lG~aIk~idvta~Gk~ilaTCk---~yllL~d~~ik~  635 (776)
T COG5167         568 GMTTESGYIAAASRKGDIRLYDRI-GKRAKTAL----PGLGDAIKHIDVTANGKHILATCK---NYLLLTDVPIKY  635 (776)
T ss_pred             cccccCceEEEecCCCceeeehhh-cchhhhcC----cccccceeeeEeecCCcEEEEeec---ceEEEEeccccc
Confidence            333334788888899999999954 33333332    344678999999999999888764   477777765433

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.87  E-value=1.8  Score=43.18  Aligned_cols=115  Identities=13%  Similarity=0.042  Sum_probs=72.6

Q ss_pred             CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec--CC--eEEEEecCCCcEEEEeC
Q 010784          346 PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD--PY--KIVTGGRDDLRINIWET  420 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~--~~l~~gs~dg~i~iwd~  420 (501)
                      ....-+.-+.-++..++.+++. +.|||.+.+...    .-..+ ...+.|..+.|.  |+  .+++.| ..+.|.++.-
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE----~~~~f-~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q  103 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE----YEESF-SEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQ  103 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEE----Eeeee-cCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEc
Confidence            3444455555566666655666 999999987632    11233 346789999985  44  556655 8889998854


Q ss_pred             C---------CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          421 D---------TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       421 ~---------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      .         +...+..+....  ....+|.+..|.++|.+++.+|    +.+.+++-..+
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~--~T~h~Igds~Wl~~G~LvV~sG----Nqlfv~dk~~~  158 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISS--HTPHPIGDSIWLKDGTLVVGSG----NQLFVFDKWLD  158 (631)
T ss_pred             cchhhhcCCcccceeEEEEeec--CCCCCccceeEecCCeEEEEeC----CEEEEECCCcC
Confidence            2         122333332211  1235788999999998888776    67888874433

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.74  E-value=8.3  Score=35.77  Aligned_cols=77  Identities=12%  Similarity=-0.032  Sum_probs=43.2

Q ss_pred             cccccCcccCeEEEEecC-------C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784          385 MAELDGHVGSVTQLHMDP-------Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA  456 (501)
Q Consensus       385 ~~~~~~h~~~v~~l~~~~-------~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  456 (501)
                      +..+..| ..+..+.|..       . .++++.-..+.|....+.++..+....... ......+..+++.|||.+.++.
T Consensus       246 ~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~r~~~v~~~pDG~Lyv~~  323 (331)
T PF07995_consen  246 VFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-GGFGGRPRDVAQGPDGALYVSD  323 (331)
T ss_dssp             SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-TTSSS-EEEEEEETTSEEEEEE
T ss_pred             ceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-ccCCCCceEEEEcCCCeEEEEE
Confidence            3334433 4566666642       2 577776566778888776443221111000 2334578999999999998887


Q ss_pred             ecCCCceEE
Q 010784          457 SYGEPGLLQ  465 (501)
Q Consensus       457 ~~d~~g~i~  465 (501)
                      .  .+|.|+
T Consensus       324 d--~~G~iy  330 (331)
T PF07995_consen  324 D--SDGKIY  330 (331)
T ss_dssp             ---TTTTEE
T ss_pred             C--CCCeEe
Confidence            6  557764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=92.73  E-value=9.6  Score=37.43  Aligned_cols=154  Identities=15%  Similarity=0.148  Sum_probs=70.8

Q ss_pred             CCcEEEeec---CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C
Q 010784          120 NNDIFSTQG---SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K  195 (501)
Q Consensus       120 ~~~~~~~~g---~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~  195 (501)
                      .++.+++++   .......+.|..  +.++..+.........+...+             +|++++..+  +.+..+| .
T Consensus       113 ~~gl~~~~~~~~~~~~~~~~iD~~--G~Vrw~~~~~~~~~~~~~~l~-------------nG~ll~~~~--~~~~e~D~~  175 (477)
T PF05935_consen  113 EDGLYFVNGNDWDSSSYTYLIDNN--GDVRWYLPLDSGSDNSFKQLP-------------NGNLLIGSG--NRLYEIDLL  175 (477)
T ss_dssp             TT-EEEEEETT--BEEEEEEEETT--S-EEEEE-GGGT--SSEEE-T-------------TS-EEEEEB--TEEEEE-TT
T ss_pred             CCcEEEEeCCCCCCCceEEEECCC--ccEEEEEccCccccceeeEcC-------------CCCEEEecC--CceEEEcCC
Confidence            467788877   556667777766  344444432222222255555             777777655  7788888 7


Q ss_pred             CceeeeccCCCCc---eEEEEeeecCCCCCCEEEEee--------------CCC---------cEEEEeccCCCcccccc
Q 010784          196 GSCQRCFKGHNGP---VSTLSDKLLGDGSGKILASGG--------------EDA---------TVRLWSLSSSGKRGQQA  249 (501)
Q Consensus       196 ~~~~~~~~~h~~~---v~~l~~s~~~~~~~~~l~sg~--------------~dg---------~i~iwd~~~~~~~~~~~  249 (501)
                      |+.+..+....+.   =..+...    ++|++|+.+.              .|.         .+..||+..--......
T Consensus       176 G~v~~~~~l~~~~~~~HHD~~~l----~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~  251 (477)
T PF05935_consen  176 GKVIWEYDLPGGYYDFHHDIDEL----PNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDT  251 (477)
T ss_dssp             --EEEEEE--TTEE-B-S-EEE-----TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--T
T ss_pred             CCEEEeeecCCcccccccccEEC----CCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCccccc
Confidence            7766554322211   1233332    7788887776              222         12334443211000000


Q ss_pred             c-----eeecc---CCC--CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccc
Q 010784          250 L-----KATLY---GHE--KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV  294 (501)
Q Consensus       250 ~-----~~~~~---~~~--~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~  294 (501)
                      .     .....   ...  --+.++.+.+.++.+++++-.-..|...|.++++..
T Consensus       252 ~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~  306 (477)
T PF05935_consen  252 VLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK  306 (477)
T ss_dssp             TGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred             ccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence            0     00000   000  136788898767777777766668888898777653

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.67  E-value=14  Score=38.42  Aligned_cols=153  Identities=12%  Similarity=0.056  Sum_probs=82.6

Q ss_pred             CeEEEEEeCCCeEEEEECCCCccccceeccccee-------cC-C---CceeeecCCCeEEEEe-----------CCcEE
Q 010784          271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS-------VP-G---VPVDMKCHESMLYIAS-----------GSSVV  328 (501)
Q Consensus       271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-------~~-~---~~~~~~~~~~~~~~~~-----------~~~i~  328 (501)
                      +..++.++.|+.+.-.|.++++....+.......       .. +   .........+.+++..           .+.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            3477788899999999999998764432211110       00 0   0001112234444442           24689


Q ss_pred             EEEcCCCceEeeeccC---------CCc--------E-EEEEEcCCCcEEEEEcC------------------Cc-EEEE
Q 010784          329 TIDLRTMQKVMTPAIC---------KPI--------L-HSFSIMPSKSLICTGGI------------------GK-AMTW  371 (501)
Q Consensus       329 ~~d~~~~~~~~~~~~~---------~~~--------v-~~v~~~~~~~~l~~~~~------------------d~-i~iw  371 (501)
                      -+|.++++.+..+..-         .+.        + ..++++++..+++.+..                  .. |.-.
T Consensus       340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL  419 (764)
T TIGR03074       340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL  419 (764)
T ss_pred             EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence            9999999998766421         011        1 22344444334333221                  12 5555


Q ss_pred             ecCCCCCCCCCCCcccccC--cc--------cC-eEEEEe-cCC--eEEEEecCCCcEEEEeCCCccccccc
Q 010784          372 DIRRSQDAVKPQPMAELDG--HV--------GS-VTQLHM-DPY--KIVTGGRDDLRINIWETDTGMLANSL  429 (501)
Q Consensus       372 d~~~~~~~~~~~~~~~~~~--h~--------~~-v~~l~~-~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~  429 (501)
                      |.++++..      -.++.  |.        .+ +..+.. ...  ..++.++.+|.+.+.|-++|+.+...
T Consensus       420 D~~TGk~~------W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       420 DATTGKER------WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             eCCCCceE------EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            66665543      22222  11        11 122322 221  47888889999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.55  E-value=4.9  Score=33.88  Aligned_cols=111  Identities=14%  Similarity=0.200  Sum_probs=67.9

Q ss_pred             CceeeecCC-CeEEEEe-CCcEEEEEcC--CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC-------cEEEE-ecCC
Q 010784          308 VPVDMKCHE-SMLYIAS-GSSVVTIDLR--TMQKVMTPAICKPILHSFSIMPSKSLICTGGIG-------KAMTW-DIRR  375 (501)
Q Consensus       308 ~~~~~~~~~-~~~~~~~-~~~i~~~d~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-------~i~iw-d~~~  375 (501)
                      .+..+...+ +.+++++ +..|.+|++.  ..+....+.. -+.|..+.++..|+++++--.+       .+|+| +.+.
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~   97 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS   97 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence            444555555 6777754 5599999988  3445566765 4889999999999999987522       24664 2222


Q ss_pred             CCCCCCCCCcc-cccC---------------------cccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc
Q 010784          376 SQDAVKPQPMA-ELDG---------------------HVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       376 ~~~~~~~~~~~-~~~~---------------------h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~  423 (501)
                      .+..  ..++. .+-|                     -..++.+++..|-  .++++  .++++.+|.+...
T Consensus        98 ~~~~--~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg--~~~~l~lf~l~~~  165 (215)
T PF14761_consen   98 QKEE--NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG--CGNKLVLFTLKYQ  165 (215)
T ss_pred             hccc--CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE--cCCEEEEEEEEEE
Confidence            1110  00111 1111                     1346678888887  66665  4678999987654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.96  E-value=12  Score=35.76  Aligned_cols=149  Identities=11%  Similarity=0.058  Sum_probs=85.0

Q ss_pred             CcEEEeecCCeeeEEEEeccccc-ccceec--ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---
Q 010784          121 NDIFSTQGSSIQNIKIDNFLSES-YYRATL--SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---  194 (501)
Q Consensus       121 ~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---  194 (501)
                      +...+++|+..|.++|++...+. +....+  ..-..+|..++.-....        ..+...||. -.-..+.||.   
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s--------~~~~~~LaV-LhP~kl~vY~v~~  106 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVS--------GSEDLQLAV-LHPRKLSVYSVSL  106 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccC--------CCCcceEEE-ecCCEEEEEEEEe
Confidence            45789999999999999986532 111111  23356788777643100        002233333 4456666775   


Q ss_pred             -CCc-------eeeeccCCC--CceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccccccceeecc--CCCCce
Q 010784          195 -KGS-------CQRCFKGHN--GPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRGQQALKATLY--GHEKPI  261 (501)
Q Consensus       195 -~~~-------~~~~~~~h~--~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v  261 (501)
                       .+.       .+.....|.  .....++.-+..... ..+++.-+.||.+.+++-+...      ....+.  -..++ 
T Consensus       107 ~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~------f~~~lp~~llPgP-  179 (418)
T PF14727_consen  107 VDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA------FSRFLPDFLLPGP-  179 (418)
T ss_pred             cCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE------EEEEcCCCCCCcC-
Confidence             111       112222232  223344444444444 5688888999999999987643      122222  23444 


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEEC
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDT  288 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~  288 (501)
                        +.+.+ ..+.|++++.+..+.-|..
T Consensus       180 --l~Y~~-~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  180 --LCYCP-RTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             --eEEee-cCCEEEEecCceeEEEecH
Confidence              46665 4557888888888888765

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.79  E-value=11  Score=34.92  Aligned_cols=107  Identities=13%  Similarity=0.095  Sum_probs=50.8

Q ss_pred             CCeEEEEEeCC-----CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-------cEEEEEcCCCce
Q 010784          270 KSFLLVTISKD-----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-------SVVTIDLRTMQK  337 (501)
Q Consensus       270 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~d~~~~~~  337 (501)
                      ++.+++.|+.+     ..+..+|+.+.+................-.+.....+.+++..|.       .+..||+.+.+-
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            45677777754     346677776654210001111111111112223334555555442       578888876543


Q ss_pred             Ee--eeccCCCcEEEEEEcCCCcEEEEEcCCc-----EEEEecCCCC
Q 010784          338 VM--TPAICKPILHSFSIMPSKSLICTGGIGK-----AMTWDIRRSQ  377 (501)
Q Consensus       338 ~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d~-----i~iwd~~~~~  377 (501)
                      ..  .+... ......+...++++++.|+.++     +.+||..+.+
T Consensus       152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            22  12211 1112222233677777777432     5678887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.59  E-value=12  Score=35.24  Aligned_cols=118  Identities=8%  Similarity=0.129  Sum_probs=76.0

Q ss_pred             ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCc---e--eeeccCCCCceEEEEeeecCCCCCC
Q 010784          150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS---C--QRCFKGHNGPVSTLSDKLLGDGSGK  223 (501)
Q Consensus       150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~---~--~~~~~~h~~~v~~l~~s~~~~~~~~  223 (501)
                      ....++|.++.||+             |++.+|.--.|.+|.+.+ .+.   .  ..+.+..+..|....|+     +..
T Consensus        63 m~d~G~I~SIkFSl-------------DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-----~s~  124 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSL-------------DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-----SST  124 (657)
T ss_pred             ecCCCceeEEEecc-------------CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-----cCe
Confidence            34556899999998             899999999999999998 221   1  22334445678899996     335


Q ss_pred             EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCCeEEEEECCCC
Q 010784          224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTSTS  291 (501)
Q Consensus       224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~~  291 (501)
                      -++.-... -+-+|.......     .+...+.|...|.-..|.+...-.+++.+ ..+++.=+-++++
T Consensus       125 e~A~i~~~-G~e~y~v~pekr-----slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  125 EIAFITDQ-GIEFYQVLPEKR-----SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             eEEEEecC-CeEEEEEchhhh-----hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            55554443 467777766543     46667788888988888874443344433 3333333444433

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=90.74  E-value=19  Score=35.82  Aligned_cols=261  Identities=11%  Similarity=0.062  Sum_probs=115.7

Q ss_pred             eeCCcEEEeecCCeeeEEEEecccccc-cceecccC-CcceeEEEeeccCcCcccccCCCCcC-cEEEEeeCCCceEEe-
Q 010784          118 LDNNDIFSTQGSSIQNIKIDNFLSESY-YRATLSDH-KARITCMRLFPLHETSLFRSEPQRTE-NVLVTSSCDHSIRLW-  193 (501)
Q Consensus       118 ~~~~~~~~~~g~~d~~i~vw~~~~~~~-~~~~~~~h-~~~V~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~vw-  193 (501)
                      ...++..+.-+..+|.+..-.+..... .....-+. ....+++.+..             +| .+|+.|+.-|.=.++ 
T Consensus       218 ~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~-------------~g~d~lf~gs~~gds~l~~  284 (504)
T PF10433_consen  218 YDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLK-------------NGGDYLFVGSEFGDSQLLQ  284 (504)
T ss_dssp             SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEES-------------TT--EEEEEESSS-EEEEE
T ss_pred             ecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEc-------------CCCEEEEEEEecCCcEEEE
Confidence            345566666677778777776664321 11122222 44556666665             22 378888776554443 


Q ss_pred             -c--CCceeeeccCCCCceEEEEeeecCCCCCC------EEEEee---CCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          194 -W--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK------ILASGG---EDATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       194 -d--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~------~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                       .  .-..+..+. .-++|.++++....+....      .|++++   .+|.+++..-.-+-. ........+.+ -..+
T Consensus       285 ~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~-~~~~~~~~l~~-v~~i  361 (504)
T PF10433_consen  285 ISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIE-GLELASSELPG-VTGI  361 (504)
T ss_dssp             EESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE---EEEEEEEST-EEEE
T ss_pred             EeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCce-eeeeeccCCCC-ceEE
Confidence             3  233344444 4678988887522212222      455443   577888874322110 00001111221 2334


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECC---CCccccceecccceecCCCceee-ecCCCeEEEEeCCcEEEEEcCCCce
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTS---TSSAVRSSCCVGMTSVPGVPVDM-KCHESMLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~  337 (501)
                      +.+.....+..+++.+..+ .-+++.+.   ....+...... .+......+.+ .......+=++...|++.+....+.
T Consensus       362 W~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~-~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~  439 (504)
T PF10433_consen  362 WTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEED-GFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKL  439 (504)
T ss_dssp             EEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE----TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSE
T ss_pred             EEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhc-cCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeE
Confidence            4444332224566655554 44555553   22221111111 12222222222 2235555566777899999888777


Q ss_pred             EeeeccC-CCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccc-c---CcccCeEEEEecC
Q 010784          338 VMTPAIC-KPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAEL-D---GHVGSVTQLHMDP  402 (501)
Q Consensus       338 ~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~-~---~h~~~v~~l~~~~  402 (501)
                      ....... ...|.+.+.. ++..+++.+.+.+..+.+......     .... .   .....|.|+..+|
T Consensus       440 ~~~w~~~~~~~I~~a~~~-~~~v~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  440 TQEWKPPAGSIIVAASIN-DPQVLVALSGGELVYFELDDNKIS-----VSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             EEEEE-TTS---SEEEES-SSEEEEEE-TTEEEEEEEETTEEE-----EEEE----EE-SS-EEEEE---
T ss_pred             EEEEeCCCCCeEEEEEEC-CCEEEEEEeCCcEEEEEEECCcee-----eeeeccccccCCCceEEEEeCC
Confidence            7655433 3445555543 344444444444888887764432     0111 0   1356788887766

...

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.72  E-value=2.9  Score=43.87  Aligned_cols=140  Identities=13%  Similarity=-0.049  Sum_probs=85.6

Q ss_pred             cCCCCceEEeeCCcEEEeec--CCeeeEEEEecccccc----cceeccc------CCcceeEEEeeccCcCcccccCCCC
Q 010784          109 VAKPHDHILLDNNDIFSTQG--SSIQNIKIDNFLSESY----YRATLSD------HKARITCMRLFPLHETSLFRSEPQR  176 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g--~~d~~i~vw~~~~~~~----~~~~~~~------h~~~V~~~~~~~~~~~~~~~~~~~~  176 (501)
                      ...++..+...+|+...++-  +.+-.|..+|+.+-..    ...-|..      ...-..++.|+|.-           
T Consensus        99 k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-----------  167 (1405)
T KOG3630|consen   99 KEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-----------  167 (1405)
T ss_pred             ccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-----------
Confidence            34457777777776655544  3455888999874211    1111222      23346678888741           


Q ss_pred             cCcEEEEeeCCCceEEecC---CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784          177 TENVLVTSSCDHSIRLWWK---GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd~---~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                       ....+....|+.|+|...   ......+. -...++|++|+    +.|..++.|-.+|++.-|-..-..+. .+.....
T Consensus       168 -p~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WS----prGKQl~iG~nnGt~vQy~P~leik~-~ip~Pp~  240 (1405)
T KOG3630|consen  168 -PLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWS----PRGKQLFIGRNNGTEVQYEPSLEIKS-EIPEPPV  240 (1405)
T ss_pred             -cchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEec----cccceeeEecCCCeEEEeecccceee-cccCCCc
Confidence             245666777999998862   22222232 46678999998    89999999999999998876543210 0001111


Q ss_pred             ccCCCCceeEEEEee
Q 010784          254 LYGHEKPIKLMSVAG  268 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~  268 (501)
                      .  ....|.+|.|..
T Consensus       241 ~--e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  241 E--ENYRVLSVTWLS  253 (1405)
T ss_pred             C--CCcceeEEEEec
Confidence            1  157899999984

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.72  E-value=20  Score=36.15  Aligned_cols=65  Identities=14%  Similarity=0.076  Sum_probs=43.2

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      ++++.-+|.|.-++.+..||.++++++.+. ...+.. ....+-..+.|..               .-|+++..|..+.-
T Consensus        17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r-~qski~-~~~~p~~nlv~tn---------------hgl~~~tsdrr~la   79 (1636)
T KOG3616|consen   17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPR-RQSKIC-EEAKPKENLVFTN---------------HGLVTATSDRRALA   79 (1636)
T ss_pred             eeeeeecCCCceEEEEecCCcEEEEeeccc-chhhhh-hhcCCccceeeec---------------cceEEEeccchhhe
Confidence            677788899999999999999999998753 221111 1122233344432               44666777888888


Q ss_pred             ec
Q 010784          193 WW  194 (501)
Q Consensus       193 wd  194 (501)
                      |.
T Consensus        80 ~~   81 (1636)
T KOG3616|consen   80 WK   81 (1636)
T ss_pred             ee
Confidence            86

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.51  E-value=21  Score=36.07  Aligned_cols=56  Identities=14%  Similarity=0.118  Sum_probs=40.1

Q ss_pred             CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceee
Q 010784          129 SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQR  200 (501)
Q Consensus       129 ~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~  200 (501)
                      +.-..|+|++..  ++++..+.-....+-.+.|+.              ...|+.-..+|++.||+ .|..+.
T Consensus        61 ~a~~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~--------------~eeLI~v~k~g~v~Vy~~~ge~ie  117 (829)
T KOG2280|consen   61 SARPYIRIFNIS--GQLLGRILWKHGELIGMGWSD--------------DEELICVQKDGTVHVYGLLGEFIE  117 (829)
T ss_pred             ccceeEEEEecc--ccchHHHHhcCCCeeeecccC--------------CceEEEEeccceEEEeecchhhhc
Confidence            445678888877  466555544444788999995              56788889999999998 554443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.46  E-value=12  Score=35.24  Aligned_cols=105  Identities=8%  Similarity=0.030  Sum_probs=71.0

Q ss_pred             CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784          344 CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       344 ~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~  421 (501)
                      ..++|.++.|++|.+.+|+--.++ |.+++....+..  ....++.+.....|....|+.. .+...  .+.-+.+|.+.
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~--l~~~~~ck~k~~~IlGF~W~~s~e~A~i--~~~G~e~y~v~  140 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ--LEYTQECKTKNANILGFCWTSSTEIAFI--TDQGIEFYQVL  140 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchh--hHHHHHhccCcceeEEEEEecCeeEEEE--ecCCeEEEEEc
Confidence            367999999999999999999888 999998544322  1223344444566899999888 44443  33447888765


Q ss_pred             Ccc-cccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          422 TGM-LANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       422 ~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      ..+ .++..     +.+...|+-..|+++-+.+.-++
T Consensus       141 pekrslRlV-----ks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  141 PEKRSLRLV-----KSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hhhhhhhhh-----hhcccCccEEEEccccceEeeec
Confidence            432 23333     34566788888888887655544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.32  E-value=19  Score=35.30  Aligned_cols=157  Identities=12%  Similarity=0.117  Sum_probs=86.5

Q ss_pred             cCCCCceEEeeCCcEEEeecCC--eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSS--IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~--d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      .-.|+.-++|......+.|.-.  .|.++.=|    ...+    |.-+.|..+.|.|.+.         .+...+++...
T Consensus        18 AiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd----s~vi----GqFEhV~GlsW~P~~~---------~~~paLLAVQH   80 (671)
T PF15390_consen   18 AIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD----SKVI----GQFEHVHGLSWAPPCT---------ADTPALLAVQH   80 (671)
T ss_pred             hhccccceEecCCCEEEEEeeeeeCCccccCC----ccEe----eccceeeeeeecCccc---------CCCCceEEEec
Confidence            3456778888876666665532  23333222    1222    4446799999998431         13445666677


Q ss_pred             CCceEEec-------CCceeeeccCC-CC--ce--EEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          187 DHSIRLWW-------KGSCQRCFKGH-NG--PV--STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       187 dg~i~vwd-------~~~~~~~~~~h-~~--~v--~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      ...|.||-       .++.+.....+ ..  +|  ..+.|+    |....|+.-.....-.++++.....    +....+
T Consensus        81 kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH----Pk~~iL~VLT~~dvSV~~sV~~d~s----rVkaDi  152 (671)
T PF15390_consen   81 KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH----PKKAILTVLTARDVSVLPSVHCDSS----RVKADI  152 (671)
T ss_pred             cceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc----CCCceEEEEecCceeEeeeeeeCCc----eEEEec
Confidence            88999996       22222221111 11  11  234676    6666666555444435566655443    123334


Q ss_pred             cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC
Q 010784          255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS  291 (501)
Q Consensus       255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~  291 (501)
                       ...+.|.|.+|..++.+++++.+..=.-++||-...
T Consensus       153 -~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  153 -KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             -cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence             456789999999844444444444445678886544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.14  E-value=1.7  Score=37.36  Aligned_cols=68  Identities=12%  Similarity=0.173  Sum_probs=46.3

Q ss_pred             CCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc--------CcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc
Q 010784          355 PSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD--------GHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       355 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~  423 (501)
                      .++.++++-+.++ +++||+.+.+...+...+..+-        .....|..+.++.+ .-+++- .+|..+.|+..-+
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~   97 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLG   97 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccccc
Confidence            4677788888777 9999999988764442333222        34567888888877 444443 4678899987644

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.99  E-value=1.3  Score=26.22  Aligned_cols=30  Identities=13%  Similarity=0.114  Sum_probs=23.3

Q ss_pred             CcEEEEEEcCCC---cEEEEEcCCc-EEEEecCC
Q 010784          346 PILHSFSIMPSK---SLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       346 ~~v~~v~~~~~~---~~l~~~~~d~-i~iwd~~~  375 (501)
                      +.+.++.|+|+.   .+|+.+-.-+ +.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            357899999853   4777776656 99999995

It contains a characteristic DLL sequence motif.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.15  E-value=21  Score=34.08  Aligned_cols=114  Identities=13%  Similarity=0.132  Sum_probs=63.2

Q ss_pred             cCcEEEEeeCCCceEEec-CCce-----eeeccCCCCceEEEEeeec-CCCCCCEEEEeeCCCcEEEEeccCCCcc---c
Q 010784          177 TENVLVTSSCDHSIRLWW-KGSC-----QRCFKGHNGPVSTLSDKLL-GDGSGKILASGGEDATVRLWSLSSSGKR---G  246 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd-~~~~-----~~~~~~h~~~v~~l~~s~~-~~~~~~~l~sg~~dg~i~iwd~~~~~~~---~  246 (501)
                      +...+++|+..|.++||+ ....     +..-..-..+|..+..-.+ ...+...||. -.-..+.+|.+......   +
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            457999999999999998 1111     1111234578888875422 1222334443 55677888887432210   0


Q ss_pred             cccceeeccCCCCc--eeEEEEeec----CCeEEEEEeCCCeEEEEECCCC
Q 010784          247 QQALKATLYGHEKP--IKLMSVAGH----KSFLLVTISKDSKVRVWDTSTS  291 (501)
Q Consensus       247 ~~~~~~~~~~~~~~--v~~l~~~~~----~~~~l~s~s~dg~v~vwd~~~~  291 (501)
                      ....+.....|.-.  ...+.+-|-    +..++..-+.||.+.+++-+..
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~  165 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF  165 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE
Confidence            11112222223221  222333221    2468888999999999997764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.11  E-value=2.9  Score=35.94  Aligned_cols=71  Identities=15%  Similarity=0.177  Sum_probs=47.7

Q ss_pred             CCCCEEEEeeCCCcEEEEeccCCCcccccccee-ecc-------CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC
Q 010784          220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKA-TLY-------GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS  291 (501)
Q Consensus       220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~-------~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~  291 (501)
                      ..+++|++-..+|.+++||+.+++.......+. .+.       .....|..+.+.. +|.-+++-+ +|..+.|+..-+
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccccc
Confidence            467889999999999999999876522211111 122       3556788888874 565565554 578899987655


Q ss_pred             c
Q 010784          292 S  292 (501)
Q Consensus       292 ~  292 (501)
                      .
T Consensus        98 ~   98 (219)
T PF07569_consen   98 C   98 (219)
T ss_pred             e
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.06  E-value=10  Score=36.31  Aligned_cols=146  Identities=14%  Similarity=0.131  Sum_probs=88.8

Q ss_pred             EEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCcee
Q 010784          123 IFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQ  199 (501)
Q Consensus       123 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~  199 (501)
                      .++..|+....++-.|++.| +.+..+.-|.+.  -+.|.|...-...     .+.+.|+--| +..|---|   .|..+
T Consensus       481 li~~dg~~~~kLykmDIErG-kvveeW~~~ddv--vVqy~p~~kf~qm-----t~eqtlvGlS-~~svFrIDPR~~gNKi  551 (776)
T COG5167         481 LIYLDGGERDKLYKMDIERG-KVVEEWDLKDDV--VVQYNPYFKFQQM-----TDEQTLVGLS-DYSVFRIDPRARGNKI  551 (776)
T ss_pred             eEEecCCCcccceeeecccc-eeeeEeecCCcc--eeecCCchhHHhc-----CccceEEeec-ccceEEecccccCCce
Confidence            44557777777888888885 888888877765  5777774210000     0233444444 44443335   34332


Q ss_pred             eecc----CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784          200 RCFK----GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV  275 (501)
Q Consensus       200 ~~~~----~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  275 (501)
                      ....    .......|..-     ....+++.|+..|.|++||--...      ....+.+-...|..|.... +|..++
T Consensus       552 ~v~esKdY~tKn~Fss~~t-----TesGyIa~as~kGDirLyDRig~r------AKtalP~lG~aIk~idvta-~Gk~il  619 (776)
T COG5167         552 KVVESKDYKTKNKFSSGMT-----TESGYIAAASRKGDIRLYDRIGKR------AKTALPGLGDAIKHIDVTA-NGKHIL  619 (776)
T ss_pred             eeeeehhcccccccccccc-----ccCceEEEecCCCceeeehhhcch------hhhcCcccccceeeeEeec-CCcEEE
Confidence            2211    12223333332     456799999999999999976543      2455667778899999986 555555


Q ss_pred             EEeCCCeEEEEECCC
Q 010784          276 TISKDSKVRVWDTST  290 (501)
Q Consensus       276 s~s~dg~v~vwd~~~  290 (501)
                      +.+. ..+.+-|++-
T Consensus       620 aTCk-~yllL~d~~i  633 (776)
T COG5167         620 ATCK-NYLLLTDVPI  633 (776)
T ss_pred             Eeec-ceEEEEeccc
Confidence            5444 5688888764

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.89  E-value=9.1  Score=29.52  Aligned_cols=117  Identities=14%  Similarity=0.129  Sum_probs=69.5

Q ss_pred             eEEeeCCcEEEeecCCeeeEEEEeccccc-------ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          115 HILLDNNDIFSTQGSSIQNIKIDNFLSES-------YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       115 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      .-.|+.....|+++..-+.|.|++.....       ..+..| .-...|++|+--+...        ..+...|+.|+ .
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~--------~~~~D~LliGt-~   72 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKP--------DDGRDCLLIGT-Q   72 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCC--------CCCcCEEEEec-c
Confidence            34567777788888888999999876421       112222 2345677776554210        12456777777 4


Q ss_pred             CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCC
Q 010784          188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSS  242 (501)
Q Consensus       188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~  242 (501)
                      ..+..|| ....-..++.-...|+++.+--..+....+++.|+ +..|.-||.+..
T Consensus        73 t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~  127 (136)
T PF14781_consen   73 TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGN  127 (136)
T ss_pred             ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCc
Confidence            5788998 33333334445577888877433333455666664 456666666544

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=88.78  E-value=0.062  Score=47.34  Aligned_cols=50  Identities=18%  Similarity=0.236  Sum_probs=46.0

Q ss_pred             ccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhc
Q 010784           19 AIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQW   68 (501)
Q Consensus        19 ~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~   68 (501)
                      .+..||..++..++++|..+++.++|.|++++..+.+-..+|.+-+.+.|
T Consensus         7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l   56 (386)
T KOG4408|consen    7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL   56 (386)
T ss_pred             chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence            45668999999999999999999999999999999999999999888865

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.70  E-value=5  Score=40.66  Aligned_cols=117  Identities=9%  Similarity=-0.015  Sum_probs=77.3

Q ss_pred             cCCCCceEEee--CCcEEEeecCCeeeEEEEecccccc-------------------cceecccCCcceeEEEee--ccC
Q 010784          109 VAKPHDHILLD--NNDIFSTQGSSIQNIKIDNFLSESY-------------------YRATLSDHKARITCMRLF--PLH  165 (501)
Q Consensus       109 ~~~~i~~~~~~--~~~~~~~~g~~d~~i~vw~~~~~~~-------------------~~~~~~~h~~~V~~~~~~--~~~  165 (501)
                      .+..|+.|.+.  .+..+|+.+..||.|.+|..++-..                   +...+ .-...+++++++  .  
T Consensus        99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~--  175 (717)
T PF08728_consen   99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYK--  175 (717)
T ss_pred             CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecC--
Confidence            44558888777  5778899999999999997643110                   01111 123467777776  4  


Q ss_pred             cCcccccCCCCcCcEEEEeeCCCceEEec--C--Cc-eeeeccCCCCceEEEEeeecC-CCCCC-EEEEeeCCCcEEEEe
Q 010784          166 ETSLFRSEPQRTENVLVTSSCDHSIRLWW--K--GS-CQRCFKGHNGPVSTLSDKLLG-DGSGK-ILASGGEDATVRLWS  238 (501)
Q Consensus       166 ~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~--~~-~~~~~~~h~~~v~~l~~s~~~-~~~~~-~l~sg~~dg~i~iwd  238 (501)
                                 ..+++|.++....|.||-  .  .+ ....-..|...|-+++|.... ++.|. .|++++-.|.+.+|+
T Consensus       176 -----------~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  176 -----------KSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             -----------cceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence                       578888888888999984  1  11 111112367789999996322 12232 788899999999988


Q ss_pred             c
Q 010784          239 L  239 (501)
Q Consensus       239 ~  239 (501)
                      +
T Consensus       245 I  245 (717)
T PF08728_consen  245 I  245 (717)
T ss_pred             E
Confidence            8

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13684 Ycf48-like protein; Provisional

Probab=88.69  E-value=20  Score=33.26  Aligned_cols=114  Identities=15%  Similarity=-0.025  Sum_probs=64.9

Q ss_pred             CCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784          345 KPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       345 ~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      ...++++.+.++++.++++..+.+++=....+..   .+.+..- ......+.++.+.++ .++++| .+|.+. .....
T Consensus       214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~s---W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~  288 (334)
T PRK13684        214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLES---WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDG  288 (334)
T ss_pred             cccceeeeEcCCCCEEEEecCCEEEEccCCCCCc---cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCC
Confidence            4567889999999888877654443222333221   1111110 011235788889888 777776 777655 34444


Q ss_pred             cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      |+.-......  ..-......+.|..+++.+++|   ..|.|.-++
T Consensus       289 G~tW~~~~~~--~~~~~~~~~~~~~~~~~~~~~G---~~G~il~~~  329 (334)
T PRK13684        289 GKTWEKDPVG--EEVPSNFYKIVFLDPEKGFVLG---QRGVLLRYV  329 (334)
T ss_pred             CCCCeECCcC--CCCCcceEEEEEeCCCceEEEC---CCceEEEec
Confidence            4443333210  1112356777888777777776   558877665

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.47  E-value=14  Score=31.21  Aligned_cols=106  Identities=15%  Similarity=0.144  Sum_probs=59.2

Q ss_pred             cEEEEeeCCCceEEec-C---CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC------CcEEEE---eccC-CCc
Q 010784          179 NVLVTSSCDHSIRLWW-K---GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED------ATVRLW---SLSS-SGK  244 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd-~---~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d------g~i~iw---d~~~-~~~  244 (501)
                      +.|+.+...+.|.+|+ .   .+.+..|. .-+.|..+.++    ..|++|+|-=.+      ..+|+|   .... ...
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~----~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~  103 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYS----EAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS  103 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEec----cccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence            3443335567799998 2   23344554 34789999997    789999985322      155654   2221 111


Q ss_pred             cc-----------------cc-cceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784          245 RG-----------------QQ-ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS  292 (501)
Q Consensus       245 ~~-----------------~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~  292 (501)
                      +.                 .. -.+..+. -..++.+++..|..|++++. + ++.+.+|.+....
T Consensus       104 ~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen  104 PVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKYQT  166 (215)
T ss_pred             cEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEEEE
Confidence            00                 00 0001111 23456788888877776654 3 3678999876543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.38  E-value=14  Score=30.99  Aligned_cols=185  Identities=12%  Similarity=0.049  Sum_probs=87.7

Q ss_pred             eEEEEeecCCeEEEEEeC--CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe--CCcEEEEEcCCCce
Q 010784          262 KLMSVAGHKSFLLVTISK--DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS--GSSVVTIDLRTMQK  337 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~  337 (501)
                      ..+.+.  ++.++.+.+.  ...|++||+++++.+.+..... .  ...-..+.-.++..+..+  .+.-..+|..+.+.
T Consensus        49 QGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~--~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~  123 (262)
T COG3823          49 QGLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-D--TVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE  123 (262)
T ss_pred             cceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCC-c--cccccceeeccceEEEEEeccceeEEEChHHhhh
Confidence            345554  5667777654  4569999999998765543321 0  000111112223333322  33556677777776


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEc-CCcEEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecCCeEEEEecCCCcE
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGG-IGKAMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDPYKIVTGGRDDLRI  415 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~l~~gs~dg~i  415 (501)
                      +..+.- ++.-..++.  |+.-|..+. ...++.-|..+....  .....++.+- -..++-+.|-...+.|-.=.+..|
T Consensus       124 lg~~~y-~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~--~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I  198 (262)
T COG3823         124 LGRFSY-EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAEL--DTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRI  198 (262)
T ss_pred             hccccc-CCcceeeec--CCcceEeeCCceEEEecCHHHhhhc--ceEEEEECCeecccccceeeeccEEEEeeeeecce
Confidence            655442 333344443  444444444 333777777664433  1111111110 112223333333333322233344


Q ss_pred             EEEeCCCcccccccccC-------CCCCCCcceeeeEeeccc-cEEEEe
Q 010784          416 NIWETDTGMLANSLLCN-------YPEEADISTGCSAMAVSG-CRIVTA  456 (501)
Q Consensus       416 ~iwd~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g-~~l~s~  456 (501)
                      ...+..+|+.+..+...       ....+....+.+++.|++ +++++|
T Consensus       199 ~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         199 ARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            44555555544433211       112345567889999988 555555

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.29  E-value=13  Score=38.48  Aligned_cols=78  Identities=15%  Similarity=0.295  Sum_probs=50.5

Q ss_pred             CcEEEEEEcCCCcEEEEEcCCcEEEEecCCC----------CCCCCCC--Cccc--c-cCcccCeEEEEecCC----eEE
Q 010784          346 PILHSFSIMPSKSLICTGGIGKAMTWDIRRS----------QDAVKPQ--PMAE--L-DGHVGSVTQLHMDPY----KIV  406 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~----------~~~~~~~--~~~~--~-~~h~~~v~~l~~~~~----~~l  406 (501)
                      -.|..|.++|+|.+++..+..+|.|-.+...          +.....+  ++..  + ..+...|..+.|+|.    ..+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4588999999999999999888666665421          1100000  0000  1 123457889999985    444


Q ss_pred             EEecCCCcEEEEeCCCc
Q 010784          407 TGGRDDLRINIWETDTG  423 (501)
Q Consensus       407 ~~gs~dg~i~iwd~~~~  423 (501)
                      +.-+.|+++++||+...
T Consensus       165 ~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEecCCEEEEEecCCC
Confidence            44468999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.12  E-value=18  Score=32.08  Aligned_cols=313  Identities=10%  Similarity=0.069  Sum_probs=172.1

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS  189 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  189 (501)
                      +.+..+.......++.+|..--...+|+..... ......-.-.+-+..+.++.               ++...+..+.-
T Consensus        43 ~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse---------------~yvyvad~ssG  107 (370)
T COG5276          43 KGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSE---------------EYVYVADWSSG  107 (370)
T ss_pred             CCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEecc---------------cEEEEEcCCCc
Confidence            557788888888888888776777777755210 01111122345677777764               67777777777


Q ss_pred             eEEec--C---CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          190 IRLWW--K---GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       190 i~vwd--~---~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      ++|.|  +   ...+..+. ..+--.++..      .|++.+.+..|.-+.+.|+.+...   ..+.............+
T Consensus       108 L~IvDIS~P~sP~~~~~ln-t~gyaygv~v------sGn~aYVadlddgfLivdvsdpss---P~lagrya~~~~d~~~v  177 (370)
T COG5276         108 LRIVDISTPDSPTLIGFLN-TDGYAYGVYV------SGNYAYVADLDDGFLIVDVSDPSS---PQLAGRYALPGGDTHDV  177 (370)
T ss_pred             eEEEeccCCCCcceecccc-CCceEEEEEe------cCCEEEEeeccCcEEEEECCCCCC---ceeeeeeccCCCCceeE
Confidence            99998  1   22222222 2233445554      588999888777778889987654   12333344444444566


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeecc
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~  343 (501)
                      +++   +++-..+..|+-+.+-|+......   ..............+..+++..+++..+ .+.+.|....+....+..
T Consensus       178 ~IS---Gn~AYvA~~d~GL~ivDVSnp~sP---vli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gs  251 (370)
T COG5276         178 AIS---GNYAYVAWRDGGLTIVDVSNPHSP---VLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGS  251 (370)
T ss_pred             EEe---cCeEEEEEeCCCeEEEEccCCCCC---eEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeec
Confidence            665   456777778999999999876421   2223334444667777777777777654 677777776664443332


Q ss_pred             C-CCc---EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784          344 C-KPI---LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       344 ~-~~~---v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i  417 (501)
                      . ...   ++.+..  .+++......+. +-+-|+.+....   .....+......-..+..... ..++-  .+ ...+
T Consensus       252 yet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~sp---fl~ss~~t~g~~a~gi~ay~~y~yiad--kn-~g~v  323 (370)
T COG5276         252 YETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSP---FLSSSLDTAGYQAAGIRAYGNYNYIAD--KN-TGAV  323 (370)
T ss_pred             cccCCcccccceec--ccceeeeeccccCceeEeccCCCCC---chhccccCCCccccceEEecCeeEecc--CC-ceEE
Confidence            1 122   222333  345555555444 777777765432   111111111123334444444 22222  11 3344


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      -+....+.+...     .+....+.+.+.+-+.+.+.+.-++  +-+.+|+.
T Consensus       324 V~~s~~s~m~~~-----~g~~ti~~s~~v~~~~q~~y~~d~~--~gl~i~~~  368 (370)
T COG5276         324 VDASPPSMMDKR-----PGRPTIGQSCDVSVDTQIIYSTDYN--GGLSIIEY  368 (370)
T ss_pred             EeCCChhhcccc-----cCcceEeeecceEEEeeEEEEeecC--CCEEEEEe
Confidence            444433332222     1222334555666667777776643  77777775

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.08  E-value=23  Score=38.33  Aligned_cols=78  Identities=8%  Similarity=0.140  Sum_probs=53.5

Q ss_pred             CCCcEEEEEEcCCCcEEEEEcCCcEEE--EecCCC---C-CC----C-------CCCCccccc-CcccCeEEEEecCC-e
Q 010784          344 CKPILHSFSIMPSKSLICTGGIGKAMT--WDIRRS---Q-DA----V-------KPQPMAELD-GHVGSVTQLHMDPY-K  404 (501)
Q Consensus       344 ~~~~v~~v~~~~~~~~l~~~~~d~i~i--wd~~~~---~-~~----~-------~~~~~~~~~-~h~~~v~~l~~~~~-~  404 (501)
                      ..-.|+++....+|+.+.+|-+|+|+-  |....+   + +.    .       -+. +..+. .+..+|..+.++.. .
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID~SR~  255 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITIDNSRN  255 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEeccccc
Confidence            356688888888999999998886332  222211   0 00    0       011 22233 56789999999998 8


Q ss_pred             EEEEecCCCcEEEEeCCC
Q 010784          405 IVTGGRDDLRINIWETDT  422 (501)
Q Consensus       405 ~l~~gs~dg~i~iwd~~~  422 (501)
                      ++.+-+..|+|.+||+..
T Consensus       256 IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  256 ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeeeccCceEEEEEccC
Confidence            888888999999999976

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.88  E-value=1.4  Score=45.92  Aligned_cols=117  Identities=11%  Similarity=0.015  Sum_probs=73.2

Q ss_pred             CcEEEEEEcCCCcEEEEE--cCCc-EEEEecCCCCCCCC--CCCcc---cccCcccCeEEEEecCC--eEEEEecCCCcE
Q 010784          346 PILHSFSIMPSKSLICTG--GIGK-AMTWDIRRSQDAVK--PQPMA---ELDGHVGSVTQLHMDPY--KIVTGGRDDLRI  415 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~--~~d~-i~iwd~~~~~~~~~--~~~~~---~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i  415 (501)
                      -.+..+...+|+...++.  +.|. |..||++.......  ..++.   +......-..++.|+|.  ...+....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            345566667776554433  3555 99999987543200  01111   11112334567889998  444445689999


Q ss_pred             EEEeCCCc-ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          416 NIWETDTG-MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       416 ~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ++..+... ....++      .-....++++|+|.|+.++.|-  +.|++.-|...
T Consensus       181 ~V~~~~~~~~~v~s~------p~t~~~Tav~WSprGKQl~iG~--nnGt~vQy~P~  228 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSF------PVTNSQTAVLWSPRGKQLFIGR--NNGTEVQYEPS  228 (1405)
T ss_pred             hhhhhhhhhhhhccc------CcccceeeEEeccccceeeEec--CCCeEEEeecc
Confidence            99887532 222232      2356789999999999999998  77998888754

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=87.76  E-value=19  Score=31.85  Aligned_cols=147  Identities=12%  Similarity=0.029  Sum_probs=84.8

Q ss_pred             CCceEEeeCCcEEEeecC---CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          112 PHDHILLDNNDIFSTQGS---SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~---~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      .+.+.++++++..+|.-.   ....+.++...  ......+.+.  .+..-.|.+             ++...+....+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~--~l~~PS~d~-------------~g~~W~v~~~~~   87 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGG--SLTRPSWDP-------------DGWVWTVDDGSG   87 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCC--ccccccccC-------------CCCEEEEEcCCC
Confidence            478899999998766443   34455555544  2333333333  677777777             777777766666


Q ss_pred             ceEEec---CCcee-eec--cCCCCceEEEEeeecCCCCCCEEEEee---CCCcEEEEeccCCCcc---ccccceeeccC
Q 010784          189 SIRLWW---KGSCQ-RCF--KGHNGPVSTLSDKLLGDGSGKILASGG---EDATVRLWSLSSSGKR---GQQALKATLYG  256 (501)
Q Consensus       189 ~i~vwd---~~~~~-~~~--~~h~~~v~~l~~s~~~~~~~~~l~sg~---~dg~i~iwd~~~~~~~---~~~~~~~~~~~  256 (501)
                      ..+++.   .+... ...  ..-.+.|+.+.+|    ++|..++.-.   .++.|.+=-+......   ...........
T Consensus        88 ~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vS----pDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~  163 (253)
T PF10647_consen   88 GVRVVRDSASGTGEPVEVDWPGLRGRITALRVS----PDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP  163 (253)
T ss_pred             ceEEEEecCCCcceeEEecccccCCceEEEEEC----CCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc
Confidence            667662   22221 111  1112289999997    8998877655   3577777765543321   00111222223


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCC
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKD  280 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~d  280 (501)
                      ....++.+.|.+ +..+++.+...
T Consensus       164 ~~~~v~~v~W~~-~~~L~V~~~~~  186 (253)
T PF10647_consen  164 LLSDVTDVAWSD-DSTLVVLGRSA  186 (253)
T ss_pred             ccCcceeeeecC-CCEEEEEeCCC
Confidence            456789999996 55555555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.56  E-value=22  Score=32.32  Aligned_cols=275  Identities=12%  Similarity=0.073  Sum_probs=120.3

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec--ccC---CcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL--SDH---KARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--~~h---~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ...++..|.|..+..-+++|.....++--|   +.+--...  ...   .-..++|.|..              ...+++
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~g~il~T~D---GG~tW~~~~~~~~~~~~~~l~~I~f~~--------------~~g~iv   77 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAYGTILKTTD---GGKTWQPVSLDLDNPFDYHLNSISFDG--------------NEGWIV   77 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETTTEEEEESS---TTSS-EE-----S-----EEEEEEEET--------------TEEEEE
T ss_pred             CCCceEEEEEecCCEEEEEecCCEEEEECC---CCccccccccCCCccceeeEEEEEecC--------------CceEEE
Confidence            344678888887777777787644333322   21111111  111   12356777754              344554


Q ss_pred             eeCCCceEEe-cCCceeeecc---CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          184 SSCDHSIRLW-WKGSCQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       184 ~~~dg~i~vw-d~~~~~~~~~---~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      | ..|.|.-- |.++.-..+.   .-.+....+...    .++..++. +..|.  ||....+..  .+  ......-.+
T Consensus        78 G-~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l----~~~~~~l~-~~~G~--iy~T~DgG~--tW--~~~~~~~~g  145 (302)
T PF14870_consen   78 G-EPGLLLHTTDGGKTWERVPLSSKLPGSPFGITAL----GDGSAELA-GDRGA--IYRTTDGGK--TW--QAVVSETSG  145 (302)
T ss_dssp             E-ETTEEEEESSTTSS-EE----TT-SS-EEEEEEE----ETTEEEEE-ETT----EEEESSTTS--SE--EEEE-S---
T ss_pred             c-CCceEEEecCCCCCcEEeecCCCCCCCeeEEEEc----CCCcEEEE-cCCCc--EEEeCCCCC--Ce--eEcccCCcc
Confidence            4 45554433 2333222211   112222333332    23333333 44454  444444332  11  222334456


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      .+..+..++ ++.++++++......-||--...-..                                            
T Consensus       146 s~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~--------------------------------------------  180 (302)
T PF14870_consen  146 SINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQP--------------------------------------------  180 (302)
T ss_dssp             -EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EE--------------------------------------------
T ss_pred             eeEeEEECC-CCcEEEEECcccEEEEecCCCccceE--------------------------------------------
Confidence            777777775 77777777665555667654321100                                            


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecC-CCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIR-RSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN  416 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~  416 (501)
                      .-+.-...|.++.|.|++.+.+.+ .++ |+.=+.. ..+.-  .+++..+....-.+..+++.++ .+.++| ..|.+.
T Consensus       181 ~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w--~~~~~~~~~~~~~~ld~a~~~~~~~wa~g-g~G~l~  256 (302)
T PF14870_consen  181 HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW--SEPIIPIKTNGYGILDLAYRPPNEIWAVG-GSGTLL  256 (302)
T ss_dssp             EE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-----B-TTSS--S-EEEEEESSSS-EEEEE-STT-EE
T ss_pred             EccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc--ccccCCcccCceeeEEEEecCCCCEEEEe-CCccEE
Confidence            011125678999999998887766 555 7777622 11111  1111222222345889999988 788876 555443


Q ss_pred             EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784          417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR  467 (501)
Q Consensus       417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w  467 (501)
                       .....|+.=......  ..-......+.|..+.+-++.|   ++|.|.-|
T Consensus       257 -~S~DgGktW~~~~~~--~~~~~n~~~i~f~~~~~gf~lG---~~G~ll~~  301 (302)
T PF14870_consen  257 -VSTDGGKTWQKDRVG--ENVPSNLYRIVFVNPDKGFVLG---QDGVLLRY  301 (302)
T ss_dssp             -EESSTTSS-EE-GGG--TTSSS---EEEEEETTEEEEE----STTEEEEE
T ss_pred             -EeCCCCccceECccc--cCCCCceEEEEEcCCCceEEEC---CCcEEEEe
Confidence             334445433333211  1224457788888777777776   56877654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.43  E-value=9.6  Score=40.97  Aligned_cols=151  Identities=14%  Similarity=0.117  Sum_probs=92.1

Q ss_pred             CeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEc-C-------C-CcEEEEEcCCcEEEEecCCCCCCCCCCC---
Q 010784          317 SMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIM-P-------S-KSLICTGGIGKAMTWDIRRSQDAVKPQP---  384 (501)
Q Consensus       317 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~-~-------~-~~~l~~~~~d~i~iwd~~~~~~~~~~~~---  384 (501)
                      ...+++.++.+.+|+.+++.....+.+-...|..|..- |       . ..+|+.++.-.|.++-+...+.......   
T Consensus        91 ~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~  170 (1311)
T KOG1900|consen   91 GRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNT  170 (1311)
T ss_pred             cceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccc
Confidence            34678888999999999988877777777777766542 2       2 3345555543366654433221100000   


Q ss_pred             cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC----Cc---c--------------cccccccCCCCCCCccee
Q 010784          385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD----TG---M--------------LANSLLCNYPEEADISTG  442 (501)
Q Consensus       385 ~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~----~~---~--------------~~~~~~~~~~~~~~~~v~  442 (501)
                      ..++......|+++....+ +++.+| .||  .+|.+.    ++   +              .+.++. ..+..+..+|.
T Consensus       171 ~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~-~~~~~~~dpI~  246 (1311)
T KOG1900|consen  171 SFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL-SVPGSSKDPIR  246 (1311)
T ss_pred             ceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhh-cCCCCCCCcce
Confidence            0112222456888886666 999987 777  555542    11   1              011111 01124567899


Q ss_pred             eeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          443 CSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       443 ~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      .+........+.+-+  +.|.|.+|++...+
T Consensus       247 qi~ID~SR~IlY~ls--ek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  247 QITIDNSRNILYVLS--EKGTVSAYDIGGNG  275 (1311)
T ss_pred             eeEeccccceeeeec--cCceEEEEEccCCC
Confidence            999988888888888  78999999988744

>PRK10115 protease 2; Provisional

Probab=86.78  E-value=42  Score=34.83  Aligned_cols=109  Identities=7%  Similarity=0.015  Sum_probs=59.8

Q ss_pred             CceEEeeCCcEEEeec-----CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          113 HDHILLDNNDIFSTQG-----SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g-----~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      +..+.++|+|++++.+     +....+++-|+.++..+...+.+-   -..++|.+             |++.|+....+
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~-------------D~~~~~y~~~~  192 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWAN-------------DSWTFYYVRKH  192 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEee-------------CCCEEEEEEec
Confidence            6677889999998854     335678888988763222333221   14589998             66655554432


Q ss_pred             ------CceEEec--CC--ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC---CCcEEEEecc
Q 010784          188 ------HSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE---DATVRLWSLS  240 (501)
Q Consensus       188 ------g~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~---dg~i~iwd~~  240 (501)
                            ..|..++  ++  .....+........-..+.   ..++++++..+.   ++.+.+++..
T Consensus       193 ~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~---s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        193 PVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHK---TTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             CCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEE---cCCCCEEEEEEECCccccEEEEECc
Confidence                  2455555  33  2223333323333312222   246666654443   4578888854

>PRK10115 protease 2; Provisional

Probab=86.61  E-value=43  Score=34.77  Aligned_cols=240  Identities=11%  Similarity=0.001  Sum_probs=111.2

Q ss_pred             ceEEEEeeecCCCCCCEEEEee-----CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC--
Q 010784          208 PVSTLSDKLLGDGSGKILASGG-----EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD--  280 (501)
Q Consensus       208 ~v~~l~~s~~~~~~~~~l~sg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d--  280 (501)
                      .+..+.++    +++++|+.+.     ....|++-|+.++..     +...+.+ ..  ..++|.+++..++++...+  
T Consensus       128 ~l~~~~~S----pdg~~la~~~d~~G~E~~~l~v~d~~tg~~-----l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~  195 (686)
T PRK10115        128 TLGGMAIT----PDNTIMALAEDFLSRRQYGIRFRNLETGNW-----YPELLDN-VE--PSFVWANDSWTFYYVRKHPVT  195 (686)
T ss_pred             EEeEEEEC----CCCCEEEEEecCCCcEEEEEEEEECCCCCC-----CCccccC-cc--eEEEEeeCCCEEEEEEecCCC
Confidence            34556665    7888777543     334688888887652     1222222 11  4588987444455554432  


Q ss_pred             ---CeEEEEECCCCccccceecccceecCCCc-eeee-c-CCCeEEEEeC----CcEEEEEcC--CCceEeeeccCCCcE
Q 010784          281 ---SKVRVWDTSTSSAVRSSCCVGMTSVPGVP-VDMK-C-HESMLYIASG----SSVVTIDLR--TMQKVMTPAICKPIL  348 (501)
Q Consensus       281 ---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~~~----~~i~~~d~~--~~~~~~~~~~~~~~v  348 (501)
                         ..|..+++.++.....  .+.. ...... .... . +...+++.+.    +.+.+++..  .+.....+....+..
T Consensus       196 ~~~~~v~~h~lgt~~~~d~--lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  272 (686)
T PRK10115        196 LLPYQVWRHTIGTPASQDE--LVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHE  272 (686)
T ss_pred             CCCCEEEEEECCCChhHCe--EEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCE
Confidence               3577788887732111  1111 111111 1111 1 3333343332    267777742  333222222222333


Q ss_pred             EEEEEcCCCcEEEEEcCCc--EEEE--ecCCCCCCCCCCCcccccCc-c-cCeEEEEecCCeEEEEecCCCcEEEEeCCC
Q 010784          349 HSFSIMPSKSLICTGGIGK--AMTW--DIRRSQDAVKPQPMAELDGH-V-GSVTQLHMDPYKIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       349 ~~v~~~~~~~~l~~~~~d~--i~iw--d~~~~~~~~~~~~~~~~~~h-~-~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~  422 (501)
                      ..+. +..+.+++....+.  -+|.  ++.....      ...+-.+ . ..|..+.+..+.++++...+|.-+++-+..
T Consensus       273 ~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~------~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~  345 (686)
T PRK10115        273 YSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQ------WEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINR  345 (686)
T ss_pred             EEEE-eCCCEEEEEEcCCCCCceEEEecCCCccc------CeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcC
Confidence            3333 33344444333222  4444  4432111      1233333 2 368888888777777777788766665442


Q ss_pred             -cccccccccCCCCCCCcceeeeEee--cccc-EEEEee-cCCCceEEEeeccCCc
Q 010784          423 -GMLANSLLCNYPEEADISTGCSAMA--VSGC-RIVTAS-YGEPGLLQFRDFSNAT  473 (501)
Q Consensus       423 -~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~-~l~s~~-~d~~g~i~~w~~~~~~  473 (501)
                       +..+..+...    ....+..+.++  +++. ++++.+ ...-+.+..+|...+.
T Consensus       346 ~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        346 KTREVIGIAFD----DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CCCceEEecCC----CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence             2233333210    11122333344  3433 443332 2255677777776544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=86.48  E-value=27  Score=32.36  Aligned_cols=50  Identities=8%  Similarity=-0.002  Sum_probs=33.3

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEeccccc-ccce----ecccCCcceeEEEeec
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRA----TLSDHKARITCMRLFP  163 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~----~~~~h~~~V~~~~~~~  163 (501)
                      +..|++.|+|.++++-- .|.|.+.+..... ..+.    +..........++++|
T Consensus         4 P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p   58 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHP   58 (331)
T ss_dssp             EEEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred             ceEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceecc
Confidence            57899999999888755 8999998833211 1121    2234456789999998

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.24  E-value=37  Score=36.77  Aligned_cols=25  Identities=16%  Similarity=0.268  Sum_probs=21.7

Q ss_pred             cCC-eEEEEecCCCcEEEEeCCCccc
Q 010784          401 DPY-KIVTGGRDDLRINIWETDTGML  425 (501)
Q Consensus       401 ~~~-~~l~~gs~dg~i~iwd~~~~~~  425 (501)
                      +++ ..++++..||.+.+||...++.
T Consensus       243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  243 SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccCCceEEEEEecCCEEeeecCCCce
Confidence            666 8888889999999999998755

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.23  E-value=28  Score=33.69  Aligned_cols=112  Identities=17%  Similarity=0.159  Sum_probs=59.4

Q ss_pred             CCcEEEEEEcCCCcEEEEEcC-CcEEEEecCCCCCCCCCCCcccc-c-CcccCeEEEEecCCe--------EEEEecC--
Q 010784          345 KPILHSFSIMPSKSLICTGGI-GKAMTWDIRRSQDAVKPQPMAEL-D-GHVGSVTQLHMDPYK--------IVTGGRD--  411 (501)
Q Consensus       345 ~~~v~~v~~~~~~~~l~~~~~-d~i~iwd~~~~~~~~~~~~~~~~-~-~h~~~v~~l~~~~~~--------~l~~gs~--  411 (501)
                      -.....|+|.|||++|++--. +.|++++........ ...+..+ . .-.+....|+++|+.        +.++-+.  
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~-~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV-VFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee-eecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            345678999999998888874 558888765433210 0001111 1 125678999999873        3333211  


Q ss_pred             -------CCcEEEEeCCCc--cc--ccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          412 -------DLRINIWETDTG--ML--ANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       412 -------dg~i~iwd~~~~--~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                             ...|.-|.+...  ..  ...+....+......-..++|.|||.+.++.+
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~G  164 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIG  164 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEEC
Confidence                   234555554321  11  11111111111122345678999998777655

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.86  E-value=31  Score=33.39  Aligned_cols=82  Identities=13%  Similarity=0.073  Sum_probs=48.7

Q ss_pred             cEEEEEEcCCCcEEEEEcCCcEEEEecC----------CCCCCCC------CCCcccccCcccCeEEEEecCC----eEE
Q 010784          347 ILHSFSIMPSKSLICTGGIGKAMTWDIR----------RSQDAVK------PQPMAELDGHVGSVTQLHMDPY----KIV  406 (501)
Q Consensus       347 ~v~~v~~~~~~~~l~~~~~d~i~iwd~~----------~~~~~~~------~~~~~~~~~h~~~v~~l~~~~~----~~l  406 (501)
                      .|..+..++.|..++-.+.+||.+..+.          .++....      ...+.+-. ..-.+..++|+|+    .-+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccCCceE
Confidence            4678889999999998888885555441          1111100      00011111 1224566789986    233


Q ss_pred             EEecCCCcEEEEeCCCccccccc
Q 010784          407 TGGRDDLRINIWETDTGMLANSL  429 (501)
Q Consensus       407 ~~gs~dg~i~iwd~~~~~~~~~~  429 (501)
                      ..-+.|..|++||....+.+...
T Consensus       184 ~iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             EEEecCcEEEEEecCCcchhhcc
Confidence            33358999999999877666433

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.33  E-value=8.5  Score=38.72  Aligned_cols=37  Identities=16%  Similarity=0.297  Sum_probs=26.2

Q ss_pred             cCeEEEEecC----C-eEEEEecCCCcEEEEeCCCccccccc
Q 010784          393 GSVTQLHMDP----Y-KIVTGGRDDLRINIWETDTGMLANSL  429 (501)
Q Consensus       393 ~~v~~l~~~~----~-~~l~~gs~dg~i~iwd~~~~~~~~~~  429 (501)
                      ..+..++++.    + .++++-+.|+++|+||+.+++++.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            3455555555    4 77777789999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=84.76  E-value=35  Score=32.05  Aligned_cols=209  Identities=11%  Similarity=0.138  Sum_probs=112.4

Q ss_pred             CCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCE--EEEee-CC---CcEEEEeccCCCcccc
Q 010784          175 QRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKI--LASGG-ED---ATVRLWSLSSSGKRGQ  247 (501)
Q Consensus       175 ~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~--l~sg~-~d---g~i~iwd~~~~~~~~~  247 (501)
                      +|...+++...+++-+.+|| .|+.++.+..  +.++.+....-..-.|+.  |+.++ .+   .+|++|.+.....   
T Consensus        65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---  139 (381)
T PF02333_consen   65 DPAKSLIIGTDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---  139 (381)
T ss_dssp             -GGG-EEEEEETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---
T ss_pred             CcccceEEEEeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---
Confidence            34677888888899999999 8888887752  344444331000012222  33443 32   4699998874321   


Q ss_pred             ccceeeccC-------CCCceeEEEEee--cC-CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCC
Q 010784          248 QALKATLYG-------HEKPIKLMSVAG--HK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHES  317 (501)
Q Consensus       248 ~~~~~~~~~-------~~~~v~~l~~~~--~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (501)
                        .+..+..       ....+..+++-.  .+ .-+++....+|.+..|-+.....-.                      
T Consensus       140 --~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~----------------------  195 (381)
T PF02333_consen  140 --ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK----------------------  195 (381)
T ss_dssp             --EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS----------------------
T ss_pred             --cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc----------------------
Confidence              1222211       123466777643  23 3466777888988887764221000                      


Q ss_pred             eEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC--cccC
Q 010784          318 MLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG--HVGS  394 (501)
Q Consensus       318 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~--h~~~  394 (501)
                               +      +.+.++.+.. ...+..+........|..+-++. |.-|+........ ...+....+  ....
T Consensus       196 ---------v------~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~-~~~v~~~~g~~l~aD  258 (381)
T PF02333_consen  196 ---------V------SATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGND-RTLVASADGDGLVAD  258 (381)
T ss_dssp             ---------E------EEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S---EEEEEBSSSSB-S-
T ss_pred             ---------E------eeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCc-ceeeecccccccccC
Confidence                     0      0123445543 45788888888878888888887 8888876432210 122222222  3345


Q ss_pred             eEEEEec--CC---eEEEEecCCCcEEEEeCCC-ccccccc
Q 010784          395 VTQLHMD--PY---KIVTGGRDDLRINIWETDT-GMLANSL  429 (501)
Q Consensus       395 v~~l~~~--~~---~~l~~gs~dg~i~iwd~~~-~~~~~~~  429 (501)
                      |-.|++-  ++   .++++.-.+++..||+.+. ...+..|
T Consensus       259 vEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  259 VEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             ccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence            6666653  22   6777777788999999864 3444444

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.53  E-value=37  Score=32.09  Aligned_cols=20  Identities=5%  Similarity=-0.162  Sum_probs=13.9

Q ss_pred             cEEEEEEcCCCcEEEEEcCC
Q 010784          347 ILHSFSIMPSKSLICTGGIG  366 (501)
Q Consensus       347 ~v~~v~~~~~~~~l~~~~~d  366 (501)
                      ....++|+++|+++++-..+
T Consensus       185 np~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       185 NPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCccceECCCCCEEEEccCC
Confidence            34678888888887765533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.50  E-value=32  Score=32.53  Aligned_cols=53  Identities=8%  Similarity=0.024  Sum_probs=30.5

Q ss_pred             CCCceEEeeCCcEEEeecC-----------Cee-eEEEEecccc-cc--cceecccCCcceeEEEeec
Q 010784          111 KPHDHILLDNNDIFSTQGS-----------SIQ-NIKIDNFLSE-SY--YRATLSDHKARITCMRLFP  163 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~-----------~d~-~i~vw~~~~~-~~--~~~~~~~h~~~V~~~~~~~  163 (501)
                      ..+..|+++++|+++++-.           ..+ .|.+.+-..+ .+  ....+...-...+.+++.+
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~   81 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV   81 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec
Confidence            3478899999999887742           122 4555543221 12  2234433344567888877

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=84.05  E-value=23  Score=36.38  Aligned_cols=149  Identities=9%  Similarity=0.034  Sum_probs=87.9

Q ss_pred             CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc
Q 010784          223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM  302 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  302 (501)
                      ..+..|+.+|.+.++.-..+..  +.............+.++.+++   ..+..|.-||++-.+--..... ........
T Consensus       548 PTic~gtq~ssisissss~~s~--ke~~~~~~spe~~~v~~l~~ss---~Slgagl~dgt~a~y~rap~gS-wd~ep~~~  621 (925)
T KOG3522|consen  548 PTICLGTQTSSISISSSSLDSI--KEVTSEPPSPEHESVKLLLFSS---GSLGAGLIDGTLAVYGRAPSGS-WDGEPNIS  621 (925)
T ss_pred             CcccccCccceeEEeeccCCcc--cceeccCCCCchhhhhhhhccc---cccccCccCCccccccCCCCCC-CCCCCccc
Confidence            4677889999999987663221  1112222333345566666653   2455566666665543211100 00000000


Q ss_pred             -eecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc---CCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCC
Q 010784          303 -TSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI---CKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQ  377 (501)
Q Consensus       303 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~  377 (501)
                       ......+....+..+..+.++++.+.++...+.........   |...|+++....+|-+++-.+.+.+++++..+..
T Consensus       622 ~~~g~lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~  700 (925)
T KOG3522|consen  622 IPTGSLPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLW  700 (925)
T ss_pred             cccCCccccchhhhhceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccC
Confidence             11223344556667788888899999999988776665554   4567899988877877777776667777666543

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=82.97  E-value=47  Score=32.12  Aligned_cols=33  Identities=18%  Similarity=0.100  Sum_probs=24.4

Q ss_pred             ceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      .|..++..+..+.|++.+  .+|.|.+|++..++.
T Consensus       191 ~I~~v~~d~~r~~ly~l~--~~~~Iq~w~l~~~~~  223 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLT--SDGSIQVWDLGPGGS  223 (422)
T ss_dssp             -EEEEEEETTTTEEEEEE--SSE-EEEEEE-SS-E
T ss_pred             ceeeEEecCCcCEEEEEe--CCCcEEEEEEeCCCC
Confidence            388888888888999998  669999999986443

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=82.80  E-value=9.8  Score=31.33  Aligned_cols=29  Identities=10%  Similarity=0.147  Sum_probs=24.2

Q ss_pred             CeEEEEecCC-------eEEEEecCCCcEEEEeCCC
Q 010784          394 SVTQLHMDPY-------KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       394 ~v~~l~~~~~-------~~l~~gs~dg~i~iwd~~~  422 (501)
                      .|.+++|||.       -+|++.+.+|.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            6889999982       6788888999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.44  E-value=36  Score=30.40  Aligned_cols=162  Identities=8%  Similarity=-0.004  Sum_probs=100.8

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccC-CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDH-KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      ....++++.++|+.+.+.+-.....-.|+=... +++++++.-. -..--.|++..             +|++.++--.+
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyig-------------~n~fvi~dER~  149 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDLIRTIPLTGFSDPETIEYIG-------------GNQFVIVDERD  149 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEEecC-CceEEEecccccCChhHeEEec-------------CCEEEEEehhc
Confidence            344599999999988887666666555554444 4666665311 22244567766             66777777778


Q ss_pred             CceEEec--CC-cee---------eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          188 HSIRLWW--KG-SCQ---------RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       188 g~i~vwd--~~-~~~---------~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      +.+.++.  .+ ..+         ..........-.++|.    +.+..|+.+-+-.-+.|+..+......   ......
T Consensus       150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d----~~~~~l~~aKEr~P~~I~~~~~~~~~l---~~~~~~  222 (316)
T COG3204         150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWD----PVDHRLFVAKERNPIGIFEVTQSPSSL---SVHASL  222 (316)
T ss_pred             ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecC----CCCceEEEEEccCCcEEEEEecCCccc---cccccc
Confidence            8888774  11 111         1111225667789995    777788888777788888776543210   011111


Q ss_pred             CCC-------CceeEEEEeecCCeEEEEEeCCCeEEEEECCCC
Q 010784          256 GHE-------KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS  291 (501)
Q Consensus       256 ~~~-------~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~  291 (501)
                      .++       ..|.++.|.+..+.+++-+.+++.+.-.|....
T Consensus       223 ~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         223 DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            121       246677888777888888888888887776544

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=82.38  E-value=39  Score=30.84  Aligned_cols=234  Identities=9%  Similarity=-0.023  Sum_probs=108.9

Q ss_pred             CcEEEeecCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE-eeCCCceEEec----
Q 010784          121 NDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT-SSCDHSIRLWW----  194 (501)
Q Consensus       121 ~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~dg~i~vwd----  194 (501)
                      ++.+++.|.++|...+. .... ....+.  .+...|+++...+             ..+.|++ ++....+++++    
T Consensus        12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl--~~~~~v~q~~v~~-------------~~~lLi~Lsgk~~~L~~~~L~~L   75 (302)
T smart00036       12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKL--IGRRSVTQIWVLE-------------ENNVLLMISGKKPQLYSHPLSAL   75 (302)
T ss_pred             CCcEEEEEeCCceEEEE-cccCCCCeEEe--cCcCceEEEEEEh-------------hhCEEEEEeCCcceEEEEEHHHh
Confidence            33689999999988877 3321 123333  3466899999998             4454444 44444599987    


Q ss_pred             CCc----e---------eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee----ccCC
Q 010784          195 KGS----C---------QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT----LYGH  257 (501)
Q Consensus       195 ~~~----~---------~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~  257 (501)
                      ..+    .         ....-.|.....-....   ......+++++...+|.++.......  +......    ...-
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~---~~~~~~~l~~A~~~~i~l~~~~~~~~--~f~~~k~~~~~~~~~  150 (302)
T smart00036       76 VEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVV---NGKRSLFLCVALQSSVVLLQWYNPLK--KFKLFKSKFLFPLIS  150 (302)
T ss_pred             hhhhhccCCccccccccceEeCCcCCceEEEEEE---cCCCcEEEEEEcCCeEEEEEccChhh--hhhhhcccccccCCC
Confidence            210    0         00111333332222222   12223445555666777765443211  0001111    0011


Q ss_pred             CCceeEEEEeec-CCeEEEEEeCCCeEEEEECCC--CccccceecccceecCC-Cceeee-cCCCeEEEEeCCcEEEEEc
Q 010784          258 EKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTST--SSAVRSSCCVGMTSVPG-VPVDMK-CHESMLYIASGSSVVTIDL  332 (501)
Q Consensus       258 ~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~--~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~i~~~d~  332 (501)
                      ..++..+..+++ ....+..|+..+...++++..  ...... .......... .+.++. ..++..+++-.......|.
T Consensus       151 ~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~-sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~~v~Vn~  229 (302)
T smart00036      151 PVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDL-SLPFLSEETSLKPISVVQVPRDEFLLCYDEFGVFVNL  229 (302)
T ss_pred             CccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccc-cccccccccccCceEEEEECCCeEEEEECcEEEEEeC
Confidence            223333333321 234566666543345555533  111000 0000001111 233332 3344455555555555555


Q ss_pred             CCCceE--eeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCC
Q 010784          333 RTMQKV--MTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDA  379 (501)
Q Consensus       333 ~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~  379 (501)
                      ...+..  ..+ .-.....++++.  ..++++-..+.|.++++.+++..
T Consensus       230 ~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~~~~ievr~l~~~~l~  275 (302)
T smart00036      230 YGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFHDNGIEIRSIKTGELL  275 (302)
T ss_pred             CCCccccceEE-EcCCcccEEEEE--CCEEEEEcCCcEEEEECCCCceE
Confidence            431111  111 124455677775  34666666666999999987543

Unpublished observations.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=82.24  E-value=58  Score=33.85  Aligned_cols=81  Identities=12%  Similarity=0.171  Sum_probs=50.3

Q ss_pred             cCeEEEEecCC-eEEEEecCCCcEEEEeCCC----------ccc---ccccccC---CCCCCCcceeeeEeecc---ccE
Q 010784          393 GSVTQLHMDPY-KIVTGGRDDLRINIWETDT----------GML---ANSLLCN---YPEEADISTGCSAMAVS---GCR  452 (501)
Q Consensus       393 ~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~----------~~~---~~~~~~~---~~~~~~~~v~~~~~s~~---g~~  452 (501)
                      -.|..|.++|+ .+++-.+..| |.|-.+..          |+.   -+++..+   ....+...|..+.|+|.   +.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            46888999999 6666554544 55554431          111   0111100   11234567889999997   478


Q ss_pred             EEEeecCCCceEEEeeccCCccce
Q 010784          453 IVTASYGEPGLLQFRDFSNATCPV  476 (501)
Q Consensus       453 l~s~~~d~~g~i~~w~~~~~~~~~  476 (501)
                      |++=.  .|+.+|+||+.....+.
T Consensus       164 l~vLt--sdn~lR~y~~~~~~~p~  185 (717)
T PF10168_consen  164 LVVLT--SDNTLRLYDISDPQHPW  185 (717)
T ss_pred             EEEEe--cCCEEEEEecCCCCCCe
Confidence            88877  56999999998665543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=82.10  E-value=73  Score=33.70  Aligned_cols=183  Identities=12%  Similarity=0.087  Sum_probs=102.4

Q ss_pred             CCCCceEEEEee---ecCCCCCCEEEEeeCCCcEEEEec------cCCCcc---ccccceeeccC---CCCceeEEEEee
Q 010784          204 GHNGPVSTLSDK---LLGDGSGKILASGGEDATVRLWSL------SSSGKR---GQQALKATLYG---HEKPIKLMSVAG  268 (501)
Q Consensus       204 ~h~~~v~~l~~s---~~~~~~~~~l~sg~~dg~i~iwd~------~~~~~~---~~~~~~~~~~~---~~~~v~~l~~~~  268 (501)
                      .-..+|..|+|.   ...+....+|++= ....+.|+..      ......   -...++..+..   ...+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            356788888885   1112223455543 4456677762      111110   01112233321   234667899999


Q ss_pred             cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784          269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL  348 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v  348 (501)
                      .+...||.....|...||++..........           +.+.....       +.| ++|.+          ..+.-
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~-----------~~~~~~~~-------gsi-~~d~~----------e~s~w  206 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSN-----------LRLSRNIS-------GSI-IFDPE----------ELSNW  206 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcc-----------eeeccCCC-------ccc-cCCCc----------ccCcc
Confidence            888899999999999999993222111000           00000000       011 11111          11445


Q ss_pred             EEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEEEEeCCC
Q 010784          349 HSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       349 ~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~~  422 (501)
                      ..+.|.++...|+.++...+.++|+.+....   ..+. .......|..+.-+|.   .+++-  ....|...++..
T Consensus       207 ~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~---~~l~-~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~  277 (765)
T PF10214_consen  207 KRILWVSDSNRLLVCNRSKLMLIDFESNWQT---EYLV-TAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS  277 (765)
T ss_pred             eeeEecCCCCEEEEEcCCceEEEECCCCCcc---chhc-cCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence            6788988888888888888999999987542   1111 2234567888888776   33333  235688888876

These proteins are found in fungi.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=82.07  E-value=33  Score=34.79  Aligned_cols=180  Identities=14%  Similarity=0.080  Sum_probs=90.1

Q ss_pred             cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784          154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA  232 (501)
Q Consensus       154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg  232 (501)
                      .-++++.-+|             .+..++++..||.|++|+ ..+....+-....+-..+.|.      +.-|++...|.
T Consensus        15 e~~~aiqshp-------------~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~t------nhgl~~~tsdr   75 (1636)
T KOG3616|consen   15 EFTTAIQSHP-------------GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFT------NHGLVTATSDR   75 (1636)
T ss_pred             ceeeeeeecC-------------CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeee------ccceEEEeccc
Confidence            4466777667             789999999999999998 322222222222333445552      22356666777


Q ss_pred             cEEEEeccCCCccccccceeeccC-CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee
Q 010784          233 TVRLWSLSSSGKRGQQALKATLYG-HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD  311 (501)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  311 (501)
                      .+.-|.-+.--+     ....+.. ......++...|...+  +.|.--|-|.-+|.--...+..               
T Consensus        76 r~la~~~dgvvq-----qqfdyndqsekefss~~cdptaqn--vvgtlcggv~q~dcclrr~i~k---------------  133 (1636)
T KOG3616|consen   76 RALAWKEDGVVQ-----QQFDYNDQSEKEFSSILCDPTAQN--VVGTLCGGVEQFDCCLRRGILK---------------  133 (1636)
T ss_pred             hhheeeccCcch-----hhccccchhhhhccceecCchhhh--hhhhhccceeeehHHHHhHHHh---------------
Confidence            787886543211     0111111 1223344444443222  2344445555555321111000               


Q ss_pred             eecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCC
Q 010784          312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQ  377 (501)
Q Consensus       312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~  377 (501)
                         +.-.+..+.-+.+.+-|+.++..........-.|..+.+....++++.-....|.+=|+.+.+
T Consensus       134 ---nkfe~tyv~pshvilkdlsn~trt~l~s~~g~aidelkilgkdryli~~ts~siii~d~es~r  196 (1636)
T KOG3616|consen  134 ---NKFELTYVAPSHVILKDLSNDTRTNLISHKGLAIDELKILGKDRYLIAHTSESIIIADLESNR  196 (1636)
T ss_pred             ---ccceeEEeccceeeeecccCCceEeeeecCCcchhhhhhccccceEEeeccccEEEeecccch
Confidence               000111222335566666666554443322334455555555666666666667777877654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.68  E-value=38  Score=30.22  Aligned_cols=205  Identities=11%  Similarity=0.080  Sum_probs=113.9

Q ss_pred             ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC-CCceeEEEEeecCCeEEEEEeCC
Q 010784          202 FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-EKPIKLMSVAGHKSFLLVTISKD  280 (501)
Q Consensus       202 ~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~s~d  280 (501)
                      +.+-...+.++.|+    |+.+.|++......-.|+=-..++      ++.++.-. -..-..|.+.. ++.+.++--.+
T Consensus        81 i~g~~~nvS~LTyn----p~~rtLFav~n~p~~iVElt~~Gd------lirtiPL~g~~DpE~Ieyig-~n~fvi~dER~  149 (316)
T COG3204          81 ILGETANVSSLTYN----PDTRTLFAVTNKPAAIVELTKEGD------LIRTIPLTGFSDPETIEYIG-GNQFVIVDERD  149 (316)
T ss_pred             cccccccccceeeC----CCcceEEEecCCCceEEEEecCCc------eEEEecccccCChhHeEEec-CCEEEEEehhc
Confidence            34556669999996    777888877766666666444444      34443211 12224566763 56666666678


Q ss_pred             CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc-eEeeeccCCCcEEEEEEcCCCcE
Q 010784          281 SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ-KVMTPAICKPILHSFSIMPSKSL  359 (501)
Q Consensus       281 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~v~~~~~~~~  359 (501)
                      +.+.++.+.........                                   .+.+ .+......+.....++|.|.++.
T Consensus       150 ~~l~~~~vd~~t~~~~~-----------------------------------~~~~i~L~~~~k~N~GfEGlA~d~~~~~  194 (316)
T COG3204         150 RALYLFTVDADTTVISA-----------------------------------KVQKIPLGTTNKKNKGFEGLAWDPVDHR  194 (316)
T ss_pred             ceEEEEEEcCCccEEec-----------------------------------cceEEeccccCCCCcCceeeecCCCCce
Confidence            88888877654321110                                   0000 00111112556788999999888


Q ss_pred             EEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-------ccCeEEEEecCC--eEEEEecCCCcEEEEeCCCccccccc
Q 010784          360 ICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-------VGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSL  429 (501)
Q Consensus       360 l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~  429 (501)
                      |..+-+.. +.||........   -.+.....+       -..|.++.+++.  .+++-+..++.+.-.|.. |..+..+
T Consensus       195 l~~aKEr~P~~I~~~~~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l  270 (316)
T COG3204         195 LFVAKERNPIGIFEVTQSPSS---LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL  270 (316)
T ss_pred             EEEEEccCCcEEEEEecCCcc---cccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence            88888777 888877644311   001111111       234677888865  666666688888777764 4444443


Q ss_pred             ccCCC-CCCC---cceeeeEeeccccEEEEe
Q 010784          430 LCNYP-EEAD---ISTGCSAMAVSGCRIVTA  456 (501)
Q Consensus       430 ~~~~~-~~~~---~~v~~~~~s~~g~~l~s~  456 (501)
                      ..... .+-.   -.-.+++...+|..-+++
T Consensus       271 sL~~g~~gL~~dipqaEGiamDd~g~lYIvS  301 (316)
T COG3204         271 SLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS  301 (316)
T ss_pred             EeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence            22110 0111   123456777777655444

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.42  E-value=5.1  Score=23.03  Aligned_cols=29  Identities=21%  Similarity=0.161  Sum_probs=19.4

Q ss_pred             CcceeeeEeeccccEEEEeecCCC--ceEEEe
Q 010784          438 DISTGCSAMAVSGCRIVTASYGEP--GLLQFR  467 (501)
Q Consensus       438 ~~~v~~~~~s~~g~~l~s~~~d~~--g~i~~w  467 (501)
                      ........|||||+.|+-++. .+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~-~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSN-RNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEE-CT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEec-CCCCCCcCEE
Confidence            345677899999999988774 34  555444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=80.89  E-value=68  Score=32.60  Aligned_cols=170  Identities=9%  Similarity=0.021  Sum_probs=92.7

Q ss_pred             CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC--Ccee--eecc-CCCCceEEEEeeecCC--CCCCEE
Q 010784          153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK--GSCQ--RCFK-GHNGPVSTLSDKLLGD--GSGKIL  225 (501)
Q Consensus       153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~--~~~~--~~~~-~h~~~v~~l~~s~~~~--~~~~~l  225 (501)
                      .+.|-.+.|.+             ++..+++...+|.|.+||.  +...  ..+. .+...+.--.|.....  ....++
T Consensus       129 ~~kvv~Ik~~~-------------~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~l  195 (670)
T PF10395_consen  129 DDKVVGIKFSS-------------DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLL  195 (670)
T ss_pred             ccceEEEEEec-------------CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceE
Confidence            56788888886             7899999999999999983  1111  1121 1222221112221111  123444


Q ss_pred             EEeeC-C---CcEEEEeccCCCccccccceeecc---CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784          226 ASGGE-D---ATVRLWSLSSSGKRGQQALKATLY---GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC  298 (501)
Q Consensus       226 ~sg~~-d---g~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  298 (501)
                      ++-+. +   -..+++.+.....     .+..+.   .+........|....|.+.--  .+++|.+|++...+......
T Consensus       196 l~v~~~~~~k~~ykL~~l~~~~~-----~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~  268 (670)
T PF10395_consen  196 LTVSQLSNSKLSYKLISLSNESS-----SIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTIS  268 (670)
T ss_pred             EEEEEcCCCcEEEEEEEeccCCc-----ceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEE
Confidence            44443 2   2467777722111     122221   122222333444445554433  67899999998876655544


Q ss_pred             cccceecC-CCceee-ecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784          299 CVGMTSVP-GVPVDM-KCHESMLYIASGSSVVTIDLRTMQKVMTPA  342 (501)
Q Consensus       299 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  342 (501)
                      ........ ...+++ ..+++.++++.++.|++.|+.-...+..+.
T Consensus       269 l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  269 LPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             echhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence            33233222 334444 567788888889999999987665554443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=80.55  E-value=44  Score=30.22  Aligned_cols=198  Identities=11%  Similarity=0.079  Sum_probs=91.1

Q ss_pred             cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC-----eEEEEEeCCCeEEEEECCCCccccceecccceecCC
Q 010784          233 TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS-----FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG  307 (501)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-----~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  307 (501)
                      .|.+||+.+++......+........+.+..+.+...++     ...++=+..+.|.|+|+.+++.-+....        
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~--------  106 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN--------  106 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC--------
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC--------
Confidence            456666666552111111111111345677788775332     2344444556899999999864322111        


Q ss_pred             CceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC---CCcEEEEEcCCcEEEEecCCCCCCCCC--
Q 010784          308 VPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP---SKSLICTGGIGKAMTWDIRRSQDAVKP--  382 (501)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~---~~~~l~~~~~d~i~iwd~~~~~~~~~~--  382 (501)
                         .+...+....+..++..             +. ....+..++.+|   +++.|.-..-.+-++|.+.+.-.....  
T Consensus       107 ---~~~~~p~~~~~~i~g~~-------------~~-~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~  169 (287)
T PF03022_consen  107 ---SFSPDPDAGPFTIGGES-------------FQ-WPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLS  169 (287)
T ss_dssp             ---GCTTS-SSEEEEETTEE-------------EE-ETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--
T ss_pred             ---CcceeccccceeccCce-------------Ee-cCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCcccc
Confidence               11122221112222211             11 123377888876   667777666444445544331110000  


Q ss_pred             ------CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc---cccccccCCCCCCCcceeeeEeec--cc
Q 010784          383 ------QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM---LANSLLCNYPEEADISTGCSAMAV--SG  450 (501)
Q Consensus       383 ------~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~--~g  450 (501)
                            ..+..+.........++++++ .++.+--..+.|..|+....-   ....+..  ....-....++.+.+  +|
T Consensus       170 ~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~--d~~~l~~pd~~~i~~~~~g  247 (287)
T PF03022_consen  170 DAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ--DPRTLQWPDGLKIDPEGDG  247 (287)
T ss_dssp             HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE---CC-GSSEEEEEE-T--TS
T ss_pred             ccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE--cCceeeccceeeeccccCc
Confidence                  001111111134566788888 777777788999999987521   1222210  011134567777877  66


Q ss_pred             cEEEEee
Q 010784          451 CRIVTAS  457 (501)
Q Consensus       451 ~~l~s~~  457 (501)
                      .+.+...
T Consensus       248 ~L~v~sn  254 (287)
T PF03022_consen  248 YLWVLSN  254 (287)
T ss_dssp             -EEEEE-
T ss_pred             eEEEEEC
Confidence            5555543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=80.13  E-value=45  Score=30.00  Aligned_cols=94  Identities=15%  Similarity=0.131  Sum_probs=60.5

Q ss_pred             cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc------CCc-EEEEecCCCCCCCCCCCcccccC-----ccc
Q 010784          326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG------IGK-AMTWDIRRSQDAVKPQPMAELDG-----HVG  393 (501)
Q Consensus       326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~------~d~-i~iwd~~~~~~~~~~~~~~~~~~-----h~~  393 (501)
                      .+.+||..+.+-...-.+-.+.|+++.|..+.+++++|.      ... +..||..+..-       ..+.+     -.+
T Consensus        17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-------~~~~~~~s~~ipg   89 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-------SSLGGGSSNSIPG   89 (281)
T ss_pred             EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-------eecCCcccccCCC
Confidence            688999887766555555678899999997788888776      233 88899887542       22222     236


Q ss_pred             CeEEEEecC---CeEEEEec-CCC--cEEEEeCCCcccc
Q 010784          394 SVTQLHMDP---YKIVTGGR-DDL--RINIWETDTGMLA  426 (501)
Q Consensus       394 ~v~~l~~~~---~~~l~~gs-~dg--~i~iwd~~~~~~~  426 (501)
                      +|+.+.+..   +.+.++|. .+|  .|..||=.+...+
T Consensus        90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i  128 (281)
T PF12768_consen   90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI  128 (281)
T ss_pred             cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence            788887733   26665553 344  3666665444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	501
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-04
2h9l_A	329	Wdr5delta23 Length = 329		2e-05
2h9l_A	329	Wdr5delta23 Length = 329		2e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		5e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		6e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		6e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		7e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		2e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		5e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		5e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		5e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		5e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		6e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		8e-04

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 26/153 (16%)
Query: 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFK 203
           +  LS H++ +T +   P+              +V+V++S D +I++W    G  +R  K
Sbjct: 101 KYALSGHRSPVTRVIFHPVF-------------SVMVSASEDATIKVWDYETGDFERTLK 147
Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263
           GH   V  +S     D SGK+LAS   D T++LW       +G + ++ T++GH+  +  
Sbjct: 148 GHTDSVQDIS----FDHSGKLLASCSADMTIKLWDF-----QGFECIR-TMHGHDHNVSS 197
Query: 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           +S+  +    +V+ S+D  +++W+  T   V++
Sbjct: 198 VSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKT 229

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 113/279 (40%), Gaps = 39/279 (13%)
Query: 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVS 210
           K  + C R+   H  S+     Q  E V++T S D ++R+W    G        H   V 
Sbjct: 160 KNTLECKRILTGHTGSVL--CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL 217
Query: 211 TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270
            L      +G   ++ +  +D ++ +W ++S        L+  L GH   +   +V    
Sbjct: 218 HLR---FNNG---MMVTCSKDRSIAVWDMASPT---DITLRRVLVGHRAAV---NVVDFD 265
Query: 271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIASGSSVVT 329
              +V+ S D  ++VW+TST   VR        ++ G    + C +     + SGSS  T
Sbjct: 266 DKYIVSASGDRTIKVWNTSTCEFVR--------TLNGHKRGIACLQYRDRLVVSGSSDNT 317
Query: 330 IDLRTMQKVMTPAICKPILHSFSIM------PSKSLICTGGIGKAMTWDIRRSQDAVKPQ 383
           I L  ++       C  +L     +       +K ++     GK   WD+  + D   P 
Sbjct: 318 IRLWDIE----CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 373
Query: 384 P---MAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWE 419
               +  L  H G V +L  D ++IV+   DD  I IW+
Sbjct: 374 GTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT-ILIWD 411

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 36/279 (12%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C+R    H   ++ S  Q  +N++++ S D ++++W    G C     GH   V  +   
Sbjct: 151 CLRTLVGHTGGVWSS--QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 208
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
                  K + SG  DAT+R+W + +      Q L   L GH   ++ +   G +   +V
Sbjct: 209 ------EKRVVSGSRDATLRVWDIETG-----QCLHV-LMGHVAAVRCVQYDGRR---VV 253
Query: 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTS-VPGVPVDMKCHESMLYIASGS---SVVTID 331
           + + D  V+VWD  T + + +    G T+ V  +  D       +++ SGS   S+   D
Sbjct: 254 SGAYDFMVKVWDPETETCLHT--LQGHTNRVYSLQFD------GIHVVSGSLDTSIRVWD 305
Query: 332 LRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH 391
           + T   + T    + +      +    L+          WDI+  Q     Q +   + H
Sbjct: 306 VETGNCIHTLTGHQSLTSGME-LKDNILVSGNADSTVKIWDIKTGQCL---QTLQGPNKH 361
Query: 392 VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL 430
             +VT L  +   ++T   DD  + +W+  TG    +L+
Sbjct: 362 QSAVTCLQFNKNFVITSS-DDGTVKLWDLKTGEFIRNLV 399

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 34/184 (18%)
Query: 118 LDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD----HKARITCMRLFPLHETSLFRSE 173
           LDN  I S   S  + IK+ N L E  Y  T+S+    H+  ++C+R             
Sbjct: 482 LDNRQIVSA--SRDRTIKLWNTLGECKY--TISEGGEGHRDWVSCVRF-----------S 526
Query: 174 PQRTENVLVTSSCDHSIRLWWKGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGED 231
           P   +  +V++S D ++++W   +C+      GH G VST++  +  DGS  + ASGG+D
Sbjct: 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVA--VSPDGS--LCASGGKD 582
Query: 232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS 291
             V LW L+   K         LY  E    + ++    +   +  + +  +++WD  + 
Sbjct: 583 GVVLLWDLAEGKK---------LYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESK 633
Query: 292 SAVR 295
           S V 
Sbjct: 634 SIVE 637

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 162
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 163 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 216 A-TLDNTLKLWDYSKGKCLKT 235

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
           N+LV++S D ++++W    G C +  KGH+  V   +     +    ++ SG  D +VR+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 139
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           W + +      + LK TL  H  P+  +      S L+V+ S D   R+WDT++   +++
Sbjct: 140 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 192
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
                +      PV  +K   +  YI + +   T+          L+T         C  
Sbjct: 193 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 245
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
           I  +FS+   K ++          W+++        + + +L GH   V      P + +
Sbjct: 246 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 299
Query: 407 TGG---RDDLRINIWETD 421
                  +D  I +W++D
Sbjct: 300 IASAALENDKTIKLWKSD 317

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 99  CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 156
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 157 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 209
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 210 A-TLDNTLKLWDYSKGKCLKT 229

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
           N+LV++S D ++++W    G C +  KGH+  V   +     +    ++ SG  D +VR+
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 133
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           W + +      + LK TL  H  P+  +      S L+V+ S D   R+WDT++   +++
Sbjct: 134 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 186
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
                +      PV  +K   +  YI + +   T+          L+T         C  
Sbjct: 187 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 239
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
           I  +FS+   K ++          W+++        + + +L GH   V      P + +
Sbjct: 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 293
Query: 407 TGG---RDDLRINIWETD 421
                  +D  I +W++D
Sbjct: 294 IASAALENDKTIKLWKSD 311

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 99  CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 156
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 157 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 209
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 210 A-TLDNTLKLWDYSKGKCLKT 229

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
           N+LV++S D ++++W    G C +  KGH+  V   +     +    ++ SG  D +VR+
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 133
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           W + +      + LK TL  H  P+  +      S L+V+ S D   R+WDT++   +++
Sbjct: 134 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 186
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
                +      PV  +K   +  YI + +   T+          L+T         C  
Sbjct: 187 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 239
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
           I  +FS+   K ++          W+++        + + +L GH   V      P + +
Sbjct: 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 293
Query: 407 TGG---RDDLRINIWETD 421
                  +D  I +W++D
Sbjct: 294 IASAALENDKTIKLWKSD 311

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 98  CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 155
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 156 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 208
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 209 A-TLDNTLKLWDYSKGKCLKT 228

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
           N+LV++S D ++++W    G C +  KGH+  V   +     +    ++ SG  D +VR+
Sbjct: 77  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 132
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           W + +      + LK TL  H  P+  +      S L+V+ S D   R+WDT++   +++
Sbjct: 133 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 185
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
                +      PV  +K   +  YI + +   T+          L+T         C  
Sbjct: 186 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 238
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
           I  +FS+   K ++          W+++        + + +L GH   V      P + +
Sbjct: 239 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 292
Query: 407 TGG---RDDLRINIWETD 421
                  +D  I +W++D
Sbjct: 293 IASAALENDKTIKLWKSD 310

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 162
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 163 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 216 A-TLDNTLKLWDYSKGKCLKT 235

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
           N+LV++S D ++++W    G C +  KGH+  V   +     +    ++ SG  D +VR+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 139
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           W + +      + LK TL  H  P+  +      S L+V+ S D   R+WDT++   +++
Sbjct: 140 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 192
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
                +      PV  +K   +  YI + +   T+          L+T         C  
Sbjct: 193 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 245
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
           I  +FS+   K ++          W+++        + + +L GH   V      P + +
Sbjct: 246 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 299
Query: 407 TGG---RDDLRINIWETD 421
                  +D  I +W++D
Sbjct: 300 IASAALENDKTIKLWKSD 317

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 95  CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 152
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 153 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 205
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 206 A-TLDNTLKLWDYSKGKCLKT 225

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
           N+LV++S D ++++W    G C +  KGH+  V   +     +    ++ SG  D +VR+
Sbjct: 74  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 129
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           W + +      + LK TL  H  P+  +      S L+V+ S D   R+WDT++   +++
Sbjct: 130 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 182
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
                +      PV  +K   +  YI + +   T+          L+T         C  
Sbjct: 183 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 235
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
           I  +FS+   K ++          W+++        + + +L GH   V      P + +
Sbjct: 236 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 289
Query: 407 TGG---RDDLRINIWETD 421
                  +D  I +W++D
Sbjct: 290 IASAALENDKTIKLWKSD 307

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 116 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 173
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 174 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 226
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 227 A-TLDNTLKLWDYSKGKCLKT 246

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
           N+LV++S D ++++W    G C +  KGH+  V   +     +    ++ SG  D +VR+
Sbjct: 95  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 150
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           W + +      + LK TL  H  P+  +      S L+V+ S D   R+WDT++   +++
Sbjct: 151 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 203
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
                +      PV  +K   +  YI + +   T+          L+T         C  
Sbjct: 204 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 256
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
           I  +FS+   K ++          W+++        + + +L GH   V      P + +
Sbjct: 257 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 310
Query: 407 TGG---RDDLRINIWETD 421
                  +D  I +W++D
Sbjct: 311 IASAALENDKTIKLWKSD 328

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 100 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 157
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 158 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 210
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 211 A-TLDNTLKLWDYSKGKCLKT 230

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
           N+LV++S D ++++W    G C +  KGH+  V   +     +    ++ SG  D +VR+
Sbjct: 79  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 134
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           W + +      + LK TL  H  P+  +      S L+V+ S D   R+WDT++   +++
Sbjct: 135 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 187
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
                +      PV  +K   +  YI + +   T+          L+T         C  
Sbjct: 188 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 240
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
           I  +FS+   K ++          W+++        + + +L GH   V      P + +
Sbjct: 241 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 294
Query: 407 TGG---RDDLRINIWETD 421
                  +D  I +W++D
Sbjct: 295 IASAALENDKTIKLWKSD 312

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 178
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 179 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 231
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 232 A-TLDNTLKLWDYSKGKCLKT 251

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
           N+LV++S D ++++W    G C +  KGH+  V   +     +    ++ SG  D +VR+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 155
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           W + +      + LK TL  H  P+  +      S L+V+ S D   R+WDT++   +++
Sbjct: 156 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 208
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
                +      PV  +K   +  YI + +   T+          L+T         C  
Sbjct: 209 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 261
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
           I  +FS+   K ++          W+++  +   K      L GH   V      P + +
Sbjct: 262 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHTDVVISTACHPTENI 315
Query: 407 TGG---RDDLRINIWETD 421
                  +D  I +W++D
Sbjct: 316 IASAALENDKTIKLWKSD 333

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 159
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 160 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 213 A-TLDNTLKLWDYSKGKCLKT 232

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 104 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 161
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 162 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 214
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 215 A-TLDNTLKLWDYSKGKCLKT 234

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 159
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 160 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 213 A-TLDNTLKLWDYSKGKCLKT 232

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--H 180
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              DGS  ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 181 FNRDGS--LIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 233
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 234 A-TLDNTLKLWDYSKGKCLKT 253

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
           N+LV++S D ++++W    G C +  KGH+  V   +     +    ++ SG  D +VR+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 157
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           W + +      + LK TL  H  P+  +      S L+V+ S D   R+WDT++   +++
Sbjct: 158 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 210
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
                +      PV  +K   +  YI + +   T+          L+T         C  
Sbjct: 211 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 263
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
           I  +FS+   K ++          W+++  +   K      L GH   V      P + +
Sbjct: 264 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHTDVVISTACHPTENI 317
Query: 407 TGG---RDDLRINIWETD 421
                  +D  I +W++D
Sbjct: 318 IASAALENDKTIKLWKSD 335

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 162
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 163 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 216 A-TLDNTLKLWDYSKGKCLKT 235

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 159
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 160 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 213 A-TLDNTLKLWDYSKGKCLKT 232

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
           N+LV++S D ++++W    G C +  KGH+  V   +     +    ++ SG  D +VR+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 136
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           W + +      + LK TL  H  P+  +      S L+V+ S D   R+WDT++   +++
Sbjct: 137 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 189
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
                +      PV  +K   +  YI + +   T+          L+T         C  
Sbjct: 190 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 242
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
           I  +FS+   K ++          W+++        + + +L GH   V      P + +
Sbjct: 243 IFANFSVTGGKWIVSGSEDNLVYIWNLQT------KEIVQKLQGHTDVVISTACHPTENI 296
Query: 407 TGG---RDDLRINIWETD 421
                  +D  I +W++D
Sbjct: 297 IASAALENDKTIKLWKSD 314

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVH-- 159
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 160 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 213 A-TLDNDLKLWDYSKGKCLKT 232

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
           C++    H   +F        N++V+ S D S+R+W    G C +    H+ PVS +   
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVH-- 159
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
              +  G ++ S   D   R+W  +S      Q LK  +     P+  +  + +  ++L 
Sbjct: 160 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
             + D+ +++WD S    +++
Sbjct: 213 A-TLDNTLKLWDYSKGKCLKT 232

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
           N+LV++S D ++++W    G C +  KGH+  V   +     +    ++ SG  D +VR+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 136
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           W +     +    LK TL  H  P+  +      S L+V+ S D   R+WDT++   +++
Sbjct: 137 WDV-----KTGMCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 189
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
                +      PV  +K   +  YI + +   T+          L+T         C  
Sbjct: 190 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 242
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
           I  +FS+   K ++          W+++        + + +L GH   V      P + +
Sbjct: 243 IFANFSVTGGKWIVSGSEDNMVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 296
Query: 407 TGG---RDDLRINIWETD 421
                  +D  I +W++D
Sbjct: 297 IASAALENDKTIKLWKSD 314

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 26/205 (12%)
Query: 104 VCFYSV-AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLF 162
           +C + + A P +H ++D  +IF+   + ++++   + L ES + +   D K  I   R  
Sbjct: 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQKLMIWDTRNN 264
Query: 163 ----PLHETSLFRSEPQ------RTENVLVTSSCDHSIRLWWKGSCQ---RCFKGHNGPV 209
               P H      +E         +E +L T S D ++ LW   + +     F+ H   +
Sbjct: 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 324
Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR--------GQQALKATLYGHEKPI 261
             +        +  ILAS G D  + +W LS  G+         G   L     GH   I
Sbjct: 325 FQVQ---WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 262 KLMSVAGHKSFLLVTISKDSKVRVW 286
              S   ++ +++ ++S+D+ ++VW
Sbjct: 382 SDFSWNPNEPWIICSVSEDNIMQVW 406

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 26/205 (12%)
Query: 104 VCFYSV-AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLF 162
           +C + + A P +H ++D  +IF+   + ++++   + L ES + +   D K  I   R  
Sbjct: 208 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQKLMIWDTRNN 266
Query: 163 ----PLHETSLFRSEPQ------RTENVLVTSSCDHSIRLWWKGSCQ---RCFKGHNGPV 209
               P H      +E         +E +L T S D ++ LW   + +     F+ H   +
Sbjct: 267 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 326
Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR--------GQQALKATLYGHEKPI 261
             +        +  ILAS G D  + +W LS  G+         G   L     GH   I
Sbjct: 327 FQVQ---WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 262 KLMSVAGHKSFLLVTISKDSKVRVW 286
              S   ++ +++ ++S+D+ ++VW
Sbjct: 384 SDFSWNPNEPWIICSVSEDNIMQVW 408

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 26/205 (12%)
Query: 104 VCFYSV-AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLF 162
           +C + + A P +H ++D  +IF+   + ++++   + L ES + +   D K  I   R  
Sbjct: 210 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQKLMIWDTRNN 268
Query: 163 ----PLHETSLFRSEPQ------RTENVLVTSSCDHSIRLWWKGSCQ---RCFKGHNGPV 209
               P H      +E         +E +L T S D ++ LW   + +     F+ H   +
Sbjct: 269 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 328
Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR--------GQQALKATLYGHEKPI 261
             +        +  ILAS G D  + +W LS  G+         G   L     GH   I
Sbjct: 329 FQVQ---WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 262 KLMSVAGHKSFLLVTISKDSKVRVW 286
              S   ++ +++ ++S+D+ ++VW
Sbjct: 386 SDFSWNPNEPWIICSVSEDNIMQVW 410

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV--AGHKSFLLVTISK 279
           GK LA+G ED  +R+W + +      + +   L GHE+ I  +    +G K   LV+ S 
Sbjct: 135 GKFLATGAEDRLIRIWDIEN------RKIVMILQGHEQDIYSLDYFPSGDK---LVSGSG 185
Query: 280 DSKVRVWDTSTSS-AVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS 325
           D  VR+WD  T   ++  S   G+T+V   P D K      YIA+GS
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK------YIAAGS 226

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 107/265 (40%), Gaps = 57/265 (21%)
Query: 43  MAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFKFVDPL 102
             +S K+F ++ + D +      + W ++          +R++    +  L+   FV P 
Sbjct: 20  FEISLKIFNYLQFEDIINSLGVSQNWNKI----------IRKSTSLWKKLLISENFVSPK 69
Query: 103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYY-------RATLSDHKAR 155
                ++     +  L   D    + S ++NI    F+ +++Y       R TL  H   
Sbjct: 70  GFNSLNLKLSQKYPKLSQQD--RLRLSFLENI----FILKNWYNPKFVPQRTTLRGHXTS 123
Query: 156 -ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCF----KGHNGPVS 210
            ITC+               Q  +N ++T + D  IR++   S  + F     GH+G V 
Sbjct: 124 VITCL---------------QFEDNYVITGADDKXIRVY--DSINKKFLLQLSGHDGGVW 166
Query: 211 TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270
            L         G IL SG  D TVR+W +    K+G         GH   ++ + +  +K
Sbjct: 167 ALKY-----AHGGILVSGSTDRTVRVWDI----KKG--CCTHVFEGHNSTVRCLDIVEYK 215
Query: 271 SF-LLVTISKDSKVRVWDTSTSSAV 294
           +   +VT S+D+ + VW     S+V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSV 240

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 57/265 (21%)
Query: 43  MAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFKFVDPL 102
             +S K+F ++ + D +      + W ++          +R++    +  L+   FV P 
Sbjct: 20  FEISLKIFNYLQFEDIINSLGVSQNWNKI----------IRKSTSLWKKLLISENFVSPK 69
Query: 103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYY-------RATLSDH-KA 154
                ++     +  L   D    + S ++NI    F+ +++Y       R TL  H  +
Sbjct: 70  GFNSLNLKLSQKYPKLSQQD--RLRLSFLENI----FILKNWYNPKFVPQRTTLRGHMTS 123
Query: 155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCF----KGHNGPVS 210
            ITC+               Q  +N ++T + D  IR++   S  + F     GH+G V 
Sbjct: 124 VITCL---------------QFEDNYVITGADDKMIRVY--DSINKKFLLQLSGHDGGVW 166
Query: 211 TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270
            L         G IL SG  D TVR+W +    K+G         GH   ++ + +  +K
Sbjct: 167 ALKY-----AHGGILVSGSTDRTVRVWDI----KKG--CCTHVFEGHNSTVRCLDIVEYK 215
Query: 271 SF-LLVTISKDSKVRVWDTSTSSAV 294
           +   +VT S+D+ + VW     S+V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSV 240

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 26/189 (13%)
Query: 201 CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP 260
           C   H+  VST+S  +L  G+  +  SG +D  +++W L+      QQ + ++   H   
Sbjct: 122 CKYEHDDIVSTVS--VLSSGTQAV--SGSKDICIKVWDLA------QQVVLSSYRAHAAQ 171
Query: 261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG-VPVDMKCH---- 315
           +  ++ + HK  + ++ S+D+++ +WDT          C    S PG +P  +  H    
Sbjct: 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC----SAPGYLPTSLAWHPQQS 227
Query: 316 ESMLYIASGSSVVTIDLRTMQKVMTPAI---CKPIL----HSFSIMPSKSLICTGGIGKA 368
           E  ++     +V  +D ++   V++ A+   C   L    HS   + S S  C+  +  +
Sbjct: 228 EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDS 287
Query: 369 MTWDIRRSQ 377
              ++ RSQ
Sbjct: 288 SLSELFRSQ 296

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPV 209
           H A + C+ L            P  T N  V+  CD    +W    G C + F+ H   V
Sbjct: 195 HGADVLCLDL-----------APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDV 243
Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH 269
           +++     GD      ASG +DAT RL+ L +  +    + ++ ++G        S++G 
Sbjct: 244 NSVRYYPSGDA----FASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD--FSLSGR 297
Query: 270 KSFLLVTISKDSKVRVWDTSTSSAV 294
              LL     D  + VWD    S V
Sbjct: 298 ---LLFAGYNDYTINVWDVLKGSRV 319

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 106/273 (38%), Gaps = 67/273 (24%)
Query: 132 QNIKIDNFLSESY-YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190
           +N+   + ++E    R TL  H   +T +   P            +  ++++++S D +I
Sbjct: 16  ENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTP------------QFPDMILSASRDKTI 63
Query: 191 RLWW-------KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG 243
            +W         G  QR  +GH+  VS     ++    G+   SG  D T+RLW L++  
Sbjct: 64  IMWKLTRDETNYGIPQRALRGHSHFVS----DVVISSDGQFALSGSWDGTLRLWDLTTG- 118
Query: 244 KRGQQALKATLYGHEKPIKLMSVA-GHKSFLLVTISKDSKVRVWDT--------STSSAV 294
                       GH K +  +SVA    +  +V+ S+D  +++W+T           S  
Sbjct: 119 -----TTTRRFVGHTKDV--LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 171
Query: 295 RSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK--------- 345
               CV  +     P+ + C    L                 KV   A CK         
Sbjct: 172 EWVSCVRFSPNSSNPIIVSCGWDKLV----------------KVWNLANCKLKTNHIGHT 215
Query: 346 PILHSFSIMPSKSLICTGGI-GKAMTWDIRRSQ 377
             L++ ++ P  SL  +GG  G+AM WD+   +
Sbjct: 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 180 VLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
           + V+ +CD S +LW   +G C++ F GH   ++ +        +G   A+G +DAT RL+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAFATGSDDATCRLF 253
Query: 238 SLSSSGKRGQQALKATLYGHEKPI-KLMSVAGHKS-FLLVTISKDSKVRVWD 287
            L     R  Q L    Y H+  I  + SV+  KS  LL+    D    VWD
Sbjct: 254 DL-----RADQELMT--YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 180 VLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
           + V+ +CD S +LW   +G C++ F GH   ++ +        +G   A+G +DAT RL+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAFATGSDDATCRLF 253
Query: 238 SLSSSGKRGQQALKATLYGHEKPI-KLMSVAGHKS-FLLVTISKDSKVRVWD 287
            L     R  Q L    Y H+  I  + SV+  KS  LL+    D    VWD
Sbjct: 254 DL-----RADQELMT--YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 180 VLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
           + V+ +CD S +LW   +G C++ F GH   ++ +        +G   A+G +DAT RL+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAFATGSDDATCRLF 253
Query: 238 SLSSSGKRGQQALKATLYGHEKPI-KLMSVAGHKS-FLLVTISKDSKVRVWD 287
            L     R  Q L    Y H+  I  + SV+  KS  LL+    D    VWD
Sbjct: 254 DL-----RADQELMT--YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 180 VLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
           + V+ +CD S +LW   +G C++ F GH   ++ +        +G   A+G +DAT RL+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAFATGSDDATCRLF 253
Query: 238 SLSSSGKRGQQALKATLYGHEKPI-KLMSVAGHKS-FLLVTISKDSKVRVWD 287
            L     R  Q L    Y H+  I  + SV+  KS  LL+    D    VWD
Sbjct: 254 DL-----RADQELMT--YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 180 VLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
           + V+ +CD S +LW   +G C++ F GH   ++ +        +G   A+G +DAT RL+
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAFATGSDDATCRLF 264
Query: 238 SLSSSGKRGQQALKATLYGHEKPI-KLMSVAGHKS-FLLVTISKDSKVRVWD 287
            L     R  Q L    Y H+  I  + SV+  KS  LL+    D    VWD
Sbjct: 265 DL-----RADQELMT--YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 309

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263
           GH+GP+S L      + + K+L S  +D T+R+W     G  G    +   YGH + I  
Sbjct: 245 GHHGPISVLE----FNDTNKLLLSASDDGTLRIW----HGGNGNS--QNCFYGHSQSIVS 294
Query: 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV 310
            S  G     +++ S D  VR+W      +++ +  + ++ V GVP+
Sbjct: 295 ASWVGDDK--VISCSMDGSVRLW------SLKQNTLLALSIVDGVPI 333

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 124/288 (43%), Gaps = 25/288 (8%)
Query: 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQ--RCFKGHNGP 208
           +H+  +   R  P +   +    P  + +VLV     H  +    G C      +GH   
Sbjct: 124 NHEGEVNRARYMPQNPHIIATKTP--SSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKE 181
Query: 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQA-LKATLYGHEKPIKLMSVA 267
              LS     + SG +L S  +D TV LW +++  K G+    KA   GH   ++ ++  
Sbjct: 182 GYGLS--WNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWH 238
Query: 268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV 327
                L  +++ D K+ +WDT +++  + S  V   +     +    + S   +A+GS+ 
Sbjct: 239 LLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY-SEFILATGSAD 297
Query: 328 VTI---DLRTMQ-KVMTPAICKPILHSFSIMP-SKSLICTGGIGKAMT-WDIRR------ 375
            T+   DLR ++ K+ T    K  +      P +++++ + G  + +  WD+ +      
Sbjct: 298 KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 376 SQDAVK--PQPMAELDGHVGSVTQLHMDPYK--IVTGGRDDLRINIWE 419
           ++DA    P+ +    GH   ++    +P +  ++    +D  + IW+
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 405

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	501
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.78
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.65
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.61
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.59
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.58
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.57
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.57
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.56
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.56
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.55
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.55
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.51
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.46
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.46
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.4
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.39
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.34
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.34
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.33
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.32
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.28
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.28
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.26
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.25
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.24
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.24
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.24
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.16
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.16
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.16
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.14
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.13
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.13
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.13
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.11
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.1
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.09
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.09
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.06
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.01
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.99
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.98
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.97
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.96
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.92
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.89
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.88
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.85
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.83
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.82
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.77
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.77
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.76
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.76
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.74
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.73
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.7
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.7
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.69
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.69
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.68
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.63
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.62
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.61
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.61
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.59
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.55
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.51
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.5
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.49
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.47
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.44
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.38
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.38
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.33
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.31
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.3
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.24
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.24
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.24
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.24
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.19
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.19
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.19
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.17
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.08
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.08
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.99
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.97
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.96
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.92
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.91
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.89
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.89
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.88
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.87
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.86
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.81
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.79
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.76
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.73
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.69
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.69
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.68
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.65
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.51
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.48
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.44
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.42
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.34
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.21
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.21
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.2
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.04
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.02
3ott_A	758	Two-component system sensor histidine kinase; beta	97.02
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.01
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.96
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.96
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.9
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.86
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.77
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.7
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.67
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.52
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.52
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.4
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.4
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.38
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.27
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.17
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.09
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.04
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.94
3ott_A	758	Two-component system sensor histidine kinase; beta	95.8
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.7
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.62
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	95.53
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.53
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.05
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.77
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.52
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.49
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.38
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.79
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.85
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.45
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.99
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.85
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.57
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	89.44
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	88.34
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	85.68
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.57
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	81.91
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	80.58

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-53  Score=412.98  Aligned_cols=413  Identities=18%  Similarity=0.263  Sum_probs=344.2

Q ss_pred             CCCCCCcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCcccc--------CCCCCcchhH
Q 010784           12 SPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLV--------SGSLPTVRVR   83 (501)
Q Consensus        12 ~~~~~~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~~~--------~~~~~~~~~~   83 (501)
                      +|....+.+..||.|++.+||+||++++|+++++|||+|+.++.++.+|+++++++......        ........|+
T Consensus        11 ~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk   90 (445)
T 2ovr_B           11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWK   90 (445)
T ss_dssp             CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHH
T ss_pred             CccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHH
Confidence            45667889999999999999999999999999999999999999999999999876421110        0001235689


Q ss_pred             HHHHHHHHHhhhccccCCee-eEEEecCCCC-ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEe
Q 010784           84 EAYLARRIALLQFKFVDPLD-VCFYSVAKPH-DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRL  161 (501)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i-~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~  161 (501)
                      ..|.+++....+|+.+.... ..+..|...+ +|+.+  ++.++++|+.|+.|++||+.++ +.+..+.+|.+.|++++|
T Consensus        91 ~~~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~  167 (445)
T 2ovr_B           91 SAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGHTGGVWSSQM  167 (445)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEECCCCSSCEEEEEE
T ss_pred             HHHhhhhhhhhcccCCCcceeEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCC-cEEEEEcCCCCCEEEEEe
Confidence            99999988888898877643 4566676664 55554  5889999999999999999985 788899999999999999


Q ss_pred             eccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEec
Q 010784          162 FPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSL  239 (501)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~  239 (501)
                      ++               +++++|+.||+|++||  +++.+..+.+|...|.++.|+      ++.+++|+.||.|++||+
T Consensus       168 ~~---------------~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~------~~~l~s~s~dg~i~~wd~  226 (445)
T 2ovr_B          168 RD---------------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH------EKRVVSGSRDATLRVWDI  226 (445)
T ss_dssp             ET---------------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE------TTEEEEEETTSEEEEEES
T ss_pred             cC---------------CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec------CCEEEEEeCCCEEEEEEC
Confidence            64               7999999999999999  788889999999999999984      468999999999999999


Q ss_pred             cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784          240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML  319 (501)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (501)
                      .++.      ....+.+|...|.++.+   ++.++++|+.||.|++||+++++.+....     .+...+.++.+++..+
T Consensus       227 ~~~~------~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l  292 (445)
T 2ovr_B          227 ETGQ------CLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQ-----GHTNRVYSLQFDGIHV  292 (445)
T ss_dssp             SSCC------EEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEEC-----CCSSCEEEEEECSSEE
T ss_pred             CCCc------EEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEec-----CCCCceEEEEECCCEE
Confidence            9876      47788899999999988   46689999999999999999876543322     3455677777866666


Q ss_pred             EEEeC-CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC---cccC
Q 010784          320 YIASG-SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG---HVGS  394 (501)
Q Consensus       320 ~~~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~---h~~~  394 (501)
                      +.++. +.|++||+++++.+..+.+|...+.++.+  +++++++|+.|+ |++||+++++..      ..+.+   |...
T Consensus       293 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~  364 (445)
T 2ovr_B          293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL------QTLQGPNKHQSA  364 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE------EEECSTTSCSSC
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEE------EEEccCCCCCCC
Confidence            66553 58999999999999999999999998887  466999999888 999999987654      66655   8889


Q ss_pred             eEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCce----EEEeecc
Q 010784          395 VTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGL----LQFRDFS  470 (501)
Q Consensus       395 v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~----i~~w~~~  470 (501)
                      |++++|++ .++++|+.||.|++||+.+++.+..+......++...|.+++|+|++.++++|+  .||.    |.+||++
T Consensus       365 v~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~--~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          365 VTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS--RNGTEETKLLVLDFD  441 (445)
T ss_dssp             EEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC--SSSSSCCEEEEEECC
T ss_pred             EEEEEECC-CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc--cCCCCccEEEEEECC
Confidence            99999976 466677799999999999999988874333346788999999999999999999  5576    9999998


Q ss_pred             CCc
Q 010784          471 NAT  473 (501)
Q Consensus       471 ~~~  473 (501)
                      ...
T Consensus       442 ~~~  444 (445)
T 2ovr_B          442 VDM  444 (445)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.2e-50  Score=395.52  Aligned_cols=412  Identities=17%  Similarity=0.229  Sum_probs=321.1

Q ss_pred             CCCCCCcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCC-chhHHHHHhhhcCccc-------------cCCCC
Q 010784           12 SPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYS-DSVWQRLFREQWPQVL-------------VSGSL   77 (501)
Q Consensus        12 ~~~~~~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~-~~lW~~~~~~~~~~~~-------------~~~~~   77 (501)
                      .|....+.|..||.|++++||+||++++|+++++|||.|++++.+ +.||++++.++.....             .....
T Consensus         7 ~~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (464)
T 3v7d_B            7 KDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLS   86 (464)
T ss_dssp             --CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSC
T ss_pred             CcccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcc
Confidence            456677899999999999999999999999999999999999998 8999999876532100             00111


Q ss_pred             CcchhHHHHHHHHHHhhhccccCC--eeeEEEecCCC-CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc
Q 010784           78 PTVRVREAYLARRIALLQFKFVDP--LDVCFYSVAKP-HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA  154 (501)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~  154 (501)
                      ....++..|.++.....+|.....  ....+..|... ++++.++  +.++++|+.|+.|++||+.++ +.+..+.+|.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~~  163 (464)
T 3v7d_B           87 QQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINK-KFLLQLSGHDG  163 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT-EEEEEECCCSS
T ss_pred             cchhhHHHHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCC-cEEEEEeCCCc
Confidence            223356667676666777766554  34566777777 4676665  569999999999999999985 88899999999


Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA  232 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg  232 (501)
                      .|++++|++             ++ +|++|+.||+|++||  +++.+..+.+|...|.+++|++  .+++.++++|+.||
T Consensus       164 ~V~~l~~~~-------------~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~~l~s~s~d~  227 (464)
T 3v7d_B          164 GVWALKYAH-------------GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE--YKNIKYIVTGSRDN  227 (464)
T ss_dssp             CEEEEEECS-------------TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEE--SSSCEEEEEEETTS
T ss_pred             CEEEEEEcC-------------CC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEec--CCCCCEEEEEcCCC
Confidence            999999998             55 999999999999999  7888899999999999999974  35678999999999


Q ss_pred             cEEEEeccCCCcccc-----------------ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc
Q 010784          233 TVRLWSLSSSGKRGQ-----------------QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR  295 (501)
Q Consensus       233 ~i~iwd~~~~~~~~~-----------------~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~  295 (501)
                      .|++||+.+......                 ......+.+|...|.++.  + ++.++++|+.||.|++||+++++.+.
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~  304 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLY  304 (464)
T ss_dssp             CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            999999987653110                 012456778999998774  3 56799999999999999999886543


Q ss_pred             ceecccceecCCCceeeecCCCeEEE--Ee-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEE
Q 010784          296 SSCCVGMTSVPGVPVDMKCHESMLYI--AS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTW  371 (501)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iw  371 (501)
                      ...     .+...+.++.++++...+  ++ ++.|++||+++++.+..+.+|...|.+++++  +.++++++.|+ |++|
T Consensus       305 ~~~-----~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vw  377 (464)
T 3v7d_B          305 ILS-----GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW  377 (464)
T ss_dssp             EEC-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred             Eec-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEE
Confidence            321     345566777776654333  33 3589999999999999999999999999997  57999999888 9999


Q ss_pred             ecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784          372 DIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG  450 (501)
Q Consensus       372 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  450 (501)
                      |+.+.+..      ... .|...+..++++++ .++++|+ ||.|++||+.+++.+..+.    ..|...|.+++|+  +
T Consensus       378 d~~~~~~~------~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~----~~~~~~v~~v~~~--~  443 (464)
T 3v7d_B          378 DANDYSRK------FSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI----LKDADQIWSVNFK--G  443 (464)
T ss_dssp             ETTTCCEE------EEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT----TTTCSEEEEEEEE--T
T ss_pred             ECCCCcee------eee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh----ccCCCcEEEEEec--C
Confidence            99986533      332 35667888899999 8888886 9999999999999988743    4567889999997  4


Q ss_pred             cEEEEeecCCCceEEEe
Q 010784          451 CRIVTASYGEPGLLQFR  467 (501)
Q Consensus       451 ~~l~s~~~d~~g~i~~w  467 (501)
                      +.+++++. .+|.+.+|
T Consensus       444 ~~l~~~~~-~~g~~~i~  459 (464)
T 3v7d_B          444 KTLVAAVE-KDGQSFLE  459 (464)
T ss_dssp             TEEEEEEE-ETTEEEEE
T ss_pred             CEEEEEEE-eCCeEEEE
Confidence            44444443 45655444

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.1e-49  Score=384.90  Aligned_cols=371  Identities=19%  Similarity=0.286  Sum_probs=294.2

Q ss_pred             CCCCCCcccccccHH----HHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCc---------------cc
Q 010784           12 SPSPSTTAIADLNED----AVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQ---------------VL   72 (501)
Q Consensus        12 ~~~~~~~~~~~Lp~e----~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~---------------~~   72 (501)
                      .|....+.|..||.|    ++.+||+||++++|+++++|||+|+.++.++.||+++|.+++..               .+
T Consensus         3 ~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~   82 (435)
T 1p22_A            3 AIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYL   82 (435)
T ss_dssp             CCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGC
T ss_pred             ChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhh
Confidence            355668899999999    99999999999999999999999999999999999999877421               00


Q ss_pred             ----cCC-CCCcchhHHHHHHH-----HHHhhhccccCCeeeEEEec---CCCCceEEeeCCcEEEeecCCeeeEEEEec
Q 010784           73 ----VSG-SLPTVRVREAYLAR-----RIALLQFKFVDPLDVCFYSV---AKPHDHILLDNNDIFSTQGSSIQNIKIDNF  139 (501)
Q Consensus        73 ----~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~  139 (501)
                          +.. ......+...+..+     .....+|..+......+..+   ..+|.|+.+  ++.++++|+.|+.|++||.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~  160 (435)
T 1p22_A           83 FKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDK  160 (435)
T ss_dssp             C---------CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEES
T ss_pred             hccCCCCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeC
Confidence                000 00111222222222     13445677766554444433   334777666  7899999999999999999


Q ss_pred             ccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeec
Q 010784          140 LSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLL  217 (501)
Q Consensus       140 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~  217 (501)
                      .++ +....+.+|.+.|++++|               ++++|++|+.||+|++||  +++.+..+.+|...|.+++|+  
T Consensus       161 ~~~-~~~~~~~~h~~~v~~l~~---------------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--  222 (435)
T 1p22_A          161 NTL-ECKRILTGHTGSVLCLQY---------------DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--  222 (435)
T ss_dssp             SSC-CEEEEECCCSSCEEEEEC---------------CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--
T ss_pred             CCC-eEEEEEcCCCCcEEEEEE---------------CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--
Confidence            985 788899999999999998               358999999999999999  788889999999999999984  


Q ss_pred             CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784          218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  297 (501)
                          +.++++|+.||.|++||+.++..   ......+.+|...|.++++   +++++++|+.||.|++||+++++.    
T Consensus       223 ----~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~----  288 (435)
T 1p22_A          223 ----NGMMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEF----  288 (435)
T ss_dssp             ----TTEEEEEETTSCEEEEECSSSSC---CEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCE----
T ss_pred             ----CCEEEEeeCCCcEEEEeCCCCCC---ceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcE----
Confidence                45999999999999999988763   1123667889999999998   456899999999999999987642    


Q ss_pred             ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCC
Q 010784          298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRS  376 (501)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~  376 (501)
                                                              +..+.+|...|.++.+  ++.++++|+.|+ |++||++++
T Consensus       289 ----------------------------------------~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~  326 (435)
T 1p22_A          289 ----------------------------------------VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG  326 (435)
T ss_dssp             ----------------------------------------EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred             ----------------------------------------EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC
Confidence                                                    3455678899999998  567999999888 999999987


Q ss_pred             CCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcc---------cccccccCCCCCCCcceeeeEee
Q 010784          377 QDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGM---------LANSLLCNYPEEADISTGCSAMA  447 (501)
Q Consensus       377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s  447 (501)
                      +..      ..+.+|...|.++++++ .++++|+.||.|++||+.+++         ++..+     .+|...|.+++| 
T Consensus       327 ~~~------~~~~~h~~~v~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~-  393 (435)
T 1p22_A          327 ACL------RVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-----VEHSGRVFRLQF-  393 (435)
T ss_dssp             CEE------EEECCCSSCEEEEECCS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-----CCCSSCCCCEEE-
T ss_pred             CEE------EEEeCCcCcEEEEEecC-CEEEEEeCCCcEEEEECCCCCCccccccchheeec-----cCCCCCeEEEEe-
Confidence            654      88899999999999943 567777899999999998766         56666     567889999999 


Q ss_pred             ccccEEEEeecCCCceEEEeeccCCcc
Q 010784          448 VSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       448 ~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                       ++++|++|+  .||.|++||+..+..
T Consensus       394 -~~~~l~s~s--~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          394 -DEFQIVSSS--HDDTILIWDFLNDPA  417 (435)
T ss_dssp             -CSSCEEECC--SSSEEEEEC------
T ss_pred             -CCCEEEEEe--CCCEEEEEECCCCCC
Confidence             888999999  669999999987664

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.6e-47  Score=380.10  Aligned_cols=371  Identities=11%  Similarity=0.128  Sum_probs=295.1

Q ss_pred             eeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCc---------------
Q 010784          103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHE---------------  166 (501)
Q Consensus       103 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~---------------  166 (501)
                      ...+..|...|++++|+|+|.++|+|+.|+.|+|||+.++. .....+.+|.+.|.+++|+|++.               
T Consensus        52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v  131 (611)
T 1nr0_A           52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  131 (611)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence            34566788889999999999999999999999999986532 34557889999999999999764               


Q ss_pred             ----------------CcccccCCCCcCc-EEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEE
Q 010784          167 ----------------TSLFRSEPQRTEN-VLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILAS  227 (501)
Q Consensus       167 ----------------~~~~~~~~~~~~~-~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~s  227 (501)
                                      ..+.++.|+|++. .|++|+.|++|++||  .++++..+.+|...|.+++|+    |++++|++
T Consensus       132 ~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs----pdg~~las  207 (611)
T 1nr0_A          132 FLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN----PDGSLFAS  207 (611)
T ss_dssp             EETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC----TTSSEEEE
T ss_pred             EEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEEC----CCCCEEEE
Confidence                            1345677888886 699999999999999  667788899999999999997    89999999


Q ss_pred             eeCCCcEEEEeccCCCccccccceeecc-------CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          228 GGEDATVRLWSLSSSGKRGQQALKATLY-------GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       228 g~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      |+.|++|++||+.++..      ...+.       +|.+.|.+++|+| ++.+|++++.|++|++||+++++.+......
T Consensus       208 ~s~D~~i~lwd~~~g~~------~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~  280 (611)
T 1nr0_A          208 TGGDGTIVLYNGVDGTK------TGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVG  280 (611)
T ss_dssp             EETTSCEEEEETTTCCE------EEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EECCCcEEEEECCCCcE------eeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence            99999999999988763      44442       7999999999998 7889999999999999999988654433211


Q ss_pred             cceecCCCceeeecCCCeEEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784          301 GMTSVPGVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD  378 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~  378 (501)
                        .........+.+.+..++.+. ++.+++||.++++....+.+|...|.+++|+|++++|++++.|+ |++||+.+++.
T Consensus       281 --~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          281 --TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS  358 (611)
T ss_dssp             --SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             --CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence              011222334445555444444 45899999999988888999999999999999999999999999 99999987543


Q ss_pred             CCCC-----CC---------------------------------------------------------------------
Q 010784          379 AVKP-----QP---------------------------------------------------------------------  384 (501)
Q Consensus       379 ~~~~-----~~---------------------------------------------------------------------  384 (501)
                      ....     ..                                                                     
T Consensus       359 ~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~  438 (611)
T 1nr0_A          359 NRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS  438 (611)
T ss_dssp             EECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred             eeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEe
Confidence            1000     00                                                                     


Q ss_pred             ---cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC
Q 010784          385 ---MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE  460 (501)
Q Consensus       385 ---~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~  460 (501)
                         +..+ .|...+.+++|+|+ +++++|+.|++|++||+.+++......    .+|...|++++|+|||++|++++  .
T Consensus       439 ~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~----~~h~~~v~~v~fspdg~~las~s--~  511 (611)
T 1nr0_A          439 HGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT----IVHPAEITSVAFSNNGAFLVATD--Q  511 (611)
T ss_dssp             TTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE----EECSSCEEEEEECTTSSEEEEEE--T
T ss_pred             CCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec----cCCCCceEEEEECCCCCEEEEEc--C
Confidence               0000 12345789999999 999999999999999998754321111    35678899999999999999999  6


Q ss_pred             CceEEEeeccC------------------------CccceeecCCCCceeeecccCC
Q 010784          461 PGLLQFRDFSN------------------------ATCPVLKHEVQNDSKFWGPQCY  493 (501)
Q Consensus       461 ~g~i~~w~~~~------------------------~~~~~~s~~~d~~~~~w~~~~~  493 (501)
                      |+.|++|++..                        ++..+++++.|+++++|+++..
T Consensus       512 d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~  568 (611)
T 1nr0_A          512 SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP  568 (611)
T ss_dssp             TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             CCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence            69999999754                        2345789999999999998754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-47  Score=363.93  Aligned_cols=293  Identities=19%  Similarity=0.298  Sum_probs=262.9

Q ss_pred             ccccCCeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCC
Q 010784           96 FKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQ  175 (501)
Q Consensus        96 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~  175 (501)
                      |....+....+..|..+|++++|+|++.++++|+.|+.|++||+.++ +...++.+|.+.|++++|+|            
T Consensus        94 ~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-~~~~~l~~h~~~V~~v~~~~------------  160 (410)
T 1vyh_C           94 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDH------------  160 (410)
T ss_dssp             CCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCCSSCEEEEEECT------------
T ss_pred             cccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeccCCcEEEEEEcC------------
Confidence            43444445677889999999999999999999999999999999985 88899999999999999999            


Q ss_pred             CcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784          176 RTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       176 ~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                       ++++|++|+.||+|++||  .++++..+.+|...|.+++|+    +++++|++|+.|++|++||+.++.      ++..
T Consensus       161 -~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~----p~~~~l~s~s~D~~i~~wd~~~~~------~~~~  229 (410)
T 1vyh_C          161 -SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM----PNGDHIVSASRDKTIKMWEVQTGY------CVKT  229 (410)
T ss_dssp             -TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEEC----SSSSEEEEEETTSEEEEEETTTCC------EEEE
T ss_pred             -CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEe----CCCCEEEEEeCCCeEEEEECCCCc------EEEE
Confidence             889999999999999999  677889999999999999997    789999999999999999999876      4788


Q ss_pred             ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784          254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR  333 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  333 (501)
                      +.+|...|.++.+++ ++.+|++|+.|+.|++||+++++.                                        
T Consensus       230 ~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~----------------------------------------  268 (410)
T 1vyh_C          230 FTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKEC----------------------------------------  268 (410)
T ss_dssp             EECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCE----------------------------------------
T ss_pred             EeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCce----------------------------------------
Confidence            899999999999997 788999999999999999987642                                        


Q ss_pred             CCceEeeeccCCCcEEEEEEcCC--------------------CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcc
Q 010784          334 TMQKVMTPAICKPILHSFSIMPS--------------------KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHV  392 (501)
Q Consensus       334 ~~~~~~~~~~~~~~v~~v~~~~~--------------------~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~  392 (501)
                          ...+..|...|.+++|+|+                    +.+|++|+.|+ |++||+++++..      ..+.+|.
T Consensus       269 ----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~------~~~~~h~  338 (410)
T 1vyh_C          269 ----KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL------MTLVGHD  338 (410)
T ss_dssp             ----EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE------EEEECCS
T ss_pred             ----eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE------EEEECCC
Confidence                2345678888999999986                    67899999999 999999987654      8889999


Q ss_pred             cCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          393 GSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       393 ~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ..|++++|+|+ +++++|+.||.|++||+.+++++.++     .+|...|++++|+|++.+|++|+  .||.|++|++.
T Consensus       339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~l~sgs--~D~~i~vW~~r  410 (410)
T 1vyh_C          339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-----NAHEHFVTSLDFHKTAPYVVTGS--VDQTVKVWECR  410 (410)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-----ECCSSCEEEEEECSSSSCEEEEE--TTSEEEEEC--
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-----cCCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEeCC
Confidence            99999999999 88889999999999999999999998     56788999999999999999999  66999999863

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-45  Score=371.39  Aligned_cols=352  Identities=14%  Similarity=0.219  Sum_probs=273.4

Q ss_pred             EEecCCCCceEEeeCCcE-EEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          106 FYSVAKPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      +..|...|++++|+|++. .+++|+.|+.|++||..++ +...++.+|.+.|++++|+|             ++++|++|
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fsp-------------dg~~las~  208 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNP-------------DGSLFAST  208 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECT-------------TSSEEEEE
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECC-------------CCCEEEEE
Confidence            456777899999999986 5999999999999998874 77889999999999999999             89999999


Q ss_pred             eCCCceEEec--CCceeeecc-------CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc--------
Q 010784          185 SCDHSIRLWW--KGSCQRCFK-------GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ--------  247 (501)
Q Consensus       185 ~~dg~i~vwd--~~~~~~~~~-------~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--------  247 (501)
                      +.||+|++||  .++.+..+.       +|.+.|.+++|+    |++++|++|+.|++|++||+.+++....        
T Consensus       209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s----pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~  284 (611)
T 1nr0_A          209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS----PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE  284 (611)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC----TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred             ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC----CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence            9999999999  677777763       799999999997    8999999999999999999987542110        


Q ss_pred             -----------------------------ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784          248 -----------------------------QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC  298 (501)
Q Consensus       248 -----------------------------~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  298 (501)
                                                   ......+.+|...|++++|+| ++++|++++.|+.|++||+.+++......
T Consensus       285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~  363 (611)
T 1nr0_A          285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFP  363 (611)
T ss_dssp             GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSS
T ss_pred             ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecc
Confidence                                         012345568999999999998 88899999999999999999876533210


Q ss_pred             cccceecCCCceeeecCCCeEEEEe--CCcEEEEEcCCCc----------------------------------------
Q 010784          299 CVGMTSVPGVPVDMKCHESMLYIAS--GSSVVTIDLRTMQ----------------------------------------  336 (501)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~----------------------------------------  336 (501)
                          ..+...+.++.+.++..+++.  ++.+++|++....                                        
T Consensus       364 ----~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~  439 (611)
T 1nr0_A          364 ----DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH  439 (611)
T ss_dssp             ----CSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred             ----cCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence                112233333333333222221  2345555543211                                        


Q ss_pred             -eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC
Q 010784          337 -KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL  413 (501)
Q Consensus       337 -~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg  413 (501)
                       .+..+. |...+.+++|+|+|++|++|+.|+ |++||+......    .+.. .+|...|++++|+|+ ++|++++.|+
T Consensus       440 ~~~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~----~~~~-~~h~~~v~~v~fspdg~~las~s~d~  513 (611)
T 1nr0_A          440 GKLTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS----EVKT-IVHPAEITSVAFSNNGAFLVATDQSR  513 (611)
T ss_dssp             TEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE----EEEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             Cceeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee----eeec-cCCCCceEEEEECCCCCEEEEEcCCC
Confidence             122222 567789999999999999999999 999999875321    1233 578999999999999 9999999999


Q ss_pred             cEEEEeCCC-cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc------------------
Q 010784          414 RINIWETDT-GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC------------------  474 (501)
Q Consensus       414 ~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~------------------  474 (501)
                      +|++|++.+ ++++....   ...|...|.+++|+|||++|++|+  .|+.|++|++..+..                  
T Consensus       514 ~v~~w~~~~~~~~~~~~~---~~~H~~~V~~v~fspdg~~lasgs--~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~  588 (611)
T 1nr0_A          514 KVIPYSVANNFELAHTNS---WTFHTAKVACVSWSPDNVRLATGS--LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI  588 (611)
T ss_dssp             CEEEEEGGGTTEESCCCC---CCCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE
T ss_pred             CEEEEEcCCCCceeeeee---eeecccceeEEEECCCCCEEEEEE--CCCcEEEEECCCcccccchhhccCcccCeeEEE
Confidence            999999987 55544311   134888999999999999999999  669999999764321                  


Q ss_pred             -----ceeecCCCCceeeeccc
Q 010784          475 -----PVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       475 -----~~~s~~~d~~~~~w~~~  491 (501)
                           .+++++.|+++++|++.
T Consensus       589 fs~d~~l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          589 WLNETTIVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             EEETTEEEEEETTSCEEEEECC
T ss_pred             EcCCCEEEEecCCCCEEEEecc
Confidence                 15688999999999873

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.4e-45  Score=334.31  Aligned_cols=291  Identities=18%  Similarity=0.264  Sum_probs=253.7

Q ss_pred             eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      ....+..|...|++++|+|++.++++|+.|+.|++||+.++ ..+..+.+|...|.+++|+|             ++++|
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-~~~~~~~~~~~~v~~~~~~~-------------~~~~l   70 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-VEVRSIQVTETPVRAGKFIA-------------RKNWI   70 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEG-------------GGTEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-ceeEEeeccCCcEEEEEEeC-------------CCCEE
Confidence            34567888999999999999999999999999999999985 77889999999999999999             89999


Q ss_pred             EEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          182 VTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       182 ~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      ++|+.|++|++||  +++.+..+.+|...|.+++|+    +++++|++|+.||+|++||+.++..     +...+.+|..
T Consensus        71 ~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~sgs~D~~v~lWd~~~~~~-----~~~~~~~h~~  141 (304)
T 2ynn_A           71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH----PTKPYVLSGSDDLTVKLWNWENNWA-----LEQTFEGHEH  141 (304)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----SSSSEEEEEETTSCEEEEEGGGTTE-----EEEEECCCCS
T ss_pred             EEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc----CCCCEEEEECCCCeEEEEECCCCcc-----hhhhhcccCC
Confidence            9999999999999  788889999999999999997    8899999999999999999988754     5677889999


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      .|.+++|+|.++.+|++|+.|+.|++||+++.....                                           .
T Consensus       142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~-------------------------------------------~  178 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF-------------------------------------------T  178 (304)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE-------------------------------------------E
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc-------------------------------------------e
Confidence            999999998778899999999999999998764311                                           1


Q ss_pred             eeccCCCcEEEEEEcC--CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcE
Q 010784          340 TPAICKPILHSFSIMP--SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRI  415 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i  415 (501)
                      ....|...+..+.++|  ++.+|++|+.|+ |++||+++++.+      .++.+|...|.+++|+|+ .++++|+.||+|
T Consensus       179 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~------~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i  252 (304)
T 2ynn_A          179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV------ATLEGHMSNVSFAVFHPTLPIIISGSEDGTL  252 (304)
T ss_dssp             EECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE------EEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred             eccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc------eeeCCCCCCEEEEEECCCCCEEEEEcCCCeE
Confidence            1223567788899887  678999999999 999999987654      889999999999999999 999999999999


Q ss_pred             EEEeCCCcccccccccCCCCCCCcceeeeEeecccc--EEEEeecCCCceEEEeeccCC
Q 010784          416 NIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC--RIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       416 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      ++||+.+++++.++     ..|...+.+++|+|++.  ++++|+  + ..+.+|++..+
T Consensus       253 ~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~asg~--~-~g~~~~~~~~~  303 (304)
T 2ynn_A          253 KIWNSSTYKVEKTL-----NVGLERSWCIATHPTGRKNYIASGF--D-NGFTVLSLGND  303 (304)
T ss_dssp             EEEETTTCCEEEEE-----CCSSSSEEEEEECTTCGGGCEEEEE--T-TEEEEEECC--
T ss_pred             EEEECCCCceeeec-----cCCCccEEEEEECCCCCceEEEEec--C-CceEEEEeccC
Confidence            99999999999999     45677899999999875  577775  3 45777776653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.5e-45  Score=338.72  Aligned_cols=283  Identities=18%  Similarity=0.208  Sum_probs=252.3

Q ss_pred             EecCCCCceEEeeCC----cEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          107 YSVAKPHDHILLDNN----DIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~----~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      ..|..+|.+++|+++    +.++++|+.|++|+||++..+. .....+.+|...|.+++|++             ++.++
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~-------------~~~~l   95 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-------------TLPIA   95 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS-------------SSSEE
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC-------------CCCEE
Confidence            457788999999874    6799999999999999987642 34557899999999999999             78999


Q ss_pred             EEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          182 VTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       182 ~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      ++++.|++|++||  +++.+..+..|...+.+++|+    |++++|++|+.||.|++|++.++..      ...+..|..
T Consensus        96 ~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s----pdg~~l~~g~~dg~v~i~~~~~~~~------~~~~~~~~~  165 (321)
T 3ow8_A           96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS----PDSQYLATGTHVGKVNIFGVESGKK------EYSLDTRGK  165 (321)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC----TTSSEEEEECTTSEEEEEETTTCSE------EEEEECSSS
T ss_pred             EEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC----CCCCEEEEEcCCCcEEEEEcCCCce------eEEecCCCc
Confidence            9999999999999  778888899999999999997    8999999999999999999998763      667788999


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      .|.+++|+| ++++|++|+.||.|++||+++++                                            .+.
T Consensus       166 ~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~--------------------------------------------~~~  200 (321)
T 3ow8_A          166 FILSIAYSP-DGKYLASGAIDGIINIFDIATGK--------------------------------------------LLH  200 (321)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTTE--------------------------------------------EEE
T ss_pred             eEEEEEECC-CCCEEEEEcCCCeEEEEECCCCc--------------------------------------------EEE
Confidence            999999998 78899999999999999998763                                            334


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i  417 (501)
                      .+.+|...|.+++|+|++++|++|+.|+ |++||+++++..      ..+.+|...|.+++|+|+ .++++++.|++|++
T Consensus       201 ~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~------~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~i  274 (321)
T 3ow8_A          201 TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA------GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKV  274 (321)
T ss_dssp             EECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee------EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence            5667899999999999999999999999 999999986544      788999999999999999 88999999999999


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ||+.+++++.++     .+|...|.+++|+|+|++|++++  .||.|++||..
T Consensus       275 wd~~~~~~~~~~-----~~h~~~v~~v~~s~~g~~l~s~~--~d~~i~vwd~p  320 (321)
T 3ow8_A          275 WDVGTRTCVHTF-----FDHQDQVWGVKYNGNGSKIVSVG--DDQEIHIYDCP  320 (321)
T ss_dssp             EETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEE--TTCCEEEEECC
T ss_pred             EeCCCCEEEEEE-----cCCCCcEEEEEECCCCCEEEEEe--CCCeEEEEeCC
Confidence            999999999999     56788999999999999999999  66999999963

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.2e-45  Score=364.34  Aligned_cols=341  Identities=19%  Similarity=0.297  Sum_probs=292.5

Q ss_pred             CCeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784          100 DPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN  179 (501)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~  179 (501)
                      ......+..+...|.+++|+|++.++++|+.|+.+++|+..  .+.+..+.+|...|++++|+|             +++
T Consensus       211 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~~~~~~~~v~~v~~~~-------------d~~  275 (577)
T 2ymu_A          211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVAFRP-------------DGQ  275 (577)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT--SCEEEEECCCSSCEEEEEECT-------------TSS
T ss_pred             CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEEecCCCCEEEEEEcC-------------CCC
Confidence            33445566778889999999999999999999999999976  477888999999999999999             899


Q ss_pred             EEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784          180 VLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE  258 (501)
Q Consensus       180 ~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  258 (501)
                      .|++++.|+.|++|| .++.+..+.+|...|.+++|+    +++++|++++.||.|++||+....       ...+.+|.
T Consensus       276 ~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~t~~~d~~i~~w~~~~~~-------~~~~~~~~  344 (577)
T 2ymu_A          276 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS----PDGQTIASASDDKTVKLWNRNGQH-------LQTLTGHS  344 (577)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEEC----TTSSEEEEEETTSCEEEEETTSCE-------EEEECCCS
T ss_pred             EEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEEC----CCCCEEEEEeCCCeEEEEeCCCCe-------eEEEeCCC
Confidence            999999999999999 788888999999999999997    899999999999999999987643       56778899


Q ss_pred             CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe---CCcEEEEEcCCC
Q 010784          259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS---GSSVVTIDLRTM  335 (501)
Q Consensus       259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~  335 (501)
                      ..|.+++|+| ++.++++++.|+.|++||.. ++.+..     ...+...+.++.++++..++++   ++.|++||. ++
T Consensus       345 ~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~-~~~~~~-----~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~  416 (577)
T 2ymu_A          345 SSVWGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQT-----LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG  416 (577)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSEEEEEETT-CCEEEE-----EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TC
T ss_pred             CCEEEEEECC-CCCEEEEEeCCCEEEEEcCC-CCEEEE-----ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CC
Confidence            9999999998 78899999999999999964 332221     1134556677777766544443   348999995 56


Q ss_pred             ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC
Q 010784          336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL  413 (501)
Q Consensus       336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg  413 (501)
                      +.+..+.+|...|.+++|+|++++|++++.|+ |++||... +      .+..+.+|...|++++|+|+ +++++++.|+
T Consensus       417 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~------~~~~~~~~~~~v~~~~~spd~~~las~~~d~  489 (577)
T 2ymu_A          417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q------LLQTLTGHSSSVRGVAFSPDGQTIASASDDK  489 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C------EEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred             CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            77888999999999999999999999999999 99999643 2      34788899999999999999 9999999999


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec--------------------cCCc
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF--------------------SNAT  473 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~--------------------~~~~  473 (501)
                      .|++||. +++++..+     .+|...|++++|+|+|++|++++  .||.|++||.                    .+++
T Consensus       490 ~i~iw~~-~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~--~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg  561 (577)
T 2ymu_A          490 TVKLWNR-NGQLLQTL-----TGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG  561 (577)
T ss_dssp             EEEEEET-TSCEEEEE-----ECCSSCEEEEEECTTSSCEEEEE--TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS
T ss_pred             EEEEEcC-CCCEEEEE-----eCCCCCEEEEEEcCCCCEEEEEE--CcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCC
Confidence            9999995 68888888     56788999999999999999999  6699999993                    3456


Q ss_pred             cceeecCCCCceeeec
Q 010784          474 CPVLKHEVQNDSKFWG  489 (501)
Q Consensus       474 ~~~~s~~~d~~~~~w~  489 (501)
                      +.+++++.|+++++|+
T Consensus       562 ~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          562 QTIASASSDKTVKLWN  577 (577)
T ss_dssp             SCEEEEETTSCEEEEC
T ss_pred             CEEEEEeCCCEEEEeC
Confidence            6788999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.5e-44  Score=334.41  Aligned_cols=283  Identities=16%  Similarity=0.236  Sum_probs=249.7

Q ss_pred             eeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784          103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV  182 (501)
Q Consensus       103 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (501)
                      ...+..|..+|++++|++++.++++|+.|+.|++||..++ +....+..|...|.+++|+|             ++++|+
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~~~~~~v~~~~~s~-------------~~~~l~  113 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAP-------------SGNYVA  113 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-CEEEEEECSSSCEEEEEECT-------------TSSEEE
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-CcceEeecCCccEEEEEECC-------------CCCEEE
Confidence            4567778899999999999999999999999999999985 77888899999999999999             899999


Q ss_pred             EeeCCCceEEec--CC----ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          183 TSSCDHSIRLWW--KG----SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       183 s~~~dg~i~vwd--~~----~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      +|+.|+.|++||  .+    .....+.+|.+.|.++.|+    +++ .+++++.|+.|++||+.++.      ....+.+
T Consensus       114 s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~-~l~s~s~d~~i~~wd~~~~~------~~~~~~~  182 (340)
T 1got_B          114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL----DDN-QIVTSSGDTTCALWDIETGQ------QTTTFTG  182 (340)
T ss_dssp             EEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE----ETT-EEEEEETTSCEEEEETTTTE------EEEEECC
T ss_pred             EEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC----CCC-cEEEEECCCcEEEEECCCCc------EEEEEcC
Confidence            999999999998  22    3456678999999999997    444 58999999999999999876      4778899


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      |...|.+++|+| ++.++++|+.|+.|++||+++++                                            
T Consensus       183 h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~--------------------------------------------  217 (340)
T 1got_B          183 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGM--------------------------------------------  217 (340)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCS--------------------------------------------
T ss_pred             CCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCe--------------------------------------------
Confidence            999999999998 78899999999999999998763                                            


Q ss_pred             eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc--CcccCeEEEEecCC-eEEEEecCC
Q 010784          337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD--GHVGSVTQLHMDPY-KIVTGGRDD  412 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~-~~l~~gs~d  412 (501)
                      .+..+.+|...|.+++|+|++++|++|+.|+ |++||+++.+..      ..+.  .+...|++++|+|+ +++++|+.|
T Consensus       218 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~------~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  291 (340)
T 1got_B          218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE------EEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE------EEEccCCcccceEEEEECCCCCEEEEECCC
Confidence            2345667899999999999999999999998 999999986543      3332  33457999999999 999999999


Q ss_pred             CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          413 LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       413 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      |.|++||+.+++.+..+     .+|...|.+++|+|+|++|++|+  .|+.|++||
T Consensus       292 ~~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~s~s--~D~~i~iWd  340 (340)
T 1got_B          292 FNCNVWDALKADRAGVL-----AGHDNRVSCLGVTDDGMAVATGS--WDSFLKIWN  340 (340)
T ss_dssp             SEEEEEETTTCCEEEEE-----ECCSSCEEEEEECTTSSCEEEEE--TTSCEEEEC
T ss_pred             CeEEEEEcccCcEeeEe-----ecCCCcEEEEEEcCCCCEEEEEc--CCccEEecC
Confidence            99999999999998888     57788999999999999999999  669999997

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.7e-44  Score=336.03  Aligned_cols=288  Identities=15%  Similarity=0.171  Sum_probs=237.2

Q ss_pred             EecCCCCceEEeeCCcEEEeecCC------eeeEEEEeccccc---ccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSS------IQNIKIDNFLSES---YYRATLSDHKARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~------d~~i~vw~~~~~~---~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      ..|...|++++|+|||.+||+|+.      |+.+++|+..++.   .......+|...|++++|+|             +
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-------------d  105 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS-------------E  105 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET-------------T
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC-------------C
Confidence            357778999999999999999987      7889999987642   23344567999999999999             5


Q ss_pred             CcEEEEeeCCCceEEec--CCceee----eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQR----CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK  251 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~----~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  251 (501)
                      +. +++++.||+|+|||  +++...    ...+|...|++++|+    +++++|++|+.||.|++||+.++.      .+
T Consensus       106 ~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s----pdg~~l~sgs~dg~v~iwd~~~~~------~~  174 (357)
T 4g56_B          106 KG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF----SDGTQAVSGGKDFSVKVWDLSQKA------VL  174 (357)
T ss_dssp             TE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEEC----SSSSEEEEEETTSCEEEEETTTTE------EE
T ss_pred             CC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC----CCCCEEEEEeCCCeEEEEECCCCc------EE
Confidence            54 56678899999999  443332    344799999999997    899999999999999999999876      57


Q ss_pred             eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784          252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID  331 (501)
Q Consensus       252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  331 (501)
                      ..+.+|...|++++|++.+..++++++.||.|++||+++++....                                   
T Consensus       175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-----------------------------------  219 (357)
T 4g56_B          175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR-----------------------------------  219 (357)
T ss_dssp             EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-----------------------------------
T ss_pred             EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee-----------------------------------
Confidence            888999999999999986667899999999999999998754322                                   


Q ss_pred             cCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEE
Q 010784          332 LRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVT  407 (501)
Q Consensus       332 ~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~  407 (501)
                             .....+...+.+++|+|+ +.+|++|+.|+ |++||+++++..      ..+.+|...|++++|+|+  ++|+
T Consensus       220 -------~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~------~~~~~~~~~v~~l~~sp~~~~~la  286 (357)
T 4g56_B          220 -------IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA------QTSAVHSQNITGLAYSYHSSPFLA  286 (357)
T ss_dssp             -------CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC------EEECCCSSCEEEEEECSSSSCCEE
T ss_pred             -------eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe------EEEeccceeEEEEEEcCCCCCEEE
Confidence                   122345778999999997 67899999888 999999987654      888999999999999997  7899


Q ss_pred             EecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec-cccEEEEeecCCCceEEEeeccCCcc
Q 010784          408 GGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV-SGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       408 ~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      +|+.||+|+|||+++++++..+      +|...|++++|+| ++++|++++  .||.|++|++....+
T Consensus       287 sgs~D~~i~iwd~~~~~~~~~~------~H~~~V~~vafsP~d~~~l~s~s--~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          287 SISEDCTVAVLDADFSEVFRDL------SHRDFVTGVAWSPLDHSKFTTVG--WDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EEETTSCEEEECTTSCEEEEEC------CCSSCEEEEEECSSSTTEEEEEE--TTSCEEEEECC----
T ss_pred             EEeCCCEEEEEECCCCcEeEEC------CCCCCEEEEEEeCCCCCEEEEEc--CCCeEEEEECCCCCc
Confidence            9999999999999999887665      5788999999998 899999999  669999999976544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.5e-43  Score=331.54  Aligned_cols=286  Identities=14%  Similarity=0.164  Sum_probs=251.5

Q ss_pred             eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      ....+..|..+|++++|+|++.++++|+.|+.|++||..++ +....+..|...|.+++|+|             ++.+|
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~-~~~~~~~~~~~~v~~~~~sp-------------~g~~l  121 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT-NKEHAVTMPCTWVMACAYAP-------------SGCAI  121 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCEEEECT-------------TSSEE
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC-CcceEEecCCCCEEEEEECC-------------CCCEE
Confidence            34567789999999999999999999999999999999885 67778889999999999999             89999


Q ss_pred             EEeeCCCceEEec-C-------CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784          182 VTSSCDHSIRLWW-K-------GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       182 ~s~~~dg~i~vwd-~-------~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      ++|+.|+.+++|+ .       ......+.+|...|.+++|+    +++..|++|+.||+|++||+.++.      ++..
T Consensus       122 asg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~t~s~D~~v~lwd~~~~~------~~~~  191 (354)
T 2pbi_B          122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT----NSDMQILTASGDGTCALWDVESGQ------LLQS  191 (354)
T ss_dssp             EEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC----SSSSEEEEEETTSEEEEEETTTCC------EEEE
T ss_pred             EEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe----CCCCEEEEEeCCCcEEEEeCCCCe------EEEE
Confidence            9999999999997 1       12345667899999999997    788999999999999999999876      5788


Q ss_pred             ccCCCCceeEEEEeec-CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784          254 LYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL  332 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  332 (501)
                      +.+|...|.+++++|. ++++|++|+.||.|++||+++++                                        
T Consensus       192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~----------------------------------------  231 (354)
T 2pbi_B          192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ----------------------------------------  231 (354)
T ss_dssp             EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC----------------------------------------
T ss_pred             EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc----------------------------------------
Confidence            8999999999999875 46899999999999999998764                                        


Q ss_pred             CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc--CcccCeEEEEecCC-eEEEE
Q 010784          333 RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD--GHVGSVTQLHMDPY-KIVTG  408 (501)
Q Consensus       333 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~-~~l~~  408 (501)
                          .+..+.+|...|.+++|+|++.+|++|+.|+ |++||++..+..      ..+.  .+...+.+++|+|+ .++++
T Consensus       232 ----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~------~~~~~~~~~~~~~~~~~s~~g~~l~~  301 (354)
T 2pbi_B          232 ----CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV------AIYSKESIIFGASSVDFSLSGRLLFA  301 (354)
T ss_dssp             ----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE------EEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             ----EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE------EEEcCCCcccceeEEEEeCCCCEEEE
Confidence                2345667899999999999999999999999 999999986543      3333  23457899999999 99999


Q ss_pred             ecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          409 GRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       409 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      |+.|+.|++||+.+++.+..+     .+|...|.+++|+|+|++|++|+  .|+.|++|+
T Consensus       302 g~~d~~i~vwd~~~~~~~~~l-----~~h~~~v~~l~~spdg~~l~sgs--~D~~v~vW~  354 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSRVSIL-----FGHENRVSTLRVSPDGTAFCSGS--WDHTLRVWA  354 (354)
T ss_dssp             EETTSCEEEEETTTCSEEEEE-----CCCSSCEEEEEECTTSSCEEEEE--TTSEEEEEC
T ss_pred             EECCCcEEEEECCCCceEEEE-----ECCCCcEEEEEECCCCCEEEEEc--CCCCEEecC
Confidence            999999999999999988888     57888999999999999999999  669999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.1e-44  Score=332.22  Aligned_cols=285  Identities=13%  Similarity=0.130  Sum_probs=229.8

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccc----------cccceecccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE----------SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE  178 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~----------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~  178 (501)
                      ++..|++++|+|||.++++++ |+++++||....          .........|...|++++|+|             + 
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------d-   93 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG-------------E-   93 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET-------------T-
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC-------------C-
Confidence            345589999999999999887 667777763210          112222334677899999998             5 


Q ss_pred             cEEEEeeCCCceEEec--CCceeee----ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee
Q 010784          179 NVLVTSSCDHSIRLWW--KGSCQRC----FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA  252 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd--~~~~~~~----~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  252 (501)
                      +.|++|+.||+|+|||  +++.+..    +.+|.+.|++++|+    +++++|++|+.||+|++||+.++.      ++.
T Consensus        94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s----pdg~~l~sgs~d~~i~iwd~~~~~------~~~  163 (344)
T 4gqb_B           94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL----SSGTQAVSGSKDICIKVWDLAQQV------VLS  163 (344)
T ss_dssp             TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC----TTSSEEEEEETTSCEEEEETTTTE------EEE
T ss_pred             CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC----CCCCEEEEEeCCCeEEEEECCCCc------EEE
Confidence            5788999999999999  5554433    45899999999997    899999999999999999999876      588


Q ss_pred             eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784          253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL  332 (501)
Q Consensus       253 ~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  332 (501)
                      .+.+|...|.+++|++.+..+|++++.|+.|++||+++++.....                                   
T Consensus       164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-----------------------------------  208 (344)
T 4gqb_B          164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI-----------------------------------  208 (344)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC-----------------------------------
T ss_pred             EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee-----------------------------------
Confidence            899999999999999866678999999999999999987543221                                   


Q ss_pred             CCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEE
Q 010784          333 RTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTG  408 (501)
Q Consensus       333 ~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~  408 (501)
                             ....+...+.+++|+|+ ++++++|+.|+ |++||+++++.+      .++.+|...|++++|+|+  ++|++
T Consensus       209 -------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~------~~~~~h~~~v~~v~fsp~g~~~las  275 (344)
T 4gqb_B          209 -------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV------LSSAVHSQCVTGLVFSPHSVPFLAS  275 (344)
T ss_dssp             -------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC------EEEECCSSCEEEEEECSSSSCCEEE
T ss_pred             -------ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE------EEEcCCCCCEEEEEEccCCCeEEEE
Confidence                   11234667899999995 67899999888 999999987654      889999999999999998  68999


Q ss_pred             ecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc-EEEEeecCCCceEEEeeccCCcc
Q 010784          409 GRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC-RIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       409 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      |+.|++|+|||+.+++++. +     .+|...|++++|+|+++ +|++++  .|+.|++|++.....
T Consensus       276 gs~D~~i~vwd~~~~~~~~-~-----~~H~~~V~~v~~sp~~~~llas~s--~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          276 LSEDCSLAVLDSSLSELFR-S-----QAHRDFVRDATWSPLNHSLLTTVG--WDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EETTSCEEEECTTCCEEEE-E-----CCCSSCEEEEEECSSSTTEEEEEE--TTSCEEEEECCC---
T ss_pred             EeCCCeEEEEECCCCcEEE-E-----cCCCCCEEEEEEeCCCCeEEEEEc--CCCeEEEEECCCCCC
Confidence            9999999999999887653 4     46889999999999986 567888  669999999986543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.9e-43  Score=351.42  Aligned_cols=340  Identities=19%  Similarity=0.288  Sum_probs=291.5

Q ss_pred             eeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784          103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV  182 (501)
Q Consensus       103 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (501)
                      ......+...+.++.+++++.++++|+.|+.+++|+..  .+.+..+.+|...|.+++|+|             ++.+|+
T Consensus       173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~s~-------------dg~~l~  237 (577)
T 2ymu_A          173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSP-------------DGQTIA  237 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECT-------------TSSCEE
T ss_pred             eeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC--CcEEEEEecCCCCEEEEEECC-------------CCCEEE
Confidence            34455567779999999999999999999999999975  477888999999999999999             899999


Q ss_pred             EeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          183 TSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       183 s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                      +++.||.|++|| .++.+..+.+|...|.+++|+    ++++.|++++.|+.|++||....       ....+.+|...|
T Consensus       238 ~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~----~d~~~l~~~~~d~~i~~w~~~~~-------~~~~~~~h~~~v  306 (577)
T 2ymu_A          238 SASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR----PDGQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSV  306 (577)
T ss_dssp             EEETTSCEEEECTTSCEEEEECCCSSCEEEEEEC----TTSSEEEEEETTSCEEEEETTSC-------EEEEECCCSSCE
T ss_pred             EEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEc----CCCCEEEEEeCCCEEEEEeCCCc-------EEEEEecCCCCe
Confidence            999999999999 788889999999999999997    89999999999999999997543       467788999999


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCceE
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQKV  338 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~  338 (501)
                      .+++|+| ++..+++++.|+.|++||.......      ....+...+.++.++++...++++   +.+++||. +++.+
T Consensus       307 ~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~~~------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~  378 (577)
T 2ymu_A          307 WGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQ------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLL  378 (577)
T ss_dssp             EEEEECT-TSSEEEEEETTSCEEEEETTSCEEE------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEE
T ss_pred             EEEEECC-CCCEEEEEeCCCeEEEEeCCCCeeE------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEE
Confidence            9999998 7889999999999999998765321      111345566677777765555443   48999995 66788


Q ss_pred             eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784          339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN  416 (501)
Q Consensus       339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~  416 (501)
                      ..+..|...|.+++|+|++++|++++.|+ |++||.. +      +.+..+.+|...|++++|+|+ +++++++.|+.|+
T Consensus       379 ~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~  451 (577)
T 2ymu_A          379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G------QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK  451 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C------CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence            88899999999999999999999999998 9999954 2      234788899999999999999 8999999999999


Q ss_pred             EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec--------------------cCCccce
Q 010784          417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF--------------------SNATCPV  476 (501)
Q Consensus       417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~--------------------~~~~~~~  476 (501)
                      +||. +++.+..+     .+|...|.+++|+|++++|++++  .|+.|++|+.                    ++++..+
T Consensus       452 ~w~~-~~~~~~~~-----~~~~~~v~~~~~spd~~~las~~--~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  523 (577)
T 2ymu_A          452 LWNR-NGQLLQTL-----TGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI  523 (577)
T ss_dssp             EEET-TSCEEEEE-----ECCSSCEEEEEECTTSCEEEEEE--TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             EEEC-CCCEEEEE-----cCCCCCEEEEEEcCCCCEEEEEe--CCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEE
Confidence            9996 56777777     56788999999999999999999  6699999983                    3456678


Q ss_pred             eecCCCCceeeeccc
Q 010784          477 LKHEVQNDSKFWGPQ  491 (501)
Q Consensus       477 ~s~~~d~~~~~w~~~  491 (501)
                      ++++.|+.+++|+..
T Consensus       524 ~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          524 ASASDDKTVKLWNRN  538 (577)
T ss_dssp             EEEETTSEEEEECTT
T ss_pred             EEEECcCEEEEEeCC
Confidence            899999999999853

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.4e-44  Score=339.72  Aligned_cols=296  Identities=16%  Similarity=0.212  Sum_probs=251.3

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ..+..|..+|++++|+|++.++++|+.|+.|+|||..++ +....+.+|...|.+++|+|             ++++|++
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-~~~~~~~~h~~~v~~~~~s~-------------~g~~las  125 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS-QKTHAIKLHCPWVMECAFAP-------------NGQSVAC  125 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-EEEEEEECCCTTCCCCEECT-------------TSSEEEE
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ccceEEecCCCCEEEEEECC-------------CCCEEEE
Confidence            456778889999999999999999999999999999985 77888999999999999999             8999999


Q ss_pred             eeCCCceEEec-CC--------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          184 SSCDHSIRLWW-KG--------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       184 ~~~dg~i~vwd-~~--------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      |+.|+.|++|| ..        .....+.+|.+.|.++.|+|   ..+..|++|+.|++|++||+.++..      +..+
T Consensus       126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~---~~~~~l~s~s~D~~i~~wd~~~~~~------~~~~  196 (380)
T 3iz6_a          126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP---DQETRLITGSGDQTCVLWDVTTGQR------ISIF  196 (380)
T ss_dssp             CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS---SSSSCEEEECTTSCEEEECTTTCCE------EEEE
T ss_pred             eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEec---CCCCEEEEECCCCcEEEEEcCCCcE------EEEe
Confidence            99999999998 21        23456789999999999972   3456899999999999999998763      4333


Q ss_pred             -----cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784          255 -----YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT  329 (501)
Q Consensus       255 -----~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  329 (501)
                           .+|...|.++.+++.++++|++|+.|+.|++||++...                                     
T Consensus       197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-------------------------------------  239 (380)
T 3iz6_a          197 GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-------------------------------------  239 (380)
T ss_dssp             CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-------------------------------------
T ss_pred             ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-------------------------------------
Confidence                 67999999999987788899999999999999997432                                     


Q ss_pred             EEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC-------cccCeEEEEec
Q 010784          330 IDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG-------HVGSVTQLHMD  401 (501)
Q Consensus       330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~  401 (501)
                            +.+..+.+|.+.|.+++|+|++++|++|+.|+ |++||+++++..      ..+..       +...|++++|+
T Consensus       240 ------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s  307 (380)
T 3iz6_a          240 ------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL------QVYNREPDRNDNELPIVTSVAFS  307 (380)
T ss_dssp             ------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE------EEECCCCSSSCCSSCSCSEEEEC
T ss_pred             ------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE------EEecccccccccccCceEEEEEC
Confidence                  12345677999999999999999999999999 999999987653      33332       23358999999


Q ss_pred             CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          402 PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       402 ~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      |+ +++++|+.||.|++||+.+++.+..+... ..+|...|.+++|+|+|++|++|+  .|+.|++|++....+
T Consensus       308 ~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~sgs--~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL-QNSHEGRISCLGLSSDGSALCTGS--WDKNLKIWAFSGHRK  378 (380)
T ss_dssp             SSSSEEEEECTTSCEEEEETTTCCEEEEECCS-CSSCCCCCCEEEECSSSSEEEEEC--TTSCEEEEECCSSSS
T ss_pred             CCCCEEEEEECCCCEEEEECCCCceEEEEecc-cCCCCCceEEEEECCCCCEEEEee--CCCCEEEEecCCCcc
Confidence            99 99999999999999999988877666322 146888999999999999999999  669999999986543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.7e-43  Score=328.05  Aligned_cols=306  Identities=15%  Similarity=0.211  Sum_probs=245.6

Q ss_pred             EEEecCC-CCceEEeeCCcEEEeecCCeeeEEEEeccccccc--ceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          105 CFYSVAK-PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYY--RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       105 ~~~~~~~-~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      .+..|+. .+.+++|+|+|.+||+|+.|+.|+||+..++...  .....+|.+.|++++|+|             ++++|
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-------------~g~~l   76 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-------------CGNYL   76 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-------------TSSEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-------------CCCEE
Confidence            4445666 7999999999999999999999999999875222  223478999999999999             89999


Q ss_pred             EEeeCCCceEEec--CC--ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          182 VTSSCDHSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       182 ~s~~~dg~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      ++|+.|++|++||  .+  .++..+.+|...|.+++|+    +++++|++|+.|++|++||+.++..   ..++..+.+|
T Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s----p~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~h  149 (345)
T 3fm0_A           77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA----PSGNLLATCSRDKSVWVWEVDEEDE---YECVSVLNSH  149 (345)
T ss_dssp             EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC----TTSSEEEEEETTSCEEEEEECTTSC---EEEEEEECCC
T ss_pred             EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe----CCCCEEEEEECCCeEEEEECCCCCC---eEEEEEecCc
Confidence            9999999999998  33  4577889999999999997    8999999999999999999987642   2245678899


Q ss_pred             CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784          258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  337 (501)
                      ...|.+++|+| ++.+|++|+.|+.|++||.++++.                                          ..
T Consensus       150 ~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~------------------------------------------~~  186 (345)
T 3fm0_A          150 TQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDW------------------------------------------VC  186 (345)
T ss_dssp             CSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEE------------------------------------------EE
T ss_pred             CCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCE------------------------------------------EE
Confidence            99999999998 788999999999999999876531                                          12


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCC---------CCCcccccC-cccCeEEEEecCC-eE
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVK---------PQPMAELDG-HVGSVTQLHMDPY-KI  405 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~---------~~~~~~~~~-h~~~v~~l~~~~~-~~  405 (501)
                      ...+.+|...|.+++|+|++++|++|+.|+ |++||.........         ..++..+.+ |...|++++|+|+ ..
T Consensus       187 ~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  266 (345)
T 3fm0_A          187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA  266 (345)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC
T ss_pred             EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE
Confidence            345678999999999999999999999999 99999754332100         011233443 7889999999999 88


Q ss_pred             EEEecCCCcEEEEeCCCcccc----cccccCCCCCCCcceeeeEeeccc-cEEEEeecCCCceEEEeeccCCccc
Q 010784          406 VTGGRDDLRINIWETDTGMLA----NSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       406 l~~gs~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      +++++.|+.|++|+...+...    ..+..+...+|...|++++|+|++ .+|++|+  .||.|++|++.....+
T Consensus       267 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s--~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          267 LATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS--DDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             EEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE--TTSCEEEEEECC----
T ss_pred             EEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC--CCCcEEEEEecCCCCc
Confidence            888889999999998765321    122222235788999999999998 4999999  6699999999887654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.9e-43  Score=322.47  Aligned_cols=292  Identities=16%  Similarity=0.256  Sum_probs=248.3

Q ss_pred             eeEEEecCCCCceEEeeCCc-EEEeecCCeeeEEEEecccc----cccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784          103 DVCFYSVAKPHDHILLDNND-IFSTQGSSIQNIKIDNFLSE----SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       103 ~~~~~~~~~~i~~~~~~~~~-~~~~~g~~d~~i~vw~~~~~----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      ...+..|..+|+++++++++ .++++|+.|+.|++|++...    ...+..+.+|...|++++|+|             +
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-------------d   76 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-------------D   76 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-------------T
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-------------C
Confidence            34567788999999999865 89999999999999998743    235678899999999999999             8


Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      +++|++|+.||+|++||  +++.+..+.+|...|.+++|+    +++.+|++|+.|++|++||++..       .+..+.
T Consensus        77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~s~D~~i~vwd~~~~-------~~~~~~  145 (319)
T 3frx_A           77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID----KKASMIISGSRDKTIKVWTIKGQ-------CLATLL  145 (319)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC----TTSCEEEEEETTSCEEEEETTSC-------EEEEEC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc----CCCCEEEEEeCCCeEEEEECCCC-------eEEEEe
Confidence            99999999999999999  788889999999999999997    89999999999999999999753       467888


Q ss_pred             CCCCceeEEEEeec-----CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEE
Q 010784          256 GHEKPIKLMSVAGH-----KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI  330 (501)
Q Consensus       256 ~~~~~v~~l~~~~~-----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  330 (501)
                      +|...|.++.+.|.     ++..+++++.|+.|++||+++.+                                      
T Consensus       146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--------------------------------------  187 (319)
T 3frx_A          146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--------------------------------------  187 (319)
T ss_dssp             CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--------------------------------------
T ss_pred             ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--------------------------------------
Confidence            99999999999874     34489999999999999998753                                      


Q ss_pred             EcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE
Q 010784          331 DLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG  408 (501)
Q Consensus       331 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~  408 (501)
                            ....+.+|...|.+++|+|++++|++|+.|+ |++||+.+++..      ..+.. ...|.+++|+|+ .++++
T Consensus       188 ------~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~------~~~~~-~~~v~~~~~sp~~~~la~  254 (319)
T 3frx_A          188 ------IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM------YTLSA-QDEVFSLAFSPNRYWLAA  254 (319)
T ss_dssp             ------EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE------EEEEC-CSCEEEEEECSSSSEEEE
T ss_pred             ------hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------EEecC-CCcEEEEEEcCCCCEEEE
Confidence                  2345667999999999999999999999998 999999987654      66654 468999999999 88888


Q ss_pred             ecCCCcEEEEeCCCcccccccccCC---CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          409 GRDDLRINIWETDTGMLANSLLCNY---PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       409 gs~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      ++ ++.+++|++..+..+..+..+.   ...+...+.+++|+|||++|++|+  .||.|++|++.+.
T Consensus       255 ~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~--~Dg~i~vWd~~t~  318 (319)
T 3frx_A          255 AT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY--TDNVIRVWQVMTA  318 (319)
T ss_dssp             EE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE--TTSCEEEEEEEEC
T ss_pred             Ec-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee--cCceEEEEEEeec
Confidence            74 5569999999877766653221   123466789999999999999999  6699999998753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2e-42  Score=319.00  Aligned_cols=292  Identities=20%  Similarity=0.312  Sum_probs=253.4

Q ss_pred             CCeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784          100 DPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN  179 (501)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~  179 (501)
                      ......+..|..+|++++|+|++.++++|+.|+.+++|+..++ +....+.+|...|.+++|+|             +++
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~-------------~~~   78 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSS-------------DSN   78 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-------------TSS
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-ccchhhccCCCceEEEEEcC-------------CCC
Confidence            3445667788899999999999999999999999999999885 77888999999999999999             899


Q ss_pred             EEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          180 VLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       180 ~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      +|++|+.||.|++||  +++.+..+.+|...|.+++|+    +++++|++|+.||.|++||+.++.      ....+..|
T Consensus        79 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~  148 (312)
T 4ery_A           79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN----PQSNLIVSGSFDESVRIWDVKTGK------CLKTLPAH  148 (312)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----SSSSEEEEEETTSCEEEEETTTCC------EEEEECCC
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----CCCCEEEEEeCCCcEEEEECCCCE------EEEEecCC
Confidence            999999999999999  778888999999999999997    889999999999999999999876      47788899


Q ss_pred             CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784          258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  337 (501)
                      ..+|.+++|+| ++.+|++++.||.|++||+++++.+..                                         
T Consensus       149 ~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~-----------------------------------------  186 (312)
T 4ery_A          149 SDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKT-----------------------------------------  186 (312)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEE-----------------------------------------
T ss_pred             CCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeE-----------------------------------------
Confidence            99999999997 788999999999999999987743211                                         


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEE--EEec-CC-eEEEEecCC
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQ--LHMD-PY-KIVTGGRDD  412 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~--l~~~-~~-~~l~~gs~d  412 (501)
                        ....+...+..++|+|++++|++++.|+ |++||+++++..      ..+.+|...+.+  ..++ ++ .++++|+.|
T Consensus       187 --~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d  258 (312)
T 4ery_A          187 --LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL------KTYTGHKNEKYCIFANFSVTGGKWIVSGSED  258 (312)
T ss_dssp             --ECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE------EEECSSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred             --EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE------EEEEecCCceEEEEEEEEeCCCcEEEEECCC
Confidence              1123567789999999999999999888 999999987654      677777654433  2333 44 889999999


Q ss_pred             CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          413 LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       413 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      |.|++||+.+++.+..+     .+|...|.+++|+|++++|++++.++|+.|++|+..
T Consensus       259 g~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          259 NLVYIWNLQTKEIVQKL-----QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SCEEEEETTTCCEEEEE-----CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             CEEEEEECCCchhhhhh-----hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999999998     577889999999999999999986567999999864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-42  Score=331.58  Aligned_cols=266  Identities=25%  Similarity=0.382  Sum_probs=238.2

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      .....+.+|.++|++++|+|             ++.+|++|+.||+|+|||  +++....+.+|...|.+++|+    ++
T Consensus        99 ~~~~~l~gh~~~V~~~~~~p-------------~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~----~~  161 (410)
T 1vyh_C           99 PEKYALSGHRSPVTRVIFHP-------------VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD----HS  161 (410)
T ss_dssp             SCSCEEECCSSCEEEEEECS-------------SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEEC----TT
T ss_pred             CceEeecccCCcEEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEc----CC
Confidence            34567889999999999999             889999999999999999  778889999999999999997    88


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      +++|++|+.||+|++||+.+..      ++..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++.         
T Consensus       162 ~~~l~sgs~D~~i~iwd~~~~~------~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~---------  225 (410)
T 1vyh_C          162 GKLLASCSADMTIKLWDFQGFE------CIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGY---------  225 (410)
T ss_dssp             SSEEEEEETTSCCCEEETTSSC------EEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCC---------
T ss_pred             CCEEEEEeCCCeEEEEeCCCCc------eeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCc---------
Confidence            9999999999999999998876      5788899999999999998 78899999999999999998763         


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV  380 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  380 (501)
                                                         .+..+.+|...|.++.++|++.++++|+.|+ |++||+++++.. 
T Consensus       226 -----------------------------------~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~-  269 (410)
T 1vyh_C          226 -----------------------------------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK-  269 (410)
T ss_dssp             -----------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-
T ss_pred             -----------------------------------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee-
Confidence                                               2345667899999999999999999999999 999999986654 


Q ss_pred             CCCCcccccCcccCeEEEEecCC---------------------eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCc
Q 010784          381 KPQPMAELDGHVGSVTQLHMDPY---------------------KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADI  439 (501)
Q Consensus       381 ~~~~~~~~~~h~~~v~~l~~~~~---------------------~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  439 (501)
                           ..+.+|...|.+++|+|+                     .++++|+.|+.|++||+.+++++.++     .+|..
T Consensus       270 -----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~-----~~h~~  339 (410)
T 1vyh_C          270 -----AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-----VGHDN  339 (410)
T ss_dssp             -----EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-----ECCSS
T ss_pred             -----eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE-----ECCCC
Confidence                 788899999999999984                     47889999999999999999999998     56788


Q ss_pred             ceeeeEeeccccEEEEeecCCCceEEEeeccC---------------------CccceeecCCCCceeeecc
Q 010784          440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSN---------------------ATCPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~---------------------~~~~~~s~~~d~~~~~w~~  490 (501)
                      .|.+++|+|+|++|++|+  .||.|++||+..                     ....+++++.|+++++|++
T Consensus       340 ~v~~v~~~~~g~~l~s~s--~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCA--DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             CEEEEEECSSSSCEEEEE--TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             cEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999  669999999653                     3345789999999999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.5e-42  Score=320.68  Aligned_cols=296  Identities=19%  Similarity=0.285  Sum_probs=241.6

Q ss_pred             eeEEEecCCCCceEEe-----eC-CcEEEeecCCeeeEEEEecccc------cccceecccCCcceeEEEeeccCcCccc
Q 010784          103 DVCFYSVAKPHDHILL-----DN-NDIFSTQGSSIQNIKIDNFLSE------SYYRATLSDHKARITCMRLFPLHETSLF  170 (501)
Q Consensus       103 ~~~~~~~~~~i~~~~~-----~~-~~~~~~~g~~d~~i~vw~~~~~------~~~~~~~~~h~~~V~~~~~~~~~~~~~~  170 (501)
                      ...+..|...|++++|     ++ ++.++++|+.|++|++||+.++      ......+.+|...|++++|+|       
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-------   86 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-------   86 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-------
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-------
Confidence            3467778899999999     66 9999999999999999998743      245677899999999999999       


Q ss_pred             ccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784          171 RSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       171 ~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  248 (501)
                            ++.++++|+.||+|++||  +++.+..+.+|...|.+++|+    +++++|++|+.|+.|++||+.....    
T Consensus        87 ------~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s----p~~~~l~s~~~d~~i~~wd~~~~~~----  152 (343)
T 2xzm_R           87 ------ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS----PDNRQILSAGAEREIKLWNILGECK----  152 (343)
T ss_dssp             ------STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC----SSTTEEEEEETTSCEEEEESSSCEE----
T ss_pred             ------CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC----CCCCEEEEEcCCCEEEEEeccCCce----
Confidence                  889999999999999999  778888999999999999997    8999999999999999999974321    


Q ss_pred             cceeeccCCCCceeEEEEeecC---------CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784          249 ALKATLYGHEKPIKLMSVAGHK---------SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML  319 (501)
Q Consensus       249 ~~~~~~~~~~~~v~~l~~~~~~---------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (501)
                      .......+|...|.+++|+|..         +.+|++++.||.|++||...                             
T Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------------------------  203 (343)
T 2xzm_R          153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----------------------------  203 (343)
T ss_dssp             EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----------------------------
T ss_pred             eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----------------------------
Confidence            0112234789999999999843         26899999999999999432                             


Q ss_pred             EEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784          320 YIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL  398 (501)
Q Consensus       320 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  398 (501)
                                      +....+.+|...|.+++|+|++++|++|+.|+ |++||+......     ...+ .+...|.++
T Consensus       204 ----------------~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~-----~~~~-~~~~~v~~v  261 (343)
T 2xzm_R          204 ----------------QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP-----QREF-DAGSTINQI  261 (343)
T ss_dssp             ----------------EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC-----SEEE-ECSSCEEEE
T ss_pred             ----------------ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc-----ceee-cCCCcEEEE
Confidence                            12245667899999999999999999999998 999999654322     2333 245679999


Q ss_pred             EecCC-eEEEEecCCCcEEEEeCCCccccc--ccccC------CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          399 HMDPY-KIVTGGRDDLRINIWETDTGMLAN--SLLCN------YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~--~~~~~------~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      +|+|+ .++++| .|+.|++||+.+++...  .+...      ...+|...+.+++|+|+|++|++|+  .||.|++|++
T Consensus       262 ~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~--~Dg~v~~w~~  338 (343)
T 2xzm_R          262 AFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF--TDGVIRTFSF  338 (343)
T ss_dssp             EECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE--TTSEEEEEEE
T ss_pred             EECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec--CCceEEEEEE
Confidence            99999 888775 68889999998876654  33211      0125778899999999999999999  6699999998


Q ss_pred             cCCc
Q 010784          470 SNAT  473 (501)
Q Consensus       470 ~~~~  473 (501)
                      .++.
T Consensus       339 ~~g~  342 (343)
T 2xzm_R          339 ETSA  342 (343)
T ss_dssp             EEEE
T ss_pred             EccC
Confidence            7643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-42  Score=319.92  Aligned_cols=298  Identities=17%  Similarity=0.205  Sum_probs=233.3

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceec-cc-CCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATL-SD-HKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~-~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      ..+..|..+|.+++++++  ++|+|+.|+.|++|++..+. .....+ .+ |.+.|++++|+|             ++++
T Consensus         8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-------------~~~~   72 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-------------HTSL   72 (330)
T ss_dssp             EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-------------TSSE
T ss_pred             eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-------------CCCE
Confidence            456678889999999998  99999999999999998642 344455 44 999999999999             8899


Q ss_pred             EEEeeCCCceEEecC---------CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce
Q 010784          181 LVTSSCDHSIRLWWK---------GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK  251 (501)
Q Consensus       181 l~s~~~dg~i~vwd~---------~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  251 (501)
                      |++|+.|++|+|||.         ...+..+.+|...|.+++|+    +++++|++|+.|++|++||+.....  ...++
T Consensus        73 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s----p~g~~las~s~D~~v~iwd~~~~~~--~~~~~  146 (330)
T 2hes_X           73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS----NDGYYLATCSRDKSVWIWETDESGE--EYECI  146 (330)
T ss_dssp             EEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEEC----TTSCEEEEEETTSCEEEEECCTTCC--CCEEE
T ss_pred             EEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC----CCCCEEEEEeCCCEEEEEeccCCCC--CeEEE
Confidence            999999999999982         23566788999999999997    8999999999999999999954321  11246


Q ss_pred             eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784          252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID  331 (501)
Q Consensus       252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  331 (501)
                      ..+.+|...|.+++|+| ++.+|++|+.|+.|++||..++..                                      
T Consensus       147 ~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~--------------------------------------  187 (330)
T 2hes_X          147 SVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW--------------------------------------  187 (330)
T ss_dssp             EEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEE--------------------------------------
T ss_pred             EEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCe--------------------------------------
Confidence            67889999999999998 788999999999999999765421                                      


Q ss_pred             cCCCceEeeeccCCCcEEEEEEcCC--CcEEEEEcCCc-EEEEecCCCCCCC--CCCCcccccC-cccCeEEEEecCCeE
Q 010784          332 LRTMQKVMTPAICKPILHSFSIMPS--KSLICTGGIGK-AMTWDIRRSQDAV--KPQPMAELDG-HVGSVTQLHMDPYKI  405 (501)
Q Consensus       332 ~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~d~-i~iwd~~~~~~~~--~~~~~~~~~~-h~~~v~~l~~~~~~~  405 (501)
                          +.+..+.+|...|.+++|+|+  +.+|++|+.|+ |++||++......  .......+.+ |...|++++|+++.+
T Consensus       188 ----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~  263 (330)
T 2hes_X          188 ----ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL  263 (330)
T ss_dssp             ----EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSC
T ss_pred             ----eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCE
Confidence                234567789999999999998  77899999998 9999997653210  0012234444 889999999998877


Q ss_pred             EEEecCCCcEEEEeCCCcc--cccccccCCCCCCCc-ceeeeEeec--cccEEEEeecCCCceEEEeeccC
Q 010784          406 VTGGRDDLRINIWETDTGM--LANSLLCNYPEEADI-STGCSAMAV--SGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       406 l~~gs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~-~v~~~~~s~--~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      +++++.||.|++||..+++  ......    .+|.. .|.+++|+|  ++++|++|+  .||.|++|++..
T Consensus       264 l~s~~~dg~v~iw~~~~~~~~~~~~~~----~~h~~~~v~~v~~~~~~~~~~las~s--~Dg~v~~W~~~~  328 (330)
T 2hes_X          264 IASVGADGVLAVYEEVDGEWKVFAKRA----LCHGVYEINVVKWLELNGKTILATGG--DDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEES----CTTTTSCEEEEEEC-----CCEEEEE--TTSEEEEEEC--
T ss_pred             EEEEeCCCEEEEEEcCCCceEEEeccc----cccccceEEEEEEecCCCceEEEEec--CCCcEEEEEecc
Confidence            7777899999999998763  232221    34555 899999999  789999999  669999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-41  Score=323.39  Aligned_cols=296  Identities=20%  Similarity=0.243  Sum_probs=242.3

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc------------------ceeEEEeeccCcCc
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA------------------RITCMRLFPLHETS  168 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~------------------~V~~~~~~~~~~~~  168 (501)
                      ..|...|++++|+|+|.++|+|+ ++.+++|++.++ +.+..+.+|..                  .|++++|+|     
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-----  133 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-----  133 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECT-----
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC-CEEEEecCccccccccccccccccCCCceeEEEEEECC-----
Confidence            35888899999999999999987 689999999885 66666665542                  489999998     


Q ss_pred             ccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc
Q 010784          169 LFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG  246 (501)
Q Consensus       169 ~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  246 (501)
                              ++++|++|+.||+|++||  .++.+..+.+|...|.+++|+    +++++|++|+.|++|++||+.++..  
T Consensus       134 --------dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~----p~~~~l~s~s~d~~v~iwd~~~~~~--  199 (393)
T 1erj_A          134 --------DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF----PSGDKLVSGSGDRTVRIWDLRTGQC--  199 (393)
T ss_dssp             --------TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----TTSSEEEEEETTSEEEEEETTTTEE--
T ss_pred             --------CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEc----CCCCEEEEecCCCcEEEEECCCCee--
Confidence                    899999999999999999  677888899999999999997    8999999999999999999998753  


Q ss_pred             cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784          247 QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS  326 (501)
Q Consensus       247 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (501)
                          ...+. +...+.+++++|.++.+|++|+.|+.|++||+++++.+.....                           
T Consensus       200 ----~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~---------------------------  247 (393)
T 1erj_A          200 ----SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS---------------------------  247 (393)
T ss_dssp             ----EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------------------------
T ss_pred             ----EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc---------------------------
Confidence                44443 5678999999987889999999999999999988754321100                           


Q ss_pred             EEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC------CCCCcccccCcccCeEEEE
Q 010784          327 VVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV------KPQPMAELDGHVGSVTQLH  399 (501)
Q Consensus       327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~------~~~~~~~~~~h~~~v~~l~  399 (501)
                                ......+|...|.+++|+|++++|++|+.|+ |++||+++.....      ...+...+.+|...|.+++
T Consensus       248 ----------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  317 (393)
T 1erj_A          248 ----------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA  317 (393)
T ss_dssp             ---------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred             ----------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEE
Confidence                      0012246889999999999999999999998 9999998753210      0223456778999999999


Q ss_pred             ecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec------cccEEEEeecCCCceEEEeeccCC
Q 010784          400 MDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV------SGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       400 ~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      ++|+ .++++|+.||.|++||+.+++.+..+     .+|...|.+++|++      ++++|++|+  .||.|++|++...
T Consensus       318 ~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l-----~~h~~~v~~v~~~~~~~~~p~~~~l~sgs--~Dg~i~iW~~~~~  390 (393)
T 1erj_A          318 TTQNDEYILSGSKDRGVLFWDKKSGNPLLML-----QGHRNSVISVAVANGSSLGPEYNVFATGS--GDCKARIWKYKKI  390 (393)
T ss_dssp             ECGGGCEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECSSCTTCTTCEEEEEEE--TTSEEEEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-----CCCCCCEEEEEecCCcCcCCCCCEEEEEC--CCCcEEECccccc
Confidence            9999 89999999999999999999999888     56788999999876      789999999  6699999998643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.2e-41  Score=313.60  Aligned_cols=270  Identities=19%  Similarity=0.251  Sum_probs=234.4

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      +...++.+|.+.|++++|+|             ++++|++|+.||+|++||  ++..+..+..|...|.+++|+    ++
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~-------------d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s----~~  108 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGT-------------DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA----PS  108 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECT-------------TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEEC----TT
T ss_pred             hhheeecCCCCceEEEEECC-------------CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEEC----CC
Confidence            55678899999999999999             899999999999999999  777888899999999999997    89


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      +++|++|+.|+.|++|++.+...  .......+.+|...|.++.|++ ++ .+++++.|+.|++||+++++         
T Consensus       109 ~~~l~s~~~d~~v~iw~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~---------  175 (340)
T 1got_B          109 GNYVACGGLDNICSIYNLKTREG--NVRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQ---------  175 (340)
T ss_dssp             SSEEEEEETTCEEEEEETTTCSB--SCEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTE---------
T ss_pred             CCEEEEEeCCCeEEEEECccCCC--cceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCc---------
Confidence            99999999999999999987542  1224566789999999999986 44 58999999999999998763         


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV  380 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  380 (501)
                                                         .+..+.+|.+.|.+++|+|+++++++|+.|+ |++||+++++.. 
T Consensus       176 -----------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~-  219 (340)
T 1got_B          176 -----------------------------------QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-  219 (340)
T ss_dssp             -----------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE-
T ss_pred             -----------------------------------EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeE-
Confidence                                               3345677999999999999999999999998 999999986554 


Q ss_pred             CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC
Q 010784          381 KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG  459 (501)
Q Consensus       381 ~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  459 (501)
                           ..+.+|...|++++|+|+ .++++|+.||.|++||+++++.+..+..   ..+...|.+++|+|+|++|++|+  
T Consensus       220 -----~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~g~--  289 (340)
T 1got_B          220 -----QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGY--  289 (340)
T ss_dssp             -----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEE--
T ss_pred             -----EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEEEEC--
Confidence                 788999999999999999 9999999999999999999888777632   22345799999999999999999  


Q ss_pred             CCceEEEeecc---------------------CCccceeecCCCCceeeec
Q 010784          460 EPGLLQFRDFS---------------------NATCPVLKHEVQNDSKFWG  489 (501)
Q Consensus       460 ~~g~i~~w~~~---------------------~~~~~~~s~~~d~~~~~w~  489 (501)
                      .||.|++||+.                     +++..+++++.|+.+++|+
T Consensus       290 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            66999999953                     3455678999999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-41  Score=313.41  Aligned_cols=270  Identities=17%  Similarity=0.220  Sum_probs=231.8

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGD  219 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~  219 (501)
                      ...+.+++|.+.|++++|+|++         .+++.+|+||+.|++|+|||  .+.  ....+.+|...|.+++|+    
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~---------~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~----   89 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNK---------KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS----   89 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC----------------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC----
T ss_pred             heeeecccCCCcEEEEEEecCC---------CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC----
Confidence            4456678999999999999832         11467999999999999998  333  345688999999999997    


Q ss_pred             CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784          220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                      +++.++++|+.|++|++||+.++.      .+..+..|...+.+++|+| ++++|++|+.||.|++||+++++.      
T Consensus        90 ~~~~~l~s~s~D~~i~lWd~~~~~------~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~------  156 (321)
T 3ow8_A           90 HTLPIAASSSLDAHIRLWDLENGK------QIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKK------  156 (321)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTE------EEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSE------
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCC------EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCce------
Confidence            789999999999999999999876      4777888999999999998 788999999999999999987642      


Q ss_pred             ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784          300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD  378 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~  378 (501)
                                                            ...+..|...|.+++|+|++++|++|+.|+ |++||+++++.
T Consensus       157 --------------------------------------~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~  198 (321)
T 3ow8_A          157 --------------------------------------EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL  198 (321)
T ss_dssp             --------------------------------------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             --------------------------------------eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence                                                  234455778899999999999999999999 99999998765


Q ss_pred             CCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          379 AVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       379 ~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      +      ..+.+|...|++++|+|+ ++|++|+.||.|++||+++++.+.++     .+|...|.+++|+|++++|++++
T Consensus       199 ~------~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~sp~~~~l~s~s  267 (321)
T 3ow8_A          199 L------HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-----SGHASWVLNVAFCPDDTHFVSSS  267 (321)
T ss_dssp             E------EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             E------EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE-----cCCCCceEEEEECCCCCEEEEEe
Confidence            4      888999999999999999 99999999999999999999998888     57788999999999999999999


Q ss_pred             cCCCceEEEeeccC---------------------CccceeecCCCCceeeecc
Q 010784          458 YGEPGLLQFRDFSN---------------------ATCPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       458 ~d~~g~i~~w~~~~---------------------~~~~~~s~~~d~~~~~w~~  490 (501)
                        .|+.|++||+..                     .+..+++++.|+.+++|+.
T Consensus       268 --~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          268 --SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             --TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             --CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence              669999999643                     3456789999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-42  Score=329.72  Aligned_cols=335  Identities=12%  Similarity=0.158  Sum_probs=268.4

Q ss_pred             CCceEEeeCCcE-EEeec----------CCeeeEEEEecccccc--cceecccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784          112 PHDHILLDNNDI-FSTQG----------SSIQNIKIDNFLSESY--YRATLSDHKARITCMRLFPLHETSLFRSEPQRTE  178 (501)
Q Consensus       112 ~i~~~~~~~~~~-~~~~g----------~~d~~i~vw~~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~  178 (501)
                      .+.+++|+|++. ++++|          +.|+.|++|++.++..  .+..+ .|...|++++|+|             ++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~-------------~~   79 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSH-------------NN   79 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECS-------------SS
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECC-------------CC
Confidence            589999999987 99999          8899999999987532  33333 6899999999999             89


Q ss_pred             cEEEEeeCCCceEEec--C----CceeeeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccc---cc
Q 010784          179 NVLVTSSCDHSIRLWW--K----GSCQRCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRG---QQ  248 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd--~----~~~~~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~---~~  248 (501)
                      ++|++|+.||.|++||  .    ...+..+.+|...|.+++|+    ++ +++|++|+.||.|++||+.++....   ..
T Consensus        80 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  155 (416)
T 2pm9_A           80 KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN----AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP  155 (416)
T ss_dssp             SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC----SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred             CeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEc----CCCCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence            9999999999999999  2    24778889999999999997    66 8899999999999999999875110   00


Q ss_pred             cceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-ecCCCceeeecCCCe---EEEEeC
Q 010784          249 ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGVPVDMKCHESM---LYIASG  324 (501)
Q Consensus       249 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~  324 (501)
                      ........|...|.+++|+|.++.+|++++.||.|++||+++++.+......... .....+.++.++++.   ++.+..
T Consensus       156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  235 (416)
T 2pm9_A          156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG  235 (416)
T ss_dssp             BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred             cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence            1123356799999999999855889999999999999999988654433221100 115567778887763   333443


Q ss_pred             -C---cEEEEEcCCC-ceEeeec-cCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeE
Q 010784          325 -S---SVVTIDLRTM-QKVMTPA-ICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVT  396 (501)
Q Consensus       325 -~---~i~~~d~~~~-~~~~~~~-~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  396 (501)
                       +   .|++||++++ +.+..+. +|...|.+++|+| ++.+|++++.|+ |++||+++++.+      ..+.+|...|+
T Consensus       236 d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~------~~~~~~~~~v~  309 (416)
T 2pm9_A          236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL------SQFPARGNWCF  309 (416)
T ss_dssp             CSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE------EEEECSSSCCC
T ss_pred             CCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc------eeecCCCCceE
Confidence             3   8999999987 5667777 8999999999999 899999999888 999999986554      88889999999


Q ss_pred             EEEecCC--eEEEEecCCCcEEEEeCCCccccccccc------------------------------CCCCCCCcceeee
Q 010784          397 QLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLC------------------------------NYPEEADISTGCS  444 (501)
Q Consensus       397 ~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~~~~~~v~~~  444 (501)
                      +++|+|+  .++++++.||.|++||+.+++.......                              ..+..+...+.++
T Consensus       310 ~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (416)
T 2pm9_A          310 KTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAA  389 (416)
T ss_dssp             CEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCC
T ss_pred             EEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccce
Confidence            9999998  6999999999999999988765433211                              1112256778899


Q ss_pred             EeeccccEEEEeecCCCceEEEeeccCC
Q 010784          445 AMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       445 ~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      +|+|+|++|++++  .|+.|++|++.++
T Consensus       390 ~~s~dg~~la~~~--~d~~v~~w~~~~~  415 (416)
T 2pm9_A          390 HWAFGGKLVQITP--DGKGVSITNPKIS  415 (416)
T ss_dssp             EEETTTEEECBCT--TSSCBCCBCCCCC
T ss_pred             EEeeCCeEEEEeC--CCCeEEEEEeccC
Confidence            9999999999998  6699999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.5e-40  Score=336.06  Aligned_cols=363  Identities=10%  Similarity=0.053  Sum_probs=282.5

Q ss_pred             eeEEEecCCC-CceEEeeC--CcEEEeecCCeeeEEEEecccc-------cccceecccCCcceeEEEeeccCc------
Q 010784          103 DVCFYSVAKP-HDHILLDN--NDIFSTQGSSIQNIKIDNFLSE-------SYYRATLSDHKARITCMRLFPLHE------  166 (501)
Q Consensus       103 ~~~~~~~~~~-i~~~~~~~--~~~~~~~g~~d~~i~vw~~~~~-------~~~~~~~~~h~~~V~~~~~~~~~~------  166 (501)
                      ...+..|... |++++|+|  ++.++++|+.|+.|++||+.++       .+....+.+|...|.+++|+|++.      
T Consensus        56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  135 (615)
T 1pgu_A           56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  135 (615)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence            3556678888 99999999  9999999999999999999743       367778889999999999999764      


Q ss_pred             -------------------------CcccccCCCCcCc-EEEEeeCCCceEEec--CCceeeeccCCCC---ceEEEEee
Q 010784          167 -------------------------TSLFRSEPQRTEN-VLVTSSCDHSIRLWW--KGSCQRCFKGHNG---PVSTLSDK  215 (501)
Q Consensus       167 -------------------------~~~~~~~~~~~~~-~l~s~~~dg~i~vwd--~~~~~~~~~~h~~---~v~~l~~s  215 (501)
                                               ..+.++.|+|++. ++++++.||.|++||  .++.+..+.+|..   .|.+++|+
T Consensus       136 ~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  215 (615)
T 1pgu_A          136 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS  215 (615)
T ss_dssp             CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred             cCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC
Confidence                                     2355667788887 899999999999999  7778888999999   99999997


Q ss_pred             ecCCCC-CCEEEEeeCCCcEEEEeccCCCccccccceeec-c---CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC
Q 010784          216 LLGDGS-GKILASGGEDATVRLWSLSSSGKRGQQALKATL-Y---GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST  290 (501)
Q Consensus       216 ~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~---~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~  290 (501)
                          ++ +++|++|+.||.|++||+.+++      .+..+ .   .|...|.+++|+  ++.+|++++.|+.|++||+++
T Consensus       216 ----~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          216 ----PDSGEFVITVGSDRKISCFDGKSGE------FLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             ----STTCCEEEEEETTCCEEEEETTTCC------EEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTT
T ss_pred             ----CCCCCEEEEEeCCCeEEEEECCCCC------EeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCC
Confidence                78 9999999999999999999876      36666 5   899999999998  778999999999999999998


Q ss_pred             CccccceecccceecCCCceeeec-CCCeEEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC------------
Q 010784          291 SSAVRSSCCVGMTSVPGVPVDMKC-HESMLYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS------------  356 (501)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~------------  356 (501)
                      ++.+....... ......+..+.+ ....++.+. ++.+++||+++++.+..+.+|...|.+++| |+            
T Consensus       284 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~  361 (615)
T 1pgu_A          284 SKCVQKWTLDK-QQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIME  361 (615)
T ss_dssp             TEEEEEEECCT-TCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEE
T ss_pred             CcEEEEEcCCC-CcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEE
Confidence            86554332211 011122333333 233333333 347888888877777776666555555554 33            


Q ss_pred             ---------------------CcEEEEEcCCc-EEEEecC----------------------------------------
Q 010784          357 ---------------------KSLICTGGIGK-AMTWDIR----------------------------------------  374 (501)
Q Consensus       357 ---------------------~~~l~~~~~d~-i~iwd~~----------------------------------------  374 (501)
                                           +..+++++.++ |++||+.                                        
T Consensus       362 w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (615)
T 1pgu_A          362 WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK  441 (615)
T ss_dssp             TTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence                                 44444444444 5555443                                        


Q ss_pred             ----------------------------------CCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEe
Q 010784          375 ----------------------------------RSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWE  419 (501)
Q Consensus       375 ----------------------------------~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd  419 (501)
                                                        +++..    . ..+.+|...|++++|+|+ +++++++.||.|++||
T Consensus       442 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~----~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  516 (615)
T 1pgu_A          442 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS----F-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYD  516 (615)
T ss_dssp             EEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEE----E-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccc----c-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEee
Confidence                                              22110    0 456678999999999999 9999999999999999


Q ss_pred             CCCcccccccccCCCCC-CCcceeeeEeec----------cccEEEEeecCCCceEEEeeccCC----------------
Q 010784          420 TDTGMLANSLLCNYPEE-ADISTGCSAMAV----------SGCRIVTASYGEPGLLQFRDFSNA----------------  472 (501)
Q Consensus       420 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~----------~g~~l~s~~~d~~g~i~~w~~~~~----------------  472 (501)
                      +.+++.+..+     .+ |...|++++|+|          ++++|++++  .||.|++|++..+                
T Consensus       517 ~~~~~~~~~~-----~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~h~~~v~~  589 (615)
T 1pgu_A          517 LQSREVKTSR-----WAFRTSKINAISWKPAEKGANEEEIEEDLVATGS--LDTNIFIYSVKRPMKIIKALNAHKDGVNN  589 (615)
T ss_dssp             TTTTEEEECC-----SCCCSSCEEEEEECCCC------CCSCCEEEEEE--TTSCEEEEESSCTTCCEEETTSSTTCEEE
T ss_pred             CCCCcceeEe-----ecCCCCceeEEEEcCccccccccccCCCEEEEEc--CCCcEEEEECCCCceechhhhcCccceEE
Confidence            9999998888     34 788999999999          999999999  6699999997654                


Q ss_pred             ------ccceeecCCCCceeeecccC
Q 010784          473 ------TCPVLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       473 ------~~~~~s~~~d~~~~~w~~~~  492 (501)
                            +. +++++.|+.+++|+++.
T Consensus       590 l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          590 LLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EEEcCCCC-eEEecCCceEEEEeeec
Confidence                  23 77899999999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-41  Score=325.50  Aligned_cols=322  Identities=12%  Similarity=0.041  Sum_probs=267.0

Q ss_pred             EEEecCCCCceEEeeCCcE-EEeecCCeeeEEEEec----ccccc-----cceeccc----------CCcceeEEEeecc
Q 010784          105 CFYSVAKPHDHILLDNNDI-FSTQGSSIQNIKIDNF----LSESY-----YRATLSD----------HKARITCMRLFPL  164 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~----~~~~~-----~~~~~~~----------h~~~V~~~~~~~~  164 (501)
                      ....+..+|++++|+|++. ++|+|+.|+.|++|++    .++..     ....+..          |.+.|++++|+| 
T Consensus        40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-  118 (425)
T 1r5m_A           40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-  118 (425)
T ss_dssp             EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-
T ss_pred             eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-
Confidence            3444567899999999999 9999999999999999    76531     3334433          788999999999 


Q ss_pred             CcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCC
Q 010784          165 HETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG  243 (501)
Q Consensus       165 ~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~  243 (501)
                                  ++++|++|+.||.|++|| .+..+..+..|...|.+++|+    +++++|++++.||.|++||+.++.
T Consensus       119 ------------~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~  182 (425)
T 1r5m_A          119 ------------DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWN----KDGTHIISMDVENVTILWNVISGT  182 (425)
T ss_dssp             ------------TSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEEC----TTSSEEEEEETTCCEEEEETTTTE
T ss_pred             ------------CCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEEC----CCCCEEEEEecCCeEEEEECCCCc
Confidence                        899999999999999999 888889999999999999997    899999999999999999998876


Q ss_pred             ccccccceeeccCCCCc---------------eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC
Q 010784          244 KRGQQALKATLYGHEKP---------------IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV  308 (501)
Q Consensus       244 ~~~~~~~~~~~~~~~~~---------------v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  308 (501)
                            ....+..+...               +.++.|++ + ..+++++.||.|++||+++++......     .+...
T Consensus       183 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~-----~~~~~  249 (425)
T 1r5m_A          183 ------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLI-----GHHGP  249 (425)
T ss_dssp             ------EEEEECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEEC-----CCSSC
T ss_pred             ------EEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeec-----cCCCc
Confidence                  36666666666               89999997 4 468899999999999999876543322     34455


Q ss_pred             ceeeecCCCe--EEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCC
Q 010784          309 PVDMKCHESM--LYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQP  384 (501)
Q Consensus       309 ~~~~~~~~~~--~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~  384 (501)
                      +.++.++++.  ++.+. ++.+++||+++++.+..+..|...|.+++|+|++ ++++++.++ |++||+++++..     
T Consensus       250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-----  323 (425)
T 1r5m_A          250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL-----  323 (425)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE-----
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe-----
Confidence            6666666554  33333 3589999999999999999999999999999999 888999888 999999986654     


Q ss_pred             cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc--------------------cccccccCCCCCCCc--ce
Q 010784          385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM--------------------LANSLLCNYPEEADI--ST  441 (501)
Q Consensus       385 ~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~~~--~v  441 (501)
                       ..+..|...|.+++|+|+ +++++++.||.|++||+.+++                    .+..+     ..|..  .|
T Consensus       324 -~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v  397 (425)
T 1r5m_A          324 -ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-----QSSQDNDYI  397 (425)
T ss_dssp             -EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE-----CCTTCCCCE
T ss_pred             -EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh-----cCcccCCce
Confidence             778889999999999999 889998999999999999888                    77777     44544  89


Q ss_pred             eeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          442 GCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       442 ~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      .+++|+|++++|++++  .||.|++|++.
T Consensus       398 ~~~~~s~~~~~l~~~~--~dg~i~iw~~~  424 (425)
T 1r5m_A          398 FDLSWNCAGNKISVAY--SLQEGSVVAIP  424 (425)
T ss_dssp             EEEEECTTSSEEEEEE--SSSCCEEEECC
T ss_pred             EEEEccCCCceEEEEe--cCceEEEEeec
Confidence            9999999999999999  66999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.8e-40  Score=361.64  Aligned_cols=354  Identities=16%  Similarity=0.261  Sum_probs=295.6

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ..+..|...|++++|+|+|.++++|+.|+.|++||..++ +.+..+.+|.+.|++++|+|             ++++|++
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~-~~~~~~~~h~~~v~~~~~s~-------------~~~~l~s  674 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-EKLLDIKAHEDEVLCCAFSS-------------DDSYIAT  674 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-------------TSSEEEE
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC-CEEEEeccCCCCEEEEEEec-------------CCCEEEE
Confidence            455678888999999999999999999999999999985 78889999999999999999             8999999


Q ss_pred             eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                      |+.||+|++||  +++.+..+.+|...|.+++|++  +.++.++++|+.||.|++||+.++.      ....+.+|...|
T Consensus       675 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~sg~~d~~v~vwd~~~~~------~~~~~~~h~~~v  746 (1249)
T 3sfz_A          675 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN--KSNHLLLATGSNDFFLKLWDLNQKE------CRNTMFGHTNSV  746 (1249)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS--SSSCCEEEEEETTSCEEEEETTSSS------EEEEECCCSSCE
T ss_pred             EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEec--CCCceEEEEEeCCCeEEEEECCCcc------hhheecCCCCCE
Confidence            99999999999  7888999999999999999972  2256799999999999999999886      478888999999


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce--------ecCCCceeeecCC--CeEEEEeCCcEEEEE
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT--------SVPGVPVDMKCHE--SMLYIASGSSVVTID  331 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~i~~~d  331 (501)
                      ++++|+| ++.++++++.||.|++||+++++...........        .....+.++.+++  ..++++..+.+.+||
T Consensus       747 ~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d  825 (1249)
T 3sfz_A          747 NHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD  825 (1249)
T ss_dssp             EEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred             EEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            9999998 7889999999999999999988654433221111        1122344455544  455566677999999


Q ss_pred             cCCCceEeeec-cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE
Q 010784          332 LRTMQKVMTPA-ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG  408 (501)
Q Consensus       332 ~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~  408 (501)
                      +.++..+..+. +|...|.+++|+|++.++++++.++ |++||+.++...      ..+.+|...|++++|+|+ .++++
T Consensus       826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~------~~~~~h~~~v~~v~~spdg~~l~s  899 (1249)
T 3sfz_A          826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV------ADCRGHLSWVHGVMFSPDGSSFLT  899 (1249)
T ss_dssp             TTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee------eecCCCccceEEEEECCCCCEEEE
Confidence            99999887765 7899999999999999999999998 999999986654      788899999999999999 78888


Q ss_pred             ecCCCcEEEEeCCC------------------------------------------------------------------
Q 010784          409 GRDDLRINIWETDT------------------------------------------------------------------  422 (501)
Q Consensus       409 gs~dg~i~iwd~~~------------------------------------------------------------------  422 (501)
                      ++.||.|++|++.+                                                                  
T Consensus       900 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g  979 (1249)
T 3sfz_A          900 ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFG  979 (1249)
T ss_dssp             EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEE
T ss_pred             EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEE
Confidence            88999999998542                                                                  


Q ss_pred             -------------cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc----------------
Q 010784          423 -------------GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT----------------  473 (501)
Q Consensus       423 -------------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~----------------  473 (501)
                                   ++.+..+     .+|...|.+++|+|+|++|++++  .||.|++|++..+.                
T Consensus       980 ~~~g~i~i~d~~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~ 1052 (1249)
T 3sfz_A          980 DEDGAIKIIELPNNRVFSSG-----VGHKKAVRHIQFTADGKTLISSS--EDSVIQVWNWQTGDYVFLQAHQETVKDFRL 1052 (1249)
T ss_dssp             ETTSCCEEEETTTTSCEEEC-----CCCSSCCCCEEECSSSSCEEEEC--SSSBEEEEETTTTEEECCBCCSSCEEEEEE
T ss_pred             cCCCCEEEEEcCCCceeeec-----ccCCCceEEEEECCCCCEEEEEc--CCCEEEEEECCCCceEEEecCCCcEEEEEE
Confidence                         1111112     35788899999999999999999  66999999976542                


Q ss_pred             ---cceeecCCCCceeeecccCC
Q 010784          474 ---CPVLKHEVQNDSKFWGPQCY  493 (501)
Q Consensus       474 ---~~~~s~~~d~~~~~w~~~~~  493 (501)
                         ..+++++.|+.+++|++...
T Consensus      1053 ~~~~~l~~~~~dg~v~vwd~~~~ 1075 (1249)
T 3sfz_A         1053 LQDSRLLSWSFDGTVKVWNVITG 1075 (1249)
T ss_dssp             CSSSEEEEEESSSEEEEEETTTT
T ss_pred             cCCCcEEEEECCCcEEEEECCCC
Confidence               34668889999999998654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.5e-40  Score=310.44  Aligned_cols=296  Identities=18%  Similarity=0.271  Sum_probs=247.6

Q ss_pred             eeeEEEecCCCCceEEeeCC-cEEEeecCCeeeEEEEeccccc----ccceecccCCcceeEEEeeccCcCcccccCCCC
Q 010784          102 LDVCFYSVAKPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSES----YYRATLSDHKARITCMRLFPLHETSLFRSEPQR  176 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~~----~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~  176 (501)
                      ++..+..|...|++|+|+|+ +.+|+||+.|++|+|||+.++.    .....+.+|.+.|.+++|+|             
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-------------   96 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-------------   96 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT-------------
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC-------------
Confidence            34567789999999999997 6899999999999999987642    35677899999999999999             


Q ss_pred             cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      ++++|++|+.||.|++|+  ..........+...+..+.++    +++.+|++|+.|+.+++||+.....     .....
T Consensus        97 dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~s~d~~~~~~d~~~~~~-----~~~~~  167 (340)
T 4aow_A           97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS----SDNRQIVSGSRDKTIKLWNTLGVCK-----YTVQD  167 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC----TTSSCEEEEETTSCEEEECTTSCEE-----EEECS
T ss_pred             CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe----ecCccceeecCCCeEEEEEeCCCce-----EEEEe
Confidence            899999999999999998  555666677788888888886    7899999999999999999987653     45567


Q ss_pred             cCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784          255 YGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR  333 (501)
Q Consensus       255 ~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  333 (501)
                      .+|...+..++|++.. ..++++++.|+.|++||+++++                                         
T Consensus       168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-----------------------------------------  206 (340)
T 4aow_A          168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-----------------------------------------  206 (340)
T ss_dssp             SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----------------------------------------
T ss_pred             ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----------------------------------------
Confidence            7899999999998753 4578899999999999998763                                         


Q ss_pred             CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC
Q 010784          334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD  411 (501)
Q Consensus       334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~  411 (501)
                         .+..+.+|.+.|++++|+|++++|++|+.|+ |++||+++.+.+      ..+.. ...|.+++|+|+ .++++ +.
T Consensus       207 ---~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~------~~~~~-~~~v~~~~~~~~~~~~~~-~~  275 (340)
T 4aow_A          207 ---LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL------YTLDG-GDIINALCFSPNRYWLCA-AT  275 (340)
T ss_dssp             ---EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE------EEEEC-SSCEEEEEECSSSSEEEE-EE
T ss_pred             ---eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee------eeecC-CceEEeeecCCCCceeec-cC
Confidence               3345667899999999999999999999998 999999986654      56654 468999999999 66655 58


Q ss_pred             CCcEEEEeCCCcccccccccC----CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          412 DLRINIWETDTGMLANSLLCN----YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       412 dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      |+.|++||++++..+..+...    ....|...|++++|+|+|++|++|+  .||.|++||+++|.
T Consensus       276 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs--~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY--TDNLVRVWQVTIGT  339 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE--TTSCEEEEEEEC--
T ss_pred             CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe--CCCEEEEEeCCCcC
Confidence            999999999988777665422    1246788999999999999999999  66999999999875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-40  Score=304.93  Aligned_cols=251  Identities=19%  Similarity=0.272  Sum_probs=221.7

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      +..+++.+|.+.|++++|+|             ++++|++|+.||+|++||  ++..+..+..|..+|.+++|+    ++
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp-------------~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~----~~   66 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHP-------------TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI----AR   66 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECS-------------SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE----GG
T ss_pred             eeEEeecCCCCceEEEEECC-------------CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEe----CC
Confidence            55678999999999999999             899999999999999999  677888999999999999998    78


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      +++|++|+.|++|++||+.+++      .+..+.+|...|.+++|+| ++.+|++|+.|++|++||++++..        
T Consensus        67 ~~~l~s~s~d~~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~--------  131 (304)
T 2ynn_A           67 KNWIIVGSDDFRIRVFNYNTGE------KVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWA--------  131 (304)
T ss_dssp             GTEEEEEETTSEEEEEETTTCC------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTE--------
T ss_pred             CCEEEEECCCCEEEEEECCCCc------EEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcc--------
Confidence            9999999999999999999887      4788899999999999998 778999999999999999876521        


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                                                         ....+.+|...|.+++|+| ++.+|++|+.|+ |++||++.....
T Consensus       132 -----------------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~  176 (304)
T 2ynn_A          132 -----------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (304)
T ss_dssp             -----------------------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS
T ss_pred             -----------------------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence                                               2245677999999999999 678999999999 999999876543


Q ss_pred             CCCCCcccc-cCcccCeEEEEecC--C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784          380 VKPQPMAEL-DGHVGSVTQLHMDP--Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT  455 (501)
Q Consensus       380 ~~~~~~~~~-~~h~~~v~~l~~~~--~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  455 (501)
                            ..+ .+|...+..+.++|  + .++++|+.|++|++||+++++++.++     .+|...|..++|+|++++|++
T Consensus       177 ------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~s  245 (304)
T 2ynn_A          177 ------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMSNVSFAVFHPTLPIIIS  245 (304)
T ss_dssp             ------EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEECSSSSEEEE
T ss_pred             ------ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-----CCCCCCEEEEEECCCCCEEEE
Confidence                  333 45667899999987  4 78999999999999999999999999     567889999999999999999


Q ss_pred             eecCCCceEEEeeccCCcc
Q 010784          456 ASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       456 ~~~d~~g~i~~w~~~~~~~  474 (501)
                      |+  .||.|++||......
T Consensus       246 ~s--~Dg~i~iWd~~~~~~  262 (304)
T 2ynn_A          246 GS--EDGTLKIWNSSTYKV  262 (304)
T ss_dssp             EE--TTSCEEEEETTTCCE
T ss_pred             Ec--CCCeEEEEECCCCce
Confidence            99  669999999876543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-41  Score=320.49  Aligned_cols=294  Identities=19%  Similarity=0.240  Sum_probs=242.7

Q ss_pred             EEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEE
Q 010784          136 IDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLS  213 (501)
Q Consensus       136 vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~  213 (501)
                      .|+... ..+.+++.+|.+.|++++|+|             ++++|+||+.||+|+|||  +++....+..|...|.+++
T Consensus        50 ~~~~~~-~~~~~~l~gH~~~V~~~~~sp-------------~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~  115 (380)
T 3iz6_a           50 SFNPTD-LVCCRTLQGHSGKVYSLDWTP-------------EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECA  115 (380)
T ss_dssp             CCCCCC-CEEEEEECCCSSCEEEEEECT-------------TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCE
T ss_pred             ccccce-eEEeecccccccEEEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEE
Confidence            445444 366788999999999999999             899999999999999999  7788889999999999999


Q ss_pred             eeecCCCCCCEEEEeeCCCcEEEEeccCCCc-cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784          214 DKLLGDGSGKILASGGEDATVRLWSLSSSGK-RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS  292 (501)
Q Consensus       214 ~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~  292 (501)
                      |+    +++++|++|+.|+.|++||+.+... .........+.+|.+.|.++.|.|.++..|++|+.|++|++||+++++
T Consensus       116 ~s----~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~  191 (380)
T 3iz6_a          116 FA----PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ  191 (380)
T ss_dssp             EC----TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred             EC----CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence            97    8999999999999999999976432 112234567889999999999998767789999999999999999875


Q ss_pred             cccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEE
Q 010784          293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMT  370 (501)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~i  370 (501)
                      .+.....                                       ....+|...|.++++++ ++.+|++|+.|+ |++
T Consensus       192 ~~~~~~~---------------------------------------~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~  232 (380)
T 3iz6_a          192 RISIFGS---------------------------------------EFPSGHTADVLSLSINSLNANMFISGSCDTTVRL  232 (380)
T ss_dssp             EEEEECC---------------------------------------CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred             EEEEeec---------------------------------------ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence            4321100                                       01145888999999987 789999999999 999


Q ss_pred             EecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCC--CCCCcceeeeEee
Q 010784          371 WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP--EEADISTGCSAMA  447 (501)
Q Consensus       371 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s  447 (501)
                      ||++...     ..+..+.+|.+.|++++|+|+ .++++|+.||+|++||+++++.+..+..+..  ..+...|++++|+
T Consensus       233 wd~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  307 (380)
T 3iz6_a          233 WDLRITS-----RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS  307 (380)
T ss_dssp             EETTTTC-----CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred             EECCCCC-----cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence            9998542     235788999999999999999 9999999999999999999998887754321  1233458999999


Q ss_pred             ccccEEEEeecCCCceEEEeecc-------------------------CCccceeecCCCCceeeecccCC
Q 010784          448 VSGCRIVTASYGEPGLLQFRDFS-------------------------NATCPVLKHEVQNDSKFWGPQCY  493 (501)
Q Consensus       448 ~~g~~l~s~~~d~~g~i~~w~~~-------------------------~~~~~~~s~~~d~~~~~w~~~~~  493 (501)
                      |+|++|++|+  .+|.|++||..                         +++..+++|+.|+.+++|++...
T Consensus       308 ~~g~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          308 ISGRLLFAGY--SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             SSSSEEEEEC--TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             CCCCEEEEEE--CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            9999999999  66999999843                         33456789999999999998643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-41  Score=348.82  Aligned_cols=345  Identities=9%  Similarity=0.034  Sum_probs=256.0

Q ss_pred             ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      .+..+|.+++|++ +.+|++++.|+.|++||+.++ +.+..+. |.+.|++++|+|             ++++|++|+.|
T Consensus        56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~-~~~~~~~-~~~~V~~v~~sp-------------~g~~l~sgs~d  119 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ-KVLTTVF-VPGKITSIDTDA-------------SLDWMLIGLQN  119 (902)
T ss_dssp             SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC-SEEEEEE-CSSCEEEEECCT-------------TCSEEEEEETT
T ss_pred             CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC-cEEEEEc-CCCCEEEEEECC-------------CCCEEEEEcCC
Confidence            3566799999999 779999999999999999985 6667775 778999999999             89999999999


Q ss_pred             CceEEec--CCcee-----------eeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784          188 HSIRLWW--KGSCQ-----------RCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       188 g~i~vwd--~~~~~-----------~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      |+|++||  .+...           ..+.+|.++|.+++|+    | ++..+++|+.||.| +||++++..      ...
T Consensus       120 g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s----p~~~~~l~~g~~dg~v-lWd~~~~~~------~~~  188 (902)
T 2oaj_A          120 GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN----PRDIGTVLISYEYVTL-TYSLVENEI------KQS  188 (902)
T ss_dssp             SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE----TTEEEEEEEECSSCEE-EEETTTTEE------EEE
T ss_pred             CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc----cCCCCEEEEEeCCCcE-EEECCCCce------EEE
Confidence            9999999  33332           3457899999999998    5 45789999999999 999998653      444


Q ss_pred             ccCC------------------CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec----ccce--------
Q 010784          254 LYGH------------------EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC----VGMT--------  303 (501)
Q Consensus       254 ~~~~------------------~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~--------  303 (501)
                      +..|                  ...|.+++|+| ++.+|++|+.||.|++||+++++.+.....    .+..        
T Consensus       189 ~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~  267 (902)
T 2oaj_A          189 FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDS  267 (902)
T ss_dssp             ECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCC
T ss_pred             EecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCC
Confidence            4433                  57899999998 788999999999999999988765321000    0000        


Q ss_pred             -ecCCCceeeec--------------------------------------------------------------------
Q 010784          304 -SVPGVPVDMKC--------------------------------------------------------------------  314 (501)
Q Consensus       304 -~~~~~~~~~~~--------------------------------------------------------------------  314 (501)
                       .....+.++.+                                                                    
T Consensus       268 ~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~  347 (902)
T 2oaj_A          268 STNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVN  347 (902)
T ss_dssp             SSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEE
T ss_pred             ccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEE
Confidence             00000000000                                                                    


Q ss_pred             ---------------CCCeEEEEe-CCcEEEEEcCCCceEee-------e------------------------------
Q 010784          315 ---------------HESMLYIAS-GSSVVTIDLRTMQKVMT-------P------------------------------  341 (501)
Q Consensus       315 ---------------~~~~~~~~~-~~~i~~~d~~~~~~~~~-------~------------------------------  341 (501)
                                     ++..+++.+ ++.+++||+.++.....       +                              
T Consensus       348 ~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~  427 (902)
T 2oaj_A          348 ILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK  427 (902)
T ss_dssp             EEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC
T ss_pred             EEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC
Confidence                           011122222 35788888866643221       2                              


Q ss_pred             ----ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc--c-----cCcccCeEEEEecCC-eEEEE
Q 010784          342 ----AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE--L-----DGHVGSVTQLHMDPY-KIVTG  408 (501)
Q Consensus       342 ----~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~--~-----~~h~~~v~~l~~~~~-~~l~~  408 (501)
                          .+|...+.+++|+|++++|++|+.|+ |++||+.++...  ......  +     .+|...|++++|+|+ ++||+
T Consensus       428 ~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~--~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAs  505 (902)
T 2oaj_A          428 DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ--DNASFEVNLSRTLNKAKELAVDKISFAAETLELAV  505 (902)
T ss_dssp             CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT--TTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEE
T ss_pred             CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc--CCceEEeechhhcCCCCCCceeEEEecCCCCeEEE
Confidence                22333344455678999999999999 999999987421  001111  1     278899999999999 99999


Q ss_pred             ecCCCcEEEEeCCCcc---------------------------------------------cccccccCCCCCCCcceee
Q 010784          409 GRDDLRINIWETDTGM---------------------------------------------LANSLLCNYPEEADISTGC  443 (501)
Q Consensus       409 gs~dg~i~iwd~~~~~---------------------------------------------~~~~~~~~~~~~~~~~v~~  443 (501)
                      |+.||+|+|||+.+++                                             ++.++     .+|...|++
T Consensus       506 gs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-----~~h~~~V~s  580 (902)
T 2oaj_A          506 SIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV-----HANKGKTSA  580 (902)
T ss_dssp             EETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE-----CCCSCSEEE
T ss_pred             EecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE-----EcCCCcEEE
Confidence            9999999999998763                                             23344     468899999


Q ss_pred             eEeeccccEEEEeecCCCceEEEeeccCC-----------------------------------ccceeecCCCCceeee
Q 010784          444 SAMAVSGCRIVTASYGEPGLLQFRDFSNA-----------------------------------TCPVLKHEVQNDSKFW  488 (501)
Q Consensus       444 ~~~s~~g~~l~s~~~d~~g~i~~w~~~~~-----------------------------------~~~~~s~~~d~~~~~w  488 (501)
                      ++||||| +||+|+  .|+.|++||+..+                                   ...+++|+.|+++++|
T Consensus       581 vafSpdG-~lAsgs--~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~w  657 (902)
T 2oaj_A          581 INNSNIG-FVGIAY--AAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITY  657 (902)
T ss_dssp             EEECBTS-EEEEEE--TTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEE
T ss_pred             EEecCCc-EEEEEe--CCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEE
Confidence            9999999 999999  6799999997542                                   1356789999999999


Q ss_pred             cc
Q 010784          489 GP  490 (501)
Q Consensus       489 ~~  490 (501)
                      ++
T Consensus       658 d~  659 (902)
T 2oaj_A          658 KI  659 (902)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.2e-40  Score=307.60  Aligned_cols=273  Identities=18%  Similarity=0.264  Sum_probs=233.9

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      +...++.+|.+.|++++|+|             ++++|+||+.||+|+|||  +++....+..|...|.+++|+    |+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~-------------d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~s----p~  117 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCK-------------DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYA----PS  117 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECT-------------TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEEC----TT
T ss_pred             EEEEEecCCCCeEEEEEECC-------------CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEEC----CC
Confidence            45677899999999999999             899999999999999999  677778888899999999997    89


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      +.+|++|+.|+.+++|++..............+.+|...|.+++|+| ++..|++++.|++|++||+++++         
T Consensus       118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~---------  187 (354)
T 2pbi_B          118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQ---------  187 (354)
T ss_dssp             SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCC---------
T ss_pred             CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCe---------
Confidence            99999999999999999976533222334566778999999999997 67789999999999999998764         


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC--CCcEEEEEcCCc-EEEEecCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP--SKSLICTGGIGK-AMTWDIRRSQD  378 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~~~d~-i~iwd~~~~~~  378 (501)
                                                         .+..+.+|...|.+++++|  ++++|++|+.|+ |++||+++++.
T Consensus       188 -----------------------------------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~  232 (354)
T 2pbi_B          188 -----------------------------------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC  232 (354)
T ss_dssp             -----------------------------------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE
T ss_pred             -----------------------------------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence                                               3345677899999999988  478999999988 99999998765


Q ss_pred             CCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          379 AVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       379 ~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      .      ..+.+|...|++++|+|+ .++++|+.|++|++||+++++.+..+..   ..+...+.+++|+|+|++|++|+
T Consensus       233 ~------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~  303 (354)
T 2pbi_B          233 V------QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRLLFAGY  303 (354)
T ss_dssp             E------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEE
T ss_pred             E------EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCEEEEEE
Confidence            4      788999999999999999 8999999999999999998877766632   22345788999999999999999


Q ss_pred             cCCCceEEEeecc---------------------CCccceeecCCCCceeeec
Q 010784          458 YGEPGLLQFRDFS---------------------NATCPVLKHEVQNDSKFWG  489 (501)
Q Consensus       458 ~d~~g~i~~w~~~---------------------~~~~~~~s~~~d~~~~~w~  489 (501)
                        .|+.|++||+.                     +++..+++++.|+.+++|+
T Consensus       304 --~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          304 --NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             --TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             --CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence              66999999964                     3445678999999999995

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.3e-40  Score=316.01  Aligned_cols=326  Identities=11%  Similarity=0.105  Sum_probs=261.7

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      +++++|+|++.++++|+.|+.+++||..++ +....+..| ..+....|++             ++++|++|+.||.|++
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~-~~~~~~~~~~-------------~~~~l~~~~~dg~i~i  123 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIR-DGSKMLKRA-DYTAVDTAKL-------------QMRRFILGTTEGDIKV  123 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSE-ETTTTSCSC-CEEEEEEECS-------------SSCEEEEEETTSCEEE
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEeccc-ceeeEEecC-CceEEEEEec-------------CCCEEEEEECCCCEEE
Confidence            568999999999999999999999999985 666667776 4455556777             8999999999999999


Q ss_pred             ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784          193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK  270 (501)
Q Consensus       193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  270 (501)
                      ||  .+.....+.+|...|++++|+    +++++|++|+.||.|++||+.+++      .+..+.+|...|.+++|+| +
T Consensus       124 wd~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~s~d~~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~~-~  192 (420)
T 3vl1_A          124 LDSNFNLQREIDQAHVSEITKLKFF----PSGEALISSSQDMQLKIWSVKDGS------NPRTLIGHRATVTDIAIID-R  192 (420)
T ss_dssp             ECTTSCEEEEETTSSSSCEEEEEEC----TTSSEEEEEETTSEEEEEETTTCC------CCEEEECCSSCEEEEEEET-T
T ss_pred             EeCCCcceeeecccccCccEEEEEC----CCCCEEEEEeCCCeEEEEeCCCCc------CceEEcCCCCcEEEEEEcC-C
Confidence            99  677777788999999999997    789999999999999999999876      4778889999999999998 7


Q ss_pred             CeEEEEEeCCCeEEEEECCCCccccceecccce-------------------ecCCCceeeecCCCeEEEEeC---CcEE
Q 010784          271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-------------------SVPGVPVDMKCHESMLYIASG---SSVV  328 (501)
Q Consensus       271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~---~~i~  328 (501)
                      +.+|++++.||.|++||+++++.+.........                   .....+.++.++++..+++++   +.++
T Consensus       193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  272 (420)
T 3vl1_A          193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT  272 (420)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred             CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence            889999999999999999988765543321100                   012445556666666555543   4899


Q ss_pred             EEEcCCCceEeeec-cCCCcEEEEEEcCCCc-EEEEEcCCc-EEEEecCCCCCCCCCCCcccccC-cccCeEEEEecCCe
Q 010784          329 TIDLRTMQKVMTPA-ICKPILHSFSIMPSKS-LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG-HVGSVTQLHMDPYK  404 (501)
Q Consensus       329 ~~d~~~~~~~~~~~-~~~~~v~~v~~~~~~~-~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~  404 (501)
                      +||+++++.+..+. .|...|.+++|+|++. +|++|+.|+ |++||+++++..     +..+.. |...|.++.+.+..
T Consensus       273 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~  347 (420)
T 3vl1_A          273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP-----VGEFLINEGTPINNVYFAAGA  347 (420)
T ss_dssp             EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC-----SEEEEESTTSCEEEEEEETTE
T ss_pred             EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc-----hhhhhccCCCCceEEEeCCCC
Confidence            99999998877665 4788999999999998 999999988 999999987542     456665 67788888776568


Q ss_pred             EEEEecCCCcEEEEeCCCccccccc---ccC-CCCCCCcceeeeEeecccc---EEEEeecCCCceEEEeeccC
Q 010784          405 IVTGGRDDLRINIWETDTGMLANSL---LCN-YPEEADISTGCSAMAVSGC---RIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       405 ~l~~gs~dg~i~iwd~~~~~~~~~~---~~~-~~~~~~~~v~~~~~s~~g~---~l~s~~~d~~g~i~~w~~~~  471 (501)
                      ++++++.||.|++|++........+   ... ....+...|..++|+|+++   .|++++  .+|.+.+|++++
T Consensus       348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g--~~g~~~~~~~~~  419 (420)
T 3vl1_A          348 LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG--KNNFCALYNLSN  419 (420)
T ss_dssp             EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEE--TTTEEEEEESCC
T ss_pred             EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEc--CCceEEEEeccC
Confidence            8888899999999999874322111   000 0135678899999999999   676666  569999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.7e-40  Score=302.49  Aligned_cols=266  Identities=19%  Similarity=0.312  Sum_probs=229.5

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C------CceeeeccCCCCceEEEEeee
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K------GSCQRCFKGHNGPVSTLSDKL  216 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~------~~~~~~~~~h~~~v~~l~~s~  216 (501)
                      .+..++.+|.+.|++++|+|.            ++++|++|+.|++|++|| .      +..+..+.+|...|.+++|+ 
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~------------~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-   74 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAG------------QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT-   74 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSS------------CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC-
T ss_pred             EEEEEEccccceEEEEEccCC------------CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEEC-
Confidence            455678999999999999983            358999999999999998 1      33567889999999999997 


Q ss_pred             cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784          217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS  296 (501)
Q Consensus       217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~  296 (501)
                         +++++|++|+.|++|++||+.+++      ....+.+|...|.+++|+| ++.+|++|+.|+.|++||++..     
T Consensus        75 ---~dg~~l~s~s~D~~v~~wd~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~-----  139 (319)
T 3frx_A           75 ---ADGAYALSASWDKTLRLWDVATGE------TYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQ-----  139 (319)
T ss_dssp             ---TTSSEEEEEETTSEEEEEETTTTE------EEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSC-----
T ss_pred             ---CCCCEEEEEeCCCEEEEEECCCCC------eeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-----
Confidence               899999999999999999999876      4788899999999999997 7889999999999999998643     


Q ss_pred             eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC------CcEEEEEcCCc-EE
Q 010784          297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS------KSLICTGGIGK-AM  369 (501)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~------~~~l~~~~~d~-i~  369 (501)
                                                              .+..+.+|...|.++.++|.      +.++++++.|+ |+
T Consensus       140 ----------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~  179 (319)
T 3frx_A          140 ----------------------------------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK  179 (319)
T ss_dssp             ----------------------------------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEE
T ss_pred             ----------------------------------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEE
Confidence                                                    23455678899999999985      45899999998 99


Q ss_pred             EEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784          370 TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       370 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                      +||+++.+..      ..+.+|...|++++|+|+ ++|++|+.||.|++||+.+++.+.++..      ...|.+++|+|
T Consensus       180 ~wd~~~~~~~------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~sp  247 (319)
T 3frx_A          180 AWNLNQFQIE------ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA------QDEVFSLAFSP  247 (319)
T ss_dssp             EEETTTTEEE------EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC------CSCEEEEEECS
T ss_pred             EEECCcchhh------eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC------CCcEEEEEEcC
Confidence            9999986544      778899999999999999 9999999999999999999999888842      35799999999


Q ss_pred             cccEEEEeecCCCceEEEeecc-----------------------------CCccceeecCCCCceeeecccC
Q 010784          449 SGCRIVTASYGEPGLLQFRDFS-----------------------------NATCPVLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       449 ~g~~l~s~~~d~~g~i~~w~~~-----------------------------~~~~~~~s~~~d~~~~~w~~~~  492 (501)
                      ++.+|++++.   +.+++|++.                             +++..+++|+.|+.+++|++..
T Consensus       248 ~~~~la~~~~---~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          248 NRYWLAAATA---TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             SSSEEEEEET---TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             CCCEEEEEcC---CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            9999999873   358888643                             3456788999999999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-40  Score=340.66  Aligned_cols=344  Identities=12%  Similarity=0.079  Sum_probs=250.8

Q ss_pred             eeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784          103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV  182 (501)
Q Consensus       103 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (501)
                      ....+.+...|++++|+|++.++|+|+.|+.|+||+..+. +....+ .|...|++++|+|              +++|+
T Consensus        10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-~~~~~~-~~~~~V~~l~fsp--------------g~~L~   73 (902)
T 2oaj_A           10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-EVVIKL-EDRSAIKEMRFVK--------------GIYLV   73 (902)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-EEEEEC-SSCCCEEEEEEET--------------TTEEE
T ss_pred             cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-EEEEEc-CCCCCEEEEEEcC--------------CCEEE
Confidence            3455678889999999999999999999999999998764 444443 5888999999998              46999


Q ss_pred             EeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce-------ee
Q 010784          183 TSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK-------AT  253 (501)
Q Consensus       183 s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-------~~  253 (501)
                      +++.|++|+|||  +++++..+. |...|++++|+    +++++|++|+.||.|++||+.++... .. .+       ..
T Consensus        74 S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~s----p~g~~l~sgs~dg~V~lwd~~~~~~~-~~-~i~~~~~~~~~  146 (902)
T 2oaj_A           74 VINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTD----ASLDWMLIGLQNGSMIVYDIDRDQLS-SF-KLDNLQKSSFF  146 (902)
T ss_dssp             EEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECC----TTCSEEEEEETTSCEEEEETTTTEEE-EE-EECCHHHHHTC
T ss_pred             EEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEEC----CCCCEEEEEcCCCcEEEEECCCCccc-cc-eeccccccccc
Confidence            999999999999  677777776 77899999997    89999999999999999999876520 00 00       34


Q ss_pred             ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc-------------ceecCCCceeeecCCCeEE
Q 010784          254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG-------------MTSVPGVPVDMKCHESMLY  320 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~  320 (501)
                      +.+|.++|.+++|+|.+...+++|+.||.| +||+++++.........             ...+...+.++.++++..+
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~  225 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH  225 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence            578999999999998667899999999999 99999886554332110             0012355788888887665


Q ss_pred             EEeC---CcEEEEEcCCCceEee--e---cc-------------CCCcEEEEEEc----CCC-cEEEEEcCC------cE
Q 010784          321 IASG---SSVVTIDLRTMQKVMT--P---AI-------------CKPILHSFSIM----PSK-SLICTGGIG------KA  368 (501)
Q Consensus       321 ~~~~---~~i~~~d~~~~~~~~~--~---~~-------------~~~~v~~v~~~----~~~-~~l~~~~~d------~i  368 (501)
                      ++++   +.|++||+++++.+..  +   ..             |...|.+++|+    |++ .++++|+.+      .+
T Consensus       226 lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v  305 (902)
T 2oaj_A          226 IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSL  305 (902)
T ss_dssp             EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCE
T ss_pred             EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceE
Confidence            5543   4899999999887653  2   11             34579999995    443 566666432      25


Q ss_pred             EEEe-----------------------------------------------------------------------cCCCC
Q 010784          369 MTWD-----------------------------------------------------------------------IRRSQ  377 (501)
Q Consensus       369 ~iwd-----------------------------------------------------------------------~~~~~  377 (501)
                      .+|+                                                                       +.++.
T Consensus       306 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~  385 (902)
T 2oaj_A          306 TMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGI  385 (902)
T ss_dssp             EEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCC
Confidence            5555                                                                       22221


Q ss_pred             CCCC-----------------------------------CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784          378 DAVK-----------------------------------PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       378 ~~~~-----------------------------------~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~  421 (501)
                      ...+                                   ......+.+|...+.+++|+|+ +++++|+.|++|++||+.
T Consensus       386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~  465 (902)
T 2oaj_A          386 FTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDAS  465 (902)
T ss_dssp             EECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESS
T ss_pred             cccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECC
Confidence            0000                                   0000112344444555666888 999999999999999999


Q ss_pred             Cccccc--ccccC----CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          422 TGMLAN--SLLCN----YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       422 ~~~~~~--~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      ++....  .+...    ...+|...|.+++|+|||++||+|+  .||+|++|++..+
T Consensus       466 ~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs--~DgtV~lwd~~~~  520 (902)
T 2oaj_A          466 HGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI--ETGDVVLFKYEVN  520 (902)
T ss_dssp             CCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE--TTSCEEEEEEEEC
T ss_pred             CccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe--cCcEEEEEEecCc
Confidence            875321  11100    0126788999999999999999999  6699999998644

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.5e-40  Score=305.28  Aligned_cols=279  Identities=21%  Similarity=0.226  Sum_probs=229.4

Q ss_pred             cccceecccCCc-ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee---eeccCCCCceEEEEeee
Q 010784          143 SYYRATLSDHKA-RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ---RCFKGHNGPVSTLSDKL  216 (501)
Q Consensus       143 ~~~~~~~~~h~~-~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~---~~~~~h~~~v~~l~~s~  216 (501)
                      .+++.++.+|.+ .|++++|+|             ++++|++|+.||+|+|||  .+...   ....+|...|.+++|+ 
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp-------------~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~s-   70 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNP-------------AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS-   70 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECT-------------TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEEC-
T ss_pred             EEEeeeecCCCCCcEEEEEECC-------------CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEEC-
Confidence            356778899988 999999999             899999999999999999  33322   2336899999999997 


Q ss_pred             cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784          217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS  296 (501)
Q Consensus       217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~  296 (501)
                         +++++|++|+.|++|++||+..+..    ..+..+.+|...|.+++|+| ++++|++|+.|+.|++||++++...  
T Consensus        71 ---p~g~~l~s~s~D~~v~iw~~~~~~~----~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~--  140 (345)
T 3fm0_A           71 ---PCGNYLASASFDATTCIWKKNQDDF----ECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEY--  140 (345)
T ss_dssp             ---TTSSEEEEEETTSCEEEEEECCC-E----EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCE--
T ss_pred             ---CCCCEEEEEECCCcEEEEEccCCCe----EEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCe--
Confidence               8999999999999999999987642    24678889999999999998 7889999999999999999865321  


Q ss_pred             eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784          297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~  375 (501)
                                                             +.+..+.+|...|.+++|+|++++|++|+.|+ |++||.+.
T Consensus       141 ---------------------------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~  181 (345)
T 3fm0_A          141 ---------------------------------------ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE  181 (345)
T ss_dssp             ---------------------------------------EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET
T ss_pred             ---------------------------------------EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC
Confidence                                                   22345667899999999999999999999998 99999987


Q ss_pred             CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc---------------cccccccCCCCCCCc
Q 010784          376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM---------------LANSLLCNYPEEADI  439 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~---------------~~~~~~~~~~~~~~~  439 (501)
                      .+.    .+..++.+|...|++++|+|+ ++|++|+.|++|++|+.....               ++.++.    ..|..
T Consensus       182 ~~~----~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~  253 (345)
T 3fm0_A          182 DDW----VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS----GFHSR  253 (345)
T ss_dssp             TEE----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC----SSCSS
T ss_pred             CCE----EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec----CCCCC
Confidence            542    234678899999999999999 999999999999999974322               122221    23778


Q ss_pred             ceeeeEeeccccEEEEeecCCCceEEEeeccC------------------------------Cc-cceeecCCCCceeee
Q 010784          440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSN------------------------------AT-CPVLKHEVQNDSKFW  488 (501)
Q Consensus       440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~------------------------------~~-~~~~s~~~d~~~~~w  488 (501)
                      .|.+++|+|++..|++++  .|+.|++|+...                              .. ..+++++.|+.+++|
T Consensus       254 ~v~~v~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W  331 (345)
T 3fm0_A          254 TIYDIAWCQLTGALATAC--GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW  331 (345)
T ss_dssp             CEEEEEECTTTCCEEEEE--TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             cEEEEEEecCCCEEEEEe--CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence            899999999999999999  669999998542                              12 357799999999999


Q ss_pred             cccCCC
Q 010784          489 GPQCYS  494 (501)
Q Consensus       489 ~~~~~~  494 (501)
                      ++....
T Consensus       332 ~~~~~~  337 (345)
T 3fm0_A          332 KYQRPE  337 (345)
T ss_dssp             EECC--
T ss_pred             EecCCC
Confidence            987543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.3e-39  Score=301.86  Aligned_cols=317  Identities=15%  Similarity=0.173  Sum_probs=260.6

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      +..++.+++++|+|.+++++..++.+.+|......+.. ...+|.+.|++++|+|             ++++|++++ ||
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~-------------~~~~l~~~~-dg   72 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI-NTLNHGEVVCAVTISN-------------PTRHVYTGG-KG   72 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE-EEECCSSCCCEEEECS-------------SSSEEEEEC-BS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc-eeccCCCceEEEEEec-------------CCcEEEEcC-CC
Confidence            44569999999999999998887777777665543333 3448999999999999             889999999 99


Q ss_pred             ceEEec--CCce---eeecc--CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          189 SIRLWW--KGSC---QRCFK--GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       189 ~i~vwd--~~~~---~~~~~--~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                      .|++||  .+..   +..+.  .|...|.+++|+    +++++|++|+.||.|++||+.++..    .....+..|...|
T Consensus        73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~i  144 (337)
T 1gxr_A           73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL----PDGCTLIVGGEASTLSIWDLAAPTP----RIKAELTSSAPAC  144 (337)
T ss_dssp             EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC----TTSSEEEEEESSSEEEEEECCCC------EEEEEEECSSSCE
T ss_pred             eEEEEECCCCCceeeeecccccCCCCcEEEEEEc----CCCCEEEEEcCCCcEEEEECCCCCc----ceeeecccCCCce
Confidence            999998  3332   22232  799999999997    8999999999999999999988652    2356677899999


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEE--Ee-CCcEEEEEcCCCceE
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYI--AS-GSSVVTIDLRTMQKV  338 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~~~d~~~~~~~  338 (501)
                      .+++|+| +++++++++.||.|++||+++++......     .+...+.++.++++...+  +. ++.+++||+++++.+
T Consensus       145 ~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          145 YALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL  218 (337)
T ss_dssp             EEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeee-----cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE
Confidence            9999998 78899999999999999999876543322     345567777776654333  33 358999999999888


Q ss_pred             eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784          339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN  416 (501)
Q Consensus       339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~  416 (501)
                      ..+. +...+.+++|+|+++++++++.++ |++||+++.+.       ..+..|...|.+++|+|+ +++++++.||.|+
T Consensus       219 ~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  290 (337)
T 1gxr_A          219 QQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             EEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-------EEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-------EEEcCCccceeEEEECCCCCEEEEecCCCcEE
Confidence            7765 678899999999999999999888 99999998653       467789999999999999 8888889999999


Q ss_pred             EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +||+.+++.+...      .|...+.+++|+|++++|++++  .||.|++|++.
T Consensus       291 ~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~  336 (337)
T 1gxr_A          291 AWRTPYGASIFQS------KESSSVLSCDISVDDKYIVTGS--GDKKATVYEVI  336 (337)
T ss_dssp             EEETTTCCEEEEE------ECSSCEEEEEECTTSCEEEEEE--TTSCEEEEEEE
T ss_pred             EEECCCCeEEEEe------cCCCcEEEEEECCCCCEEEEec--CCCeEEEEEEe
Confidence            9999998887554      3577899999999999999999  66999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.6e-39  Score=334.18  Aligned_cols=352  Identities=14%  Similarity=0.144  Sum_probs=287.6

Q ss_pred             eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      ....+..|...|++++|+|++.++++|+.+|.|++||+.++ +.+..+.+|.+.|++++|+|             ++++|
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-------------~~~~l   70 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-VEVRSIQVTETPVRAGKFIA-------------RKNWI   70 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEG-------------GGTEE
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceEEEEecCCCcEEEEEEeC-------------CCCEE
Confidence            34567788999999999999999999999999999999985 78889999999999999999             89999


Q ss_pred             EEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          182 VTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       182 ~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      ++|+.||.|++||  +++.+..+.+|.+.|++++|+    +++++|++|+.||.|++||+.++..     ....+.+|..
T Consensus        71 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~  141 (814)
T 3mkq_A           71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH----PTKPYVLSGSDDLTVKLWNWENNWA-----LEQTFEGHEH  141 (814)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----SSSSEEEEEETTSEEEEEEGGGTSE-----EEEEEECCSS
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEe----CCCCEEEEEcCCCEEEEEECCCCce-----EEEEEcCCCC
Confidence            9999999999999  788888999999999999997    8999999999999999999988743     5778889999


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC--CeEEEEe---CCcEEEEEcCC
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE--SMLYIAS---GSSVVTIDLRT  334 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~i~~~d~~~  334 (501)
                      .|.+++|+|.++..+++++.||.|++||+.++........    .....+..+.+.+  +..++++   ++.+.+||+++
T Consensus       142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  217 (814)
T 3mkq_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT----GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (814)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC----CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec----CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            9999999986788999999999999999987754332221    2224455566554  4433332   24899999999


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e--EEEEec
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K--IVTGGR  410 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~--~l~~gs  410 (501)
                      ++.+..+.+|...|.+++|+|++.++++++.|+ |++||+.+++..      ..+..|...+.+++|+|+ .  +++++ 
T Consensus       218 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~-  290 (814)
T 3mkq_A          218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE------KTLNVGLERSWCIATHPTGRKNYIASG-  290 (814)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE------EEECCSSSSEEEEEECTTCGGGEEEEE-
T ss_pred             CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------EEeecCCCcEEEEEEccCCCceEEEEE-
Confidence            999999999999999999999999999999888 999999986654      788888999999999998 3  57766 


Q ss_pred             CCCcEEEEeCCCccccccccc--------------------------------------CCCCCCCcceeeeEeeccccE
Q 010784          411 DDLRINIWETDTGMLANSLLC--------------------------------------NYPEEADISTGCSAMAVSGCR  452 (501)
Q Consensus       411 ~dg~i~iwd~~~~~~~~~~~~--------------------------------------~~~~~~~~~v~~~~~s~~g~~  452 (501)
                      .++.+.+|++..+.....+..                                      .....+...+.+++|+|+|++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  370 (814)
T 3mkq_A          291 FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRF  370 (814)
T ss_dssp             ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSE
T ss_pred             eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCE
Confidence            677799998765432221110                                      000123445788999999999


Q ss_pred             EEEeecCCCceEEEeecc----------------CCccceeecCCCCceeeecc
Q 010784          453 IVTASYGEPGLLQFRDFS----------------NATCPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       453 l~s~~~d~~g~i~~w~~~----------------~~~~~~~s~~~d~~~~~w~~  490 (501)
                      +++++ +  +.+.+|++.                +++..+++++.++.+++|+.
T Consensus       371 la~~~-~--~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~  421 (814)
T 3mkq_A          371 VTVVG-D--GEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKN  421 (814)
T ss_dssp             EEEEE-T--TEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEET
T ss_pred             EEEec-C--CEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC
Confidence            99886 3  788888843                34566778888888888854

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-39  Score=309.01  Aligned_cols=299  Identities=11%  Similarity=0.047  Sum_probs=244.8

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-----ccceecccCCcceeEEEeeccCcCcccccCCCCc-
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-----YYRATLSDHKARITCMRLFPLHETSLFRSEPQRT-  177 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-----~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~-  177 (501)
                      ..+..|..+|++++|+|  .++++|+.|+.|++|++.++.     .....+.+|...|++++|+|             + 
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------~~   74 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-------------AI   74 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-------------EE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-------------cc
Confidence            34456888899999999  799999999999999999852     26788889999999999999             7 


Q ss_pred             ---C---cEEEEeeCCCceEEec--CCce-----eeeccCC-----CCceEEEEeeecCCCCCCE-EEEeeCCCcEEEEe
Q 010784          178 ---E---NVLVTSSCDHSIRLWW--KGSC-----QRCFKGH-----NGPVSTLSDKLLGDGSGKI-LASGGEDATVRLWS  238 (501)
Q Consensus       178 ---~---~~l~s~~~dg~i~vwd--~~~~-----~~~~~~h-----~~~v~~l~~s~~~~~~~~~-l~sg~~dg~i~iwd  238 (501)
                         +   ++|++++.||.|++||  .+..     +..+..|     ...|.+++|++...+++++ |++|+.||.|++||
T Consensus        75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  154 (397)
T 1sq9_A           75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  154 (397)
T ss_dssp             ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence               8   9999999999999999  5554     7778888     5999999996322267889 99999999999999


Q ss_pred             ccC------CCccccccceeec-------cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceec
Q 010784          239 LSS------SGKRGQQALKATL-------YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV  305 (501)
Q Consensus       239 ~~~------~~~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~  305 (501)
                      +.+      +.... ......+       ..|...|.+++|+| ++ ++++++.||.|++||+++++.            
T Consensus       155 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~------------  219 (397)
T 1sq9_A          155 FHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRP------------  219 (397)
T ss_dssp             EESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEE------------
T ss_pred             CCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCce------------
Confidence            998      44200 0001144       45889999999998 66 999999999999999987632            


Q ss_pred             CCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc---C---CCcEEEEEEcCCCcEEEEEcCC---c-EEEEecCC
Q 010784          306 PGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI---C---KPILHSFSIMPSKSLICTGGIG---K-AMTWDIRR  375 (501)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~---~~~v~~v~~~~~~~~l~~~~~d---~-i~iwd~~~  375 (501)
                                                      +..+..   |   ...|.+++|+|++++|++++.+   + |++||+++
T Consensus       220 --------------------------------~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~  267 (397)
T 1sq9_A          220 --------------------------------LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF  267 (397)
T ss_dssp             --------------------------------EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             --------------------------------eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence                                            234444   7   8899999999999999999988   7 99999998


Q ss_pred             CCCCCCCCCcccccC-------------cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCC-CCC---
Q 010784          376 SQDAVKPQPMAELDG-------------HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP-EEA---  437 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~-~~~---  437 (501)
                      ++..      ..+.+             |...|.+++|+|+ ++|++++.||.|++||+.+++.+..+..... ..|   
T Consensus       268 ~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  341 (397)
T 1sq9_A          268 GERI------GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED  341 (397)
T ss_dssp             CCEE------EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred             Cccc------ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh
Confidence            6554      77777             9999999999999 8999999999999999999999988851100 033   


Q ss_pred             ------------CcceeeeEeeccc----------cEEEEeecCCCceEEEeeccCC
Q 010784          438 ------------DISTGCSAMAVSG----------CRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       438 ------------~~~v~~~~~s~~g----------~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                                  ...|.+++|+|+|          ++|++++  .||.|++|++..+
T Consensus       342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~g  396 (397)
T 1sq9_A          342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC--LDRSIRWFREAGG  396 (397)
T ss_dssp             CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE--TTTEEEEEEEEC-
T ss_pred             hhccccccccccCCceeEEEeccccccccccccccceEEEec--CCCcEEEEEcCCC
Confidence                        8899999999999          7999999  6699999998865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.7e-39  Score=301.27  Aligned_cols=298  Identities=10%  Similarity=0.091  Sum_probs=239.6

Q ss_pred             eeeEEEecCCCCceEEeeCCc-EEEeecCC---eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784          102 LDVCFYSVAKPHDHILLDNND-IFSTQGSS---IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~~-~~~~~g~~---d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      ....+..|...|.+++|+|++ .++++|+.   |+.|++|++.++........+|.+.|++++|+|++          ++
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~   79 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATS----------LQ   79 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCC----------TT
T ss_pred             hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCC----------CC
Confidence            344556688899999999988 56678887   99999999998633333345899999999999921          01


Q ss_pred             CcEEEEeeCCCceEEec--CCc-eeeeccCCCCceEEEEeee--cCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee
Q 010784          178 ENVLVTSSCDHSIRLWW--KGS-CQRCFKGHNGPVSTLSDKL--LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA  252 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~-~~~~~~~h~~~v~~l~~s~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  252 (501)
                      +++|++|+.||.|++||  .++ .+..+.+|...|.++.|.+  ..++++++|++|+.||.|++||+.++..     ...
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-----~~~  154 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-----PVA  154 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-----CSE
T ss_pred             CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-----cce
Confidence            79999999999999999  455 7888999999999997753  2347899999999999999999998763     355


Q ss_pred             eccCCCC----ceeEEE----EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784          253 TLYGHEK----PIKLMS----VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       253 ~~~~~~~----~v~~l~----~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (501)
                      .+..|.+    .+.++.    |++ ++.++++++.||.|++||+++++.                               
T Consensus       155 ~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~-------------------------------  202 (357)
T 3i2n_A          155 NMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMAL-------------------------------  202 (357)
T ss_dssp             EECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEE-------------------------------
T ss_pred             eccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCce-------------------------------
Confidence            5555444    788888    455 788999999999999999988642                               


Q ss_pred             CcEEEEEcCCCceEeeeccCCCcEEEEEEcC---CCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc-----CcccCe
Q 010784          325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMP---SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD-----GHVGSV  395 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~---~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~-----~h~~~v  395 (501)
                                    .....|...|.+++|+|   ++.++++++.++ |++||+++.+..      ..+.     +|...|
T Consensus       203 --------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~v  262 (357)
T 3i2n_A          203 --------------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVSEKAHKSTV  262 (357)
T ss_dssp             --------------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEEEECCSSCE
T ss_pred             --------------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------cceeeeccCCCcCCE
Confidence                          12234678899999999   999999999888 999999986654      4443     899999


Q ss_pred             EEEEecCC-e-EEEEecCCCcEEEEeCCCcc-------------------cccccccCCCCCCCcceeeeEeeccccEEE
Q 010784          396 TQLHMDPY-K-IVTGGRDDLRINIWETDTGM-------------------LANSLLCNYPEEADISTGCSAMAVSGCRIV  454 (501)
Q Consensus       396 ~~l~~~~~-~-~l~~gs~dg~i~iwd~~~~~-------------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  454 (501)
                      ++++|+|+ . ++++|+.||.|++||+.++.                   .+..+     .+|...|.+++|+|+|++|+
T Consensus       263 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~  337 (357)
T 3i2n_A          263 WQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-----TLSTQPISSLDWSPDKRGLC  337 (357)
T ss_dssp             EEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-----ECCSSCEEEEEECSSSTTEE
T ss_pred             EEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-----ccCCCCeeEEEEcCCCCeEE
Confidence            99999999 5 89999999999999998653                   33444     45788999999999999998


Q ss_pred             -EeecCCCceEEEeeccCCc
Q 010784          455 -TASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       455 -s~~~d~~g~i~~w~~~~~~  473 (501)
                       +++  .||.|++|++....
T Consensus       338 ~s~~--~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          338 VCSS--FDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEE--TTSEEEEEEECC--
T ss_pred             EEec--CCCcEEEEECCCcc
Confidence             788  66999999998654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.5e-39  Score=301.43  Aligned_cols=298  Identities=14%  Similarity=0.126  Sum_probs=211.8

Q ss_pred             ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC------C
Q 010784          114 DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC------D  187 (501)
Q Consensus       114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------d  187 (501)
                      .-+.+.+++.++.+.+ +.....|++..     .....|...|++++|+|             ||++|++|+.      |
T Consensus         9 sg~d~g~~~~~~~~~g-~~~~~~w~~p~-----~~p~~H~~~V~~v~fSp-------------DG~~las~s~d~~~~wd   69 (357)
T 4g56_B            9 SGVDLGTENLYFQSNG-SSKGSAWGRPV-----TAPACMEVQIGAVRYRR-------------DGALLLAASSLSSRTWG   69 (357)
T ss_dssp             -------------------------------------CCCSEEEEEEECS-------------SSCEEEEEECSSSSSCC
T ss_pred             cCCCCCccceEEecCC-CccccccCCCC-----CCcccccCCEEEEEECC-------------CCCEEEEEcCCCCcccc
Confidence            3344455565655444 56678888654     23457999999999999             8999999997      6


Q ss_pred             CceEEec--CCce----eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          188 HSIRLWW--KGSC----QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       188 g~i~vwd--~~~~----~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                      +.|++|+  .+..    .....+|...|.+++|+    +++. +++++.||+|++||+.+++...  .......+|...|
T Consensus        70 ~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s----~d~~-~l~~s~dg~v~lWd~~~~~~~~--~~~~~~~~h~~~V  142 (357)
T 4g56_B           70 GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWV----SEKG-ILVASDSGAVELWEILEKESLL--VNKFAKYEHDDIV  142 (357)
T ss_dssp             EEEEEESSCC---CGGGCSEEEECSSCEEEEEEE----TTTE-EEEEETTSCEEEC--------C--CCCEEECCCSSCE
T ss_pred             CeEEEEECCCCCcceeEecccCCCCCCEEEEEEc----CCCC-EEEEECCCEEEEeeccccceeE--EEeeccCCCCCCE
Confidence            7888897  3322    23345689999999998    6664 5567889999999998875311  1123345799999


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      ++++|+| ++++|++|+.|+.|++||+++++                                            .+..+
T Consensus       143 ~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~--------------------------------------------~~~~~  177 (357)
T 4g56_B          143 KTLSVFS-DGTQAVSGGKDFSVKVWDLSQKA--------------------------------------------VLKSY  177 (357)
T ss_dssp             EEEEECS-SSSEEEEEETTSCEEEEETTTTE--------------------------------------------EEEEE
T ss_pred             EEEEECC-CCCEEEEEeCCCeEEEEECCCCc--------------------------------------------EEEEE
Confidence            9999998 78899999999999999998763                                            34556


Q ss_pred             ccCCCcEEEEEEcCCC-cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEE
Q 010784          342 AICKPILHSFSIMPSK-SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINI  417 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~i  417 (501)
                      .+|...|++++|+|++ .++++++.|+ |++||+++++..    ....+..|...+++++|+|+  .++++|+.|+.|++
T Consensus       178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~  253 (357)
T 4g56_B          178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL  253 (357)
T ss_dssp             CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEE
T ss_pred             cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeeeeccccccccchhhhhcccceEEEeecccceeE
Confidence            7799999999999986 4788888888 999999987654    12334457788999999997  78999999999999


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccc-cEEEEeecCCCceEEEeecc--------------------C-Cccc
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQFRDFS--------------------N-ATCP  475 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~~w~~~--------------------~-~~~~  475 (501)
                      ||+++++.+.++     .+|...|++++|+|++ ++|++|+  .|+.|++||+.                    + ++..
T Consensus       254 wd~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~~lasgs--~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~  326 (357)
T 4g56_B          254 VNIKNPDSAQTS-----AVHSQNITGLAYSYHSSPFLASIS--EDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSK  326 (357)
T ss_dssp             EESSCGGGCEEE-----CCCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTE
T ss_pred             EECCCCcEeEEE-----eccceeEEEEEEcCCCCCEEEEEe--CCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCE
Confidence            999999999988     5678899999999997 5789998  66999999954                    2 3456


Q ss_pred             eeecCCCCceeeecccCC
Q 010784          476 VLKHEVQNDSKFWGPQCY  493 (501)
Q Consensus       476 ~~s~~~d~~~~~w~~~~~  493 (501)
                      +++++.|+.+++|++...
T Consensus       327 l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          327 FTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEEETTSCEEEEECC--
T ss_pred             EEEEcCCCeEEEEECCCC
Confidence            789999999999998654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.8e-39  Score=327.66  Aligned_cols=294  Identities=17%  Similarity=0.271  Sum_probs=243.0

Q ss_pred             eeEEEecCCCCceEEeeCCc-EEEeecCCeeeEEEEeccccc----ccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784          103 DVCFYSVAKPHDHILLDNND-IFSTQGSSIQNIKIDNFLSES----YYRATLSDHKARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       103 ~~~~~~~~~~i~~~~~~~~~-~~~~~g~~d~~i~vw~~~~~~----~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      ...+..|...|+++++++++ .++++|+.|+.|++|++.+..    .....+.+|...|++++|+|             +
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-------------~  441 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-------------D  441 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-------------T
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-------------C
Confidence            44677899999999999764 799999999999999987532    23567899999999999999             8


Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      +++|++|+.||+|+|||  ++..+..+.+|...|.+++|+    +++++|++|+.|++|++||......   ........
T Consensus       442 g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s----~~~~~l~s~s~D~~i~iwd~~~~~~---~~~~~~~~  514 (694)
T 3dm0_A          442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS----LDNRQIVSASRDRTIKLWNTLGECK---YTISEGGE  514 (694)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC----TTSSCEEEEETTSCEEEECTTSCEE---EEECSSTT
T ss_pred             CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEe----CCCCEEEEEeCCCEEEEEECCCCcc---eeeccCCC
Confidence            99999999999999999  777888999999999999997    8999999999999999999865431   11122235


Q ss_pred             CCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          256 GHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       256 ~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                      +|...|.+++|+|+. ...+++++.|+.|++||+++++                                          
T Consensus       515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~------------------------------------------  552 (694)
T 3dm0_A          515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK------------------------------------------  552 (694)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC------------------------------------------
T ss_pred             CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc------------------------------------------
Confidence            799999999999853 3689999999999999998763                                          


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD  412 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d  412 (501)
                        ....+.+|.+.|++++|+|++++|++|+.|+ |++||+++++.+      ..+.. ...|.+++|+|+ .+++++ .|
T Consensus       553 --~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~------~~~~~-~~~v~~~~~sp~~~~l~~~-~~  622 (694)
T 3dm0_A          553 --LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL------YSLEA-NSVIHALCFSPNRYWLCAA-TE  622 (694)
T ss_dssp             --EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE------ECCBC-SSCEEEEEECSSSSEEEEE-ET
T ss_pred             --EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE------EEecC-CCcEEEEEEcCCCcEEEEE-cC
Confidence              2345677999999999999999999999998 999999987654      55543 567999999999 777776 66


Q ss_pred             CcEEEEeCCCcccccccccCCC--------------CCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          413 LRINIWETDTGMLANSLLCNYP--------------EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       413 g~i~iwd~~~~~~~~~~~~~~~--------------~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +.|++||+++++.+..+..+..              ..+...+++++|+|+|++|++|+  .||.|++|++.
T Consensus       623 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs--~Dg~i~iW~i~  692 (694)
T 3dm0_A          623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY--TDGVIRVWGIG  692 (694)
T ss_dssp             TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEE--TTSEEEEEEC-
T ss_pred             CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEc--CCCeEEEEecc
Confidence            7799999999988777643211              01122478899999999999999  66999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.4e-39  Score=299.02  Aligned_cols=243  Identities=13%  Similarity=0.121  Sum_probs=205.0

Q ss_pred             EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccce----ecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRA----TLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~----~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      ...+..+|++++|++++. +++|+.||.|+|||+.++ +...    .+.+|.+.|++++|+|             ++++|
T Consensus        78 ~~~~~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~-~~~~~~~~~~~~H~~~V~~v~~sp-------------dg~~l  142 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGERG-ILVASDSGAVELWELDEN-ETLIVSKFCKYEHDDIVSTVSVLS-------------SGTQA  142 (344)
T ss_dssp             EEEESSCEEEEEEETTTE-EEEEETTSEEEEEEECTT-SSCEEEEEEEECCSSCEEEEEECT-------------TSSEE
T ss_pred             eeccCCCEEEEEEeCCCe-EEEEECCCEEEEEeccCC-CceeEeeccccCCCCCEEEEEECC-------------CCCEE
Confidence            344566799999999975 668899999999999886 3332    3458999999999999             89999


Q ss_pred             EEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCccccccceeec--cC
Q 010784          182 VTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQQALKATL--YG  256 (501)
Q Consensus       182 ~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~  256 (501)
                      ++|+.||+|++||  +++++..+.+|...|.+++|+    +++ .+|++|+.|++|++||+++++.      ...+  ..
T Consensus       143 ~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~----~~~~~~l~s~s~D~~v~iwd~~~~~~------~~~~~~~~  212 (344)
T 4gqb_B          143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS----PHKDSVFLSCSEDNRILLWDTRCPKP------ASQIGCSA  212 (344)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----SSCTTEEEEEETTSCEEEEETTSSSC------EEECC---
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec----CCCCCceeeeccccccccccccccce------eeeeecce
Confidence            9999999999999  788899999999999999997    555 5889999999999999998764      4444  34


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      |...+.+++|+|.++.+|++|+.||.|++||+++++.                                           
T Consensus       213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~-------------------------------------------  249 (344)
T 4gqb_B          213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC-------------------------------------------  249 (344)
T ss_dssp             -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-------------------------------------------
T ss_pred             eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE-------------------------------------------
Confidence            6667999999987888999999999999999987643                                           


Q ss_pred             eEeeeccCCCcEEEEEEcCCC-cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCC
Q 010784          337 KVMTPAICKPILHSFSIMPSK-SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDD  412 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~d  412 (501)
                       +..+.+|...|++++|+|++ ++|++|+.|+ |++||+++++.       ..+.+|.+.|++++|+|+  .++++|+.|
T Consensus       250 -~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-------~~~~~H~~~V~~v~~sp~~~~llas~s~D  321 (344)
T 4gqb_B          250 -VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-------FRSQAHRDFVRDATWSPLNHSLLTTVGWD  321 (344)
T ss_dssp             -CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-------EEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             -EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-------EEEcCCCCCEEEEEEeCCCCeEEEEEcCC
Confidence             34567899999999999997 6899999998 99999988653       467899999999999998  688899999


Q ss_pred             CcEEEEeCCCcc
Q 010784          413 LRINIWETDTGM  424 (501)
Q Consensus       413 g~i~iwd~~~~~  424 (501)
                      |+|++|++.+..
T Consensus       322 ~~v~~w~v~~~~  333 (344)
T 4gqb_B          322 HQVVHHVVPTEP  333 (344)
T ss_dssp             SCEEEEECCC--
T ss_pred             CeEEEEECCCCC
Confidence            999999998654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-38  Score=295.61  Aligned_cols=278  Identities=21%  Similarity=0.288  Sum_probs=217.4

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C-C--ceeeec-cC-CCCceEEEEeeec
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K-G--SCQRCF-KG-HNGPVSTLSDKLL  217 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~-~--~~~~~~-~~-h~~~v~~l~~s~~  217 (501)
                      +.+..+.+|.+.|++++|+|             +  +|++|+.||+|++|| . +  ..+..+ .+ |...|.+++|+  
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~-------------~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s--   67 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQ-------------G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR--   67 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEET-------------T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC--
T ss_pred             ccceeeccCCCceeeeccCC-------------C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC--
Confidence            56778899999999999998             4  999999999999999 2 2  344555 34 99999999997  


Q ss_pred             CCCCCCEEEEeeCCCcEEEEeccCCCcc-ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784          218 GDGSGKILASGGEDATVRLWSLSSSGKR-GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS  296 (501)
Q Consensus       218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~  296 (501)
                        |++++|++|+.|++|++||+...... ....+...+.+|...|.+++|+| ++++|++|+.|+.|++||++....   
T Consensus        68 --p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~---  141 (330)
T 2hes_X           68 --PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGE---  141 (330)
T ss_dssp             --TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCC---
T ss_pred             --CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCC---
Confidence              88999999999999999999643210 11235677889999999999998 788999999999999999954311   


Q ss_pred             eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784          297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~  375 (501)
                                                           ..+.+..+.+|...|.+++|+|++.+|++++.|+ |++||...
T Consensus       142 -------------------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~  184 (330)
T 2hes_X          142 -------------------------------------EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD  184 (330)
T ss_dssp             -------------------------------------CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred             -------------------------------------CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence                                                 1123456778999999999999999999999998 99999876


Q ss_pred             CCCCCCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEEEEeCCCc--------ccccccccCCCCCCCcceeee
Q 010784          376 SQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWETDTG--------MLANSLLCNYPEEADISTGCS  444 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~v~~~  444 (501)
                      +.    .+++..+.+|.+.|.+++|+|+   .++++|+.|++|++||+.++        .+...+.    ..|...|.++
T Consensus       185 ~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~v  256 (330)
T 2hes_X          185 DD----WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP----DVHKRQVYNV  256 (330)
T ss_dssp             TE----EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC----SCCSSCEEEE
T ss_pred             CC----eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc----cccccceEEE
Confidence            52    1245788999999999999997   57888899999999999765        2333332    2378899999


Q ss_pred             EeeccccEEEEeecCCCceEEEeeccCC---------------------------ccceeecCCCCceeeecccC
Q 010784          445 AMAVSGCRIVTASYGEPGLLQFRDFSNA---------------------------TCPVLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       445 ~~s~~g~~l~s~~~d~~g~i~~w~~~~~---------------------------~~~~~s~~~d~~~~~w~~~~  492 (501)
                      +|++++ +|++++  .||.|++|+...+                           +..+++++.|+.+++|+++.
T Consensus       257 ~~s~~~-~l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          257 AWGFNG-LIASVG--ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EECTTS-CEEEEE--TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEcCCC-EEEEEe--CCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            999765 889998  6699999985422                           23467899999999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-38  Score=297.12  Aligned_cols=293  Identities=14%  Similarity=0.185  Sum_probs=253.1

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ..+..|..+|++++|+|++.++++|+.|+.|++||+.++ +.+..+.+|.+.|++++|+|             ++++|++
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~-------------~~~~l~s   91 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDC-------------FTKYCVT   91 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-CEEEEECCCSSCEEEEEECT-------------TSSEEEE
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcC-------------CCCEEEE
Confidence            567778999999999999999999999999999999985 88889999999999999999             8899999


Q ss_pred             eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC-----CcEEEEeccCCCcccc-----ccce
Q 010784          184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED-----ATVRLWSLSSSGKRGQ-----QALK  251 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~-----~~~~  251 (501)
                      ++.||.|++||  +++.+..+. |...|.+++|+    ++++++++++.+     |.|++||+........     ....
T Consensus        92 ~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~----~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~  166 (369)
T 3zwl_B           92 GSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFS----PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI  166 (369)
T ss_dssp             EETTTEEEEEETTTCCEEEEEE-CSSCEEEEEEC----TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred             EeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEc----cCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence            99999999999  677777777 88999999997    899999999999     9999999987643111     1123


Q ss_pred             eeccCCCC--ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784          252 ATLYGHEK--PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT  329 (501)
Q Consensus       252 ~~~~~~~~--~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  329 (501)
                      ..+..|..  .+.+++|+| ++.+|++++.||.|++||+++..                                     
T Consensus       167 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-------------------------------------  208 (369)
T 3zwl_B          167 HKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNY-------------------------------------  208 (369)
T ss_dssp             EEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTT-------------------------------------
T ss_pred             eeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCc-------------------------------------
Confidence            44555666  899999998 78899999999999999998731                                     


Q ss_pred             EEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE
Q 010784          330 IDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT  407 (501)
Q Consensus       330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~  407 (501)
                            +.+..+..|...|.+++|+|++.+|++++.|+ |++||+++++..      ..+. +...+.+++|+|+ ++++
T Consensus       209 ------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~------~~~~-~~~~~~~~~~~~~~~~l~  275 (369)
T 3zwl_B          209 ------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL------KKYE-TDCPLNTAVITPLKEFII  275 (369)
T ss_dssp             ------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE------EEEE-CSSCEEEEEECSSSSEEE
T ss_pred             ------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee------eeec-CCCCceeEEecCCCceEE
Confidence                  23345666889999999999999999999888 999999987654      5555 6788999999999 8888


Q ss_pred             EecCCC--------------cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          408 GGRDDL--------------RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       408 ~gs~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      +++.++              .+++||..+++.+..+     .+|...|.+++|+|++++|++++  .||.|++|++..+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          276 LGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-----QGHFGPLNTVAISPQGTSYASGG--EDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEECCC-------------CEEEEEETTTCCEEEEE-----ECCSSCEEEEEECTTSSEEEEEE--TTSEEEEEEECHHH
T ss_pred             EeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-----ecccCcEEEEEECCCCCEEEEEc--CCCeEEEEECcccc
Confidence            877887              8999999999999988     56788999999999999999999  66999999998644

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.4e-39  Score=312.40  Aligned_cols=294  Identities=16%  Similarity=0.143  Sum_probs=227.6

Q ss_pred             eEEEecCCCCceEEeeC-CcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          104 VCFYSVAKPHDHILLDN-NDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      .....+...|+||+|+| ++.+||+|+.||.|+|||+.++. .....+.+|.+.|++|+|+|.            ++++|
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~------------~~~~l  180 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL------------NTNQF  180 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS------------CTTEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC------------CCCEE
Confidence            34556777899999998 56799999999999999998652 234456799999999999984            67899


Q ss_pred             EEeeCCCceEEec-CCceeeecc---CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          182 VTSSCDHSIRLWW-KGSCQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       182 ~s~~~dg~i~vwd-~~~~~~~~~---~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      +||+.||+|++|| .+.....+.   .+...+.+++|+    +++.+|++|+.||.|++||++..       .+..+.+|
T Consensus       181 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~g~~dg~i~~wd~~~~-------~~~~~~~h  249 (435)
T 4e54_B          181 YASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS----ASSRMVVTGDNVGNVILLNMDGK-------ELWNLRMH  249 (435)
T ss_dssp             EEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE----TTTTEEEEECSSSBEEEEESSSC-------BCCCSBCC
T ss_pred             EEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC----CCCCEEEEEeCCCcEeeeccCcc-------eeEEEecc
Confidence            9999999999999 544444433   334567889997    89999999999999999999754       36778899


Q ss_pred             CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784          258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  337 (501)
                      ...|.+++|+|.+..++++|+.|+.|++||+++.+....                                         
T Consensus       250 ~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-----------------------------------------  288 (435)
T 4e54_B          250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS-----------------------------------------  288 (435)
T ss_dssp             SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC-----------------------------------------
T ss_pred             cceEEeeeecCCCceEEEEecCcceeeEEecccccccce-----------------------------------------
Confidence            999999999986677899999999999999987643211                                         


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCccc------CeEEEEecCC-eEEEE-
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVG------SVTQLHMDPY-KIVTG-  408 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~------~v~~l~~~~~-~~l~~-  408 (501)
                      .....+|...|++++|+|+|.+|++++.|+ |++||+++++..      ..+..|..      .+....|+|. .++++ 
T Consensus       289 ~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (435)
T 4e54_B          289 FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP------LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG  362 (435)
T ss_dssp             CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE------EEECCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred             EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccc------eEEecccccccccceeEEEEEcCCCCEEEEE
Confidence            112345889999999999999999999998 999999987654      33333221      1223345554 33332 


Q ss_pred             -----------ecCCCcEEEEeCCCcccccccccCCCCCCCcceeee-EeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          409 -----------GRDDLRINIWETDTGMLANSLLCNYPEEADISTGCS-AMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       409 -----------gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                                 +..++.|++||..+++.+..+.    .+|...|.++ +|+|+|++|++|+   |+.|++|++..+..
T Consensus       363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~----~~~~~~v~s~~~fspdg~~lasg~---d~~i~iW~~~~gk~  433 (435)
T 4e54_B          363 RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY----DPESSGISSLNEFNPMGDTLASAM---GYHILIWSQQEART  433 (435)
T ss_dssp             CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC----CSSCCCCCCEEEECTTSSCEEEEC---SSEEEECCCC----
T ss_pred             EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe----CCCCCcEEEEEEECCCCCEEEEEc---CCcEEEEECCcCee
Confidence                       2345679999999999988874    4567778877 6999999999875   37899999987754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2e-38  Score=299.89  Aligned_cols=314  Identities=12%  Similarity=0.094  Sum_probs=251.0

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccc--cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY--YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      ..+..+|++++|+|++.++++|+.++.|++||+.++ +  ....+.+|...|++++|+|             ++++|+++
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~-------------~~~~l~~~   70 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAP-------------DSNRIVTC   70 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEET-------------TTTEEEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeC-------------CCCEEEEE
Confidence            346788999999999999999999999999999875 4  7888999999999999999             88999999


Q ss_pred             eCCCceEEec--CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784          185 SCDHSIRLWW--KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP  260 (501)
Q Consensus       185 ~~dg~i~vwd--~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  260 (501)
                      +.||.|++||  .++..  ..+..|...|.+++|+    +++++|++|+.||.|++||++.+..  ..........|...
T Consensus        71 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~  144 (372)
T 1k8k_C           71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA----PNEKKFAVGSGSRVISICYFEQEND--WWVCKHIKKPIRST  144 (372)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC----TTSSEEEEEETTSSEEEEEEETTTT--EEEEEEECTTCCSC
T ss_pred             cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC----CCCCEEEEEeCCCEEEEEEecCCCc--ceeeeeeecccCCC
Confidence            9999999999  44433  3446799999999997    8899999999999999999998652  00112334678999


Q ss_pred             eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEee
Q 010784          261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMT  340 (501)
Q Consensus       261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  340 (501)
                      |.+++|+| ++.+|++++.||.|++||++.........        .....                  .....++.+..
T Consensus       145 i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--------~~~~~------------------~~~~~~~~~~~  197 (372)
T 1k8k_C          145 VLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPA--------PTPWG------------------SKMPFGELMFE  197 (372)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCC--------CBTTB------------------SCCCTTCEEEE
T ss_pred             eeEEEEcC-CCCEEEEEcCCCCEEEEEccccccccccc--------ccccc------------------cccchhhheEe
Confidence            99999998 78899999999999999987543211000        00000                  01223456677


Q ss_pred             eccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEE
Q 010784          341 PAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIW  418 (501)
Q Consensus       341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iw  418 (501)
                      +..|...|.+++|+|++++|++++.|+ |++||+++++.+      ..+..|...|++++|+|+ .++++| .|+.|++|
T Consensus       198 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~  270 (372)
T 1k8k_C          198 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV------ATLASETLPLLAVTFITESSLVAAG-HDCFPVLF  270 (372)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE------EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEE
T ss_pred             cCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee------EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEE
Confidence            778999999999999999999999998 999999986654      788899999999999999 888887 99999999


Q ss_pred             eCCC--cc--cccccc--------------------------------cCCCCCCCcceeeeEee-ccc---cEEEEeec
Q 010784          419 ETDT--GM--LANSLL--------------------------------CNYPEEADISTGCSAMA-VSG---CRIVTASY  458 (501)
Q Consensus       419 d~~~--~~--~~~~~~--------------------------------~~~~~~~~~~v~~~~~s-~~g---~~l~s~~~  458 (501)
                      ++.+  ++  .+..+.                                .....+|...|++++|. ++|   ++|++|+ 
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~-  349 (372)
T 1k8k_C          271 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG-  349 (372)
T ss_dssp             EEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEE-
T ss_pred             EccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEec-
Confidence            9987  42  111110                                11114788999999966 666   9999999 


Q ss_pred             CCCceEEEeeccCCccce
Q 010784          459 GEPGLLQFRDFSNATCPV  476 (501)
Q Consensus       459 d~~g~i~~w~~~~~~~~~  476 (501)
                       .||.|++|++..++..+
T Consensus       350 -~Dg~i~~W~~~~~~~~~  366 (372)
T 1k8k_C          350 -MDGGMSIWDVRSLESAL  366 (372)
T ss_dssp             -TTSEEEEEEHHHHHHHC
T ss_pred             -CCCceEEEEecChhHhh
Confidence             66999999998766543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.9e-39  Score=350.34  Aligned_cols=343  Identities=17%  Similarity=0.160  Sum_probs=289.9

Q ss_pred             ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      .+...+.+++|+|++.++++|+.++.+++|++.++ .....+.+|.+.|++++|+|             ++++|++++.|
T Consensus       838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~sp-------------dg~~l~s~s~d  903 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSP-------------DGSSFLTASDD  903 (1249)
T ss_dssp             SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEEEEEECT-------------TSSEEEEEETT
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceEEEEECC-------------CCCEEEEEeCC
Confidence            56777999999999999999999999999999985 78888999999999999999             89999999999


Q ss_pred             CceEEec-CC-ce-----------------------------ee--------eccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784          188 HSIRLWW-KG-SC-----------------------------QR--------CFKGHNGPVSTLSDKLLGDGSGKILASG  228 (501)
Q Consensus       188 g~i~vwd-~~-~~-----------------------------~~--------~~~~h~~~v~~l~~s~~~~~~~~~l~sg  228 (501)
                      |+|++|| .. ..                             +.        ....+...+.+++|+    ++++++++|
T Consensus       904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s----p~g~~l~~g  979 (1249)
T 3sfz_A          904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS----PHLEYVAFG  979 (1249)
T ss_dssp             SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC----TTSSEEEEE
T ss_pred             CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc----CCCCEEEEE
Confidence            9999998 11 00                             00        001235678999997    899999999


Q ss_pred             eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC
Q 010784          229 GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV  308 (501)
Q Consensus       229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  308 (501)
                      +.||.|++||+.++.      ....+.+|...|++++|+| ++.++++++.||.|++||+.+++...      .......
T Consensus       980 ~~~g~i~i~d~~~~~------~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~ 1046 (1249)
T 3sfz_A          980 DEDGAIKIIELPNNR------VFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVF------LQAHQET 1046 (1249)
T ss_dssp             ETTSCCEEEETTTTS------CEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEEC------CBCCSSC
T ss_pred             cCCCCEEEEEcCCCc------eeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceEE------EecCCCc
Confidence            999999999999876      4778889999999999998 78899999999999999999885432      2245566


Q ss_pred             ceeeecCCCeEEEEe--CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCc
Q 010784          309 PVDMKCHESMLYIAS--GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPM  385 (501)
Q Consensus       309 ~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~  385 (501)
                      +.++.+.++..+++.  ++.+++||+.+++....+.+|.+.|.+++|+|+++++++++.|+ |++||+.+++..      
T Consensus      1047 v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~------ 1120 (1249)
T 3sfz_A         1047 VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL------ 1120 (1249)
T ss_dssp             EEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS------
T ss_pred             EEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee------
Confidence            677777776655554  45999999999999999999999999999999999999999998 999999987654      


Q ss_pred             ccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccC----CCCCCCcceeeeEeeccccEEEEeecCC
Q 010784          386 AELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCN----YPEEADISTGCSAMAVSGCRIVTASYGE  460 (501)
Q Consensus       386 ~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~~d~  460 (501)
                      ..+.+|.+.|++++|+|+ +++++|+.||.|++||+.+++.+..+...    ....|...|++++|+|||++|++++   
T Consensus      1121 ~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--- 1197 (1249)
T 3sfz_A         1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--- 1197 (1249)
T ss_dssp             BCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES---
T ss_pred             eeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC---
Confidence            888899999999999999 99999999999999999999887765211    1135788899999999999999885   


Q ss_pred             CceEEEeeccC---------------------CccceeecCCCCceeeeccc
Q 010784          461 PGLLQFRDFSN---------------------ATCPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       461 ~g~i~~w~~~~---------------------~~~~~~s~~~d~~~~~w~~~  491 (501)
                       |.|++||+..                     ++..+++++.||.+.+|++.
T Consensus      1198 -g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1198 -GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             -SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred             -CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence             7999999553                     33457788899999999874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.7e-38  Score=288.25  Aligned_cols=272  Identities=22%  Similarity=0.357  Sum_probs=226.9

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~  220 (501)
                      .....++.+|.+.|++++|+|             ++++|++|+.||.|++|+  .++....+.+|...|.+++|+    +
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~-------------~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~----~   75 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSP-------------NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS----S   75 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECT-------------TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----T
T ss_pred             ceeEEEEcccCCcEEEEEECC-------------CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEc----C
Confidence            356677899999999999999             899999999999999999  677888899999999999997    8


Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      ++++|++|+.||.|++||+.++.      .+..+.+|...|.++.|+| ++++|++|+.|+.|++||+++++.       
T Consensus        76 ~~~~l~s~~~d~~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~-------  141 (312)
T 4ery_A           76 DSNLLVSASDDKTLKIWDVSSGK------CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKC-------  141 (312)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCC------EEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE-------
T ss_pred             CCCEEEEECCCCEEEEEECCCCc------EEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEE-------
Confidence            99999999999999999999876      4788899999999999998 788999999999999999987642       


Q ss_pred             cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                                                           +..+..|...|.+++|+|+++++++++.|+ |++||+++++..
T Consensus       142 -------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  184 (312)
T 4ery_A          142 -------------------------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL  184 (312)
T ss_dssp             -------------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             -------------------------------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Confidence                                                 345566889999999999999999999998 999999987643


Q ss_pred             CCCCCcccc-cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          380 VKPQPMAEL-DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       380 ~~~~~~~~~-~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                            ..+ ..+...+..++|+|+ +++++++.||.|++||+.+++.+..+..+...  ...+......+++.+|++|+
T Consensus       185 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~sg~  256 (312)
T 4ery_A          185 ------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGS  256 (312)
T ss_dssp             ------EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCS--SSCCCEEEECSSSCEEEECC
T ss_pred             ------eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCc--eEEEEEEEEeCCCcEEEEEC
Confidence                  333 355678999999999 88888899999999999999998888543211  11222223346789999999


Q ss_pred             cCCCceEEEeeccCC---------------------ccceeecC--CCCceeeecccC
Q 010784          458 YGEPGLLQFRDFSNA---------------------TCPVLKHE--VQNDSKFWGPQC  492 (501)
Q Consensus       458 ~d~~g~i~~w~~~~~---------------------~~~~~s~~--~d~~~~~w~~~~  492 (501)
                        .||.|++||+..+                     ...+++++  .|+.+++|+.++
T Consensus       257 --~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d~  312 (312)
T 4ery_A          257 --EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC  312 (312)
T ss_dssp             --TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECCC
T ss_pred             --CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCCC
Confidence              6699999996543                     33455554  799999998753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.7e-38  Score=300.17  Aligned_cols=290  Identities=14%  Similarity=0.101  Sum_probs=235.3

Q ss_pred             eeEEEecCCCCceEEeeCCc-EEEeecCCeeeEEEEecccccccceecc--cCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784          103 DVCFYSVAKPHDHILLDNND-IFSTQGSSIQNIKIDNFLSESYYRATLS--DHKARITCMRLFPLHETSLFRSEPQRTEN  179 (501)
Q Consensus       103 ~~~~~~~~~~i~~~~~~~~~-~~~~~g~~d~~i~vw~~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~  179 (501)
                      ...+..+...|++++|++++ .++++|+.|+.|++||+.++ +....+.  +|.+.|.+++|+|+            +++
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~------------~~~  132 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQGMGPGDAITGMKFNQF------------NTN  132 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCEEEECCCSTTCBEEEEEEETT------------EEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccceeeecCCcCCceeEEEeCCC------------CCC
Confidence            34566788889999999999 99999999999999999975 5555544  79999999999984            468


Q ss_pred             EEEEeeCCCceEEec-CCceeeeccC---CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          180 VLVTSSCDHSIRLWW-KGSCQRCFKG---HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       180 ~l~s~~~dg~i~vwd-~~~~~~~~~~---h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      +|++++.||.|++|| .+..+..+..   |...|.+++|+    +++++|++|+.||.|++||++ +.      .+..+.
T Consensus       133 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~i~i~d~~-~~------~~~~~~  201 (383)
T 3ei3_B          133 QLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS----VSRQMLATGDSTGRLLLLGLD-GH------EIFKEK  201 (383)
T ss_dssp             EEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE----TTTTEEEEEETTSEEEEEETT-SC------EEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC----CCCCEEEEECCCCCEEEEECC-CC------EEEEec
Confidence            999999999999999 5566666544   45889999998    899999999999999999994 33      477888


Q ss_pred             CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784          256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM  335 (501)
Q Consensus       256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  335 (501)
                      +|...|.+++|+|.+..++++++.|+.|++||+++.+..                                        +
T Consensus       202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------------------------------------~  241 (383)
T 3ei3_B          202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK----------------------------------------N  241 (383)
T ss_dssp             CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST----------------------------------------T
T ss_pred             cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc----------------------------------------c
Confidence            999999999999844449999999999999999875321                                        1


Q ss_pred             ceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-------c----------cCeE
Q 010784          336 QKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-------V----------GSVT  396 (501)
Q Consensus       336 ~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-------~----------~~v~  396 (501)
                      ..+..+ .|...|.+++|+| ++.+|++++.|+ |++||+++++..      ..+.+|       .          +.+.
T Consensus       242 ~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~p~~~~~  314 (383)
T 3ei3_B          242 SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP------DQIIIHPHRQFQHLTPIKATWHPMYDLI  314 (383)
T ss_dssp             CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC------SEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred             ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc------cccccccccccccccceEEeccCCCCce
Confidence            122233 5889999999999 999999999888 999999987654      333322       2          3444


Q ss_pred             EEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          397 QLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       397 ~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      .++++|+ ++  +|+.||.|++||+.+++.+.++..+   .+...+..++|+|+|++|++|+ |  |.|++|+++.
T Consensus       315 ~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~---~~~~~~~~~~~s~~g~~l~s~s-d--~~i~iw~~~~  382 (383)
T 3ei3_B          315 VAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP---NAAGIISLNKFSPTGDVLASGM-G--FNILIWNRED  382 (383)
T ss_dssp             EEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT---TBCSCCCEEEECTTSSEEEEEE-T--TEEEEEECC-
T ss_pred             EEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC---CCCceEEEEEEecCccEEEEec-C--CcEEEEecCC
Confidence            5667777 55  6679999999999999999988532   2456778889999999999996 4  9999999874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.9e-38  Score=320.59  Aligned_cols=333  Identities=14%  Similarity=0.168  Sum_probs=255.5

Q ss_pred             EEEecCCCCceEEeeCCcE-EEeecCCeeeEEEEecccccccceecccCCc---ceeEEEeeccCcCcccccCCCCc-Cc
Q 010784          105 CFYSVAKPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSESYYRATLSDHKA---RITCMRLFPLHETSLFRSEPQRT-EN  179 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~~~~~~~~~~~-~~  179 (501)
                      .+..+...|++++|+|++. ++++|+.|+.+++||..++ +....+.+|.+   .|++++|+|             + ++
T Consensus       155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~  220 (615)
T 1pgu_A          155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSP-------------DSGE  220 (615)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECS-------------TTCC
T ss_pred             eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-ceeeeecccCCCCceEEEEEECC-------------CCCC
Confidence            3445677799999999998 8999999999999999985 88889999999   999999999             7 89


Q ss_pred             EEEEeeCCCceEEec--CCceeeec-c---CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc------
Q 010784          180 VLVTSSCDHSIRLWW--KGSCQRCF-K---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ------  247 (501)
Q Consensus       180 ~l~s~~~dg~i~vwd--~~~~~~~~-~---~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~------  247 (501)
                      +|++++.||.|++||  +++.+..+ .   .|...|.+++|    . ++++|++++.||.|++||+.+++....      
T Consensus       221 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~----~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  295 (615)
T 1pgu_A          221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW----L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  295 (615)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE----S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEE----c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC
Confidence            999999999999999  67778888 6   89999999999    3 788999999999999999986542000      


Q ss_pred             ---------------------------------ccceeeccCCCCceeEEEEeec-------------------------
Q 010784          248 ---------------------------------QALKATLYGHEKPIKLMSVAGH-------------------------  269 (501)
Q Consensus       248 ---------------------------------~~~~~~~~~~~~~v~~l~~~~~-------------------------  269 (501)
                                                       ...+..+.+|...|.+++| |+                         
T Consensus       296 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~  374 (615)
T 1pgu_A          296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNL  374 (615)
T ss_dssp             CGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSC
T ss_pred             cccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCc
Confidence                                             1122333444444544444 31                         


Q ss_pred             -------CCeEEEEEeCCCeEEEEECCCCcccc----------------------------ceecccceecCCCceeeec
Q 010784          270 -------KSFLLVTISKDSKVRVWDTSTSSAVR----------------------------SSCCVGMTSVPGVPVDMKC  314 (501)
Q Consensus       270 -------~~~~l~s~s~dg~v~vwd~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~  314 (501)
                             ++..+++++.|+.|++||+.+++...                            .............+.++.+
T Consensus       375 v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (615)
T 1pgu_A          375 IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL  454 (615)
T ss_dssp             EEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred             eEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE
Confidence                   12334444444444444443221100                            0000011122333444555


Q ss_pred             CCCeEEEEe--CCcEEEEEcCCCceE-eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC
Q 010784          315 HESMLYIAS--GSSVVTIDLRTMQKV-MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG  390 (501)
Q Consensus       315 ~~~~~~~~~--~~~i~~~d~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  390 (501)
                      ++..++.+.  ++.+++||+.+++.. ..+..|...|.+++|+|++++|++++.|+ |++||+.+++..      ..+.+
T Consensus       455 ~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~------~~~~~  528 (615)
T 1pgu_A          455 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK------TSRWA  528 (615)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE------ECCSC
T ss_pred             cCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce------eEeec
Confidence            555555555  468999999988766 67778999999999999999999999988 999999987654      67777


Q ss_pred             -cccCeEEEEecC----------C-eEEEEecCCCcEEEEeCCCc-ccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          391 -HVGSVTQLHMDP----------Y-KIVTGGRDDLRINIWETDTG-MLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       391 -h~~~v~~l~~~~----------~-~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                       |...|++++|+|          + +++++++.||.|++||+.++ +++..+     .+|...|.+++|+|+++ |++++
T Consensus       529 ~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----~~h~~~v~~l~~s~~~~-l~s~~  602 (615)
T 1pgu_A          529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-----NAHKDGVNNLLWETPST-LVSSG  602 (615)
T ss_dssp             CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-----TSSTTCEEEEEEEETTE-EEEEE
T ss_pred             CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh-----hcCccceEEEEEcCCCC-eEEec
Confidence             999999999999          8 99999999999999999997 777777     57788999999999999 99999


Q ss_pred             cCCCceEEEeeccC
Q 010784          458 YGEPGLLQFRDFSN  471 (501)
Q Consensus       458 ~d~~g~i~~w~~~~  471 (501)
                        .||.|++|++..
T Consensus       603 --~d~~v~iw~~~~  614 (615)
T 1pgu_A          603 --ADACIKRWNVVL  614 (615)
T ss_dssp             --TTSCEEEEEEC-
T ss_pred             --CCceEEEEeeec
Confidence              669999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4e-38  Score=287.60  Aligned_cols=260  Identities=19%  Similarity=0.189  Sum_probs=211.8

Q ss_pred             ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C---CceeeeccCCCCceEEEEeeecCCCC
Q 010784          146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K---GSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~---~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      +..+.+|.+.|++++|+|             +|++|++|+.|++|+||| .   .+.+.++.+|.++|.+++|++  +.+
T Consensus         2 ~~~~~~h~~~V~~~~~s~-------------~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~--~~~   66 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDY-------------YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH--PKF   66 (297)
T ss_dssp             CEECCSCSSCEEEEEECT-------------TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECC--GGG
T ss_pred             ceeccCCcCceEEEEECC-------------CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecC--CCc
Confidence            346789999999999999             899999999999999998 2   356788999999999999962  124


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      +++|++|+.||+|++||+.++..    ..+..+.+|...|.+++|+|+. +.+|++++.|+.|++||++++...      
T Consensus        67 g~~l~s~s~D~~v~iWd~~~~~~----~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~------  136 (297)
T 2pm7_B           67 GTILASCSYDGKVMIWKEENGRW----SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT------  136 (297)
T ss_dssp             CSEEEEEETTTEEEEEEBSSSCB----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB------
T ss_pred             CCEEEEEcCCCEEEEEEcCCCce----EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce------
Confidence            78999999999999999987641    1356677899999999999842 679999999999999999875311      


Q ss_pred             cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-------------CcEEEEEcCCc
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-------------KSLICTGGIGK  367 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-------------~~~l~~~~~d~  367 (501)
                                                          ....+.+|...|.+++|+|+             +++|++|+.|+
T Consensus       137 ------------------------------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~  180 (297)
T 2pm7_B          137 ------------------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN  180 (297)
T ss_dssp             ------------------------------------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTS
T ss_pred             ------------------------------------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC
Confidence                                                01234568889999999996             57999999998


Q ss_pred             -EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC----eEEEEecCCCcEEEEeCCCccc--c-cccccCCCCCCCc
Q 010784          368 -AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY----KIVTGGRDDLRINIWETDTGML--A-NSLLCNYPEEADI  439 (501)
Q Consensus       368 -i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~~gs~dg~i~iwd~~~~~~--~-~~~~~~~~~~~~~  439 (501)
                       |++||+++++..  ......+.+|...|++++|+|+    .++++++.|++|++||+.++..  . ..+.   ...|..
T Consensus       181 ~v~lwd~~~~~~~--~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~---~~~~~~  255 (297)
T 2pm7_B          181 LVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK---EEKFPD  255 (297)
T ss_dssp             CEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS---SSCCSS
T ss_pred             cEEEEEEcCCCce--EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeee---cccCCC
Confidence             999999876532  1234678899999999999996    7899999999999999987431  1 1121   134677


Q ss_pred             ceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      .|.+++|+|+|++|++++  .|+.|++|+....+
T Consensus       256 ~v~~~~~s~~g~~las~~--~D~~v~lw~~~~~g  287 (297)
T 2pm7_B          256 VLWRASWSLSGNVLALSG--GDNKVTLWKENLEG  287 (297)
T ss_dssp             CEEEEEECSSSCCEEEEE--TTSCEEEEEECTTS
T ss_pred             cEEEEEECCCCCEEEEEc--CCCcEEEEEECCCC
Confidence            899999999999999999  66999999987543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-38  Score=302.37  Aligned_cols=265  Identities=14%  Similarity=0.111  Sum_probs=208.3

Q ss_pred             EEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      +..+..+|++++|+|++.++++|+.|+.|++|++.++. +....+.+|.+.|++++|+|             ++++|++|
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-------------~~~~l~s~   73 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-------------KSNRIVTC   73 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-------------TTCCEEEE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-------------CCCEEEEE
Confidence            34456789999999999999999999999999999743 67888999999999999999             88999999


Q ss_pred             eCCCceEEec--CCc---eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC-CC
Q 010784          185 SCDHSIRLWW--KGS---CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG-HE  258 (501)
Q Consensus       185 ~~dg~i~vwd--~~~---~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~  258 (501)
                      +.||+|++||  .+.   ....+.+|...|.+++|+    +++++|++|+.|+.|++||++++..   ......+.. |.
T Consensus        74 s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~h~  146 (377)
T 3dwl_C           74 SQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS----PNEDKFAVGSGARVISVCYFEQEND---WWVSKHLKRPLR  146 (377)
T ss_dssp             ETTSSEEEC------CCCCEEECCCCSSCEEEEECC----TTSSCCEEEESSSCEEECCC--------CCCCEEECSSCC
T ss_pred             eCCCeEEEEEcCCCCceeeeeEecccCCceEEEEEC----CCCCEEEEEecCCeEEEEEECCccc---ceeeeEeecccC
Confidence            9999999999  433   567778899999999997    7899999999999999999988652   113556666 99


Q ss_pred             CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784          259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV  338 (501)
Q Consensus       259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  338 (501)
                      ..|.+++|+| ++.+|++++.|+.|++||++..........    ...+.                      .+..++.+
T Consensus       147 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~----------------------~~~~~~~~  199 (377)
T 3dwl_C          147 STILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEA----SVWGS----------------------RLPFNTVC  199 (377)
T ss_dssp             SCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCS----CSSCS----------------------CCCEEEEE
T ss_pred             CCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccc----ccccc----------------------ccchhhhh
Confidence            9999999998 788999999999999999976542111000    00000                      00123445


Q ss_pred             eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784          339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN  416 (501)
Q Consensus       339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~  416 (501)
                      ..+ .|...|.+++|+|++++|++++.|+ |++||+++++..  ...+..+.+|...|.+++|+|+ +++++|+.++.+ 
T Consensus       200 ~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-  275 (377)
T 3dwl_C          200 AEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP--PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-  275 (377)
T ss_dssp             ECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC--EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-
T ss_pred             hcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc--ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-
Confidence            556 7899999999999999999999988 999999997652  1124788899999999999999 999998665555 


Q ss_pred             EEeCC
Q 010784          417 IWETD  421 (501)
Q Consensus       417 iwd~~  421 (501)
                      +|+..
T Consensus       276 ~~~~~  280 (377)
T 3dwl_C          276 LLQGN  280 (377)
T ss_dssp             EECCC
T ss_pred             EEEeC
Confidence            77665

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-39  Score=311.86  Aligned_cols=328  Identities=11%  Similarity=0.081  Sum_probs=233.4

Q ss_pred             EecCCCCceEEeeCCc---------EEEee-------------------cCCeeeEEEEeccccccc---ceecccCCcc
Q 010784          107 YSVAKPHDHILLDNND---------IFSTQ-------------------GSSIQNIKIDNFLSESYY---RATLSDHKAR  155 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~---------~~~~~-------------------g~~d~~i~vw~~~~~~~~---~~~~~~h~~~  155 (501)
                      +..+.+|.+|+|+|++         .++|+                   |+.|++|+||++.++...   ..++.+|.+.
T Consensus       130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~  209 (524)
T 2j04_B          130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGE  209 (524)
T ss_dssp             EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCS
T ss_pred             EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCc
Confidence            3356779999999876         66666                   557899999999875221   2446788899


Q ss_pred             eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce-----------eeeccCCCCceEEEEeeecCCCCC
Q 010784          156 ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC-----------QRCFKGHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       156 V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~-----------~~~~~~h~~~v~~l~~s~~~~~~~  222 (501)
                      |++++|+|.+       ..++++.+||+|+.||+|+|||  .+..           ...+.+|...|++++|+    ++ 
T Consensus       210 V~~v~wsp~~-------~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s----~~-  277 (524)
T 2j04_B          210 VWDLKWHEGC-------HAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL----SP-  277 (524)
T ss_dssp             EEEEEECSSC-------CCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES----SS-
T ss_pred             EEEEEECCCC-------CCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec----CC-
Confidence            9999999931       1122468999999999999999  2321           23677899999999996    33 


Q ss_pred             CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE--EeecCC-eEEEEEeCCCeEEEEECCCCccccceec
Q 010784          223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS--VAGHKS-FLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~--~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                      ..|++|+.||+|++||++++..     +...+.+|...|.+++  +++ ++ .+|++|+.|++|++||+++++.......
T Consensus       278 ~~lasgs~DgtV~lWD~~~~~~-----~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~  351 (524)
T 2j04_B          278 TTVVCGFKNGFVAEFDLTDPEV-----PSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVS  351 (524)
T ss_dssp             SEEEEEETTSEEEEEETTBCSS-----CSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEE
T ss_pred             CeEEEEeCCCEEEEEECCCCCC-----ceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCccccccc
Confidence            5899999999999999997643     4566889999999994  454 55 8999999999999999998765332210


Q ss_pred             ccceecCCCceeeecCCCe-EEEEeC--CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784          300 VGMTSVPGVPVDMKCHESM-LYIASG--SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~  375 (501)
                         ......+.++.++++. .+++++  +.|++||++++..+..+.+|.+.|++++|+|++.+|++|+.|+ |++||+..
T Consensus       352 ---~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          352 ---RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             ---ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             ---ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence               0111235567777754 333332  3799999999998888999999999999999999999999999 99999865


Q ss_pred             CCCCCCCCCcccccC-----cccCeEEEEecCC-eEEEEecCCCcEEEEeCC-CcccccccccCCCCCCCcceeeeEeec
Q 010784          376 SQDAVKPQPMAELDG-----HVGSVTQLHMDPY-KIVTGGRDDLRINIWETD-TGMLANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                      . .      +..+..     +...|.+++|+|+ .++.. ..+  +++|+.. ++..+.++     .+|...|.+++|+|
T Consensus       429 ~-~------~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l-----~gh~~~V~~Vafsp  493 (524)
T 2j04_B          429 R-L------LHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS--YEVYPLTVNDVSKAKI-----DAHGINITCTKWNE  493 (524)
T ss_dssp             S-T------TTCC------CCCCEEEECBCCSSSCEEEE-CCC--CCCCC------------------CCCSCCCEEECC
T ss_pred             h-h------ccccccCccceeeeEEEEeccCCCCCeEEc-cCC--ceecccccCCcceeee-----cCCCceEEEEECCC
Confidence            3 1      122211     1225779999998 65533 222  3444443 46677777     56788999999999


Q ss_pred             ccc---EEEEeecCCCceEEEeeccCC
Q 010784          449 SGC---RIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       449 ~g~---~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      ++.   ++++|+  .+|.|+||++.-.
T Consensus       494 ~~~~~~~lAsg~--~~g~vrlw~l~~~  518 (524)
T 2j04_B          494 TSAGGKCYAFSN--SAGLLTLEYLSLE  518 (524)
T ss_dssp             STTTTTEEEEEC--TTSEEEEEECSCC
T ss_pred             CCCccHHHHhhc--cCceEEEEEcccc
Confidence            964   999998  6699999998753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-38  Score=287.91  Aligned_cols=283  Identities=15%  Similarity=0.189  Sum_probs=241.9

Q ss_pred             eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      ....+..|..+|+++++ +++.++++|+.|+.|++||+.++ +....+..|.+.|.+++|+|             ++++|
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~-------------~~~~l   74 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDS-------------EKELL   74 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS-EEEEEEEECSSCEEEEEEET-------------TTTEE
T ss_pred             HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC-EEEEEeecCCccEEEEEECC-------------CCCEE
Confidence            34567778889999999 89999999999999999999874 77888899999999999999             89999


Q ss_pred             EEeeCCCceEEec-----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          182 VTSSCDHSIRLWW-----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       182 ~s~~~dg~i~vwd-----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      ++|+.||.|++|+     ..+.+..+.+|...|.++.|      +++++++|+.||.|++||  .+.      ....+..
T Consensus        75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~l~~~~~d~~i~~~d--~~~------~~~~~~~  140 (313)
T 3odt_A           75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF------QDGVVISGSWDKTAKVWK--EGS------LVYNLQA  140 (313)
T ss_dssp             EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE------ETTEEEEEETTSEEEEEE--TTE------EEEEEEC
T ss_pred             EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe------cCCEEEEEeCCCCEEEEc--CCc------EEEeccc
Confidence            9999999999998     33557788899999999998      356999999999999999  222      4677888


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      |...+.++.+.+.+++.+++++.||.|++||....                                             
T Consensus       141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------------------------------------------  175 (313)
T 3odt_A          141 HNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV---------------------------------------------  175 (313)
T ss_dssp             CSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE---------------------------------------------
T ss_pred             CCCceeEEEEccCCCCEEEEEECCCCEEEEecCce---------------------------------------------
Confidence            99999999999877889999999999999993321                                             


Q ss_pred             eEeeecc-CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCc
Q 010784          337 KVMTPAI-CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLR  414 (501)
Q Consensus       337 ~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~  414 (501)
                       ...+.. |...+.+++|+|++. +++++.++ |++||+++++..      ..+.+|...|++++|+|+..+++++.||.
T Consensus       176 -~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~l~~~~~dg~  247 (313)
T 3odt_A          176 -IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL------RTYEGHESFVYCIKLLPNGDIVSCGEDRT  247 (313)
T ss_dssp             -EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE------EEEECCSSCEEEEEECTTSCEEEEETTSE
T ss_pred             -EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh------hhhhcCCceEEEEEEecCCCEEEEecCCE
Confidence             223333 788999999999998 78888887 999999986654      88889999999999999933556679999


Q ss_pred             EEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          415 INIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       415 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      |++||+.+++.+..+     ..|...|.+++|+|+++ +++++  .||.|++|++..+..
T Consensus       248 v~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~~~~~--~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          248 VRIWSKENGSLKQVI-----TLPAISIWSVDCMSNGD-IIVGS--SDNLVRIFSQEKSRW  299 (313)
T ss_dssp             EEEECTTTCCEEEEE-----ECSSSCEEEEEECTTSC-EEEEE--TTSCEEEEESCGGGC
T ss_pred             EEEEECCCCceeEEE-----eccCceEEEEEEccCCC-EEEEe--CCCcEEEEeCCCCce
Confidence            999999999999988     45677899999999998 55677  669999999987654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-37  Score=290.94  Aligned_cols=274  Identities=15%  Similarity=0.226  Sum_probs=218.8

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C--------CceeeeccCCCCceEEEEe
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K--------GSCQRCFKGHNGPVSTLSD  214 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~--------~~~~~~~~~h~~~v~~l~~  214 (501)
                      .....+.+|.+.|++++|.+..       ...+++++|++|+.|++|++|| .        +.....+.+|...|.+++|
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~-------~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~   84 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQ-------KENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL   84 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCS-------STTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEE
T ss_pred             eeeeeeccchhhhhheeeEEEe-------ecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEE
Confidence            5567889999999999993200       0001789999999999999998 2        2345678899999999999


Q ss_pred             eecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccc
Q 010784          215 KLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV  294 (501)
Q Consensus       215 s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~  294 (501)
                      +    +++.++++|+.|++|++||+.++.      .+..+.+|...|.+++|+| ++.+|++++.|+.|++||+......
T Consensus        85 ~----~~~~~l~s~s~D~~v~lwd~~~~~------~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~  153 (343)
T 2xzm_R           85 S----QENCFAISSSWDKTLRLWDLRTGT------TYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKF  153 (343)
T ss_dssp             C----SSTTEEEEEETTSEEEEEETTSSC------EEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEE
T ss_pred             C----CCCCEEEEEcCCCcEEEEECCCCc------EEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCcee
Confidence            7    889999999999999999999876      4778899999999999998 7889999999999999998743110


Q ss_pred             cceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC----------cEEEEEc
Q 010784          295 RSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK----------SLICTGG  364 (501)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~----------~~l~~~~  364 (501)
                      .                                          ......|...|.+++|+|++          .++++++
T Consensus       154 ~------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~  191 (343)
T 2xzm_R          154 S------------------------------------------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG  191 (343)
T ss_dssp             E------------------------------------------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred             e------------------------------------------eecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence            0                                          01123578889999999986          7899999


Q ss_pred             CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC-cccccccccCCCCCCCcce
Q 010784          365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT-GMLANSLLCNYPEEADIST  441 (501)
Q Consensus       365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v  441 (501)
                      .|+ |++||.. .+      ....+.+|...|++++|+|+ ++|++|+.||.|++||+.+ ......+      .+...|
T Consensus       192 ~d~~i~iwd~~-~~------~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~------~~~~~v  258 (343)
T 2xzm_R          192 WDGRLKVWNTN-FQ------IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF------DAGSTI  258 (343)
T ss_dssp             TTSEEEEEETT-TE------EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE------ECSSCE
T ss_pred             CCCEEEEEcCC-Cc------eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee------cCCCcE
Confidence            888 9999943 22      24678899999999999999 9999999999999999954 3344443      134569


Q ss_pred             eeeEeeccccEEEEeecCCCceEEEeeccCC----------------------------------ccceeecCCCCceee
Q 010784          442 GCSAMAVSGCRIVTASYGEPGLLQFRDFSNA----------------------------------TCPVLKHEVQNDSKF  487 (501)
Q Consensus       442 ~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~----------------------------------~~~~~s~~~d~~~~~  487 (501)
                      .+++|+|+++++++++   ++.|++|++...                                  +..+++|+.|+.+++
T Consensus       259 ~~v~~sp~~~~la~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~  335 (343)
T 2xzm_R          259 NQIAFNPKLQWVAVGT---DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRT  335 (343)
T ss_dssp             EEEEECSSSCEEEEEE---SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEE
T ss_pred             EEEEECCCCCEEEEEC---CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEE
Confidence            9999999999887653   478999986432                                  234678899999999


Q ss_pred             ecccCC
Q 010784          488 WGPQCY  493 (501)
Q Consensus       488 w~~~~~  493 (501)
                      |++..+
T Consensus       336 w~~~~g  341 (343)
T 2xzm_R          336 FSFETS  341 (343)
T ss_dssp             EEEEEE
T ss_pred             EEEEcc
Confidence            998654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-37  Score=298.96  Aligned_cols=302  Identities=12%  Similarity=0.134  Sum_probs=235.8

Q ss_pred             eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEeeCCCceEEecC------Cc------e
Q 010784          132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTSSCDHSIRLWWK------GS------C  198 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~vwd~------~~------~  198 (501)
                      ..+.+|+++.. ........|.+.|++++|+|             +++ +|++|+.||.|++||.      ++      .
T Consensus        25 ~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~-------------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~   90 (425)
T 1r5m_A           25 SIDSSDDLDGF-VKILKEIVKLDNIVSSTWNP-------------LDESILAYGEKNSVARLARIVETDQEGKKYWKLTI   90 (425)
T ss_dssp             ---------CC-CEECEEEEECSCCSEEEECS-------------SCTTEEEEEETBTEEEEEEEEEC------CEEEEE
T ss_pred             cccccccchhh-hhheeeeeccCceEEEEECC-------------CCCcEEEEecCCceEEEEEEecccCCccccccccc
Confidence            44567777643 22233345669999999999             788 9999999999999984      22      2


Q ss_pred             eeeccC----------CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784          199 QRCFKG----------HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG  268 (501)
Q Consensus       199 ~~~~~~----------h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  268 (501)
                      ...+..          |...|++++|+    +++++|++|+.||.|++||. ++.      ....+..|...|.+++|+|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~i~~~-~~~------~~~~~~~~~~~v~~~~~~~  159 (425)
T 1r5m_A           91 IAELRHPFALSASSGKTTNQVTCLAWS----HDGNSIVTGVENGELRLWNK-TGA------LLNVLNFHRAPIVSVKWNK  159 (425)
T ss_dssp             EEEEECCCCCC------CBCEEEEEEC----TTSSEEEEEETTSCEEEEET-TSC------EEEEECCCCSCEEEEEECT
T ss_pred             cccccccccccccccCCCCceEEEEEc----CCCCEEEEEeCCCeEEEEeC-CCC------eeeeccCCCccEEEEEECC
Confidence            233332          68899999997    89999999999999999993 333      4778889999999999998


Q ss_pred             cCCeEEEEEeCCCeEEEEECCCCccccceecccce----------ecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCc
Q 010784          269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT----------SVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQ  336 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~  336 (501)
                       ++.+|++++.|+.|++||+.+++.+.........          .....+.++.+.++..+++.+  +.+.+||+++++
T Consensus       160 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~  238 (425)
T 1r5m_A          160 -DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT  238 (425)
T ss_dssp             -TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS
T ss_pred             -CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc
Confidence             7889999999999999999988665433221110          001115556666665555544  489999999999


Q ss_pred             eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcE
Q 010784          337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRI  415 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i  415 (501)
                      .+..+..|...|.+++|+|++++|++++.++ |++||+++++..      ..+.+|...|.+++|+|+.++++++.||.|
T Consensus       239 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i  312 (425)
T 1r5m_A          239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ------NCFYGHSQSIVSASWVGDDKVISCSMDGSV  312 (425)
T ss_dssp             CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS------EEECCCSSCEEEEEEETTTEEEEEETTSEE
T ss_pred             eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc------eEecCCCccEEEEEECCCCEEEEEeCCCcE
Confidence            9999999999999999999999999999888 999999987654      788889999999999999566666799999


Q ss_pred             EEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          416 NIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       416 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      ++||+.+++.+..+     ..|...+.+++|+|++++|++++  .+|.|++|++..+
T Consensus       313 ~i~d~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~~~~~~  362 (425)
T 1r5m_A          313 RLWSLKQNTLLALS-----IVDGVPIFAGRISQDGQKYAVAF--MDGQVNVYDLKKL  362 (425)
T ss_dssp             EEEETTTTEEEEEE-----ECTTCCEEEEEECTTSSEEEEEE--TTSCEEEEECHHH
T ss_pred             EEEECCCCcEeEec-----ccCCccEEEEEEcCCCCEEEEEE--CCCeEEEEECCCC
Confidence            99999999998888     45677899999999999999999  6699999997643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.5e-38  Score=295.51  Aligned_cols=320  Identities=11%  Similarity=0.133  Sum_probs=242.8

Q ss_pred             EecCCCCceEEeeCC----cEEEeecCCeeeEEEEecccccccceeccc-----CCcceeEEEeeccCcCcccccCCCCc
Q 010784          107 YSVAKPHDHILLDNN----DIFSTQGSSIQNIKIDNFLSESYYRATLSD-----HKARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~----~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-----h~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      ..|..+|++++|+|+    ...+++++.++.|++|+..++ +.+..+..     |...|++++|+|++.         ++
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~   84 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSN---------TS   84 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTT---------TC
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCC---------CC
Confidence            357788999999983    444555555569999999975 55555543     567899999999320         12


Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      +.+|++|+.||.|++||  +++.+..+.+|...|.+++|+    + ++++|++|+.||.|++||+.+++.      ...+
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~  154 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH----PRDPNLLLSVSKDHALRLWNIQTDTL------VAIF  154 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEEC----SSCTTEEEEEETTSCEEEEETTTTEE------EEEE
T ss_pred             CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEEC----CCCCCEEEEEeCCCeEEEEEeecCeE------EEEe
Confidence            67999999999999999  778888899999999999997    6 889999999999999999998763      5555


Q ss_pred             ---cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784          255 ---YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID  331 (501)
Q Consensus       255 ---~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  331 (501)
                         .+|...|.+++|+| ++.+|++++.||.|++||+++++..............+......           . ..   
T Consensus       155 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~---  218 (366)
T 3k26_A          155 GGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI-----------S-QK---  218 (366)
T ss_dssp             CSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCC-----------C-EE---
T ss_pred             cccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccc-----------c-ee---
Confidence               68999999999998 78899999999999999999876543322110000000000000           0 00   


Q ss_pred             cCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC--------CCCCcccccCcccCeEEEEecC
Q 010784          332 LRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV--------KPQPMAELDGHVGSVTQLHMDP  402 (501)
Q Consensus       332 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~--------~~~~~~~~~~h~~~v~~l~~~~  402 (501)
                       ...........|...|.+++|+  ++++++++.|+ |++||+++.+...        ....+..+..|...|++++|+|
T Consensus       219 -~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  295 (366)
T 3k26_A          219 -IHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM  295 (366)
T ss_dssp             -ECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE
T ss_pred             -eccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC
Confidence             0011223445689999999998  77999999888 9999998865410        0123566778888999999988


Q ss_pred             C---eEEEEecCCCcEEEEeCCCccccc----ccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          403 Y---KIVTGGRDDLRINIWETDTGMLAN----SLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       403 ~---~~l~~gs~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +   +++++|+.||.|++||+.+++...    .+..   ..|...|.+++|+|++++|++++  .||.|++||+.
T Consensus       296 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~  365 (366)
T 3k26_A          296 DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH---HKCGAAIRQTSFSRDSSILIAVC--DDASIWRWDRL  365 (366)
T ss_dssp             CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECC---TTCCSCEEEEEECTTSSEEEEEE--TTSEEEEEEC-
T ss_pred             CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcc---cccCCceEEEEeCCCCCeEEEEe--CCCEEEEEEec
Confidence            6   888989999999999999987655    4421   12368999999999999999999  66999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-38  Score=303.38  Aligned_cols=305  Identities=11%  Similarity=0.130  Sum_probs=226.8

Q ss_pred             ccccCCeeeEE-EecCCCCceEEeeC-CcEEEeecCCeeeEEEEeccc---ccccceecc-cCCcceeEEEeeccCcCcc
Q 010784           96 FKFVDPLDVCF-YSVAKPHDHILLDN-NDIFSTQGSSIQNIKIDNFLS---ESYYRATLS-DHKARITCMRLFPLHETSL  169 (501)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~---~~~~~~~~~-~h~~~V~~~~~~~~~~~~~  169 (501)
                      |.........+ ..|..+|++++|+| ++.++++|+.|+.|++||+.+   +......+. +|.+.|++++|+|      
T Consensus        48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------  121 (437)
T 3gre_A           48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP------  121 (437)
T ss_dssp             GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT------
T ss_pred             ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC------
Confidence            44444444555 56778899999999 999999999999999999876   321211222 6999999999999      


Q ss_pred             cccCCCCcCcEEEEeeCCCceEEec-----CCceeeeccC------------CCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784          170 FRSEPQRTENVLVTSSCDHSIRLWW-----KGSCQRCFKG------------HNGPVSTLSDKLLGDGSGKILASGGEDA  232 (501)
Q Consensus       170 ~~~~~~~~~~~l~s~~~dg~i~vwd-----~~~~~~~~~~------------h~~~v~~l~~s~~~~~~~~~l~sg~~dg  232 (501)
                             ++++|++|+.||+|++||     .++.+..+..            +...+.++.+.+  .+++.+|++|+.||
T Consensus       122 -------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d~  192 (437)
T 3gre_A          122 -------NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV--NEEKSLLVALTNLS  192 (437)
T ss_dssp             -------TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE--CSSCEEEEEEETTS
T ss_pred             -------CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEE--cCCCCEEEEEeCCC
Confidence                   889999999999999997     2333332221            455666666421  36789999999999


Q ss_pred             cEEEEeccCCCccccccceeeccC--CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784          233 TVRLWSLSSSGKRGQQALKATLYG--HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV  310 (501)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  310 (501)
                      .|++||+.++.      .+..+.+  |...|++++|+| ++.+|++|+.||.|++||+++++.                 
T Consensus       193 ~i~iwd~~~~~------~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~-----------------  248 (437)
T 3gre_A          193 RVIIFDIRTLE------RLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVL-----------------  248 (437)
T ss_dssp             EEEEEETTTCC------EEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEE-----------------
T ss_pred             eEEEEeCCCCe------eeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccE-----------------
Confidence            99999999876      4677777  889999999998 788999999999999999987643                 


Q ss_pred             eeecCCCeEEEEeCCcEEEEEcCCCceEeeec-cCCCcEEEEEEc----CCCcEEEEEcCCc-EEEEecCCCCCCCCCC-
Q 010784          311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-ICKPILHSFSIM----PSKSLICTGGIGK-AMTWDIRRSQDAVKPQ-  383 (501)
Q Consensus       311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~v~~~----~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~-  383 (501)
                                                 +..+. .|...|.+++++    |++.+|++|+.|+ |++||+++++...... 
T Consensus       249 ---------------------------~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  301 (437)
T 3gre_A          249 ---------------------------IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN  301 (437)
T ss_dssp             ---------------------------EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred             ---------------------------EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence                                       22332 466789999555    5688999999999 9999999876330000 


Q ss_pred             -----Cc------------ccccC--cccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCC----------
Q 010784          384 -----PM------------AELDG--HVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYP----------  434 (501)
Q Consensus       384 -----~~------------~~~~~--h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~----------  434 (501)
                           ..            ..+.+  |...|++++|++.+++++|+.||.|++||+.+++.+..+..+..          
T Consensus       302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  381 (437)
T 3gre_A          302 SDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQV  381 (437)
T ss_dssp             SSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEE
T ss_pred             CCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEe
Confidence                 00            01233  78889999999558888999999999999999998888854321          


Q ss_pred             ----------------------CCCCcceeeeEeecc--ccEEEEeecCCCceEEEee
Q 010784          435 ----------------------EEADISTGCSAMAVS--GCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       435 ----------------------~~~~~~v~~~~~s~~--g~~l~s~~~d~~g~i~~w~  468 (501)
                                            ..|...|++++|+++  +.+|++|+  .||.|++|+
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~--~dG~I~iw~  437 (437)
T 3gre_A          382 TANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD--NSGLIGIFQ  437 (437)
T ss_dssp             ETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE--TTSCEEEEC
T ss_pred             ecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc--CCceEEEeC
Confidence                                  115566666666666  55666666  446666663

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-37  Score=299.15  Aligned_cols=286  Identities=15%  Similarity=0.238  Sum_probs=230.9

Q ss_pred             cceeEEEeeccCcCcccccCCCCcCc-EEEEe----------eCCCceEEec--CCc---eeeeccCCCCceEEEEeeec
Q 010784          154 ARITCMRLFPLHETSLFRSEPQRTEN-VLVTS----------SCDHSIRLWW--KGS---CQRCFKGHNGPVSTLSDKLL  217 (501)
Q Consensus       154 ~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~----------~~dg~i~vwd--~~~---~~~~~~~h~~~v~~l~~s~~  217 (501)
                      ..|.+++|+|             ++. +|++|          +.||.|++||  .+.   .+..+ .|...|.+++|+  
T Consensus        13 ~~v~~~~~sp-------------~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s--   76 (416)
T 2pm9_A           13 SRTATFAWSH-------------DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWS--   76 (416)
T ss_dssp             EESCBCCBCS-------------SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEEC--
T ss_pred             hhcceEeeCC-------------CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEEC--
Confidence            4688889988             665 99999          8899999999  333   33333 589999999997  


Q ss_pred             CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc--
Q 010784          218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR--  295 (501)
Q Consensus       218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--  295 (501)
                        +++.+|++|+.||.|++||+.+...  .......+.+|...|.+++|+|.++.+|++++.||.|++||+++++...  
T Consensus        77 --~~~~~l~~~~~dg~v~vw~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  152 (416)
T 2pm9_A           77 --HNNKIIAGALDNGSLELYSTNEANN--AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN  152 (416)
T ss_dssp             --SSSSCEEEEESSSCEEEECCSSTTS--CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred             --CCCCeEEEEccCCeEEEeecccccc--cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence              8999999999999999999987211  0115778889999999999998558899999999999999999876210  


Q ss_pred             --ceecccceecCCCceeeecCCC--eEEEEe--CCcEEEEEcCCCceEeeeccC------CCcEEEEEEcCCC-cEEEE
Q 010784          296 --SSCCVGMTSVPGVPVDMKCHES--MLYIAS--GSSVVTIDLRTMQKVMTPAIC------KPILHSFSIMPSK-SLICT  362 (501)
Q Consensus       296 --~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~i~~~d~~~~~~~~~~~~~------~~~v~~v~~~~~~-~~l~~  362 (501)
                        .........+...+.++.++++  ..+++.  ++.|++||+++++.+..+..+      ...|.+++|+|++ .++++
T Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence              0011111245567778888775  233332  348999999999998888876      7889999999996 68888


Q ss_pred             EcCC----cEEEEecCCCCCCCCCCCccccc-CcccCeEEEEecC-C-eEEEEecCCCcEEEEeCCCcccccccccCCCC
Q 010784          363 GGIG----KAMTWDIRRSQDAVKPQPMAELD-GHVGSVTQLHMDP-Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPE  435 (501)
Q Consensus       363 ~~~d----~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~-~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~  435 (501)
                      ++.+    .|++||+++...     ++..+. +|...|++++|+| + .++++++.||.|++||+.+++.+..+     .
T Consensus       233 ~~~d~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-----~  302 (416)
T 2pm9_A          233 ATGSDNDPSILIWDLRNANT-----PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-----P  302 (416)
T ss_dssp             EECCSSSCCCCEEETTSTTS-----CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE-----E
T ss_pred             EECCCCCceEEEEeCCCCCC-----CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee-----c
Confidence            8865    699999998632     246777 8999999999999 6 88888899999999999999999998     5


Q ss_pred             CCCcceeeeEeeccc-cEEEEeecCCCceEEEeeccC
Q 010784          436 EADISTGCSAMAVSG-CRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       436 ~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      .|...|.+++|+|++ .+|++++  .|+.|++|++..
T Consensus       303 ~~~~~v~~~~~s~~~~~~l~s~~--~d~~i~iw~~~~  337 (416)
T 2pm9_A          303 ARGNWCFKTKFAPEAPDLFACAS--FDNKIEVQTLQN  337 (416)
T ss_dssp             CSSSCCCCEEECTTCTTEEEECC--SSSEEEEEESCC
T ss_pred             CCCCceEEEEECCCCCCEEEEEe--cCCcEEEEEccC
Confidence            677889999999999 8999999  669999999754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.1e-37  Score=292.52  Aligned_cols=266  Identities=19%  Similarity=0.279  Sum_probs=214.6

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCC------------------CceE
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHN------------------GPVS  210 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~------------------~~v~  210 (501)
                      +|.+.|++++|+|             +|++|++|+ ++++++|+  .+..+..+..|.                  ..|.
T Consensus        62 ~h~~~V~~v~fsp-------------dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~  127 (393)
T 1erj_A           62 DHTSVVCCVKFSN-------------DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR  127 (393)
T ss_dssp             ECSSCCCEEEECT-------------TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEE
T ss_pred             CCCCEEEEEEECC-------------CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEE
Confidence            6999999999999             899999987 78999998  666666665543                  2489


Q ss_pred             EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC
Q 010784          211 TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST  290 (501)
Q Consensus       211 ~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~  290 (501)
                      +++|+    +++++|++|+.||.|++||+.+++      ....+.+|...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus       128 ~v~~s----~dg~~l~s~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~  196 (393)
T 1erj_A          128 SVCFS----PDGKFLATGAEDRLIRIWDIENRK------IVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRT  196 (393)
T ss_dssp             EEEEC----TTSSEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEC----CCCCEEEEEcCCCeEEEEECCCCc------EEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCC
Confidence            99997    899999999999999999999876      4778899999999999998 778999999999999999988


Q ss_pred             CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-E
Q 010784          291 SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-A  368 (501)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i  368 (501)
                      ++..                                            ..+. +...+.+++++| ++++|++|+.|+ |
T Consensus       197 ~~~~--------------------------------------------~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v  231 (393)
T 1erj_A          197 GQCS--------------------------------------------LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAV  231 (393)
T ss_dssp             TEEE--------------------------------------------EEEE-CSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred             CeeE--------------------------------------------EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence            7431                                            1111 456789999999 899999999999 9


Q ss_pred             EEEecCCCCCCCCC-CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc------------cccccccCCC
Q 010784          369 MTWDIRRSQDAVKP-QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM------------LANSLLCNYP  434 (501)
Q Consensus       369 ~iwd~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~------------~~~~~~~~~~  434 (501)
                      ++||+++++..... .......+|...|++++|+|+ +++++|+.||.|++||+.+..            +..++     
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-----  306 (393)
T 1erj_A          232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-----  306 (393)
T ss_dssp             EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE-----
T ss_pred             EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE-----
Confidence            99999987543000 001122578999999999999 899999999999999997643            23344     


Q ss_pred             CCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC---------------------------ccceeecCCCCceee
Q 010784          435 EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA---------------------------TCPVLKHEVQNDSKF  487 (501)
Q Consensus       435 ~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~---------------------------~~~~~s~~~d~~~~~  487 (501)
                      .+|...|.+++|+|++++|++|+  .|+.|++||+..+                           ...+++++.|+++++
T Consensus       307 ~~h~~~v~~~~~~~~~~~l~sgs--~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~i  384 (393)
T 1erj_A          307 IGHKDFVLSVATTQNDEYILSGS--KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI  384 (393)
T ss_dssp             ECCSSCEEEEEECGGGCEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred             ecccCcEEEEEECCCCCEEEEEe--CCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEE
Confidence            46788899999999999999999  6699999996532                           345779999999999


Q ss_pred             ecccCC
Q 010784          488 WGPQCY  493 (501)
Q Consensus       488 w~~~~~  493 (501)
                      |++...
T Consensus       385 W~~~~~  390 (393)
T 1erj_A          385 WKYKKI  390 (393)
T ss_dssp             EEEEEC
T ss_pred             Cccccc
Confidence            998643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=280.21  Aligned_cols=278  Identities=15%  Similarity=0.178  Sum_probs=230.8

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceec--ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL--SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      .++|+||+++ +||+| .|++|+|||+.++ +.++.+  .+|...|++++|+|             ++++|++|+.||+|
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~-------------~~~~l~sgs~Dg~v   91 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIK-------------EGNYLAVGTSSAEV   91 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECT-------------TSSEEEEEETTSEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCC-CEEEEEEecCCCCeEEEEEECC-------------CCCEEEEEECCCcE
Confidence            5889999987 66766 4899999999986 666555  57888899999999             89999999999999


Q ss_pred             EEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784          191 RLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG  268 (501)
Q Consensus       191 ~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  268 (501)
                      ++||  +++++..+.+|...+.++.+      ++..+++|+.++.+++|+......     .+..+.+|...+..+.+.+
T Consensus        92 ~iw~~~~~~~~~~~~~h~~~~~~~~~------~~~~l~s~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  160 (318)
T 4ggc_A           92 QLWDVQQQKRLRNMTSHSARVGSLSW------NSYILSSGSRSGHIHHHDVRVAEH-----HVATLSGHSQEVCGLRWAP  160 (318)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEE------ETTEEEEEETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECT
T ss_pred             EEeecCCceeEEEecCccceEEEeec------CCCEEEEEecCCceEeeecCCCce-----eEEEEcCccCceEEEEEcC
Confidence            9999  78889999999999988875      467999999999999999988765     6778889999999999997


Q ss_pred             cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784          269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL  348 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v  348 (501)
                       ++.++++++.||.|++||+++++....                                        .......+.+.|
T Consensus       161 -~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------------------------------~~~~~~~~~~~v  199 (318)
T 4ggc_A          161 -DGRHLASGGNDNLVNVWPSAPGEGGWV----------------------------------------PLQTFTQHQGAV  199 (318)
T ss_dssp             -TSSEEEEEETTSCEEEEESSCBTTBSC----------------------------------------CSEEECCCCSCE
T ss_pred             -CCCEEEEEecCcceeEEECCCCccccc----------------------------------------ceeeecccCCce
Confidence             788999999999999999988753211                                        112334567889


Q ss_pred             EEEEEcCCCc-EE--EEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEE-EEecCCCcEEEEeCC
Q 010784          349 HSFSIMPSKS-LI--CTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIV-TGGRDDLRINIWETD  421 (501)
Q Consensus       349 ~~v~~~~~~~-~l--~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l-~~gs~dg~i~iwd~~  421 (501)
                      .++.++|++. ++  ++++.++ |++||.+....       .....+...+..+.++|.  .++ ++|+.|+.|++||+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~  272 (318)
T 4ggc_A          200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-------LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP  272 (318)
T ss_dssp             EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-------EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             EEEEecCCCCcEEEEEecCCCCEEEEEecccccc-------cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence            9999998754 33  3556777 99999988654       233446778999999998  333 345589999999999


Q ss_pred             CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      +++++.++     .+|...|++++|+|+|++|++|+  .||.|++||+...
T Consensus       273 ~~~~~~~l-----~gH~~~V~~l~~spdg~~l~S~s--~D~~v~iWd~~~~  316 (318)
T 4ggc_A          273 TMAKVAEL-----KGHTSRVLSLTMSPDGATVASAA--ADETLRLWRCFEL  316 (318)
T ss_dssp             TCCEEEEE-----CCCSSCEEEEEECTTSSCEEEEE--TTTEEEEECCSCC
T ss_pred             CCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEe--cCCeEEEEECCCC
Confidence            99999999     67889999999999999999999  6699999998654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.3e-37  Score=293.69  Aligned_cols=278  Identities=16%  Similarity=0.210  Sum_probs=233.6

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceec--ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL--SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      .+.|+|++++ +||+|. |++|+|||..++ +....+  .+|.+.|++|+|+|             +|++|++|+.||+|
T Consensus       108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg-~~~~~~~~~~~~~~V~sv~fsp-------------dg~~lasgs~Dg~v  171 (420)
T 4gga_A          108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIK-------------EGNYLAVGTSSAEV  171 (420)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECT-------------TSSEEEEEETTSCE
T ss_pred             ceeEEECCCC-EEEEEe-CCEEEEEECCCC-CEEEEEEecCCCCcEEEEEECC-------------CCCEEEEEECCCeE
Confidence            7899999865 677765 899999999986 555544  57888999999999             89999999999999


Q ss_pred             EEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784          191 RLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG  268 (501)
Q Consensus       191 ~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  268 (501)
                      +|||  +++.+..+.+|...+.++.+      ++.+|++|+.|+.+++||......     .+..+.+|...+..+.+.+
T Consensus       172 ~iWd~~~~~~~~~~~~h~~~v~~~s~------~~~~l~sgs~d~~i~~~d~~~~~~-----~~~~~~~h~~~~~~~~~~~  240 (420)
T 4gga_A          172 QLWDVQQQKRLRNMTSHSARVGSLSW------NSYILSSGSRSGHIHHHDVRVAEH-----HVATLSGHSQEVCGLRWAP  240 (420)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEE------ETTEEEEEETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECT
T ss_pred             EEEEcCCCcEEEEEeCCCCceEEEee------CCCEEEEEeCCCceeEeeecccce-----eeEEecccccceeeeeecC
Confidence            9999  78889999999999999987      467999999999999999988665     6778899999999999997


Q ss_pred             cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784          269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL  348 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v  348 (501)
                       ++.++++++.|+.+++|+..+++...                                        ..+.....|...|
T Consensus       241 -~g~~l~s~~~D~~v~i~~~~~~~~~~----------------------------------------~~~~~~~~~~~~V  279 (420)
T 4gga_A          241 -DGRHLASGGNDNLVNVWPSAPGEGGW----------------------------------------VPLQTFTQHQGAV  279 (420)
T ss_dssp             -TSSEEEEEETTSCEEEEESSCCSSCS----------------------------------------CCSEEECCCSSCE
T ss_pred             -CCCeeeeeeccccceEEeeccccccc----------------------------------------eeeeeecccCCce
Confidence             78899999999999999998764311                                        1223455688999


Q ss_pred             EEEEEcCC-CcEEEEE--cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEE-ecCCCcEEEEeCC
Q 010784          349 HSFSIMPS-KSLICTG--GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTG-GRDDLRINIWETD  421 (501)
Q Consensus       349 ~~v~~~~~-~~~l~~~--~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~-gs~dg~i~iwd~~  421 (501)
                      .+++|+|+ +.+++++  +.|+ |++||+.+++..      ..+.. ...+.++.|+|+  .++++ |+.|+.|+|||+.
T Consensus       280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~------~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~  352 (420)
T 4gga_A          280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL------SAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYP  352 (420)
T ss_dssp             EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE------EEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc------eeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence            99999997 4555553  4677 999999997654      55554 457889999998  44433 4579999999999


Q ss_pred             CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      +++++.++     .+|...|++++|+|||++|++|+  .|++|++||+...
T Consensus       353 ~~~~v~~l-----~gH~~~V~~l~~spdg~~l~S~s--~D~tvriWdv~~~  396 (420)
T 4gga_A          353 TMAKVAEL-----KGHTSRVLSLTMSPDGATVASAA--ADETLRLWRCFEL  396 (420)
T ss_dssp             TCCEEEEE-----CCCSSCEEEEEECTTSSCEEEEE--TTTEEEEECCSCS
T ss_pred             CCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEe--cCCeEEEEECCCC
Confidence            99999999     67889999999999999999999  6699999998654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=290.68  Aligned_cols=332  Identities=13%  Similarity=0.142  Sum_probs=236.5

Q ss_pred             eEEEecCCCCceEEeeC-CcEEEeecCCeeeEEEEecccccccceec-------------ccCCcceeEEEeeccCcCcc
Q 010784          104 VCFYSVAKPHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATL-------------SDHKARITCMRLFPLHETSL  169 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-------------~~h~~~V~~~~~~~~~~~~~  169 (501)
                      ..+..|..+|++++|+| ++.++++|+.|+.|++||+.++ .....+             .+|...|++++|+|+     
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----  110 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-----  110 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCC-SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-----
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCC-cccceEeccccccccccccccCCCcEEEEEEccC-----
Confidence            34455888999999999 9999999999999999999875 333333             369999999999984     


Q ss_pred             cccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc
Q 010784          170 FRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ  247 (501)
Q Consensus       170 ~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  247 (501)
                             ++++|++++.||.|++||  .+..+..+. +...+.++.|++. .+++.++++|+.||.|++||+.++.    
T Consensus       111 -------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~d~~~~~----  177 (408)
T 4a11_B          111 -------DTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPV-STKHCLVAVGTRGPKVQLCDLKSGS----  177 (408)
T ss_dssp             -------CTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSS-CSSCCEEEEEESSSSEEEEESSSSC----
T ss_pred             -------CCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecC-CCCCcEEEEEcCCCeEEEEeCCCcc----
Confidence                   567999999999999999  556666665 7888999999732 2356699999999999999999876    


Q ss_pred             ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcE
Q 010784          248 QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV  327 (501)
Q Consensus       248 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  327 (501)
                        ....+..|...|.+++|+|.+..++++++.||.|++||++++..........    ...                   
T Consensus       178 --~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~-------------------  232 (408)
T 4a11_B          178 --CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH----NGK-------------------  232 (408)
T ss_dssp             --CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT----TTC-------------------
T ss_pred             --eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc----ccc-------------------
Confidence              4778889999999999998555579999999999999998765211100000    000                   


Q ss_pred             EEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eE
Q 010784          328 VTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KI  405 (501)
Q Consensus       328 ~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~  405 (501)
                           ...........|...|.+++|+|++++|++++.|+ |++||+.+++........................+. .+
T Consensus       233 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          233 -----KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             -----SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred             -----cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence                 00011123356889999999999999999999888 999999987654110000000111112222333334 45


Q ss_pred             EEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc----------
Q 010784          406 VTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP----------  475 (501)
Q Consensus       406 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~----------  475 (501)
                      +++ +.|+.|++||+.+++.+..+     .+|...|.+++|+|++++|++++  .||.|++|++......          
T Consensus       308 ~~~-~~~~~i~v~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~  379 (408)
T 4a11_B          308 VFV-PYGSTIAVYTVYSGEQITML-----KGHYKTVDCCVFQSNFQELYSGS--RDCNILAWVPSLYEPVPDDDETTTKS  379 (408)
T ss_dssp             EEE-EETTEEEEEETTTCCEEEEE-----CCCSSCEEEEEEETTTTEEEEEE--TTSCEEEEEECC--------------
T ss_pred             EEE-ecCCEEEEEECcCCcceeee-----ccCCCeEEEEEEcCCCCEEEEEC--CCCeEEEEeCCCCCccCCCCceEecc
Confidence            544 58999999999999999999     56788999999999999999999  6699999998765432          


Q ss_pred             ---------eeecCCCCceeeecccC
Q 010784          476 ---------VLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       476 ---------~~s~~~d~~~~~w~~~~  492 (501)
                               ..+.+.++.+++|....
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          380 QLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             --------------------------
T ss_pred             ccccccceeecccCccCceeecCCcc
Confidence                     22556778888886543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-37  Score=292.74  Aligned_cols=303  Identities=11%  Similarity=0.097  Sum_probs=225.0

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCC-------eeeEEEEeccccccc---------ceecccCCcceeEEEeeccCcCc
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSS-------IQNIKIDNFLSESYY---------RATLSDHKARITCMRLFPLHETS  168 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~-------d~~i~vw~~~~~~~~---------~~~~~~h~~~V~~~~~~~~~~~~  168 (501)
                      ..+...-||.+++|+|++.+|++|+.       ++.|++|++..+...         ...+.+|.+.|.++++...    
T Consensus         9 ~~~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~----   84 (365)
T 4h5i_A            9 ASYNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG----   84 (365)
T ss_dssp             EEEECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT----
T ss_pred             eecCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC----
Confidence            34445668999999999999999864       456999998754211         1346789999999987641    


Q ss_pred             ccccCCCCcCcEEEEeeCCCceEEec--CC-ceee--------eccCCCCceEEEEeeecCCCCCCEEE--EeeCCCcEE
Q 010784          169 LFRSEPQRTENVLVTSSCDHSIRLWW--KG-SCQR--------CFKGHNGPVSTLSDKLLGDGSGKILA--SGGEDATVR  235 (501)
Q Consensus       169 ~~~~~~~~~~~~l~s~~~dg~i~vwd--~~-~~~~--------~~~~h~~~v~~l~~s~~~~~~~~~l~--sg~~dg~i~  235 (501)
                      .+.+..+.++..|++++.|+.+++|+  .. ..+.        ....+...+.+++|+    |+|++++  +++.|++|+
T Consensus        85 ~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS----pDg~~la~as~~~d~~i~  160 (365)
T 4h5i_A           85 IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS----REGTVAAIASSKVPAIMR  160 (365)
T ss_dssp             EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC----TTSSCEEEEESCSSCEEE
T ss_pred             EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc----CCCCEEEEEECCCCCEEE
Confidence            11111112233444556788899997  22 1111        122355668999997    8999876  455799999


Q ss_pred             EEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC
Q 010784          236 LWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH  315 (501)
Q Consensus       236 iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (501)
                      +||+.++..      +..+. |...|.+++|+| +++++++++.+ .+.+|+..+++...                    
T Consensus       161 iwd~~~~~~------~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~--------------------  211 (365)
T 4h5i_A          161 IIDPSDLTE------KFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIA--------------------  211 (365)
T ss_dssp             EEETTTTEE------EEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEE--------------------
T ss_pred             EeECCCCcE------EEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCccee--------------------
Confidence            999998763      55554 778899999998 78899998854 56777766654211                    


Q ss_pred             CCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-----EEEEecCCCCCCCCCCCcccccC
Q 010784          316 ESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-----AMTWDIRRSQDAVKPQPMAELDG  390 (501)
Q Consensus       316 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-----i~iwd~~~~~~~~~~~~~~~~~~  390 (501)
                                            ......|...|.+++|+|++.++++++.++     +++|++......  ......+.+
T Consensus       212 ----------------------~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~--~~~~~~~~~  267 (365)
T 4h5i_A          212 ----------------------RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS--VLRSKQVTN  267 (365)
T ss_dssp             ----------------------EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE--EEEEEEEES
T ss_pred             ----------------------eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec--ceeeeeecC
Confidence                                  122345778899999999999999988432     677887765432  122356778


Q ss_pred             cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          391 HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       391 h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      |...|++++|+|+ ++||+|+.|++|+|||+.+++++.++.    .+|...|++++|+|||++|++||  .|++|+||++
T Consensus       268 ~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~----~gH~~~V~~v~fSpdg~~laS~S--~D~tvrvw~i  341 (365)
T 4h5i_A          268 RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK----QAHSFAITEVTISPDSTYVASVS--AANTIHIIKL  341 (365)
T ss_dssp             SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET----TSSSSCEEEEEECTTSCEEEEEE--TTSEEEEEEC
T ss_pred             CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec----CcccCCEEEEEECCCCCEEEEEe--CCCeEEEEEc
Confidence            9999999999999 999999999999999999999998863    57889999999999999999999  6699999999


Q ss_pred             cCCcc
Q 010784          470 SNATC  474 (501)
Q Consensus       470 ~~~~~  474 (501)
                      .....
T Consensus       342 p~~~~  346 (365)
T 4h5i_A          342 PLNYA  346 (365)
T ss_dssp             CTTTT
T ss_pred             CCCCc
Confidence            65543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-36  Score=284.20  Aligned_cols=270  Identities=19%  Similarity=0.347  Sum_probs=225.6

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C-----CceeeeccCCCCceEEEEeee
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K-----GSCQRCFKGHNGPVSTLSDKL  216 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~-----~~~~~~~~~h~~~v~~l~~s~  216 (501)
                      .+..+|+||.+.|++|+|+|+            ++++|+||+.||+|+|||  .     +.+...+.+|...|.+++|+ 
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~------------~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s-   95 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQ------------FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS-   95 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTT------------CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC-
T ss_pred             EEEEEECCccCCEEEEEEeCC------------CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC-
Confidence            566789999999999999993            368999999999999998  2     23456788999999999997 


Q ss_pred             cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784          217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS  296 (501)
Q Consensus       217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~  296 (501)
                         +++++|++|+.|+.|++|+.....      .......+...+..+.+.+ .+.+|++++.|+.+++||+.....   
T Consensus        96 ---~dg~~l~s~~~d~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~---  162 (340)
T 4aow_A           96 ---SDGQFALSGSWDGTLRLWDLTTGT------TTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCK---  162 (340)
T ss_dssp             ---TTSSEEEEEETTSEEEEEETTTTE------EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE---
T ss_pred             ---CCCCEEEEEcccccceEEeecccc------eeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCce---
Confidence               899999999999999999998876      3566667788888888886 778999999999999999876532   


Q ss_pred             eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC--CcEEEEEcCCc-EEEEec
Q 010784          297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS--KSLICTGGIGK-AMTWDI  373 (501)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~d~-i~iwd~  373 (501)
                                                              ......+|...+..++|+++  ..++++++.|+ |++||+
T Consensus       163 ----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~  202 (340)
T 4aow_A          163 ----------------------------------------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL  202 (340)
T ss_dssp             ----------------------------------------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred             ----------------------------------------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEEC
Confidence                                                    12234567889999999886  46788888888 999999


Q ss_pred             CCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784          374 RRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR  452 (501)
Q Consensus       374 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  452 (501)
                      ++.+..      ..+.+|.+.|++++|+|+ +++++|+.||.|++||+.+++.+..+.      +...+..++|+|++.+
T Consensus       203 ~~~~~~------~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~  270 (340)
T 4aow_A          203 ANCKLK------TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD------GGDIINALCFSPNRYW  270 (340)
T ss_dssp             TTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE------CSSCEEEEEECSSSSE
T ss_pred             CCCcee------eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec------CCceEEeeecCCCCce
Confidence            987654      788899999999999999 999999999999999999999888884      2457999999999876


Q ss_pred             EEEeecCCCceEEEeecc------------------------------CCccceeecCCCCceeeecccCCC
Q 010784          453 IVTASYGEPGLLQFRDFS------------------------------NATCPVLKHEVQNDSKFWGPQCYS  494 (501)
Q Consensus       453 l~s~~~d~~g~i~~w~~~------------------------------~~~~~~~s~~~d~~~~~w~~~~~~  494 (501)
                      ++++   .|+.|++||+.                              +++..+++++.|+.+++|++..+.
T Consensus       271 ~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          271 LCAA---TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEE---ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             eecc---CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            6554   45999999854                              234567899999999999998653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.2e-36  Score=277.87  Aligned_cols=256  Identities=15%  Similarity=0.178  Sum_probs=208.7

Q ss_pred             EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      +..|...|.+++|+++|.+||+|+.|+.|+||++..+ .+.+.++.+|.+.|++++|++..           ++++|++|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-----------~g~~l~s~   73 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------FGTILASC   73 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-----------GCSEEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-----------cCCEEEEE
Confidence            3457788999999999999999999999999999742 36778999999999999998621           47899999


Q ss_pred             eCCCceEEec--CC--ceeeeccCCCCceEEEEeeecCCCC--CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784          185 SCDHSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGS--GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE  258 (501)
Q Consensus       185 ~~dg~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  258 (501)
                      +.||+|++||  .+  ..+..+.+|...|.+++|+    |+  +.+|++|+.||.|++||++++..    .....+.+|.
T Consensus        74 s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~----p~~~g~~l~s~s~d~~v~~wd~~~~~~----~~~~~~~~h~  145 (297)
T 2pm7_B           74 SYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWA----PHEYGPMLLVASSDGKVSVVEFKENGT----TSPIIIDAHA  145 (297)
T ss_dssp             ETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEEC----CGGGCSEEEEEETTSEEEEEEBCSSSC----BCCEEEECCS
T ss_pred             cCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeC----cCCCCcEEEEEECCCcEEEEEecCCCc----eeeeeeeccc
Confidence            9999999999  33  3556778899999999997    54  78999999999999999987642    1235677899


Q ss_pred             CceeEEEEeecC------------CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784          259 KPIKLMSVAGHK------------SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS  326 (501)
Q Consensus       259 ~~v~~l~~~~~~------------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (501)
                      ..|.+++|+|..            +.+|++|+.|+.|++||+++++..                                
T Consensus       146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~--------------------------------  193 (297)
T 2pm7_B          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--------------------------------  193 (297)
T ss_dssp             SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE--------------------------------
T ss_pred             CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce--------------------------------
Confidence            999999999842            468999999999999998765321                                


Q ss_pred             EEEEEcCCCceEeeeccCCCcEEEEEEcCCC---cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784          327 VVTIDLRTMQKVMTPAICKPILHSFSIMPSK---SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP  402 (501)
Q Consensus       327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~---~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  402 (501)
                              ......+.+|...|.+++|+|++   .+|++++.|+ |++||++...... .........|...|.+++|+|
T Consensus       194 --------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~  264 (297)
T 2pm7_B          194 --------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW-KKTLLKEEKFPDVLWRASWSL  264 (297)
T ss_dssp             --------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC-EEEESSSSCCSSCEEEEEECS
T ss_pred             --------EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc-ceeeeecccCCCcEEEEEECC
Confidence                    01234677899999999999984   8999999999 9999998743210 000111256788999999999


Q ss_pred             C-eEEEEecCCCcEEEEeCC
Q 010784          403 Y-KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       403 ~-~~l~~gs~dg~i~iwd~~  421 (501)
                      + ++|++++.||.|++|+..
T Consensus       265 ~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          265 SGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SSCCEEEEETTSCEEEEEEC
T ss_pred             CCCEEEEEcCCCcEEEEEEC
Confidence            9 889998999999999976

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=295.29  Aligned_cols=298  Identities=14%  Similarity=0.125  Sum_probs=226.3

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccc----------cceecccCC------------cceeEEEeeccCc
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY----------YRATLSDHK------------ARITCMRLFPLHE  166 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~----------~~~~~~~h~------------~~V~~~~~~~~~~  166 (501)
                      +...|++++|+|+|.+||+|+.||.|+||++.++..          ....+.+|.            +.|++++|+|   
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~---  103 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP---  103 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC---
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC---
Confidence            456799999999999999999999999999987532          577889998            8899999999   


Q ss_pred             CcccccCCCCcC--cEEEEeeCCCceEEec--CCcee---------------------------------------ee-c
Q 010784          167 TSLFRSEPQRTE--NVLVTSSCDHSIRLWW--KGSCQ---------------------------------------RC-F  202 (501)
Q Consensus       167 ~~~~~~~~~~~~--~~l~s~~~dg~i~vwd--~~~~~---------------------------------------~~-~  202 (501)
                                ++  .+|++++.||+|++||  .+...                                       .. .
T Consensus       104 ----------~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B          104 ----------QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             ----------CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             ----------CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence                      55  7999999999999999  22211                                       12 3


Q ss_pred             cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee-------eccCCCCceeEEEEeecCCeEEE
Q 010784          203 KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA-------TLYGHEKPIKLMSVAGHKSFLLV  275 (501)
Q Consensus       203 ~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~~~~~~~~l~  275 (501)
                      .+|...|.+++|+    +++++|++| .||.|++||+.+...     ...       .+.+|...|.+++|+|.+..+|+
T Consensus       174 ~~h~~~v~~~~~~----~~~~~l~s~-~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  243 (447)
T 3dw8_B          174 NAHTYHINSISIN----SDYETYLSA-DDLRINLWHLEITDR-----SFNIVDIKPANMEELTEVITAAEFHPNSCNTFV  243 (447)
T ss_dssp             SCCSSCCCEEEEC----TTSSEEEEE-CSSEEEEEETTEEEE-----EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred             cCCCcceEEEEEc----CCCCEEEEe-CCCeEEEEECCCCCc-----eeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence            6899999999997    789999998 799999999985432     222       46789999999999984448999


Q ss_pred             EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC-CceEeeeccCCCcEEEEEEc
Q 010784          276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT-MQKVMTPAICKPILHSFSIM  354 (501)
Q Consensus       276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~~v~~~  354 (501)
                      +|+.||.|++||+++++.....                             +..+.... ......+..|...|.+++|+
T Consensus       244 s~~~dg~i~iwd~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  294 (447)
T 3dw8_B          244 YSSSKGTIRLCDMRASALCDRH-----------------------------SKLFEEPEDPSNRSFFSEIISSISDVKFS  294 (447)
T ss_dssp             EEETTSCEEEEETTTCSSSCTT-----------------------------CEEECCC-----CCHHHHHTTCEEEEEEC
T ss_pred             EEeCCCeEEEEECcCCccccce-----------------------------eeEeccCCCccccccccccCceEEEEEEC
Confidence            9999999999999987531100                             00000000 00011223345699999999


Q ss_pred             CCCcEEEEEcCCc-EEEEecCC-CCCCCCCCCcccccCcccC---------------eEEEEecCC-eEEEEecCCCcEE
Q 010784          355 PSKSLICTGGIGK-AMTWDIRR-SQDAVKPQPMAELDGHVGS---------------VTQLHMDPY-KIVTGGRDDLRIN  416 (501)
Q Consensus       355 ~~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~h~~~---------------v~~l~~~~~-~~l~~gs~dg~i~  416 (501)
                      |++++|++++. + |++||+++ ++.      +..+.+|...               +..++|+|+ ++|++|+.||.|+
T Consensus       295 ~~g~~l~~~~~-~~v~iwd~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~  367 (447)
T 3dw8_B          295 HSGRYMMTRDY-LSVKVWDLNMENRP------VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFR  367 (447)
T ss_dssp             TTSSEEEEEES-SEEEEEETTCCSSC------SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEE
T ss_pred             CCCCEEEEeeC-CeEEEEeCCCCccc------cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEE
Confidence            99999999999 7 99999997 443      4677777542               334999999 8889999999999


Q ss_pred             EEeCCCcccccccccCC----------------------------CCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          417 IWETDTGMLANSLLCNY----------------------------PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       417 iwd~~~~~~~~~~~~~~----------------------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      +||+.+++.+. +..+.                            .......|..++|+|++++|++++.+   .+++|.
T Consensus       368 iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~---~~~~~~  443 (447)
T 3dw8_B          368 MFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN---NLYIFQ  443 (447)
T ss_dssp             EEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS---CEEEEE
T ss_pred             EEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc---eeeeec
Confidence            99999887653 21111                            01234578899999999999999743   477775


Q ss_pred             c
Q 010784          469 F  469 (501)
Q Consensus       469 ~  469 (501)
                      -
T Consensus       444 ~  444 (447)
T 3dw8_B          444 D  444 (447)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-36  Score=289.17  Aligned_cols=279  Identities=19%  Similarity=0.238  Sum_probs=230.2

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc-CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD-HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      ++++.+++  ..+++++.|+.|++|+..++ +....+.. |...|++++|+|             ++++|++|+.||.|+
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~-~~~~~~~~~~~~~v~~v~~s~-------------~~~~l~~~~~dg~i~  159 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSG-SVSALAETDESTYVASVKWSH-------------DGSFLSVGLGNGLVD  159 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTC-CEEEEEECCTTCCEEEEEECT-------------TSSEEEEEETTSCEE
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCC-cEeEeeecCCCCCEEEEEECC-------------CCCEEEEECCCCeEE
Confidence            45566665  44677889999999999986 55555544 899999999999             899999999999999


Q ss_pred             Eec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784          192 LWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH  269 (501)
Q Consensus       192 vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  269 (501)
                      +||  .++.+..+.+|...|.+++|.      +++|++|+.||.|++||++....     ....+.+|...|.+++|+| 
T Consensus       160 iwd~~~~~~~~~~~~~~~~v~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~-  227 (401)
T 4aez_A          160 IYDVESQTKLRTMAGHQARVGCLSWN------RHVLSSGSRSGAIHHHDVRIANH-----QIGTLQGHSSEVCGLAWRS-  227 (401)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEEE------TTEEEEEETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECT-
T ss_pred             EEECcCCeEEEEecCCCCceEEEEEC------CCEEEEEcCCCCEEEEecccCcc-----eeeEEcCCCCCeeEEEEcC-
Confidence            999  778888999999999999984      46999999999999999996554     5778889999999999998 


Q ss_pred             CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE
Q 010784          270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH  349 (501)
Q Consensus       270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~  349 (501)
                      ++.+|++|+.||.|++||+++++.                                            +..+..|...|.
T Consensus       228 ~~~~l~s~~~d~~v~iwd~~~~~~--------------------------------------------~~~~~~~~~~v~  263 (401)
T 4aez_A          228 DGLQLASGGNDNVVQIWDARSSIP--------------------------------------------KFTKTNHNAAVK  263 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTCSSE--------------------------------------------EEEECCCSSCCC
T ss_pred             CCCEEEEEeCCCeEEEccCCCCCc--------------------------------------------cEEecCCcceEE
Confidence            788999999999999999987532                                            344566889999


Q ss_pred             EEEEcCCC-cEEEEEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE--ecCCCcEEEEeCCC
Q 010784          350 SFSIMPSK-SLICTGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG--GRDDLRINIWETDT  422 (501)
Q Consensus       350 ~v~~~~~~-~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~--gs~dg~i~iwd~~~  422 (501)
                      +++|+|++ .++++++  .|+ |++||+++++..      ..+. +...|.+++|+|+ +++++  |+.||.|++||+.+
T Consensus       264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~------~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV------NTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             EEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE------EEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             EEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE------EEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            99999975 6777765  677 999999987654      5554 5678999999999 76666  55899999999998


Q ss_pred             cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784          423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      ++.......   .+|...|.+++|+|+|++|++++  .||.|++|++..+...
T Consensus       337 ~~~~~~~~~---~~h~~~v~~~~~s~dg~~l~s~~--~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          337 SGLTKQVDI---PAHDTRVLYSALSPDGRILSTAA--SDENLKFWRVYDGDHV  384 (401)
T ss_dssp             TEEEEEEEE---ECCSSCCCEEEECTTSSEEEEEC--TTSEEEEEECCC----
T ss_pred             ccceeEEEe---cCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEECCCCccc
Confidence            665554321   46788999999999999999999  6699999999887653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-36  Score=310.95  Aligned_cols=269  Identities=20%  Similarity=0.337  Sum_probs=225.6

Q ss_pred             cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C-----CceeeeccCCCCceEEEEeeec
Q 010784          145 YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K-----GSCQRCFKGHNGPVSTLSDKLL  217 (501)
Q Consensus       145 ~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~-----~~~~~~~~~h~~~v~~l~~s~~  217 (501)
                      ....+++|.+.|++++|+|+            ++++|+||+.||+|++||  .     +.....+.+|...|.+++|+  
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~------------~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--  439 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPID------------NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS--  439 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTT------------CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC--
T ss_pred             hhhhcccCCceeEEEEecCC------------CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC--
Confidence            34567899999999999984            468999999999999998  2     23456788999999999997  


Q ss_pred             CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784          218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  297 (501)
                        +++++|++|+.||+|++||+.++.      ....+.+|...|.+++|+| ++.+|++|+.|++|++||+.......  
T Consensus       440 --~~g~~l~sgs~Dg~v~vwd~~~~~------~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~--  508 (694)
T 3dm0_A          440 --SDGQFALSGSWDGELRLWDLAAGV------STRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYT--  508 (694)
T ss_dssp             --TTSSEEEEEETTSEEEEEETTTTE------EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEE--
T ss_pred             --CCCCEEEEEeCCCcEEEEECCCCc------ceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCccee--
Confidence              899999999999999999999876      4778889999999999998 78899999999999999976532100  


Q ss_pred             ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC--cEEEEEcCCc-EEEEecC
Q 010784          298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK--SLICTGGIGK-AMTWDIR  374 (501)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~--~~l~~~~~d~-i~iwd~~  374 (501)
                                                             ......+|...|.+++|+|++  .++++++.|+ |++||++
T Consensus       509 ---------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~  549 (694)
T 3dm0_A          509 ---------------------------------------ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS  549 (694)
T ss_dssp             ---------------------------------------ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT
T ss_pred             ---------------------------------------eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC
Confidence                                                   001123588899999999986  6899999888 9999999


Q ss_pred             CCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE
Q 010784          375 RSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI  453 (501)
Q Consensus       375 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  453 (501)
                      +.+..      ..+.+|.+.|++++|+|+ +++++|+.||.|++||+.+++.+..+.      +...+.+++|+|++.+|
T Consensus       550 ~~~~~------~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~sp~~~~l  617 (694)
T 3dm0_A          550 NCKLR------STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE------ANSVIHALCFSPNRYWL  617 (694)
T ss_dssp             TCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB------CSSCEEEEEECSSSSEE
T ss_pred             CCcEE------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec------CCCcEEEEEEcCCCcEE
Confidence            86544      788999999999999999 999999999999999999999888773      24579999999999999


Q ss_pred             EEeecCCCceEEEeeccC----------------------------------------CccceeecCCCCceeeecccC
Q 010784          454 VTASYGEPGLLQFRDFSN----------------------------------------ATCPVLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       454 ~s~~~d~~g~i~~w~~~~----------------------------------------~~~~~~s~~~d~~~~~w~~~~  492 (501)
                      ++++   ++.|++||+..                                        ++..+++|+.||.+++|++..
T Consensus       618 ~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          618 CAAT---EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             EEEE---TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEEc---CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            8875   35699998643                                        334577999999999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-35  Score=289.28  Aligned_cols=290  Identities=20%  Similarity=0.290  Sum_probs=239.1

Q ss_pred             ccceecccCCcce-eEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784          144 YYRATLSDHKARI-TCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       144 ~~~~~~~~h~~~V-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~  220 (501)
                      .....+.+|.+.| .++.+               ++++|++|+.||+|++||  +++.+..+.+|.+.|.+++|+    +
T Consensus       112 ~~~~~l~~h~~~v~~~~~~---------------~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~----~  172 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF---------------EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA----H  172 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE---------------ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----S
T ss_pred             cceEEEcCCCCCcEEEEEE---------------CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEc----C
Confidence            3456788999885 66666               458999999999999999  788889999999999999996    5


Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec-CCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                      ++ +|++|+.||+|++||+.++.      ....+.+|...|.++++++. ++.++++|+.||.|++||++++........
T Consensus       173 ~~-~l~s~s~dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  245 (464)
T 3v7d_B          173 GG-ILVSGSTDRTVRVWDIKKGC------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE  245 (464)
T ss_dssp             TT-EEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-----
T ss_pred             CC-EEEEEeCCCCEEEEECCCCc------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccc
Confidence            55 99999999999999999876      47888899999999999963 668999999999999999998764322110


Q ss_pred             -----------------c-cceecCCCceeeecCCCeEEEEeC-CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784          300 -----------------V-GMTSVPGVPVDMKCHESMLYIASG-SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI  360 (501)
Q Consensus       300 -----------------~-~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l  360 (501)
                                       . ....+...+.++..++..++.++. +.|++||+++++.+..+.+|...|.+++|+|+++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  325 (464)
T 3v7d_B          246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC  325 (464)
T ss_dssp             -CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred             cCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEE
Confidence                             0 011334455566666666666654 599999999999999999999999999999999999


Q ss_pred             EEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCc
Q 010784          361 CTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADI  439 (501)
Q Consensus       361 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  439 (501)
                      ++|+.|+ |++||+++++..      ..+.+|...|.++++++ .++++|+.||.|++||+.+++....+      .+..
T Consensus       326 ~sg~~dg~i~vwd~~~~~~~------~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~------~~~~  392 (464)
T 3v7d_B          326 ISASMDTTIRIWDLENGELM------YTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY------HHTN  392 (464)
T ss_dssp             EEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEE------ECTT
T ss_pred             EEEeCCCcEEEEECCCCcEE------EEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeee------cCCC
Confidence            9999999 999999987654      88999999999999986 46666679999999999988766655      2456


Q ss_pred             ceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784          440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      .+..++|++++++|++|+ |  |.|++||+.++...
T Consensus       393 ~~~~~~~~~~~~~l~~~~-d--g~i~iwd~~~g~~~  425 (464)
T 3v7d_B          393 LSAITTFYVSDNILVSGS-E--NQFNIYNLRSGKLV  425 (464)
T ss_dssp             CCCEEEEEECSSEEEEEE-T--TEEEEEETTTCCEE
T ss_pred             CccEEEEEeCCCEEEEec-C--CeEEEEECCCCcEE
Confidence            678889999999999987 4  89999998876643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.8e-37  Score=282.43  Aligned_cols=256  Identities=16%  Similarity=0.191  Sum_probs=204.3

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      .+..|..+|++++|+++|.+||+|+.|+.|++||+.++. ..+..+.+|.+.|++++|++..           ++++|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~-----------~~~~l~s   76 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM-----------YGNILAS   76 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG-----------GSSCEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC-----------CCCEEEE
Confidence            445678889999999999999999999999999998753 3567899999999999998621           4789999


Q ss_pred             eeCCCceEEec--CC--ceeeeccCCCCceEEEEeeecCCCC--CCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          184 SSCDHSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGS--GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       184 ~~~dg~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      |+.|++|++||  .+  .....+.+|...|.+++|+    |+  +.+|++|+.||.|++||+..+..   ......+.+|
T Consensus        77 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~----p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h  149 (316)
T 3bg1_A           77 CSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA----PHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAH  149 (316)
T ss_dssp             EETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEEC----CTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSS
T ss_pred             EECCCEEEEEECCCCcceEEEEccCCCCceEEEEEC----CCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeeccc
Confidence            99999999999  33  3556788999999999997    44  78999999999999999987532   1124566789


Q ss_pred             CCceeEEEEeecC----------------CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEE
Q 010784          258 EKPIKLMSVAGHK----------------SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYI  321 (501)
Q Consensus       258 ~~~v~~l~~~~~~----------------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (501)
                      ...|.+++|+|..                +.+|++|+.|+.|++||++....                            
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~----------------------------  201 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ----------------------------  201 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC----------------------------
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc----------------------------
Confidence            9999999999742                35789999999999999864311                            


Q ss_pred             EeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC----cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeE
Q 010784          322 ASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK----SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVT  396 (501)
Q Consensus       322 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  396 (501)
                                   .+.+..+.+|...|.+++|+|++    .+|++++.|+ |++||+......  ......+..|...|.
T Consensus       202 -------------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~--~~~~~~~~~~~~~v~  266 (316)
T 3bg1_A          202 -------------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN--TWSPKLLHKFNDVVW  266 (316)
T ss_dssp             -------------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC--CCBCCEEEECSSCEE
T ss_pred             -------------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc--chhhhhhhcCCCcEE
Confidence                         02334567899999999999986    8999999998 999999863211  011234567889999


Q ss_pred             EEEecCC-eEEEEecCCCcEEEEeCC
Q 010784          397 QLHMDPY-KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       397 ~l~~~~~-~~l~~gs~dg~i~iwd~~  421 (501)
                      +++|+|+ ++|++++.||.|++|+..
T Consensus       267 ~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          267 HVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999999 888988999999999975

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.6e-37  Score=281.63  Aligned_cols=257  Identities=17%  Similarity=0.201  Sum_probs=200.5

Q ss_pred             eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCCC
Q 010784          147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~~  222 (501)
                      ..+.+|.+.|++++|+|             +|++|++|+.|++|+|||  .+.  .+..+.+|.+.|.+++|++  +.++
T Consensus         7 ~~~~~H~~~V~~v~~s~-------------~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~--~~~~   71 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDY-------------YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH--PMYG   71 (316)
T ss_dssp             -------CCEEEEEECG-------------GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECC--GGGS
T ss_pred             eecccccCeEEEeeEcC-------------CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCC--CCCC
Confidence            45679999999999999             899999999999999999  443  4677899999999999962  1147


Q ss_pred             CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      ++|++|+.|++|++||+.++..    .....+.+|...|.+++|+|+. +.+|++|+.|+.|++||++.+...       
T Consensus        72 ~~l~s~s~D~~v~iWd~~~~~~----~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~-------  140 (316)
T 3bg1_A           72 NILASCSYDRKVIIWREENGTW----EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW-------  140 (316)
T ss_dssp             SCEEEEETTSCEEEECCSSSCC----CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-------
T ss_pred             CEEEEEECCCEEEEEECCCCcc----eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-------
Confidence            8999999999999999987641    1456678899999999999852 779999999999999999865210       


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-----------------CcEEEEEc
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-----------------KSLICTGG  364 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-----------------~~~l~~~~  364 (501)
                                                        .....+.+|...+.+++|+|+                 +++|++|+
T Consensus       141 ----------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs  186 (316)
T 3bg1_A          141 ----------------------------------EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG  186 (316)
T ss_dssp             ----------------------------------EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB
T ss_pred             ----------------------------------ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEec
Confidence                                              001223456667777777776                 47899999


Q ss_pred             CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-----eEEEEecCCCcEEEEeCCCcc----cccccccCCC
Q 010784          365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-----KIVTGGRDDLRINIWETDTGM----LANSLLCNYP  434 (501)
Q Consensus       365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~l~~gs~dg~i~iwd~~~~~----~~~~~~~~~~  434 (501)
                      .|+ |++||++....   ..++..+.+|...|++++|+|+     .+|++|+.||+|++|++.+..    ....+     
T Consensus       187 ~D~~v~lWd~~~~~~---~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-----  258 (316)
T 3bg1_A          187 CDNLIKLWKEEEDGQ---WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL-----  258 (316)
T ss_dssp             TTSBCCEEEECTTSC---EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE-----
T ss_pred             CCCeEEEEEeCCCCc---cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh-----
Confidence            988 99999975421   1234678899999999999996     589999999999999997632    12223     


Q ss_pred             CCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          435 EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       435 ~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      ..|...|.+++|+|+|++|++++  .|+.|++|+....+
T Consensus       259 ~~~~~~v~~v~~sp~g~~las~~--~D~~v~lw~~~~~g  295 (316)
T 3bg1_A          259 HKFNDVVWHVSWSITANILAVSG--GDNKVTLWKESVDG  295 (316)
T ss_dssp             EECSSCEEEEEECTTTCCEEEEE--SSSCEEEEEECTTS
T ss_pred             hcCCCcEEEEEEcCCCCEEEEEc--CCCeEEEEEECCCC
Confidence            34577899999999999999999  66999999987544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.9e-35  Score=307.13  Aligned_cols=348  Identities=17%  Similarity=0.150  Sum_probs=278.6

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ..+..+..+|++++|+|++.++++|+.|+.|++||+.++ +.+..+.+|.+.|++++|+|             ++.+|++
T Consensus        49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~v~~~~~s~-------------~~~~l~~  114 (814)
T 3mkq_A           49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-EKVVDFEAHPDYIRSIAVHP-------------TKPYVLS  114 (814)
T ss_dssp             EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECS-------------SSSEEEE
T ss_pred             EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCEEEEEEeC-------------CCCEEEE
Confidence            455568888999999999999999999999999999985 78888999999999999999             8899999


Q ss_pred             eeCCCceEEec--CC-ceeeeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeecc-CCC
Q 010784          184 SSCDHSIRLWW--KG-SCQRCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHE  258 (501)
Q Consensus       184 ~~~dg~i~vwd--~~-~~~~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~  258 (501)
                      ++.||+|++||  .+ .....+.+|...|.+++|+    | ++..|++|+.||.|++||+.++..      ...+. .+.
T Consensus       115 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~~dg~v~vwd~~~~~~------~~~~~~~~~  184 (814)
T 3mkq_A          115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN----PKDPSTFASGCLDRTVKVWSLGQSTP------NFTLTTGQE  184 (814)
T ss_dssp             EETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEE----TTEEEEEEEEETTSEEEEEETTCSSC------SEEEECCCT
T ss_pred             EcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEE----cCCCCEEEEEeCCCeEEEEECCCCcc------eeEEecCCC
Confidence            99999999999  33 6677888999999999998    6 788999999999999999987664      34444 455


Q ss_pred             CceeEEEEeec-CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe---CCcEEEEEcCC
Q 010784          259 KPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS---GSSVVTIDLRT  334 (501)
Q Consensus       259 ~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~  334 (501)
                      ..+.+++|+|. ++.++++++.||.|++||+++++.+....     .+...+.++.++++..++++   ++.|++||+.+
T Consensus       185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-----GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            88999999973 57799999999999999999876543321     34556777777776544333   35899999999


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCc--EEEEEcCCcEEEEecCCCCCCCC-------------------------------
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKS--LICTGGIGKAMTWDIRRSQDAVK-------------------------------  381 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~--~l~~~~~d~i~iwd~~~~~~~~~-------------------------------  381 (501)
                      ++.+..+..|...+.+++|+|++.  ++++++++++.+|++........                               
T Consensus       260 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (814)
T 3mkq_A          260 YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEV  339 (814)
T ss_dssp             CSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred             CcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccc
Confidence            999999999999999999999987  67777777799998765432100                               


Q ss_pred             ------CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEE
Q 010784          382 ------PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIV  454 (501)
Q Consensus       382 ------~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  454 (501)
                            ......+..+...+.+++|+|+ +++++++ ||.+.+|++.....          .+...+.+++|+|+|++++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~----------~~~~~i~~~~~spdg~~la  408 (814)
T 3mkq_A          340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN----------KAFGKCQDFVWGPDSNSYA  408 (814)
T ss_dssp             CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE----------EEEEECSEEEECTTSSCEE
T ss_pred             ccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc----------cCCCceEEEEEeCCCCeEE
Confidence                  0001112334557899999999 8888875 89999999753322          1235688999999999999


Q ss_pred             EeecCCCceEEEeec-------------cCCc---cceeecCCCCceeeecccCC
Q 010784          455 TASYGEPGLLQFRDF-------------SNAT---CPVLKHEVQNDSKFWGPQCY  493 (501)
Q Consensus       455 s~~~d~~g~i~~w~~-------------~~~~---~~~~s~~~d~~~~~w~~~~~  493 (501)
                      +++  .+|.|++|+.             ++.+   ..+++++.|+.+++|+++..
T Consensus       409 ~~~--~~g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~  461 (814)
T 3mkq_A          409 LID--ETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNG  461 (814)
T ss_dssp             EEC--TTCCEEEEETTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTC
T ss_pred             EEe--CCCcEEEEECCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcC
Confidence            998  6699999962             2333   36777888999999998754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.2e-35  Score=272.98  Aligned_cols=277  Identities=14%  Similarity=0.190  Sum_probs=232.5

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccc--cceecc--cCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY--YRATLS--DHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~--~~~~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      ....|..+|++++|+|++.++++++ |+.+++|++.++..  ....+.  +|...|++++|+|             ++++
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~  111 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-------------DGCT  111 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-------------TSSE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-------------CCCE
Confidence            3456888899999999999999999 99999999987522  222333  7999999999999             8899


Q ss_pred             EEEeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          181 LVTSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       181 l~s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      |++++.||.|++||  .++  ....+..|...|.+++|+    ++++++++++.||.|++||+.+++      ....+..
T Consensus       112 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~dg~v~~~d~~~~~------~~~~~~~  181 (337)
T 1gxr_A          112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS----PDSKVCFSCCSDGNIAVWDLHNQT------LVRQFQG  181 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC----TTSSEEEEEETTSCEEEEETTTTE------EEEEECC
T ss_pred             EEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC----CCCCEEEEEeCCCcEEEEeCCCCc------eeeeeec
Confidence            99999999999999  333  556778899999999997    789999999999999999999876      4778888


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEE--e-CCcEEEEEcC
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA--S-GSSVVTIDLR  333 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~i~~~d~~  333 (501)
                      |...|.+++|+| ++.+|++++.||.|++||+++++....      ......+.++.++++..+++  . ++.+++||++
T Consensus       182 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~  254 (337)
T 1gxr_A          182 HTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQ------HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN  254 (337)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEE------EECSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEee------ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence            999999999998 788999999999999999998865433      24455667777766544333  3 3589999999


Q ss_pred             CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC
Q 010784          334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD  411 (501)
Q Consensus       334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~  411 (501)
                      +.+.. .+..|...|.+++|+|++++|++++.++ |++||+.+++..      . ...|...|++++|+|+ +++++++.
T Consensus       255 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~------~-~~~~~~~v~~~~~s~~~~~l~~~~~  326 (337)
T 1gxr_A          255 KPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI------F-QSKESSSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             SSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE------E-EEECSSCEEEEEECTTSCEEEEEET
T ss_pred             CCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE------E-EecCCCcEEEEEECCCCCEEEEecC
Confidence            88754 5677899999999999999999999888 999999987643      2 2357889999999999 88888899


Q ss_pred             CCcEEEEeC
Q 010784          412 DLRINIWET  420 (501)
Q Consensus       412 dg~i~iwd~  420 (501)
                      ||.|++|++
T Consensus       327 dg~i~iw~~  335 (337)
T 1gxr_A          327 DKKATVYEV  335 (337)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999999996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.8e-37  Score=289.92  Aligned_cols=251  Identities=10%  Similarity=0.047  Sum_probs=199.6

Q ss_pred             cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CC--ceeeeccCCCCceEEEEeeecCCCCCCE
Q 010784          149 LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGSGKI  224 (501)
Q Consensus       149 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~~~~  224 (501)
                      +..|.++|++++|+|             ++++|++|+.||.|++||  .+  +.+..+.+|...|.+++|+    +++++
T Consensus         7 ~~~~~~~v~~~~~s~-------------~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s----~~~~~   69 (377)
T 3dwl_C            7 LHILPKPSYEHAFNS-------------QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWA----PKSNR   69 (377)
T ss_dssp             EEECSSCCSCCEECS-------------SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEEC----TTTCC
T ss_pred             EecCCCcEEEEEECC-------------CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEe----CCCCE
Confidence            345678899999999             899999999999999999  55  6788899999999999997    88999


Q ss_pred             EEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784          225 LASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       225 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                      |++|+.||.|++||+.++..   ......+.+|...|.+++|+| ++++|++++.|+.|++||+++++..          
T Consensus        70 l~s~s~d~~v~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~----------  135 (377)
T 3dwl_C           70 IVTCSQDRNAYVYEKRPDGT---WKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDW----------  135 (377)
T ss_dssp             EEEEETTSSEEEC------C---CCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----C----------
T ss_pred             EEEEeCCCeEEEEEcCCCCc---eeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccc----------
Confidence            99999999999999998751   123567788999999999998 7889999999999999999876421          


Q ss_pred             cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc-CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC--
Q 010784          305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI-CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV--  380 (501)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~--  380 (501)
                                                     .....+.. |...|.+++|+|++++|++++.|+ |++||+...+...  
T Consensus       136 -------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  184 (377)
T 3dwl_C          136 -------------------------------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP  184 (377)
T ss_dssp             -------------------------------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred             -------------------------------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence                                           11234445 889999999999999999999988 9999996433110  


Q ss_pred             ----------CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc----ccccccCCCCCCCcceeeeE
Q 010784          381 ----------KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML----ANSLLCNYPEEADISTGCSA  445 (501)
Q Consensus       381 ----------~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~  445 (501)
                                ...++..+ +|...|++++|+|+ +++++++.||.|++||+.+++.    +..+     ..|...|.+++
T Consensus       185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~v~~~~  258 (377)
T 3dwl_C          185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV-----KLSQLPLRSLL  258 (377)
T ss_dssp             CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE-----ECSSSCEEEEE
T ss_pred             cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee-----cCCCCceEEEE
Confidence                      02234555 89999999999999 8888889999999999999987    7777     56788899999


Q ss_pred             eeccccEEEEeecCCCceEEEeecc
Q 010784          446 MAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       446 ~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      |+|+|++|++++  +++.+ +|+..
T Consensus       259 ~s~~~~~l~~~~--~~~~~-~~~~~  280 (377)
T 3dwl_C          259 WANESAIVAAGY--NYSPI-LLQGN  280 (377)
T ss_dssp             EEETTEEEEEES--SSSEE-EECCC
T ss_pred             EcCCCCEEEEEc--CCcEE-EEEeC
Confidence            999999999987  44655 55543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.8e-35  Score=285.27  Aligned_cols=281  Identities=14%  Similarity=0.089  Sum_probs=212.8

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CC--ceeeeccCCCCceEEEEeeecCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGD  219 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~  219 (501)
                      .......+|...|+||+|+|.            ++++||+|+.||+|+|||  .+  .....+.+|.+.|++|+|+|   
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~------------~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p---  174 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPT------------HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP---  174 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSS------------CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECS---
T ss_pred             eecccCCCCCCCEEEEEEeCC------------CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeC---
Confidence            344556789999999999994            568999999999999999  33  33455678999999999972   


Q ss_pred             CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784          220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                      .++++|++|+.||+|++||++++..    ........+...+.+++|++ ++.+|++|+.||.|++||++...       
T Consensus       175 ~~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~-------  242 (435)
T 4e54_B          175 LNTNQFYASSMEGTTRLQDFKGNIL----RVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE-------  242 (435)
T ss_dssp             SCTTEEEEECSSSCEEEEETTSCEE----EEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB-------
T ss_pred             CCCCEEEEEeCCCEEEEeeccCCce----eEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce-------
Confidence            3688999999999999999986532    11222233455678999997 78899999999999999986532       


Q ss_pred             ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc-EEEEEcCCc-EEEEecCCCC
Q 010784          300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS-LICTGGIGK-AMTWDIRRSQ  377 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~d~-i~iwd~~~~~  377 (501)
                                                            +..+.+|...|.+++|+|++. ++++|+.|+ |++||+++.+
T Consensus       243 --------------------------------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~  284 (435)
T 4e54_B          243 --------------------------------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR  284 (435)
T ss_dssp             --------------------------------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred             --------------------------------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence                                                  234567899999999999865 788899888 9999999876


Q ss_pred             CCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCC-CCCcceeeeEeeccccEEEE
Q 010784          378 DAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPE-EADISTGCSAMAVSGCRIVT  455 (501)
Q Consensus       378 ~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s  455 (501)
                      ..   ..+....+|...|++++|+|+ .+|++|+.||.|+|||+.+++....+..+... .....+..+.|+|++.++++
T Consensus       285 ~~---~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (435)
T 4e54_B          285 GK---ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV  361 (435)
T ss_dssp             SS---SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred             cc---ceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEE
Confidence            53   223445679999999999999 88999999999999999999887777544321 11122344578888887777


Q ss_pred             eecC----------CCceEEEeeccC-----------------------CccceeecCCCCceeeecccCC
Q 010784          456 ASYG----------EPGLLQFRDFSN-----------------------ATCPVLKHEVQNDSKFWGPQCY  493 (501)
Q Consensus       456 ~~~d----------~~g~i~~w~~~~-----------------------~~~~~~s~~~d~~~~~w~~~~~  493 (501)
                      ++.+          +++.|++||...                       .+..+++|+ |+.+++|+++.+
T Consensus       362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence            6542          346799998543                       233455554 788999998754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.5e-35  Score=274.25  Aligned_cols=281  Identities=11%  Similarity=0.043  Sum_probs=233.1

Q ss_pred             ecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc--ccceecccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEe
Q 010784          108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES--YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTS  184 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~  184 (501)
                      .|...|++++|+|++.++++|+.|+.|++|++.++.  .....+.+|...|++++|+|             +++ +|++|
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~~l~~~   75 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-------------NTDLQIYVG   75 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-------------SSSEEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-------------CCCcEEEEE
Confidence            466779999999999999999999999999998752  13455669999999999999             789 99999


Q ss_pred             eCCCceEEecC--CceeeeccC--CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC---------CCccccccce
Q 010784          185 SCDHSIRLWWK--GSCQRCFKG--HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS---------SGKRGQQALK  251 (501)
Q Consensus       185 ~~dg~i~vwd~--~~~~~~~~~--h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~~  251 (501)
                      +.||.|++||.  ......+.+  |...|.+++|+    + +++|++++.|+.|++||+.+         +.      ++
T Consensus        76 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~----~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~  144 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKY----G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL------NS  144 (342)
T ss_dssp             ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE----T-TTEEEEEETTSEEEEECHHHHTTBCEEEEES------CS
T ss_pred             cCCCeEEEEEeccCCceEeccccCCCCceEEEEeC----C-CCEEEEEcCCCeEEEEcccccccccccccCC------ee
Confidence            99999999983  445577788  99999999997    6 89999999999999999987         44      34


Q ss_pred             eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC-CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEE
Q 010784          252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI  330 (501)
Q Consensus       252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  330 (501)
                      ..+. |...|.+++|++ +.  +++++.|+.|++||+++ +...                                    
T Consensus       145 ~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~------------------------------------  184 (342)
T 1yfq_A          145 NNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDN------------------------------------  184 (342)
T ss_dssp             SSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCC------------------------------------
T ss_pred             eEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCcccccc------------------------------------
Confidence            4555 889999999986 33  99999999999999987 4321                                    


Q ss_pred             EcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCC--CCCCCCCCcccccCccc---------CeEE
Q 010784          331 DLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRS--QDAVKPQPMAELDGHVG---------SVTQ  397 (501)
Q Consensus       331 d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~--~~~~~~~~~~~~~~h~~---------~v~~  397 (501)
                            .......|...+.+++|+| +++++++++.++ |++|++...  ...  ......+..|..         .|++
T Consensus       185 ------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~  256 (342)
T 1yfq_A          185 ------GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN--SSKRFAFRCHRLNLKDTNLAYPVNS  256 (342)
T ss_dssp             ------CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT--CTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred             ------ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc--cccceeeecccccccccccceeEEE
Confidence                  0112234678899999999 999999999998 999999876  111  133466777754         9999


Q ss_pred             EEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCC-CcceeeeEeeccccEEEEeecCCCce-EEEeec
Q 010784          398 LHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEA-DISTGCSAMAVSGCRIVTASYGEPGL-LQFRDF  469 (501)
Q Consensus       398 l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~s~~~d~~g~-i~~w~~  469 (501)
                      ++|+|+ ++|++|+.||.|++||+.+++.+..+     ..| ...|.+++  |++++|++++  .||. .+.+..
T Consensus       257 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~h~~~v~~~~--~~~~~l~s~s--~Dg~~~~~~~~  322 (342)
T 1yfq_A          257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF-----AKFNEDSVVKIA--CSDNILCLAT--SDDTFKTNAAI  322 (342)
T ss_dssp             EEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-----CCCSSSEEEEEE--ECSSEEEEEE--ECTHHHHCSSS
T ss_pred             EEEcCCCCEEEEecCCceEEEEcCccHhHhhhh-----hcccCCCceEec--CCCCeEEEEe--cCCcccccccc
Confidence            999999 88888899999999999999999888     455 78899998  9999999999  5587 555553

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.6e-35  Score=280.42  Aligned_cols=284  Identities=17%  Similarity=0.206  Sum_probs=231.3

Q ss_pred             CCceEEeeCCcEEEe-ecCCeeeEEEEeccccc---ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          112 PHDHILLDNNDIFST-QGSSIQNIKIDNFLSES---YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~-~g~~d~~i~vw~~~~~~---~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      ..+.++++++...++ +|+.+|.|+||++....   .....+.+|.+.|++++|+|.            ++++|++|+.|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~------------~~~~l~s~s~d  103 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH------------NDNVIASGSED  103 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT------------CTTEEEEEETT
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC------------CCCEEEEEeCC
Confidence            367789998886554 68899999999986532   345668899999999999984            57899999999


Q ss_pred             CceEEec--CC-------ceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCccccccceeec--c
Q 010784          188 HSIRLWW--KG-------SCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQQALKATL--Y  255 (501)
Q Consensus       188 g~i~vwd--~~-------~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--~  255 (501)
                      |+|++||  .+       ..+..+.+|...|.+++|+    +++ ++|++|+.||.|++||+.+++      ....+  .
T Consensus       104 g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----p~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~  173 (402)
T 2aq5_A          104 CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH----PTAQNVLLSAGCDNVILVWDVGTGA------AVLTLGPD  173 (402)
T ss_dssp             SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEEC----SSBTTEEEEEETTSCEEEEETTTTE------EEEEECTT
T ss_pred             CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEEC----cCCCCEEEEEcCCCEEEEEECCCCC------ccEEEecC
Confidence            9999999  43       4577888999999999997    776 699999999999999999876      46667  7


Q ss_pred             CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784          256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM  335 (501)
Q Consensus       256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  335 (501)
                      .|...|.+++|+| ++.+|++++.||.|++||+++++.                                          
T Consensus       174 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~------------------------------------------  210 (402)
T 2aq5_A          174 VHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTV------------------------------------------  210 (402)
T ss_dssp             TCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEE------------------------------------------
T ss_pred             CCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCce------------------------------------------
Confidence            8999999999998 788999999999999999988643                                          


Q ss_pred             ceEeee-ccCCCc-EEEEEEcCCCcEEEEE---cCCc-EEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-eEE-
Q 010784          336 QKVMTP-AICKPI-LHSFSIMPSKSLICTG---GIGK-AMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-KIV-  406 (501)
Q Consensus       336 ~~~~~~-~~~~~~-v~~v~~~~~~~~l~~~---~~d~-i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-~~l-  406 (501)
                        +..+ ..|.+. +.++.|+|++.++++|   +.++ |++||+++.+..     +... ..|...+.+++|+|+ .++ 
T Consensus       211 --~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~  283 (402)
T 2aq5_A          211 --VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-----LSLQELDTSSGVLLPFFDPDTNIVY  283 (402)
T ss_dssp             --EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-----SEEEECCCCSSCEEEEEETTTTEEE
T ss_pred             --eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-----ceEEeccCCCceeEEEEcCCCCEEE
Confidence              2233 456554 8899999999999999   7788 999999986542     1222 246778999999999 544 


Q ss_pred             EEecCCCcEEEEeCCCccc-ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          407 TGGRDDLRINIWETDTGML-ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       407 ~~gs~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      ++|+.||.|++||+.+++. +..+..+   .+...+.+++|+|++.+++++    ++.+++|++..+..
T Consensus       284 ~~g~~dg~i~i~d~~~~~~~~~~l~~~---~~~~~v~~~~~sp~~~~~~s~----~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          284 LCGKGDSSIRYFEITSEAPFLHYLSMF---SSKESQRGMGYMPKRGLEVNK----CEIARFYKLHERKC  345 (402)
T ss_dssp             EEETTCSCEEEEEECSSTTCEEEEEEE---CCSSCCSEEEECCGGGSCGGG----TEEEEEEEEETTEE
T ss_pred             EEEcCCCeEEEEEecCCCcceEeeccc---ccCCcccceEEecccccceec----ceeEEEEEcCCCcE
Confidence            5777899999999998874 4444322   246889999999999988754    36999999987654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-35  Score=278.80  Aligned_cols=263  Identities=19%  Similarity=0.176  Sum_probs=216.8

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CCceeeeccCCCCceEEEEeeecCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGD  219 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~  219 (501)
                      +++..+.+|.+.|++++|+|             ++++|++|+.||.|+|||    .+..+..+.+|...|++++|+    
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~-------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~----   64 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDY-------------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA----   64 (379)
T ss_dssp             ---CCEEECCCCEEEEEECS-------------SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC----
T ss_pred             CccEEecCCcccEEEEEEcC-------------CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeC----
Confidence            45678899999999999999             899999999999999998    345567788999999999996    


Q ss_pred             CC--CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccc
Q 010784          220 GS--GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRS  296 (501)
Q Consensus       220 ~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~  296 (501)
                      ++  +++|++|+.||.|++||+.++..    .....+..|...|.+++|+|.. +.+|++++.|+.|++||+++....  
T Consensus        65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--  138 (379)
T 3jrp_A           65 HPKFGTILASCSYDGKVLIWKEENGRW----SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--  138 (379)
T ss_dssp             CGGGCSEEEEEETTSCEEEEEEETTEE----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC--
T ss_pred             CCCCCCEEEEeccCCEEEEEEcCCCce----eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce--
Confidence            44  89999999999999999998741    2466778899999999999842 789999999999999999876321  


Q ss_pred             eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-------------CCcEEEEE
Q 010784          297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-------------SKSLICTG  363 (501)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-------------~~~~l~~~  363 (501)
                                                              ....+..|...|.+++|+|             ++.+++++
T Consensus       139 ----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~  178 (379)
T 3jrp_A          139 ----------------------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG  178 (379)
T ss_dssp             ----------------------------------------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred             ----------------------------------------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence                                                    1123456889999999999             69999999


Q ss_pred             cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC----eEEEEecCCCcEEEEeCCCcccccccccCCCCCCC
Q 010784          364 GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY----KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEAD  438 (501)
Q Consensus       364 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~  438 (501)
                      +.|+ |++||+++....  ...+..+.+|...|++++|+|+    .++++++.||.|++||+.++.............|.
T Consensus       179 ~~dg~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  256 (379)
T 3jrp_A          179 GADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP  256 (379)
T ss_dssp             ETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCS
T ss_pred             eCCCeEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCC
Confidence            9888 999999886543  2345678889999999999996    78888899999999999987532222111224577


Q ss_pred             cceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          439 ISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       439 ~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      ..|.+++|+|+|++|++++  .||.|++|++..+.
T Consensus       257 ~~v~~~~~s~~g~~l~~~~--~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          257 DVLWRASWSLSGNVLALSG--GDNKVTLWKENLEG  289 (379)
T ss_dssp             SCEEEEEECSSSCCEEEEE--SSSSEEEEEEEETT
T ss_pred             CcEEEEEEcCCCCEEEEec--CCCcEEEEeCCCCC
Confidence            8899999999999999999  66999999998654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.9e-34  Score=277.07  Aligned_cols=299  Identities=20%  Similarity=0.336  Sum_probs=247.6

Q ss_pred             ccceecccCCcce-eEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784          144 YYRATLSDHKARI-TCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       144 ~~~~~~~~h~~~V-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~  220 (501)
                      +....+.+|.+.| +++.  +             ++++|++|+.||+|++||  +++.+..+.+|.+.|.+++|+     
T Consensus       109 ~~~~~l~~h~~~v~~~~~--~-------------~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-----  168 (445)
T 2ovr_B          109 KSPKVLKGHDDHVITCLQ--F-------------CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-----  168 (445)
T ss_dssp             CCCEEEECSTTSCEEEEE--E-------------ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-----
T ss_pred             ceeEEecccCCCcEEEEE--E-------------cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec-----
Confidence            3556788999875 5544  4             579999999999999999  788889999999999999984     


Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                       ++++++|+.||.|++||+.+++      ....+.+|...|.++.++   +..+++|+.||.|++||+++++.+....  
T Consensus       169 -~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~--  236 (445)
T 2ovr_B          169 -DNIIISGSTDRTLKVWNAETGE------CIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLM--  236 (445)
T ss_dssp             -TTEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEE--
T ss_pred             -CCEEEEEeCCCeEEEEECCcCc------EEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEc--
Confidence             5699999999999999999876      478888999999999996   3479999999999999999886543322  


Q ss_pred             cceecCCCceeeecCCCeEEEEeC-CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASG-SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD  378 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~  378 (501)
                         .+...+.++.+++..++.++. +.+++||+++++.+..+.+|...|.++.|  ++.++++++.|+ |++||+++++.
T Consensus       237 ---~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~  311 (445)
T 2ovr_B          237 ---GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC  311 (445)
T ss_dssp             ---CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE
T ss_pred             ---CCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE
Confidence               345666777777766666654 58999999999999999999999999999  888999999888 99999998765


Q ss_pred             CCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          379 AVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       379 ~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      .      ..+.+|...+.++.+++. ++++|+.||.|++||+.+++.+..+..+  ..|...|.+++|+  +++|++|+ 
T Consensus       312 ~------~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~--~~~l~s~~-  379 (445)
T 2ovr_B          312 I------HTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGP--NKHQSAVTCLQFN--KNFVITSS-  379 (445)
T ss_dssp             E------EEECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECST--TSCSSCEEEEEEC--SSEEEEEE-
T ss_pred             E------EEEcCCcccEEEEEEeCC-EEEEEeCCCeEEEEECCCCcEEEEEccC--CCCCCCEEEEEEC--CCEEEEEe-
Confidence            4      788899999999988765 5666679999999999999998888532  2467889999985  68999999 


Q ss_pred             CCCceEEEeeccCCc--------------------------cceeecCCCCc----eeeecccC
Q 010784          459 GEPGLLQFRDFSNAT--------------------------CPVLKHEVQND----SKFWGPQC  492 (501)
Q Consensus       459 d~~g~i~~w~~~~~~--------------------------~~~~s~~~d~~----~~~w~~~~  492 (501)
                       .||.|++||+.++.                          ..+++++.||+    +.+|++..
T Consensus       380 -~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          380 -DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             -TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             -CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence             66999999976543                          23456777776    77887754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=287.50  Aligned_cols=280  Identities=15%  Similarity=0.163  Sum_probs=216.0

Q ss_pred             EEeeCCcEEEeecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec
Q 010784          116 ILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW  194 (501)
Q Consensus       116 ~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd  194 (501)
                      ..|++++..+++++      .|+..  .+.+..+ .+|.+.|++++|+|.            ++++|++|+.||+|+|||
T Consensus        33 ~~f~~~~~~~~~~~------~w~~~--g~~~~~~~~~h~~~V~~~~~s~~------------~~~~l~s~s~dg~v~vwd   92 (437)
T 3gre_A           33 KEFGPIQEIVRSPN------MGNLR--GKLIATLMENEPNSITSSAVSPG------------ETPYLITGSDQGVIKIWN   92 (437)
T ss_dssp             GGGCCCCCCCCCCC------GGGCC--CCEEEEECTTTTSCEEEEEEECS------------SSCEEEEEETTSEEEEEE
T ss_pred             hhcCCccccccccc------ccccc--ceEEeeeccCCCCceEEEEECCC------------CCCEEEEecCCceEEEeE
Confidence            35678888888776      37755  4777777 899999999999983            478999999999999998


Q ss_pred             --C---Cce---eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEecc---CCCccc--cccceeec--cC--C
Q 010784          195 --K---GSC---QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLS---SSGKRG--QQALKATL--YG--H  257 (501)
Q Consensus       195 --~---~~~---~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~---~~~~~~--~~~~~~~~--~~--~  257 (501)
                        .   +..   ...+ .|...|.+++|+    +++++|++|+.||.|++||+.   .+....  ....+..+  ..  +
T Consensus        93 ~~~~~~~~~~~~~~~~-~h~~~v~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  167 (437)
T 3gre_A           93 LKEIIVGEVYSSSLTY-DCSSTVTQITMI----PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK  167 (437)
T ss_dssp             HHHHHTTCCCSCSEEE-ECSSCEEEEEEC----TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred             CcccccCcccceeeec-cCCCCEEEEEEe----CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence              2   321   2222 599999999997    789999999999999999995   332100  00011111  11  5


Q ss_pred             CCceeEEEEee-cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          258 EKPIKLMSVAG-HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       258 ~~~v~~l~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      ...+.++.+.. .++.+|++|+.||.|++||+++++.                                           
T Consensus       168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------------------------------------------  204 (437)
T 3gre_A          168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER-------------------------------------------  204 (437)
T ss_dssp             CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE-------------------------------------------
T ss_pred             ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee-------------------------------------------
Confidence            56666776432 2688999999999999999987643                                           


Q ss_pred             eEeeecc--CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc-CcccCeEEEEec----CC-eEEE
Q 010784          337 KVMTPAI--CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD-GHVGSVTQLHMD----PY-KIVT  407 (501)
Q Consensus       337 ~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~----~~-~~l~  407 (501)
                       +..+..  |.+.|++++|+|++++|++|+.|+ |++||+++++..      ..+. .|...|++++++    |+ .+++
T Consensus       205 -~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~s~~~~~l~  277 (437)
T 3gre_A          205 -LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI------RSWSFGDHAPITHVEVCQFYGKNSVIVV  277 (437)
T ss_dssp             -EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE------EEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred             -eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE------EEEecCCCCceEEEEeccccCCCccEEE
Confidence             234444  788999999999999999999999 999999986544      6654 678899999555    55 7999


Q ss_pred             EecCCCcEEEEeCCCcccccccccCCC-------------------C--CCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784          408 GGRDDLRINIWETDTGMLANSLLCNYP-------------------E--EADISTGCSAMAVSGCRIVTASYGEPGLLQF  466 (501)
Q Consensus       408 ~gs~dg~i~iwd~~~~~~~~~~~~~~~-------------------~--~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~  466 (501)
                      +|+.||.|++||+.+++++..+..+..                   .  .|...|.+++|+ ++++|++|+  .||.|++
T Consensus       278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~--~d~~i~~  354 (437)
T 3gre_A          278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE--ATSSIVM  354 (437)
T ss_dssp             EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG--GGTEEEE
T ss_pred             EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC--CCCeEEE
Confidence            999999999999999988777754320                   1  267789999999 889999999  6699999


Q ss_pred             eeccCCc
Q 010784          467 RDFSNAT  473 (501)
Q Consensus       467 w~~~~~~  473 (501)
                      ||+..+.
T Consensus       355 wd~~~~~  361 (437)
T 3gre_A          355 FSLNELS  361 (437)
T ss_dssp             EETTCGG
T ss_pred             EECCCcc
Confidence            9976543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5e-35  Score=276.49  Aligned_cols=253  Identities=11%  Similarity=0.098  Sum_probs=211.0

Q ss_pred             cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCCCCE
Q 010784          149 LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGSGKI  224 (501)
Q Consensus       149 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~  224 (501)
                      +..|.++|++++|+|             ++++|++|+.||.|++||  .++  .+..+.+|...|.+++|+    +++++
T Consensus         4 ~~~~~~~i~~~~~s~-------------~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~   66 (372)
T 1k8k_C            4 HSFLVEPISCHAWNK-------------DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA----PDSNR   66 (372)
T ss_dssp             EESCSSCCCEEEECT-------------TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE----TTTTE
T ss_pred             ecccCCCeEEEEECC-------------CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEe----CCCCE
Confidence            456899999999999             899999999999999999  554  788889999999999998    78999


Q ss_pred             EEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784          225 LASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       225 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                      |++|+.||.|++||+.+++.    .....+..|...|.+++|+| ++.+|++++.|+.|++||++.++....        
T Consensus        67 l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~--------  133 (372)
T 1k8k_C           67 IVTCGTDRNAYVWTLKGRTW----KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWV--------  133 (372)
T ss_dssp             EEEEETTSCEEEEEEETTEE----EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEE--------
T ss_pred             EEEEcCCCeEEEEECCCCee----eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCccee--------
Confidence            99999999999999987652    12344567999999999998 788999999999999999987642110        


Q ss_pred             cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC----
Q 010784          305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA----  379 (501)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~----  379 (501)
                                                      .......|...|.+++|+|++++|++++.++ |++||++.....    
T Consensus       134 --------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  181 (372)
T 1k8k_C          134 --------------------------------CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA  181 (372)
T ss_dssp             --------------------------------EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred             --------------------------------eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccc
Confidence                                            0112245788999999999999999999888 999997532110    


Q ss_pred             --------CCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784          380 --------VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG  450 (501)
Q Consensus       380 --------~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  450 (501)
                              .....+..+.+|...|++++|+|+ .++++++.||.|++||+.+++.+..+     ..|...+.+++|+|++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~  256 (372)
T 1k8k_C          182 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-----ASETLPLLAVTFITES  256 (372)
T ss_dssp             CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-----ECSSCCEEEEEEEETT
T ss_pred             ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE-----ccCCCCeEEEEEecCC
Confidence                    013445778889999999999999 88888899999999999999999988     4567789999999999


Q ss_pred             cEEEEeecCCCceEEEeeccC
Q 010784          451 CRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       451 ~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      ++|++|   .++.|++|++..
T Consensus       257 ~~l~~~---~d~~i~i~~~~~  274 (372)
T 1k8k_C          257 SLVAAG---HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEE---TTSSCEEEEEET
T ss_pred             CEEEEE---eCCeEEEEEccC
Confidence            988887   348999998765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-34  Score=273.97  Aligned_cols=279  Identities=14%  Similarity=0.166  Sum_probs=233.6

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      .....+.+|.+.|++++|+|             ++++|++|+.||.|++||  .++.+..+.+|...|.+++|+    ++
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~-------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~   85 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNK-------------EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVD----CF   85 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECT-------------TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEEC----TT
T ss_pred             cccEEEEEeeceEEEEEEcC-------------CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEc----CC
Confidence            33456789999999999999             899999999999999999  788889999999999999997    78


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECCCCccccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTSTSSAVRS  296 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~  296 (501)
                      +++|++++.||.|++||+.++..      ...+. +...|.+++|+| ++.++++++.+     +.|++||+........
T Consensus        86 ~~~l~s~~~dg~i~iwd~~~~~~------~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~  157 (369)
T 3zwl_B           86 TKYCVTGSADYSIKLWDVSNGQC------VATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHE  157 (369)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCE------EEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcE------EEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCcccee
Confidence            99999999999999999998763      55555 888999999998 78899999998     9999999987654322


Q ss_pred             eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC--cEEEEEEcCCCcEEEEEcCCc-EEEEec
Q 010784          297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP--ILHSFSIMPSKSLICTGGIGK-AMTWDI  373 (501)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~~~~~d~-i~iwd~  373 (501)
                      ...                                 ........+..|..  .+.+++|+|+++++++++.++ |++||+
T Consensus       158 ~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  204 (369)
T 3zwl_B          158 LTK---------------------------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDV  204 (369)
T ss_dssp             EEE---------------------------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             ecc---------------------------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence            110                                 11122234445555  899999999999999999888 999999


Q ss_pred             CCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784          374 RRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR  452 (501)
Q Consensus       374 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  452 (501)
                      ++..     ..+..+..|...|.+++|+|+ .++++++.||.|++||+.+++.+..+.      +...+..++|+|++++
T Consensus       205 ~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~  273 (369)
T 3zwl_B          205 SNNY-----EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE------TDCPLNTAVITPLKEF  273 (369)
T ss_dssp             TTTT-----EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------CSSCEEEEEECSSSSE
T ss_pred             CCCc-----EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec------CCCCceeEEecCCCce
Confidence            9832     224778889999999999999 888888899999999999999988884      4678999999999999


Q ss_pred             EEEeecCCCc--------------eEEEeec---------------------cCCccceeecCCCCceeeecccCC
Q 010784          453 IVTASYGEPG--------------LLQFRDF---------------------SNATCPVLKHEVQNDSKFWGPQCY  493 (501)
Q Consensus       453 l~s~~~d~~g--------------~i~~w~~---------------------~~~~~~~~s~~~d~~~~~w~~~~~  493 (501)
                      +++++.  ++              .+++||.                     .+.+..+++++.|+.+++|++...
T Consensus       274 l~~~~~--~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          274 IILGGG--QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             EEEEEC--CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             EEEeec--CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            999984  45              7888884                     345567889999999999998743

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.9e-35  Score=273.71  Aligned_cols=301  Identities=13%  Similarity=0.117  Sum_probs=222.0

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc---ccceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES---YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~---~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      ..+..|...|++++|+|++.++++|+.|+.|++|++.++.   +....+.+|...|++++|+|..           ++++
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------d~~~   73 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE-----------YGRI   73 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG-----------GCSE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC-----------CCCE
Confidence            3455788889999999999999999999999999998642   4667788999999999999821           3799


Q ss_pred             EEEeeCCCceEEec--CC---------ceeeeccCCCCceEEEEeeecCCCC--CCEEEEeeCCCcEEEEeccCCCcccc
Q 010784          181 LVTSSCDHSIRLWW--KG---------SCQRCFKGHNGPVSTLSDKLLGDGS--GKILASGGEDATVRLWSLSSSGKRGQ  247 (501)
Q Consensus       181 l~s~~~dg~i~vwd--~~---------~~~~~~~~h~~~v~~l~~s~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~  247 (501)
                      |++|+.||+|++||  .+         +.+..+..|...|.+++|+    ++  +.+|++|+.||.|++||+.++.....
T Consensus        74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA----PAHLGLKLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC----CGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred             EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEc----CCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence            99999999999999  33         4577788999999999997    67  89999999999999999988764211


Q ss_pred             ccce-------eeccCCCCceeEEEEeec--CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784          248 QALK-------ATLYGHEKPIKLMSVAGH--KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM  318 (501)
Q Consensus       248 ~~~~-------~~~~~~~~~v~~l~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (501)
                      ....       .....|...+.+++|+|.  ++..+++++.|+.+.+|+...++.                         
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------  204 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-------------------------  204 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-------------------------
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce-------------------------
Confidence            1110       111268889999999984  488999999999998888766532                         


Q ss_pred             EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC----cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCccc
Q 010784          319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK----SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVG  393 (501)
Q Consensus       319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~  393 (501)
                                       ..+..+.+|...|.+++|+|++    ++|++|+.|+ |++||++.....      .....+..
T Consensus       205 -----------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~  261 (351)
T 3f3f_A          205 -----------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSP------LASEESLT  261 (351)
T ss_dssp             -----------------EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------
T ss_pred             -----------------eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCc------cccCCccc
Confidence                             1234566789999999999998    8999999998 999999986543      22222233


Q ss_pred             CeEEEEecCC-eEEEEe----cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          394 SVTQLHMDPY-KIVTGG----RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       394 ~v~~l~~~~~-~~l~~g----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      .+......+. ..++.+    .....+.+|+..+.+.+..+     .+|...|++++|+|++++|++++  .||.|++|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~  334 (351)
T 3f3f_A          262 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-----DDHNGEVWSVSWNLTGTILSSAG--DDGKVRLWK  334 (351)
T ss_dssp             -----------------------------CCSEEEEEEEEE-----CTTSSCEEEEEECSSSCCEEEEE--TTSCEEEEE
T ss_pred             ceeccCCCcccccccccccccccceeeeecccccccEEEEE-----ecccccEEEEEEcCCCCEEEEec--CCCcEEEEe
Confidence            3333333333 333322    24455677777777888888     56788999999999999999999  669999999


Q ss_pred             ccCCcc
Q 010784          469 FSNATC  474 (501)
Q Consensus       469 ~~~~~~  474 (501)
                      +..++.
T Consensus       335 ~~~~~~  340 (351)
T 3f3f_A          335 ATYSNE  340 (351)
T ss_dssp             ECTTSC
T ss_pred             cCcCcc
Confidence            998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.5e-35  Score=278.00  Aligned_cols=272  Identities=13%  Similarity=0.121  Sum_probs=214.2

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcC-cEEEEeeCCCceEEec--CCceeeecc--CCCCceEEEEeeec
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE-NVLVTSSCDHSIRLWW--KGSCQRCFK--GHNGPVSTLSDKLL  217 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~vwd--~~~~~~~~~--~h~~~v~~l~~s~~  217 (501)
                      ......+.+|.+.|++++|+|             ++ ++|++|+.||.|+|||  .+.....+.  +|...|.+++|+  
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~-------------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~--  127 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHP-------------THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFN--  127 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECS-------------SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEE--
T ss_pred             cceEEeccCCCCCEEEEEECC-------------CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeC--
Confidence            356677889999999999999             67 8999999999999999  445555444  699999999998  


Q ss_pred             CCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeec---cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcc
Q 010784          218 GDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATL---YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSA  293 (501)
Q Consensus       218 ~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~  293 (501)
                        + ++++|++|+.|+.|++||+.+..       ...+   ..|...|.+++|+| ++.+|++|+.|+.|++||++..  
T Consensus       128 --~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~--  195 (383)
T 3ei3_B          128 --QFNTNQLFVSSIRGATTLRDFSGSV-------IQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDGH--  195 (383)
T ss_dssp             --TTEEEEEEEEETTTEEEEEETTSCE-------EEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETTSC--
T ss_pred             --CCCCCEEEEEeCCCEEEEEECCCCc-------eEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECCCC--
Confidence              6 77999999999999999998632       3344   34558899999998 7889999999999999998422  


Q ss_pred             ccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc-EEEEEcCCc-EEEE
Q 010784          294 VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS-LICTGGIGK-AMTW  371 (501)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~d~-i~iw  371 (501)
                                                                 .+..+..|...|.+++|+|++. ++++++.|+ |++|
T Consensus       196 -------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  232 (383)
T 3ei3_B          196 -------------------------------------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLW  232 (383)
T ss_dssp             -------------------------------------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             -------------------------------------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEE
Confidence                                                       2345667899999999999998 999999888 9999


Q ss_pred             ecCCCCCCCCCCCcccccCcccCeEEEEecC-C-eEEEEecCCCcEEEEeCCCcccccccccCCC--CCCCcc-------
Q 010784          372 DIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYP--EEADIS-------  440 (501)
Q Consensus       372 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~-------  440 (501)
                      |+++.+..  ...+..+ +|...|++++|+| + .++++++.|+.|++||+.+++.+..+..+..  ..|...       
T Consensus       233 d~~~~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  309 (383)
T 3ei3_B          233 DLRNIKDK--NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP  309 (383)
T ss_dssp             EGGGCCST--TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECS
T ss_pred             eCCCCCcc--cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccC
Confidence            99985432  2233444 6899999999999 8 8888889999999999999988877754321  122233       


Q ss_pred             ---eeeeEeeccccEEEEeecCCCceEEEeeccC-----------------------CccceeecCCCCceeeecccC
Q 010784          441 ---TGCSAMAVSGCRIVTASYGEPGLLQFRDFSN-----------------------ATCPVLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       441 ---v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~-----------------------~~~~~~s~~~d~~~~~w~~~~  492 (501)
                         +..++|+|+|++  +++  .|+.|++||+..                       .+..+++++ |+.+++|+++.
T Consensus       310 ~~~~~~~~~s~dg~~--s~s--~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          310 MYDLIVAGRYPDDQL--LLN--DKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             SSSEEEEECBCCTTT--CTT--CCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCCceEEEecCCccc--ccC--CCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence               333566666666  555  679999999643                       334456675 89999998863

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-35  Score=280.60  Aligned_cols=290  Identities=7%  Similarity=-0.017  Sum_probs=226.5

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      ..-...|.+++|+|||.++|+++.|++|+  |..    ....+.+|...|.+++|+|             +|       .
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~----~~~~l~gh~~~v~~V~FsP-------------dg-------~   65 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPK----YAKDINCNSKNLFHVKEFP-------------LE-------F   65 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EEC----CCSCCSSBGGGTEEEEEEC-------------CC-------C
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--ccc----ccceecCCCccEEEEEECC-------------CC-------C
Confidence            33446699999999999999999999999  643    3355689999999999999             66       6


Q ss_pred             CCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC-----c
Q 010784          187 DHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK-----P  260 (501)
Q Consensus       187 dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~  260 (501)
                      ++.+.+|+ .+..+..+ .|...|.+++|+    |+|.+|++++.||.|++||...        ++..+. |..     .
T Consensus        66 ~~~~~~~~~~~~~~~~~-~~~~~V~~vawS----PdG~~LAs~s~dg~V~iwd~~~--------~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           66 ENKLDFELAQQNGLLNS-QPVCYPRVCKPS----PIDDWMAVLSNNGNVSVFKDNK--------MLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             CCTTTTSCCCSSCSSTT-SCSCCEEEEEEC----SSSSCEEEEETTSCEEEEETTE--------EEEECC-CSSCSTTTC
T ss_pred             cceEEEEeCCCceEeec-CCCCcEEEEEEC----CCCCEEEEEeCCCcEEEEeCCc--------eeeecc-CCCcccccc
Confidence            78888887 44444444 458899999998    8999999999999999999543        355566 665     5


Q ss_pred             eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEee
Q 010784          261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMT  340 (501)
Q Consensus       261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  340 (501)
                      |.+++|+| ++++|++|+.||+|++||+.++..... .                                    .-.+.+
T Consensus       132 v~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~-~------------------------------------~i~l~t  173 (588)
T 2j04_A          132 YHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTP-E------------------------------------FYFESS  173 (588)
T ss_dssp             EEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCC-C------------------------------------CEEEEE
T ss_pred             EEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccc-c------------------------------------ceeeee
Confidence            99999998 899999999999999999988642100 0                                    001223


Q ss_pred             e----ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCCeEEEEecCCCc
Q 010784          341 P----AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPYKIVTGGRDDLR  414 (501)
Q Consensus       341 ~----~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~l~~gs~dg~  414 (501)
                      +    .+|...|.+++|+|+|  +++++.|+ |++||+...+..   ....++ .+|...|.+++|+ +..+++++ +++
T Consensus       174 i~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~---~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~t  246 (588)
T 2j04_A          174 IRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ---PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGY  246 (588)
T ss_dssp             EECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC---CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSE
T ss_pred             eecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc---cceeeecccccCcEEEEEEE-CCEEEEEe-CCe
Confidence            3    5678899999999999  66666677 999999876531   122456 4788899999999 76666664 699


Q ss_pred             EEEEeCCCcccccccccCCCCCCCcceeeeEe--eccccEEEEeecCCCceEEEeec-----cCCccceeecCCCCceee
Q 010784          415 INIWETDTGMLANSLLCNYPEEADISTGCSAM--AVSGCRIVTASYGEPGLLQFRDF-----SNATCPVLKHEVQNDSKF  487 (501)
Q Consensus       415 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~s~~~d~~g~i~~w~~-----~~~~~~~~s~~~d~~~~~  487 (501)
                      |++||+.+++.....     .+|...+..++|  +|++..|++++  ++|. ++|.+     +++...+++  .|+.+++
T Consensus       247 IkLWd~~~~~~~~~~-----~gh~~~V~~va~~~s~d~~~La~a~--edG~-klw~~d~~~~spd~~l~a~--~d~~v~l  316 (588)
T 2j04_A          247 VHKIDLKNYSISSLK-----TGSLENFHIIPLNHEKESTILLMSN--KTSY-KVLLEDELHVTADNIIAPY--LEKKFKK  316 (588)
T ss_dssp             EEEEETTTTEEEEEE-----CSCCSCCCEEEETTCSSCEEEEECS--SCEE-EEEESSSEEEECCCSSHHH--HHHHHHH
T ss_pred             EEEEECCCCeEEEEE-----cCCCceEEEEEeeeCCCCCEEEEEc--CCCC-EEEeeccEEECCCceEEEE--cCCEEEE
Confidence            999999887763333     357889999999  99999999998  6799 99997     555554444  3999999


Q ss_pred             eccc
Q 010784          488 WGPQ  491 (501)
Q Consensus       488 w~~~  491 (501)
                      |+.+
T Consensus       317 W~~~  320 (588)
T 2j04_A          317 WSTI  320 (588)
T ss_dssp             TTTT
T ss_pred             EECC
Confidence            9875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=273.06  Aligned_cols=287  Identities=20%  Similarity=0.267  Sum_probs=230.0

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCc---CcEEEEeeCCCceEEec--C-Ccee-eeccCCCCceEEEEee
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT---ENVLVTSSCDHSIRLWW--K-GSCQ-RCFKGHNGPVSTLSDK  215 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~i~vwd--~-~~~~-~~~~~h~~~v~~l~~s  215 (501)
                      .+.+..+.+|.+.|++++|+|             +   |++|++|+.||.|++||  . +..+ ..+.+|...|.+++|+
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~-------------~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~   95 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSP-------------PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS   95 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECC-------------TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEEC
T ss_pred             cceeEeccCCCCceEEEEEcC-------------CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEEC
Confidence            467778899999999999999             5   69999999999999999  3 4444 6788999999999997


Q ss_pred             ecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE--eecCCeEEEEEeCCCeEEEEECCCCcc
Q 010784          216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV--AGHKSFLLVTISKDSKVRVWDTSTSSA  293 (501)
Q Consensus       216 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~l~s~s~dg~v~vwd~~~~~~  293 (501)
                          +++++|++|+.||.|++||+.++.       ...+..|...|.+++|  ++ ++.+|++++.||.|++||+++++.
T Consensus        96 ----~~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A           96 ----DDGSKVFTASCDKTAKMWDLSSNQ-------AIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             ----TTSSEEEEEETTSEEEEEETTTTE-------EEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSC
T ss_pred             ----cCCCEEEEEcCCCcEEEEEcCCCC-------ceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcE
Confidence                799999999999999999999875       2345679999999999  55 678999999999999999998865


Q ss_pred             ccceecccceecCCCceeeecCCCeEEEEeC-CcEEEEEcCCCceEeeec--cCCCcEEEEEEcCCCcE----EEEEcCC
Q 010784          294 VRSSCCVGMTSVPGVPVDMKCHESMLYIASG-SSVVTIDLRTMQKVMTPA--ICKPILHSFSIMPSKSL----ICTGGIG  366 (501)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~--~~~~~v~~v~~~~~~~~----l~~~~~d  366 (501)
                      +...      .......++.+.....+++.. +.+.+|+++.........  .+...+.++.+.++...    +++++.+
T Consensus       164 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  237 (368)
T 3mmy_A          164 MMVL------QLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE  237 (368)
T ss_dssp             SEEE------ECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred             EEEE------ecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence            4432      334456666666666666654 589999998876543322  23455566666555433    8899988


Q ss_pred             c-EEEEecCCCCCCCCCCCcccccCccc------------CeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccC
Q 010784          367 K-AMTWDIRRSQDAVKPQPMAELDGHVG------------SVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCN  432 (501)
Q Consensus       367 ~-i~iwd~~~~~~~~~~~~~~~~~~h~~------------~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~  432 (501)
                      + |++||++.....   ..+..+.+|..            .|++++|+|+ +++++|+.||.|++||+.+++++..+   
T Consensus       238 g~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~---  311 (368)
T 3mmy_A          238 GRVAIHYINPPNPA---KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS---  311 (368)
T ss_dssp             SEEEEEESSCSCHH---HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC---
T ss_pred             CcEEEEecCCCCcc---ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe---
Confidence            8 999999986321   23356677765            7999999999 88899999999999999999999988   


Q ss_pred             CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          433 YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       433 ~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                        ..|...|.+++|+|+|++|++++  .|+..+.|++-
T Consensus       312 --~~~~~~v~~~~~s~~g~~l~~~s--~d~~~~~~~~~  345 (368)
T 3mmy_A          312 --EQLDQPISACCFNHNGNIFAYAS--SYDWSKGHEFY  345 (368)
T ss_dssp             --CCCSSCEEEEEECTTSSCEEEEE--CCCSTTCGGGC
T ss_pred             --cCCCCCceEEEECCCCCeEEEEe--ccccccccccc
Confidence              56788999999999999999999  44655555543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5e-35  Score=275.75  Aligned_cols=281  Identities=13%  Similarity=0.112  Sum_probs=218.2

Q ss_pred             eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccC-----CCCceEEEEeeecCC
Q 010784          147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKG-----HNGPVSTLSDKLLGD  219 (501)
Q Consensus       147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~-----h~~~v~~l~~s~~~~  219 (501)
                      ....+|.+.|++++|+|...         .....+++++.++.|++||  .+..+..+..     |...|.+++|+|...
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~---------~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   82 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSK---------EGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN   82 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCC---------TTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT
T ss_pred             EeecCCCCceEEEEEecccC---------CCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC
Confidence            34568999999999998310         0145566666678999999  4555555543     668899999985444


Q ss_pred             CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784          220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                      .++.+|++|+.||.|++||+.+++      .+..+.+|...|.+++|+|.++.+|++++.||.|++||+++++.....  
T Consensus        83 ~~~~~l~~~~~dg~i~v~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--  154 (366)
T 3k26_A           83 TSHPLLAVAGSRGIIRIINPITMQ------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF--  154 (366)
T ss_dssp             TCCEEEEEEETTCEEEEECTTTCC------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE--
T ss_pred             CCCCEEEEecCCCEEEEEEchhce------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe--
Confidence            447899999999999999999876      477888999999999999867889999999999999999876432110  


Q ss_pred             ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784          300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD  378 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~  378 (501)
                                                             ..+..|...|.+++|+|++.+|++++.|+ |++||+++++.
T Consensus       155 ---------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  195 (366)
T 3k26_A          155 ---------------------------------------GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM  195 (366)
T ss_dssp             ---------------------------------------CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHH
T ss_pred             ---------------------------------------cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcc
Confidence                                                   11256889999999999999999999888 99999997643


Q ss_pred             CCC----------------------CCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCccc-----------
Q 010784          379 AVK----------------------PQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGML-----------  425 (501)
Q Consensus       379 ~~~----------------------~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~-----------  425 (501)
                      ...                      .........|...|.+++|+ ..++++++.||.|++||+.+++.           
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  274 (366)
T 3k26_A          196 MNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN  274 (366)
T ss_dssp             HHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred             ccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence            200                      00112233489999999999 44666778999999999988754           


Q ss_pred             ---ccccccCCCCCCCcceeeeEeecc--ccEEEEeecCCCceEEEeeccCC---------------------------c
Q 010784          426 ---ANSLLCNYPEEADISTGCSAMAVS--GCRIVTASYGEPGLLQFRDFSNA---------------------------T  473 (501)
Q Consensus       426 ---~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~s~~~d~~g~i~~w~~~~~---------------------------~  473 (501)
                         +..+     ..|...|.+++|+|+  +++|++|+  .||.|++||+..+                           +
T Consensus       275 ~~~~~~~-----~~~~~~v~~~~~s~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  347 (366)
T 3k26_A          275 VTILGRF-----DYSQCDIWYMRFSMDFWQKMLALGN--QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS  347 (366)
T ss_dssp             EEEEEEE-----ECSSCCSSCCCCEECTTSSEEEEEC--TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred             hheeccc-----cccCCcEEEEEEcCCCCCcEEEEEe--cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence               4444     456778999999999  99999999  6699999997643                           2


Q ss_pred             cceeecCCCCceeeeccc
Q 010784          474 CPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       474 ~~~~s~~~d~~~~~w~~~  491 (501)
                      ..+++++.|+.+++|+++
T Consensus       348 ~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          348 SILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SEEEEEETTSEEEEEEC-
T ss_pred             CeEEEEeCCCEEEEEEec
Confidence            346788999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.6e-35  Score=283.29  Aligned_cols=276  Identities=11%  Similarity=0.075  Sum_probs=217.8

Q ss_pred             cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784          154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED  231 (501)
Q Consensus       154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d  231 (501)
                      ..+++++|+|             ++++|++|+.||.|++||  .+.....+..| ..+....|+    +++++|++|+.|
T Consensus        57 ~~~~~~~~s~-------------~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~----~~~~~l~~~~~d  118 (420)
T 3vl1_A           57 DAGKGNTFEK-------------VGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAK----LQMRRFILGTTE  118 (420)
T ss_dssp             BCCTTCEEEE-------------EETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEEC----SSSCEEEEEETT
T ss_pred             ccccceeeee-------------cCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEe----cCCCEEEEEECC
Confidence            3456889999             899999999999999999  44555555555 333444554    889999999999


Q ss_pred             CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee
Q 010784          232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD  311 (501)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  311 (501)
                      |.|++||+.++.      ....+.+|...|.+++|+| ++.+|++|+.|+.|++||+++++.+....     .+...+.+
T Consensus       119 g~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~  186 (420)
T 3vl1_A          119 GDIKVLDSNFNL------QREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTD  186 (420)
T ss_dssp             SCEEEECTTSCE------EEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEE-----CCSSCEEE
T ss_pred             CCEEEEeCCCcc------eeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEc-----CCCCcEEE
Confidence            999999998765      4677789999999999998 78899999999999999999886544321     45667777


Q ss_pred             eecCCCeEEEE--e-CCcEEEEEcCCCceEeeecc---CCCcEEEE---------------------EEcCCCcEEEEEc
Q 010784          312 MKCHESMLYIA--S-GSSVVTIDLRTMQKVMTPAI---CKPILHSF---------------------SIMPSKSLICTGG  364 (501)
Q Consensus       312 ~~~~~~~~~~~--~-~~~i~~~d~~~~~~~~~~~~---~~~~v~~v---------------------~~~~~~~~l~~~~  364 (501)
                      +.++++...++  + ++.+++||+++++.+..+..   +...+.++                     +|+|++++|++|+
T Consensus       187 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (420)
T 3vl1_A          187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH  266 (420)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred             EEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence            77776543333  3 34899999999999888875   34445444                     4578999999999


Q ss_pred             CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecCCCcEEEEeCCCccc-ccccccCCCCCCCcc
Q 010784          365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRDDLRINIWETDTGML-ANSLLCNYPEEADIS  440 (501)
Q Consensus       365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~  440 (501)
                      .++ |++||+++++..     ......|...|++++|+|+ . ++++|+.||.|++||+++++. +..+..    .|...
T Consensus       267 ~dg~i~i~d~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~----~~~~~  337 (420)
T 3vl1_A          267 VSGVITVHNVFSKEQT-----IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI----NEGTP  337 (420)
T ss_dssp             TTSCEEEEETTTCCEE-----EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE----STTSC
T ss_pred             CCCeEEEEECCCCcee-----EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc----cCCCC
Confidence            998 999999987644     2233468889999999999 6 999999999999999998754 666642    25667


Q ss_pred             eeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          441 TGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       441 v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      +.++. .+++++|++++  .||.|++|++..
T Consensus       338 v~~~~-~~~~~~l~s~~--~d~~v~iw~~~~  365 (420)
T 3vl1_A          338 INNVY-FAAGALFVSSG--FDTSIKLDIISD  365 (420)
T ss_dssp             EEEEE-EETTEEEEEET--TTEEEEEEEECC
T ss_pred             ceEEE-eCCCCEEEEec--CCccEEEEeccC
Confidence            88874 56888999999  669999999765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-34  Score=262.74  Aligned_cols=268  Identities=17%  Similarity=0.228  Sum_probs=224.9

Q ss_pred             ccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeec
Q 010784          140 LSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLL  217 (501)
Q Consensus       140 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~  217 (501)
                      .++.+....+.+|.+.|++++| +             ++++|++|+.||.|++||  .+.....+..|...|.+++|+  
T Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~-~-------------~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~--   68 (313)
T 3odt_A            5 FTGYQLSATLKGHDQDVRDVVA-V-------------DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYD--   68 (313)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEE-E-------------ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEE--
T ss_pred             cccHHHHHHhhCCCCCcEEEEe-c-------------CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEEC--
Confidence            3445778899999999999999 7             789999999999999999  667778888999999999998  


Q ss_pred             CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784          218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  297 (501)
                        +++++|++|+.||.|++|++.....   ......+.+|...|.++.|.   ++++++++.||.|++||  .+      
T Consensus        69 --~~~~~l~~~~~dg~i~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~------  132 (313)
T 3odt_A           69 --SEKELLLFGGKDTMINGVPLFATSG---EDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EG------  132 (313)
T ss_dssp             --TTTTEEEEEETTSCEEEEETTCCTT---SCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TT------
T ss_pred             --CCCCEEEEecCCCeEEEEEeeecCC---CCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CC------
Confidence              8999999999999999999987542   12466778899999999994   45899999999999999  22      


Q ss_pred             ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCC
Q 010784          298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~  375 (501)
                                                            +....+..|...+.++.++| ++.++++++.++ |++||...
T Consensus       133 --------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  174 (313)
T 3odt_A          133 --------------------------------------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK  174 (313)
T ss_dssp             --------------------------------------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE
T ss_pred             --------------------------------------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc
Confidence                                                  12345566889999999988 899999999888 99999432


Q ss_pred             CCCCCCCCCcccccC-cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE
Q 010784          376 SQDAVKPQPMAELDG-HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI  453 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~-h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  453 (501)
                              ....+.. |...|.+++|+|+ . +++++.||.|++||+.+++.+..+     ..|...|.+++|+|++ .|
T Consensus       175 --------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~-~l  239 (313)
T 3odt_A          175 --------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY-----EGHESFVYCIKLLPNG-DI  239 (313)
T ss_dssp             --------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECTTS-CE
T ss_pred             --------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh-----hcCCceEEEEEEecCC-CE
Confidence                    2355666 8899999999999 7 777789999999999999999988     4678899999999999 58


Q ss_pred             EEeecCCCceEEEeeccCCc--------------------cceeecCCCCceeeecccCCC
Q 010784          454 VTASYGEPGLLQFRDFSNAT--------------------CPVLKHEVQNDSKFWGPQCYS  494 (501)
Q Consensus       454 ~s~~~d~~g~i~~w~~~~~~--------------------~~~~s~~~d~~~~~w~~~~~~  494 (501)
                      ++++  .||.|++||+..+.                    ..+++++.|+.+++|++....
T Consensus       240 ~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          240 VSCG--EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             EEEE--TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred             EEEe--cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence            8888  66999999965322                    126678999999999987654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.3e-35  Score=277.98  Aligned_cols=265  Identities=14%  Similarity=0.124  Sum_probs=208.9

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc------eeeeccCCCCceEEEEee
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS------CQRCFKGHNGPVSTLSDK  215 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~------~~~~~~~h~~~v~~l~~s  215 (501)
                      .....+.+|.+.|++++|+|               ++|++|+.||+|++||  .+.      .+..+.+|...|.+++|+
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~---------------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   71 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN---------------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL   71 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS---------------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC---------------CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEe
Confidence            44567889999999999986               7999999999999999  444      577888999999999998


Q ss_pred             ecCCCC----C---CEEEEeeCCCcEEEEeccCCCccccccceeeccCC-----CCceeEEEEe----ecCCeE-EEEEe
Q 010784          216 LLGDGS----G---KILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-----EKPIKLMSVA----GHKSFL-LVTIS  278 (501)
Q Consensus       216 ~~~~~~----~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~----~~~~~~-l~s~s  278 (501)
                          ++    +   ++|++|+.||.|++||+.++... .......+..|     ...|.+++|+    | ++.+ |++++
T Consensus        72 ----~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~  145 (397)
T 1sq9_A           72 ----QAIERDAFELCLVATTSFSGDLLFYRITREDET-KKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATD  145 (397)
T ss_dssp             ----EEEETTTEEEEEEEEEETTSCEEEEEEEECTTT-CCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEE
T ss_pred             ----cccccCCccccEEEEEcCCCCEEEEEccCCccc-ccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEe
Confidence                56    8   89999999999999999886520 00115677778     5899999999    8 6777 99999


Q ss_pred             CCCeEEEEECCC------CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEE
Q 010784          279 KDSKVRVWDTST------SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFS  352 (501)
Q Consensus       279 ~dg~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~  352 (501)
                      .||.|++||+++      ++.+..                  .+...+..              .+.....|...|.+++
T Consensus       146 ~dg~i~iwd~~~~~~~~~~~~~~~------------------~~~~~~~~--------------~~~~~~~~~~~i~~~~  193 (397)
T 1sq9_A          146 VKGTTYIWKFHPFADESNSLTLNW------------------SPTLELQG--------------TVESPMTPSQFATSVD  193 (397)
T ss_dssp             TTSCEEEEEEESSSSHHHHTTTCC------------------CCEEEEEE--------------EECCSSSSCCCCCEEE
T ss_pred             CCCcEEEEeCCccccccccceeec------------------cCcceeee--------------eeccccCCCCCceEEE
Confidence            999999999987      432210                  00000000              0011134788899999


Q ss_pred             EcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC---c---ccCeEEEEecCC-eEEEEecCC---CcEEEEeCC
Q 010784          353 IMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG---H---VGSVTQLHMDPY-KIVTGGRDD---LRINIWETD  421 (501)
Q Consensus       353 ~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~---h---~~~v~~l~~~~~-~~l~~gs~d---g~i~iwd~~  421 (501)
                      |+|++ ++++++.++ |++||+++++..      ..+..   |   ...|.+++|+|+ .++++++.|   |.|++||+.
T Consensus       194 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~  266 (397)
T 1sq9_A          194 ISERG-LIATGFNNGTVQISELSTLRPL------YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE  266 (397)
T ss_dssp             ECTTS-EEEEECTTSEEEEEETTTTEEE------EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             ECCCc-eEEEEeCCCcEEEEECCCCcee------EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            99999 999999988 999999986544      77777   8   999999999999 888888899   999999999


Q ss_pred             CcccccccccCCC--------CCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          422 TGMLANSLLCNYP--------EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       422 ~~~~~~~~~~~~~--------~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +++.+..+.....        ..|...|.+++|+|++++|++++  .||.|++||+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~  321 (397)
T 1sq9_A          267 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG--WDGKLRFWDVK  321 (397)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE--TTSEEEEEETT
T ss_pred             CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe--CCCeEEEEEcC
Confidence            9999888842000        00788999999999999999999  66999999964

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-34  Score=269.84  Aligned_cols=260  Identities=15%  Similarity=0.179  Sum_probs=216.5

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV  182 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (501)
                      ..+..|..+|++++|++++.++++|+.|+.|++|++..+ .+....+.+|.+.|++++|++..           ++++|+
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~~~l~   73 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------FGTILA   73 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-----------GCSEEE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-----------CCCEEE
Confidence            346778899999999999999999999999999999721 46778899999999999998721           389999


Q ss_pred             EeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCC--CCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          183 TSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGS--GKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       183 s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      +|+.||.|++||  .++  .+..+..|...|.+++|+    ++  +.+|++++.||.|++||+.....    .....+..
T Consensus        74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~  145 (379)
T 3jrp_A           74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA----PHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDA  145 (379)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC----CGGGCSEEEEEETTSEEEEEECCTTSC----CCEEEEEC
T ss_pred             EeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC----CCCCCCEEEEecCCCcEEEEecCCCCc----eeeEEecC
Confidence            999999999999  554  677788899999999997    66  89999999999999999988743    13446678


Q ss_pred             CCCceeEEEEeec------------CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784          257 HEKPIKLMSVAGH------------KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       257 ~~~~v~~l~~~~~------------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (501)
                      |...|.+++|+|.            ++.++++++.||.|++||++++....                             
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------------------------  196 (379)
T 3jrp_A          146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----------------------------  196 (379)
T ss_dssp             CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-----------------------------
T ss_pred             CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-----------------------------
Confidence            9999999999985            58899999999999999998764211                             


Q ss_pred             CcEEEEEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEe
Q 010784          325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM  400 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  400 (501)
                                 .....+.+|...|.+++|+|+   +.+|++++.|+ |++||++++.... ...+.....|...|++++|
T Consensus       197 -----------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~  264 (379)
T 3jrp_A          197 -----------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-KKTLLKEEKFPDVLWRASW  264 (379)
T ss_dssp             -----------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC-EEEESSSSCCSSCEEEEEE
T ss_pred             -----------eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccc-eeeeeccccCCCcEEEEEE
Confidence                       223456778999999999999   89999999988 9999999864220 0112333458889999999


Q ss_pred             cCC-eEEEEecCCCcEEEEeCCCc
Q 010784          401 DPY-KIVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       401 ~~~-~~l~~gs~dg~i~iwd~~~~  423 (501)
                      +|+ +++++++.||.|++|++..+
T Consensus       265 s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          265 SLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             CSSSCCEEEEESSSSEEEEEEEET
T ss_pred             cCCCCEEEEecCCCcEEEEeCCCC
Confidence            999 88888889999999998743

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.6e-33  Score=271.11  Aligned_cols=309  Identities=17%  Similarity=0.219  Sum_probs=239.2

Q ss_pred             hhccccCCeeeEEEe---cCCCCceEEeeCCc----------EEEeecCC----eeeEEEEecc----------------
Q 010784           94 LQFKFVDPLDVCFYS---VAKPHDHILLDNND----------IFSTQGSS----IQNIKIDNFL----------------  140 (501)
Q Consensus        94 ~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~----------~~~~~g~~----d~~i~vw~~~----------------  140 (501)
                      ..|+.+.+....+..   -..|..++.|-|+.          .+++.|+.    ...|.+.++.                
T Consensus        26 ~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~  105 (430)
T 2xyi_A           26 KIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNE  105 (430)
T ss_dssp             HHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------
T ss_pred             hhHhhCChHHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCcccccccccccc
Confidence            446665555543333   34457777777765          45666654    4567776543                


Q ss_pred             ----------cccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C----------Cce
Q 010784          141 ----------SESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K----------GSC  198 (501)
Q Consensus       141 ----------~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~----------~~~  198 (501)
                                ++........+|.+.|++++|+|+            ++++|++++.||.|++||  .          ...
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~------------~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~  173 (430)
T 2xyi_A          106 KGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQ------------NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQP  173 (430)
T ss_dssp             ------------CEEEEEEEEESSCCSEEEEETT------------EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCC
T ss_pred             ccccccccCCCCceEEEEEEcCCCcEEEEEECCC------------CCcEEEEECCCCcEEEEECCCcccccCccccCCC
Confidence                      111113445689999999999993            368999999999999998  3          456


Q ss_pred             eeeccCCCCceEEEEeeecCCCCCC-EEEEeeCCCcEEEEeccCCCcc-ccccceeeccCCCCceeEEEEeecCCeEEEE
Q 010784          199 QRCFKGHNGPVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLSSSGKR-GQQALKATLYGHEKPIKLMSVAGHKSFLLVT  276 (501)
Q Consensus       199 ~~~~~~h~~~v~~l~~s~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s  276 (501)
                      +..+.+|...|.+++|+    +++. +|++|+.||.|++||+..+... ........+.+|...|.+++|+|.++.+|++
T Consensus       174 ~~~~~~h~~~v~~l~~~----~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s  249 (430)
T 2xyi_A          174 DLRLRGHQKEGYGLSWN----PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS  249 (430)
T ss_dssp             SEEEECCSSCCCCEEEC----TTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEE
T ss_pred             cEEecCCCCCeEEEEeC----CCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEE
Confidence            77788999999999997    6777 9999999999999999874321 1112245667899999999999877889999


Q ss_pred             EeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC
Q 010784          277 ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS  356 (501)
Q Consensus       277 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~  356 (501)
                      ++.||.|++||++++..                                         .+.+..+..|...|++++|+|+
T Consensus       250 ~~~dg~i~i~d~~~~~~-----------------------------------------~~~~~~~~~~~~~v~~i~~~p~  288 (430)
T 2xyi_A          250 VADDQKLMIWDTRNNNT-----------------------------------------SKPSHTVDAHTAEVNCLSFNPY  288 (430)
T ss_dssp             EETTSEEEEEETTCSCS-----------------------------------------SSCSEEEECCSSCEEEEEECSS
T ss_pred             EeCCCeEEEEECCCCCC-----------------------------------------CcceeEeecCCCCeEEEEeCCC
Confidence            99999999999997631                                         0122345568899999999998


Q ss_pred             Cc-EEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc---------
Q 010784          357 KS-LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG---------  423 (501)
Q Consensus       357 ~~-~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~---------  423 (501)
                      +. ++++|+.++ |++||+++..     .++..+..|...|++++|+|+  .++++++.||.|++||+...         
T Consensus       289 ~~~~l~tg~~dg~v~vwd~~~~~-----~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  363 (430)
T 2xyi_A          289 SEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA  363 (430)
T ss_dssp             CTTEEEEEETTSEEEEEETTCTT-----SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCC-----CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence            86 788999888 9999999853     235888899999999999998  57888889999999999872         


Q ss_pred             -----ccccccccCCCCCCCcceeeeEeecccc-EEEEeecCCCceEEEeeccC
Q 010784          424 -----MLANSLLCNYPEEADISTGCSAMAVSGC-RIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       424 -----~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~  471 (501)
                           +++..+     .+|...|..++|+|+++ +|++++  .||.|++|++..
T Consensus       364 ~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~l~s~s--~dg~i~iw~~~~  410 (430)
T 2xyi_A          364 EDGPPELLFIH-----GGHTAKISDFSWNPNEPWIICSVS--EDNIMQVWQMAE  410 (430)
T ss_dssp             HHCCTTEEEEC-----CCCSSCEEEEEECSSSTTEEEEEE--TTSEEEEEEECH
T ss_pred             ccCCcceEEEc-----CCCCCCceEEEECCCCCCEEEEEE--CCCCEEEeEccc
Confidence                 334444     56788999999999999 888998  669999999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=269.97  Aligned_cols=275  Identities=13%  Similarity=0.135  Sum_probs=217.1

Q ss_pred             cceecccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEeeC---CCceEEec--CCceeee-ccCCCCceEEEEeeec
Q 010784          145 YRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTSSC---DHSIRLWW--KGSCQRC-FKGHNGPVSTLSDKLL  217 (501)
Q Consensus       145 ~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~---dg~i~vwd--~~~~~~~-~~~h~~~v~~l~~s~~  217 (501)
                      ....+.+|.+.|++++|+|             ++. ++++|+.   ||.|++||  .++.... ..+|...|.+++|+  
T Consensus        10 ~~~~~~~h~~~v~~~~~~p-------------~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~--   74 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVP-------------CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFG--   74 (357)
T ss_dssp             EEEEEEECSSCEEEEEECT-------------TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECT--
T ss_pred             hhhhccCCCCceEEEEEcC-------------CCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEc--
Confidence            3455678999999999999             664 5566766   99999999  4444333 33799999999997  


Q ss_pred             CCCC---CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee-----cCCeEEEEEeCCCeEEEEECC
Q 010784          218 GDGS---GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG-----HKSFLLVTISKDSKVRVWDTS  289 (501)
Q Consensus       218 ~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~~~~l~s~s~dg~v~vwd~~  289 (501)
                        ++   +.+|++|+.||.|++||+.++..     ....+.+|...|.++.|.+     .++.+|++++.||.|++||++
T Consensus        75 --~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~  147 (357)
T 3i2n_A           75 --ATSLQQRYLATGDFGGNLHIWNLEAPEM-----PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR  147 (357)
T ss_dssp             --TCCTTTCCEEEEETTSCEEEECTTSCSS-----CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT
T ss_pred             --CCCCCCceEEEecCCCeEEEEeCCCCCc-----cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC
Confidence              55   79999999999999999998763     4778889999999997643     267899999999999999998


Q ss_pred             CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC----CCcEEEEE----EcCCCcEEE
Q 010784          290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC----KPILHSFS----IMPSKSLIC  361 (501)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~v~~v~----~~~~~~~l~  361 (501)
                      +++..                                           +..+..|    ...+.+++    |+|++.+++
T Consensus       148 ~~~~~-------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~  184 (357)
T 3i2n_A          148 QKDDP-------------------------------------------VANMEPVQGENKRDCWTVAFGNAYNQEERVVC  184 (357)
T ss_dssp             SCSSC-------------------------------------------SEEECCCTTSCCCCEEEEEEECCCC-CCCEEE
T ss_pred             CCCCc-------------------------------------------ceeccccCCCCCCceEEEEEEeccCCCCCEEE
Confidence            87411                                           1112222    34788887    788999999


Q ss_pred             EEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC---C-eEEEEecCCCcEEEEeCCCcccccccccCCCCC
Q 010784          362 TGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP---Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEE  436 (501)
Q Consensus       362 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~  436 (501)
                      +++.++ |++||+++++.       .....|...|.+++|+|   + .++++|+.||.|++||+++++.+..+......+
T Consensus       185 ~~~~d~~i~i~d~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  257 (357)
T 3i2n_A          185 AGYDNGDIKLFDLRNMAL-------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA  257 (357)
T ss_dssp             EEETTSEEEEEETTTTEE-------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred             EEccCCeEEEEECccCce-------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence            999988 99999998754       33456788999999999   7 888888899999999999988877763211126


Q ss_pred             CCcceeeeEeecccc-EEEEeecCCCceEEEeeccC----------------------------------------Cccc
Q 010784          437 ADISTGCSAMAVSGC-RIVTASYGEPGLLQFRDFSN----------------------------------------ATCP  475 (501)
Q Consensus       437 ~~~~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~----------------------------------------~~~~  475 (501)
                      |...|.+++|+|+++ +|++++  .||.|++||+..                                        .+..
T Consensus       258 ~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  335 (357)
T 3i2n_A          258 HKSTVWQVRHLPQNRELFLTAG--GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG  335 (357)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEE--TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT
T ss_pred             CcCCEEEEEECCCCCcEEEEEe--CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe
Confidence            788999999999998 899998  669999999763                                        2334


Q ss_pred             ee-ecCCCCceeeecccCC
Q 010784          476 VL-KHEVQNDSKFWGPQCY  493 (501)
Q Consensus       476 ~~-s~~~d~~~~~w~~~~~  493 (501)
                      ++ +++.|+.+++|++...
T Consensus       336 l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          336 LCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEEEETTSEEEEEEECC-
T ss_pred             EEEEecCCCcEEEEECCCc
Confidence            55 7999999999998754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=282.35  Aligned_cols=328  Identities=8%  Similarity=-0.028  Sum_probs=220.6

Q ss_pred             CCcceeEEEeeccCcC-------cccccC--------CCCcCcEEEEeeCCCceEEec--CCcee----eeccCCCCceE
Q 010784          152 HKARITCMRLFPLHET-------SLFRSE--------PQRTENVLVTSSCDHSIRLWW--KGSCQ----RCFKGHNGPVS  210 (501)
Q Consensus       152 h~~~V~~~~~~~~~~~-------~~~~~~--------~~~~~~~l~s~~~dg~i~vwd--~~~~~----~~~~~h~~~v~  210 (501)
                      +.+.|.+|+|+|++..       ..+++.        .+|+++.|++++.|++|+|||  .++..    ..+.+|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            6788999999997511       233221        245677888899999999999  44332    34667889999


Q ss_pred             EEEeeecC--CCCCCEEEEeeCCCcEEEEeccCCCccc-----cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeE
Q 010784          211 TLSDKLLG--DGSGKILASGGEDATVRLWSLSSSGKRG-----QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV  283 (501)
Q Consensus       211 ~l~~s~~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v  283 (501)
                      +++|+|..  ++++.+|++|+.||+|++||+..+....     ...+...+.+|...|++++|++ + ..|++|+.||+|
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV  289 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFV  289 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEE
Confidence            99998421  1236799999999999999998764210     1112346788999999999986 3 489999999999


Q ss_pred             EEEECCCCccccceecccceecCCCceee--ecCCCe-EEEEe---CCcEEEEEcCCCceEeeeccCCC--cEEEEEEcC
Q 010784          284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDM--KCHESM-LYIAS---GSSVVTIDLRTMQKVMTPAICKP--ILHSFSIMP  355 (501)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~---~~~i~~~d~~~~~~~~~~~~~~~--~v~~v~~~~  355 (501)
                      ++||++++.....    ....+...+.++  .+.++. .++++   ++.+++||+++++.+..+.+|..  .|.+++|+|
T Consensus       290 ~lWD~~~~~~~~~----~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp  365 (524)
T 2j04_B          290 AEFDLTDPEVPSF----YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP  365 (524)
T ss_dssp             EEEETTBCSSCSE----EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred             EEEECCCCCCceE----EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence            9999987632111    112345666776  455543 33332   34899999999888777777653  588999999


Q ss_pred             CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCC
Q 010784          356 SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNY  433 (501)
Q Consensus       356 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~  433 (501)
                      +++.+++++.|+ |++||++++...      .++.+|.+.|++++|+|+ +++++|+.||+|++||+..+ .+..+....
T Consensus       366 ~~~~l~s~~~d~tv~lwd~~~~~~~------~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~  438 (524)
T 2j04_B          366 QIYSYIYSDGASSLRAVPSRAAFAV------HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSS  438 (524)
T ss_dssp             TTTEEEEECSSSEEEEEETTCTTCC------EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC----
T ss_pred             CcCeEEEeCCCCcEEEEECcccccc------eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCc
Confidence            999999999888 999999987654      778899999999999999 88999999999999998653 333221100


Q ss_pred             CCCCCcceeeeEeeccccEEEEeec-----------------CCCceEEEeeccCCc---cceeecCCCCceeeecccC
Q 010784          434 PEEADISTGCSAMAVSGCRIVTASY-----------------GEPGLLQFRDFSNAT---CPVLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       434 ~~~~~~~v~~~~~s~~g~~l~s~~~-----------------d~~g~i~~w~~~~~~---~~~~s~~~d~~~~~w~~~~  492 (501)
                      ...+...+..++|+|+|+.+.....                 .+.+.|.--.+++.+   ..+++|+.+|.+|+|+++-
T Consensus       439 ~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          439 ATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             --CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             cceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            0112235778999999985532110                 011112212244443   3688999999999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-33  Score=266.87  Aligned_cols=249  Identities=16%  Similarity=0.224  Sum_probs=210.5

Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccC-CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKG-HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~-h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      ++.+++++.||.|++||  ++.....+.. |...|.+++|+    +++++|++|+.||.|++||+.++.      .+..+
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~  172 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWS----HDGSFLSVGLGNGLVDIYDVESQT------KLRTM  172 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEEC----TTSSEEEEEETTSCEEEEETTTCC------EEEEE
T ss_pred             CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEEC----CCCCEEEEECCCCeEEEEECcCCe------EEEEe
Confidence            35688889999999999  6666666554 89999999997    799999999999999999999876      47788


Q ss_pred             cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                      .+|...|.+++|.   +.++++|+.||.|++||++...                                          
T Consensus       173 ~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~------------------------------------------  207 (401)
T 4aez_A          173 AGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIAN------------------------------------------  207 (401)
T ss_dssp             CCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSS------------------------------------------
T ss_pred             cCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCc------------------------------------------
Confidence            8999999999995   3599999999999999998542                                          


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEec-
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGR-  410 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs-  410 (501)
                       ..+..+.+|.+.|.+++|+|++.+|++|+.|+ |++||+++++..      ..+..|...|.+++|+|+  .++++|+ 
T Consensus       208 -~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~------~~~~~~~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          208 -HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK------FTKTNHNAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE------EEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred             -ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc------EEecCCcceEEEEEECCCCCCEEEEecC
Confidence             22345667899999999999999999999988 999999986544      778889999999999996  7888765 


Q ss_pred             -CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc-------------------
Q 010784          411 -DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS-------------------  470 (501)
Q Consensus       411 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~-------------------  470 (501)
                       .|+.|++||+.+++.+..+.      +...+.+++|+|++++|++++...+|.|++|++.                   
T Consensus       281 s~d~~i~i~d~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~  354 (401)
T 4aez_A          281 TMDKQIHFWNAATGARVNTVD------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY  354 (401)
T ss_dssp             TTTCEEEEEETTTCCEEEEEE------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCE
T ss_pred             CCCCEEEEEECCCCCEEEEEe------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEE
Confidence             79999999999999988883      3567999999999999999543267999999954                   


Q ss_pred             ----CCccceeecCCCCceeeecccCCC
Q 010784          471 ----NATCPVLKHEVQNDSKFWGPQCYS  494 (501)
Q Consensus       471 ----~~~~~~~s~~~d~~~~~w~~~~~~  494 (501)
                          +++..+++++.|+.+++|++....
T Consensus       355 ~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          355 SALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence                344567889999999999997654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.5e-33  Score=266.68  Aligned_cols=248  Identities=19%  Similarity=0.265  Sum_probs=209.2

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      +...|++|+|+|+|.++|+|+.|+.|++||+.++ +.+..+.+|...|.++.++               +.+|++|+.|+
T Consensus       146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-~~~~~~~~h~~~v~~~s~~---------------~~~l~sgs~d~  209 (420)
T 4gga_A          146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSARVGSLSWN---------------SYILSSGSRSG  209 (420)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEE---------------TTEEEEEETTS
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-cEEEEEeCCCCceEEEeeC---------------CCEEEEEeCCC
Confidence            4556999999999999999999999999999985 8889999999999999885               48999999999


Q ss_pred             ceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784          189 SIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS  265 (501)
Q Consensus       189 ~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  265 (501)
                      .+++||   ....+..+.+|...+..+.|+    +++.++++++.|+.+++|+..++..  ....+.....|...|.+++
T Consensus       210 ~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~----~~g~~l~s~~~D~~v~i~~~~~~~~--~~~~~~~~~~~~~~V~~~~  283 (420)
T 4gga_A          210 HIHHHDVRVAEHHVATLSGHSQEVCGLRWA----PDGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVA  283 (420)
T ss_dssp             EEEEEETTSSSCEEEEEECCSSCEEEEEEC----TTSSEEEEEETTSCEEEEESSCCSS--CSCCSEEECCCSSCEEEEE
T ss_pred             ceeEeeecccceeeEEecccccceeeeeec----CCCCeeeeeeccccceEEeeccccc--cceeeeeecccCCceeeee
Confidence            999998   455667888999999999997    8999999999999999999987653  1123556778999999999


Q ss_pred             EeecCCeEEEEE--eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784          266 VAGHKSFLLVTI--SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       266 ~~~~~~~~l~s~--s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  343 (501)
                      |+|.+..+++++  +.|+.|++||+.+++..                                            ..+. 
T Consensus       284 ~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~--------------------------------------------~~~~-  318 (420)
T 4gga_A          284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACL--------------------------------------------SAVD-  318 (420)
T ss_dssp             ECTTCTTEEEEEECTTTCEEEEEETTTTEEE--------------------------------------------EEEE-
T ss_pred             eCCCcccEEEEEeecCCCEEEEEeCCccccc--------------------------------------------eeec-
Confidence            999777787765  47999999999887432                                            2222 


Q ss_pred             CCCcEEEEEEcCCCcEEEEEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEe
Q 010784          344 CKPILHSFSIMPSKSLICTGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWE  419 (501)
Q Consensus       344 ~~~~v~~v~~~~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd  419 (501)
                      +...+.++.|+|++..+++++  .|+ |++||+.+++.+      .++.+|.+.|++++|+|+ .+|++|+.|++|+|||
T Consensus       319 ~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v------~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          319 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV------AELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE------EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            346688999999988887764  667 999999987654      899999999999999999 8899999999999999


Q ss_pred             CCCccccccc
Q 010784          420 TDTGMLANSL  429 (501)
Q Consensus       420 ~~~~~~~~~~  429 (501)
                      +....+....
T Consensus       393 v~~~~~~~~~  402 (420)
T 4gga_A          393 CFELDPARRR  402 (420)
T ss_dssp             CSCSSCC---
T ss_pred             CCCCCccchh
Confidence            9877666555

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-33  Score=289.72  Aligned_cols=258  Identities=15%  Similarity=0.179  Sum_probs=214.7

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      .+..|..+|++++|+|++.++++|+.||.|++|++.++ .+....+.+|.+.|++++|+|+.           ++++|++
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-----------~~~~l~s   72 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------FGTILAS   72 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-----------SCSEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-----------CCCEEEE
Confidence            45678889999999999999999999999999999732 46778899999999999999821           3899999


Q ss_pred             eeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCC--CCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          184 SSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGS--GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      |+.||+|++||  .+.  .+..+.+|...|.+++|+    ++  ++++++|+.||.|++||+.++..    .....+.+|
T Consensus        73 ~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~s----p~~~~~~l~sgs~dg~I~vwdl~~~~~----~~~~~~~~~  144 (753)
T 3jro_A           73 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA----PHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAH  144 (753)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC----CGGGCSEEEEEETTSEEEEEECCSSSC----CCCEEEECC
T ss_pred             EeCCCeEEEEECCCCcccccccccCCCCCeEEEEEC----CCCCCCEEEEEeCCCcEEEEEeecCCC----cceeEeecC
Confidence            99999999999  544  677788999999999997    66  89999999999999999988742    134566789


Q ss_pred             CCceeEEEEeec------------CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC
Q 010784          258 EKPIKLMSVAGH------------KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS  325 (501)
Q Consensus       258 ~~~v~~l~~~~~------------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (501)
                      ...|.+++|+|.            ++..+++|+.||.|++||++++...                               
T Consensus       145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-------------------------------  193 (753)
T 3jro_A          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------------------------------  193 (753)
T ss_dssp             SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-------------------------------
T ss_pred             CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-------------------------------
Confidence            999999999984            4789999999999999999876321                               


Q ss_pred             cEEEEEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec
Q 010784          326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD  401 (501)
Q Consensus       326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  401 (501)
                               ......+.+|...|.+++|+|+   +.++++|+.|+ |++||+++++... ...+.....|...|++++|+
T Consensus       194 ---------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~v~~l~~s  263 (753)
T 3jro_A          194 ---------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-KKTLLKEEKFPDVLWRASWS  263 (753)
T ss_dssp             ---------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC-BCCBSSSSCCSSCCCCEEEC
T ss_pred             ---------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc-eeEEeccCCCCCceEEEEEc
Confidence                     1233466789999999999999   99999999998 9999999864220 11234455688999999999


Q ss_pred             CC-eEEEEecCCCcEEEEeCCC
Q 010784          402 PY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       402 ~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      |+ .++++|+.||.|++|++.+
T Consensus       264 pdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          264 LSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             TTTCCEEEECSSSCEECCBCCS
T ss_pred             CCCCEEEEEcCCCEEEEEecCC
Confidence            99 8888889999999999984

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.4e-32  Score=265.12  Aligned_cols=256  Identities=20%  Similarity=0.418  Sum_probs=215.6

Q ss_pred             ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEE
Q 010784          150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILAS  227 (501)
Q Consensus       150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~s  227 (501)
                      .+|...|+++++               ++++|++|+.||+|++||  +++.+..+.+|.+.|.+++|      ++++|++
T Consensus       130 ~~~~~~v~~~~~---------------d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~------~~~~l~s  188 (435)
T 1p22_A          130 SETSKGVYCLQY---------------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY------DERVIIT  188 (435)
T ss_dssp             CSSCCCEEEEEC---------------CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC------CSSEEEE
T ss_pred             cCCCCcEEEEEE---------------CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE------CCCEEEE
Confidence            456778998887               578999999999999999  77888999999999999997      5789999


Q ss_pred             eeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCC
Q 010784          228 GGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG  307 (501)
Q Consensus       228 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  307 (501)
                      |+.||.|++||+.+++      .+..+.+|...|.++++++   ..+++|+.||.|++||+++++..             
T Consensus       189 g~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~-------------  246 (435)
T 1p22_A          189 GSSDSTVRVWDVNTGE------MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI-------------  246 (435)
T ss_dssp             EETTSCEEEEESSSCC------EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC-------------
T ss_pred             EcCCCeEEEEECCCCc------EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc-------------
Confidence            9999999999999886      4788889999999999963   48999999999999999876431             


Q ss_pred             CceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcc
Q 010784          308 VPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMA  386 (501)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~  386 (501)
                                                  .....+.+|...|.++++  +++++++|+.|+ |++||+++++..      .
T Consensus       247 ----------------------------~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~------~  290 (435)
T 1p22_A          247 ----------------------------TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFV------R  290 (435)
T ss_dssp             ----------------------------EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE------E
T ss_pred             ----------------------------eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEE------E
Confidence                                        112345678899999999  788999999888 999999987654      8


Q ss_pred             cccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784          387 ELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQF  466 (501)
Q Consensus       387 ~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~  466 (501)
                      .+.+|...|.++.+++ .++++|+.||.|++||+.+++++.++     .+|...|.+++|  ++++|++|+  .||.|++
T Consensus       291 ~~~~~~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~--~~~~l~sg~--~dg~i~v  360 (435)
T 1p22_A          291 TLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRCIRF--DNKRIVSGA--YDGKIKV  360 (435)
T ss_dssp             EEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEC--CSSEEEEEE--TTSCEEE
T ss_pred             EEcCCCCcEEEEEeCC-CEEEEEeCCCeEEEEECCCCCEEEEE-----eCCcCcEEEEEe--cCCEEEEEe--CCCcEEE
Confidence            8889999999999965 46666679999999999999999999     567888999998  889999999  6699999


Q ss_pred             eeccCC----------------------------ccceeecCCCCceeeecccCCC
Q 010784          467 RDFSNA----------------------------TCPVLKHEVQNDSKFWGPQCYS  494 (501)
Q Consensus       467 w~~~~~----------------------------~~~~~s~~~d~~~~~w~~~~~~  494 (501)
                      ||+..+                            +..+++++.||.+++|++....
T Consensus       361 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred             EECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence            997432                            2347799999999999997654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-33  Score=288.73  Aligned_cols=262  Identities=19%  Similarity=0.175  Sum_probs=213.7

Q ss_pred             ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      ...+.+|.+.|++++|+|             ++++|++|+.||+|+|||    .+..+..+.+|.++|++++|+    ++
T Consensus         2 ~~~l~gH~~~V~~l~~s~-------------dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s----~~   64 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDY-------------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA----HP   64 (753)
T ss_dssp             ------CCCCEEEECCCS-------------SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEEC----CT
T ss_pred             eeecccCcceeEEEEECC-------------CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEec----CC
Confidence            356789999999999999             889999999999999998    345677889999999999997    45


Q ss_pred             --CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCcccccee
Q 010784          222 --GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSC  298 (501)
Q Consensus       222 --~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~  298 (501)
                        +++|++|+.||.|++||+.++..    .....+.+|...|.+++|+|.. +..+++|+.||.|++||++++....   
T Consensus        65 ~~~~~l~s~s~Dg~I~vwd~~~~~~----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~---  137 (753)
T 3jro_A           65 KFGTILASCSYDGKVLIWKEENGRW----SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS---  137 (753)
T ss_dssp             TSCSEEEEEETTSCEEEEEEETTEE----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC---
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcc----cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc---
Confidence              89999999999999999998641    2466778899999999999842 7899999999999999998763211   


Q ss_pred             cccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-------------CCcEEEEEcC
Q 010784          299 CVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-------------SKSLICTGGI  365 (501)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-------------~~~~l~~~~~  365 (501)
                                                             ...+.+|...|.+++|+|             ++.++++|+.
T Consensus       138 ---------------------------------------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~  178 (753)
T 3jro_A          138 ---------------------------------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA  178 (753)
T ss_dssp             ---------------------------------------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET
T ss_pred             ---------------------------------------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC
Confidence                                                   123456889999999999             5899999998


Q ss_pred             Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC----eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784          366 GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY----KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIS  440 (501)
Q Consensus       366 d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  440 (501)
                      |+ |++||++++...  ..+...+.+|...|++++|+|+    .++++|+.||.|++||+.+++............|...
T Consensus       179 dg~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  256 (753)
T 3jro_A          179 DNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV  256 (753)
T ss_dssp             TSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC
T ss_pred             CCeEEEEeccCCccc--ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc
Confidence            88 999999987543  2445678899999999999997    7888889999999999998753222222222457889


Q ss_pred             eeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          441 TGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       441 v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      |.+++|+|+|++|++|+  .||.|++|++..+..
T Consensus       257 v~~l~~spdg~~l~s~s--~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          257 LWRASWSLSGNVLALSG--GDNKVTLWKENLEGK  288 (753)
T ss_dssp             CCCEEECTTTCCEEEEC--SSSCEECCBCCSSSC
T ss_pred             eEEEEEcCCCCEEEEEc--CCCEEEEEecCCCCC
Confidence            99999999999999999  669999999986543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=263.81  Aligned_cols=295  Identities=14%  Similarity=0.168  Sum_probs=224.9

Q ss_pred             eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeec------
Q 010784          131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCF------  202 (501)
Q Consensus       131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~------  202 (501)
                      ++.+++|++..+ +....+.+|.+.|++++|+|.            ++++|++|+.||.|++||  .+.....+      
T Consensus        22 ~~~~~v~~~~~~-~~~~~~~~h~~~v~~~~~s~~------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~   88 (408)
T 4a11_B           22 ESTRRVLGLELN-KDRDVERIHGGGINTLDIEPV------------EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC   88 (408)
T ss_dssp             HHHHHHHTEEEC-TTEEECCCCSSCEEEEEECTT------------TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE
T ss_pred             cCcceeeccccC-cceeeeeccCCcEEEEEEecC------------CCCEEEEEcCCCeEEEEECCCCcccceEeccccc
Confidence            456778888774 777888999999999999983            579999999999999999  33333332      


Q ss_pred             -------cCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec--CCe
Q 010784          203 -------KGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH--KSF  272 (501)
Q Consensus       203 -------~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~  272 (501)
                             .+|...|.+++|+    + ++.+|++++.||.|++||+.++..      ...+. +...+.++.+.+.  ++.
T Consensus        89 ~~~~~~~~~~~~~v~~~~~~----~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~  157 (408)
T 4a11_B           89 SIGRDHPDVHRYSVETVQWY----PHDTGMFTSSSFDKTLKVWDTNTLQT------ADVFN-FEETVYSHHMSPVSTKHC  157 (408)
T ss_dssp             EECTTCTTCCSSCEEEEEEC----TTCTTCEEEEETTSEEEEEETTTTEE------EEEEE-CSSCEEEEEECSSCSSCC
T ss_pred             cccccccccCCCcEEEEEEc----cCCCcEEEEEeCCCeEEEeeCCCCcc------ceecc-CCCceeeeEeecCCCCCc
Confidence                   2599999999997    5 778999999999999999998763      44444 7788999999874  344


Q ss_pred             EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEE
Q 010784          273 LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFS  352 (501)
Q Consensus       273 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~  352 (501)
                      ++++++.||.|++||+++++.                                            +..+..|...|.+++
T Consensus       158 ~~~~~~~~~~v~~~d~~~~~~--------------------------------------------~~~~~~~~~~v~~~~  193 (408)
T 4a11_B          158 LVAVGTRGPKVQLCDLKSGSC--------------------------------------------SHILQGHRQEILAVS  193 (408)
T ss_dssp             EEEEEESSSSEEEEESSSSCC--------------------------------------------CEEECCCCSCEEEEE
T ss_pred             EEEEEcCCCeEEEEeCCCcce--------------------------------------------eeeecCCCCcEEEEE
Confidence            999999999999999987643                                            234566889999999


Q ss_pred             EcCCCc-EEEEEcCCc-EEEEecCCCCCCC----------CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEe
Q 010784          353 IMPSKS-LICTGGIGK-AMTWDIRRSQDAV----------KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWE  419 (501)
Q Consensus       353 ~~~~~~-~l~~~~~d~-i~iwd~~~~~~~~----------~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd  419 (501)
                      |+|++. ++++++.|+ |++||+++.....          ..........|...|++++|+|+ .++++++.||.|++||
T Consensus       194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  273 (408)
T 4a11_B          194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN  273 (408)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence            999988 688999888 9999998765220          01122334678999999999999 8888889999999999


Q ss_pred             CCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc---------------------CCccceee
Q 010784          420 TDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS---------------------NATCPVLK  478 (501)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~---------------------~~~~~~~s  478 (501)
                      +.+++....+..+........+........+..+++++  .++.|++||+.                     +.+..+++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  351 (408)
T 4a11_B          274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP--YGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS  351 (408)
T ss_dssp             TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE--ETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             CCCCccceeccccccccccccceeEEecCCCceEEEEe--cCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence            99988776664333222222333333334455566666  45899999854                     34456789


Q ss_pred             cCCCCceeeecccCCCC
Q 010784          479 HEVQNDSKFWGPQCYSD  495 (501)
Q Consensus       479 ~~~d~~~~~w~~~~~~~  495 (501)
                      ++.||.+++|++.....
T Consensus       352 ~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          352 GSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             EETTSCEEEEEECC---
T ss_pred             ECCCCeEEEEeCCCCCc
Confidence            99999999999987643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.4e-33  Score=265.29  Aligned_cols=306  Identities=12%  Similarity=0.069  Sum_probs=196.4

Q ss_pred             EEEeecCCeeeEEEEecccccc--------cceecccCCcceeEEEeeccCc-------CcccccCCCCcCcEEEEeeCC
Q 010784          123 IFSTQGSSIQNIKIDNFLSESY--------YRATLSDHKARITCMRLFPLHE-------TSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       123 ~~~~~g~~d~~i~vw~~~~~~~--------~~~~~~~h~~~V~~~~~~~~~~-------~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      .+++.| .++.|.+|+......        .....-.|...+..+.|++...       .......+++++.+|++|+.|
T Consensus        32 ~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d  110 (393)
T 4gq1_A           32 NLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQD  110 (393)
T ss_dssp             TEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETT
T ss_pred             CEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCC
Confidence            345555 467788887643110        0011123555677777765321       112223345578899999999


Q ss_pred             CceEEec--CCc-----eeeeccCCCCceEEEEeeecC----CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          188 HSIRLWW--KGS-----CQRCFKGHNGPVSTLSDKLLG----DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       188 g~i~vwd--~~~-----~~~~~~~h~~~v~~l~~s~~~----~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      ++|+|||  .+.     .+..+.+|.+.|++++|+|..    ..++++|++|+.|++|++||+.++.      ....+..
T Consensus       111 ~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~------~~~~~~~  184 (393)
T 4gq1_A          111 NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG------PILAGYP  184 (393)
T ss_dssp             SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE------EEEEEEE
T ss_pred             CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc------eeeeecC
Confidence            9999999  433     234578999999999998532    1378899999999999999998766      3666778


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      |..+|.+++|+|.+..+|++|+.|+.|++||+++++.......... ........                  .+.....
T Consensus       185 ~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~-~~~~~~~s------------------~~~~~~~  245 (393)
T 4gq1_A          185 LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL-VKNPWLLT------------------LNTLPLV  245 (393)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCCCSEE------------------EESGGGC
T ss_pred             CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC-cccceEEe------------------cccccce
Confidence            9999999999996667999999999999999998765332111000 00001111                  1111111


Q ss_pred             eEeeeccCCCcEEEEEEc-CCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE----------------
Q 010784          337 KVMTPAICKPILHSFSIM-PSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL----------------  398 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~~-~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l----------------  398 (501)
                      ......+|...+.++.|+ |+++.+++++.|+ +++||+..++..      ..+..|...+..+                
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY------NEISDSTMKLGPKNLLPNVQGISLFPSLL  319 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------------CCSCSEEEECSSCCSS
T ss_pred             eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC------ceEeeecCccccEEEccccccccccCcce
Confidence            122334678889999987 7999999999998 999999886543      3333333333332                


Q ss_pred             --EecC--C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          399 --HMDP--Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       399 --~~~~--~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                        .++|  + .++++|+.||.|++||+.+++.+..+     ..|...|.+++|+|||++||+++  ++|. .+|.
T Consensus       320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-----~~~~~~V~svafspdG~~LA~as--~~Gv-~lvr  386 (393)
T 4gq1_A          320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-----IQLGMPIVDFCWHQDGSHLAIAT--EGSV-LLTR  386 (393)
T ss_dssp             CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE-----EECSSCEEEEEECTTSSEEEEEE--SSEE-EEEE
T ss_pred             eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe-----cCCCCcEEEEEEcCCCCEEEEEe--CCCe-EEEE
Confidence              2333  2 57888999999999999999888877     45677899999999999999998  4464 4443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-32  Score=262.08  Aligned_cols=285  Identities=12%  Similarity=0.090  Sum_probs=221.3

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccc---cceecc-------------------------------------
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY---YRATLS-------------------------------------  150 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~---~~~~~~-------------------------------------  150 (501)
                      .++++++|+++|.+++++ .++.|++||+.++ +   .+..+.                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSP-NHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETT-TEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCC-CcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            578999999999977766 4678999999886 4   344443                                     


Q ss_pred             -----------------cCCcceeEEEeeccCcCcccccCCCCcCcEE-EEeeCCCceEEec-C---Cceeeecc--CCC
Q 010784          151 -----------------DHKARITCMRLFPLHETSLFRSEPQRTENVL-VTSSCDHSIRLWW-K---GSCQRCFK--GHN  206 (501)
Q Consensus       151 -----------------~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vwd-~---~~~~~~~~--~h~  206 (501)
                                       +|.+.|++++|+|             ++++| ++|+.||.|++|| .   +..+..+.  .|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  149 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-------------DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS  149 (450)
T ss_dssp             -----------------CCCCCEEEEEECT-------------TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcC-------------CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC
Confidence                             3444799999998             78886 8999999999998 3   45666665  577


Q ss_pred             CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC---CeEEEEEeCCCeE
Q 010784          207 GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK---SFLLVTISKDSKV  283 (501)
Q Consensus       207 ~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~~l~s~s~dg~v  283 (501)
                      ..|.+++|+    +++++|++|+.||.|++|++.++....  .....+.+|...|.+++|+| +   +.+|++|+.|+.|
T Consensus       150 ~~v~~~~~s----p~~~~l~~~~~~g~v~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i  222 (450)
T 2vdu_B          150 KRPNAISIA----EDDTTVIIADKFGDVYSIDINSIPEEK--FTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHI  222 (450)
T ss_dssp             SCEEEEEEC----TTSSEEEEEETTSEEEEEETTSCCCSS--CCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCE
T ss_pred             CCceEEEEc----CCCCEEEEEeCCCcEEEEecCCccccc--ccceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcE
Confidence            899999997    899999999999999999998765300  02336778999999999998 6   8899999999999


Q ss_pred             EEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784          284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG  363 (501)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  363 (501)
                      ++||+++++.+.                                           ..+.+|...|.+++|+ ++++|+++
T Consensus       223 ~vwd~~~~~~~~-------------------------------------------~~~~~h~~~v~~~~~s-d~~~l~s~  258 (450)
T 2vdu_B          223 KISHYPQCFIVD-------------------------------------------KWLFGHKHFVSSICCG-KDYLLLSA  258 (450)
T ss_dssp             EEEEESCTTCEE-------------------------------------------EECCCCSSCEEEEEEC-STTEEEEE
T ss_pred             EEEECCCCceee-------------------------------------------eeecCCCCceEEEEEC-CCCEEEEE
Confidence            999998764311                                           1144688999999999 99999999


Q ss_pred             cCCc-EEEEecCCCCCCCCCCCccccc-------------------------CcccCeEEEEecCC-eEEEEec-CCCcE
Q 010784          364 GIGK-AMTWDIRRSQDAVKPQPMAELD-------------------------GHVGSVTQLHMDPY-KIVTGGR-DDLRI  415 (501)
Q Consensus       364 ~~d~-i~iwd~~~~~~~~~~~~~~~~~-------------------------~h~~~v~~l~~~~~-~~l~~gs-~dg~i  415 (501)
                      +.|+ |++||+++++.+      ..+.                         .....|.+++|+|+ +++++++ .|+.|
T Consensus       259 ~~d~~v~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i  332 (450)
T 2vdu_B          259 GGDDKIFAWDWKTGKNL------STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCI  332 (450)
T ss_dssp             ESSSEEEEEETTTCCEE------EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEE
T ss_pred             eCCCeEEEEECCCCcEe------eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeE
Confidence            9998 999999987654      3332                         22457899999999 7777766 89999


Q ss_pred             EEEeC--CCc---ccccccccCCCCCCCcceeeeEeeccccEEEEeecC----CCceEEEeeccCCc
Q 010784          416 NIWET--DTG---MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG----EPGLLQFRDFSNAT  473 (501)
Q Consensus       416 ~iwd~--~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d----~~g~i~~w~~~~~~  473 (501)
                      ++|++  .++   +.+..+.     .+ ..+.+++|+|++.++++++.+    .+..|.+|.+....
T Consensus       333 ~iw~~~~~~~~~l~~~~~~~-----~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~  393 (450)
T 2vdu_B          333 IILEMSEKQKGDLALKQIIT-----FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNE  393 (450)
T ss_dssp             EEEEECSSSTTCEEEEEEEE-----CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred             EEEEeccCCCCceeeccEec-----cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCC
Confidence            99999  555   5566663     33 679999999965444444421    14568999887654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=266.91  Aligned_cols=266  Identities=11%  Similarity=0.158  Sum_probs=203.9

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc-----------eeeeccCCC-----------
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS-----------CQRCFKGHN-----------  206 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~-----------~~~~~~~h~-----------  206 (501)
                      .|.+.|++++|+|             ++++|++|+.||.|+|||  .+.           ....+.+|.           
T Consensus        26 ~~~~~V~~v~~s~-------------~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~   92 (447)
T 3dw8_B           26 AEADIISTVEFNH-------------SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEI   92 (447)
T ss_dssp             CGGGSEEEEEECS-------------SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEE
T ss_pred             cccCcEEEEEECC-------------CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccc
Confidence            4678999999999             899999999999999999  333           467788998           


Q ss_pred             -CceEEEEeeecCCCCC--CEEEEeeCCCcEEEEeccCCCcccc---------------------c------------cc
Q 010784          207 -GPVSTLSDKLLGDGSG--KILASGGEDATVRLWSLSSSGKRGQ---------------------Q------------AL  250 (501)
Q Consensus       207 -~~v~~l~~s~~~~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~---------------------~------------~~  250 (501)
                       ..|.+++|+    +++  .+|++|+.||.|++||+.++.....                     .            ..
T Consensus        93 ~~~V~~l~~~----~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (447)
T 3dw8_B           93 EEKINKIRWL----PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP  168 (447)
T ss_dssp             CCCCCEEEEC----CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred             cCceEEEEEc----CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence             889999997    666  7999999999999999976432000                     0            00


Q ss_pred             e-eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784          251 K-ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT  329 (501)
Q Consensus       251 ~-~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  329 (501)
                      . ....+|...|.+++|+| ++.+|++| .|+.|++||+++....                                +.+
T Consensus       169 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~--------------------------------~~~  214 (447)
T 3dw8_B          169 RRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRS--------------------------------FNI  214 (447)
T ss_dssp             EEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEE--------------------------------EEE
T ss_pred             eEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCce--------------------------------eee
Confidence            1 12468999999999998 78899998 7999999999843210                                011


Q ss_pred             EEcCCCceEeeeccCCCcEEEEEEcCCC-cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCccc------------Ce
Q 010784          330 IDLRTMQKVMTPAICKPILHSFSIMPSK-SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVG------------SV  395 (501)
Q Consensus       330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~------------~v  395 (501)
                      +++.    ...+.+|...|.+++|+|++ ++|++|+.|+ |++||+++++..  ...+..+..|..            .|
T Consensus       215 ~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v  288 (447)
T 3dw8_B          215 VDIK----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC--DRHSKLFEEPEDPSNRSFFSEIISSI  288 (447)
T ss_dssp             EECC----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS--CTTCEEECCC-----CCHHHHHTTCE
T ss_pred             eecc----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc--cceeeEeccCCCccccccccccCceE
Confidence            1111    01356789999999999998 9999999999 999999987753  233467777775            89


Q ss_pred             EEEEecCC-eEEEEecCCCcEEEEeCCC-cccccccccCCCCCC-------Cc---ceeeeEeeccccEEEEeecCCCce
Q 010784          396 TQLHMDPY-KIVTGGRDDLRINIWETDT-GMLANSLLCNYPEEA-------DI---STGCSAMAVSGCRIVTASYGEPGL  463 (501)
Q Consensus       396 ~~l~~~~~-~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~-------~~---~v~~~~~s~~g~~l~s~~~d~~g~  463 (501)
                      ++++|+|+ +++++++. +.|++||+.+ ++++.++..+.....       ..   .+..++|+|++++|++|+  .||.
T Consensus       289 ~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s--~dg~  365 (447)
T 3dw8_B          289 SDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS--YNNF  365 (447)
T ss_dssp             EEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC--STTE
T ss_pred             EEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec--cCCE
Confidence            99999999 88888877 9999999997 888888854321000       00   133489999999999999  6699


Q ss_pred             EEEeeccCCccce
Q 010784          464 LQFRDFSNATCPV  476 (501)
Q Consensus       464 i~~w~~~~~~~~~  476 (501)
                      |++||+..+....
T Consensus       366 v~iwd~~~~~~~~  378 (447)
T 3dw8_B          366 FRMFDRNTKRDIT  378 (447)
T ss_dssp             EEEEETTTCCEEE
T ss_pred             EEEEEcCCCccee
Confidence            9999998876543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9e-33  Score=260.46  Aligned_cols=286  Identities=13%  Similarity=0.078  Sum_probs=220.3

Q ss_pred             EEEecCCCCceEEeeCC---cEEEeecCCeeeEEEEeccc-ccccceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          105 CFYSVAKPHDHILLDNN---DIFSTQGSSIQNIKIDNFLS-ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~---~~~~~~g~~d~~i~vw~~~~-~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      .+..|...|++++|+|+   |.++++|+.|+.|++||+.+ +......+.+|.+.|++++|+|             ++++
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------~~~~  100 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-------------DGSK  100 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-------------TSSE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-------------CCCE
Confidence            34567788999999999   69999999999999999997 4444478899999999999999             8999


Q ss_pred             EEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          181 LVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       181 l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      |++++.||.|++|| .......+..|...|.+++|++  .+++.+|++|+.||.|++||+.++.      .+..+..+. 
T Consensus       101 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~-  171 (368)
T 3mmy_A          101 VFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIK--APNYSCVMTGSWDKTLKFWDTRSSN------PMMVLQLPE-  171 (368)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEE--CSSCEEEEEEETTSEEEEECSSCSS------CSEEEECSS-
T ss_pred             EEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEe--CCCCCEEEEccCCCcEEEEECCCCc------EEEEEecCC-
Confidence            99999999999999 3333444667999999999932  2788999999999999999999876      356666554 


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC----CeEEEEe-CCcEEEEEcCC
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE----SMLYIAS-GSSVVTIDLRT  334 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~i~~~d~~~  334 (501)
                      .+.++.+.+   ..+++++.++.+++|+++......... ............+....    +.++.++ ++.+.+||++.
T Consensus       172 ~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  247 (368)
T 3mmy_A          172 RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRI-ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP  247 (368)
T ss_dssp             CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEEC-CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred             CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhc-cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence            566666653   378888999999999998764322111 00011112222222222    2244443 35899999998


Q ss_pred             C---ceEeeeccCCC------------cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784          335 M---QKVMTPAICKP------------ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL  398 (501)
Q Consensus       335 ~---~~~~~~~~~~~------------~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  398 (501)
                      .   ..+..+..|..            .|.+++|+|++++|++++.|+ |++||+.+++.+      ..+.+|...|+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~v~~~  321 (368)
T 3mmy_A          248 PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL------KTSEQLDQPISAC  321 (368)
T ss_dssp             SCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE------EECCCCSSCEEEE
T ss_pred             CCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE------EEecCCCCCceEE
Confidence            7   55667777765            799999999999999999888 999999987654      8888999999999


Q ss_pred             EecCC-eEEEEecCCCcEEEEeCCC
Q 010784          399 HMDPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       399 ~~~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      +|+|+ ++|++++.|+..+.|++.+
T Consensus       322 ~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          322 CFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             EECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             EECCCCCeEEEEecccccccccccC
Confidence            99999 8888888888665555443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.4e-32  Score=261.03  Aligned_cols=258  Identities=17%  Similarity=0.287  Sum_probs=213.1

Q ss_pred             eEEEecCCCCceEEeeCC-cEEEeecCCeeeEEEEecccc---------cccceecccCCcceeEEEeeccCcCcccccC
Q 010784          104 VCFYSVAKPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSE---------SYYRATLSDHKARITCMRLFPLHETSLFRSE  173 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~---------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~  173 (501)
                      .....|...|++++++|+ +.++++|+.+|.|++|++.+.         ......+.+|...|++++|+|          
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----------  191 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP----------  191 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT----------
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC----------
Confidence            456778889999999997 789999999999999999862         367788899999999999999          


Q ss_pred             CCCcCc-EEEEeeCCCceEEec--CCce-------eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCC
Q 010784          174 PQRTEN-VLVTSSCDHSIRLWW--KGSC-------QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG  243 (501)
Q Consensus       174 ~~~~~~-~l~s~~~dg~i~vwd--~~~~-------~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~  243 (501)
                         ++. +|++|+.||.|++||  .+..       ...+.+|...|.+++|+|   .++.+|++++.||.|++||++++.
T Consensus       192 ---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p---~~~~~l~s~~~dg~i~i~d~~~~~  265 (430)
T 2xyi_A          192 ---NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL---LHESLFGSVADDQKLMIWDTRNNN  265 (430)
T ss_dssp             ---TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECS---SCTTEEEEEETTSEEEEEETTCSC
T ss_pred             ---CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeC---CCCCEEEEEeCCCeEEEEECCCCC
Confidence               566 999999999999999  2111       455678999999999972   267899999999999999999763


Q ss_pred             ccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe
Q 010784          244 KRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS  323 (501)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (501)
                      .   ......+..|...|++++|+|.+..++++|+.||.|++||+++..                               
T Consensus       266 ~---~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------------------------------  311 (430)
T 2xyi_A          266 T---SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-------------------------------  311 (430)
T ss_dssp             S---SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------------------------------
T ss_pred             C---CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------------------------------
Confidence            1   114666778999999999998666689999999999999998742                               


Q ss_pred             CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC-cEEEEEcCCc-EEEEecCCCCCCC--------CCCCcccccCccc
Q 010784          324 GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK-SLICTGGIGK-AMTWDIRRSQDAV--------KPQPMAELDGHVG  393 (501)
Q Consensus       324 ~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~--------~~~~~~~~~~h~~  393 (501)
                                  +.+..+..|...|.+++|+|++ .+|++++.|+ |++||+.......        ....+..+.+|..
T Consensus       312 ------------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  379 (430)
T 2xyi_A          312 ------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA  379 (430)
T ss_dssp             ------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS
T ss_pred             ------------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC
Confidence                        1234556789999999999998 4788888888 9999998743210        0234567788999


Q ss_pred             CeEEEEecCC-e-EEEEecCCCcEEEEeCCCc
Q 010784          394 SVTQLHMDPY-K-IVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       394 ~v~~l~~~~~-~-~l~~gs~dg~i~iwd~~~~  423 (501)
                      .|++++|+|+ . ++++++.||.|++|++...
T Consensus       380 ~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          380 KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9999999999 6 8999999999999999754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=9.1e-32  Score=251.05  Aligned_cols=258  Identities=13%  Similarity=0.068  Sum_probs=204.7

Q ss_pred             eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc---eeeeccCCCCceEEEEeeecCCCC
Q 010784          147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS---CQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~---~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      ....+|.+.|++++|+|             ++++|++++.||.|++||  .+.   ....+.+|...|.+++|+    ++
T Consensus         5 ~~~~~h~~~v~~~~~s~-------------~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~   67 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIP-------------SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI----DN   67 (342)
T ss_dssp             ECSSCCSSCEEEEEEEG-------------GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEE----ES
T ss_pred             ecccCCCCcEEEEEEcC-------------CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEEC----CC
Confidence            34568999999999999             889999999999999999  333   245566899999999998    78


Q ss_pred             CC-EEEEeeCCCcEEEEec-cCCCccccccceeeccC--CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784          222 GK-ILASGGEDATVRLWSL-SSSGKRGQQALKATLYG--HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       222 ~~-~l~sg~~dg~i~iwd~-~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  297 (501)
                      ++ +|++|+.||.|++||+ .++.       ...+.+  |...|.+++|+|  +..+++++.|+.|++||+++.......
T Consensus        68 ~~~~l~~~~~dg~i~~wd~~~~~~-------~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~  138 (342)
T 1yfq_A           68 TDLQIYVGTVQGEILKVDLIGSPS-------FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             SSEEEEEEETTSCEEEECSSSSSS-------EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             CCcEEEEEcCCCeEEEEEeccCCc-------eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEccccccccccc
Confidence            99 9999999999999999 7764       467778  999999999997  779999999999999998761100000


Q ss_pred             ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC-
Q 010784          298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR-  375 (501)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~-  375 (501)
                                                         ..++.+..+. |...|.+++|+|++  +++++.++ |++||+++ 
T Consensus       139 -----------------------------------~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~  180 (342)
T 1yfq_A          139 -----------------------------------VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             -----------------------------------EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCC
T ss_pred             -----------------------------------ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcc
Confidence                                               0001112223 67889999999887  88888777 99999998 


Q ss_pred             CCCCCCCCCcccccCcccCeEEEEecC-C-eEEEEecCCCcEEEEeCCCc------ccccccccCCC----CCCCcceee
Q 010784          376 SQDAVKPQPMAELDGHVGSVTQLHMDP-Y-KIVTGGRDDLRINIWETDTG------MLANSLLCNYP----EEADISTGC  443 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~-~-~~l~~gs~dg~i~iwd~~~~------~~~~~~~~~~~----~~~~~~v~~  443 (501)
                      ....    .......|...|.+++|+| + .++++++.||.|++|++...      +....+..+..    ..|...|.+
T Consensus       181 ~~~~----~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  256 (342)
T 1yfq_A          181 EDDN----GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS  256 (342)
T ss_dssp             TTCC----CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred             cccc----ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEE
Confidence            5432    1234456788999999999 8 88888899999999999887      77777754321    123558999


Q ss_pred             eEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          444 SAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       444 ~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      ++|+|++++|++++  .||.|++||+..+..
T Consensus       257 ~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~  285 (342)
T 1yfq_A          257 IEFSPRHKFLYTAG--SDGIISCWNLQTRKK  285 (342)
T ss_dssp             EEECTTTCCEEEEE--TTSCEEEEETTTTEE
T ss_pred             EEEcCCCCEEEEec--CCceEEEEcCccHhH
Confidence            99999999999999  669999999875543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-32  Score=253.38  Aligned_cols=269  Identities=8%  Similarity=0.030  Sum_probs=204.1

Q ss_pred             eeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC
Q 010784          118 LDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG  196 (501)
Q Consensus       118 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~  196 (501)
                      +..++.++++|+.|+.|++||+.++ +.+..+.  ...|.++.|+|             +   +++++.|++|++|+ .+
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~-~~~~~~~--~~~v~~~~~~~-------------~---~~s~s~D~~i~~w~~~~  104 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDS-KTITTIT--TPNPRTGGEHP-------------A---IISRGPCNRLLLLYPGN  104 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSS-SCEEEEE--EECCCTTCCCC-------------S---EEEECSTTEEEEEETTT
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCC-cEEEEEe--cCCceeeeeCC-------------c---eEEecCCCeEEEEEccC
Confidence            3468899999999999999999985 6566655  46677788877             4   99999999999996 21


Q ss_pred             ----------ceeeec-cCCCCceEEEEeeecCCC--CCCEEEEeeCCCcEEEEeccCCCccccccceeec-cCCCCcee
Q 010784          197 ----------SCQRCF-KGHNGPVSTLSDKLLGDG--SGKILASGGEDATVRLWSLSSSGKRGQQALKATL-YGHEKPIK  262 (501)
Q Consensus       197 ----------~~~~~~-~~h~~~v~~l~~s~~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~  262 (501)
                                ..+..+ .+|.++|.+++|+    +  +++++++|+.||.|++||+.++..      .... ..|...|.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~s~s~dg~i~~wd~~~~~~------~~~~~~~~~~~i~  174 (343)
T 3lrv_A          105 QITILDSKTNKVLREIEVDSANEIIYMYGH----NEVNTEYFIWADNRGTIGFQSYEDDSQ------YIVHSAKSDVEYS  174 (343)
T ss_dssp             EEEEEETTTCCEEEEEECCCSSCEEEEECC----C---CCEEEEEETTCCEEEEESSSSCE------EEEECCCSSCCCC
T ss_pred             ceEEeecCCcceeEEeecCCCCCEEEEEcC----CCCCCCEEEEEeCCCcEEEEECCCCcE------EEEEecCCCCceE
Confidence                      213333 2677899999997    7  899999999999999999998763      3433 34566899


Q ss_pred             EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784          263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA  342 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  342 (501)
                      +++|+| ++.+|++|+.||.|++||+++++...                                           ..+.
T Consensus       175 ~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~-------------------------------------------~~~~  210 (343)
T 3lrv_A          175 SGVLHK-DSLLLALYSPDGILDVYNLSSPDQAS-------------------------------------------SRFP  210 (343)
T ss_dssp             EEEECT-TSCEEEEECTTSCEEEEESSCTTSCC-------------------------------------------EECC
T ss_pred             EEEECC-CCCEEEEEcCCCEEEEEECCCCCCCc-------------------------------------------cEEe
Confidence            999998 78899999999999999999875320                                           2344


Q ss_pred             c-CCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeE--EEEecCC-eEEEEecC-CCcEEE
Q 010784          343 I-CKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVT--QLHMDPY-KIVTGGRD-DLRINI  417 (501)
Q Consensus       343 ~-~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~-~~l~~gs~-dg~i~i  417 (501)
                      . |.+.|.+++|+|++.+|++++++.|++||+++.+..   ..+..+..|...+.  +++|+|+ +++++++. |+.|++
T Consensus       211 ~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v  287 (343)
T 3lrv_A          211 VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGT---LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTI  287 (343)
T ss_dssp             CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTC---BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcc---eeecccccccccccceEEEECCCCCEEEEecCCCCcEEE
Confidence            5 889999999999999999999666999999987654   11222333444444  6999999 88888777 999999


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeec---cccEEEEeecCCCceEEEeeccCCc
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAV---SGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      |++.........         ..+..++|++   +++.+++++  .+|.+.++-...+.
T Consensus       288 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~--~d~~~~~~~~~~~~  335 (343)
T 3lrv_A          288 YKFDKKTKNWTK---------DEESALCLQSDTADFTDMDVVC--GDGGIAAILKTNDS  335 (343)
T ss_dssp             EEECTTTCSEEE---------EEEEECCC----CCCCEEEEEE--ETTEEEEEEECSSE
T ss_pred             EEEcccccceEe---------cCceeEecCccccccceeEEEe--cCCceEEEEecCCe
Confidence            999765433222         3577888988   888999998  55888887655444

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9e-31  Score=241.62  Aligned_cols=259  Identities=17%  Similarity=0.281  Sum_probs=213.6

Q ss_pred             eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeec--cCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784          156 ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCF--KGHNGPVSTLSDKLLGDGSGKILASGGED  231 (501)
Q Consensus       156 V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~--~~h~~~v~~l~~s~~~~~~~~~l~sg~~d  231 (501)
                      .++|+||+             + ++|++| .|++|+|||  ++++++.+  .+|...|++++|+    +++++|++|+.|
T Consensus        28 ~~~l~WS~-------------~-~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~----~~~~~l~sgs~D   88 (318)
T 4ggc_A           28 LNLVDWSS-------------G-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI----KEGNYLAVGTSS   88 (318)
T ss_dssp             CBCEEECT-------------T-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC----TTSSEEEEEETT
T ss_pred             ceEEEECC-------------C-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC----CCCCEEEEEECC
Confidence            57799998             4 467665 599999999  77777665  4678889999997    899999999999


Q ss_pred             CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee
Q 010784          232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD  311 (501)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  311 (501)
                      |+|++||+.+++      .+..+.+|...+.++.+.   +..+++++.++.+++|+.....                   
T Consensus        89 g~v~iw~~~~~~------~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~-------------------  140 (318)
T 4ggc_A           89 AEVQLWDVQQQK------RLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAE-------------------  140 (318)
T ss_dssp             SEEEEEETTTTE------EEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSS-------------------
T ss_pred             CcEEEeecCCce------eEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCc-------------------
Confidence            999999999876      578888999988876654   4589999999999999987653                   


Q ss_pred             eecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC
Q 010784          312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG  390 (501)
Q Consensus       312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  390 (501)
                                              ..+..+.+|...+..+.++++++++++++.|+ |++||+++++..  .........
T Consensus       141 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~  194 (318)
T 4ggc_A          141 ------------------------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQ  194 (318)
T ss_dssp             ------------------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB--SCCSEEECC
T ss_pred             ------------------------eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc--ccceeeecc
Confidence                                    23345667899999999999999999999999 999999987754  344566677


Q ss_pred             cccCeEEEEecCC--e--EEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784          391 HVGSVTQLHMDPY--K--IVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQF  466 (501)
Q Consensus       391 h~~~v~~l~~~~~--~--~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~  466 (501)
                      |.+.|.+++++|.  .  .+++++.++.|++||..........      .+...+..+.|+++++.+++++...|+.|++
T Consensus       195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~i  268 (318)
T 4ggc_A          195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV------DAHSQVCSILWSPHYKELISGHGFAQNQLVI  268 (318)
T ss_dssp             CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE------ECSSCEEEEEEETTTTEEEEEECTTTCCEEE
T ss_pred             cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc------cceeeeeeeeecccccceEEEEEcCCCEEEE
Confidence            8889999999887  3  3456788999999999988776665      3456789999999999988876546799999


Q ss_pred             eecc---------------------CCccceeecCCCCceeeecccCC
Q 010784          467 RDFS---------------------NATCPVLKHEVQNDSKFWGPQCY  493 (501)
Q Consensus       467 w~~~---------------------~~~~~~~s~~~d~~~~~w~~~~~  493 (501)
                      ||+.                     +.+..+++++.|+++++|++...
T Consensus       269 wd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          269 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            9954                     34566889999999999998643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.2e-31  Score=249.12  Aligned_cols=290  Identities=8%  Similarity=0.076  Sum_probs=200.4

Q ss_pred             EEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEE
Q 010784          136 IDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLS  213 (501)
Q Consensus       136 vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~  213 (501)
                      +|++.+ .+.+..+.+|.+.|++++|+|             +|++|++|+.+| ++|||  .+......  +...+..++
T Consensus         3 i~s~~~-~~~~~~~~~h~~~V~~v~fs~-------------dg~~la~g~~~~-~~iw~~~~~~~~~~~--~~~~~~~~~   65 (355)
T 3vu4_A            3 LGSMIT-RNPIVPENHVSNPVTDYEFNQ-------------DQSCLILSTLKS-FEIYNVHPVAHIMSQ--EMRHLSKVR   65 (355)
T ss_dssp             -----------------CCCCCEEEECT-------------TSSEEEEECSSE-EEEEEETTEEEEEEE--ECSCCCEEE
T ss_pred             cccccc-cCCccccccCCCceEEEEECC-------------CCCEEEEEcCCE-EEEEecCCcceeeee--ecCCeEEEE
Confidence            345555 366667789999999999999             899999998775 78999  33333322  223477777


Q ss_pred             eeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC-
Q 010784          214 DKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS-  291 (501)
Q Consensus       214 ~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~-  291 (501)
                      +.    ++++.+ ++|+.|+.|++||+.+++      .+..+. +...|.++.+++ +  .++++ .|+.|++||+.++ 
T Consensus        66 ~~----~~~~~~~~~~~~d~~v~iWd~~~~~------~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~  130 (355)
T 3vu4_A           66 ML----HRTNYVAFVTGVKEVVHIWDDVKKQ------DVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPW  130 (355)
T ss_dssp             EC----TTSSEEEEECSSTTEEEEEETTTTE------EEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTC
T ss_pred             Ec----CCCCEEEEEECCccEEEEEECCCCc------EEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCc
Confidence            75    455555 678888999999999876      355555 677899999975 2  34444 4789999999987 


Q ss_pred             ccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCc----------------eEeeeccCCCcEEEEE
Q 010784          292 SAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQ----------------KVMTPAICKPILHSFS  352 (501)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~----------------~~~~~~~~~~~v~~v~  352 (501)
                      +.+.....      ......+  .+..+.++++   +.|++||+++++                .+..+.+|.+.|.+++
T Consensus       131 ~~~~~~~~------~~~~~~~--s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~  202 (355)
T 3vu4_A          131 KRITDDIR------FGGVCEF--SNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR  202 (355)
T ss_dssp             CBSSCCEE------EEEEEEE--ETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE
T ss_pred             eeeEEecc------CCceEEE--EccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE
Confidence            54433222      1112222  2244444423   489999999865                2678889999999999


Q ss_pred             EcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCccccc-C-cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccccc
Q 010784          353 IMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELD-G-HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLAN  427 (501)
Q Consensus       353 ~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~-~-h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~  427 (501)
                      |+|++++|++|+.|+  |++||+++++.+      .++. + |...|++++|+|+ +++++++.|++|++||+.++....
T Consensus       203 ~s~~g~~l~s~s~d~~~v~iwd~~~~~~~------~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~  276 (355)
T 3vu4_A          203 LNRKSDMVATCSQDGTIIRVFKTEDGVLV------REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK  276 (355)
T ss_dssp             ECTTSSEEEEEETTCSEEEEEETTTCCEE------EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEE------EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc
Confidence            999999999999665  999999987654      7777 5 9999999999999 999999999999999997653211


Q ss_pred             --cccc----------------CCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          428 --SLLC----------------NYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       428 --~~~~----------------~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                        .+..                ..+.........++|++||++|++++  .||.+++|++..++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~--~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          277 RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWP--HTRMIETFKVVFDD  338 (355)
T ss_dssp             SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEET--TTTEEEEEEEEEET
T ss_pred             cccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEe--CCCeEEEEEEEcCC
Confidence              1100                00111222346789999999999999  66999999987654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.5e-31  Score=247.50  Aligned_cols=291  Identities=15%  Similarity=0.180  Sum_probs=211.0

Q ss_pred             ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CC----ceeeeccCCCCceEEEEeeecCC
Q 010784          146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KG----SCQRCFKGHNGPVSTLSDKLLGD  219 (501)
Q Consensus       146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~----~~~~~~~~h~~~v~~l~~s~~~~  219 (501)
                      ...+.+|.+.|++++|+|             ++++|++|+.||.|++||  .+    .....+.+|...|.+++|+    
T Consensus         4 ~~~~~gH~~~v~~~~~~~-------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~----   66 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDF-------------YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA----   66 (351)
T ss_dssp             CCEECCCSSCEEEEEECS-------------SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEEC----
T ss_pred             cccCcccccceeEEEEcC-------------CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEc----
Confidence            456789999999999999             899999999999999999  33    3567778999999999997    


Q ss_pred             C--CCCEEEEeeCCCcEEEEeccCCCccc---cccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCcc
Q 010784          220 G--SGKILASGGEDATVRLWSLSSSGKRG---QQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSA  293 (501)
Q Consensus       220 ~--~~~~l~sg~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~  293 (501)
                      +  ++++|++|+.||.|++||+.++....   .......+..|...|.+++|+|.. +.+|++++.||.|++||+++++.
T Consensus        67 ~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  146 (351)
T 3f3f_A           67 SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD  146 (351)
T ss_dssp             CGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred             CCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence            5  58999999999999999998864211   113467788999999999999832 78999999999999999998865


Q ss_pred             ccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCCc-EE
Q 010784          294 VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIGK-AM  369 (501)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~-i~  369 (501)
                      +..........      .                         .......|...+.+++|+|+   +.++++++.++ +.
T Consensus       147 ~~~~~~~~~~~------~-------------------------~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~  195 (351)
T 3f3f_A          147 LRSWTLTSEMK------V-------------------------LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII  195 (351)
T ss_dssp             TTCCEEEEEEE------S-------------------------CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEE
T ss_pred             hcccccccccc------c-------------------------cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEE
Confidence            44322111000      0                         00111246788999999997   99999999999 87


Q ss_pred             EEecCCCCCCCCCCCcccccCcccCeEEEEecCC-----eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeee
Q 010784          370 TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-----KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCS  444 (501)
Q Consensus       370 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  444 (501)
                      +|+...++.    ..+..+.+|...|++++|+|+     .++++|+.||.|++||+.++.......     .+.......
T Consensus       196 ~~~~~~~~~----~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~  266 (351)
T 3f3f_A          196 YQRGKDGKL----HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE-----ESLTNSNMF  266 (351)
T ss_dssp             EEECTTSCE----EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------
T ss_pred             EEccCCCce----eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccC-----Ccccceecc
Confidence            777766542    235778899999999999999     589999999999999998765443331     111112222


Q ss_pred             Eeecccc------------------------EEEEeecCCCceEEEeeccCCccceeecCCCCceeeecccCCC
Q 010784          445 AMAVSGC------------------------RIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQCYS  494 (501)
Q Consensus       445 ~~s~~g~------------------------~l~s~~~d~~g~i~~w~~~~~~~~~~s~~~d~~~~~w~~~~~~  494 (501)
                      ..++...                        .+..-. .+.+.|.-..+.+.+..+++++.|+.+++|++....
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             ------------------------CCSEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             CCCcccccccccccccccceeeeecccccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence            2222222                        222211 144567777788888899999999999999998654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.9e-31  Score=253.34  Aligned_cols=248  Identities=19%  Similarity=0.238  Sum_probs=198.7

Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C-C---ceeeeccCCCCceEEEEeeecCCC-CCCEEEE
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K-G---SCQRCFKGHNGPVSTLSDKLLGDG-SGKILAS  227 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~-~---~~~~~~~~h~~~v~~l~~s~~~~~-~~~~l~s  227 (501)
                      ....++++|.            ...++++++.||.|+||+  . +   ..+..+.+|.+.|++++|+    + ++++|++
T Consensus        36 ~~~~~~~~~~------------~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~----p~~~~~l~s   99 (402)
T 2aq5_A           36 DSGFCAVNPK------------FMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWC----PHNDNVIAS   99 (402)
T ss_dssp             SSCSEEECSS------------EEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEEC----TTCTTEEEE
T ss_pred             CCCcEEECCC------------eEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeC----CCCCCEEEE
Confidence            3445777772            223455688999999998  2 2   2455678999999999997    6 8999999


Q ss_pred             eeCCCcEEEEeccCCCcccc-ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecC
Q 010784          228 GGEDATVRLWSLSSSGKRGQ-QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVP  306 (501)
Q Consensus       228 g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~  306 (501)
                      |+.||.|++||+.++..... ...+..+.+|...|.+++|+|.+.++|++++.||.|++||+++++.             
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-------------  166 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-------------  166 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-------------
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-------------
Confidence            99999999999988632100 0246778899999999999985447999999999999999987642             


Q ss_pred             CCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee--ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCC
Q 010784          307 GVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP--AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQ  383 (501)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~  383 (501)
                                                     +..+  ..|...|.+++|+|++.+|++++.|+ |++||+++++..    
T Consensus       167 -------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----  211 (402)
T 2aq5_A          167 -------------------------------VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV----  211 (402)
T ss_dssp             -------------------------------EEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE----
T ss_pred             -------------------------------cEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee----
Confidence                                           2344  56889999999999999999999888 999999987654    


Q ss_pred             Ccccc-cCcccC-eEEEEecCC-eEEEEe---cCCCcEEEEeCCCccc-ccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784          384 PMAEL-DGHVGS-VTQLHMDPY-KIVTGG---RDDLRINIWETDTGML-ANSLLCNYPEEADISTGCSAMAVSGCRIVTA  456 (501)
Q Consensus       384 ~~~~~-~~h~~~-v~~l~~~~~-~~l~~g---s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  456 (501)
                        ..+ .+|.+. +.+++|+|+ .++++|   +.|+.|++||+.+++. +....    ..+...+..++|+|++++|+++
T Consensus       212 --~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~  285 (402)
T 2aq5_A          212 --AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE----LDTSSGVLLPFFDPDTNIVYLC  285 (402)
T ss_dssp             --EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE----CCCCSSCEEEEEETTTTEEEEE
T ss_pred             --eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe----ccCCCceeEEEEcCCCCEEEEE
Confidence              666 677765 899999999 999998   7999999999998765 33332    2356679999999999999765


Q ss_pred             ecCCCceEEEeeccCCc
Q 010784          457 SYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       457 ~~d~~g~i~~w~~~~~~  473 (501)
                      +. .||.|++|++..+.
T Consensus       286 g~-~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          286 GK-GDSSIRYFEITSEA  301 (402)
T ss_dssp             ET-TCSCEEEEEECSST
T ss_pred             Ec-CCCeEEEEEecCCC
Confidence            43 57999999998766

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.4e-31  Score=249.68  Aligned_cols=245  Identities=10%  Similarity=0.030  Sum_probs=188.3

Q ss_pred             ecCCCCceEEeeCCc---------EEEeecCCeeeEEEEecccccccce--------ecccCCcceeEEEeeccCcCccc
Q 010784          108 SVAKPHDHILLDNND---------IFSTQGSSIQNIKIDNFLSESYYRA--------TLSDHKARITCMRLFPLHETSLF  170 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~---------~~~~~g~~d~~i~vw~~~~~~~~~~--------~~~~h~~~V~~~~~~~~~~~~~~  170 (501)
                      .+...+.+++++++.         ..+++|+.|+.+++|++.+....+.        ....+...+.+++|+|       
T Consensus        71 ~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-------  143 (365)
T 4h5i_A           71 DNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-------  143 (365)
T ss_dssp             TTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-------
T ss_pred             CCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-------
Confidence            344557777776542         2344566789999999876422221        1234556689999999       


Q ss_pred             ccCCCCcCcEEE--EeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc
Q 010784          171 RSEPQRTENVLV--TSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG  246 (501)
Q Consensus       171 ~~~~~~~~~~l~--s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  246 (501)
                            ||++++  +++.|++|+|||  +++++..+. |.+.|.+++|+    |+|+++++++.+ .+++|+..++..  
T Consensus       144 ------Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fs----pdg~~l~s~s~~-~~~~~~~~~~~~--  209 (365)
T 4h5i_A          144 ------EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFS----TDGKVVAYITGS-SLEVISTVTGSC--  209 (365)
T ss_dssp             ------TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEEC----TTSSEEEEECSS-CEEEEETTTCCE--
T ss_pred             ------CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEc----cCCceEEeccce-eEEEEEeccCcc--
Confidence                  888876  455799999999  667777765 78899999997    899999999865 566666666553  


Q ss_pred             cccceeeccCCCCceeEEEEeecCCeEEEEEeCCC----eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEE
Q 010784          247 QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS----KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA  322 (501)
Q Consensus       247 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (501)
                        ........|...|.+++|+| ++..+++++.|+    .+++|++.......                           
T Consensus       210 --~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~---------------------------  259 (365)
T 4h5i_A          210 --IARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSV---------------------------  259 (365)
T ss_dssp             --EEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEE---------------------------
T ss_pred             --eeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecc---------------------------
Confidence              12334567899999999998 788999998887    57788876543210                           


Q ss_pred             eCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc-ccCcccCeEEEEe
Q 010784          323 SGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE-LDGHVGSVTQLHM  400 (501)
Q Consensus       323 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~  400 (501)
                                   .....+.+|...|++++|+|+|++|++|+.|+ |+|||+++++.+      .+ +.+|...|++++|
T Consensus       260 -------------~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~------~~~~~gH~~~V~~v~f  320 (365)
T 4h5i_A          260 -------------LRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS------KIFKQAHSFAITEVTI  320 (365)
T ss_dssp             -------------EEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE------EEETTSSSSCEEEEEE
T ss_pred             -------------eeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE------EEecCcccCCEEEEEE
Confidence                         12245667889999999999999999999999 999999987654      55 5789999999999


Q ss_pred             cCC-eEEEEecCCCcEEEEeCCC
Q 010784          401 DPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       401 ~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      +|+ ++|++||.|++|+|||+..
T Consensus       321 Spdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          321 SPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCCCEEEEEeCCCeEEEEEcCC
Confidence            999 9999999999999999964

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-32  Score=257.23  Aligned_cols=289  Identities=11%  Similarity=0.070  Sum_probs=221.7

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      ..|+..+.+++|+|+|       .++.+.+|+.+.  .....+ .|.+.|.+++|+|             +|.+||+++.
T Consensus        49 ~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~--~~~~~~-~~~~~V~~vawSP-------------dG~~LAs~s~  105 (588)
T 2j04_A           49 NCNSKNLFHVKEFPLE-------FENKLDFELAQQ--NGLLNS-QPVCYPRVCKPSP-------------IDDWMAVLSN  105 (588)
T ss_dssp             SSBGGGTEEEEEECCC-------CCCTTTTSCCCS--SCSSTT-SCSCCEEEEEECS-------------SSSCEEEEET
T ss_pred             cCCCccEEEEEECCCC-------CcceEEEEeCCC--ceEeec-CCCCcEEEEEECC-------------CCCEEEEEeC
Confidence            4688889999999999       577777777542  222233 5688999999999             8999999999


Q ss_pred             CCceEEecCCceeeeccCCCC-----ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc-cccceeec----cC
Q 010784          187 DHSIRLWWKGSCQRCFKGHNG-----PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG-QQALKATL----YG  256 (501)
Q Consensus       187 dg~i~vwd~~~~~~~~~~h~~-----~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~----~~  256 (501)
                      ||+|++||...++..+. |..     .|.+++||    |+|++|++|+.||+|++||+.++.... +...+.++    .+
T Consensus       106 dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafS----PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g  180 (588)
T 2j04_A          106 NGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWN----PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG  180 (588)
T ss_dssp             TSCEEEEETTEEEEECC-CSSCSTTTCEEEEEEC----SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT
T ss_pred             CCcEEEEeCCceeeecc-CCCccccccEEEEEEc----CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc
Confidence            99999999555777777 665     49999998    899999999999999999998864100 00123454    67


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      |...|.+++|+| ++  +++++.|+.|++||+.++.......... ..+...+.++.+++..+..++++.|++||+.+++
T Consensus       181 h~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFsg~~LASa~~~tIkLWd~~~~~  256 (588)
T 2j04_A          181 SKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIVDYKVVLTCPGYVHKIDLKNYS  256 (588)
T ss_dssp             CCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEETTEEEEECSSEEEEEETTTTE
T ss_pred             ccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEECCEEEEEeCCeEEEEECCCCe
Confidence            889999999998 55  8889999999999998876321000000 0234567777777555566666799999999988


Q ss_pred             eEeeeccCCCcEEEEEE--cCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC
Q 010784          337 KVMTPAICKPILHSFSI--MPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL  413 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~--~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg  413 (501)
                      ......+|...+..++|  +|++..++++++++.++|...                      .++++|+ .++++  .|+
T Consensus       257 ~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d----------------------~~~~spd~~l~a~--~d~  312 (588)
T 2j04_A          257 ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLED----------------------ELHVTADNIIAPY--LEK  312 (588)
T ss_dssp             EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESS----------------------SEEEECCCSSHHH--HHH
T ss_pred             EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec----------------------cEEECCCceEEEE--cCC
Confidence            85444479999999999  999999999997766999865                      1558888 66655  399


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      ++++|+...+ .+..+     .+ ...|.+++|||||+.+|+++.
T Consensus       313 ~v~lW~~~g~-~l~~~-----~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          313 KFKKWSTIWN-EFNNY-----ET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             HHHHTTTTTT-SSSSS-----CC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEEECCCC-ceeee-----cc-ceEEEEEEECCCCCEEEEEEe
Confidence            9999997544 34455     22 667999999999999999874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=2e-30  Score=242.62  Aligned_cols=248  Identities=10%  Similarity=0.109  Sum_probs=185.8

Q ss_pred             CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEE
Q 010784          195 KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLL  274 (501)
Q Consensus       195 ~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  274 (501)
                      +...+..+..|...|++++|+    ++|++|++|+.+| +++|++.+...      .....  ...+..+.+.+....++
T Consensus         8 ~~~~~~~~~~h~~~V~~v~fs----~dg~~la~g~~~~-~~iw~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~   74 (355)
T 3vu4_A            8 TRNPIVPENHVSNPVTDYEFN----QDQSCLILSTLKS-FEIYNVHPVAH------IMSQE--MRHLSKVRMLHRTNYVA   74 (355)
T ss_dssp             -----------CCCCCEEEEC----TTSSEEEEECSSE-EEEEEETTEEE------EEEEE--CSCCCEEEECTTSSEEE
T ss_pred             ccCCccccccCCCceEEEEEC----CCCCEEEEEcCCE-EEEEecCCcce------eeeee--cCCeEEEEEcCCCCEEE
Confidence            445566678899999999997    8999999998775 78999887542      22222  22477788887555555


Q ss_pred             EEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC-ceEeeeccCCCcEEEEEE
Q 010784          275 VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM-QKVMTPAICKPILHSFSI  353 (501)
Q Consensus       275 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~v~~  353 (501)
                      ++++.|+.|++||+.+++.+...      .....+.++.++++..+++.++.+++||+.++ +.+..+..   ....+++
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~------~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~  145 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRI------KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEF  145 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEE------ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEE
T ss_pred             EEECCccEEEEEECCCCcEEEEE------ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEE
Confidence            77888999999999998654432      34567888899999999999999999999998 66666554   4445666


Q ss_pred             cCCCcEEEE--EcCCc-EEEEecCCCCCCC---------CCCC-cccccCcccCeEEEEecCC-eEEEEecCCCc-EEEE
Q 010784          354 MPSKSLICT--GGIGK-AMTWDIRRSQDAV---------KPQP-MAELDGHVGSVTQLHMDPY-KIVTGGRDDLR-INIW  418 (501)
Q Consensus       354 ~~~~~~l~~--~~~d~-i~iwd~~~~~~~~---------~~~~-~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~-i~iw  418 (501)
                      ++  .+++.  |+.++ |++||+.+++...         ...+ +..+.+|.+.|++++|+|+ +++++|+.||+ |++|
T Consensus       146 s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          146 SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF  223 (355)
T ss_dssp             ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred             Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence            77  45555  56777 9999999764110         0112 5788999999999999999 99999999998 9999


Q ss_pred             eCCCcccccccccCCCCC-CCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          419 ETDTGMLANSLLCNYPEE-ADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       419 d~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      |+.+++++.++.    .+ |...|.+++|+|+|++|++++  .|+.|++||+..+
T Consensus       224 d~~~~~~~~~~~----~g~h~~~v~~~~~s~~~~~l~s~s--~d~~v~iw~~~~~  272 (355)
T 3vu4_A          224 KTEDGVLVREFR----RGLDRADVVDMKWSTDGSKLAVVS--DKWTLHVFEIFND  272 (355)
T ss_dssp             ETTTCCEEEEEE----CTTCCSCEEEEEECTTSCEEEEEE--TTCEEEEEESSCC
T ss_pred             ECCCCcEEEEEE----cCCCCCcEEEEEECCCCCEEEEEE--CCCEEEEEEccCC
Confidence            999999999984    13 778999999999999999999  6699999998643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=4.4e-30  Score=228.96  Aligned_cols=268  Identities=10%  Similarity=0.073  Sum_probs=186.4

Q ss_pred             CceEEeeCCcE---EEeecCCeeeEEEEeccccc--ccceecccCCcceeEEEeeccCc------------CcccccCCC
Q 010784          113 HDHILLDNNDI---FSTQGSSIQNIKIDNFLSES--YYRATLSDHKARITCMRLFPLHE------------TSLFRSEPQ  175 (501)
Q Consensus       113 i~~~~~~~~~~---~~~~g~~d~~i~vw~~~~~~--~~~~~~~~h~~~V~~~~~~~~~~------------~~~~~~~~~  175 (501)
                      +.++-|...+.   .+++++ ...|++|+..++.  +.++++++|..+|..+.+.|+..            ..+.++.++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            55555554332   455554 5889999999842  78899999999999999998432            134444444


Q ss_pred             Cc----CcEEEEeeCCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEee--CCCcEEEEeccCCCcccccc
Q 010784          176 RT----ENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG--EDATVRLWSLSSSGKRGQQA  249 (501)
Q Consensus       176 ~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~  249 (501)
                      |+    ++.+++++.+  +++|                 .+       ++++++.+++  .|+.|++|++.....     
T Consensus       121 pd~~~~~~~l~s~g~~--~~v~-----------------~l-------~~g~lv~ss~~g~d~~V~~~~~s~dG~-----  169 (356)
T 2w18_A          121 SDDESEKQVLLKSGNI--KAVL-----------------GL-------TKRRLVSSSGTLSDQQVEVMTFAEDGG-----  169 (356)
T ss_dssp             -----CCEEEEEEEEE--EEEE-----------------EE-------TTTEEEEEESSSTTCEEEEEEECTTSC-----
T ss_pred             CCccccccEEEeCCCe--EEEE-----------------ec-------CCCcEEEecccCCCCcEEEEEECCCCc-----
Confidence            55    5555554422  3333                 22       3566666643  699999999965333     


Q ss_pred             ceeeccCCCCceeEEEEeec--CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcE
Q 010784          250 LKATLYGHEKPIKLMSVAGH--KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV  327 (501)
Q Consensus       250 ~~~~~~~~~~~v~~l~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  327 (501)
                      .+..+.+|...++.++|++.  ++..|++++.|++|++||+.+++.+.                                
T Consensus       170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~--------------------------------  217 (356)
T 2w18_A          170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLK--------------------------------  217 (356)
T ss_dssp             EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEE--------------------------------
T ss_pred             eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEE--------------------------------
Confidence            56777789999988888873  56899999999999999999885432                                


Q ss_pred             EEEEcCCCceEeeeccC---CCcEEEEEEcCCCcEE------------EEEcCCc-EEEEecCCCCCCCCCCCcccc---
Q 010784          328 VTIDLRTMQKVMTPAIC---KPILHSFSIMPSKSLI------------CTGGIGK-AMTWDIRRSQDAVKPQPMAEL---  388 (501)
Q Consensus       328 ~~~d~~~~~~~~~~~~~---~~~v~~v~~~~~~~~l------------~~~~~d~-i~iwd~~~~~~~~~~~~~~~~---  388 (501)
                                  ++.+|   ...+.+++|+|+|.++            ++|+.|+ |++||..+++.+      ..+   
T Consensus       218 ------------tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l------~v~~~~  279 (356)
T 2w18_A          218 ------------KMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV------GVMLYC  279 (356)
T ss_dssp             ------------EEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEE------EEEEEC
T ss_pred             ------------EEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE------EEEEee
Confidence                        33332   2356777889988876            5677888 999999987653      222   


Q ss_pred             --cCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcce-eeeEeeccccEEEEeecCCCceEE
Q 010784          389 --DGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIST-GCSAMAVSGCRIVTASYGEPGLLQ  465 (501)
Q Consensus       389 --~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~s~~~d~~g~i~  465 (501)
                        .+|...+.+..++ ..++++|+.|++|+|||+.+++++.++     .+|...+ ..++|+|||++|++|+  .|++|+
T Consensus       280 ~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL-----~gH~~~vvs~vafSPDG~~LaSGS--~D~TIk  351 (356)
T 2w18_A          280 LPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALL-----PPVSDQHWSFVKWSGTDSHLLAGQ--KDGNIF  351 (356)
T ss_dssp             CCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEE-----CCC--CCCCEEEECSSSSEEEEEC--TTSCEE
T ss_pred             ccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEe-----cCCCCCeEEEEEECCCCCEEEEEE--CCCcEE
Confidence              3666555444444 357888899999999999999999999     4555544 4589999999999999  669999


Q ss_pred             Eeecc
Q 010784          466 FRDFS  470 (501)
Q Consensus       466 ~w~~~  470 (501)
                      +||+.
T Consensus       352 lWd~~  356 (356)
T 2w18_A          352 VYHYS  356 (356)
T ss_dssp             EEEEC
T ss_pred             EecCC
Confidence            99963

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=1.4e-29  Score=244.30  Aligned_cols=278  Identities=5%  Similarity=-0.048  Sum_probs=222.0

Q ss_pred             ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccce-----ecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784          108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRA-----TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV  182 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~-----~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (501)
                      .....+.+++++|++.++++++.++.|++||..++ +...     .+.+|.+.|.+++|++             ++.+++
T Consensus       120 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~~~  185 (433)
T 3bws_A          120 KTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG-QTVRLSPPEKYKKKLGFVETISIPE-------------HNELWV  185 (433)
T ss_dssp             ECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTC-CEEEECCCHHHHTTCCEEEEEEEGG-------------GTEEEE
T ss_pred             cCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCC-eEeeecCcccccccCCceeEEEEcC-------------CCEEEE
Confidence            34455779999999999999999999999999985 4445     5668999999999988             789999


Q ss_pred             EeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEE-EeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784          183 TSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILA-SGGEDATVRLWSLSSSGKRGQQALKATLYGHEK  259 (501)
Q Consensus       183 s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  259 (501)
                      +++.|+.|++||  .++.+..+..|...+.+++|+    ++++.++ +++.|+.|++||+.++.      ....+.. ..
T Consensus       186 s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~i~~~d~~~~~------~~~~~~~-~~  254 (433)
T 3bws_A          186 SQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD----PIRDLVYCSNWISEDISVIDRKTKL------EIRKTDK-IG  254 (433)
T ss_dssp             EEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEE----TTTTEEEEEETTTTEEEEEETTTTE------EEEECCC-CS
T ss_pred             EECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEc----CCCCEEEEEecCCCcEEEEECCCCc------EEEEecC-CC
Confidence            999999999999  667788888899999999997    7888775 55589999999998765      3555554 45


Q ss_pred             ceeEEEEeecCCeEEEEEe--------CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784          260 PIKLMSVAGHKSFLLVTIS--------KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID  331 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s--------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  331 (501)
                      .+.+++|+| +++.+++++        .|+.|++||+.+++...                                    
T Consensus       255 ~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~------------------------------------  297 (433)
T 3bws_A          255 LPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLID------------------------------------  297 (433)
T ss_dssp             EEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE------------------------------------
T ss_pred             CceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEe------------------------------------
Confidence            589999998 666777777        48899999988764311                                    


Q ss_pred             cCCCceEeeeccCCCcEEEEEEcCCCcE-EEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE
Q 010784          332 LRTMQKVMTPAICKPILHSFSIMPSKSL-ICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG  408 (501)
Q Consensus       332 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~  408 (501)
                              .+ .|...+.+++|+|+++. +++++.++ |++||+.+++..      ..+. +...+.+++|+|+ +++++
T Consensus       298 --------~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~------~~~~-~~~~~~~~~~s~dg~~l~~  361 (433)
T 3bws_A          298 --------TI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ------KSIP-VFDKPNTIALSPDGKYLYV  361 (433)
T ss_dssp             --------EE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE------EEEE-CSSSEEEEEECTTSSEEEE
T ss_pred             --------ec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE------EEec-CCCCCCeEEEcCCCCEEEE
Confidence                    11 23456788999999964 56667777 999999976543      4444 5678999999999 65555


Q ss_pred             ecC---------------CCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          409 GRD---------------DLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       409 gs~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ++.               ||.|++||+.+++.+..+..      ...+..++|+|+|++|++++. .++.|++|+++
T Consensus       362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~-~d~~i~v~~~~  431 (433)
T 3bws_A          362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA------GNQPTGLDVSPDNRYLVISDF-LDHQIRVYRRD  431 (433)
T ss_dssp             EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSCEEEEEET-TTTEEEEEEET
T ss_pred             EecCCCccccccccccccceEEEEEECCCCcEEEEecC------CCCCceEEEcCCCCEEEEEEC-CCCeEEEEEec
Confidence            444               57999999999998888842      346899999999999998874 37999999986

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.8e-30  Score=237.50  Aligned_cols=234  Identities=9%  Similarity=0.031  Sum_probs=177.4

Q ss_pred             cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc---cccccce
Q 010784          177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK---RGQQALK  251 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~  251 (501)
                      ++++|++|+.||+|++||  .++.+..+.  ...|.++.|+    +.   +++|+.|++|++|+......   ......+
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~----~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEH----PA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCC----CS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeC----Cc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            789999999999999999  666666665  5677888886    44   99999999999998763210   0000112


Q ss_pred             ee-ccCCCCceeEEEEeec-CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784          252 AT-LYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT  329 (501)
Q Consensus       252 ~~-~~~~~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  329 (501)
                      .. ..+|..+|.+++++|. ++.++++++.||.|++||+++++..                                   
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-----------------------------------  162 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY-----------------------------------  162 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE-----------------------------------
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE-----------------------------------
Confidence            22 3367789999999972 5679999999999999999887531                                   


Q ss_pred             EEcCCCceEeee-ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC-cccCeEEEEecCC-eE
Q 010784          330 IDLRTMQKVMTP-AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG-HVGSVTQLHMDPY-KI  405 (501)
Q Consensus       330 ~d~~~~~~~~~~-~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~-~~  405 (501)
                               ... ..+...+.+++|+|++.+|++|+.|+ |++||+++++..     ...+.. |.+.|++++|+|+ .+
T Consensus       163 ---------~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-----~~~~~~~h~~~v~~l~fs~~g~~  228 (343)
T 3lrv_A          163 ---------IVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA-----SSRFPVDEEAKIKEVKFADNGYW  228 (343)
T ss_dssp             ---------EEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-----CEECCCCTTSCEEEEEECTTSSE
T ss_pred             ---------EEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-----ccEEeccCCCCEEEEEEeCCCCE
Confidence                     111 22456799999999999999999988 999999987542     256677 9999999999999 88


Q ss_pred             EEEecCCCcEEEEeCCCcccccccccCCCCCCCccee--eeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          406 VTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG--CSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       406 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      +++++ |+.|++||+++++.+..+....  .|...+.  +++|+|+|++|++++. +++.|++|++...
T Consensus       229 l~s~~-~~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~s~-~d~~i~v~~~~~~  293 (343)
T 3lrv_A          229 MVVEC-DQTVVCFDLRKDVGTLAYPTYT--IPEFKTGTVTYDIDDSGKNMIAYSN-ESNSLTIYKFDKK  293 (343)
T ss_dssp             EEEEE-SSBEEEEETTSSTTCBSSCCCB--C-----CCEEEEECTTSSEEEEEET-TTTEEEEEEECTT
T ss_pred             EEEEe-CCeEEEEEcCCCCcceeecccc--cccccccceEEEECCCCCEEEEecC-CCCcEEEEEEccc
Confidence            88887 5599999999988877664211  1233343  6999999999999884 2699999988543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.9e-28  Score=233.08  Aligned_cols=270  Identities=14%  Similarity=0.110  Sum_probs=209.9

Q ss_pred             cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE-EEeeCCCceEEec--CCce
Q 010784          122 DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL-VTSSCDHSIRLWW--KGSC  198 (501)
Q Consensus       122 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vwd--~~~~  198 (501)
                      +.++++++.++.|++||+.++ +.+..+.+|.. +.+++|+|             +++++ ++++.|++|++||  +++.
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~-~~~~~~~~~~~-~~~~~~s~-------------dg~~l~~~~~~d~~i~v~d~~~~~~   66 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSN-KVTATIPVGSN-PMGAVISP-------------DGTKVYVANAHSNDVSIIDTATNNV   66 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTT-EEEEEEECSSS-EEEEEECT-------------TSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred             CEEEEEcCCCCEEEEEECCCC-eEEEEeecCCC-cceEEECC-------------CCCEEEEECCCCCeEEEEECCCCeE
Confidence            467889999999999999985 77778877754 89999999             77765 7788999999999  6777


Q ss_pred             eeeccCCCCceEEEEeeecCCCCCCEEE-EeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEE
Q 010784          199 QRCFKGHNGPVSTLSDKLLGDGSGKILA-SGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTI  277 (501)
Q Consensus       199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~  277 (501)
                      +..+..+. .+.+++|+    +++++|+ +++.++.|++||+.+++.      ...+.. ...+.+++|+|++..+++++
T Consensus        67 ~~~~~~~~-~v~~~~~s----pdg~~l~~~~~~~~~v~v~d~~~~~~------~~~~~~-~~~~~~~~~s~dg~~l~~~~  134 (391)
T 1l0q_A           67 IATVPAGS-SPQGVAVS----PDGKQVYVTNMASSTLSVIDTTSNTV------AGTVKT-GKSPLGLALSPDGKKLYVTN  134 (391)
T ss_dssp             EEEEECSS-SEEEEEEC----TTSSEEEEEETTTTEEEEEETTTTEE------EEEEEC-SSSEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCC-CccceEEC----CCCCEEEEEECCCCEEEEEECCCCeE------EEEEeC-CCCcceEEECCCCCEEEEEe
Confidence            77776555 89999997    7888775 555679999999998763      445543 45689999998444444788


Q ss_pred             eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe--EEEEeC--CcEEEEEcCCCceEeeeccCCCcEEEEEE
Q 010784          278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIASG--SSVVTIDLRTMQKVMTPAICKPILHSFSI  353 (501)
Q Consensus       278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~v~~v~~  353 (501)
                      +.++.|++||+.+++.....      .....+..+.++++.  ++++..  +.+.+||+++++.+..+. +...+.+++|
T Consensus       135 ~~~~~v~~~d~~~~~~~~~~------~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~  207 (391)
T 1l0q_A          135 NGDKTVSVINTVTKAVINTV------SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAV  207 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEE------ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEE------ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEE
Confidence            88999999999988654332      223445566666554  444433  479999999998877766 4668899999


Q ss_pred             cCCCcEEEEEc---CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecCCCcEEEEeCCCccccc
Q 010784          354 MPSKSLICTGG---IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRDDLRINIWETDTGMLAN  427 (501)
Q Consensus       354 ~~~~~~l~~~~---~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~dg~i~iwd~~~~~~~~  427 (501)
                      +|+++++++++   .++ |++||+.+++..      ..+..|. .+.+++|+|+ + ++++++.|+.|++||+.+++.+.
T Consensus       208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~------~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~  280 (391)
T 1l0q_A          208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKIT------ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA  280 (391)
T ss_dssp             CTTSSEEEEEEECSSCCEEEEEETTTTEEE------EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCCCEEEEEecCcCCCcEEEEECCCCeEE------EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence            99999888887   466 999999986543      5666554 5789999999 4 55787899999999999999888


Q ss_pred             ccccC
Q 010784          428 SLLCN  432 (501)
Q Consensus       428 ~~~~~  432 (501)
                      .+..+
T Consensus       281 ~~~~~  285 (391)
T 1l0q_A          281 TMAVG  285 (391)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            87544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=9.6e-30  Score=241.51  Aligned_cols=268  Identities=7%  Similarity=0.007  Sum_probs=181.6

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEeccccc----ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSES----YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~----~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      .....+++++.++|+|+.|++|++||..++.    ..+..+.||.+.|++++|+|.     .......++++|+||+.|+
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~-----~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADV-----YSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEE-----ECTTCSEEEEEEEEEETTS
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccc-----cccccCCCCCEEEEEECCC
Confidence            4455666788999999999999999988752    234568999999999999972     1111223789999999999


Q ss_pred             ceEEec--CCceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCcccc------------------
Q 010784          189 SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQ------------------  247 (501)
Q Consensus       189 ~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~------------------  247 (501)
                      +|+|||  .+..+..+..|..+|.+++|+    |++ .+|++|+.||+|++||+.++.....                  
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~----p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~  242 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSSPGISVQFR----PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL  242 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCEEEEEEE----TTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred             eEEEEECCCCceeeeecCCCCCcEEEEEC----CCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence            999999  667777778899999999998    555 5899999999999999987653110                  


Q ss_pred             -ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784          248 -QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS  326 (501)
Q Consensus       248 -~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (501)
                       ........+|...|.++.|.+.++..+++++.|+.+++||+..++......     ............+          
T Consensus       243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~-----~~~~~~~~~~~~~----------  307 (393)
T 4gq1_A          243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS-----DSTMKLGPKNLLP----------  307 (393)
T ss_dssp             GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------CCSC----------
T ss_pred             cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe-----eecCccccEEEcc----------
Confidence             001112356888999999986689999999999999999998875432211     0111111111111          


Q ss_pred             EEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784          327 VVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-  403 (501)
Q Consensus       327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-  403 (501)
                                .......+...+..+.+.+ ++.++++|+.|+ |++||+.+++..      ..+.+|..+|++++|+|+ 
T Consensus       308 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~------~~~~~~~~~V~svafspdG  371 (393)
T 4gq1_A          308 ----------NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN------SIPIQLGMPIVDFCWHQDG  371 (393)
T ss_dssp             ----------SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC------EEEEECSSCEEEEEECTTS
T ss_pred             ----------ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE------EEecCCCCcEEEEEEcCCC
Confidence                      1122222223333333333 456777888888 999999987654      667788899999999999 


Q ss_pred             eEEEEecCCCcEEEEeCC
Q 010784          404 KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       404 ~~l~~gs~dg~i~iwd~~  421 (501)
                      ++||+++.+| +.+|.+.
T Consensus       372 ~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          372 SHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             SEEEEEESSE-EEEEEEG
T ss_pred             CEEEEEeCCC-eEEEEEe
Confidence            9999986655 6666653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=2.3e-28  Score=235.78  Aligned_cols=283  Identities=12%  Similarity=0.090  Sum_probs=214.5

Q ss_pred             cCCeeeEEEEeccc--c-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceee--
Q 010784          128 GSSIQNIKIDNFLS--E-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQR--  200 (501)
Q Consensus       128 g~~d~~i~vw~~~~--~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~--  200 (501)
                      ++.++.+.+|.+..  + .+.+..+..+ ..+.+++|+|             ++.++++++.++.|++||  +++.+.  
T Consensus        95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~-------------~~~~~~~~~~~~~i~~~d~~~g~~~~~~  160 (433)
T 3bws_A           95 KPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFID-------------NTRLAIPLLEDEGMDVLDINSGQTVRLS  160 (433)
T ss_dssp             SGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESS-------------SSEEEEEBTTSSSEEEEETTTCCEEEEC
T ss_pred             ccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeC-------------CCeEEEEeCCCCeEEEEECCCCeEeeec
Confidence            44455344554432  2 1344445444 3466889988             788999999999999999  566655  


Q ss_pred             ---eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEE
Q 010784          201 ---CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTI  277 (501)
Q Consensus       201 ---~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~  277 (501)
                         .+.+|...|.+++|+    +++.++++++.|+.|++||+.++.      ....+..|...+.+++|+|++..+++++
T Consensus       161 ~~~~~~~~~~~v~~~~~~----~~~~~~~s~~~d~~v~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~  230 (433)
T 3bws_A          161 PPEKYKKKLGFVETISIP----EHNELWVSQMQANAVHVFDLKTLA------YKATVDLTGKWSKILLYDPIRDLVYCSN  230 (433)
T ss_dssp             CCHHHHTTCCEEEEEEEG----GGTEEEEEEGGGTEEEEEETTTCC------EEEEEECSSSSEEEEEEETTTTEEEEEE
T ss_pred             CcccccccCCceeEEEEc----CCCEEEEEECCCCEEEEEECCCce------EEEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence               456899999999996    788999999999999999998876      4677778899999999998544444666


Q ss_pred             eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784          278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK  357 (501)
Q Consensus       278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~  357 (501)
                      +.|+.|++||+++++.+                                            ..+. +...+.+++|+|++
T Consensus       231 ~~~~~i~~~d~~~~~~~--------------------------------------------~~~~-~~~~~~~~~~~~~g  265 (433)
T 3bws_A          231 WISEDISVIDRKTKLEI--------------------------------------------RKTD-KIGLPRGLLLSKDG  265 (433)
T ss_dssp             TTTTEEEEEETTTTEEE--------------------------------------------EECC-CCSEEEEEEECTTS
T ss_pred             cCCCcEEEEECCCCcEE--------------------------------------------EEec-CCCCceEEEEcCCC
Confidence            68999999999876432                                            1222 23458899999999


Q ss_pred             cEEEEEc--------CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccc
Q 010784          358 SLICTGG--------IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLA  426 (501)
Q Consensus       358 ~~l~~~~--------~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~  426 (501)
                      +++++++        .++ |++||+.+++..      .. ..|...+.+++|+|+  .++++++.|+.|++||+.+++.+
T Consensus       266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~------~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~  338 (433)
T 3bws_A          266 KELYIAQFSASNQESGGGRLGIYSMDKEKLI------DT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ  338 (433)
T ss_dssp             SEEEEEEEESCTTCSCCEEEEEEETTTTEEE------EE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCccccCCCeEEEEECCCCcEE------ee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence            9988887        467 999999986543      33 346678999999998  57788789999999999999888


Q ss_pred             cccccCCCCCCCcceeeeEeeccccEEEEeecCC-------------CceEEEeeccC--------------------Cc
Q 010784          427 NSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE-------------PGLLQFRDFSN--------------------AT  473 (501)
Q Consensus       427 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~-------------~g~i~~w~~~~--------------------~~  473 (501)
                      ..+.      +...+..++|+|+|++|++++.+.             ||.|++||...                    ++
T Consensus       339 ~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg  412 (433)
T 3bws_A          339 KSIP------VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDN  412 (433)
T ss_dssp             EEEE------CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred             EEec------CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCC
Confidence            7773      356788999999999999887532             57999999643                    33


Q ss_pred             cceee-cCCCCceeeecccC
Q 010784          474 CPVLK-HEVQNDSKFWGPQC  492 (501)
Q Consensus       474 ~~~~s-~~~d~~~~~w~~~~  492 (501)
                      ..+++ ++.|+.+++|+++.
T Consensus       413 ~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          413 RYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CEEEEEETTTTEEEEEEETT
T ss_pred             CEEEEEECCCCeEEEEEecC
Confidence            34444 44589999998763

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-28  Score=238.24  Aligned_cols=243  Identities=10%  Similarity=0.040  Sum_probs=195.5

Q ss_pred             cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc---eeeecc-------------------------
Q 010784          154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS---CQRCFK-------------------------  203 (501)
Q Consensus       154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~---~~~~~~-------------------------  203 (501)
                      .++.+++|++             +|++|+++ .++.|++||  +++   .+..+.                         
T Consensus         5 ~p~~~v~~s~-------------dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (450)
T 2vdu_B            5 HPLQNLLTSR-------------DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENE   70 (450)
T ss_dssp             CCCCEEEECS-------------SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------
T ss_pred             ccEEEEEecC-------------CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccc
Confidence            5788899998             78866655 588999999  666   444443                         


Q ss_pred             -----------------------------CCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEecc--CCCccccccce
Q 010784          204 -----------------------------GHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLS--SSGKRGQQALK  251 (501)
Q Consensus       204 -----------------------------~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~--~~~~~~~~~~~  251 (501)
                                                   .|.+.|.+++|+    +++++| ++|+.||.|++||+.  ++.      ..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~d~~~l~~~~~~dg~v~iwd~~~~~~~------~~  140 (450)
T 2vdu_B           71 NENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT----SDESRLIACADSDKSLLVFDVDKTSKN------VL  140 (450)
T ss_dssp             -----------------------------CCCCCEEEEEEC----TTSSEEEEEEGGGTEEEEEEECSSSSS------CE
T ss_pred             ccccccccCcCccccccCccccCCCCCCCccCCceEEEEEc----CCCCEEEEEECCCCeEEEEECcCCCCc------ee
Confidence                                         234479999997    889986 899999999999998  655      35


Q ss_pred             eecc--CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784          252 ATLY--GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT  329 (501)
Q Consensus       252 ~~~~--~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  329 (501)
                      ..+.  .|...|.+++|+| ++.+|++|+.+|.|++|++.+++....                                 
T Consensus       141 ~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~---------------------------------  186 (450)
T 2vdu_B          141 KLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKF---------------------------------  186 (450)
T ss_dssp             EEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCCCSSC---------------------------------
T ss_pred             eeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecCCcccccc---------------------------------
Confidence            5554  5778999999998 788999999999999999987643210                                 


Q ss_pred             EEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCCc-EEEEecCCCCCCCCCCCccc-ccCcccCeEEEEecCC-
Q 010784          330 IDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE-LDGHVGSVTQLHMDPY-  403 (501)
Q Consensus       330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~-  403 (501)
                             ....+.+|...|.+++|+|+   +++|++|+.|+ |++||+++++..      .. +.+|...|++++|+ + 
T Consensus       187 -------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~------~~~~~~h~~~v~~~~~s-d~  252 (450)
T 2vdu_B          187 -------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV------DKWLFGHKHFVSSICCG-KD  252 (450)
T ss_dssp             -------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE------EEECCCCSSCEEEEEEC-ST
T ss_pred             -------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee------eeeecCCCCceEEEEEC-CC
Confidence                   11245568899999999999   99999999988 999999987643      55 56899999999999 8 


Q ss_pred             eEEEEecCCCcEEEEeCCCcccccccccCC--------------------CCCCCcceeeeEeeccccEEEEeecCCCce
Q 010784          404 KIVTGGRDDLRINIWETDTGMLANSLLCNY--------------------PEEADISTGCSAMAVSGCRIVTASYGEPGL  463 (501)
Q Consensus       404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~  463 (501)
                      .++++|+.|+.|++||+.+++++..+..+.                    .......+..++|+|++++|++++. .++.
T Consensus       253 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-~d~~  331 (450)
T 2vdu_B          253 YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE-ATKC  331 (450)
T ss_dssp             TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET-TCSE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC-CCCe
Confidence            888899999999999999999887774221                    0023457899999999999999984 4699


Q ss_pred             EEEeec
Q 010784          464 LQFRDF  469 (501)
Q Consensus       464 i~~w~~  469 (501)
                      |++|++
T Consensus       332 i~iw~~  337 (450)
T 2vdu_B          332 IIILEM  337 (450)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999999

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=2.8e-27  Score=232.56  Aligned_cols=345  Identities=12%  Similarity=0.042  Sum_probs=253.7

Q ss_pred             EEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC
Q 010784          116 ILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK  195 (501)
Q Consensus       116 ~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~  195 (501)
                      .++++++.++++++.++.|.+||..++ +++.++..+.. +..++|+|             +|++|++++.|++|++||.
T Consensus       143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~-~~~~~i~~g~~-~~~v~~sp-------------dg~~l~v~~~d~~V~v~D~  207 (543)
T 1nir_A          143 NDLDLPNLFSVTLRDAGQIALVDGDSK-KIVKVIDTGYA-VHISRMSA-------------SGRYLLVIGRDARIDMIDL  207 (543)
T ss_dssp             SCCCGGGEEEEEEGGGTEEEEEETTTC-CEEEEEECSTT-EEEEEECT-------------TSCEEEEEETTSEEEEEET
T ss_pred             cccCCCCEEEEEEcCCCeEEEEECCCc-eEEEEEecCcc-cceEEECC-------------CCCEEEEECCCCeEEEEEC
Confidence            358999999999999999999999985 77788874333 88999999             8999999999999999994


Q ss_pred             ----CceeeeccCCCCceEEEEeeecCCC----CCCEEEEeeC-CCcEEEEeccCCCccccccceeeccC----------
Q 010784          196 ----GSCQRCFKGHNGPVSTLSDKLLGDG----SGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYG----------  256 (501)
Q Consensus       196 ----~~~~~~~~~h~~~v~~l~~s~~~~~----~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~----------  256 (501)
                          ++.+..+. +...+..++|+    +    +|+++++++. +++|.+||..+.+.      +..+..          
T Consensus       208 ~~~t~~~~~~i~-~g~~p~~va~s----p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~------~~~i~~~g~~~~~~~~  276 (543)
T 1nir_A          208 WAKEPTKVAEIK-IGIEARSVESS----KFKGYEDRYTIAGAYWPPQFAIMDGETLEP------KQIVSTRGMTVDTQTY  276 (543)
T ss_dssp             TSSSCEEEEEEE-CCSEEEEEEEC----CSTTCTTTEEEEEEEESSEEEEEETTTCCE------EEEEECCEECSSSCCE
T ss_pred             cCCCCcEEEEEe-cCCCcceEEeC----CCcCCCCCEEEEEEccCCeEEEEecccccc------ceeecccCcccCcccc
Confidence                45566666 45567999997    7    9999999884 89999999988763      444432          


Q ss_pred             C-CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE--EEEe--CCcEEEEE
Q 010784          257 H-EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML--YIAS--GSSVVTID  331 (501)
Q Consensus       257 ~-~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~i~~~d  331 (501)
                      | ...+..+.+++.+..++++...++.|.+||+.+.+.+..    ........+..+.++++..  +++.  ++.|.+||
T Consensus       277 ~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~----~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          277 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV----TSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE----EEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee----EEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence            2 236889999987778888889999999999988754321    1122344555666666543  3443  24899999


Q ss_pred             cCCCceEeeecc----CCCcEEEEEEcCC-CcEEEEEc-CCc-EEEEecCCCCC-CCCCCCcccccCcccCeEEEEecCC
Q 010784          332 LRTMQKVMTPAI----CKPILHSFSIMPS-KSLICTGG-IGK-AMTWDIRRSQD-AVKPQPMAELDGHVGSVTQLHMDPY  403 (501)
Q Consensus       332 ~~~~~~~~~~~~----~~~~v~~v~~~~~-~~~l~~~~-~d~-i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~  403 (501)
                      +.+++.+..+..    |.+....+ ++|+ +.+++++. .++ |.+||+.+... ....+.++++.+|.+.+..++++|+
T Consensus       353 ~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pd  431 (543)
T 1nir_A          353 SKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK  431 (543)
T ss_dssp             TTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred             CCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCC
Confidence            999998887764    54444343 4677 77777775 456 99999987211 0113456889999888999999999


Q ss_pred             -eEEEEec-------CCCcEEEEeCCCcccc-cccccCC---CCCCCcceeeeEeeccccEEEEeec---CCCceEEEee
Q 010784          404 -KIVTGGR-------DDLRINIWETDTGMLA-NSLLCNY---PEEADISTGCSAMAVSGCRIVTASY---GEPGLLQFRD  468 (501)
Q Consensus       404 -~~l~~gs-------~dg~i~iwd~~~~~~~-~~~~~~~---~~~~~~~v~~~~~s~~g~~l~s~~~---d~~g~i~~w~  468 (501)
                       +.|.+++       .+++|.+||+.+++.. ..+....   ...+...+..+.|+|+|+.++++..   +.++.|.|||
T Consensus       432 g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          432 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             CCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred             CCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence             7777765       2779999999998877 3332110   0234678899999999999987643   2579999999


Q ss_pred             ccCCcccee-----ecCCCCceeeeccc
Q 010784          469 FSNATCPVL-----KHEVQNDSKFWGPQ  491 (501)
Q Consensus       469 ~~~~~~~~~-----s~~~d~~~~~w~~~  491 (501)
                      ..+++....     ...-+|...+||-+
T Consensus       512 ~~t~~~~~~i~~~~~~~p~g~~~~~~~~  539 (543)
T 1nir_A          512 DKTLKLKAVVKDPRLITPTGKFNVYNTQ  539 (543)
T ss_dssp             TTTTEEEEEECCTTCCSEEEEEEHHHHH
T ss_pred             CCCceEEEeecCCCccCCCeeeeccccc
Confidence            988765322     12335666666543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.1e-26  Score=220.96  Aligned_cols=261  Identities=11%  Similarity=0.083  Sum_probs=199.9

Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeec
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      +.++++++.|+.|++||  +++.+..+..|. .+.+++|+    ++++++ ++++.|+.|++||+.+++      ....+
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s----~dg~~l~~~~~~d~~i~v~d~~~~~------~~~~~   70 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVIS----PDGTKVYVANAHSNDVSIIDTATNN------VIATV   70 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEEC----TTSSEEEEEEGGGTEEEEEETTTTE------EEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEEC----CCCCEEEEECCCCCeEEEEECCCCe------EEEEE
Confidence            35788999999999999  677778887665 48999997    788876 677799999999998876      35555


Q ss_pred             cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe--EEEEeC--CcEEEE
Q 010784          255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIASG--SSVVTI  330 (501)
Q Consensus       255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~i~~~  330 (501)
                      ..+. .+.+++|+|++..++++++.++.|++||+.+++.+...      .....+..+.++++.  ++++..  +.+.+|
T Consensus        71 ~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  143 (391)
T 1l0q_A           71 PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVI  143 (391)
T ss_dssp             ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE------eCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence            5444 89999999844444466667899999999988654332      234456667776653  434443  489999


Q ss_pred             EcCCCceEeeeccCCCcEEEEEEcCCCcEE-EEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE
Q 010784          331 DLRTMQKVMTPAICKPILHSFSIMPSKSLI-CTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT  407 (501)
Q Consensus       331 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~  407 (501)
                      |+.+++.+..+..+ ..+.+++|+|+++++ ++++.++ |++||+++++..      ..+. +...+.+++|+|+ +.++
T Consensus       144 d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~------~~~~-~~~~~~~~~~~~~g~~l~  215 (391)
T 1l0q_A          144 NTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI------DTVK-VEAAPSGIAVNPEGTKAY  215 (391)
T ss_dssp             ETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE------EEEE-CSSEEEEEEECTTSSEEE
T ss_pred             ECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE------EEEe-cCCCccceEECCCCCEEE
Confidence            99999988887765 456999999999877 5667777 999999986543      4443 4567899999999 5555


Q ss_pred             Eec---CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEE-EeecCCCceEEEeeccCC
Q 010784          408 GGR---DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIV-TASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       408 ~gs---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-s~~~d~~g~i~~w~~~~~  472 (501)
                      +++   .++.|++||+.+++.+..+..     + ..+.+++|+|+|++|+ +++  .++.|++||+..+
T Consensus       216 ~~~~~~~~~~v~~~d~~~~~~~~~~~~-----~-~~~~~~~~s~dg~~l~~s~~--~d~~v~v~d~~~~  276 (391)
T 1l0q_A          216 VTNVDKYFNTVSMIDTGTNKITARIPV-----G-PDPAGIAVTPDGKKVYVALS--FXNTVSVIDTATN  276 (391)
T ss_dssp             EEEECSSCCEEEEEETTTTEEEEEEEC-----C-SSEEEEEECTTSSEEEEEET--TTTEEEEEETTTT
T ss_pred             EEecCcCCCcEEEEECCCCeEEEEEec-----C-CCccEEEEccCCCEEEEEcC--CCCEEEEEECCCC
Confidence            555   689999999999988888742     2 3478899999999885 555  6799999997643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1.1e-26  Score=207.18  Aligned_cols=184  Identities=12%  Similarity=0.053  Sum_probs=132.5

Q ss_pred             cCcEEEEee--CCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce
Q 010784          177 TENVLVTSS--CDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK  251 (501)
Q Consensus       177 ~~~~l~s~~--~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  251 (501)
                      +++++.+++  .|+.|++|+   .++.+..+.+|...++.++|++.+ .++.+|++|+.|++|++||+.+++      ++
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~-g~~~~LaSgS~D~TIkIWDl~TGk------~l  216 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ-GMQEALLGTTIMNNIVIWNLKTGQ------LL  216 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE-TSTTEEEEEETTSEEEEEETTTCC------EE
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC-CCCceEEEecCCCcEEEEECCCCc------EE
Confidence            344444422  466666665   355556667899999999998322 377999999999999999999987      47


Q ss_pred             eeccCCC---CceeEEEEeecCCeEEEE------------EeCCCeEEEEECCCCccccceecccceecCCCceeeecCC
Q 010784          252 ATLYGHE---KPIKLMSVAGHKSFLLVT------------ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE  316 (501)
Q Consensus       252 ~~~~~~~---~~v~~l~~~~~~~~~l~s------------~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (501)
                      .++.+|.   ..+.+++|+| ++.++++            |+.|++|++||..+++                        
T Consensus       217 ~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk------------------------  271 (356)
T 2w18_A          217 KKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL------------------------  271 (356)
T ss_dssp             EEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTE------------------------
T ss_pred             EEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE------------------------
Confidence            7777654   3677789998 6777644            5556666666665553                        


Q ss_pred             CeEEEEeCCcEEEEEcCCCceEeee-----ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC
Q 010784          317 SMLYIASGSSVVTIDLRTMQKVMTP-----AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG  390 (501)
Q Consensus       317 ~~~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~  390 (501)
                                          .+..+     .+|...+.+..++  +.++++|+.|+ |+|||+.+++.+      .++.+
T Consensus       272 --------------------~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l------~tL~g  323 (356)
T 2w18_A          272 --------------------SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCT------ALLPP  323 (356)
T ss_dssp             --------------------EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEE------EEECC
T ss_pred             --------------------EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEE------EEecC
Confidence                                33222     2455555544443  88999999888 999999997765      88999


Q ss_pred             cccCeE-EEEecCC-eEEEEecCCCcEEEEeC
Q 010784          391 HVGSVT-QLHMDPY-KIVTGGRDDLRINIWET  420 (501)
Q Consensus       391 h~~~v~-~l~~~~~-~~l~~gs~dg~i~iwd~  420 (501)
                      |...+. +++|+|+ ++|++|+.|++|+|||+
T Consensus       324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            987655 5899999 99999999999999995

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=7.4e-26  Score=215.96  Aligned_cols=295  Identities=10%  Similarity=-0.003  Sum_probs=211.9

Q ss_pred             CCceEEeeCCcE-EEeecCC----ee----eEEEEec--ccccccc--eecccCCcceeEEEeeccCcC-cccccCCCCc
Q 010784          112 PHDHILLDNNDI-FSTQGSS----IQ----NIKIDNF--LSESYYR--ATLSDHKARITCMRLFPLHET-SLFRSEPQRT  177 (501)
Q Consensus       112 ~i~~~~~~~~~~-~~~~g~~----d~----~i~vw~~--~~~~~~~--~~~~~h~~~V~~~~~~~~~~~-~~~~~~~~~~  177 (501)
                      .++...|.+.|. ++++|+.    +|    .+++||+  .++ +.+  ..+.+|...+..+++++.... ........+.
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG-TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT-CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC-CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            466777776664 5556652    45    8999999  775 444  568899999988887641000 0000000012


Q ss_pred             CcEEEEeeCC------CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC---cEEEEeccCCCcccc
Q 010784          178 ENVLVTSSCD------HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA---TVRLWSLSSSGKRGQ  247 (501)
Q Consensus       178 ~~~l~s~~~d------g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~  247 (501)
                      +..++.++.+      +.|++|| .+.....+..|...|.+++|+    |+|+.|++++.++   .|++||+.+++.   
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~S----pdg~~la~~s~~~~~~~i~~~d~~tg~~---  215 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWS----PDGSKLAYVTFESGRSALVIQTLANGAV---  215 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEEC----TTSSEEEEEECTTSSCEEEEEETTTCCE---
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEc----CCCCEEEEEEecCCCcEEEEEECCCCcE---
Confidence            5667666654      7999999 667778888899999999997    8999999999875   999999998753   


Q ss_pred             ccceeeccCCCCceeEEEEeecCCeEEE-EEeCCCe--EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784          248 QALKATLYGHEKPIKLMSVAGHKSFLLV-TISKDSK--VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       248 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~-s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (501)
                          ..+..|...+.+++|+| +++.|+ +++.++.  |++||+.+++.                               
T Consensus       216 ----~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~-------------------------------  259 (415)
T 2hqs_A          216 ----RQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI-------------------------------  259 (415)
T ss_dssp             ----EEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-------------------------------
T ss_pred             ----EEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE-------------------------------
Confidence                45667888999999998 566555 7766654  88888877632                               


Q ss_pred             CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC-Cc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEe
Q 010784          325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI-GK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM  400 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  400 (501)
                                    ..+..|...+.+++|+|+|++|+.++. ++   |++||+.+++.       ..+..+...+.+++|
T Consensus       260 --------------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-------~~l~~~~~~~~~~~~  318 (415)
T 2hqs_A          260 --------------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-------QRITWEGSQNQDADV  318 (415)
T ss_dssp             --------------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-------EECCCSSSEEEEEEE
T ss_pred             --------------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-------EEEecCCCcccCeEE
Confidence                          233456778999999999998888774 33   77778887642       344556678899999


Q ss_pred             cCC-eEEEEecCC---CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc--eEEEeeccCCcc
Q 010784          401 DPY-KIVTGGRDD---LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG--LLQFRDFSNATC  474 (501)
Q Consensus       401 ~~~-~~l~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g--~i~~w~~~~~~~  474 (501)
                      +|+ ++|+.++.+   +.|++||+.+++.. .+.     .+. .+..++|+|||++|++++.+ ++  .|++||+.....
T Consensus       319 spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~-----~~~-~~~~~~~spdg~~l~~~s~~-~~~~~l~~~d~~g~~~  390 (415)
T 2hqs_A          319 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS-----STF-LDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGRFK  390 (415)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC-----CSS-SCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSCCE
T ss_pred             CCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec-----CCC-CcCCeEEcCCCCEEEEEEcC-CCccEEEEEECCCCcE
Confidence            999 666655543   58999999988764 342     222 78899999999999998853 22  799999875554


Q ss_pred             ceeec
Q 010784          475 PVLKH  479 (501)
Q Consensus       475 ~~~s~  479 (501)
                      ...++
T Consensus       391 ~~l~~  395 (415)
T 2hqs_A          391 ARLPA  395 (415)
T ss_dssp             EECCC
T ss_pred             EEeeC
Confidence            44433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=1.2e-24  Score=224.30  Aligned_cols=318  Identities=12%  Similarity=0.022  Sum_probs=226.8

Q ss_pred             CCCCceEEeeCCcEEEeecCC-ee-----eEEEEecccccccceecccCC------------------------cceeEE
Q 010784          110 AKPHDHILLDNNDIFSTQGSS-IQ-----NIKIDNFLSESYYRATLSDHK------------------------ARITCM  159 (501)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~g~~-d~-----~i~vw~~~~~~~~~~~~~~h~------------------------~~V~~~  159 (501)
                      ...+.+++|+|||.++++++. ++     .|.+||+.++ +....+..|.                        ..|.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            345899999999999999887 77     9999999885 5545554443                        237888


Q ss_pred             EeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCc---eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEE
Q 010784          160 RLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS---CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVR  235 (501)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~---~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~  235 (501)
                      +|+|             ||++|++++. +.|++|| .+.   ....+..|...+.+++|+    |+|++|+.++ ++.|+
T Consensus       115 ~~Sp-------------Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S----PDG~~la~~~-~~~i~  175 (741)
T 2ecf_A          115 QWSP-------------DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS----PKGGFVSFIR-GRNLW  175 (741)
T ss_dssp             EECT-------------TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC----TTSSEEEEEE-TTEEE
T ss_pred             EECC-------------CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC----CCCCEEEEEe-CCcEE
Confidence            8888             8999999886 9999999 444   566777888899999997    8999999887 46999


Q ss_pred             EEeccCCCccccccceeeccCCCCc----------------eeEEEEeecCCeEEEEEeCCC------------------
Q 010784          236 LWSLSSSGKRGQQALKATLYGHEKP----------------IKLMSVAGHKSFLLVTISKDS------------------  281 (501)
Q Consensus       236 iwd~~~~~~~~~~~~~~~~~~~~~~----------------v~~l~~~~~~~~~l~s~s~dg------------------  281 (501)
                      +||+.++..      ......+...                +..+.|+| +++.|++++.|+                  
T Consensus       176 ~~d~~~g~~------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~  248 (741)
T 2ecf_A          176 VIDLASGRQ------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDV  248 (741)
T ss_dssp             EEETTTTEE------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred             EEecCCCCE------EEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccc
Confidence            999988652      2323333322                47789998 777888887665                  


Q ss_pred             ---------------eEEEEECCC-CccccceecccceecCCCceeeecCCCe--EEEEeC------CcEEEEEcCCCce
Q 010784          282 ---------------KVRVWDTST-SSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIASG------SSVVTIDLRTMQK  337 (501)
Q Consensus       282 ---------------~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~i~~~d~~~~~~  337 (501)
                                     .|.+||+.+ ++.......   ......+..+.+ +++  ++++..      ..|.+||+.+++.
T Consensus       249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~  324 (741)
T 2ecf_A          249 IEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG---KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ  324 (741)
T ss_dssp             EEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC---SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred             eEeecCCCCCCCCeeEEEEEECCCCCceEEecCC---CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce
Confidence                           788999988 654221100   012233444555 443  333321      2799999999988


Q ss_pred             EeeeccCCC----cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE-EecCC--eEEEEe
Q 010784          338 VMTPAICKP----ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL-HMDPY--KIVTGG  409 (501)
Q Consensus       338 ~~~~~~~~~----~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~--~~l~~g  409 (501)
                      ...+..+..    .+.+++|+|||+++++++.++ ++||.+....     . ...+..|...|..+ .|+|+  .+++++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~-----~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~  398 (741)
T 2ecf_A          325 RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG-----K-AAALTHGNWSVDELLAVDEKAGLAYFRA  398 (741)
T ss_dssp             EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS-----C-EEESCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC-----C-eeeeeecceEEEeEeEEeCCCCEEEEEE
Confidence            776665543    446889999999988888877 7888765321     1 36677777888887 59999  455666


Q ss_pred             cCCC--cEEEEeCCC-cccccccccCCCCCCCcceeeeEeeccccEEEEeecCC--CceEEEeecc
Q 010784          410 RDDL--RINIWETDT-GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE--PGLLQFRDFS  470 (501)
Q Consensus       410 s~dg--~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~--~g~i~~w~~~  470 (501)
                      +.++  .++||++.. +.....+.     . ...+..++|+|||++|+....+.  ...+.+++..
T Consensus       399 ~~~~~~~~~l~~~~~~g~~~~~l~-----~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          399 GIESARESQIYAVPLQGGQPQRLS-----K-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             CSSCTTCBEEEEEETTCCCCEECC-----C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             eCCCCceEEEEEEEcCCCCeeecc-----c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence            6666  899999864 55556663     1 44577999999999988765321  2467777754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=7.4e-23  Score=218.19  Aligned_cols=330  Identities=9%  Similarity=-0.035  Sum_probs=237.0

Q ss_pred             CeeeEEEecCCCCceEEeeCCcEEEeecCC------eeeEEEEecccccccceecccCCcce-------eEEEeeccCcC
Q 010784          101 PLDVCFYSVAKPHDHILLDNNDIFSTQGSS------IQNIKIDNFLSESYYRATLSDHKARI-------TCMRLFPLHET  167 (501)
Q Consensus       101 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~------d~~i~vw~~~~~~~~~~~~~~h~~~V-------~~~~~~~~~~~  167 (501)
                      .....+..+...+.+++|||||.+||.++.      +..|.+|+..++ + ...+..|...+       ..++|+|    
T Consensus        43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g-~-~~~lt~~~~~~~~~~~~~~~~~~Sp----  116 (1045)
T 1k32_A           43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG-E-IKRITYFSGKSTGRRMFTDVAGFDP----  116 (1045)
T ss_dssp             CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT-E-EEECCCCCEEEETTEECSEEEEECT----
T ss_pred             CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC-C-eEEcccCCCcccccccccccccCCC----
Confidence            334455667777999999999999998754      358999998864 3 67788999988       9999999    


Q ss_pred             cccccCCCCcCcEEEEeeCC----C--ceEEec--CCce-----------------------------------------
Q 010784          168 SLFRSEPQRTENVLVTSSCD----H--SIRLWW--KGSC-----------------------------------------  198 (501)
Q Consensus       168 ~~~~~~~~~~~~~l~s~~~d----g--~i~vwd--~~~~-----------------------------------------  198 (501)
                               ||+++++++.+    +  .|.+|+  .+..                                         
T Consensus       117 ---------Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~l  187 (1045)
T 1k32_A          117 ---------DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKI  187 (1045)
T ss_dssp             ---------TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEE
T ss_pred             ---------CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCE
Confidence                     66766666644    3  355555  2211                                         


Q ss_pred             --------eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784          199 --------QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK  270 (501)
Q Consensus       199 --------~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  270 (501)
                              ...+.+|...+.++.|+    ++ .++++++.|+.+++|.++....     ....+..|. .+...+|+| +
T Consensus       188 w~~~~~~~~~~l~~~~~~v~~~~~s----~d-~l~~~~~~dg~~~l~~~~~~g~-----~~~~l~~~~-~~~~~~~Sp-D  255 (1045)
T 1k32_A          188 WIEVNSGAFKKIVDMSTHVSSPVIV----GH-RIYFITDIDGFGQIYSTDLDGK-----DLRKHTSFT-DYYPRHLNT-D  255 (1045)
T ss_dssp             EEEEETTEEEEEECCSSCCEEEEEE----TT-EEEEEECTTSSCEEEEEETTSC-----SCEECCCCC-SSCEEEEEE-S
T ss_pred             EEECCCCCeEECcCCCCcccceEEe----CC-EEEEEEeccCceEEEEEeCCCC-----cceEecCCC-CcceeeEcC-C
Confidence                    11224567778888886    55 6777888899999998765322     244455554 456779998 6


Q ss_pred             CeEEEEEeCCCeEEEEECCCCccccceecc------cceecCCCceeeecC-CCe--EEEEeCCcEEEEEcCCCceEeee
Q 010784          271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCV------GMTSVPGVPVDMKCH-ESM--LYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~--~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      ++.++++ .++.|.+||+...+.. .....      ........+..+.++ +++  ++++..+.+.+|++..++... +
T Consensus       256 G~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~  332 (1045)
T 1k32_A          256 GRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-V  332 (1045)
T ss_dssp             SSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-C
T ss_pred             CCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-c
Confidence            7777776 4899999998443221 11100      000122345566666 654  455556789999998876543 5


Q ss_pred             ccCCC-cEEEEEEcCCCcEEEEEcCCc-EE-EEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784          342 AICKP-ILHSFSIMPSKSLICTGGIGK-AM-TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       342 ~~~~~-~v~~v~~~~~~~~l~~~~~d~-i~-iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i  417 (501)
                      ..|.. .+..++|+ +|+.++.++++. +. +||+..++.       ..+.+|...+..++|+|+ +.+++++.++.|++
T Consensus       333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~-------~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~  404 (1045)
T 1k32_A          333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA-------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMT  404 (1045)
T ss_dssp             SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE-------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc-------eEecCCccceeeeEECCCCCEEEEECCCCeEEE
Confidence            56677 89999999 999999988877 88 999887543       334477788999999999 88888889999999


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC--------CceEEEeeccCCc
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE--------PGLLQFRDFSNAT  473 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~--------~g~i~~w~~~~~~  473 (501)
                      ||+.+++....+     .+|...+..++|||||++|++++.+.        ++.|++||+..+.
T Consensus       405 ~d~~tg~~~~~~-----~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          405 VDLETGKPTVIE-----RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             EETTTCCEEEEE-----ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             EECCCCceEEec-----cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            999999877666     34667789999999999999887421        2589999976544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=9.3e-23  Score=189.04  Aligned_cols=301  Identities=6%  Similarity=-0.016  Sum_probs=206.4

Q ss_pred             CCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CCceEEec--CC
Q 010784          120 NNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DHSIRLWW--KG  196 (501)
Q Consensus       120 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~vwd--~~  196 (501)
                      ..+..+++++.++.|.+||..++ +....+..+...+ .++|+|             +++++++++. ++.|.+||  ++
T Consensus         8 ~~~~~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~-~~~~s~-------------dg~~l~~~~~~~~~i~~~d~~~~   72 (331)
T 3u4y_A            8 TSNFGIVVEQHLRRISFFSTDTL-EILNQITLGYDFV-DTAITS-------------DCSNVVVTSDFCQTLVQIETQLE   72 (331)
T ss_dssp             CCCEEEEEEGGGTEEEEEETTTC-CEEEEEECCCCEE-EEEECS-------------SSCEEEEEESTTCEEEEEECSSS
T ss_pred             CCCEEEEEecCCCeEEEEeCccc-ceeeeEEccCCcc-eEEEcC-------------CCCEEEEEeCCCCeEEEEECCCC
Confidence            34566788889999999999985 6666666666677 999999             7886665555 89999999  55


Q ss_pred             ce-eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC---cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCe
Q 010784          197 SC-QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA---TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSF  272 (501)
Q Consensus       197 ~~-~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  272 (501)
                      +. ...+..+..+..+++|+    +++++++++..++   .|.+||+.+++.      +..+.. .....+++|+|++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~s----~dg~~l~~~~~~~~~~~i~v~d~~~~~~------~~~~~~-~~~~~~~~~spdg~~  141 (331)
T 3u4y_A           73 PPKVVAIQEGQSSMADVDIT----PDDQFAVTVTGLNHPFNMQSYSFLKNKF------ISTIPI-PYDAVGIAISPNGNG  141 (331)
T ss_dssp             SCEEEEEEECSSCCCCEEEC----TTSSEEEECCCSSSSCEEEEEETTTTEE------EEEEEC-CTTEEEEEECTTSSC
T ss_pred             ceeEEecccCCCCccceEEC----CCCCEEEEecCCCCcccEEEEECCCCCe------EEEEEC-CCCccceEECCCCCE
Confidence            55 66666666666669997    8999999666553   899999988763      444443 344689999984444


Q ss_pred             EEEEEeCCCe-EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEE
Q 010784          273 LLVTISKDSK-VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSF  351 (501)
Q Consensus       273 ~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v  351 (501)
                      ++++...++. |.+|++.....+..                                   ..    ...+ .....+..+
T Consensus       142 l~~~~~~~~~~i~~~~~~~~g~~~~-----------------------------------~~----~~~~-~~~~~~~~~  181 (331)
T 3u4y_A          142 LILIDRSSANTVRRFKIDADGVLFD-----------------------------------TG----QEFI-SGGTRPFNI  181 (331)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCEEE-----------------------------------EE----EEEE-CSSSSEEEE
T ss_pred             EEEEecCCCceEEEEEECCCCcEee-----------------------------------cC----Cccc-cCCCCccce
Confidence            5666666688 99999875422110                                   00    0111 224457899


Q ss_pred             EEcCCCcEEEEE-cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecCCCcEEEEeCCCccc--
Q 010784          352 SIMPSKSLICTG-GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRDDLRINIWETDTGML--  425 (501)
Q Consensus       352 ~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~dg~i~iwd~~~~~~--  425 (501)
                      +|+|+|++++++ ..++ |++||+.+++..   ..+..+.. ...+..++|+|+ + ++++...++.|.+||+.+++.  
T Consensus       182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~---~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~  257 (331)
T 3u4y_A          182 TFTPDGNFAFVANLIGNSIGILETQNPENI---TLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF  257 (331)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEECSSTTSC---EEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCCCccc---ceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee
Confidence            999999865554 4566 999999886641   11245543 366789999999 5 556655688999999998877  


Q ss_pred             ccccccCC--CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcccee-ecCCCCceeeeccc
Q 010784          426 ANSLLCNY--PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL-KHEVQNDSKFWGPQ  491 (501)
Q Consensus       426 ~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~-s~~~d~~~~~w~~~  491 (501)
                      +..+..+.  ..........++|+|||++|++++. .++.|.+||+.......+ .....+.+.++.+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~  325 (331)
T 3u4y_A          258 VKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN-ISRELKVFTISGKVVGYVAGIEANGGIAICHPD  325 (331)
T ss_dssp             EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET-TTTEEEEEETTSCEEEECTTCCCBSCEEECCCC
T ss_pred             ecccccccccCCCCcccccceEECCCCCEEEEecC-CCCcEEEEEecCCcccceecccccCCeEEECCc
Confidence            33332210  0111122356899999999877764 568999999987665444 33445556666554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=5.4e-23  Score=196.13  Aligned_cols=233  Identities=11%  Similarity=0.047  Sum_probs=182.1

Q ss_pred             eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC---ceEEec--CCceeeeccCCC
Q 010784          132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH---SIRLWW--KGSCQRCFKGHN  206 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~vwd--~~~~~~~~~~h~  206 (501)
                      +.|++||...  ...+.+.+|.+.|.+++|+|             +|++|++++.++   .|++||  +++. ..+..|.
T Consensus       159 ~~i~i~d~~g--~~~~~l~~~~~~v~~~~~Sp-------------dg~~la~~s~~~~~~~i~~~d~~tg~~-~~l~~~~  222 (415)
T 2hqs_A          159 YELRVSDYDG--YNQFVVHRSPQPLMSPAWSP-------------DGSKLAYVTFESGRSALVIQTLANGAV-RQVASFP  222 (415)
T ss_dssp             EEEEEEETTS--CSCEEEEEESSCEEEEEECT-------------TSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCS
T ss_pred             ceEEEEcCCC--CCCEEEeCCCCcceeeEEcC-------------CCCEEEEEEecCCCcEEEEEECCCCcE-EEeecCC
Confidence            8999999974  45678889999999999999             899999999885   999999  4444 4567788


Q ss_pred             CceEEEEeeecCCCCCCEEE-EeeCCCc--EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-CC-
Q 010784          207 GPVSTLSDKLLGDGSGKILA-SGGEDAT--VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-DS-  281 (501)
Q Consensus       207 ~~v~~l~~s~~~~~~~~~l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-dg-  281 (501)
                      ..+.+++|+    |+|+.|+ +++.++.  |++||+.++.       ...+..|...+.+++|+| +++.|++++. ++ 
T Consensus       223 ~~~~~~~~s----pdg~~la~~~~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~  290 (415)
T 2hqs_A          223 RHNGAPAFS----PDGSKLAFALSKTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGR  290 (415)
T ss_dssp             SCEEEEEEC----TTSSEEEEEECTTSSCEEEEEETTTCC-------EEECCCCSSCEEEEEECT-TSSEEEEEECTTSS
T ss_pred             CcccCEEEc----CCCCEEEEEEecCCCceEEEEECCCCC-------EEeCcCCCCcccceEECC-CCCEEEEEECCCCC
Confidence            899999997    8999777 6666665  9999998765       356777888999999998 6777777775 44 


Q ss_pred             -eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784          282 -KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI  360 (501)
Q Consensus       282 -~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l  360 (501)
                       .|.+||+.+++.                                             ..+..+...+.+++|+|+|++|
T Consensus       291 ~~i~~~d~~~~~~---------------------------------------------~~l~~~~~~~~~~~~spdG~~l  325 (415)
T 2hqs_A          291 PQVYKVNINGGAP---------------------------------------------QRITWEGSQNQDADVSSDGKFM  325 (415)
T ss_dssp             CEEEEEETTSSCC---------------------------------------------EECCCSSSEEEEEEECTTSSEE
T ss_pred             cEEEEEECCCCCE---------------------------------------------EEEecCCCcccCeEECCCCCEE
Confidence             677778776532                                             1222355678899999999999


Q ss_pred             EEEcCC---c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC---cEEEEeCCCcccccccccC
Q 010784          361 CTGGIG---K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL---RINIWETDTGMLANSLLCN  432 (501)
Q Consensus       361 ~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg---~i~iwd~~~~~~~~~~~~~  432 (501)
                      ++++.+   . |++||+.+++.       ..+..+. .+.+++|+|+ ++++.++.++   .|++||+. +.....+   
T Consensus       326 ~~~~~~~g~~~i~~~d~~~~~~-------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l---  393 (415)
T 2hqs_A          326 VMVSSNGGQQHIAKQDLATGGV-------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL---  393 (415)
T ss_dssp             EEEEECSSCEEEEEEETTTCCE-------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEEC---
T ss_pred             EEEECcCCceEEEEEECCCCCE-------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEe---
Confidence            888743   4 99999998653       3444444 8999999999 7666666666   79999986 5556677   


Q ss_pred             CCCCCCcceeeeEeecccc
Q 010784          433 YPEEADISTGCSAMAVSGC  451 (501)
Q Consensus       433 ~~~~~~~~v~~~~~s~~g~  451 (501)
                        ..|...|..++|+|.-.
T Consensus       394 --~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          394 --PATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             --CCSSSEEEEEEECCCCC
T ss_pred             --eCCCCCCcCCccccccc
Confidence              45678899999999643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=7.4e-23  Score=201.11  Aligned_cols=296  Identities=11%  Similarity=0.064  Sum_probs=212.7

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEec--ccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee-CCC
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNF--LSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS-CDH  188 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~--~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg  188 (501)
                      .+..++++|+|+++++++.++.|.+||+  .++ +.+.++.. ...+..++|+|..         .++|+++++++ .++
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-~~~~~i~~-g~~p~~va~sp~~---------~~dg~~l~v~~~~~~  248 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEP-TKVAEIKI-GIEARSVESSKFK---------GYEDRYTIAGAYWPP  248 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-EEEEEEEC-CSEEEEEEECCST---------TCTTTEEEEEEEESS
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCC-cEEEEEec-CCCcceEEeCCCc---------CCCCCEEEEEEccCC
Confidence            3788999999999999999999999999  664 66777764 4567899998700         00367888877 489


Q ss_pred             ceEEec--CCceeeeccCC-----------CCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccce-ee
Q 010784          189 SIRLWW--KGSCQRCFKGH-----------NGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALK-AT  253 (501)
Q Consensus       189 ~i~vwd--~~~~~~~~~~h-----------~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~  253 (501)
                      +|.|||  +++++..+..+           ...+.++.++    + .+.++++...++.|.+||+.+.+.     +. ..
T Consensus       249 ~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s----~~~~~~~vs~~~~g~i~vvd~~~~~~-----l~~~~  319 (543)
T 1nir_A          249 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS----HEHPEFIVNVKETGKVLLVNYKDIDN-----LTVTS  319 (543)
T ss_dssp             EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC----SSSSEEEEEETTTTEEEEEECTTSSS-----CEEEE
T ss_pred             eEEEEeccccccceeecccCcccCccccccCCceEEEEEC----CCCCEEEEEECCCCeEEEEEecCCCc-----ceeEE
Confidence            999999  67777766542           2368889987    4 445677788899999999987653     11 23


Q ss_pred             ccCCCCceeEEEEeecCCeEEE-EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC-CeEEEEe---CCcEE
Q 010784          254 LYGHEKPIKLMSVAGHKSFLLV-TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE-SMLYIAS---GSSVV  328 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~~~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~i~  328 (501)
                      + .+...+..+.|+| ++++++ ++..+++|.+||..+++.+..... ....+.+....+...+ ..++++.   ++.|.
T Consensus       320 i-~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~-g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~  396 (543)
T 1nir_A          320 I-GAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDV-GKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS  396 (543)
T ss_dssp             E-ECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEEC-SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEE
T ss_pred             e-ccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeecc-CCCCCCCCCcccCCCCCccEEEeccCCCceEE
Confidence            3 3566788899998 666555 555689999999999876544321 1112222222332222 3334433   25899


Q ss_pred             EEEcCC-------CceEeeeccCCCcEEEEEEcCCCcEEEEEc-------CCc-EEEEecCCCCCCCCCCCccc---ccC
Q 010784          329 TIDLRT-------MQKVMTPAICKPILHSFSIMPSKSLICTGG-------IGK-AMTWDIRRSQDAVKPQPMAE---LDG  390 (501)
Q Consensus       329 ~~d~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-------~d~-i~iwd~~~~~~~~~~~~~~~---~~~  390 (501)
                      +||+.+       .+.+.++.+|.+.+..++++|++++|++++       .+. |.+||+.+.+...+.-++..   +..
T Consensus       397 v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~  476 (543)
T 1nir_A          397 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE  476 (543)
T ss_dssp             EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred             EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCC
Confidence            999998       888999999988889999999999999987       144 99999999875411111111   245


Q ss_pred             cccCeEEEEecCC--eEEEEe----cCCCcEEEEeCCCcccccccc
Q 010784          391 HVGSVTQLHMDPY--KIVTGG----RDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       391 h~~~v~~l~~~~~--~~l~~g----s~dg~i~iwd~~~~~~~~~~~  430 (501)
                      +...+..+.|+|+  .++++.    +.|+.|.|||..+++++.++.
T Consensus       477 ~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          477 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             SCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            5778999999999  444442    247999999999999999884

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1e-22  Score=185.36  Aligned_cols=257  Identities=12%  Similarity=0.051  Sum_probs=184.4

Q ss_pred             eecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C-Cceeeec
Q 010784          126 TQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K-GSCQRCF  202 (501)
Q Consensus       126 ~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~-~~~~~~~  202 (501)
                      ..++.++.|.+||+.++ +. ..+..|...|.+++|+|             ++++|++++ ++.|.+||  . ++.....
T Consensus        16 ~~~~~~~~i~~~d~~~~-~~-~~~~~~~~~v~~~~~sp-------------dg~~l~~~~-~~~i~~~d~~~~~~~~~~~   79 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTR-KM-RVVWQTPELFEAPNWSP-------------DGKYLLLNS-EGLLYRLSLAGDPSPEKVD   79 (297)
T ss_dssp             --CCCCEEEEEEETTTT-EE-EEEEEESSCCEEEEECT-------------TSSEEEEEE-TTEEEEEESSSCCSCEECC
T ss_pred             CCCCcceeEEEEeCCCC-ce-eeeccCCcceEeeEECC-------------CCCEEEEEc-CCeEEEEeCCCCCCceEec
Confidence            35677999999999874 33 35667899999999999             889999987 88999999  4 5555555


Q ss_pred             cCC-CCceEEEEeeecCCCCCCEEEEee--CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC
Q 010784          203 KGH-NGPVSTLSDKLLGDGSGKILASGG--EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK  279 (501)
Q Consensus       203 ~~h-~~~v~~l~~s~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~  279 (501)
                      ..| ...+.+++|+    +++++|++++  .++...+|.++....     ....+..+. .+..++|+|++..++++++.
T Consensus        80 ~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~-~~~~~~~spdg~~l~~~~~~  149 (297)
T 2ojh_A           80 TGFATICNNDHGIS----PDGALYAISDKVEFGKSAIYLLPSTGG-----TPRLMTKNL-PSYWHGWSPDGKSFTYCGIR  149 (297)
T ss_dssp             CTTCCCBCSCCEEC----TTSSEEEEEECTTTSSCEEEEEETTCC-----CCEECCSSS-SEEEEEECTTSSEEEEEEEE
T ss_pred             cccccccccceEEC----CCCCEEEEEEeCCCCcceEEEEECCCC-----ceEEeecCC-CccceEECCCCCEEEEEECC
Confidence            555 4778999997    8999999998  445666766653222     133444333 48889999844444448888


Q ss_pred             CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcE
Q 010784          280 DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSL  359 (501)
Q Consensus       280 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~  359 (501)
                      ++.+++|++.....                                           ....+..+...+.+++|+|++++
T Consensus       150 ~~~~~l~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~s~dg~~  186 (297)
T 2ojh_A          150 DQVFDIYSMDIDSG-------------------------------------------VETRLTHGEGRNDGPDYSPDGRW  186 (297)
T ss_dssp             TTEEEEEEEETTTC-------------------------------------------CEEECCCSSSCEEEEEECTTSSE
T ss_pred             CCceEEEEEECCCC-------------------------------------------cceEcccCCCccccceECCCCCE
Confidence            99999998643210                                           11223346678899999999998


Q ss_pred             EEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC-----------CcEEEEeCCCccc
Q 010784          360 ICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD-----------LRINIWETDTGML  425 (501)
Q Consensus       360 l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d-----------g~i~iwd~~~~~~  425 (501)
                      ++.++ .++ +++|++....     ..+..+..|...+..++|+|+ ++++.++.+           +.|.+||+.+++.
T Consensus       187 l~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          187 IYFNSSRTGQMQIWRVRVDG-----SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EEEEECTTSSCEEEEEETTS-----SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             EEEEecCCCCccEEEECCCC-----CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            77665 466 9999886322     123667777888999999999 666655554           5699999988765


Q ss_pred             ccccccCCCCCCCcceeeeEeeccccEEEEeecC
Q 010784          426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG  459 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  459 (501)
                      ......   .+|...+..++|+|+|++|++++.+
T Consensus       262 ~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          262 ETLFDL---FGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EEEEEE---EESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             eeeecc---CCCCcccccceECCCCCEEEEEEec
Confidence            433311   2456678999999999999998854

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=5.7e-22  Score=211.35  Aligned_cols=305  Identities=8%  Similarity=0.013  Sum_probs=217.7

Q ss_pred             ceEEeeCCcEEEeecCCe------eeEEEEecccccccc-----------------------------------------
Q 010784          114 DHILLDNNDIFSTQGSSI------QNIKIDNFLSESYYR-----------------------------------------  146 (501)
Q Consensus       114 ~~~~~~~~~~~~~~g~~d------~~i~vw~~~~~~~~~-----------------------------------------  146 (501)
                      ..++|+|||.++++++.+      ..+.+|++.++ ...                                         
T Consensus       110 ~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g-~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw  188 (1045)
T 1k32_A          110 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI-NFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW  188 (1045)
T ss_dssp             EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT-EEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred             ccccCCCCCEEEEEECCcCCCcccceEEEEECCCC-CeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence            889999999977777754      45667776543 211                                         


Q ss_pred             --------eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCceeeeccCCCCceEEEEee
Q 010784          147 --------ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDK  215 (501)
Q Consensus       147 --------~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s  215 (501)
                              ..+.+|...+.++.|++             + .++++++.||+++||.   .+.....+..|. .+...+|+
T Consensus       189 ~~~~~~~~~~l~~~~~~v~~~~~s~-------------d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~S  253 (1045)
T 1k32_A          189 IEVNSGAFKKIVDMSTHVSSPVIVG-------------H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLN  253 (1045)
T ss_dssp             EEEETTEEEEEECCSSCCEEEEEET-------------T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEE
T ss_pred             EECCCCCeEECcCCCCcccceEEeC-------------C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEc
Confidence                    11234555566666665             5 6777888899999996   355566666565 46677887


Q ss_pred             ecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC-----------CCCceeEEEEe-ecCCeEEEEEeCCCeE
Q 010784          216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG-----------HEKPIKLMSVA-GHKSFLLVTISKDSKV  283 (501)
Q Consensus       216 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------~~~~v~~l~~~-~~~~~~l~s~s~dg~v  283 (501)
                          ++|+.|+.+ .++.|.+||+....       +..+..           |...+..++|+ | +++.+++++ ++.|
T Consensus       254 ----pDG~~la~~-~~~~i~~~d~~~~~-------l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i  319 (1045)
T 1k32_A          254 ----TDGRRILFS-KGGSIYIFNPDTEK-------IEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQA  319 (1045)
T ss_dssp             ----ESSSCEEEE-ETTEEEEECTTTCC-------EEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEE
T ss_pred             ----CCCCEEEEE-eCCEEEEecCCceE-------eeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEE
Confidence                789988887 48999999994332       223433           34578999999 8 677787777 7899


Q ss_pred             EEEECCCCccccceecccceecCC-CceeeecCCCeEEEE--eC-CcEE-EEEcCCCceEeeeccCCCcEEEEEEcCCCc
Q 010784          284 RVWDTSTSSAVRSSCCVGMTSVPG-VPVDMKCHESMLYIA--SG-SSVV-TIDLRTMQKVMTPAICKPILHSFSIMPSKS  358 (501)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~-~~i~-~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~  358 (501)
                      .+|++.+++....      ..... .+..+.++ +...++  +. ..+. +||+.+++.... ..|...+..++|+|||+
T Consensus       320 ~~~~~~~~~~~~~------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~  391 (1045)
T 1k32_A          320 FIQDVSGTYVLKV------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGK  391 (1045)
T ss_dssp             EEECTTSSBEEEC------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSS
T ss_pred             EEEcCCCCceEEc------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCC
Confidence            9999987653221      12222 44555666 543333  33 2666 778887765443 37788999999999999


Q ss_pred             EEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC----------CcEEEEeCCCcccc
Q 010784          359 LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD----------LRINIWETDTGMLA  426 (501)
Q Consensus       359 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d----------g~i~iwd~~~~~~~  426 (501)
                      +|++++.++ |++||+.+++..      ..+.+|.+.+.+++|+|+ ++++.++.+          +.|++||+.+++ +
T Consensus       392 ~la~~~~~~~v~~~d~~tg~~~------~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~  464 (1045)
T 1k32_A          392 FAVVANDRFEIMTVDLETGKPT------VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-I  464 (1045)
T ss_dssp             EEEEEETTSEEEEEETTTCCEE------EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-E
T ss_pred             EEEEECCCCeEEEEECCCCceE------EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-E
Confidence            999999888 999999987643      455578889999999999 766665554          489999999877 5


Q ss_pred             cccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          427 NSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       427 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ..+     ..|...+..++|+|||++|++++  .++...+|+..
T Consensus       465 ~~l-----~~~~~~~~~~~~spdG~~l~~~s--~~~~~~~~~~~  501 (1045)
T 1k32_A          465 FAA-----TTENSHDYAPAFDADSKNLYYLS--YRSLDPSPDRV  501 (1045)
T ss_dssp             EEC-----SCSSSBEEEEEECTTSCEEEEEE--SCCCCCEECSS
T ss_pred             EEe-----eCCCcccCCceEcCCCCEEEEEe--cccCCcCcchh
Confidence            555     34566788899999999999988  45666667643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=4.6e-22  Score=204.58  Aligned_cols=313  Identities=10%  Similarity=-0.065  Sum_probs=209.2

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc---ceeEEEeeccCcCcccccCCCCcCcEEEEeeCC--
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA---RITCMRLFPLHETSLFRSEPQRTENVLVTSSCD--  187 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--  187 (501)
                      +.+++|+|||.++++ +.|+.+++||..++ +....+.+|..   .|.+++|||             ||++|++++.+  
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g-~~~~~~~~~~~~~~~v~~~~~Sp-------------Dg~~l~~~~~~~~   83 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETN-TSTVLIEGKKIESLRAIRYEISP-------------DREYALFSYNVEP   83 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGC-CCEEEECTTTTTTTTCSEEEECT-------------TSSEEEEEESCCC
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCC-cEEEEeccccccccccceEEECC-------------CCCEEEEEecCcc
Confidence            678899999998776 68899999999986 66667777765   499999999             89999998865  


Q ss_pred             -------CceEEec--CCce--eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          188 -------HSIRLWW--KGSC--QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       188 -------g~i~vwd--~~~~--~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                             +.|.+||  .++.  +....+|...+..++|+    |+|+.|+.++. +.|++||+.++..      ......
T Consensus        84 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S----PdG~~la~~~~-~~i~~~~~~~g~~------~~~~~~  152 (723)
T 1xfd_A           84 IYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG----PKGQQLIFIFE-NNIYYCAHVGKQA------IRVVST  152 (723)
T ss_dssp             CSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC----SSTTCEEEEET-TEEEEESSSSSCC------EEEECC
T ss_pred             ceeecceeeEEEEECCCCceEeccCCccccccccccEEC----CCCCEEEEEEC-CeEEEEECCCCce------EEEecC
Confidence                   6788999  3433  22233455568899997    89999999886 7999999988763      333333


Q ss_pred             CCCc------------------eeEEEEeecCCeEEEEEeCCC----------------------------------eEE
Q 010784          257 HEKP------------------IKLMSVAGHKSFLLVTISKDS----------------------------------KVR  284 (501)
Q Consensus       257 ~~~~------------------v~~l~~~~~~~~~l~s~s~dg----------------------------------~v~  284 (501)
                      +...                  +.+++|+| +++.|++++.|+                                  .|+
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~  231 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLH  231 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEE
Confidence            3332                  37899998 777888877543                                  799


Q ss_pred             EEECCCCccccceecccc-eecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCceEeeecc-CCCcE----EEE
Q 010784          285 VWDTSTSSAVRSSCCVGM-TSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQKVMTPAI-CKPIL----HSF  351 (501)
Q Consensus       285 vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~-~~~~v----~~v  351 (501)
                      +||+.+++.......... ......+..+.+++++.+++..       ..+.+||+.+++....+.. +...+    ..+
T Consensus       232 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  311 (723)
T 1xfd_A          232 VIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEP  311 (723)
T ss_dssp             EEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCC
T ss_pred             EEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCc
Confidence            999988764222111000 0113345567777777655321       2699999999887665543 33433    378


Q ss_pred             EEcCCCcEEEEE-c--CC----c--EEEEec-CCCCCCCCCCCcccccCcccCeEE-EEecCC-eEE-EEecCC--CcEE
Q 010784          352 SIMPSKSLICTG-G--IG----K--AMTWDI-RRSQDAVKPQPMAELDGHVGSVTQ-LHMDPY-KIV-TGGRDD--LRIN  416 (501)
Q Consensus       352 ~~~~~~~~l~~~-~--~d----~--i~iwd~-~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~-~~l-~~gs~d--g~i~  416 (501)
                      +|+|||+.|+.. +  ++    .  |.+||. ..++.    .....+..+...+.. ++|+|+ +.| +++..+  +.++
T Consensus       312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  387 (723)
T 1xfd_A          312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN----DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQ  387 (723)
T ss_dssp             EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS----CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred             eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc----cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence            999999876653 2  33    2  777883 43320    001344433344544 699999 544 455444  8899


Q ss_pred             EEeCCCcc--cccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          417 IWETDTGM--LANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       417 iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      +|++....  ....+...  ..+...+..++|+|||++|+....
T Consensus       388 l~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          388 LYSANTVGNFNRQCLSCD--LVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             EEEECSSTTCCCBCSSTT--SSSSCCCCEEEECTTSSEEEEECC
T ss_pred             EEEEeCCCCCCcceeccc--ccCCCCeEEEEECCCCCEEEEEcc
Confidence            99987532  33334210  014566889999999998887543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.8e-22  Score=206.94  Aligned_cols=313  Identities=12%  Similarity=0.031  Sum_probs=208.0

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccc-eecccCC-----------------cceeEEEeeccCcCcccccCC
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYR-ATLSDHK-----------------ARITCMRLFPLHETSLFRSEP  174 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~-~~~~~h~-----------------~~V~~~~~~~~~~~~~~~~~~  174 (501)
                      ++.+.|. ++.++ +++.++ | +||..++ +.+ ..+..|.                 ..|.+++|+|           
T Consensus        28 ~~~~~w~-g~~~~-~~~~~~-i-~~d~~tg-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp-----------   91 (706)
T 2z3z_A           28 VVGLQWM-GDNYV-FIEGDD-L-VFNKANG-KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAG-----------   91 (706)
T ss_dssp             CTTCEEE-TTEEE-EEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETT-----------
T ss_pred             CCCCcCc-CCeEE-EEeCCc-E-EEECCCC-cEeeEEeechhHhhhhccchhccccccccCceeEEECC-----------
Confidence            5667777 44444 444566 7 9999986 442 3333333                 4699999999           


Q ss_pred             CCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC-----CCccccc
Q 010784          175 QRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS-----SGKRGQQ  248 (501)
Q Consensus       175 ~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~  248 (501)
                        + ..++.+. ++.|++|| .......+..+...+.+++|+    |+|+.|+++ .|+.|++||+.+     ++.    
T Consensus        92 --d-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~S----pdG~~la~~-~~~~i~v~~~~~~~~~~g~~----  158 (706)
T 2z3z_A           92 --R-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFS----PVGDRVAYV-RNHNLYIARGGKLGEGMSRA----  158 (706)
T ss_dssp             --T-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEEC----TTSSEEEEE-ETTEEEEEECBCTTSCCCCC----
T ss_pred             --C-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCC----CCCCEEEEE-ECCeEEEEecCcccccCCCc----
Confidence              7 5555543 69999999 334444555677788999997    899999985 689999999988     553    


Q ss_pred             cceeeccCCCCc--------------eeEEEEeecCCeEEEEEe---------------------------------CCC
Q 010784          249 ALKATLYGHEKP--------------IKLMSVAGHKSFLLVTIS---------------------------------KDS  281 (501)
Q Consensus       249 ~~~~~~~~~~~~--------------v~~l~~~~~~~~~l~s~s---------------------------------~dg  281 (501)
                        ......+...              +.++.|+| +++.|++++                                 .+.
T Consensus       159 --~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~  235 (706)
T 2z3z_A          159 --IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV  235 (706)
T ss_dssp             --EESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred             --EEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence              2222222222              47899998 788888887                                 457


Q ss_pred             eEEEEECCCCccccceecccceecCCCceeeecCCCeE--EEEe-CC-----cEEEEEcCCCceEeeec--cCCC---cE
Q 010784          282 KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML--YIAS-GS-----SVVTIDLRTMQKVMTPA--ICKP---IL  348 (501)
Q Consensus       282 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~-----~i~~~d~~~~~~~~~~~--~~~~---~v  348 (501)
                      .|++||+.+++......   .......+..+.++++..  +++. ..     .+.+||+.+++....+.  .+..   .+
T Consensus       236 ~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          236 TVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             EEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             EEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            89999998875422110   012234456677776653  3322 22     79999999984333322  1222   24


Q ss_pred             EEEEEcC--CCcEEEEEcCCc-EEEEecC-CCCCCCCCCCcccccCcccCeEE-EEecCC--eEEEEecCCC----cEEE
Q 010784          349 HSFSIMP--SKSLICTGGIGK-AMTWDIR-RSQDAVKPQPMAELDGHVGSVTQ-LHMDPY--KIVTGGRDDL----RINI  417 (501)
Q Consensus       349 ~~v~~~~--~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~--~~l~~gs~dg----~i~i  417 (501)
                      .+++|+|  +|+++++++.++ +++|++. .++.      +..+..|...+.. ++|+|+  .++++++.++    .|..
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~------~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~  386 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL------IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC  386 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE------EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCE------EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence            6789999  999999998877 8888876 3332      3566667777877 799999  5666665665    6777


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC--CceEEEeeccCCc
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE--PGLLQFRDFSNAT  473 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~--~g~i~~w~~~~~~  473 (501)
                      ||+.+++ ...+.      +...+..++|+|||++|+.+..+.  .+.|++||+..+.
T Consensus       387 ~d~~~~~-~~~l~------~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          387 IDIKGGK-TKDLT------PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EETTCCC-CEESC------CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEcCCCC-ceecc------CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            7877765 33442      345688999999999988775432  2579999987765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=1.5e-21  Score=181.76  Aligned_cols=277  Identities=10%  Similarity=0.110  Sum_probs=183.3

Q ss_pred             cEEEeecCCeeeEEEEeccccc--ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC-CceEEec-C--
Q 010784          122 DIFSTQGSSIQNIKIDNFLSES--YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-HSIRLWW-K--  195 (501)
Q Consensus       122 ~~~~~~g~~d~~i~vw~~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-g~i~vwd-~--  195 (501)
                      ..++++++.++.|++|++....  +.+.. ..|...+.+++|+|             ++++|++++.+ +.|.+|+ .  
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sp-------------dg~~l~~~~~~~~~v~~~~~~~~   70 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSP-------------DKRYLYVGVRPEFRVLAYRIAPD   70 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECT-------------TSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECC-------------CCCEEEEeecCCCeEEEEEecCC
Confidence            3455566789999999985321  22222 35777899999999             78988888876 9999998 2  


Q ss_pred             -Cc--eeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC
Q 010784          196 -GS--CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS  271 (501)
Q Consensus       196 -~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  271 (501)
                       +.  .+..+..+. .+.+++|+    +++++|++++. ++.|.+||+..+..   ......+..+ ..+.+++|+| ++
T Consensus        71 ~~~~~~~~~~~~~~-~~~~~~~s----~dg~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~-~~~~~~~~s~-dg  140 (343)
T 1ri6_A           71 DGALTFAAESALPG-SLTHISTD----HQGQFVFVGSYNAGNVSVTRLEDGLP---VGVVDVVEGL-DGCHSANISP-DN  140 (343)
T ss_dssp             TCCEEEEEEEECSS-CCSEEEEC----TTSSEEEEEETTTTEEEEEEEETTEE---EEEEEEECCC-TTBCCCEECT-TS
T ss_pred             CCceeeccccccCC-CCcEEEEc----CCCCEEEEEecCCCeEEEEECCCCcc---ccccccccCC-CCceEEEECC-CC
Confidence             22  233444434 78899997    88987776654 88999999952211   1123344433 4578899998 56


Q ss_pred             eEEEEEe-CCCeEEEEECCC-CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec-cCCCcE
Q 010784          272 FLLVTIS-KDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-ICKPIL  348 (501)
Q Consensus       272 ~~l~s~s-~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v  348 (501)
                      +.+++++ .++.|.+||+.+ ++.....                                        ..... .....+
T Consensus       141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~  180 (343)
T 1ri6_A          141 RTLWVPALKQDRICLFTVSDDGHLVAQD----------------------------------------PAEVTTVEGAGP  180 (343)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEE----------------------------------------EEEEECSTTCCE
T ss_pred             CEEEEecCCCCEEEEEEecCCCceeeec----------------------------------------ccccccCCCCCc
Confidence            6666665 899999999986 4321000                                        00111 123467


Q ss_pred             EEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCccc---ccC---cccCeEEEEecCC--eEEEEecCCCcEEEE
Q 010784          349 HSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAE---LDG---HVGSVTQLHMDPY--KIVTGGRDDLRINIW  418 (501)
Q Consensus       349 ~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~---~~~---h~~~v~~l~~~~~--~~l~~gs~dg~i~iw  418 (501)
                      ..++|+|+++++++++ .++ |.+||+......  ......   +..   ....+..++|+|+  .+++++..++.|.+|
T Consensus       181 ~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~  258 (343)
T 1ri6_A          181 RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN--IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF  258 (343)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEESSCTTSC--CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEE
Confidence            8899999999765554 666 999999642111  011111   111   1335678999999  455566689999999


Q ss_pred             eCC--C--cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          419 ETD--T--GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       419 d~~--~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      |+.  +  .+.+..+.     .+ ..+..++|+|+|++|++++. .++.|.+|++..
T Consensus       259 d~~~~~~~~~~~~~~~-----~~-~~~~~~~~s~dg~~l~~~~~-~~~~v~v~~~d~  308 (343)
T 1ri6_A          259 SVSEDGSVLSKEGFQP-----TE-TQPRGFNVDHSGKYLIAAGQ-KSHHISVYEIVG  308 (343)
T ss_dssp             EECTTSCCEEEEEEEE-----CS-SSCCCEEECTTSSEEEEECT-TTCEEEEEEEET
T ss_pred             EEcCCCCceEEeeeec-----CC-CccceEEECCCCCEEEEecC-CCCeEEEEEEcC
Confidence            998  2  33444442     12 23788999999999888874 469999997764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=5.4e-21  Score=178.79  Aligned_cols=270  Identities=9%  Similarity=0.044  Sum_probs=198.6

Q ss_pred             cCCCCceEEeeCCcEEEeecCC-------eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCc-E
Q 010784          109 VAKPHDHILLDNNDIFSTQGSS-------IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-V  180 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~-------d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~  180 (501)
                      ....+..+++++++.++++++.       ++.|.+||..++ +....+... ..+..++|+|             +++ +
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~s~-------------dg~~l  103 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL-EVTQAIHND-LKPFGATINN-------------TTQTL  103 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC-CEEEEEEES-SCCCSEEEET-------------TTTEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-eEEEEEecC-CCcceEEECC-------------CCCEE
Confidence            3456789999999877765552       679999999885 666665543 4478899999             777 4


Q ss_pred             EEEeeCCCceEEec--CCceeeeccCCCCc---------eEEEEeeecCCCCCCEEEEee--CCCcEEEEeccCCCcccc
Q 010784          181 LVTSSCDHSIRLWW--KGSCQRCFKGHNGP---------VSTLSDKLLGDGSGKILASGG--EDATVRLWSLSSSGKRGQ  247 (501)
Q Consensus       181 l~s~~~dg~i~vwd--~~~~~~~~~~h~~~---------v~~l~~s~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~  247 (501)
                      ++++..++.|.+||  +++.+..+..+...         +.+++|+    ++++++++++  .++.|.+||..+++    
T Consensus       104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~dg~~l~~~~~~~~~~i~~~d~~~~~----  175 (353)
T 3vgz_A          104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD----DATNTVYISGIGKESVIWVVDGGNIK----  175 (353)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE----TTTTEEEEEEESSSCEEEEEETTTTE----
T ss_pred             EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC----CCCCEEEEEecCCCceEEEEcCCCCc----
Confidence            55566689999999  66666666554322         6889997    7888777766  47889999998876    


Q ss_pred             ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcE
Q 010784          248 QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV  327 (501)
Q Consensus       248 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  327 (501)
                        ....+..+...+..++|+| +++.+++++.++.|.+||+.+++.......                            
T Consensus       176 --~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~----------------------------  224 (353)
T 3vgz_A          176 --LKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKL----------------------------  224 (353)
T ss_dssp             --EEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEEC----------------------------
T ss_pred             --eEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEc----------------------------
Confidence              3555554566678899998 677888888899999999988754221110                            


Q ss_pred             EEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC-Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--
Q 010784          328 VTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI-GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--  403 (501)
Q Consensus       328 ~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--  403 (501)
                                  ...++...+.+++|+|+++++++++. ++ |.+||..+++..      ..+....  ...++|+|+  
T Consensus       225 ------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~------~~~~~~~--~~~~~~s~dg~  284 (353)
T 3vgz_A          225 ------------LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL------AKVAAPE--SLAVLFNPARN  284 (353)
T ss_dssp             ------------CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE------EEEECSS--CCCEEEETTTT
T ss_pred             ------------CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE------EEEEcCC--CceEEECCCCC
Confidence                        00124556788999999987776664 45 999999887643      4443322  256899999  


Q ss_pred             eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          404 KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      .++++...++.|.+||..+++.+..+..      ...+..++|+|||++|+++..
T Consensus       285 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          285 EAYVTHRQAGKVSVIDAKSYKVVKTFDT------PTHPNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC------CSEEEEEEECTTSCEEEEEEE
T ss_pred             EEEEEECCCCeEEEEECCCCeEEEEEec------CCCCCeEEEcCCCCEEEEEEc
Confidence            4777776899999999999998887742      236789999999998877764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=4.2e-21  Score=197.93  Aligned_cols=281  Identities=11%  Similarity=-0.028  Sum_probs=196.9

Q ss_pred             CcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CC-----ceEEec--CCceeeeccCCCC-----------------
Q 010784          153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DH-----SIRLWW--KGSCQRCFKGHNG-----------------  207 (501)
Q Consensus       153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg-----~i~vwd--~~~~~~~~~~h~~-----------------  207 (501)
                      ...|.+++|+|             ||++|++++. ||     .|++||  +++....+..+..                 
T Consensus        36 ~~~~~~~~~Sp-------------dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (741)
T 2ecf_A           36 GPTLMKPKVAP-------------DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRER  102 (741)
T ss_dssp             CCCCEEEEECT-------------TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------
T ss_pred             CCCCCCceEec-------------CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhh
Confidence            45799999999             8999999998 88     899999  5555555544332                 


Q ss_pred             -------ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC
Q 010784          208 -------PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD  280 (501)
Q Consensus       208 -------~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d  280 (501)
                             .|.+++|+    |+|++|++++. +.|.+||+.++..    .....+..|...+..++|+| +++.|++++ +
T Consensus       103 ~~~~~~~~v~~~~~S----pDg~~l~~~~~-~~i~~~d~~~~~~----~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~  171 (741)
T 2ecf_A          103 QRIAAMTGIVDYQWS----PDAQRLLFPLG-GELYLYDLKQEGK----AAVRQLTHGEGFATDAKLSP-KGGFVSFIR-G  171 (741)
T ss_dssp             ----CCEESCCCEEC----TTSSEEEEEET-TEEEEEESSSCST----TSCCBCCCSSSCEEEEEECT-TSSEEEEEE-T
T ss_pred             hhhccccCcceeEEC----CCCCEEEEEeC-CcEEEEECCCCCc----ceEEEcccCCcccccccCCC-CCCEEEEEe-C
Confidence                   37889997    89999999886 8999999998720    01345667788899999998 788888887 4


Q ss_pred             CeEEEEECCCCccccceeccccee-----------cCCCceeeecCCCe--EEEEe-CC---------------------
Q 010784          281 SKVRVWDTSTSSAVRSSCCVGMTS-----------VPGVPVDMKCHESM--LYIAS-GS---------------------  325 (501)
Q Consensus       281 g~v~vwd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~~~-~~---------------------  325 (501)
                      +.|++||+.+++............           ....+..+.+++++  ++++. ++                     
T Consensus       172 ~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~  251 (741)
T 2ecf_A          172 RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ  251 (741)
T ss_dssp             TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred             CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence            689999998875432211100000           00113445555554  33332 11                     


Q ss_pred             ------------cEEEEEcCC-CceEeeec--cCCCcEEEEEEcCCCcEEEEEcC-----Cc-EEEEecCCCCCCCCCCC
Q 010784          326 ------------SVVTIDLRT-MQKVMTPA--ICKPILHSFSIMPSKSLICTGGI-----GK-AMTWDIRRSQDAVKPQP  384 (501)
Q Consensus       326 ------------~i~~~d~~~-~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~-----d~-i~iwd~~~~~~~~~~~~  384 (501)
                                  .+.+||+.+ ++......  .|...+.+++| |||++|+.++.     +. |++||+.+++..     
T Consensus       252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-----  325 (741)
T 2ecf_A          252 RYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-----  325 (741)
T ss_dssp             ECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-----
T ss_pred             ecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-----
Confidence                        688889988 77654433  36778999999 99999887652     45 999999987643     


Q ss_pred             cccccCccc----CeEEEEecCC-eEEEEecCCCcEEEEeCC-CcccccccccCCCCCCCcceeee-EeeccccEEEEee
Q 010784          385 MAELDGHVG----SVTQLHMDPY-KIVTGGRDDLRINIWETD-TGMLANSLLCNYPEEADISTGCS-AMAVSGCRIVTAS  457 (501)
Q Consensus       385 ~~~~~~h~~----~v~~l~~~~~-~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~s~~  457 (501)
                       ..+..+..    .+..++|+|+ +++++++.||.++||.+. +++ ...+     ..+...+..+ .|+|+|+.|+..+
T Consensus       326 -~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l-----~~~~~~v~~~~~~s~dg~~l~~~~  398 (741)
T 2ecf_A          326 -VLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL-----THGNWSVDELLAVDEKAGLAYFRA  398 (741)
T ss_dssp             -EEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES-----CCSSSCEEEEEEEETTTTEEEEEE
T ss_pred             -EEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee-----eecceEEEeEeEEeCCCCEEEEEE
Confidence             33333332    4568899999 888888899988888775 344 5566     3345567776 5999999886655


Q ss_pred             cCCCc--eEEEeeccC
Q 010784          458 YGEPG--LLQFRDFSN  471 (501)
Q Consensus       458 ~d~~g--~i~~w~~~~  471 (501)
                      . .++  .+++|++..
T Consensus       399 ~-~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          399 G-IESARESQIYAVPL  413 (741)
T ss_dssp             C-SSCTTCBEEEEEET
T ss_pred             e-CCCCceEEEEEEEc
Confidence            3 334  899999865

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=4.7e-21  Score=183.24  Aligned_cols=248  Identities=8%  Similarity=-0.009  Sum_probs=170.4

Q ss_pred             CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCc------------eeee-----ccCCCCceEEEEee
Q 010784          153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGS------------CQRC-----FKGHNGPVSTLSDK  215 (501)
Q Consensus       153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~------------~~~~-----~~~h~~~v~~l~~s  215 (501)
                      ...++.+++++             ++.++++++.|| +++|+...            .+..     ...+...|.+++|+
T Consensus        36 ~~~~n~lavs~-------------~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  101 (434)
T 2oit_A           36 KERSSLLAVSN-------------KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS  101 (434)
T ss_dssp             CSCCBCEEEET-------------TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC
T ss_pred             CCCccEEEEec-------------CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc
Confidence            44689999998             788999999888 88886110            0110     11356679999997


Q ss_pred             ecCCCCCCEEE----EeeCCCcEEEEeccCC-----CccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEE
Q 010784          216 LLGDGSGKILA----SGGEDATVRLWSLSSS-----GKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVW  286 (501)
Q Consensus       216 ~~~~~~~~~l~----sg~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vw  286 (501)
                          +++++|+    +|+.|+.|++||+.+.     ...........+.+|...|.+++|+|.++.+|++++.||.|++|
T Consensus       102 ----pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw  177 (434)
T 2oit_A          102 ----CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL  177 (434)
T ss_dssp             ----TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             ----CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence                8899999    8999999999999764     11001112456678999999999999668899999999999999


Q ss_pred             ECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC
Q 010784          287 DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG  366 (501)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d  366 (501)
                      |++++..                                            +....+|...|.+++|+|+|++|++|+.|
T Consensus       178 D~~~~~~--------------------------------------------~~~~~~~~~~v~~v~wspdg~~lasgs~d  213 (434)
T 2oit_A          178 QVTETVK--------------------------------------------VCATLPSTVAVTSVCWSPKGKQLAVGKQN  213 (434)
T ss_dssp             EESSSEE--------------------------------------------EEEEECGGGCEEEEEECTTSSCEEEEETT
T ss_pred             EcCCCcc--------------------------------------------eeeccCCCCceeEEEEcCCCCEEEEEcCC
Confidence            9987632                                            12233477889999999999999999998


Q ss_pred             c-EEEEecCCCCCCCCCCCccccc-------CcccCeEEEEecCC-eEEEE-ecCCCc------EEEEeCCCcccc--cc
Q 010784          367 K-AMTWDIRRSQDAVKPQPMAELD-------GHVGSVTQLHMDPY-KIVTG-GRDDLR------INIWETDTGMLA--NS  428 (501)
Q Consensus       367 ~-i~iwd~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~-~~l~~-gs~dg~------i~iwd~~~~~~~--~~  428 (501)
                      + |++||.+ ++..      ..+.       .|...|.+++|+++ .++++ ++.||.      +++|++...+..  ..
T Consensus       214 g~v~iwd~~-~~~~------~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~  286 (434)
T 2oit_A          214 GTVVQYLPT-LQEK------KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEI  286 (434)
T ss_dssp             SCEEEECTT-CCEE------EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCE
T ss_pred             CcEEEEccC-Cccc------ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcc
Confidence            8 9999998 3221      2221       24458999999999 55533 344543      899999864311  11


Q ss_pred             cccCCCC-----CCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          429 LLCNYPE-----EADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       429 ~~~~~~~-----~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +......     ....+-..+.+-++.+++++++. ..+.|.+....
T Consensus       287 ~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~-~s~dv~vl~~~  332 (434)
T 2oit_A          287 FVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA-ASTEVSILARQ  332 (434)
T ss_dssp             EEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET-TCSBCEEEEEC
T ss_pred             eEecccCCCCCCCCcCcceeeehhccCCEEEEecC-CCCceeEEEec
Confidence            1110000     11222223334488888888776 45666666644

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=2.3e-20  Score=178.54  Aligned_cols=203  Identities=9%  Similarity=-0.004  Sum_probs=150.6

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccc---------cce-----ecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY---------YRA-----TLSDHKARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~---------~~~-----~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      .++.+++++++.++++|+.++ +++|+......         ...     ....|.+.|++++|+|             +
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-------------d  103 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-------------D  103 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-------------T
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-------------C
Confidence            489999999999999998888 88887542100         000     1123566799999999             8


Q ss_pred             CcEEE----EeeCCCceEEec--CC--------c---eeeeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEec
Q 010784          178 ENVLV----TSSCDHSIRLWW--KG--------S---CQRCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSL  239 (501)
Q Consensus       178 ~~~l~----s~~~dg~i~vwd--~~--------~---~~~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~  239 (501)
                      +++|+    +|+.|++|+|||  .+        +   .+..+.+|...|.+++|+    ++ +.+|++|+.||+|++||+
T Consensus       104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~----p~~~~~las~s~Dg~v~iwD~  179 (434)
T 2oit_A          104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWN----PTVPSMVAVCLADGSIAVLQV  179 (434)
T ss_dssp             SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEEC----SSCTTEEEEEETTSCEEEEEE
T ss_pred             CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEEC----CCCCCEEEEEECCCeEEEEEc
Confidence            89999    899999999998  22        1   145667899999999997    55 789999999999999999


Q ss_pred             cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784          240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML  319 (501)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (501)
                      +++.      ......+|...|.+++|+| ++++|++|+.||.|++||++ ++.........                  
T Consensus       180 ~~~~------~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~------------------  233 (434)
T 2oit_A          180 TETV------KVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP------------------  233 (434)
T ss_dssp             SSSE------EEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCT------------------
T ss_pred             CCCc------ceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCc------------------
Confidence            9874      3445567889999999998 68899999999999999998 32211100000                  


Q ss_pred             EEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CC------c-EEEEecCCCC
Q 010784          320 YIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IG------K-AMTWDIRRSQ  377 (501)
Q Consensus       320 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d------~-i~iwd~~~~~  377 (501)
                                         .....|...+.+++|++++.++++.+ .+      . +++|++++.+
T Consensus       234 -------------------~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          234 -------------------FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             -------------------TCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             -------------------ccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence                               00012344789999999988886544 21      2 8999998753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=1.6e-20  Score=170.63  Aligned_cols=240  Identities=10%  Similarity=0.005  Sum_probs=174.8

Q ss_pred             CCeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccc-ccccceecccC-CcceeEEEeeccCcCcccccCCCCc
Q 010784          100 DPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS-ESYYRATLSDH-KARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       100 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~-~~~~~~~~~~h-~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      ......+..+...+.+++|+|+|.++++++ ++.|.+||+.+ + +......+| ...|.+++|+|             +
T Consensus        31 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~sp-------------d   95 (297)
T 2ojh_A           31 TRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP-SPEKVDTGFATICNNDHGISP-------------D   95 (297)
T ss_dssp             TTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC-SCEECCCTTCCCBCSCCEECT-------------T
T ss_pred             CCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC-CceEeccccccccccceEECC-------------C
Confidence            333445666788899999999999999986 78999999987 5 555555565 47899999999             8


Q ss_pred             CcEEEEee--CCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEE-EeeCCCcEEEEeccCCCccccccce
Q 010784          178 ENVLVTSS--CDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILA-SGGEDATVRLWSLSSSGKRGQQALK  251 (501)
Q Consensus       178 ~~~l~s~~--~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~  251 (501)
                      +++|++++  .++...||.   .+.....+..+. .+.+++|+    ++++.|+ +++.++.+++|+++....     ..
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~s----pdg~~l~~~~~~~~~~~l~~~~~~~~-----~~  165 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWS----PDGKSFTYCGIRDQVFDIYSMDIDSG-----VE  165 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEEC----TTSSEEEEEEEETTEEEEEEEETTTC-----CE
T ss_pred             CCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEEC----CCCCEEEEEECCCCceEEEEEECCCC-----cc
Confidence            89999998  445677765   334445554443 48889997    7888777 788899999999764332     24


Q ss_pred             eeccCCCCceeEEEEeecCCeEEEEEe-CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEE
Q 010784          252 ATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI  330 (501)
Q Consensus       252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  330 (501)
                      ..+..+...+.++.|+| ++..++.++ .++.+++|++....                                      
T Consensus       166 ~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~--------------------------------------  206 (297)
T 2ojh_A          166 TRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDG--------------------------------------  206 (297)
T ss_dssp             EECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTS--------------------------------------
T ss_pred             eEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCC--------------------------------------
Confidence            56667888999999998 566565554 68899999875221                                      


Q ss_pred             EcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC-----------c-EEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784          331 DLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG-----------K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL  398 (501)
Q Consensus       331 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----------~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  398 (501)
                           ..+..+..|...+.+++|+|++++|++++.+           . |++||+.+++.    ..+..+.+|...+.++
T Consensus       207 -----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~  277 (297)
T 2ojh_A          207 -----SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV----ETLFDLFGGQGTMNSP  277 (297)
T ss_dssp             -----SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC----EEEEEEEESTTTSCSC
T ss_pred             -----CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc----eeeeccCCCCcccccc
Confidence                 1122334456678899999999998888753           4 99999988653    2234455778889999


Q ss_pred             EecCC-eEEEEecCC
Q 010784          399 HMDPY-KIVTGGRDD  412 (501)
Q Consensus       399 ~~~~~-~~l~~gs~d  412 (501)
                      +|+|+ +.|++++.+
T Consensus       278 ~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          278 NWSPDGDEFAYVRYF  292 (297)
T ss_dssp             CBCTTSSEEEEEEEC
T ss_pred             eECCCCCEEEEEEec
Confidence            99999 555544443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=1.7e-20  Score=174.16  Aligned_cols=269  Identities=11%  Similarity=0.049  Sum_probs=186.9

Q ss_pred             EEEeecCCeeeEEEEecccccccceeccc-CCc-ceeEEEeeccCcCcccccCCCCcCcE-EEEeeCCCceEEec--CCc
Q 010784          123 IFSTQGSSIQNIKIDNFLSESYYRATLSD-HKA-RITCMRLFPLHETSLFRSEPQRTENV-LVTSSCDHSIRLWW--KGS  197 (501)
Q Consensus       123 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-h~~-~V~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~dg~i~vwd--~~~  197 (501)
                      .++++++.++.|.+||..++ +.+..+.. +.. .+..++|+|             +++. +++++.++.|.+||  +++
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~-------------dg~~l~v~~~~~~~v~~~d~~~~~   67 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAP-------------GGRIAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-EEEEEEECTTCTTCCCCEEECT-------------TSSEEEEEETTTTEEEEEETTTCC
T ss_pred             cEEEEcCCCCeEEEEECCCC-cEEEEEEcCCCCCCccceEEcC-------------CCCEEEEEeCCCCeEEEEECCCCC
Confidence            57888999999999999885 55655542 322 488899999             7765 46666789999999  566


Q ss_pred             eeeeccC-C----CCceEEEEeeecCCCCCCEEEEee------------CCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784          198 CQRCFKG-H----NGPVSTLSDKLLGDGSGKILASGG------------EDATVRLWSLSSSGKRGQQALKATLYGHEKP  260 (501)
Q Consensus       198 ~~~~~~~-h----~~~v~~l~~s~~~~~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  260 (501)
                      .+..+.. +    ...+.+++|+    ++++++++++            .++.|.+||+.+++.      ...+.. ...
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~s----~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~-~~~  136 (337)
T 1pby_B           68 TLGRIDLSTPEERVKSLFGAALS----PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR------RKAFEA-PRQ  136 (337)
T ss_dssp             EEEEEECCBTTEEEECTTCEEEC----TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE------EEEEEC-CSS
T ss_pred             eEeeEEcCCcccccccccceEEC----CCCCEEEEEecccccccccccccCceEEEEECCCCcE------EEEEeC-CCC
Confidence            6655542 1    2257788996    8998888886            579999999987652      444433 445


Q ss_pred             eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC---------------
Q 010784          261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS---------------  325 (501)
Q Consensus       261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  325 (501)
                      +..++|+| ++++++++  ++.|.+||+.+++.........    ......+..+...+++....               
T Consensus       137 ~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~  209 (337)
T 1pby_B          137 ITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS----WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDI  209 (337)
T ss_dssp             CCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTT----TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTS
T ss_pred             cceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccc----cCCCceeCCCccEEeeeccCCCceeeeeecccccc
Confidence            77889998 66666666  6889999999886543222111    00111222222211111110               


Q ss_pred             ----------cEEEEEcCCCceE-eeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccC
Q 010784          326 ----------SVVTIDLRTMQKV-MTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGS  394 (501)
Q Consensus       326 ----------~i~~~d~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~  394 (501)
                                .+.+||+.+++.. ..+..+...+.+++|+|++++++++ ++.|++||+.+++..      ..+.. ...
T Consensus       210 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~------~~~~~-~~~  281 (337)
T 1pby_B          210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASI------KRVPL-PHS  281 (337)
T ss_dssp             CTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEE------EEEEC-SSC
T ss_pred             ccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCc------ceecC-CCc
Confidence                      4789999988764 3344566778899999999999888 334999999886543      44433 346


Q ss_pred             eEEEEecCC-eEEEEecCCCcEEEEeCCCccccccccc
Q 010784          395 VTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLC  431 (501)
Q Consensus       395 v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~  431 (501)
                      +.+++|+|+ +.+++++.++.|++||+.+++.+..+..
T Consensus       282 ~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             CCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             eeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            789999999 6555567899999999999998888753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=1.3e-19  Score=168.90  Aligned_cols=268  Identities=9%  Similarity=0.067  Sum_probs=176.2

Q ss_pred             CeeeEEEEecccc-cccc-eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC---CCceEEec--CCc--eee
Q 010784          130 SIQNIKIDNFLSE-SYYR-ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC---DHSIRLWW--KGS--CQR  200 (501)
Q Consensus       130 ~d~~i~vw~~~~~-~~~~-~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~vwd--~~~--~~~  200 (501)
                      .++.+.+|+++.. .+.. .....+...+..++|+|             +|+ |++++.   ++.|.+|+  .+.  .+.
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp-------------dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~   79 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA-------------KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN   79 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT-------------TCE-EEEEEEETTEEEEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc-------------CCe-EEEEEecCCCceEEEEEecCCcEEEee
Confidence            4567778876542 1222 23345567788899999             788 554443   68999998  333  334


Q ss_pred             eccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCCccccccceeeccC---------CCCceeEEEEeecC
Q 010784          201 CFKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSGKRGQQALKATLYG---------HEKPIKLMSVAGHK  270 (501)
Q Consensus       201 ~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~~~v~~l~~~~~~  270 (501)
                      .+..+...+..++|+    +++++|++++ .++.|.+|++.....   ...+..+..         +...+.+++|+| +
T Consensus        80 ~~~~~~~~p~~~a~s----pdg~~l~~~~~~~~~v~v~~~~~~g~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-d  151 (347)
T 3hfq_A           80 TVVAPGTPPAYVAVD----EARQLVYSANYHKGTAEVMKIAADGA---LTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-D  151 (347)
T ss_dssp             EEEEESCCCSEEEEE----TTTTEEEEEETTTTEEEEEEECTTSC---EEEEEEEECCCCCSSTTCSSCCEEEEEECT-T
T ss_pred             eeecCCCCCEEEEEC----CCCCEEEEEeCCCCEEEEEEeCCCCC---eeecceeecCCCCCCccccCCCceEEEECC-C
Confidence            445577788999997    8999888887 679999999964322   111222211         123478899998 5


Q ss_pred             CeEEEEEeCCCeEEEEECC-CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc-CCCcE
Q 010784          271 SFLLVTISKDSKVRVWDTS-TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI-CKPIL  348 (501)
Q Consensus       271 ~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v  348 (501)
                      ++++++...++.|.+|++. +++...                                          ...+.. ....+
T Consensus       152 g~l~v~~~~~~~v~~~~~~~~g~~~~------------------------------------------~~~~~~~~g~~p  189 (347)
T 3hfq_A          152 NRLAVIDLGSDKVYVYNVSDAGQLSE------------------------------------------QSVLTMEAGFGP  189 (347)
T ss_dssp             SCEEEEETTTTEEEEEEECTTSCEEE------------------------------------------EEEEECCTTCCE
T ss_pred             CcEEEEeCCCCEEEEEEECCCCcEEE------------------------------------------eeeEEcCCCCCC
Confidence            5577777778999999998 332110                                          011111 12356


Q ss_pred             EEEEEcCCCcEEEEE-cCCc-EEEEecCC--CCCCCCCCCcccccCcc------cCeEEEEecCC-e-EEEEecCCCcEE
Q 010784          349 HSFSIMPSKSLICTG-GIGK-AMTWDIRR--SQDAVKPQPMAELDGHV------GSVTQLHMDPY-K-IVTGGRDDLRIN  416 (501)
Q Consensus       349 ~~v~~~~~~~~l~~~-~~d~-i~iwd~~~--~~~~~~~~~~~~~~~h~------~~v~~l~~~~~-~-~l~~gs~dg~i~  416 (501)
                      ..++|+|+|++++++ ..++ |.+|++..  ++.    ..+..+....      ..+..++|+|+ + +++++..++.|.
T Consensus       190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~  265 (347)
T 3hfq_A          190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF----TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLA  265 (347)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE----EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce----EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence            789999999966664 4556 99999875  221    1112222111      45889999999 5 556766789999


Q ss_pred             EEeCCCc---ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          417 IWETDTG---MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       417 iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      +|++...   +.+..+.     .+...+..++|+|||++|++++. .++.|.+|++..
T Consensus       266 v~~~~~~g~~~~~~~~~-----~~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~~~d~  317 (347)
T 3hfq_A          266 VFAVTADGHLTLIQQIS-----TEGDFPRDFDLDPTEAFVVVVNQ-NTDNATLYARDL  317 (347)
T ss_dssp             EEEECGGGCEEEEEEEE-----CSSSCCCEEEECTTSSEEEEEET-TTTEEEEEEECT
T ss_pred             EEEECCCCcEEEeEEEe-----cCCCCcCeEEECCCCCEEEEEEc-CCCcEEEEEEeC
Confidence            9999732   3344442     23445789999999999988875 468999997654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=1.5e-20  Score=188.05  Aligned_cols=266  Identities=12%  Similarity=0.031  Sum_probs=185.5

Q ss_pred             CCceEEeeCCcEEEeecCC-eeeEEEEecccccccceecccCC-cceeEEEeeccCcCcccccCCCCcCcEEEEeeC---
Q 010784          112 PHDHILLDNNDIFSTQGSS-IQNIKIDNFLSESYYRATLSDHK-ARITCMRLFPLHETSLFRSEPQRTENVLVTSSC---  186 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~-d~~i~vw~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---  186 (501)
                      +|.++++++||+.||+++. ++.++||++.++ +. ..+..|. ..|..++|+|             + +++++++.   
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~~-~~lt~~~~~~~~~~~~sp-------------d-~~l~~~~~~~g   86 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-ET-VKLNREPINSVLDPHYGV-------------G-RVILVRDVSKG   86 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETT-EE-EECCSSCCSEECEECTTC-------------S-EEEEEEECSTT
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCC-Cc-EeeecccccccccccCCC-------------C-eEEEEeccCCC
Confidence            4889999999999998887 999999998653 44 4455555 6899999998             7 77777765   


Q ss_pred             CCceEEec--C--CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784          187 DHSIRLWW--K--GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       187 dg~i~vwd--~--~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      +...++|.  .  ......+..+. .+...+|+|  ++++..+++++.+ .+.+||+.+++.      . .+..+..  .
T Consensus        87 ~~~~~l~~~~~~~~g~~~~l~~~~-~~~~~~~s~--dg~~~~~~s~~~~-~~~l~d~~~g~~------~-~l~~~~~--~  153 (582)
T 3o4h_A           87 AEQHALFKVNTSRPGEEQRLEAVK-PMRILSGVD--TGEAVVFTGATED-RVALYALDGGGL------R-ELARLPG--F  153 (582)
T ss_dssp             SCCEEEEEEETTSTTCCEECTTSC-SBEEEEEEE--CSSCEEEEEECSS-CEEEEEEETTEE------E-EEEEESS--C
T ss_pred             CcceEEEEEeccCCCccccccCCC-CceeeeeCC--CCCeEEEEecCCC-CceEEEccCCcE------E-EeecCCC--c
Confidence            45566664  3  22222333222 334557762  2223345555444 555999988752      2 2222222  7


Q ss_pred             EEEEeecCCeEEEEEeCC----CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784          263 LMSVAGHKSFLLVTISKD----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV  338 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  338 (501)
                      +++|+| +++.+++++.+    +.|++||+.+++.                                             
T Consensus       154 ~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~---------------------------------------------  187 (582)
T 3o4h_A          154 GFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGL---------------------------------------------  187 (582)
T ss_dssp             EEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCC---------------------------------------------
T ss_pred             eEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCc---------------------------------------------
Confidence            889998 78888887776    7788999877642                                             


Q ss_pred             eeeccCCCcEEEEEEcCCCcEEEEEcCCc---EEEEecCCCCCCCCCCCcccccCcccCeEEEE--------ecCC-eEE
Q 010784          339 MTPAICKPILHSFSIMPSKSLICTGGIGK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLH--------MDPY-KIV  406 (501)
Q Consensus       339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~--------~~~~-~~l  406 (501)
                      ..+..|.+.+.+++|+|||+.|+++..++   |++||+.+++.       ..+.+|...+..++        |+|+ .++
T Consensus       188 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~spdg~~~  260 (582)
T 3o4h_A          188 RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV-------EDLELPSKDFSSYRPTAITWLGYLPDGRLA  260 (582)
T ss_dssp             EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE-------EECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred             eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE-------EEccCCCcChhhhhhccccceeEcCCCcEE
Confidence            23445678889999999999999766443   99999987653       24556666666666        9999 899


Q ss_pred             EEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC-CceEEEeecc
Q 010784          407 TGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE-PGLLQFRDFS  470 (501)
Q Consensus       407 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~-~g~i~~w~~~  470 (501)
                      ++++.|+.+++|++  ++.+...        ...+..++|+ +|+++++++.+. ...+++|+..
T Consensus       261 ~~~~~~g~~~l~~~--g~~~~~~--------~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          261 VVARREGRSAVFID--GERVEAP--------QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEETTEEEEEET--TEEECCC--------SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             EEEEcCCcEEEEEE--CCeeccC--------CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence            98889999999999  6655432        3568899999 999998887531 1346666644

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=1.8e-19  Score=184.69  Aligned_cols=279  Identities=12%  Similarity=0.039  Sum_probs=190.7

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      .++.+++|+|++.++++.  ++.+.+||+.++ +. ..+..+...+.+++|+|             +|+.|+++ .|+.|
T Consensus        82 ~~v~~~~~spd~~~~~~~--~~~i~~~d~~~~-~~-~~l~~~~~~~~~~~~Sp-------------dG~~la~~-~~~~i  143 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLFT--QGGLVGFDMLAR-KV-TYLFDTNEETASLDFSP-------------VGDRVAYV-RNHNL  143 (706)
T ss_dssp             CCCEEEEETTTTEEEEEE--TTEEEEEETTTT-EE-EEEECCTTCCTTCEECT-------------TSSEEEEE-ETTEE
T ss_pred             cCceeEEECCCCeEEEEE--CCEEEEEECCCC-ce-EEccCCcccccCCcCCC-------------CCCEEEEE-ECCeE
Confidence            569999999996555553  499999999874 33 34556777899999999             89999985 68999


Q ss_pred             EEec--C-----CceeeeccCCCCc--------------eEEEEeeecCCCCCCEEEEee--------------------
Q 010784          191 RLWW--K-----GSCQRCFKGHNGP--------------VSTLSDKLLGDGSGKILASGG--------------------  229 (501)
Q Consensus       191 ~vwd--~-----~~~~~~~~~h~~~--------------v~~l~~s~~~~~~~~~l~sg~--------------------  229 (501)
                      ++||  .     ++.......+...              +.++.|+    |+|++|++++                    
T Consensus       144 ~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S----pDg~~la~~~~d~~~~~~~~~~~~~~~~~~  219 (706)
T 2z3z_A          144 YIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS----PKGSCLAFYRMDQSMVKPTPIVDYHPLEAE  219 (706)
T ss_dssp             EEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC----TTSSEEEEEEEECTTSCCEEEEECCSSSCE
T ss_pred             EEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC----CCCCEEEEEEECCCCCceEEeeccCCCCCc
Confidence            9999  4     5555444444433              4789997    8999999987                    


Q ss_pred             -------------CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC-----eEEEEECCCC
Q 010784          230 -------------EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS-----KVRVWDTSTS  291 (501)
Q Consensus       230 -------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg-----~v~vwd~~~~  291 (501)
                                   .+..|.+||+.++..    ..+.....|...+..++|+| +++.|++++.++     .|++||+.++
T Consensus       220 ~~~~~y~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          220 SKPLYYPMAGTPSHHVTVGIYHLATGKT----VYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             EEEECCCBTTSCCCEEEEEEEETTTTEE----EECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred             eEEeeCCCCCCCCCeeEEEEEECCCCce----EeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence                         446899999988652    01111225677899999998 777888877665     8999999988


Q ss_pred             ccccceecccceecCCCceeeecCC--CeEEEEeC---CcEEEEEcC-CCceEeeeccCCCcEEE-EEEcCCCcEEEEEc
Q 010784          292 SAVRSSCCVGMTSVPGVPVDMKCHE--SMLYIASG---SSVVTIDLR-TMQKVMTPAICKPILHS-FSIMPSKSLICTGG  364 (501)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~i~~~d~~-~~~~~~~~~~~~~~v~~-v~~~~~~~~l~~~~  364 (501)
                      +...................+.+++  +..+++.+   +.+.+|++. +++.+..+..+...+.+ ++|+|+++.|+.++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~  374 (706)
T 2z3z_A          295 RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES  374 (706)
T ss_dssp             CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred             ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence            3222111100000001123455655  54444432   367788776 56667777777777877 79999998776554


Q ss_pred             -CC----c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE-EecCC---CcEEEEeCCCcc
Q 010784          365 -IG----K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT-GGRDD---LRINIWETDTGM  424 (501)
Q Consensus       365 -~d----~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~-~gs~d---g~i~iwd~~~~~  424 (501)
                       .+    . |..||+.+++.       ..+. |...+.+++|+|+ +.++ +++.+   +.|++||+.+++
T Consensus       375 ~~~~~~~~~l~~~d~~~~~~-------~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          375 TEASPLERHFYCIDIKGGKT-------KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SSSCTTCBEEEEEETTCCCC-------EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             cCCCCceEEEEEEEcCCCCc-------eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence             32    3 66677766542       2333 5667899999999 5444 43333   569999998876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=8.6e-20  Score=168.98  Aligned_cols=251  Identities=8%  Similarity=-0.025  Sum_probs=177.3

Q ss_pred             cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceee
Q 010784          177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      .+..+++++.++.|.+||  +++.+..+..+...+ +++|+    ++++++++++. ++.|.+||+.++..     ....
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s----~dg~~l~~~~~~~~~i~~~d~~~~~~-----~~~~   78 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAIT----SDCSNVVVTSDFCQTLVQIETQLEPP-----KVVA   78 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEEC----SSSCEEEEEESTTCEEEEEECSSSSC-----EEEE
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEc----CCCCEEEEEeCCCCeEEEEECCCCce-----eEEe
Confidence            345688888999999999  677777776666677 99997    88886666655 88999999988762     2555


Q ss_pred             ccCCCCceeEEEEeecCCeEEEEEeCCC---eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEE
Q 010784          254 LYGHEKPIKLMSVAGHKSFLLVTISKDS---KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI  330 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  330 (501)
                      +..+..+..+++|+| ++++++++..++   .|.+||+.+++.+.                                   
T Consensus        79 ~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~-----------------------------------  122 (331)
T 3u4y_A           79 IQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFIS-----------------------------------  122 (331)
T ss_dssp             EEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEE-----------------------------------
T ss_pred             cccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEE-----------------------------------
Confidence            566666665599998 677777555543   89999998764321                                   


Q ss_pred             EcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE-c-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-E
Q 010784          331 DLRTMQKVMTPAICKPILHSFSIMPSKSLICTG-G-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-I  405 (501)
Q Consensus       331 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~  405 (501)
                               .+. ......+++|+|+|++++++ . .+. |.+|++.......... ...+ .....+..++|+|+ + +
T Consensus       123 ---------~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~spdg~~l  190 (331)
T 3u4y_A          123 ---------TIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QEFI-SGGTRPFNITFTPDGNFA  190 (331)
T ss_dssp             ---------EEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EEEE-CSSSSEEEEEECTTSSEE
T ss_pred             ---------EEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cccc-cCCCCccceEECCCCCEE
Confidence                     122 23446899999999855544 3 467 9999998643320000 1112 23456789999999 4 6


Q ss_pred             EEEecCCCcEEEEeCCCccc---ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc--------
Q 010784          406 VTGGRDDLRINIWETDTGML---ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC--------  474 (501)
Q Consensus       406 l~~gs~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~--------  474 (501)
                      ++++..++.|.+||+.+++.   +..+..      ...+..++|+|||++|++++. .++.|.+||...+..        
T Consensus       191 ~v~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~~~~~spdg~~l~v~~~-~~~~i~~~d~~~~~~~~~~~~~~  263 (331)
T 3u4y_A          191 FVANLIGNSIGILETQNPENITLLNAVGT------NNLPGTIVVSRDGSTVYVLTE-STVDVFNFNQLSGTLSFVKSFGH  263 (331)
T ss_dssp             EEEETTTTEEEEEECSSTTSCEEEEEEEC------SSCCCCEEECTTSSEEEEECS-SEEEEEEEETTTTEEEEEEEEEC
T ss_pred             EEEeCCCCeEEEEECCCCcccceeeeccC------CCCCceEEECCCCCEEEEEEc-CCCEEEEEECCCCceeeeccccc
Confidence            77777899999999999888   666632      356788999999998877654 467899998654322        


Q ss_pred             ----------------------c-eeecCCCCceeeecccC
Q 010784          475 ----------------------P-VLKHEVQNDSKFWGPQC  492 (501)
Q Consensus       475 ----------------------~-~~s~~~d~~~~~w~~~~  492 (501)
                                            . +++...++.+++|+++.
T Consensus       264 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          264 GLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             CCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             ccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence                                  2 23556677889998764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=1.9e-20  Score=192.32  Aligned_cols=323  Identities=10%  Similarity=-0.024  Sum_probs=212.5

Q ss_pred             ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc---ceeEEEeeccCcCcccccCCCCcCcEEEEeeC----
Q 010784          114 DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA---RITCMRLFPLHETSLFRSEPQRTENVLVTSSC----  186 (501)
Q Consensus       114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----  186 (501)
                      ..++|+|+|.+++++ .++.|++||..++ +....+.+|..   .|.+++|||             ||++|++++.    
T Consensus        19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~Sp-------------Dg~~la~~~~~~~~   83 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADNNIVLYNIETG-QSYTILSNRTMKSVNASNYGLSP-------------DRQFVYLESDYSKL   83 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTSCEEEEESSSC-CEEEEECHHHHHTTTCSEEEECT-------------TSSEEEEEEEEEEC
T ss_pred             CccEECCCCeEEEEc-CCCCEEEEEcCCC-cEEEEEccccccccceeeEEECC-------------CCCeEEEEecCcee
Confidence            477899999877766 4899999999985 55555655544   399999999             8999998876    


Q ss_pred             -----CCceEEec--CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          187 -----DHSIRLWW--KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       187 -----dg~i~vwd--~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                           ++.|++||  .++.+  ..+   ...+..++||    |+|+.|+.+. ++.|++|++.++..     ......++
T Consensus        84 ~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~S----PDG~~la~~~-~~~i~~~~~~~g~~-----~~l~~~~~  150 (719)
T 1z68_A           84 WRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWS----PVGSKLAYVY-QNNIYLKQRPGDPP-----FQITFNGR  150 (719)
T ss_dssp             SSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEEC----SSTTCEEEEE-TTEEEEESSTTSCC-----EECCCCCB
T ss_pred             EEeecceEEEEEECCCCccccceec---CcccccceEC----CCCCEEEEEE-CCeEEEEeCCCCCc-----EEEecCCC
Confidence                 78999999  44432  223   3568889997    8999999886 78999999988753     11111222


Q ss_pred             CCc-----------------eeEEEEeecCCeEEEEEeCCC----------------------------------eEEEE
Q 010784          258 EKP-----------------IKLMSVAGHKSFLLVTISKDS----------------------------------KVRVW  286 (501)
Q Consensus       258 ~~~-----------------v~~l~~~~~~~~~l~s~s~dg----------------------------------~v~vw  286 (501)
                      ...                 ...++|+| +++.|++++.|.                                  .|++|
T Consensus       151 ~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~  229 (719)
T 1z68_A          151 ENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII  229 (719)
T ss_dssp             TTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence            221                 24799998 788888887552                                  78899


Q ss_pred             ECCCCccccceecc--c-ceecCCCceeeecCCCeEEEEe--C-C----cEEEEE----cCCCceEeee----ccCCCcE
Q 010784          287 DTSTSSAVRSSCCV--G-MTSVPGVPVDMKCHESMLYIAS--G-S----SVVTID----LRTMQKVMTP----AICKPIL  348 (501)
Q Consensus       287 d~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~--~-~----~i~~~d----~~~~~~~~~~----~~~~~~v  348 (501)
                      |+.+++........  . .......+..+.++++..+++.  . .    .|.+||    +.+++....+    ..|...+
T Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~  309 (719)
T 1z68_A          230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA  309 (719)
T ss_dssp             ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred             ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence            99887542000100  0 0012334556677777655443  2 1    488899    8777766555    3566666


Q ss_pred             E-----EEEEcCCCcEEEE--EcCCc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC----CC
Q 010784          349 H-----SFSIMPSKSLICT--GGIGK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD----DL  413 (501)
Q Consensus       349 ~-----~v~~~~~~~~l~~--~~~d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~----dg  413 (501)
                      .     .+.|+|||+.++.  ...++   |.+||+..++.       ..+..+...+..+.+... .+++++..    ++
T Consensus       310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-------~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~  382 (719)
T 1z68_A          310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-------IQITSGKWEAINIFRVTQDSLFYSSNEFEEYPG  382 (719)
T ss_dssp             SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-------EECSCSSSCEEEEEEECSSEEEEEESCGGGCTT
T ss_pred             ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-------EecccCceEEEEEEEEeCCEEEEEEecCCCCCc
Confidence            6     7899999985543  33333   77788776542       445555556777666644 66666644    58


Q ss_pred             cEEEEeCCC--cc-cccccccCCCCCCCcceeeeEeeccccEEEEee-cCCCceEEEeeccCCc
Q 010784          414 RINIWETDT--GM-LANSLLCNYPEEADISTGCSAMAVSGCRIVTAS-YGEPGLLQFRDFSNAT  473 (501)
Q Consensus       414 ~i~iwd~~~--~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~d~~g~i~~w~~~~~~  473 (501)
                      ..++|.+..  +. ....+.... .++...+..+.|+|||++++... ......+.+|++.+++
T Consensus       383 ~~~l~~~~~~~g~~~~~~l~~~~-~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          383 RRNIYRISIGSYPPSKKCVTCHL-RKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             CBEEEEEECSSSSCCEEESSTTT-TTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             eEEEEEEeCCCCCCCceeccCcc-CCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence            899998754  32 122331100 12455677899999998877543 2233468888876665

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=4.9e-20  Score=170.97  Aligned_cols=262  Identities=12%  Similarity=0.043  Sum_probs=186.8

Q ss_pred             cEEEEeeCCCceEEec--CCceeeeccCCCC--ceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceee
Q 010784          179 NVLVTSSCDHSIRLWW--KGSCQRCFKGHNG--PVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~--~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      +++++++.++.|.+||  +++.+..+.....  .+..++|+    ++++.+ +++..++.|.+||+.+++.      ...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s----~dg~~l~v~~~~~~~v~~~d~~~~~~------~~~   71 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA----PGGRIAYATVNKSESLVKIDLVTGET------LGR   71 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC----TTSSEEEEEETTTTEEEEEETTTCCE------EEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEc----CCCCEEEEEeCCCCeEEEEECCCCCe------Eee
Confidence            5799999999999999  6666666653221  47889997    788665 5566688999999988763      333


Q ss_pred             ccC-C----CCceeEEEEeecCCeEEEEEe------------CCCeEEEEECCCCccccceecccceecCCCceeeecCC
Q 010784          254 LYG-H----EKPIKLMSVAGHKSFLLVTIS------------KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE  316 (501)
Q Consensus       254 ~~~-~----~~~v~~l~~~~~~~~~l~s~s------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (501)
                      +.. +    ...+..++|+| +++.+++++            .++.|.+||+.+++.....      .....+..+.+++
T Consensus        72 ~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~------~~~~~~~~~~~s~  144 (337)
T 1pby_B           72 IDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF------EAPRQITMLAWAR  144 (337)
T ss_dssp             EECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE------ECCSSCCCEEECT
T ss_pred             EEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEE------eCCCCcceeEECC
Confidence            331 1    22567889997 676777775            5799999999887654322      2233445555555


Q ss_pred             Ce--EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC-------------------------cEE
Q 010784          317 SM--LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG-------------------------KAM  369 (501)
Q Consensus       317 ~~--~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-------------------------~i~  369 (501)
                      +.  ++++ ++.+.+||+.+++....+..+... ..+.|+|++..++..+.+                         .|.
T Consensus       145 dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  222 (337)
T 1pby_B          145 DGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL  222 (337)
T ss_dssp             TSSCEEEE-SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred             CCCEEEEe-CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceE
Confidence            43  4444 679999999999887766654311 123789998866655432                         247


Q ss_pred             EEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784          370 TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       370 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                      +||+.+++..     ...+..+...+.+++|+|+ ++++++  ++.|.+||+.+++.+..+..      ...+.+++|+|
T Consensus       223 ~~d~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~  289 (337)
T 1pby_B          223 TMDLETGEMA-----MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL------PHSYYSVNVST  289 (337)
T ss_dssp             EEETTTCCEE-----EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC------SSCCCEEEECT
T ss_pred             EEeCCCCCce-----EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC------CCceeeEEECC
Confidence            8999886532     2334455667889999999 766665  78999999999988877742      23578899999


Q ss_pred             cccEEEEeecCCCceEEEeeccCCcc
Q 010784          449 SGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       449 ~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      +|++|++++  .++.|.+||+..+..
T Consensus       290 dg~~l~~~~--~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          290 DGSTVWLGG--ALGDLAAYDAETLEK  313 (337)
T ss_dssp             TSCEEEEES--BSSEEEEEETTTCCE
T ss_pred             CCCEEEEEc--CCCcEEEEECcCCcE
Confidence            999999987  569999999987764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=3.7e-20  Score=190.38  Aligned_cols=282  Identities=9%  Similarity=-0.032  Sum_probs=188.3

Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCC---ceEEEEeeecCCCCCCEEEEee
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNG---PVSTLSDKLLGDGSGKILASGG  229 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~---~v~~l~~s~~~~~~~~~l~sg~  229 (501)
                      .+.+++|+|             +|+++++ +.||+|++||  +++....+..|..   .|.+++|+    |+|++|++++
T Consensus        18 ~~~~~~~sp-------------dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S----pDg~~l~~~~   79 (723)
T 1xfd_A           18 HDPEAKWIS-------------DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS----PDREYALFSY   79 (723)
T ss_dssp             CCCCCCBSS-------------SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC----TTSSEEEEEE
T ss_pred             cccccEEcC-------------CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEEC----CCCCEEEEEe
Confidence            366778887             7887766 7899999999  6666666766665   49999997    8999999987


Q ss_pred             CC---------CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          230 ED---------ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       230 ~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      .+         +.|.+||+.++..    ..+.....|...+..++|+| +++.|++++. +.|++||+.+++........
T Consensus        80 ~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~  153 (723)
T 1xfd_A           80 NVEPIYQHSYTGYYVLSKIPHGDP----QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTG  153 (723)
T ss_dssp             SCCCCSSSCCCSEEEEEESSSCCC----EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCC
T ss_pred             cCccceeecceeeEEEEECCCCce----EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCC
Confidence            64         7888999998752    11233344555688899998 7778888876 79999999987653321110


Q ss_pred             cc-e---ec---------CCCceeeecCCCeEEE--Ee-C----------------------------------CcEEEE
Q 010784          301 GM-T---SV---------PGVPVDMKCHESMLYI--AS-G----------------------------------SSVVTI  330 (501)
Q Consensus       301 ~~-~---~~---------~~~~~~~~~~~~~~~~--~~-~----------------------------------~~i~~~  330 (501)
                      .. .   ..         .+....+.+++++..+  +. .                                  ..+.+|
T Consensus       154 ~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~  233 (723)
T 1xfd_A          154 KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI  233 (723)
T ss_dssp             BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred             CCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEE
Confidence            00 0   00         0122456666654333  22 1                                  168899


Q ss_pred             EcCCCceEeeeccC------CCcEEEEEEcCCCcEEEEEc----CCc-EEEEecCCCCCCCCCCCcccccC-cccCe---
Q 010784          331 DLRTMQKVMTPAIC------KPILHSFSIMPSKSLICTGG----IGK-AMTWDIRRSQDAVKPQPMAELDG-HVGSV---  395 (501)
Q Consensus       331 d~~~~~~~~~~~~~------~~~v~~v~~~~~~~~l~~~~----~d~-i~iwd~~~~~~~~~~~~~~~~~~-h~~~v---  395 (501)
                      |+.+++....+..+      ...+.+++|+|||+++++.+    .+. |++||+.+++..      ..+.. +...+   
T Consensus       234 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~------~~~~~~~~~~~~~~  307 (723)
T 1xfd_A          234 GLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT------KKHEDESEAWLHRQ  307 (723)
T ss_dssp             ESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE------EEEEEECSSCCCCC
T ss_pred             ECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce------EEEEeccCCEEecc
Confidence            99988765555543      56789999999999987764    234 999999887643      32222 23333   


Q ss_pred             -EEEEecCC-e-EEEE-ecCCC------cEEEEe-CCCccc--ccccccCCCCCCCccee-eeEeeccccEEEEeecCCC
Q 010784          396 -TQLHMDPY-K-IVTG-GRDDL------RINIWE-TDTGML--ANSLLCNYPEEADISTG-CSAMAVSGCRIVTASYGEP  461 (501)
Q Consensus       396 -~~l~~~~~-~-~l~~-gs~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~s~~~d~~  461 (501)
                       ..++|+|+ + +++. +..++      .|.+|| ..+++.  ...+.     .....+. .++|+|||+.|+..+. .+
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-----~~~~~~~~~~~~spdg~~l~~~~~-~~  381 (723)
T 1xfd_A          308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-----SGDWDVTKILAYDEKGNKIYFLST-ED  381 (723)
T ss_dssp             CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-----CSSSCEEEEEEEETTTTEEEEEES-SS
T ss_pred             CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee-----cCCeEEEeeeEEcCCCCEEEEEEc-CC
Confidence             37899999 4 4443 55677      577777 344431  45552     1122333 4699999999987764 33


Q ss_pred             --ceEEEeeccCC
Q 010784          462 --GLLQFRDFSNA  472 (501)
Q Consensus       462 --g~i~~w~~~~~  472 (501)
                        +.+++|++...
T Consensus       382 ~~~~~~l~~~~~~  394 (723)
T 1xfd_A          382 LPRRRQLYSANTV  394 (723)
T ss_dssp             CTTCCEEEEECSS
T ss_pred             CCcceEEEEEeCC
Confidence              78999998754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=9.1e-19  Score=162.81  Aligned_cols=274  Identities=9%  Similarity=0.078  Sum_probs=177.0

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCe-eeEEEEecc--ccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSI-QNIKIDNFL--SES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV  182 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d-~~i~vw~~~--~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (501)
                      ..+...+.+++|+|+|.++++++.+ +.+.+|++.  ++. +.+..+..+. .+..++|+|             ++++|+
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-------------dg~~l~   99 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-------------QGQFVF   99 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-------------TSSEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-------------CCCEEE
Confidence            4466679999999999988877765 999999987  431 2334444444 789999999             788776


Q ss_pred             Eee-CCCceEEecC--C---ceeeeccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCCcccccccee--e
Q 010784          183 TSS-CDHSIRLWWK--G---SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSGKRGQQALKA--T  253 (501)
Q Consensus       183 s~~-~dg~i~vwd~--~---~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~--~  253 (501)
                      +++ .++.|.+||.  +   ..+..+.. ...+.+++|+    ++++++++++ .++.|.+||+.+...   .....  .
T Consensus       100 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s----~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~  171 (343)
T 1ri6_A          100 VGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANIS----PDNRTLWVPALKQDRICLFTVSDDGH---LVAQDPAE  171 (343)
T ss_dssp             EEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEEC----TTSSEEEEEEGGGTEEEEEEECTTSC---EEEEEEEE
T ss_pred             EEecCCCeEEEEECCCCccccccccccC-CCCceEEEEC----CCCCEEEEecCCCCEEEEEEecCCCc---eeeecccc
Confidence            655 4889999983  2   23333443 3458889997    8898888777 899999999987332   01111  2


Q ss_pred             cc-CCCCceeEEEEeecCCeEE-EEEeCCCeEEEEECCC--CccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784          254 LY-GHEKPIKLMSVAGHKSFLL-VTISKDSKVRVWDTST--SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT  329 (501)
Q Consensus       254 ~~-~~~~~v~~l~~~~~~~~~l-~s~s~dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  329 (501)
                      .. .....+..++|+| +++++ +++..++.|.+||+..  ++.... .                               
T Consensus       172 ~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~-~-------------------------------  218 (343)
T 1ri6_A          172 VTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECV-Q-------------------------------  218 (343)
T ss_dssp             EECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEE-E-------------------------------
T ss_pred             cccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEE-e-------------------------------
Confidence            22 2345778899998 55544 5555899999999964  221000 0                               


Q ss_pred             EEcCCCceEeeec---cCCCcEEEEEEcCCCcEEEE-EcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784          330 IDLRTMQKVMTPA---ICKPILHSFSIMPSKSLICT-GGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-  403 (501)
Q Consensus       330 ~d~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~-~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-  403 (501)
                             ....+.   .....+..++|+|+++++++ +..++ |.+||+......  .+.+..+..+.. +..++|+|+ 
T Consensus       219 -------~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~-~~~~~~s~dg  288 (343)
T 1ri6_A          219 -------TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV--LSKEGFQPTETQ-PRGFNVDHSG  288 (343)
T ss_dssp             -------EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC--EEEEEEEECSSS-CCCEEECTTS
T ss_pred             -------eccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc--eEEeeeecCCCc-cceEEECCCC
Confidence                   000011   11345778999999987764 44666 999999832111  122344444433 889999999 


Q ss_pred             e-EEEEecCCCcEEEEeC--CCcc--cccccccCCCCCCCcceeeeEeecccc
Q 010784          404 K-IVTGGRDDLRINIWET--DTGM--LANSLLCNYPEEADISTGCSAMAVSGC  451 (501)
Q Consensus       404 ~-~l~~gs~dg~i~iwd~--~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~  451 (501)
                      + +++++..++.|.+|++  .+++  .+..+..      .....+++|.++.+
T Consensus       289 ~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~------g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          289 KYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV------GQGPMWVVVNAHEG  335 (343)
T ss_dssp             SEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC------SSSCCEEEEEEEC-
T ss_pred             CEEEEecCCCCeEEEEEEcCCCceeeEcccccc------CCCCeeEEEEcccC
Confidence            5 5555447899999954  4553  3333321      23456777877654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=2.1e-18  Score=161.17  Aligned_cols=239  Identities=9%  Similarity=0.018  Sum_probs=173.2

Q ss_pred             CcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-------CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCC
Q 010784          153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-------DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK  223 (501)
Q Consensus       153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-------dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~  223 (501)
                      ...+..++|+|             +++++++++.       ++.|.+||  +++.+..+.. ...+..++|+    ++++
T Consensus        40 ~~~~~~~~~s~-------------dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s----~dg~  101 (353)
T 3vgz_A           40 GKGAYEMAYSQ-------------QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATIN----NTTQ  101 (353)
T ss_dssp             ESSEEEEEEET-------------TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEE----TTTT
T ss_pred             ccCccceEECC-------------CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEEC----CCCC
Confidence            34678899999             7887777764       56899999  6666666653 3456788887    7888


Q ss_pred             EE-EEeeCCCcEEEEeccCCCccccccceeeccCCCC---------ceeEEEEeecCCeEEEEEe--CCCeEEEEECCCC
Q 010784          224 IL-ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK---------PIKLMSVAGHKSFLLVTIS--KDSKVRVWDTSTS  291 (501)
Q Consensus       224 ~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~v~~l~~~~~~~~~l~s~s--~dg~v~vwd~~~~  291 (501)
                      ++ +++..++.|.+||..+++.      ...+..+..         .+.++.++| +++.+++++  .++.|.+||..++
T Consensus       102 ~l~v~~~~~~~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~  174 (353)
T 3vgz_A          102 TLWFGNTVNSAVTAIDAKTGEV------KGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNI  174 (353)
T ss_dssp             EEEEEETTTTEEEEEETTTCCE------EEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTT
T ss_pred             EEEEEecCCCEEEEEeCCCCee------EEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCC
Confidence            55 4555679999999998763      444443322         268899998 555555544  4788999998876


Q ss_pred             ccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEE
Q 010784          292 SAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMT  370 (501)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~i  370 (501)
                      +..                                            ..+..+...+.+++|+|+++++++++.++ |.+
T Consensus       175 ~~~--------------------------------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~  210 (353)
T 3vgz_A          175 KLK--------------------------------------------TAIQNTGKMSTGLALDSEGKRLYTTNADGELIT  210 (353)
T ss_dssp             EEE--------------------------------------------EEECCCCTTCCCCEEETTTTEEEEECTTSEEEE
T ss_pred             ceE--------------------------------------------EEecCCCCccceEEECCCCCEEEEEcCCCeEEE
Confidence            432                                            22222344567889999999999888777 999


Q ss_pred             EecCCCCCCCCCCCccccc----CcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeee
Q 010784          371 WDIRRSQDAVKPQPMAELD----GHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCS  444 (501)
Q Consensus       371 wd~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  444 (501)
                      ||..+++..      ..+.    ++...+..++|+|+  .++++...++.|.+||..+++.+..+....       ...+
T Consensus       211 ~d~~~~~~~------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~  277 (353)
T 3vgz_A          211 IDTADNKIL------SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-------SLAV  277 (353)
T ss_dssp             EETTTTEEE------EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-------CCCE
T ss_pred             EECCCCeEE------EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-------CceE
Confidence            999987643      3332    24556888999998  466666667999999999999888875321       2568


Q ss_pred             EeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          445 AMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       445 ~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      +|+|+|+++++++. .++.|.+||...+..
T Consensus       278 ~~s~dg~~l~v~~~-~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          278 LFNPARNEAYVTHR-QAGKVSVIDAKSYKV  306 (353)
T ss_dssp             EEETTTTEEEEEET-TTTEEEEEETTTTEE
T ss_pred             EECCCCCEEEEEEC-CCCeEEEEECCCCeE
Confidence            99999997766654 579999999876553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=1.2e-18  Score=162.47  Aligned_cols=273  Identities=8%  Similarity=0.025  Sum_probs=180.7

Q ss_pred             CCCCcCcEEEEeeCCCceEEec--CCceeeeccCCC-CceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccc
Q 010784          173 EPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHN-GPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       173 ~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~-~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~  248 (501)
                      .+++++.++++++.+++|.+||  +++.+..+..+. ..+..++|+    ++++++ +++..++.|.+||+.+++.    
T Consensus         6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s----~dg~~~~v~~~~~~~i~~~d~~t~~~----   77 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA----PDNRTAYVLNNHYGDIYGIDLDTCKN----   77 (349)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC----TTSSEEEEEETTTTEEEEEETTTTEE----
T ss_pred             cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEEC----CCCCEEEEEeCCCCcEEEEeCCCCcE----
Confidence            3445889999999999999999  666666665443 257788986    788765 4556789999999988753    


Q ss_pred             cceeeccCC------CCceeEEEEeecCCeEEEEEeCC------------CeEEEEECCCCccccceecccceecCCCce
Q 010784          249 ALKATLYGH------EKPIKLMSVAGHKSFLLVTISKD------------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPV  310 (501)
Q Consensus       249 ~~~~~~~~~------~~~v~~l~~~~~~~~~l~s~s~d------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  310 (501)
                        ...+..+      ...+..++|+| +++++++++.+            +.|.+||+.+++.....   ........+.
T Consensus        78 --~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~  151 (349)
T 1jmx_B           78 --TFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV---RTFPMPRQVY  151 (349)
T ss_dssp             --EEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS---EEEECCSSCC
T ss_pred             --EEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCcccccee---eeccCCCccc
Confidence              3333322      22377889998 67778777755            89999999886432211   1122233455


Q ss_pred             eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC------------------------cEEEEEEcCCCcEEEEEcCC
Q 010784          311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP------------------------ILHSFSIMPSKSLICTGGIG  366 (501)
Q Consensus       311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------------~v~~v~~~~~~~~l~~~~~d  366 (501)
                      ++.++++..+++.+..+.+||+.+++.+..+..+..                        ....+++++++........+
T Consensus       152 ~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  231 (349)
T 1jmx_B          152 LMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  231 (349)
T ss_dssp             CEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             ceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence            555665544555667899999999988776654320                        34456666654322111111


Q ss_pred             c--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC-C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784          367 K--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG  442 (501)
Q Consensus       367 ~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  442 (501)
                      .  +..+|..+++..     ...+..+...+..++++| + ++++++  ++.|.+||+.+++.+..+..      ...+.
T Consensus       232 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------~~~~~  298 (349)
T 1jmx_B          232 LYGYLSVDLKTGKTH-----TQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL------DHTYY  298 (349)
T ss_dssp             EEEEEEEETTTCCEE-----EEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC------SSCCC
T ss_pred             ceeEEEEeccCCcEE-----ecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC------CCCcc
Confidence            1  223555544321     112223455788999999 8 666665  88999999999988877742      23467


Q ss_pred             eeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          443 CSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       443 ~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      .++|+|+|++|++++  .++.|.+||....+.
T Consensus       299 ~~~~s~dg~~l~~~~--~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          299 CVAFDKKGDKLYLGG--TFNDLAVFNPDTLEK  328 (349)
T ss_dssp             EEEECSSSSCEEEES--BSSEEEEEETTTTEE
T ss_pred             ceEECCCCCEEEEec--CCCeEEEEeccccce
Confidence            899999999988876  559999999987654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=1.9e-18  Score=161.17  Aligned_cols=282  Identities=10%  Similarity=-0.013  Sum_probs=183.9

Q ss_pred             eEEeeCCcEEEeecCCeeeEEEEecccccccceecccCC-cceeEEEeeccCcCcccccCCCCcCcEE-EEeeCCCceEE
Q 010784          115 HILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHK-ARITCMRLFPLHETSLFRSEPQRTENVL-VTSSCDHSIRL  192 (501)
Q Consensus       115 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~v  192 (501)
                      .+++++++.++++++.++.|.+||..++ +....+..+. ..+..++|+|             +++++ +++..++.|.+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~s~-------------dg~~~~v~~~~~~~i~~   69 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASD-TVYKSCVMPDKFGPGTAMMAP-------------DNRTAYVLNNHYGDIYG   69 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTT-EEEEEEECSSCCSSCEEEECT-------------TSSEEEEEETTTTEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCC-cEEEEEecCCCCCCceeEECC-------------CCCEEEEEeCCCCcEEE
Confidence            4578889999999999999999999885 6666665443 2578899999             77754 56667899999


Q ss_pred             ec--CCceeeeccCC------CCceEEEEeeecCCCCCCEEEEeeCC------------CcEEEEeccCCCcccccccee
Q 010784          193 WW--KGSCQRCFKGH------NGPVSTLSDKLLGDGSGKILASGGED------------ATVRLWSLSSSGKRGQQALKA  252 (501)
Q Consensus       193 wd--~~~~~~~~~~h------~~~v~~l~~s~~~~~~~~~l~sg~~d------------g~i~iwd~~~~~~~~~~~~~~  252 (501)
                      ||  +++.+..+..+      ...+.+++|+    ++|+++++++.+            +.|.+||+.+++.   ...+.
T Consensus        70 ~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~  142 (349)
T 1jmx_B           70 IDLDTCKNTFHANLSSVPGEVGRSMYSFAIS----PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---AKPVR  142 (349)
T ss_dssp             EETTTTEEEEEEESCCSTTEEEECSSCEEEC----TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---BCCSE
T ss_pred             EeCCCCcEEEEEEcccccccccccccceEEC----CCCCEEEEEcccccccccccccCCCeEEEEECCCccc---cceee
Confidence            99  56666555432      2337788997    899999998865            8999999987542   01122


Q ss_pred             eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceec-----C-------C-------Cceeee
Q 010784          253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV-----P-------G-------VPVDMK  313 (501)
Q Consensus       253 ~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~-----~-------~-------~~~~~~  313 (501)
                      .+. +...+.+++|+| +++ +++++.  .|.+||+.+++.............     .       .       .+..+.
T Consensus       143 ~~~-~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (349)
T 1jmx_B          143 TFP-MPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA  217 (349)
T ss_dssp             EEE-CCSSCCCEEECT-TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred             ecc-CCCcccceeECC-CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence            333 334688899998 566 555543  499999998875443221100000     0       0       001111


Q ss_pred             cCCCeEEE---EeCC-cEEEEEcCCCceE-eeeccCCCcEEEEEEcC-CCcEEEEEcCCcEEEEecCCCCCCCCCCCccc
Q 010784          314 CHESMLYI---ASGS-SVVTIDLRTMQKV-MTPAICKPILHSFSIMP-SKSLICTGGIGKAMTWDIRRSQDAVKPQPMAE  387 (501)
Q Consensus       314 ~~~~~~~~---~~~~-~i~~~d~~~~~~~-~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~  387 (501)
                      +.++....   ..+. .+..+|..+++.. ..+..+...+.+++++| ++++++++ .+.|.+||+.+++..      ..
T Consensus       218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~------~~  290 (349)
T 1jmx_B          218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLI------KA  290 (349)
T ss_dssp             EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEE------EE
T ss_pred             ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEE------EE
Confidence            11100000   0000 1223555554432 22233566788999999 99999988 444999999986543      34


Q ss_pred             ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccc
Q 010784          388 LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       388 ~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                      +.. ...+.+++|+|+ +.+++++.++.|++||+.+++.+..+.
T Consensus       291 ~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          291 ANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             EEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            432 345779999999 545555688999999999999888874

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=6.1e-19  Score=176.41  Aligned_cols=230  Identities=13%  Similarity=0.111  Sum_probs=167.1

Q ss_pred             CcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CCceEEec-CCceeeeccCCC-CceEEEEeeecCCCCCCEEEEee
Q 010784          153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DHSIRLWW-KGSCQRCFKGHN-GPVSTLSDKLLGDGSGKILASGG  229 (501)
Q Consensus       153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~vwd-~~~~~~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg~  229 (501)
                      ..+|++++|+|             ||+.|++++. ||+++||+ .+.....+..|. ..+..+.|+    |+ +++++++
T Consensus        21 ~~~~~~~~~~~-------------DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~s----pd-~~l~~~~   82 (582)
T 3o4h_A           21 AVEKYSLQGVV-------------DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYG----VG-RVILVRD   82 (582)
T ss_dssp             HSCEEEEEEEE-------------TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTT----CS-EEEEEEE
T ss_pred             ccchheeecCC-------------CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCC----CC-eEEEEec
Confidence            56799999999             8999999887 99999998 444445555555 689999997    66 7888776


Q ss_pred             C---CCcEEEEeccC--CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784          230 E---DATVRLWSLSS--SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       230 ~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                      .   +...++|.++.  ...     .. .+.... .+...+|+|+....+++.+.++.+.+||+.+++...         
T Consensus        83 ~~~g~~~~~l~~~~~~~~g~-----~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~---------  146 (582)
T 3o4h_A           83 VSKGAEQHALFKVNTSRPGE-----EQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE---------  146 (582)
T ss_dssp             CSTTSCCEEEEEEETTSTTC-----CE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE---------
T ss_pred             cCCCCcceEEEEEeccCCCc-----cc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE---------
Confidence            5   55667776654  322     12 222222 344668888544444454555556699987764211         


Q ss_pred             cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC----c-EEEEecCCCCCC
Q 010784          305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG----K-AMTWDIRRSQDA  379 (501)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----~-i~iwd~~~~~~~  379 (501)
                                                          +..+..  .+++|+|||++|++++.+    . |++||+.+++. 
T Consensus       147 ------------------------------------l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-  187 (582)
T 3o4h_A          147 ------------------------------------LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-  187 (582)
T ss_dssp             ------------------------------------EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-
T ss_pred             ------------------------------------eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-
Confidence                                                111122  688999999999987755    6 99999988653 


Q ss_pred             CCCCCcccccCcccCeEEEEecCC-eEEEEecCCC--cEEEEeCCCcccccccccCCCCCCCcceeeeE--------eec
Q 010784          380 VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL--RINIWETDTGMLANSLLCNYPEEADISTGCSA--------MAV  448 (501)
Q Consensus       380 ~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~  448 (501)
                            ..+..|.+.+..++|+|+ +.|+++..++  .|++||+.+++.. .+     ..+...+..++        |+|
T Consensus       188 ------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~sp  255 (582)
T 3o4h_A          188 ------RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL-----ELPSKDFSSYRPTAITWLGYLP  255 (582)
T ss_dssp             ------EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC-----CCSCSHHHHHCCSEEEEEEECT
T ss_pred             ------eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec-----cCCCcChhhhhhccccceeEcC
Confidence                  466778888999999999 7777777888  8999999988877 55     34556677777        999


Q ss_pred             cccEEEEeecCCCceEEEeec
Q 010784          449 SGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       449 ~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      ||.++++++  .++.+++|++
T Consensus       256 dg~~~~~~~--~~g~~~l~~~  274 (582)
T 3o4h_A          256 DGRLAVVAR--REGRSAVFID  274 (582)
T ss_dssp             TSCEEEEEE--ETTEEEEEET
T ss_pred             CCcEEEEEE--cCCcEEEEEE
Confidence            998888888  5699999998

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.82  E-value=5.9e-18  Score=157.73  Aligned_cols=258  Identities=7%  Similarity=0.063  Sum_probs=169.0

Q ss_pred             EEecCCCCceEEeeCCcEEEeecC--CeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784          106 FYSVAKPHDHILLDNNDIFSTQGS--SIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV  182 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~~~g~--~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (501)
                      .......+..++++|+|++++++.  .++.|.+|++.++. +.+..+..|...+..++|+|             +|++|+
T Consensus        35 ~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-------------dg~~l~  101 (347)
T 3hfq_A           35 LLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-------------ARQLVY  101 (347)
T ss_dssp             EEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-------------TTTEEE
T ss_pred             eeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-------------CCCEEE
Confidence            344556689999999999444443  27999999997642 24445556788899999999             888888


Q ss_pred             Eee-CCCceEEec-C--Cc--eeeeccC---------CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc
Q 010784          183 TSS-CDHSIRLWW-K--GS--CQRCFKG---------HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ  247 (501)
Q Consensus       183 s~~-~dg~i~vwd-~--~~--~~~~~~~---------h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  247 (501)
                      +++ .++.|.+|+ .  +.  .+..+..         +...+.+++|+    ++|++++++..++.|.+|++.....   
T Consensus       102 ~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s----pdg~l~v~~~~~~~v~~~~~~~~g~---  174 (347)
T 3hfq_A          102 SANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT----PDNRLAVIDLGSDKVYVYNVSDAGQ---  174 (347)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC----TTSCEEEEETTTTEEEEEEECTTSC---
T ss_pred             EEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC----CCCcEEEEeCCCCEEEEEEECCCCc---
Confidence            877 689999998 2  22  2222221         12348889997    7888777777788999999983221   


Q ss_pred             ccceeeccC-CCCceeEEEEeecCCe-EEEEEeCCCeEEEEECCC--CccccceecccceecCCCceeeecCCCeEEEEe
Q 010784          248 QALKATLYG-HEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTST--SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS  323 (501)
Q Consensus       248 ~~~~~~~~~-~~~~v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (501)
                      ......+.. ....+..++|+| +++ +++++..++.|.+|++..  ++....    .                      
T Consensus       175 ~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~----~----------------------  227 (347)
T 3hfq_A          175 LSEQSVLTMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQL----G----------------------  227 (347)
T ss_dssp             EEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEE----E----------------------
T ss_pred             EEEeeeEEcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEe----e----------------------
Confidence            111222222 233577899998 565 555567789999999874  321000    0                      


Q ss_pred             CCcEEEEEcCCCceEeeec---cCCCcEEEEEEcCCCcEEEE-EcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784          324 GSSVVTIDLRTMQKVMTPA---ICKPILHSFSIMPSKSLICT-GGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL  398 (501)
Q Consensus       324 ~~~i~~~d~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~-~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  398 (501)
                                   .+....   .....+..++|+|+|++|++ ...++ |.+|++.....   ...+..+..+...+..+
T Consensus       228 -------------~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~---~~~~~~~~~~~~~~~~~  291 (347)
T 3hfq_A          228 -------------IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH---LTLIQQISTEGDFPRDF  291 (347)
T ss_dssp             -------------EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC---EEEEEEEECSSSCCCEE
T ss_pred             -------------eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc---EEEeEEEecCCCCcCeE
Confidence                         000000   01245889999999997754 44556 99999974221   12335555556678999


Q ss_pred             EecCC-e-EEEEecCCCcEEEE--eCCCcccc
Q 010784          399 HMDPY-K-IVTGGRDDLRINIW--ETDTGMLA  426 (501)
Q Consensus       399 ~~~~~-~-~l~~gs~dg~i~iw--d~~~~~~~  426 (501)
                      +|+|+ + +++++..++.|.+|  |..++++.
T Consensus       292 ~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          292 DLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            99999 5 45555456899999  55566544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=4.5e-17  Score=152.62  Aligned_cols=289  Identities=11%  Similarity=0.088  Sum_probs=177.6

Q ss_pred             eCCcEEEeec----CCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC----Cc
Q 010784          119 DNNDIFSTQG----SSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD----HS  189 (501)
Q Consensus       119 ~~~~~~~~~g----~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----g~  189 (501)
                      .++..++..|    +.++.|.+|.+... .+.......|...+..++|+|             ++++|++++.+    +.
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~sp-------------dg~~l~~~~~~~~~~~~   76 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSA-------------DGKFVYSVNEFSKDQAA   76 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECT-------------TSSEEEEEECCSSTTCE
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECC-------------CCCEEEEEEccCCCCCc
Confidence            3344455555    34678999977531 122221112677788899999             88999998876    79


Q ss_pred             eEEec--C--Cce--eeeccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCCccccccceeecc-------
Q 010784          190 IRLWW--K--GSC--QRCFKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSGKRGQQALKATLY-------  255 (501)
Q Consensus       190 i~vwd--~--~~~--~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~-------  255 (501)
                      |.+|+  .  +..  +.....+......+++      ++++|++++ .++.|.+|++................       
T Consensus        77 v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~------dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~  150 (361)
T 3scy_A           77 VSAFAFDKEKGTLHLLNTQKTMGADPCYLTT------NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKE  150 (361)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSSCEEEEEE------CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTT
T ss_pred             EEEEEEeCCCCcEEEeeEeccCCCCcEEEEE------CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcc
Confidence            99997  2  332  2333345556666664      566666665 68899999997644311111111111       


Q ss_pred             -CCCCceeEEEEeecCCe-EEEEEeCCCeEEEEECCCCcc------ccceecccceecCCCceeeecCCCeEEEEeCCcE
Q 010784          256 -GHEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTSTSSA------VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV  327 (501)
Q Consensus       256 -~~~~~v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  327 (501)
                       .+...+.+++|+| +++ ++++...++.|.+|++.....      +...                              
T Consensus       151 ~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~------------------------------  199 (361)
T 3scy_A          151 RQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK------------------------------  199 (361)
T ss_dssp             TCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE------------------------------
T ss_pred             ccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec------------------------------
Confidence             1223457899998 565 445555689999999875431      0000                              


Q ss_pred             EEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e
Q 010784          328 VTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K  404 (501)
Q Consensus       328 ~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~  404 (501)
                             +........+...+..++|+|+|+++++++ .++ |.+||+.+++... ...+.....+......++|+|+ +
T Consensus       200 -------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~-~~~~~~~~~~~~~~~~i~~spdg~  271 (361)
T 3scy_A          200 -------GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE-IQTVAADTVNAQGSGDIHLSPDGK  271 (361)
T ss_dssp             -------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE-EEEEESCSSCCCCEEEEEECTTSS
T ss_pred             -------ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE-eEEEecCCCCCCCcccEEECCCCC
Confidence                   000001112345578899999999877766 456 9999998654210 0111222333455789999999 6


Q ss_pred             EE-EEecC-CCcEEEEeCC--Ccc--cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          405 IV-TGGRD-DLRINIWETD--TGM--LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       405 ~l-~~gs~-dg~i~iwd~~--~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      ++ ++... ++.|.+|++.  +++  .+..+.     . ...+..++|+|||++|++++. .++.|.+|++...
T Consensus       272 ~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-----~-g~~~~~~~~spdg~~l~~~~~-~~~~v~v~~~d~~  338 (361)
T 3scy_A          272 YLYASNRLKADGVAIFKVDETNGTLTKVGYQL-----T-GIHPRNFIITPNGKYLLVACR-DTNVIQIFERDQA  338 (361)
T ss_dssp             EEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-----C-SSCCCEEEECTTSCEEEEEET-TTTEEEEEEECTT
T ss_pred             EEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-----C-CCCCceEEECCCCCEEEEEEC-CCCCEEEEEEECC
Confidence            55 55544 5899999996  344  333332     1 345778999999999998875 4689999877643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=3.5e-18  Score=161.87  Aligned_cols=284  Identities=6%  Similarity=-0.063  Sum_probs=182.9

Q ss_pred             eEEeeCCcEEEeecCC-ee--eEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          115 HILLDNNDIFSTQGSS-IQ--NIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       115 ~~~~~~~~~~~~~g~~-d~--~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      ..+|+|||++++.++. ++  .+.+||+.++ +......+|...+..+.|+|             +|+.|+.++.++.|+
T Consensus        40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~sp-------------dg~~l~~~~~~~~l~  105 (388)
T 3pe7_A           40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-VATQLTEGRGDNTFGGFLSP-------------DDDALFYVKDGRNLM  105 (388)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTTC-EEEECCCSSCBCSSSCEECT-------------TSSEEEEEETTTEEE
T ss_pred             CccCCCCCCEEEEEEcCCCCceEEEEeCCCC-ceEEeeeCCCCCccceEEcC-------------CCCEEEEEeCCCeEE
Confidence            3789999999988776 66  4777788774 66666667777776788999             899999999999999


Q ss_pred             Eec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEE----------------------eeCCCcEEEEeccCCCcccc
Q 010784          192 LWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILAS----------------------GGEDATVRLWSLSSSGKRGQ  247 (501)
Q Consensus       192 vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~s----------------------g~~dg~i~iwd~~~~~~~~~  247 (501)
                      +||  +++....+..+...+....|..  ++++.+++.                      ...++.|.+||+.+++    
T Consensus       106 ~~d~~~g~~~~~~~~~~~~~~~~~~~~--~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~----  179 (388)
T 3pe7_A          106 RVDLATLEENVVYQVPAEWVGYGTWVA--NSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE----  179 (388)
T ss_dssp             EEETTTCCEEEEEECCTTEEEEEEEEE--CTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC----
T ss_pred             EEECCCCcceeeeechhhcccccceeE--CCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc----
Confidence            999  5555555555555554444421  378888774                      2345789999998875    


Q ss_pred             ccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEE
Q 010784          248 QALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYI  321 (501)
Q Consensus       248 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (501)
                         ...+..+...+..+.|+|.+++.|+.++.+      ..|.++|...++.                            
T Consensus       180 ---~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----------------------------  228 (388)
T 3pe7_A          180 ---STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM----------------------------  228 (388)
T ss_dssp             ---EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC----------------------------
T ss_pred             ---eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce----------------------------
Confidence               344445667788999997346666666543      2566666654421                            


Q ss_pred             EeCCcEEEEEcCCCceEeeeccCC--CcEEEEEEcCCCcEEEEEcC-----Cc-EEEEecCCCCCCCCCCCcccccCccc
Q 010784          322 ASGSSVVTIDLRTMQKVMTPAICK--PILHSFSIMPSKSLICTGGI-----GK-AMTWDIRRSQDAVKPQPMAELDGHVG  393 (501)
Q Consensus       322 ~~~~~i~~~d~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~-----d~-i~iwd~~~~~~~~~~~~~~~~~~h~~  393 (501)
                                       ..+..+.  ..+..+.|+|||+.|+..+.     +. |++||+.+++..    .+..+.++..
T Consensus       229 -----------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~~~~~~  287 (388)
T 3pe7_A          229 -----------------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR----QLTSMPACSH  287 (388)
T ss_dssp             -----------------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE----EEEEECCEEE
T ss_pred             -----------------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE----EEEcCCCcee
Confidence                             1111222  24778899999997765442     23 999999987631    2233333111


Q ss_pred             C---eEEEEecCC-eEEE-Ee--------cCCCcEEEEeCCCcccccccccCCC------CCCCcceeeeEeeccccEEE
Q 010784          394 S---VTQLHMDPY-KIVT-GG--------RDDLRINIWETDTGMLANSLLCNYP------EEADISTGCSAMAVSGCRIV  454 (501)
Q Consensus       394 ~---v~~l~~~~~-~~l~-~g--------s~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~  454 (501)
                      .   ...+.|+|+ +.++ +.        ..+..|++||+.+++.. .+..+..      ......+..++|+|||+.|+
T Consensus       288 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~  366 (388)
T 3pe7_A          288 LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQIL  366 (388)
T ss_dssp             EEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEE
T ss_pred             eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEE
Confidence            1   112368888 4444 22        45678999999887653 3321110      00011467889999999988


Q ss_pred             EeecCCCceEEEeeccCC
Q 010784          455 TASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       455 s~~~d~~g~i~~w~~~~~  472 (501)
                      .++. .+|...+|.+.-.
T Consensus       367 ~~s~-~~g~~~l~~~~l~  383 (388)
T 3pe7_A          367 FTSD-VHGKPALYLATLP  383 (388)
T ss_dssp             EEEC-TTSSCEEEEEECC
T ss_pred             EEec-CCCceeEEEEECC
Confidence            8764 4677777766543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=1.9e-16  Score=148.41  Aligned_cols=271  Identities=11%  Similarity=0.058  Sum_probs=169.2

Q ss_pred             cCCCCceEEeeCCcEEEeecCCe----eeEEEEecccc-c--ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSI----QNIKIDNFLSE-S--YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d----~~i~vw~~~~~-~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      +...+..++++|+|.++++++.+    +.+.+|++... .  +.+.....+......+++ .              +++|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-d--------------g~~l  112 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-N--------------GKNI  112 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-C--------------SSEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-C--------------CCEE
Confidence            56678999999999988888775    89999998752 1  233334445556667776 2              4555


Q ss_pred             EEee-CCCceEEec--CCceeeec------c--------CCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCC
Q 010784          182 VTSS-CDHSIRLWW--KGSCQRCF------K--------GHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSG  243 (501)
Q Consensus       182 ~s~~-~dg~i~vwd--~~~~~~~~------~--------~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~  243 (501)
                      ++++ .++.|.+|+  ....+..+      .        .+...+.+++|+    |+|+++++++ .++.|.+|+++...
T Consensus       113 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~v~v~~~~~~~  188 (361)
T 3scy_A          113 VTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT----PDGKYLLADDLGTDQIHKFNINPNA  188 (361)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC----TTSSEEEEEETTTTEEEEEEECTTC
T ss_pred             EEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC----CCCCEEEEEeCCCCEEEEEEEcCCC
Confidence            5554 688999998  22222111      1        123345889997    8998666555 57899999988643


Q ss_pred             c----c-cccc--ceeeccCCCCceeEEEEeecCCeEEEEEe-CCCeEEEEECCCCccccceecccceecCCCceeeecC
Q 010784          244 K----R-GQQA--LKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH  315 (501)
Q Consensus       244 ~----~-~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (501)
                      .    . ....  .......+......++|+| +++++++++ .++.|.+||+.+++....                   
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~-------------------  248 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEI-------------------  248 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEE-------------------
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEe-------------------
Confidence            1    0 0000  0111223445678899998 666666655 689999999886532110                   


Q ss_pred             CCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC--c-EEEEecCC--CCCCCCCCCcccccC
Q 010784          316 ESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG--K-AMTWDIRR--SQDAVKPQPMAELDG  390 (501)
Q Consensus       316 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d--~-i~iwd~~~--~~~~~~~~~~~~~~~  390 (501)
                                          ..+.....+......++|+|+|++|+++..+  + |.+|++..  ++.    ..+..+..
T Consensus       249 --------------------~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~----~~~~~~~~  304 (361)
T 3scy_A          249 --------------------QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL----TKVGYQLT  304 (361)
T ss_dssp             --------------------EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE----EEEEEEEC
T ss_pred             --------------------EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE----EEeeEecC
Confidence                                0011112233456899999999988766643  5 99999963  221    12233333


Q ss_pred             cccCeEEEEecCC-e-EEEEecCCCcEEEEeC--CCcccccccccCCCCCCCcceeeeEee
Q 010784          391 HVGSVTQLHMDPY-K-IVTGGRDDLRINIWET--DTGMLANSLLCNYPEEADISTGCSAMA  447 (501)
Q Consensus       391 h~~~v~~l~~~~~-~-~l~~gs~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~s  447 (501)
                       ...+..++|+|+ + +++++..++.|.+|++  .+++......    ..+...+.++.|.
T Consensus       305 -g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~----~~~~~~p~~v~~~  360 (361)
T 3scy_A          305 -GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK----DIKVDKPVCLKFV  360 (361)
T ss_dssp             -SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC----CEECSSEEEEEEE
T ss_pred             -CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce----eeeCCCCeEEEEc
Confidence             456889999999 5 4445447899999654  5666544331    1223457777775

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=1.8e-17  Score=170.31  Aligned_cols=312  Identities=10%  Similarity=-0.048  Sum_probs=193.1

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcce-----eEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARI-----TCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V-----~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      ..++.|+++|.+++++  |+.|++||+.++ +....+.+|....     ..++|||             ||++|+.++.+
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sp-------------dg~~l~~~~~~   82 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYG-NSSVFLENSTFDEFGHSINDYSISP-------------DGQFILLEYNY   82 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTC-CEEEEECTTTTTTCCSCCCEEEECT-------------TSSEEEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCC-ceEEEEechhhhhhcccccceEECC-------------CCCEEEEEECC
Confidence            5689999999999997  899999999986 5566677776432     3467788             89999999876


Q ss_pred             ---------CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          188 ---------HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       188 ---------g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                               +.+.+|| .+.....+..|.+.+...+||    |+|+.|+.+. |+.|++|++.++..     ...+..++
T Consensus        83 ~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~S----PdG~~la~~~-~~~i~~~~~~~~~~-----~~lt~~g~  152 (740)
T 4a5s_A           83 VKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWS----PVGHKLAYVW-NNDIYVKIEPNLPS-----YRITWTGK  152 (740)
T ss_dssp             EECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEEC----SSTTCEEEEE-TTEEEEESSTTSCC-----EECCSCCB
T ss_pred             eeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEEC----CCCCEEEEEE-CCeEEEEECCCCce-----EEEcCCCC
Confidence                     4556999 444455677788889999998    8999999884 68999999988753     11122233


Q ss_pred             CCce-----------------eEEEEeecCCeEEEEEeCCC-eEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784          258 EKPI-----------------KLMSVAGHKSFLLVTISKDS-KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML  319 (501)
Q Consensus       258 ~~~v-----------------~~l~~~~~~~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (501)
                      ...+                 ..+.|+| +++.|+.++.|. .+.+|++.......        ........+.+...+.
T Consensus       153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~--------~~~~~~~~~~yp~~G~  223 (740)
T 4a5s_A          153 EDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDES--------LQYPKTVRVPYPKAGA  223 (740)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTT--------CSSCEEEEEECCBTTS
T ss_pred             ccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCC--------CCCCcceeecCCCCcC
Confidence            2222                 3588998 777787776554 48888764321100        0000001111100000


Q ss_pred             EEEeCCcEEEEEcCC---Cc--eEeeec------cCCCcEEEEEEcCCCcEEEEEc----CCc-EEEEecCCCC----CC
Q 010784          320 YIASGSSVVTIDLRT---MQ--KVMTPA------ICKPILHSFSIMPSKSLICTGG----IGK-AMTWDIRRSQ----DA  379 (501)
Q Consensus       320 ~~~~~~~i~~~d~~~---~~--~~~~~~------~~~~~v~~v~~~~~~~~l~~~~----~d~-i~iwd~~~~~----~~  379 (501)
                      . .....+.+||+.+   ++  ....+.      +|...+..++|+|||++++...    .+. |++||+.+++    +.
T Consensus       224 ~-~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~  302 (740)
T 4a5s_A          224 V-NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL  302 (740)
T ss_dssp             C-CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred             c-CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence            0 0001689999998   73  222333      3777899999999999766543    234 9999999876    21


Q ss_pred             CCCCCcccc--cCcccCeE-----EEEecCC-eEEE-Eec-CCC--cEEEEeCCCcccccccccCCCCCCCcceeeeEee
Q 010784          380 VKPQPMAEL--DGHVGSVT-----QLHMDPY-KIVT-GGR-DDL--RINIWETDTGMLANSLLCNYPEEADISTGCSAMA  447 (501)
Q Consensus       380 ~~~~~~~~~--~~h~~~v~-----~l~~~~~-~~l~-~gs-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s  447 (501)
                          .+..+  .+|...|.     ...|+|+ +.++ ..+ .+|  .|++||+.+++.....     .+ ...+..+. .
T Consensus       303 ----~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT-----~g-~~~v~~~~-~  371 (740)
T 4a5s_A          303 ----VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT-----KG-TWEVIGIE-A  371 (740)
T ss_dssp             ----GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC-----CS-SSCEEEEE-E
T ss_pred             ----EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc-----cC-CEEEEEEE-E
Confidence                11222  44555554     7889999 5433 333 344  5888888766554333     11 23344432 2


Q ss_pred             ccccEEEEeec---CCCceEEEeeccC
Q 010784          448 VSGCRIVTASY---GEPGLLQFRDFSN  471 (501)
Q Consensus       448 ~~g~~l~s~~~---d~~g~i~~w~~~~  471 (501)
                      +|++.|+..+.   +..+...+|.+..
T Consensus       372 ~d~~~i~f~~~~~~~~~~~~~ly~v~~  398 (740)
T 4a5s_A          372 LTSDYLYYISNEYKGMPGGRNLYKIQL  398 (740)
T ss_dssp             ECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred             EeCCEEEEEEecCCCCCceeEEEEEEC
Confidence            44665554432   1234556665543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.78  E-value=1.6e-16  Score=161.52  Aligned_cols=284  Identities=10%  Similarity=-0.055  Sum_probs=185.3

Q ss_pred             cCCCCceEEeeCCcEEEeec--CCeeeEEEEecccccccceecccCCccee---------EEEee--ccCcCcccccCCC
Q 010784          109 VAKPHDHILLDNNDIFSTQG--SSIQNIKIDNFLSESYYRATLSDHKARIT---------CMRLF--PLHETSLFRSEPQ  175 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g--~~d~~i~vw~~~~~~~~~~~~~~h~~~V~---------~~~~~--~~~~~~~~~~~~~  175 (501)
                      +...+..+++++++.+++.+  +.++...||....+ .....+..|...+.         ...|+  |            
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP------------   88 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD-GAEESALPAPWNVRNRVFEYSGFPWAGVPRP------------   88 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT-SCEEESSCTTCCBCCCGGGTCCCCEEEECCS------------
T ss_pred             cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC-CCcceeCCCCccccccccccCCccceeeeec------------
Confidence            34568899999999999988  77888999986543 44566777776666         66666  6            


Q ss_pred             CcCcE-EEEeeC-CCceEEec-C--C-ceeeeccC-----CCCceEEEEeeecCCCCCCEEEEeeCC----------CcE
Q 010784          176 RTENV-LVTSSC-DHSIRLWW-K--G-SCQRCFKG-----HNGPVSTLSDKLLGDGSGKILASGGED----------ATV  234 (501)
Q Consensus       176 ~~~~~-l~s~~~-dg~i~vwd-~--~-~~~~~~~~-----h~~~v~~l~~s~~~~~~~~~l~sg~~d----------g~i  234 (501)
                       ||+. |+.++. +..|.+++ .  + .....+..     |...+.+++|+    ++|+.|++++.+          ..|
T Consensus        89 -Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s----pDg~~l~~~~~~~~~~~~~~~~~~i  163 (662)
T 3azo_A           89 -AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL----PERGEVWCMAEEFTGEGPSDVRRFL  163 (662)
T ss_dssp             -SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE----TTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred             -CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC----CCCCEEEEEEecccCCCCCCceeEE
Confidence             7887 665543 56676777 4  3 55666665     67788999998    899999998877          589


Q ss_pred             EEEeccC------CCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCC--------eEEEEECC-CCcccccee
Q 010784          235 RLWSLSS------SGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDS--------KVRVWDTS-TSSAVRSSC  298 (501)
Q Consensus       235 ~iwd~~~------~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg--------~v~vwd~~-~~~~~~~~~  298 (501)
                      .+||+.+      +.       ...+. .+...+..++|+| +++.|+.++.++        .|++||+. +++..    
T Consensus       164 ~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~----  231 (662)
T 3azo_A          164 AAVPLDGSAAADRSA-------VRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA----  231 (662)
T ss_dssp             EEEETTSTTTTCGGG-------SEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE----
T ss_pred             EEEECCCCccccCCc-------eeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc----
Confidence            9999987      43       33444 5566788889998 777888777543        57777766 33100    


Q ss_pred             cccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc---EEEEecCC
Q 010784          299 CVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK---AMTWDIRR  375 (501)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~---i~iwd~~~  375 (501)
                                                           +.......+...+..+.|+|||++++++..++   |.+||+.+
T Consensus       232 -------------------------------------~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~  274 (662)
T 3azo_A          232 -------------------------------------DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT  274 (662)
T ss_dssp             -------------------------------------EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred             -------------------------------------ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence                                                 11122233467789999999999888777654   55666545


Q ss_pred             CCCCCCCCCcccccCcccC--------eEEEEecCC-eEEEEecCCCcEEEE--eCCCcccccccccCCCCCCCcceeee
Q 010784          376 SQDAVKPQPMAELDGHVGS--------VTQLHMDPY-KIVTGGRDDLRINIW--ETDTGMLANSLLCNYPEEADISTGCS  444 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~--------v~~l~~~~~-~~l~~gs~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~  444 (501)
                      ++..      .....+...        +..++++|+ +++++++. +.++||  |+.+++ +..+.     .+...+..+
T Consensus       275 ~~~~------~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~-----~~~~~~~~~  341 (662)
T 3azo_A          275 GAAT------QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA-----GPWTEWAAT  341 (662)
T ss_dssp             CCEE------ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC-----SSCCEEEEE
T ss_pred             Ccee------ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec-----CCCCeEEEE
Confidence            4321      111222221        567889888 88888877 999999  555554 55562     334556655


Q ss_pred             EeeccccE--EEEeecCCCceEEEeeccCCc
Q 010784          445 AMAVSGCR--IVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       445 ~~s~~g~~--l~s~~~d~~g~i~~w~~~~~~  473 (501)
                       ++++++.  +++++.+....|+.+++..+.
T Consensus       342 -~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          342 -LTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             -EEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             -EecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence             1445543  334442212345555554444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=3.9e-17  Score=153.13  Aligned_cols=271  Identities=10%  Similarity=0.041  Sum_probs=168.5

Q ss_pred             eeEEEEecc--cccccc--eec-ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCceeeecc
Q 010784          132 QNIKIDNFL--SESYYR--ATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCFK  203 (501)
Q Consensus       132 ~~i~vw~~~--~~~~~~--~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~~~~~  203 (501)
                      +.|.+|++.  ++ ++.  ... .++...+..++|+|             ++++|++++.+ .|.+|+   .++......
T Consensus        14 ~~i~~~~~d~~~g-~l~~~~~~~~~~~~~~~~~a~sp-------------dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~   78 (365)
T 1jof_A           14 GAIFTVQFDDEKL-TCKLIKRTEIPQDEPISWMTFDH-------------ERKNIYGAAMK-KWSSFAVKSPTEIVHEAS   78 (365)
T ss_dssp             CEEEEEEEETTTT-EEEEEEEEECCTTCCCSEEEECT-------------TSSEEEEEEBT-EEEEEEEEETTEEEEEEE
T ss_pred             CcEEEEEEECCCC-CEEEeeEEccCCCCCCcEEEECC-------------CCCEEEEEccc-eEEEEEECCCCCEEEeeE
Confidence            457776653  32 221  111 12345688899999             88999998887 999998   344433222


Q ss_pred             C-CCCceEEEEeeecCCCCCCE--EEEee-------------CCCcEEEEeccCCCccccccceeecc----CCCCceeE
Q 010784          204 G-HNGPVSTLSDKLLGDGSGKI--LASGG-------------EDATVRLWSLSSSGKRGQQALKATLY----GHEKPIKL  263 (501)
Q Consensus       204 ~-h~~~v~~l~~s~~~~~~~~~--l~sg~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~v~~  263 (501)
                      . ..+...+++|+    ++|++  +++++             .+|.+.+|++.....     ....+.    .+...+.+
T Consensus        79 ~~~~g~~~~~~~s----pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~  149 (365)
T 1jof_A           79 HPIGGHPRANDAD----TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK-----LEKNVQNYEYQENTGIHG  149 (365)
T ss_dssp             EECCSSGGGGCTT----SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC-----EEEEEEEEECCTTCCEEE
T ss_pred             eecCCCCccEEEC----CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc-----CcceEeeEEeCCCCcceE
Confidence            1 01234557775    88884  55653             689999999975322     122221    24567889


Q ss_pred             EEEeecCCeEEEEEe-CCCeEEEEECC-CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          264 MSVAGHKSFLLVTIS-KDSKVRVWDTS-TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       264 l~~~~~~~~~l~s~s-~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      ++|+| ++++++++. .++.|++||+. +++...                                          +..+
T Consensus       150 ~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~------------------------------------------~~~~  186 (365)
T 1jof_A          150 MVFDP-TETYLYSADLTANKLWTHRKLASGEVEL------------------------------------------VGSV  186 (365)
T ss_dssp             EEECT-TSSEEEEEETTTTEEEEEEECTTSCEEE------------------------------------------EEEE
T ss_pred             EEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEE------------------------------------------eeeE
Confidence            99998 666666655 46899999997 553210                                          1111


Q ss_pred             c--cCCCcEEEEEEcCCCcEEEEEcC-Cc-EEEEecC--CCCCCCCCCCcccc----cCccc------CeEEEE-ecCC-
Q 010784          342 A--ICKPILHSFSIMPSKSLICTGGI-GK-AMTWDIR--RSQDAVKPQPMAEL----DGHVG------SVTQLH-MDPY-  403 (501)
Q Consensus       342 ~--~~~~~v~~v~~~~~~~~l~~~~~-d~-i~iwd~~--~~~~~~~~~~~~~~----~~h~~------~v~~l~-~~~~-  403 (501)
                      .  .|...+..++|+|+|+++++++. ++ |.+|++.  +++.......+..+    .+|..      .+..++ |+|+ 
T Consensus       187 ~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG  266 (365)
T 1jof_A          187 DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG  266 (365)
T ss_dssp             ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS
T ss_pred             ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC
Confidence            1  23456889999999998887764 55 9999875  33311000001122    12232      588999 9999 


Q ss_pred             eEEEEecC-CC-----cEEEEeCC-CcccccccccCCCCCCCcceeeeEeec---cccEEEEeecCCCceEEEeeccCC
Q 010784          404 KIVTGGRD-DL-----RINIWETD-TGMLANSLLCNYPEEADISTGCSAMAV---SGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       404 ~~l~~gs~-dg-----~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      +++++++. ++     .|.+|++. +++........  ..+......++|+|   ||++|++++. .++.|.+|++...
T Consensus       267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~--~~~~~~~~~~a~sp~~~dg~~l~v~~~-~~~~v~v~~~~~~  342 (365)
T 1jof_A          267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS--PTPTSGGHSNAVSPCPWSDEWMAITDD-QEGWLEIYRWKDE  342 (365)
T ss_dssp             SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE--ECSSCCTTCCCEEECTTCTTEEEEECS-SSCEEEEEEEETT
T ss_pred             CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee--ecCCCCcccceecCCCcCCCEEEEEEc-CCCeEEEEEEchh
Confidence            65544333 23     89999996 56543311000  11234566789999   8999999874 3589999999876

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=1.1e-17  Score=171.86  Aligned_cols=274  Identities=11%  Similarity=0.017  Sum_probs=179.1

Q ss_pred             EEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCC---ceEEEEeeecCCCCCCEEEEeeC--
Q 010784          158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNG---PVSTLSDKLLGDGSGKILASGGE--  230 (501)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~---~v~~l~~s~~~~~~~~~l~sg~~--  230 (501)
                      +++|+|             ++.+++++ .|++|++||  .++....+..|..   .+.+++||    |+|++|++++.  
T Consensus        20 ~~~~s~-------------dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~S----pDg~~la~~~~~~   81 (719)
T 1z68_A           20 FPNWIS-------------GQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLS----PDRQFVYLESDYS   81 (719)
T ss_dssp             CCEESS-------------SSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEEC----TTSSEEEEEEEEE
T ss_pred             ccEECC-------------CCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEEC----CCCCeEEEEecCc
Confidence            678888             78655554 699999999  5555555554433   38999997    89999998876  


Q ss_pred             -------CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc-
Q 010784          231 -------DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM-  302 (501)
Q Consensus       231 -------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-  302 (501)
                             ++.|++||+.+++...    ...+   ...+..++|+| +++.|+++. ++.|++||+.+++.......... 
T Consensus        82 ~~~~~s~~~~i~~~d~~~g~~~~----~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~  152 (719)
T 1z68_A           82 KLWRYSYTATYYIYDLSNGEFVR----GNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN  152 (719)
T ss_dssp             ECSSSCEEEEEEEEETTTTEECC----SSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT
T ss_pred             eeEEeecceEEEEEECCCCcccc----ceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC
Confidence                   7899999998875200    0122   24688899998 777888775 78999999988765321110000 


Q ss_pred             --e-ec---------CCCceeeecCCCeEEEE--eCC-----------------------------------cEEEEEcC
Q 010784          303 --T-SV---------PGVPVDMKCHESMLYIA--SGS-----------------------------------SVVTIDLR  333 (501)
Q Consensus       303 --~-~~---------~~~~~~~~~~~~~~~~~--~~~-----------------------------------~i~~~d~~  333 (501)
                        . ..         .+....+.+++++..++  +..                                   .+.+||+.
T Consensus       153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~  232 (719)
T 1z68_A          153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT  232 (719)
T ss_dssp             TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred             CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence              0 00         01123566666643333  211                                   67899998


Q ss_pred             CCceE--------eeeccCCCcEEEEEEcCCCcEEEEEc--CC--c-EEEEe----cCCCCCCCCCCCcccc----cCcc
Q 010784          334 TMQKV--------MTPAICKPILHSFSIMPSKSLICTGG--IG--K-AMTWD----IRRSQDAVKPQPMAEL----DGHV  392 (501)
Q Consensus       334 ~~~~~--------~~~~~~~~~v~~v~~~~~~~~l~~~~--~d--~-i~iwd----~~~~~~~~~~~~~~~~----~~h~  392 (501)
                      +++..        ..+..|...+.+++|+||++++++..  .+  . |.+||    ..+++..      ..+    .+|.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~------~~~~~~~~~~~  306 (719)
T 1z68_A          233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP------KTQEHIEESRT  306 (719)
T ss_dssp             CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC------GGGEEEEECSS
T ss_pred             CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE------EEEecccccCC
Confidence            87752        22345788899999999998877744  22  3 88899    7766543      334    3666


Q ss_pred             cCeE-----EEEecCC-e-EEE-EecCCC--cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC---
Q 010784          393 GSVT-----QLHMDPY-K-IVT-GGRDDL--RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG---  459 (501)
Q Consensus       393 ~~v~-----~l~~~~~-~-~l~-~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d---  459 (501)
                      ..+.     .+.|+|+ + ++. ++..+|  .|.+||+.+++ ...+.     .+...+..+.++ +++.|+..+.+   
T Consensus       307 ~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt-----~~~~~v~~~~~~-d~~~i~~~~~~~~~  379 (719)
T 1z68_A          307 GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQIT-----SGKWEAINIFRV-TQDSLFYSSNEFEE  379 (719)
T ss_dssp             SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECS-----CSSSCEEEEEEE-CSSEEEEEESCGGG
T ss_pred             ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecc-----cCceEEEEEEEE-eCCEEEEEEecCCC
Confidence            6676     7899999 4 333 444555  57777877665 34442     234456777777 88777766631   


Q ss_pred             CCceEEEeeccC
Q 010784          460 EPGLLQFRDFSN  471 (501)
Q Consensus       460 ~~g~i~~w~~~~  471 (501)
                      .++.+++|.+..
T Consensus       380 ~~~~~~l~~~~~  391 (719)
T 1z68_A          380 YPGRRNIYRISI  391 (719)
T ss_dssp             CTTCBEEEEEEC
T ss_pred             CCceEEEEEEeC
Confidence            147888888764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.76  E-value=1.9e-16  Score=147.64  Aligned_cols=280  Identities=10%  Similarity=0.069  Sum_probs=184.7

Q ss_pred             CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee----------CCCceEEec--CCc
Q 010784          130 SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS----------CDHSIRLWW--KGS  197 (501)
Q Consensus       130 ~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd--~~~  197 (501)
                      .|+.+.+||..++ +.+..+..+..+  .++|+|             +++++++++          .+++|.+||  +.+
T Consensus        29 ~d~~v~v~D~~t~-~~~~~i~~g~~p--~i~~sp-------------dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~   92 (361)
T 2oiz_A           29 TESRVHVYDYTNG-KFLGMVPTAFNG--HVQVSN-------------DGKKIYTMTTYHERITRGKRSDVVEVWDADKLT   92 (361)
T ss_dssp             GGCEEEEEETTTC-CEEEEEECCEEE--EEEECT-------------TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred             ccCeEEEEECCCC-eEEEEecCCCCC--ceEECC-------------CCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence            4789999999885 667777776665  899999             889888876          367899999  556


Q ss_pred             eeeeccC------CCCceEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceee-ccCCCCceeEEEEee
Q 010784          198 CQRCFKG------HNGPVSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKAT-LYGHEKPIKLMSVAG  268 (501)
Q Consensus       198 ~~~~~~~------h~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~  268 (501)
                      .+..+..      +......++|+    ++|++|+++..  ++.|.+||+.+++      .+.. +.. .. ...+.+.|
T Consensus        93 ~~~~i~~~~~~~~~g~~p~~i~~s----pdg~~l~v~n~~~~~~v~v~d~~~~~------~~~~~i~~-~~-~~~v~~~p  160 (361)
T 2oiz_A           93 FEKEISLPPKRVQGLNYDGLFRQT----TDGKFIVLQNASPATSIGIVDVAKGD------YVEDVTAA-AG-CWSVIPQP  160 (361)
T ss_dssp             EEEEEEECTTBCCBCCCGGGEEEC----TTSSEEEEEEESSSEEEEEEETTTTE------EEEEEGGG-TT-EEEEEECT
T ss_pred             EEEEEEcCccccccCCCcceEEEC----CCCCEEEEECCCCCCeEEEEECCCCc------EEEEEecC-CC-cceeEEcC
Confidence            6665542      23445678886    89999998874  5799999999875      3444 432 22 12245666


Q ss_pred             cCCeEEEEEeCCCeEEEEECCC-CccccceecccceecCCCceee--ecCCCeEEEEe-CCcEEEEEcCCCceE--eeec
Q 010784          269 HKSFLLVTISKDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVDM--KCHESMLYIAS-GSSVVTIDLRTMQKV--MTPA  342 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~i~~~d~~~~~~~--~~~~  342 (501)
                      .+...+++.+.||.+.+|+... ++................+..+  ...+...++.+ ++.+.++|+......  ..+.
T Consensus       161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~  240 (361)
T 2oiz_A          161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS  240 (361)
T ss_dssp             TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred             CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence            5557888899999999999865 4332111100111111111111  22233333333 457899998654321  1111


Q ss_pred             c------CC----CcEEEEEEcCCCcEEEEEcC-----------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEe
Q 010784          343 I------CK----PILHSFSIMPSKSLICTGGI-----------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM  400 (501)
Q Consensus       343 ~------~~----~~v~~v~~~~~~~~l~~~~~-----------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  400 (501)
                      .      +.    .....++++|++..++++..           .. |.+||+.+.+.+      .++..+.  +.+++|
T Consensus       241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v------~~i~~~~--p~~ia~  312 (361)
T 2oiz_A          241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV------ARIPGRD--ALSMTI  312 (361)
T ss_dssp             SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE------EEEECTT--CCEEEE
T ss_pred             ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE------EEEecCC--eeEEEE
Confidence            0      01    11112689999777666532           34 999999987654      7777665  999999


Q ss_pred             cCC-eEEEEecCCCcEEEEeCCCc--ccccccccCCCCCCCcceeeeEeecccc
Q 010784          401 DPY-KIVTGGRDDLRINIWETDTG--MLANSLLCNYPEEADISTGCSAMAVSGC  451 (501)
Q Consensus       401 ~~~-~~l~~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~  451 (501)
                      +|+ +++++++. +.|.+||..++  +.+.++     .........++++|+|+
T Consensus       313 spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i-----~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          313 DQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI-----EGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ETTTTEEEEECS-SCEEEEECSSSSCEEEEEE-----TTSCSSEEEEEECCCSC
T ss_pred             CCCCCEEEEeCC-CeEEEEECCCCcceeeEEe-----ccCCCCcEEEEecCCCC
Confidence            999 66666555 99999999999  888886     23345667899999986

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=1.1e-15  Score=141.01  Aligned_cols=252  Identities=10%  Similarity=0.006  Sum_probs=175.4

Q ss_pred             CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC------------------------CceEEec--CCceeeecc-CC
Q 010784          153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD------------------------HSIRLWW--KGSCQRCFK-GH  205 (501)
Q Consensus       153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------------------------g~i~vwd--~~~~~~~~~-~h  205 (501)
                      -+.+.+++++|             +|+++++...+                        ++|.+||  +++.+..+. ++
T Consensus        23 l~~v~~va~d~-------------~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~   89 (329)
T 3fvz_A           23 PGQVSGVALDS-------------KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL   89 (329)
T ss_dssp             CSCEEEEEECT-------------TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT
T ss_pred             cCCceEEEECC-------------CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc
Confidence            46799999998             78999888877                        4799999  466665553 44


Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec---------cCCCCceeEEEEeecCCeEEEE
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL---------YGHEKPIKLMSVAGHKSFLLVT  276 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~v~~l~~~~~~~~~l~s  276 (501)
                      ......+++.    ++|+++++...++.|++||......     .+..+         ..+-.....++++|.++.++++
T Consensus        90 ~~~p~gia~d----~~g~l~v~d~~~~~v~~~~~~g~~~-----~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~  160 (329)
T 3fvz_A           90 FYLPHGLSID----TDGNYWVTDVALHQVFKLDPHSKEG-----PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS  160 (329)
T ss_dssp             CSSEEEEEEC----TTSCEEEEETTTTEEEEECTTCSSC-----CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE
T ss_pred             cCCceEEEEC----CCCCEEEEECCCCEEEEEeCCCCeE-----EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE
Confidence            5578899995    8899888888899999999875421     12322         2344568899999756778888


Q ss_pred             Ee-CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC
Q 010784          277 IS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP  355 (501)
Q Consensus       277 ~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~  355 (501)
                      .+ .++.|++||. +++.+......      +                          .+.  ....++-.....++++|
T Consensus       161 d~~~~~~I~~~~~-~g~~~~~~~~~------g--------------------------~~~--~~~~~~~~~p~gia~d~  205 (329)
T 3fvz_A          161 DGYCNSRIVQFSP-SGKFVTQWGEE------S--------------------------SGS--SPRPGQFSVPHSLALVP  205 (329)
T ss_dssp             ECSSCCEEEEECT-TSCEEEEECEE------C--------------------------CSS--SCCTTEESCEEEEEEET
T ss_pred             eCCCCCeEEEEcC-CCCEEEEeccC------C--------------------------CCC--CCCCcccCCCcEEEEEC
Confidence            76 6899999994 44321111000      0                          000  00001123478999999


Q ss_pred             C-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc--cCcccCeEEEEecCCeEE-------EEecCCCcEEEEeCCCcc
Q 010784          356 S-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL--DGHVGSVTQLHMDPYKIV-------TGGRDDLRINIWETDTGM  424 (501)
Q Consensus       356 ~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~l-------~~gs~dg~i~iwd~~~~~  424 (501)
                      + +.++++...++ |++||..+++.+      ..+  ..+...+..++++|..++       ++.+.+..|++|+..+++
T Consensus       206 ~~g~l~v~d~~~~~I~~~~~~~G~~~------~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~  279 (329)
T 3fvz_A          206 HLDQLCVADRENGRIQCFKTDTKEFV------REIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE  279 (329)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTCCEE------EEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEE------EEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence            8 77777777777 999999876543      444  345667889999995222       223345589999999999


Q ss_pred             cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          425 LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       425 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      .+..+...  ..+......++++|+|.++++..  .++.|++|+...
T Consensus       280 ~~~~~~~~--~~~~~~p~~ia~~~dG~lyvad~--~~~~I~~~~~~~  322 (329)
T 3fvz_A          280 IIDVFKPV--RKHFDMPHDIVASEDGTVYIGDA--HTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEECCS--SSCCSSEEEEEECTTSEEEEEES--SSCCEEEEEEEE
T ss_pred             EEEEEcCC--CCccCCeeEEEECCCCCEEEEEC--CCCEEEEEeCCc
Confidence            88887321  23456788999999997777776  568999999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=7.8e-16  Score=141.92  Aligned_cols=238  Identities=11%  Similarity=0.045  Sum_probs=173.2

Q ss_pred             CCceEEeeCCcEEEeecCCe------------------------eeEEEEecccccccceecc-cCCcceeEEEeeccCc
Q 010784          112 PHDHILLDNNDIFSTQGSSI------------------------QNIKIDNFLSESYYRATLS-DHKARITCMRLFPLHE  166 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d------------------------~~i~vw~~~~~~~~~~~~~-~h~~~V~~~~~~~~~~  166 (501)
                      .+..|+++++|.+++++..+                        +.|.+||..++ +....+. ++-.....+++++   
T Consensus        25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~p~gia~d~---  100 (329)
T 3fvz_A           25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-EILQSSGKNLFYLPHGLSIDT---  100 (329)
T ss_dssp             CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC-CEEEEECTTTCSSEEEEEECT---
T ss_pred             CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC-eEEeccCCCccCCceEEEECC---
Confidence            48899999999999988877                        47999998875 4444443 5556789999998   


Q ss_pred             CcccccCCCCcCcEEEEeeCCCceEEec-CCc--eeeec---------cCCCCceEEEEeeecCCC-CCCEEEEee-CCC
Q 010784          167 TSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS--CQRCF---------KGHNGPVSTLSDKLLGDG-SGKILASGG-EDA  232 (501)
Q Consensus       167 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~--~~~~~---------~~h~~~v~~l~~s~~~~~-~~~~l~sg~-~dg  232 (501)
                                +|+++++...++.|++|| .+.  .+..+         ..+......++++    + ++.++++.+ .++
T Consensus       101 ----------~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~----~~~g~lyv~d~~~~~  166 (329)
T 3fvz_A          101 ----------DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVE----PSTGAVFVSDGYCNS  166 (329)
T ss_dssp             ----------TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEEC----TTTCCEEEEECSSCC
T ss_pred             ----------CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEe----CCCCeEEEEeCCCCC
Confidence                      789999998899999999 554  44444         2445568899996    6 788888876 689


Q ss_pred             cEEEEeccCCCccccccceeeccC----------CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc
Q 010784          233 TVRLWSLSSSGKRGQQALKATLYG----------HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM  302 (501)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  302 (501)
                      .|++|+.+ +.      .+..+..          +-.....|+++++.+.++++...++.|++||..+++.+...     
T Consensus       167 ~I~~~~~~-g~------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~-----  234 (329)
T 3fvz_A          167 RIVQFSPS-GK------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI-----  234 (329)
T ss_dssp             EEEEECTT-SC------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-----
T ss_pred             eEEEEcCC-CC------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE-----
Confidence            99999954 33      2333321          22347899999854888888888999999999866432211     


Q ss_pred             eecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC------CCcEEEEEcCCc-EEEEecCC
Q 010784          303 TSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP------SKSLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~------~~~~l~~~~~d~-i~iwd~~~  375 (501)
                                                           ....+...+.+++++|      +++.+++...+. |++||..+
T Consensus       235 -------------------------------------~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~  277 (329)
T 3fvz_A          235 -------------------------------------KHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS  277 (329)
T ss_dssp             -------------------------------------CCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred             -------------------------------------eccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence                                                 0112455677788888      333333333444 99999988


Q ss_pred             CCCCCCCCCcccc---cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784          376 SQDAVKPQPMAEL---DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       376 ~~~~~~~~~~~~~---~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      ++.+      ..+   .++...+..|+++|+ .++++...+++|++|++..
T Consensus       278 g~~~------~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          278 GEII------DVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCEE------EEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CeEE------EEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            7654      444   356677999999999 8999988999999999854

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=6.1e-15  Score=133.20  Aligned_cols=242  Identities=10%  Similarity=0.143  Sum_probs=170.3

Q ss_pred             ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeecc------CCCCceEEEEeeecCCCCC
Q 010784          150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFK------GHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~------~h~~~v~~l~~s~~~~~~~  222 (501)
                      .+|-..+.++++++             +++++++...++.|.+|| .++.+..+.      ++...+..+++.   ++++
T Consensus        26 ~g~~~~p~~v~~~~-------------~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~---~~~g   89 (286)
T 1q7f_A           26 EGQFTEPSGVAVNA-------------QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVV---RNSG   89 (286)
T ss_dssp             TTCBSCEEEEEECT-------------TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEE---TTTT
T ss_pred             CCccCCCceEEECC-------------CCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEE---cCCC
Confidence            45667899999998             788888888899999999 666555553      244578889884   2566


Q ss_pred             CEEEEeeC-CCcEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          223 KILASGGE-DATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       223 ~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      .++++... ++.|.+||. ++.      .+..+. .+...+..+++.+ +++++++...++.|.+||.... .....   
T Consensus        90 ~l~v~~~~~~~~i~~~d~-~g~------~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~-~~~~~---  157 (286)
T 1q7f_A           90 DIIVTERSPTHQIQIYNQ-YGQ------FVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGN-VLHKF---  157 (286)
T ss_dssp             EEEEEECGGGCEEEEECT-TSC------EEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSC-EEEEE---
T ss_pred             eEEEEcCCCCCEEEEECC-CCc------EEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCC-EEEEe---
Confidence            66666543 889999994 343      233332 3445688999997 6778887778899999996432 11100   


Q ss_pred             cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                                                             ....+...+..++++++|+++++...++ |++||... +. 
T Consensus       158 ---------------------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~-  196 (286)
T 1q7f_A          158 ---------------------------------------GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QY-  196 (286)
T ss_dssp             ---------------------------------------ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CE-
T ss_pred             ---------------------------------------CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CE-
Confidence                                                   0012335678999999999888877666 99999753 22 


Q ss_pred             CCCCCcccccC--cccCeEEEEecCC-eEEEEecCCC-cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784          380 VKPQPMAELDG--HVGSVTQLHMDPY-KIVTGGRDDL-RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT  455 (501)
Q Consensus       380 ~~~~~~~~~~~--h~~~v~~l~~~~~-~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  455 (501)
                           +..+..  +...+..++++++ +++++...++ .|.+||. +++.+..+..+.   ....+..++++|+|+++++
T Consensus       197 -----~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~---~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          197 -----LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV---KHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             -----EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS---CCSCEEEEEEETTTEEEEE
T ss_pred             -----EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC---CCCcceeEEECCCCcEEEE
Confidence                 233432  2357899999999 8888876775 9999995 567776664321   1234678999999987777


Q ss_pred             eecCCCceEEEeeccCC
Q 010784          456 ASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       456 ~~~d~~g~i~~w~~~~~  472 (501)
                       +  .++.|++|++...
T Consensus       268 -~--~~~~v~v~~~~~~  281 (286)
T 1q7f_A          268 -S--KDYRLYIYRYVQL  281 (286)
T ss_dssp             -E--TTTEEEEEECSCC
T ss_pred             -C--CCCeEEEEEcccc
Confidence             5  4599999998653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=2.8e-16  Score=161.40  Aligned_cols=285  Identities=9%  Similarity=0.038  Sum_probs=164.7

Q ss_pred             cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCc-----eEEEEeeecCCCCCCEEE
Q 010784          154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGP-----VSTLSDKLLGDGSGKILA  226 (501)
Q Consensus       154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~-----v~~l~~s~~~~~~~~~l~  226 (501)
                      ....++.|+|             ++.+++++  ||+|++||  ++++...+.+|...     ...+.||    |+|++|+
T Consensus        17 ~~~~~~~w~~-------------dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S----pdg~~l~   77 (740)
T 4a5s_A           17 LKLYSLRWIS-------------DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS----PDGQFIL   77 (740)
T ss_dssp             CCCCCEEECS-------------SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC----TTSSEEE
T ss_pred             ccccccEECC-------------CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEEC----CCCCEEE
Confidence            3466889999             88888886  99999999  67766667766543     2347777    8999999


Q ss_pred             EeeCC---------CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784          227 SGGED---------ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       227 sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  297 (501)
                      .++.+         +.+.+||+.+++       ...+..|...+...+|+| +++.|+.++ ++.|++||+.+++..+..
T Consensus        78 ~~~~~~~~~r~~~~~~~~~~d~~~~~-------~~~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt  148 (740)
T 4a5s_A           78 LEYNYVKQWRHSYTASYDIYDLNKRQ-------LITEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRIT  148 (740)
T ss_dssp             EEEEEEECSSSCEEEEEEEEETTTTE-------ECCSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred             EEECCeeeEEEccceEEEEEECCCCc-------EEEcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEc
Confidence            98876         567799999875       345667788899999999 777787774 689999999887543211


Q ss_pred             ecccc--e--ec---------CCCceeeecCCCeEEEEeCCc----EEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784          298 CCVGM--T--SV---------PGVPVDMKCHESMLYIASGSS----VVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI  360 (501)
Q Consensus       298 ~~~~~--~--~~---------~~~~~~~~~~~~~~~~~~~~~----i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l  360 (501)
                      .....  .  ..         -+....+.+++++..++....    +.+|++.....   -..+...+..+.+.+.|.. 
T Consensus       149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~---~~~~~~~~~~~~yp~~G~~-  224 (740)
T 4a5s_A          149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD---ESLQYPKTVRVPYPKAGAV-  224 (740)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS---TTCSSCEEEEEECCBTTSC-
T ss_pred             CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC---CCCCCCcceeecCCCCcCc-
Confidence            00000  0  00         011112233333333222211    11111100000   0001122333333333211 


Q ss_pred             EEEcCC-cEEEEecCC---CCCCCCCCCccccc------CcccCeEEEEecCC-eEEEEe----cCCCcEEEEeCCCcc-
Q 010784          361 CTGGIG-KAMTWDIRR---SQDAVKPQPMAELD------GHVGSVTQLHMDPY-KIVTGG----RDDLRINIWETDTGM-  424 (501)
Q Consensus       361 ~~~~~d-~i~iwd~~~---~~~~~~~~~~~~~~------~h~~~v~~l~~~~~-~~l~~g----s~dg~i~iwd~~~~~-  424 (501)
                         ... .|++||+.+   ++..    ....+.      +|...+..++|+|+ ++++..    +.+..|.+||+.+++ 
T Consensus       225 ---~~~~~l~v~d~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~  297 (740)
T 4a5s_A          225 ---NPTVKFFVVNTDSLSSVTNA----TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG  297 (740)
T ss_dssp             ---CCEEEEEEEETTSCCSSSCC----CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred             ---CCeeEEEEEECCCCCCCCcc----eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc
Confidence               111 277888887   5311    012222      47788999999999 754443    234479999999887 


Q ss_pred             ---cccccccCCCCCCCccee-----eeEeeccccEEE-Eeec-CCCceEEEeeccCCccceee
Q 010784          425 ---LANSLLCNYPEEADISTG-----CSAMAVSGCRIV-TASY-GEPGLLQFRDFSNATCPVLK  478 (501)
Q Consensus       425 ---~~~~~~~~~~~~~~~~v~-----~~~~s~~g~~l~-s~~~-d~~g~i~~w~~~~~~~~~~s  478 (501)
                         +....... ...+...+.     ..+|+|||+.|+ ..+. +....|++|+...+....++
T Consensus       298 ~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT  360 (740)
T 4a5s_A          298 RWNCLVARQHI-EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT  360 (740)
T ss_dssp             EEEECGGGCEE-EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred             ccceeEEEEee-eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence               32222100 012333443     688999999877 5552 23356778887665544333

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=1.4e-16  Score=151.16  Aligned_cols=282  Identities=5%  Similarity=-0.090  Sum_probs=170.5

Q ss_pred             CceEEeeCCcEEEeecCC---eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784          113 HDHILLDNNDIFSTQGSS---IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS  189 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~---d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  189 (501)
                      +..++|+|+|.+++....   +..+.+|+..++ +......++......+.|+|             +|+.|+.++.++.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~sp-------------dg~~l~~~~~~~~  103 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ-QAVQLTEGKGDNTFGGFIST-------------DERAFFYVKNELN  103 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT-EEEECCCSSCBCTTTCEECT-------------TSSEEEEEETTTE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCC-cEEEeecCCCCccccceECC-------------CCCEEEEEEcCCc
Confidence            788899999999876533   346788888764 43333333333333478888             8999999999999


Q ss_pred             eEEec--CCceeeeccCCCCceEE---EEee------------ecCCCCCCEEEEe-----eCCCcEEEEeccCCCcccc
Q 010784          190 IRLWW--KGSCQRCFKGHNGPVST---LSDK------------LLGDGSGKILASG-----GEDATVRLWSLSSSGKRGQ  247 (501)
Q Consensus       190 i~vwd--~~~~~~~~~~h~~~v~~---l~~s------------~~~~~~~~~l~sg-----~~dg~i~iwd~~~~~~~~~  247 (501)
                      |.+||  .++.......+......   ++|.            +...++++.++.+     ..+..|.+||+.+++.   
T Consensus       104 l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~---  180 (396)
T 3c5m_A          104 LMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL---  180 (396)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE---
T ss_pred             EEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE---
Confidence            99998  44444444334332222   2110            0112566665544     3566899999987652   


Q ss_pred             ccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEE
Q 010784          248 QALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYI  321 (501)
Q Consensus       248 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (501)
                          ..+..+...+..+.|+|.++..|+..+.+      ..|.+||+.+++.                            
T Consensus       181 ----~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----------------------------  228 (396)
T 3c5m_A          181 ----EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV----------------------------  228 (396)
T ss_dssp             ----EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC----------------------------
T ss_pred             ----EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce----------------------------
Confidence                22334667788999997445556655543      3466666654321                            


Q ss_pred             EeCCcEEEEEcCCCceEeeeccC-CCcEEEEEEcCCCcEEEEEcCC-----c-EEEEecCCCCCCCCCCCcccccCcccC
Q 010784          322 ASGSSVVTIDLRTMQKVMTPAIC-KPILHSFSIMPSKSLICTGGIG-----K-AMTWDIRRSQDAVKPQPMAELDGHVGS  394 (501)
Q Consensus       322 ~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d-----~-i~iwd~~~~~~~~~~~~~~~~~~h~~~  394 (501)
                                      ....... ...+..+.|+|+|+.|+.++.+     + |++||+.+++..    .+..+.+    
T Consensus       229 ----------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~~~----  284 (396)
T 3c5m_A          229 ----------------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE----EVMVMPP----  284 (396)
T ss_dssp             ----------------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE----EEEECCS----
T ss_pred             ----------------eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE----EeeeCCC----
Confidence                            1111111 2347789999999977766532     4 999999876532    1122222    


Q ss_pred             eEEEEecC-C-eEEEEec----------------CCCcEEEEeCCCcccccccccCCCC------CCCcceeeeEeeccc
Q 010784          395 VTQLHMDP-Y-KIVTGGR----------------DDLRINIWETDTGMLANSLLCNYPE------EADISTGCSAMAVSG  450 (501)
Q Consensus       395 v~~l~~~~-~-~~l~~gs----------------~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~g  450 (501)
                      .. +.|+| + ++++.++                .++.|++||+.+++.. .+..+...      .....+..++|+|||
T Consensus       285 ~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg  362 (396)
T 3c5m_A          285 CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPND  362 (396)
T ss_dssp             EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred             CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCC
Confidence            23 88999 8 6666543                3478999999887643 33211100      000025667899999


Q ss_pred             cEEEEeecCCCceEEEeecc
Q 010784          451 CRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       451 ~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +.|+.++. .++...+|.+.
T Consensus       363 ~~l~~~s~-~~~~~~l~~~~  381 (396)
T 3c5m_A          363 DGVLFTSD-FEGVPAIYIAD  381 (396)
T ss_dssp             SEEEEEEC-TTSSCEEEEEE
T ss_pred             CeEEEEec-CCCCceEEEEE
Confidence            99888774 34555555544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.72  E-value=4.2e-15  Score=137.46  Aligned_cols=273  Identities=8%  Similarity=0.024  Sum_probs=182.6

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      ..+.+++|++++..++..+.++.++.|.    .+....+..+...+.+++|++             ++++++++..++.|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------------~g~l~~~~~~~~~i   68 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDR-------------QGQLFLLDVFEGNI   68 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECT-------------TSCEEEEETTTCEE
T ss_pred             cccceeeecCCccceeEEeecccCcccc----cceeEEEeccCccccCcEECC-------------CCCEEEEECCCCEE
Confidence            3488899999998888888899999993    355666777777889999998             78888888889999


Q ss_pred             EEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC----CcEEEEeccCCCccccccceeec--cCCCCcee
Q 010784          191 RLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED----ATVRLWSLSSSGKRGQQALKATL--YGHEKPIK  262 (501)
Q Consensus       191 ~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~  262 (501)
                      .+||  .++.......+...+.+++++    ++++++++...+    +.|.+||..++..      ...+  ..+...+.
T Consensus        69 ~~~d~~~~~~~~~~~~~~~~~~~i~~~----~dg~l~v~~~~~~~~~~~i~~~d~~~~~~------~~~~~~~~~~~~~~  138 (333)
T 2dg1_A           69 FKINPETKEIKRPFVSHKANPAAIKIH----KDGRLFVCYLGDFKSTGGIFAATENGDNL------QDIIEDLSTAYCID  138 (333)
T ss_dssp             EEECTTTCCEEEEEECSSSSEEEEEEC----TTSCEEEEECTTSSSCCEEEEECTTSCSC------EEEECSSSSCCCEE
T ss_pred             EEEeCCCCcEEEEeeCCCCCcceEEEC----CCCcEEEEeCCCCCCCceEEEEeCCCCEE------EEEEccCccCCccc
Confidence            9999  344333333566789999996    788888877666    6899999887653      1112  12445788


Q ss_pred             EEEEeecCCeEEEEEeC------CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          263 LMSVAGHKSFLLVTISK------DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      .+.+++ ++.++++...      .+.|..+|..+++..                                          
T Consensus       139 ~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~------------------------------------------  175 (333)
T 2dg1_A          139 DMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT------------------------------------------  175 (333)
T ss_dssp             EEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEE------------------------------------------
T ss_pred             ceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEE------------------------------------------
Confidence            999997 6666666543      244555554433210                                          


Q ss_pred             eEeeeccCCCcEEEEEEcCCCcEEE-EEcCCc-EEEEecCC-CCCCCCC--CCcccccCcccCeEEEEecCC-eEEEEec
Q 010784          337 KVMTPAICKPILHSFSIMPSKSLIC-TGGIGK-AMTWDIRR-SQDAVKP--QPMAELDGHVGSVTQLHMDPY-KIVTGGR  410 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~d~-i~iwd~~~-~~~~~~~--~~~~~~~~h~~~v~~l~~~~~-~~l~~gs  410 (501)
                         .+......+..++|+|+++.++ +.+.++ |.+||+.. +......  .....+.++ ..+..++++++ +++++..
T Consensus       176 ---~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~  251 (333)
T 2dg1_A          176 ---PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY  251 (333)
T ss_dssp             ---EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE
T ss_pred             ---EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc
Confidence               0111123467899999998554 444455 99999964 2211000  000112222 46788999999 8777766


Q ss_pred             CCCcEEEEeCCCcccccccccCCC-CCCCcceeeeEeeccccEEEEeec
Q 010784          411 DDLRINIWETDTGMLANSLLCNYP-EEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       411 ~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      .++.|.+||. +++.+..+..... .++...+..++|+||++.|+.++.
T Consensus       252 ~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          252 GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence            7889999998 5666666632110 112236789999999877766653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=9.1e-15  Score=132.04  Aligned_cols=233  Identities=11%  Similarity=0.120  Sum_probs=168.4

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecc------cCCcceeEEEee-ccCcCcccccCCCCcCcEEEEe
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLS------DHKARITCMRLF-PLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~------~h~~~V~~~~~~-~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      .+.++++++++.++++...++.|.+||...  +....+.      +|...+..+++. +             +++++++.
T Consensus        31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g--~~~~~~~~~~~~~~~~~~p~~i~~~~~-------------~g~l~v~~   95 (286)
T 1q7f_A           31 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG--RFKFQFGECGKRDSQLLYPNRVAVVRN-------------SGDIIVTE   95 (286)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS--CEEEEECCBSSSTTCBSSEEEEEEETT-------------TTEEEEEE
T ss_pred             CCceEEECCCCCEEEEECCCCEEEEECCCC--cEEEEecccCCCcccccCceEEEEEcC-------------CCeEEEEc
Confidence            488999999999999988899999999873  4444442      345678899995 4             66777766


Q ss_pred             eC-CCceEEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc--CCCC
Q 010784          185 SC-DHSIRLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY--GHEK  259 (501)
Q Consensus       185 ~~-dg~i~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~  259 (501)
                      .. ++.|.+|| .++.+..+. .+...+.++++.    ++++++++...++.|.+||....       ....+.  .+..
T Consensus        96 ~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~----~~g~l~v~~~~~~~i~~~~~~g~-------~~~~~~~~~~~~  164 (286)
T 1q7f_A           96 RSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVD----NKGRIIVVECKVMRVIIFDQNGN-------VLHKFGCSKHLE  164 (286)
T ss_dssp             CGGGCEEEEECTTSCEEEEECTTTCSCEEEEEEC----TTSCEEEEETTTTEEEEECTTSC-------EEEEEECTTTCS
T ss_pred             CCCCCEEEEECCCCcEEEEecCccCCCceEEEEe----CCCCEEEEECCCCEEEEEcCCCC-------EEEEeCCCCccC
Confidence            43 88999999 666666654 344578899985    78888888778899999996532       233332  3455


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      .+..+++++ +++++++.+.++.|++||.... .+                                            .
T Consensus       165 ~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~-~~--------------------------------------------~  198 (286)
T 1q7f_A          165 FPNGVVVND-KQEIFISDNRAHCVKVFNYEGQ-YL--------------------------------------------R  198 (286)
T ss_dssp             SEEEEEECS-SSEEEEEEGGGTEEEEEETTCC-EE--------------------------------------------E
T ss_pred             CcEEEEECC-CCCEEEEECCCCEEEEEcCCCC-EE--------------------------------------------E
Confidence            688999997 6778887788899999997432 11                                            1


Q ss_pred             eec--cCCCcEEEEEEcCCCcEEEEEcCC--cEEEEecCCCCCCCCCCCcccccCcc--cCeEEEEecCC-eEEEEecCC
Q 010784          340 TPA--ICKPILHSFSIMPSKSLICTGGIG--KAMTWDIRRSQDAVKPQPMAELDGHV--GSVTQLHMDPY-KIVTGGRDD  412 (501)
Q Consensus       340 ~~~--~~~~~v~~v~~~~~~~~l~~~~~d--~i~iwd~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~-~~l~~gs~d  412 (501)
                      .+.  ++...+..++++++|+++++...+  .|.+||.. ++.      +..+..+.  ..+.+++++|+ +++++. .|
T Consensus       199 ~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~------~~~~~~~~~~~~~~~i~~~~~g~l~vs~-~~  270 (286)
T 1q7f_A          199 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQL------ISALESKVKHAQCFDVALMDDGSVVLAS-KD  270 (286)
T ss_dssp             EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCE------EEEEEESSCCSCEEEEEEETTTEEEEEE-TT
T ss_pred             EEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCE------EEEEcccCCCCcceeEEECCCCcEEEEC-CC
Confidence            111  123567899999999998888754  49999954 332      24443332  34789999999 888884 79


Q ss_pred             CcEEEEeCCCcc
Q 010784          413 LRINIWETDTGM  424 (501)
Q Consensus       413 g~i~iwd~~~~~  424 (501)
                      ++|++|++....
T Consensus       271 ~~v~v~~~~~~~  282 (286)
T 1q7f_A          271 YRLYIYRYVQLA  282 (286)
T ss_dssp             TEEEEEECSCCC
T ss_pred             CeEEEEEccccc
Confidence            999999986543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=1.5e-15  Score=142.28  Aligned_cols=247  Identities=8%  Similarity=-0.019  Sum_probs=158.7

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecc-cccccceecccC-CcceeEEEeeccCcCcccccCCCCcCcE--EEEee-
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFL-SESYYRATLSDH-KARITCMRLFPLHETSLFRSEPQRTENV--LVTSS-  185 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~-~~~~~~~~~~~h-~~~V~~~~~~~~~~~~~~~~~~~~~~~~--l~s~~-  185 (501)
                      ..+..++++|+|.++++++.+ .+.+|++. ++ +........ .+.+.+++|+|             +|++  +++++ 
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g-~~~~~~~~~~~g~~~~~~~sp-------------dg~~l~~~~~~~  104 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT-EIVHEASHPIGGHPRANDADT-------------NTRAIFLLAAKQ  104 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT-EEEEEEEEECCSSGGGGCTTS-------------CCEEEEEEECSS
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCC-CEEEeeEeecCCCCccEEECC-------------CCCEEEEEEecC
Confidence            368899999999998888877 89999987 54 433222110 02244566666             8884  55553 


Q ss_pred             ------------CCCceEEec---CCceeeecc----CCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEecc-CCCc
Q 010784          186 ------------CDHSIRLWW---KGSCQRCFK----GHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLS-SSGK  244 (501)
Q Consensus       186 ------------~dg~i~vwd---~~~~~~~~~----~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~-~~~~  244 (501)
                                  .+|++.+|+   .++....+.    .+...+.+++|+    ++|+++++++. ++.|++|++. +++.
T Consensus       105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s----pdG~~l~~~~~~~~~v~~~~~~~~g~~  180 (365)
T 1jof_A          105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD----PTETYLYSADLTANKLWTHRKLASGEV  180 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC----TTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred             CcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC----CCCCEEEEEcCCCCEEEEEEECCCCCE
Confidence                        689999998   344433332    255678999997    89998887664 6799999998 5542


Q ss_pred             cccccceeecc--CCCCceeEEEEeecCCeEEEEEe-CCCeEEEEECC--CCccccceecccceecCCCceeeecCCCeE
Q 010784          245 RGQQALKATLY--GHEKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTS--TSSAVRSSCCVGMTSVPGVPVDMKCHESML  319 (501)
Q Consensus       245 ~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (501)
                          ..+..+.  .|...+..++|+| +++++++++ .++.|.+|++.  +++......                     
T Consensus       181 ----~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~---------------------  234 (365)
T 1jof_A          181 ----ELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHH---------------------  234 (365)
T ss_dssp             ----EEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEE---------------------
T ss_pred             ----EEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccc---------------------
Confidence                1122232  2456789999998 676776666 47899999875  332210000                     


Q ss_pred             EEEeCCcEEEEEcCCCceEeee----ccCCC------cEEEEE-EcCCCcEEEEEc--CC-----cEEEEecC-CCCCCC
Q 010784          320 YIASGSSVVTIDLRTMQKVMTP----AICKP------ILHSFS-IMPSKSLICTGG--IG-----KAMTWDIR-RSQDAV  380 (501)
Q Consensus       320 ~~~~~~~i~~~d~~~~~~~~~~----~~~~~------~v~~v~-~~~~~~~l~~~~--~d-----~i~iwd~~-~~~~~~  380 (501)
                                       .+..+    .+|..      .+..++ |+|||++|+++.  .+     .|.+|++. +++.. 
T Consensus       235 -----------------~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~-  296 (365)
T 1jof_A          235 -----------------SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE-  296 (365)
T ss_dssp             -----------------EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE-
T ss_pred             -----------------eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE-
Confidence                             00011    11222      578999 999999887665  34     59999996 33311 


Q ss_pred             CCCCcc-cccCcccCeEEEEecC---C-eEEEEecC-CCcEEEEeCCCc
Q 010784          381 KPQPMA-ELDGHVGSVTQLHMDP---Y-KIVTGGRD-DLRINIWETDTG  423 (501)
Q Consensus       381 ~~~~~~-~~~~h~~~v~~l~~~~---~-~~l~~gs~-dg~i~iwd~~~~  423 (501)
                         .+. ....+...+..++|+|   + +++++++. ++.|.+|++...
T Consensus       297 ---~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          297 ---KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ---EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ---EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence               001 1223444567889999   6 55555544 589999998755

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.70  E-value=3e-15  Score=141.60  Aligned_cols=280  Identities=10%  Similarity=-0.064  Sum_probs=163.7

Q ss_pred             ecccccccceecccCCcceeE-----EEeeccCcCcccccCCCCcCcEEEEeeC-CCc--eEEec--CCceeeeccCCCC
Q 010784          138 NFLSESYYRATLSDHKARITC-----MRLFPLHETSLFRSEPQRTENVLVTSSC-DHS--IRLWW--KGSCQRCFKGHNG  207 (501)
Q Consensus       138 ~~~~~~~~~~~~~~h~~~V~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~--i~vwd--~~~~~~~~~~h~~  207 (501)
                      +..++ .....+..|......     .+|+|             ||++|+.++. +|.  |.+||  .++......++..
T Consensus        16 ~~~~g-~~~~~lt~~~~~~~~~~~~~~~~Sp-------------Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~   81 (388)
T 3pe7_A           16 DASTG-AQVTRLTPPDVTCHRNYFYQKCFTR-------------DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD   81 (388)
T ss_dssp             CTTTC-CEEEECSCTTSCEECCCTTSCCBCT-------------TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB
T ss_pred             cCCCC-cceEEecCCcccccchhhcCccCCC-------------CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC
Confidence            44443 556677777766655     67777             8999988887 675  66677  5555555556666


Q ss_pred             ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE--eecCCeEEEEEeCCCeEEE
Q 010784          208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV--AGHKSFLLVTISKDSKVRV  285 (501)
Q Consensus       208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~l~s~s~dg~v~v  285 (501)
                      .+..+.|+    |+++.|+.++.++.|++||+.+++.      ......+...+....+  ++ ++..++....++    
T Consensus        82 ~~~~~~~s----pdg~~l~~~~~~~~l~~~d~~~g~~------~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~----  146 (388)
T 3pe7_A           82 NTFGGFLS----PDDDALFYVKDGRNLMRVDLATLEE------NVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRR----  146 (388)
T ss_dssp             CSSSCEEC----TTSSEEEEEETTTEEEEEETTTCCE------EEEEECCTTEEEEEEEEECT-TSSEEEEEEEEG----
T ss_pred             CccceEEc----CCCCEEEEEeCCCeEEEEECCCCcc------eeeeechhhcccccceeECC-CCCeeccccccC----
Confidence            66567887    8999999999999999999998763      3334444444433333  44 555554321100    


Q ss_pred             EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEc
Q 010784          286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGG  364 (501)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~  364 (501)
                         ...........        ........       ....+.+||+.+++... +..+...+..+.|+| +|+.|+..+
T Consensus       147 ---~~~~~~~~~~~--------~~~~~~~~-------~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~  207 (388)
T 3pe7_A          147 ---EDWVPLTDWKK--------FHEFYFTK-------PCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCH  207 (388)
T ss_dssp             ---GGCCCCCSHHH--------HHHHGGGC-------CCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEE
T ss_pred             ---cccccccccch--------hhhhhccC-------CcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEE
Confidence               00000000000        00000000       01256777777765433 334567789999999 999887766


Q ss_pred             C------Cc-EEEEecCCCCCCCCCCCcccccCcc--cCeEEEEecCC-e-EEEEecCCC----cEEEEeCCCccccccc
Q 010784          365 I------GK-AMTWDIRRSQDAVKPQPMAELDGHV--GSVTQLHMDPY-K-IVTGGRDDL----RINIWETDTGMLANSL  429 (501)
Q Consensus       365 ~------d~-i~iwd~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~-~-~l~~gs~dg----~i~iwd~~~~~~~~~~  429 (501)
                      .      .. |.++|....+.       ..+..+.  ..+..++|+|+ + ++..+..++    .|++||+.+++.....
T Consensus       208 ~~~~~~~~~~l~~~d~~~~~~-------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~  280 (388)
T 3pe7_A          208 EGPHDLVDARMWLINEDGTNM-------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLT  280 (388)
T ss_dssp             CSCTTTSSCSEEEEETTSCCC-------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEE
T ss_pred             ecCCCCCcceEEEEeCCCCce-------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEE
Confidence            3      23 88888765432       3333333  35788899999 5 434332222    3999999988743222


Q ss_pred             ccCCCCCCC---cceeeeEeeccccEEEEeec-------CCCceEEEeeccCCccc
Q 010784          430 LCNYPEEAD---ISTGCSAMAVSGCRIVTASY-------GEPGLLQFRDFSNATCP  475 (501)
Q Consensus       430 ~~~~~~~~~---~~v~~~~~s~~g~~l~s~~~-------d~~g~i~~w~~~~~~~~  475 (501)
                      ..   .++.   ......+|+|||+.|+....       +.+..|++||+..+...
T Consensus       281 ~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (388)
T 3pe7_A          281 SM---PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH  333 (388)
T ss_dssp             EE---CCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE
T ss_pred             cC---CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence            11   1100   01233479999998886431       24578999998776543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=9.4e-15  Score=148.47  Aligned_cols=251  Identities=10%  Similarity=-0.024  Sum_probs=165.1

Q ss_pred             ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe--eCCCceEEec--CCceeeeccCCCCceE---------EE
Q 010784          146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS--SCDHSIRLWW--KGSCQRCFKGHNGPVS---------TL  212 (501)
Q Consensus       146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~--~~dg~i~vwd--~~~~~~~~~~h~~~v~---------~l  212 (501)
                      ...+.+|...|..++|++             ++-++++.  +.++...||.  .+.....+..|...+.         ..
T Consensus        16 ~~~~~~~~~~~~~~~~s~-------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   82 (662)
T 3azo_A           16 AALVASRSGRPACVGAVG-------------DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPW   82 (662)
T ss_dssp             HHHHHHTCSCCEEEEEET-------------TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCE
T ss_pred             HHHHhhcCCccceeEEcC-------------CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccc
Confidence            345678999999999998             66677776  5688899997  4445566666666655         55


Q ss_pred             EeeecCCCCCCE-EEEeeC-CCcEEEEecc--C-CCccccccceeeccC-----CCCceeEEEEeecCCeEEEEEeCC--
Q 010784          213 SDKLLGDGSGKI-LASGGE-DATVRLWSLS--S-SGKRGQQALKATLYG-----HEKPIKLMSVAGHKSFLLVTISKD--  280 (501)
Q Consensus       213 ~~s~~~~~~~~~-l~sg~~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~~l~s~s~d--  280 (501)
                      .|+  .+|+|+. |+.++. +..|.++++.  . +.       ...+..     |...+..++|+| +++.|++++.+  
T Consensus        83 ~~~--~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-------~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~  152 (662)
T 3azo_A           83 AGV--PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-------PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFT  152 (662)
T ss_dssp             EEE--CCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-------CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEEC
T ss_pred             eee--eecCCCeEEEEEECCCCeEEEEcCCCCCCCC-------CEeccCCccCCCCccccCcEECC-CCCEEEEEEeccc
Confidence            553  1267887 665443 5566666665  2 32       334444     667888999998 77788888766  


Q ss_pred             --------CeEEEEECCC------CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec-cCC
Q 010784          281 --------SKVRVWDTST------SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-ICK  345 (501)
Q Consensus       281 --------g~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~  345 (501)
                              ..|++||+.+      ++.                                             ..+. .+.
T Consensus       153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------------------------------------~~l~~~~~  187 (662)
T 3azo_A          153 GEGPSDVRRFLAAVPLDGSAAADRSAV---------------------------------------------RELSDDAH  187 (662)
T ss_dssp             SSSTTCEEEEEEEEETTSTTTTCGGGS---------------------------------------------EESSCSCS
T ss_pred             CCCCCCceeEEEEEECCCCccccCCce---------------------------------------------eEEEecCC
Confidence                    4677777765      321                                             1222 344


Q ss_pred             CcEEEEEEcCCCcEEEEEc-CC-------c-EEEEecC-CCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC-
Q 010784          346 PILHSFSIMPSKSLICTGG-IG-------K-AMTWDIR-RSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL-  413 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~-~d-------~-i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg-  413 (501)
                      ..+..++|+|||++|+.++ ++       . |++||+. +++..   .......+|...+..+.|+|+ +++++++.++ 
T Consensus       188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~  264 (662)
T 3azo_A          188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW  264 (662)
T ss_dssp             SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---EEEEEEEETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred             CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---ccEEeCCCCCceEcceEECCCCeEEEEECCCCC
Confidence            5677889999999998776 32       5 9999998 45100   011223345678999999999 8877777788 


Q ss_pred             -cEEEEeCCCcccccccccCCCCCCC---cceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          414 -RINIWETDTGMLANSLLCNYPEEAD---ISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       414 -~i~iwd~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                       .|.+||+.+++.......+......   -.+..++|+++++++++++  . +.+++|.+.
T Consensus       265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~d  322 (662)
T 3azo_A          265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG--K-GAAVLGILD  322 (662)
T ss_dssp             CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB--S-SSCEEEEEE
T ss_pred             eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE--c-CccEEEEEE
Confidence             6667776666654433211100000   0156789999999999987  6 888888443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=4.3e-13  Score=131.37  Aligned_cols=330  Identities=10%  Similarity=0.045  Sum_probs=211.5

Q ss_pred             eeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC--
Q 010784          118 LDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK--  195 (501)
Q Consensus       118 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~--  195 (501)
                      .++.+.++++...++.|.++|..++ +.+.++... ..+..+.|+|             +|+++++++.|+.|.+||.  
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~-~v~~~i~~g-~~p~~v~~Sp-------------DGr~lyv~~~dg~V~viD~~~  227 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTY-EIKTVLDTG-YAVHISRLSA-------------SGRYLFVIGRDGKVNMIDLWM  227 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTC-CEEEEEECS-SCEEEEEECT-------------TSCEEEEEETTSEEEEEETTS
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCC-eEEEEEeCC-CCccceEECC-------------CCCEEEEEcCCCeEEEEECCC
Confidence            5567788889999999999999985 677666543 3567899999             8999999999999999993  


Q ss_pred             --CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeeccC----------CCC-ce
Q 010784          196 --GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYG----------HEK-PI  261 (501)
Q Consensus       196 --~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~~-~v  261 (501)
                        ++.+..+... .....++|++.+.++|++++++.. +++|.++|..+.+.      +..+..          |.. .+
T Consensus       228 ~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~------~~~i~~~~~~~~~~~~~p~~rv  300 (567)
T 1qks_A          228 KEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP------KKIQSTRGMTYDEQEYHPEPRV  300 (567)
T ss_dssp             SSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE------EEEEECCEECTTTCCEESCCCE
T ss_pred             CCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE------EEEEeccccccccccccCCCce
Confidence              3445555543 345788886111148888887765 58999999888663      333221          222 57


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC--CeEEEEeC--CcEEEEEcCCCce
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE--SMLYIASG--SSVVTIDLRTMQK  337 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~i~~~d~~~~~~  337 (501)
                      ..+..++.....++....+|.|.++|....+....    ........+..+.+++  ..++++..  +.|.++|+.+++.
T Consensus       301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v----~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl  376 (567)
T 1qks_A          301 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT----TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL  376 (567)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE----EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee----eeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence            77888875666777777889999999877542211    1112222333444444  44455543  4899999999988


Q ss_pred             Eeeecc-----CCCcEEEEEEcCC-CcEEEEEc-CCc-EEEEecCCCCCC-CCCCCcccccCcccCeEEEEecCC-eEEE
Q 010784          338 VMTPAI-----CKPILHSFSIMPS-KSLICTGG-IGK-AMTWDIRRSQDA-VKPQPMAELDGHVGSVTQLHMDPY-KIVT  407 (501)
Q Consensus       338 ~~~~~~-----~~~~v~~v~~~~~-~~~l~~~~-~d~-i~iwd~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~-~~l~  407 (501)
                      +..+..     |.+.-..+ ++|+ +..++++. .++ |.++|..+.+.. ...+.+.++......-..+..+|+ +.+.
T Consensus       377 ~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~  455 (567)
T 1qks_A          377 VAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY  455 (567)
T ss_dssp             EEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred             EEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEE
Confidence            765543     33222222 5787 55555554 334 999999873210 012334555544333355778999 4444


Q ss_pred             EecC-------CCcEEEEeCCCc-----ccc-cccccC---CCCCCCcceeeeEeeccccEEEEeec---CCCceEEEee
Q 010784          408 GGRD-------DLRINIWETDTG-----MLA-NSLLCN---YPEEADISTGCSAMAVSGCRIVTASY---GEPGLLQFRD  468 (501)
Q Consensus       408 ~gs~-------dg~i~iwd~~~~-----~~~-~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~---d~~g~i~~w~  468 (501)
                      ....       .++|.++|+.+.     ... ..+...   ........+..+.|+++|+.+..+..   +.++.|.++|
T Consensus       456 v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          456 VDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             EECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             EecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence            4322       358999999876     211 222100   00112356888999999998877643   2468999999


Q ss_pred             ccCCcc
Q 010784          469 FSNATC  474 (501)
Q Consensus       469 ~~~~~~  474 (501)
                      ..+...
T Consensus       536 ~~t~~~  541 (567)
T 1qks_A          536 DKTLEL  541 (567)
T ss_dssp             TTTTEE
T ss_pred             CCCceE
Confidence            887653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.65  E-value=2e-12  Score=117.27  Aligned_cols=276  Identities=7%  Similarity=-0.004  Sum_probs=187.4

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      ..+.+++++++|.++++...++.+.+||.. +......+..+...+.++++.+             ++.++++...++.|
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-------------~g~l~v~~~~~~~i   80 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-------------DGEVWFTENAANKI   80 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-------------TSCEEEEETTTTEE
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-------------CCCEEEeCCCCCeE
Confidence            458899999999988887778899999987 3222222234556789999988             78888887778899


Q ss_pred             EEec-CCceeeec--cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784          191 RLWW-KGSCQRCF--KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA  267 (501)
Q Consensus       191 ~vwd-~~~~~~~~--~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  267 (501)
                      ..|| .++ ...+  ......+.++++.    +++.++++...++.|.+||. ++..     .......+...+..+++.
T Consensus        81 ~~~~~~g~-~~~~~~~~~~~~~~~i~~~----~~g~l~v~~~~~~~i~~~d~-~g~~-----~~~~~~~~~~~~~~i~~~  149 (299)
T 2z2n_A           81 GRITKKGI-IKEYTLPNPDSAPYGITEG----PNGDIWFTEMNGNRIGRITD-DGKI-----REYELPNKGSYPSFITLG  149 (299)
T ss_dssp             EEECTTSC-EEEEECSSTTCCEEEEEEC----TTSCEEEEETTTTEEEEECT-TCCE-----EEEECSSTTCCEEEEEEC
T ss_pred             EEECCCCc-EEEEeCCCcCCCceeeEEC----CCCCEEEEecCCceEEEECC-CCCE-----EEecCCCCCCCCceEEEc
Confidence            9998 433 2222  2345578889885    78888887777889999998 4432     112223345567889998


Q ss_pred             ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCc
Q 010784          268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPI  347 (501)
Q Consensus       268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  347 (501)
                      + ++.++++...++.|..||. +++...                                           .........
T Consensus       150 ~-~g~l~v~~~~~~~i~~~~~-~g~~~~-------------------------------------------~~~~~~~~~  184 (299)
T 2z2n_A          150 S-DNALWFTENQNNAIGRITE-SGDITE-------------------------------------------FKIPTPASG  184 (299)
T ss_dssp             T-TSCEEEEETTTTEEEEECT-TCCEEE-------------------------------------------EECSSTTCC
T ss_pred             C-CCCEEEEeCCCCEEEEEcC-CCcEEE-------------------------------------------eeCCCCCCc
Confidence            6 6677776666788999988 543210                                           001122345


Q ss_pred             EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784          348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML  425 (501)
Q Consensus       348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~  425 (501)
                      +.+++++++|+++++...++ |.+||. +++..     ......+...+.+++++++ .++++...++.|.+||. +++.
T Consensus       185 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~  257 (299)
T 2z2n_A          185 PVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-----EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII  257 (299)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-----EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE
T ss_pred             ceeEEECCCCCEEEEccCCceEEEECC-CCcEE-----EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce
Confidence            78899999999887776555 999998 54421     1122334567899999998 87777667889999998 4442


Q ss_pred             ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                       ..+..   ..+...+.++++ ++|++.++..   .+.|..++...
T Consensus       258 -~~~~~---~~~~~~~~~i~~-~~g~l~v~~~---~~~l~~~~~~~  295 (299)
T 2z2n_A          258 -EEYPI---QIKSAEPHGICF-DGETIWFAME---CDKIGKLTLIK  295 (299)
T ss_dssp             -EEEEC---SSSSCCEEEEEE-CSSCEEEEET---TTEEEEEEEC-
T ss_pred             -EEEeC---CCCCCccceEEe-cCCCEEEEec---CCcEEEEEcCc
Confidence             23311   123456888999 8888777764   25666666544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.64  E-value=1.8e-13  Score=122.31  Aligned_cols=238  Identities=8%  Similarity=-0.022  Sum_probs=163.0

Q ss_pred             CCceEEeeCCcEEEe-ecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          112 PHDHILLDNNDIFST-QGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~-~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      .+..++++++|.+++ +...++.|.+|+..+. ........+...+.++++.+             +++++++.. ++.|
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~-------------~g~l~v~~~-~~~i   89 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDG-------------AGTVYVTDF-NNRV   89 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECT-------------TCCEEEEET-TTEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECC-------------CCCEEEEcC-CCEE
Confidence            467899999999888 6677889999997653 22222223445688899988             778777666 8899


Q ss_pred             EEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784          191 RLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG  268 (501)
Q Consensus       191 ~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~  268 (501)
                      .+|| .+.....+. .....+.++++.    ++++++++...++.|.+|+..+...      ..........+..+++.+
T Consensus        90 ~~~d~~~~~~~~~~~~~~~~p~~i~~~----~~g~l~v~~~~~~~i~~~~~~~~~~------~~~~~~~~~~p~~i~~~~  159 (270)
T 1rwi_B           90 VTLAAGSNNQTVLPFDGLNYPEGLAVD----TQGAVYVADRGNNRVVKLAAGSKTQ------TVLPFTGLNDPDGVAVDN  159 (270)
T ss_dssp             EEECTTCSCCEECCCCSCSSEEEEEEC----TTCCEEEEEGGGTEEEEECTTCCSC------EECCCCSCCSCCCEEECT
T ss_pred             EEEeCCCceEeeeecCCcCCCcceEEC----CCCCEEEEECCCCEEEEEECCCcee------EeeccccCCCceeEEEeC
Confidence            9999 444444443 233568899985    7888888777788999997654432      111222334567889987


Q ss_pred             cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784          269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL  348 (501)
Q Consensus       269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v  348 (501)
                       +++++++...++.|.+||........                                            ....+...+
T Consensus       160 -~g~l~v~~~~~~~i~~~~~~~~~~~~--------------------------------------------~~~~~~~~p  194 (270)
T 1rwi_B          160 -SGNVYVTDTDNNRVVKLEAESNNQVV--------------------------------------------LPFTDITAP  194 (270)
T ss_dssp             -TCCEEEEEGGGTEEEEECTTTCCEEE--------------------------------------------CCCSSCCSE
T ss_pred             -CCCEEEEECCCCEEEEEecCCCceEe--------------------------------------------ecccCCCCc
Confidence             66777777777899999987653210                                            001122557


Q ss_pred             EEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784          349 HSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML  425 (501)
Q Consensus       349 ~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~  425 (501)
                      .+++++++|.++++...++ |.+||.......      .....+...+.+++++++ +++++...++.|++++....+.
T Consensus       195 ~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          195 WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST------VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEEEECTTCCEEEEETTTSCEEEECTTCSCCE------ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             eEEEECCCCCEEEEECCCCcEEEEcCCCCcce------eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            8899999998888877666 999998764322      111223356899999998 8888888999999999876554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.63  E-value=1.2e-13  Score=128.82  Aligned_cols=259  Identities=15%  Similarity=0.090  Sum_probs=171.3

Q ss_pred             eEEeeCCcEEEeecC----------CeeeEEEEecccccccceecccC------CcceeEEEeeccCcCcccccCCCCcC
Q 010784          115 HILLDNNDIFSTQGS----------SIQNIKIDNFLSESYYRATLSDH------KARITCMRLFPLHETSLFRSEPQRTE  178 (501)
Q Consensus       115 ~~~~~~~~~~~~~g~----------~d~~i~vw~~~~~~~~~~~~~~h------~~~V~~~~~~~~~~~~~~~~~~~~~~  178 (501)
                      .++++|+|+++.+++          .++.|.+||..+. +.+..+..+      ......++++|             +|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~-~~~~~i~~~~~~~~~g~~p~~i~~sp-------------dg  119 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL-TFEKEISLPPKRVQGLNYDGLFRQTT-------------DG  119 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC-CEEEEEEECTTBCCBCCCGGGEEECT-------------TS
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC-cEEEEEEcCccccccCCCcceEEECC-------------CC
Confidence            899999999888765          4788999999874 555555432      34567788988             89


Q ss_pred             cEEEEeeC--CCceEEec--CCceeee-ccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccc-cccce
Q 010784          179 NVLVTSSC--DHSIRLWW--KGSCQRC-FKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRG-QQALK  251 (501)
Q Consensus       179 ~~l~s~~~--dg~i~vwd--~~~~~~~-~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~  251 (501)
                      ++|+++..  +++|.+||  +++.+.. +.. .+. ..+.+.    ++ ...+++.+.||.+.+|++....... .....
T Consensus       120 ~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~~-~~v~~~----p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~  193 (361)
T 2oiz_A          120 KFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AGC-WSVIPQ----PNRPRSFMTICGDGGLLTINLGEDGKVASQSRSK  193 (361)
T ss_dssp             SEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TTE-EEEEEC----TTSSSEEEEEETTSSEEEEEECTTSSEEEEEECC
T ss_pred             CEEEEECCCCCCeEEEEECCCCcEEEEEecC-CCc-ceeEEc----CCCCeeEEEECCCCcEEEEEECCCCcEeeecccc
Confidence            99988874  68999999  6666666 542 222 223343    33 3678888999999999987633200 00000


Q ss_pred             eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc--ceeccc-------ceecCCCceeeecCCCeEEEE
Q 010784          252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR--SSCCVG-------MTSVPGVPVDMKCHESMLYIA  322 (501)
Q Consensus       252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  322 (501)
                      ..+..+..++ .+.+.+ ++..++..+.++.|.++|+.......  ......       ........+.+..+...++++
T Consensus       194 ~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~  271 (361)
T 2oiz_A          194 QMFSVKDDPI-FIAPAL-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVF  271 (361)
T ss_dssp             CCSCTTTSCB-CSCCEE-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEE
T ss_pred             ceEcCCCCce-EEEecc-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEE
Confidence            1222333332 223344 44566667788999999997653211  000000       001111224455555667766


Q ss_pred             eC------------CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCC--CCCCCCCCcccc
Q 010784          323 SG------------SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRS--QDAVKPQPMAEL  388 (501)
Q Consensus       323 ~~------------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~--~~~~~~~~~~~~  388 (501)
                      ..            ..+.+||+.+++.+.++..+.  +.+++|+|+|++|++++.+.|.+||..++  +.+      .++
T Consensus       272 ~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~------~~i  343 (361)
T 2oiz_A          272 MHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLL------RTI  343 (361)
T ss_dssp             EESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEE------EEE
T ss_pred             EccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceee------EEe
Confidence            42            379999999999999998876  89999999999999888733999999997  543      665


Q ss_pred             cCcccCeEEEEecCC
Q 010784          389 DGHVGSVTQLHMDPY  403 (501)
Q Consensus       389 ~~h~~~v~~l~~~~~  403 (501)
                      ..+......++++|+
T Consensus       344 ~~~G~~P~~~~~~p~  358 (361)
T 2oiz_A          344 EGAAEASLQVQFHPV  358 (361)
T ss_dssp             TTSCSSEEEEEECCC
T ss_pred             ccCCCCcEEEEecCC
Confidence            556677788888886

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.63  E-value=8.7e-14  Score=129.39  Aligned_cols=253  Identities=11%  Similarity=-0.002  Sum_probs=158.5

Q ss_pred             CceEEeeCCcEEEeec---------CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          113 HDHILLDNNDIFSTQG---------SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g---------~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      +...++  ||.+++..         ..++.+.+|++.++ +. ..+    ..+..++|+|             ||+.|+.
T Consensus        17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~-~~-~~l----~~~~~~~~Sp-------------Dg~~la~   75 (347)
T 2gop_A           17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN-AR-RFI----ENATMPRISP-------------DGKKIAF   75 (347)
T ss_dssp             EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC-CE-EEE----ESCEEEEECT-------------TSSEEEE
T ss_pred             cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC-ce-EEc----ccCCCeEECC-------------CCCEEEE
Confidence            445556  66666543         23778999998875 33 233    5688899999             8898888


Q ss_pred             eeCC---Cc--eEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC-------------------------
Q 010784          184 SSCD---HS--IRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED-------------------------  231 (501)
Q Consensus       184 ~~~d---g~--i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d-------------------------  231 (501)
                      ++.+   +.  |.+||  .++...... +.. +..+.|+    |+|+.|+.++.+                         
T Consensus        76 ~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~ws----pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  149 (347)
T 2gop_A           76 MRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWN----EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG  149 (347)
T ss_dssp             EEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEEC----TTSSEEEEEEECCCC---------CCCC---------
T ss_pred             EEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeEC----CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence            7754   33  66677  344333333 334 8999997    899988887642                         


Q ss_pred             --CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC-------eEEEEECCCCccccceecccc
Q 010784          232 --ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS-------KVRVWDTSTSSAVRSSCCVGM  302 (501)
Q Consensus       232 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg-------~v~vwd~~~~~~~~~~~~~~~  302 (501)
                        ..|.+||+.+++      .+..+.. . .+..+.|+| ++ +++++..++       ...+|.+.++           
T Consensus       150 ~~~~l~~~d~~~~~------~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~-----------  208 (347)
T 2gop_A          150 EKTTFWIFDTESEE------VIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDG-----------  208 (347)
T ss_dssp             CEEEEEEEETTTTE------EEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETT-----------
T ss_pred             ccceEEEEECCCCe------EEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCC-----------
Confidence              578899998764      1133333 3 678889997 56 777665542       2222222221           


Q ss_pred             eecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-C-------Cc-EEEEec
Q 010784          303 TSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-I-------GK-AMTWDI  373 (501)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~-------d~-i~iwd~  373 (501)
                                                       + ...+..+ ..+..+  +|+|+.|+.++ .       .. |.+|| 
T Consensus       209 ---------------------------------~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-  250 (347)
T 2gop_A          209 ---------------------------------K-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-  250 (347)
T ss_dssp             ---------------------------------E-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-
T ss_pred             ---------------------------------c-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-
Confidence                                             1 1112222 334444  89998877665 2       23 88888 


Q ss_pred             CCCCCCCCCCCcccccCcccCeEE-EEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784          374 RRSQDAVKPQPMAELDGHVGSVTQ-LHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR  452 (501)
Q Consensus       374 ~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  452 (501)
                       +++.      ......|...+.. +.|+ +.++++++.++.++|| +.+++....+      .+...+..++|+|  .+
T Consensus       251 -~~~~------~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~~~~------~~~~~v~~~~~s~--~~  313 (347)
T 2gop_A          251 -GKEV------MGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIKPIA------KGRHWIMGFDVDE--IV  313 (347)
T ss_dssp             -SSCE------EESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEEEEE------CSSSEEEEEEESS--SE
T ss_pred             -CCce------EeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceEEEe------cCCCeEEeeeeeC--cE
Confidence             3332      1333455667876 8999 7677777789999999 8766553333      2356788999999  67


Q ss_pred             EEEeecCCCceE-EEeecc
Q 010784          453 IVTASYGEPGLL-QFRDFS  470 (501)
Q Consensus       453 l~s~~~d~~g~i-~~w~~~  470 (501)
                      +++++.  ++.. .+|.+.
T Consensus       314 ~~~~~~--~~~~~~l~~~~  330 (347)
T 2gop_A          314 VYLKET--ATRLRELFTWD  330 (347)
T ss_dssp             EEEEEC--SSSCCEEEEES
T ss_pred             EEEEcC--CCChHHheEeC
Confidence            777663  3443 666665

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=2.1e-13  Score=123.75  Aligned_cols=228  Identities=11%  Similarity=0.082  Sum_probs=156.1

Q ss_pred             ceecccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCC
Q 010784          146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGK  223 (501)
Q Consensus       146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~  223 (501)
                      +..+..+.....+++|+|             +++ +++++..++.|..|| .+. ...+..+...+.+++++    ++|+
T Consensus        20 ~~~l~~~~~~~eg~~~d~-------------~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~----~dg~   81 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVP-------------ARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLN----KQGH   81 (296)
T ss_dssp             CEEEECCCSSEEEEEEEG-------------GGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEEC----TTCC
T ss_pred             EEEEecCCccccCCeEeC-------------CCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeEC----CCCc
Confidence            344555666788999999             777 788888899999999 444 66777778889999996    7888


Q ss_pred             EEEEeeCCCcEEEEeccCCCccccccceeecc---C-CCCceeEEEEeecCCeEEEEEeC-----------------CCe
Q 010784          224 ILASGGEDATVRLWSLSSSGKRGQQALKATLY---G-HEKPIKLMSVAGHKSFLLVTISK-----------------DSK  282 (501)
Q Consensus       224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~-~~~~v~~l~~~~~~~~~l~s~s~-----------------dg~  282 (501)
                      ++++...++.|.+||..++..      .....   . ....+..+++++ +++++++.+.                 .+.
T Consensus        82 l~v~~~~~~~i~~~d~~~g~~------~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~  154 (296)
T 3e5z_A           82 LIACSHGLRRLERQREPGGEW------ESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRW  154 (296)
T ss_dssp             EEEEETTTTEEEEECSTTCCE------EEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred             EEEEecCCCeEEEEcCCCCcE------EEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcE
Confidence            888777778999999977652      11111   1 123456788886 6777776321                 123


Q ss_pred             EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEE
Q 010784          283 VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICT  362 (501)
Q Consensus       283 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  362 (501)
                      |..++.. +                                             ....+..+......++|+|+++++++
T Consensus       155 l~~~~~~-g---------------------------------------------~~~~~~~~~~~~~gi~~s~dg~~lv~  188 (296)
T 3e5z_A          155 VFRLAPD-G---------------------------------------------TLSAPIRDRVKPNGLAFLPSGNLLVS  188 (296)
T ss_dssp             EEEECTT-S---------------------------------------------CEEEEECCCSSEEEEEECTTSCEEEE
T ss_pred             EEEECCC-C---------------------------------------------CEEEeecCCCCCccEEECCCCCEEEE
Confidence            3333322 1                                             11222234556789999999998877


Q ss_pred             EcCCc-EEEEecC-CCCC-CCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCC
Q 010784          363 GGIGK-AMTWDIR-RSQD-AVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEAD  438 (501)
Q Consensus       363 ~~~d~-i~iwd~~-~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~  438 (501)
                      .+.++ |.+|++. .++. .    ....+..+...+..++++++ +++++.  ++.|.+||.. ++.+..+.     .+.
T Consensus       189 ~~~~~~i~~~~~~~~g~~~~----~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~-----~~~  256 (296)
T 3e5z_A          189 DTGDNATHRYCLNARGETEY----QGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL-----TPQ  256 (296)
T ss_dssp             ETTTTEEEEEEECSSSCEEE----EEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE-----CSS
T ss_pred             eCCCCeEEEEEECCCCcCcC----CCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE-----CCC
Confidence            77666 9999987 3321 0    01122234556778999999 877775  7889999986 77777773     233


Q ss_pred             cceeeeEe-eccccEEEEee
Q 010784          439 ISTGCSAM-AVSGCRIVTAS  457 (501)
Q Consensus       439 ~~v~~~~~-s~~g~~l~s~~  457 (501)
                      . +.+++| +|+++.|++++
T Consensus       257 ~-~~~~~f~~~d~~~L~v~t  275 (296)
T 3e5z_A          257 T-TSNLCFGGPEGRTLYMTV  275 (296)
T ss_dssp             C-CCEEEEESTTSCEEEEEE
T ss_pred             C-ceeEEEECCCCCEEEEEc
Confidence            4 888999 58999888887

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.61  E-value=7.7e-13  Score=121.65  Aligned_cols=258  Identities=9%  Similarity=0.006  Sum_probs=172.1

Q ss_pred             CCCceEEec--CCceeeecc------CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          186 CDHSIRLWW--KGSCQRCFK------GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       186 ~dg~i~vwd--~~~~~~~~~------~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      .+++|.++|  +++....+.      ........+.+.     ++.++++...++.|.+||..+++.      +..+. .
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-----~~~lyv~~~~~~~v~viD~~t~~~------~~~i~-~   82 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-----DGIGWIVVNNSHVIFAIDINTFKE------VGRIT-G   82 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-----TTEEEEEEGGGTEEEEEETTTCCE------EEEEE-C
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-----CCEEEEEEcCCCEEEEEECcccEE------EEEcC-C
Confidence            488999999  555544331      122345677763     455666666789999999998763      45554 3


Q ss_pred             CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe---CCcEEEEEcCC
Q 010784          258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS---GSSVVTIDLRT  334 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~  334 (501)
                      ......+++++ ++..+++...++.|.+||..+++................+..+......++++.   ++.|.++|+.+
T Consensus        83 ~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t  161 (328)
T 3dsm_A           83 FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTET  161 (328)
T ss_dssp             CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTT
T ss_pred             CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCC
Confidence            45678899987 566555555899999999998865433221110000114445555677777775   45899999999


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCC----------c-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecC
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIG----------K-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDP  402 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----------~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~  402 (501)
                      ++.+..+... .....+.++|+|++++++..+          + |.++|..+.+..      ..+... ......++++|
T Consensus       162 ~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~------~~~~~~~g~~p~~la~~~  234 (328)
T 3dsm_A          162 DKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE------KQFKFKLGDWPSEVQLNG  234 (328)
T ss_dssp             TEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE------EEEECCTTCCCEEEEECT
T ss_pred             CeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE------EEEecCCCCCceeEEEec
Confidence            9888777653 345688999999988877654          5 999999886543      333221 23688999999


Q ss_pred             C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecc-ccEEEEe----ecCCCceEEEeecc
Q 010784          403 Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS-GCRIVTA----SYGEPGLLQFRDFS  470 (501)
Q Consensus       403 ~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~s~----~~d~~g~i~~w~~~  470 (501)
                      + +.+..+..  .|.+||..+++.......   .........++++|+ +.+.++.    .  .++.|.+||..
T Consensus       235 d~~~lyv~~~--~v~~~d~~t~~~~~~~~~---~~~~~~p~gi~vdp~~g~lyva~~~~y~--~~~~V~v~d~~  301 (328)
T 3dsm_A          235 TRDTLYWINN--DIWRMPVEADRVPVRPFL---EFRDTKYYGLTVNPNNGEVYVADAIDYQ--QQGIVYRYSPQ  301 (328)
T ss_dssp             TSCEEEEESS--SEEEEETTCSSCCSSCSB---CCCSSCEEEEEECTTTCCEEEEECTTSS--SEEEEEEECTT
T ss_pred             CCCEEEEEcc--EEEEEECCCCceeeeeee---cCCCCceEEEEEcCCCCeEEEEcccccc--cCCEEEEECCC
Confidence            7 54444323  899999998876432110   111356788999995 5555554    3  56899999987

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.61  E-value=2.3e-12  Score=118.50  Aligned_cols=261  Identities=8%  Similarity=-0.019  Sum_probs=178.4

Q ss_pred             CeeeEEEEecccccccceecc------cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeee
Q 010784          130 SIQNIKIDNFLSESYYRATLS------DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRC  201 (501)
Q Consensus       130 ~d~~i~vw~~~~~~~~~~~~~------~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~  201 (501)
                      .++.|.++|..++ +....+.      ........+.+.              ++.++++...++.|.+||  +++.+.+
T Consensus        15 ~~~~l~~~d~~t~-~~~~~i~~~~n~~~lg~~~~~i~~~--------------~~~lyv~~~~~~~v~viD~~t~~~~~~   79 (328)
T 3dsm_A           15 SNATLSYYDPATC-EVENEVFYRANGFKLGDVAQSMVIR--------------DGIGWIVVNNSHVIFAIDINTFKEVGR   79 (328)
T ss_dssp             CCBEEEEEETTTT-EEECSHHHHHHSSCCBSCEEEEEEE--------------TTEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred             CCceEEEEECCCC-EEhhhhHhhhcCcccCccceEEEEE--------------CCEEEEEEcCCCEEEEEECcccEEEEE
Confidence            4899999999985 4444331      122346777775              356777777789999999  6777777


Q ss_pred             ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC-----CceeEEEEeecCCeEEEE
Q 010784          202 FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE-----KPIKLMSVAGHKSFLLVT  276 (501)
Q Consensus       202 ~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~~l~s  276 (501)
                      +. .......++++    +++.++++...++.|.+||..++..      ...+....     .....+++.  ++.++++
T Consensus        80 i~-~~~~p~~i~~~----~~g~lyv~~~~~~~v~~iD~~t~~~------~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~  146 (328)
T 3dsm_A           80 IT-GFTSPRYIHFL----SDEKAYVTQIWDYRIFIINPKTYEI------TGYIECPDMDMESGSTEQMVQY--GKYVYVN  146 (328)
T ss_dssp             EE-CCSSEEEEEEE----ETTEEEEEEBSCSEEEEEETTTTEE------EEEEECTTCCTTTCBCCCEEEE--TTEEEEE
T ss_pred             cC-CCCCCcEEEEe----CCCeEEEEECCCCeEEEEECCCCeE------EEEEEcCCccccCCCcceEEEE--CCEEEEE
Confidence            75 34667889986    5665544444789999999988753      33333222     144566662  5666665


Q ss_pred             Ee-CCCeEEEEECCCCccccceecccceecCCCceeeecCCCe-EEEEeC------------CcEEEEEcCCCceEeeec
Q 010784          277 IS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIASG------------SSVVTIDLRTMQKVMTPA  342 (501)
Q Consensus       277 ~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------~~i~~~d~~~~~~~~~~~  342 (501)
                      .. .++.|.++|+.+++.+...      .....+..+..+++. +++++.            +.+.++|..+++....+.
T Consensus       147 ~~~~~~~v~viD~~t~~~~~~i------~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~  220 (328)
T 3dsm_A          147 CWSYQNRILKIDTETDKVVDEL------TIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK  220 (328)
T ss_dssp             ECTTCCEEEEEETTTTEEEEEE------ECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCCEEEEEECCCCeEEEEE------EcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence            54 4899999999988654432      223344555555543 444443            369999999988776665


Q ss_pred             cC-CCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEe----cCCCcE
Q 010784          343 IC-KPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGG----RDDLRI  415 (501)
Q Consensus       343 ~~-~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~g----s~dg~i  415 (501)
                      .. ......++++|+++.++++.. .|.+||..+++..  ..  ..+.........++++|+  .++++.    ..++.|
T Consensus       221 ~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~--~~--~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V  295 (328)
T 3dsm_A          221 FKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVP--VR--PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV  295 (328)
T ss_dssp             CCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCC--SS--CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred             cCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCcee--ee--eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence            32 246889999999888887765 7999999887643  11  112222456889999994  788876    678999


Q ss_pred             EEEeCCCcccccccc
Q 010784          416 NIWETDTGMLANSLL  430 (501)
Q Consensus       416 ~iwd~~~~~~~~~~~  430 (501)
                      .+||.. ++.+.++.
T Consensus       296 ~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          296 YRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEECTT-CCEEEEEE
T ss_pred             EEECCC-CCEEEEEE
Confidence            999998 88888884

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=9.4e-14  Score=141.58  Aligned_cols=248  Identities=7%  Similarity=-0.072  Sum_probs=158.9

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEE-----EeeCCCceEEec--CCceeeeccCCCCce--EEEEeeecCCCC
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLV-----TSSCDHSIRLWW--KGSCQRCFKGHNGPV--STLSDKLLGDGS  221 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~-----s~~~dg~i~vwd--~~~~~~~~~~h~~~v--~~l~~s~~~~~~  221 (501)
                      +|...+..++|||             ||++|+     .|+.+.+|++||  +++.+.  ..+...+  ..++|+    ++
T Consensus       118 ~~~~~~~~~~~SP-------------DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~ws----pD  178 (695)
T 2bkl_A          118 DGTVSLGTWAVSW-------------DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWT----PD  178 (695)
T ss_dssp             SSCEEEEEEEECT-------------TSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEEC----TT
T ss_pred             CCCEEEEEEEECC-------------CCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEe----cC
Confidence            5666799999999             889998     555567899999  444331  1122222  678897    89


Q ss_pred             CCEEEEeeCCCc-------------EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC----eEE
Q 010784          222 GKILASGGEDAT-------------VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS----KVR  284 (501)
Q Consensus       222 ~~~l~sg~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg----~v~  284 (501)
                      |+.|+.++.|..             |++|++.++..  ...++.....|...+..+.++| ++++|+.++.++    .|.
T Consensus       179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~--~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS--KDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVY  255 (695)
T ss_dssp             SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG--GCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEE
T ss_pred             CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch--hceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEE
Confidence            999999888776             99999987652  1113334445666788999998 667777666555    566


Q ss_pred             EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784          285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG  364 (501)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  364 (501)
                      +|+..+++.                                             ..+..+...+....+ ++|.+++.+.
T Consensus       256 ~~~~~~~~~---------------------------------------------~~l~~~~~~~~~~~~-~~g~l~~~s~  289 (695)
T 2bkl_A          256 WKRPGEKDF---------------------------------------------RLLVKGVGAKYEVHA-WKDRFYVLTD  289 (695)
T ss_dssp             EECTTCSSC---------------------------------------------EEEEECSSCCEEEEE-ETTEEEEEEC
T ss_pred             EEcCCCCce---------------------------------------------EEeecCCCceEEEEe-cCCcEEEEEC
Confidence            665433321                                             112223334444555 5555444444


Q ss_pred             ---CCc-EEEEecCCCCCCCCCCCcccccCc--ccCeEEEEecCCeEEEEecCCCcEEEEeCC-CcccccccccCCCCCC
Q 010784          365 ---IGK-AMTWDIRRSQDAVKPQPMAELDGH--VGSVTQLHMDPYKIVTGGRDDLRINIWETD-TGMLANSLLCNYPEEA  437 (501)
Q Consensus       365 ---~d~-i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~  437 (501)
                         .+. |.+||+.+++..    ....+..+  ...+..++++.+.++++...|+..+||.+. +++....+..    ..
T Consensus       290 ~~~~~~~l~~~d~~~~~~~----~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~----~~  361 (695)
T 2bkl_A          290 EGAPRQRVFEVDPAKPARA----SWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQL----PG  361 (695)
T ss_dssp             TTCTTCEEEEEBTTBCSGG----GCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCC----SS
T ss_pred             CCCCCCEEEEEeCCCCCcc----CCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecC----CC
Confidence               235 999999775420    01223222  445788888855888888899998888665 4555555531    12


Q ss_pred             CcceeeeEeeccccEEEEee--cCCCceEEEeeccCCcc
Q 010784          438 DISTGCSAMAVSGCRIVTAS--YGEPGLLQFRDFSNATC  474 (501)
Q Consensus       438 ~~~v~~~~~s~~g~~l~s~~--~d~~g~i~~w~~~~~~~  474 (501)
                      ...+..++++|+++.++...  ....+.|++||+..+..
T Consensus       362 ~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          362 VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            45678889999998776332  11457899999877654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=7e-13  Score=118.44  Aligned_cols=236  Identities=8%  Similarity=-0.026  Sum_probs=159.9

Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEE-EeeCCCceEEecCC-ceeeec-cCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLV-TSSCDHSIRLWWKG-SCQRCF-KGHNGPVSTLSDKLLGDGSGKILASGGED  231 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~dg~i~vwd~~-~~~~~~-~~h~~~v~~l~~s~~~~~~~~~l~sg~~d  231 (501)
                      ...++++++             ++++++ +...++.|.+||.+ .....+ ..+...+.++++.    ++++++++.. +
T Consensus        25 ~p~~i~~~~-------------~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~----~~g~l~v~~~-~   86 (270)
T 1rwi_B           25 SPSGVAVDS-------------AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD----GAGTVYVTDF-N   86 (270)
T ss_dssp             CEEEEEECT-------------TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEEC----TTCCEEEEET-T
T ss_pred             CccceEECC-------------CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEEC----CCCCEEEEcC-C
Confidence            677888888             788777 55778999999832 222222 2333567788885    7788666655 8


Q ss_pred             CcEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784          232 ATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV  310 (501)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  310 (501)
                      +.|.+||......       ..+. .....+..+++.+ ++.++++...++.|.+|+..+.....               
T Consensus        87 ~~i~~~d~~~~~~-------~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~---------------  143 (270)
T 1rwi_B           87 NRVVTLAAGSNNQ-------TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTV---------------  143 (270)
T ss_dssp             TEEEEECTTCSCC-------EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEE---------------
T ss_pred             CEEEEEeCCCceE-------eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEe---------------
Confidence            8999999876542       2222 2335678999987 66777777778889999754432100               


Q ss_pred             eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc
Q 010784          311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD  389 (501)
Q Consensus       311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~  389 (501)
                                                   ........+.+++++++|+++++...++ |.+||.......      ....
T Consensus       144 -----------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~------~~~~  188 (270)
T 1rwi_B          144 -----------------------------LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV------VLPF  188 (270)
T ss_dssp             -----------------------------CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE------ECCC
T ss_pred             -----------------------------eccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE------eecc
Confidence                                         0011123456789999999887777665 999998765432      1122


Q ss_pred             CcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          390 GHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       390 ~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      .+...+..++++++ .++++...++.|.+|+........ ..    ..+...+.+++++++|+++++..  .++.|++++
T Consensus       189 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~----~~~~~~p~~i~~~~~g~l~v~~~--~~~~v~~~~  261 (270)
T 1rwi_B          189 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP----FTGLNTPLAVAVDSDRTVYVADR--GNDRVVKLT  261 (270)
T ss_dssp             SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC----CCSCSCEEEEEECTTCCEEEEEG--GGTEEEEEC
T ss_pred             cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec----cCCCCCceeEEECCCCCEEEEEC--CCCEEEEEc
Confidence            22366889999999 888887778999999986544332 21    12235678999999999777777  569999999


Q ss_pred             ccCCc
Q 010784          469 FSNAT  473 (501)
Q Consensus       469 ~~~~~  473 (501)
                      .....
T Consensus       262 ~~~~~  266 (270)
T 1rwi_B          262 SLEHH  266 (270)
T ss_dssp             CCGGG
T ss_pred             CCCcc
Confidence            87654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.59  E-value=5.4e-13  Score=119.01  Aligned_cols=231  Identities=11%  Similarity=0.040  Sum_probs=162.2

Q ss_pred             CCcEEEeecCCeeeEEEEecccccccceecccCC-cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCc
Q 010784          120 NNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHK-ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS  197 (501)
Q Consensus       120 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~  197 (501)
                      ..+.++++++.++.|.+||.++| +.+..+..+. ..+.++.++|             +|+++++  .++.|..|| +++
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~~~~~~p-------------dG~ilvs--~~~~V~~~d~~G~   66 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTK-EIVWEYPLEKGWECNSVAATK-------------AGEILFS--YSKGAKMITRDGR   66 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTT-EEEEEEECCTTCCCCEEEECT-------------TSCEEEE--CBSEEEEECTTSC
T ss_pred             CCCcEEEeeCCCCEEEEEECCCC-eEEEEeCCCccCCCcCeEECC-------------CCCEEEe--CCCCEEEECCCCC
Confidence            35688999999999999999886 7778887776 5789999999             8898883  477899999 888


Q ss_pred             eeeeccCCC-CceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeecc------CCCCceeEEEEeec
Q 010784          198 CQRCFKGHN-GPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLY------GHEKPIKLMSVAGH  269 (501)
Q Consensus       198 ~~~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~  269 (501)
                      .+..+..+. ..+.++.+.    ++|+++++.+. ++.|..+|.+ ++.      +..+.      .+......+++.+ 
T Consensus        67 ~~W~~~~~~~~~~~~~~~~----~dG~~lv~~~~~~~~v~~vd~~-Gk~------l~~~~~~~~~~~~~~~~~~v~~~~-  134 (276)
T 3no2_A           67 ELWNIAAPAGCEMQTARIL----PDGNALVAWCGHPSTILEVNMK-GEV------LSKTEFETGIERPHAQFRQINKNK-  134 (276)
T ss_dssp             EEEEEECCTTCEEEEEEEC----TTSCEEEEEESTTEEEEEECTT-SCE------EEEEEECCSCSSGGGSCSCCEECT-
T ss_pred             EEEEEcCCCCccccccEEC----CCCCEEEEecCCCCEEEEEeCC-CCE------EEEEeccCCCCcccccccCceECC-
Confidence            888887653 467788875    89999999887 7777777753 332      22221      1212344556665 


Q ss_pred             CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE
Q 010784          270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH  349 (501)
Q Consensus       270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~  349 (501)
                      +++++++...++.|..||.. ++.+.                                            ++... ..+.
T Consensus       135 ~G~~lv~~~~~~~v~~~d~~-G~~~w--------------------------------------------~~~~~-~~~~  168 (276)
T 3no2_A          135 KGNYLVPLFATSEVREIAPN-GQLLN--------------------------------------------SVKLS-GTPF  168 (276)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEE--------------------------------------------EEECS-SCCC
T ss_pred             CCCEEEEecCCCEEEEECCC-CCEEE--------------------------------------------EEECC-CCcc
Confidence            78899999999999999987 65322                                            22211 2344


Q ss_pred             EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc------ccCeEEEEecCC-eEEEEecCC--------C
Q 010784          350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH------VGSVTQLHMDPY-KIVTGGRDD--------L  413 (501)
Q Consensus       350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~-~~l~~gs~d--------g  413 (501)
                      ++...++|+++++++.++ |..+|..+++.+      .++..+      -..+..++..++ .++++.+..        +
T Consensus       169 ~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~------w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~  242 (276)
T 3no2_A          169 SSAFLDNGDCLVACGDAHCFVQLNLESNRIV------RRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGK  242 (276)
T ss_dssp             EEEECTTSCEEEECBTTSEEEEECTTTCCEE------EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSC
T ss_pred             ceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE------EEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccC
Confidence            577789999999988887 999999987754      444322      123677888888 777665211        1


Q ss_pred             cEEEEeC-CCcccccccc
Q 010784          414 RINIWET-DTGMLANSLL  430 (501)
Q Consensus       414 ~i~iwd~-~~~~~~~~~~  430 (501)
                      ..+++++ .+++.+-++.
T Consensus       243 ~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          243 HPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             CCSEEEECTTSBEEEEEC
T ss_pred             CceEEEECCCCCEEEEec
Confidence            3356665 4677666664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.58  E-value=5.5e-14  Score=133.24  Aligned_cols=270  Identities=10%  Similarity=-0.061  Sum_probs=162.4

Q ss_pred             ecccccccceecccCCcc-----eeEEEeeccCcCcccccCCCCcCcEEEEeeCC-C--ceEEec-CCceeeeccCCCCc
Q 010784          138 NFLSESYYRATLSDHKAR-----ITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-H--SIRLWW-KGSCQRCFKGHNGP  208 (501)
Q Consensus       138 ~~~~~~~~~~~~~~h~~~-----V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-g--~i~vwd-~~~~~~~~~~h~~~  208 (501)
                      |..++ ..+..+..+...     +..++|+|             +|++|+..... |  .|.+|| .+.....+..+...
T Consensus        16 d~~~g-~~~~~l~~~~~~~~~~~~~~~~~Sp-------------dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~   81 (396)
T 3c5m_A           16 DSDTQ-VKVTRLTPTDIICHRNYFYQKCFTQ-------------DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGD   81 (396)
T ss_dssp             CTTTC-CEEEECSCTTSCEECCCTTSCCBCT-------------TSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCB
T ss_pred             cCCCC-cceEEEecCCCCccceeeecCcCCC-------------CCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCC
Confidence            55554 444555554333     66777777             88988776543 3  577778 33333344333333


Q ss_pred             -eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEE
Q 010784          209 -VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWD  287 (501)
Q Consensus       209 -v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd  287 (501)
                       ...+.|+    ++|+.|+.++.++.|.+||+.+++.      ......+..      +.+ ++..|+..+.+....+|.
T Consensus        82 ~~~~~~~s----pdg~~l~~~~~~~~l~~~d~~~~~~------~~~~~~~~~------~~~-~g~~l~~~~~~~~~~~~~  144 (396)
T 3c5m_A           82 NTFGGFIS----TDERAFFYVKNELNLMKVDLETLEE------QVIYTVDEE------WKG-YGTWVANSDCTKLVGIEI  144 (396)
T ss_dssp             CTTTCEEC----TTSSEEEEEETTTEEEEEETTTCCE------EEEEECCTT------EEE-EEEEEECTTSSEEEEEEE
T ss_pred             ccccceEC----CCCCEEEEEEcCCcEEEEECCCCCc------EEEEecccc------cCC-CCCEEEeccCCccccccc
Confidence             3336786    8999999999999999999988653      223332332      444 456666666666555554


Q ss_pred             CCCCccccceecccceecCCCceeeecCCCeEEEE------eCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEE
Q 010784          288 TSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA------SGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLI  360 (501)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l  360 (501)
                      ...                    ....+.+.+.+.      ....+.+||+.+++..... .+...+..+.|+| ++..|
T Consensus       145 ~~~--------------------~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l  203 (396)
T 3c5m_A          145 LKR--------------------DWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTV  203 (396)
T ss_dssp             EGG--------------------GCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEE
T ss_pred             ccc--------------------ccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEE
Confidence            200                    000011111111      1236888898887765444 4567789999999 78766


Q ss_pred             EEEcC--C----c-EEEEecCCCCCCCCCCCcccccCc--ccCeEEEEecCC-eEEEEecCC-----CcEEEEeCCCccc
Q 010784          361 CTGGI--G----K-AMTWDIRRSQDAVKPQPMAELDGH--VGSVTQLHMDPY-KIVTGGRDD-----LRINIWETDTGML  425 (501)
Q Consensus       361 ~~~~~--d----~-i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~-~~l~~gs~d-----g~i~iwd~~~~~~  425 (501)
                      +..+.  .    . |.+||+..++.       ..+..+  ...+..++|+|+ +.|+.++.+     +.|++||+.+++.
T Consensus       204 ~~~~~~~~~~~~~~l~~~d~~~~~~-------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          204 GFCHEGPHDLVDARMWLVNEDGSNV-------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             EEEECSCSSSCSCCCEEEETTSCCC-------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             EEEecCCCCCCCceEEEEECCCCce-------eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence            65542  2    4 88889875432       222222  335788999999 544433332     4499999988765


Q ss_pred             ccccccCCCCCCCcceeeeEeec-cccEEEEeecC--------------CCceEEEeeccCCcc
Q 010784          426 ANSLLCNYPEEADISTGCSAMAV-SGCRIVTASYG--------------EPGLLQFRDFSNATC  474 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d--------------~~g~i~~w~~~~~~~  474 (501)
                      ......   .    ... +.|+| ||+++++++.+              .+..|++||+..+..
T Consensus       277 ~~l~~~---~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          277 EEVMVM---P----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             EEEEEC---C----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             EEeeeC---C----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            433211   1    122 88999 99988876421              347899999876553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.57  E-value=6.1e-13  Score=135.97  Aligned_cols=249  Identities=10%  Similarity=-0.004  Sum_probs=163.7

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC-----ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCC
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH-----SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK  223 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~  223 (501)
                      +|...+..++|||             ||++|+.+..++     +|++||  +++.+.... ....+..++|+    ++|+
T Consensus       122 ~~~~~~~~~~~SP-------------Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~~~~~~ws----pDg~  183 (710)
T 2xdw_A          122 DGTVALRGYAFSE-------------DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWT----HDGK  183 (710)
T ss_dssp             TSCEEEEEEEECT-------------TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEEC----TTSS
T ss_pred             CCCEEEEEEEECC-------------CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcccceEEEE----eCCC
Confidence            4555788999999             889988776543     899999  555443222 22236778997    8999


Q ss_pred             EEEEeeCCCc----------------EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-----CCe
Q 010784          224 ILASGGEDAT----------------VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-----DSK  282 (501)
Q Consensus       224 ~l~sg~~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-----dg~  282 (501)
                      .|+.++.++.                |++|++.++..  ...++.....|...+..+.|+| ++++|+.++.     +..
T Consensus       184 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~--~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNR  260 (710)
T ss_dssp             EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCE
T ss_pred             EEEEEEECCccccccccccccCCCCEEEEEECCCCcc--cceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccE
Confidence            9998887766                99999987652  0112223333566678899998 6667766654     567


Q ss_pred             EEEEECCC------CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC
Q 010784          283 VRVWDTST------SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS  356 (501)
Q Consensus       283 v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~  356 (501)
                      |.+||+.+      +..                                           ....+..+...+.. .|+|+
T Consensus       261 l~~~d~~~~~~~~~~~~-------------------------------------------~~~~l~~~~~~~~~-~~s~d  296 (710)
T 2xdw_A          261 LWYCDLQQESNGITGIL-------------------------------------------KWVKLIDNFEGEYD-YVTNE  296 (710)
T ss_dssp             EEEEEGGGSSSSSCSSC-------------------------------------------CCEEEECSSSSCEE-EEEEE
T ss_pred             EEEEECcccccccCCcc-------------------------------------------ceEEeeCCCCcEEE-EEecc
Confidence            88888765      210                                           01122223333333 47788


Q ss_pred             CcEEEEEcC----Cc-EEEEecCCCCCCCCCCCcccccCccc--CeEEEEecCC-eEEEEecCCCc--EEEEeCCCcccc
Q 010784          357 KSLICTGGI----GK-AMTWDIRRSQDAVKPQPMAELDGHVG--SVTQLHMDPY-KIVTGGRDDLR--INIWETDTGMLA  426 (501)
Q Consensus       357 ~~~l~~~~~----d~-i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~-~~l~~gs~dg~--i~iwd~~~~~~~  426 (501)
                      |..|+..+.    .. |.+||+.++..    .....+..|..  .+..++|+++ .++++...|+.  |.+|++.+++.+
T Consensus       297 g~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~  372 (710)
T 2xdw_A          297 GTVFTFKTNRHSPNYRLINIDFTDPEE----SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL  372 (710)
T ss_dssp             TTEEEEEECTTCTTCEEEEEETTSCCG----GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             CCEEEEEECCCCCCCEEEEEeCCCCCc----ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE
Confidence            776665542    23 99999887531    01234444433  6788999966 88888878885  566777678777


Q ss_pred             cccccCCCCCCCcceeeeEeeccccEEEEe--ecCCCceEEEeeccCCc
Q 010784          427 NSLLCNYPEEADISTGCSAMAVSGCRIVTA--SYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       427 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~--~~d~~g~i~~w~~~~~~  473 (501)
                      ..+.     .+...+..++++|+++.++..  +....+.|+.||+..+.
T Consensus       373 ~~l~-----~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          373 KIFP-----LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEC-----CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EecC-----CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            7773     335678889999999766533  22256889999987766

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.57  E-value=7.3e-13  Score=135.39  Aligned_cols=239  Identities=10%  Similarity=-0.032  Sum_probs=158.5

Q ss_pred             CceEEeeCCcEEEeecCCe-----eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          113 HDHILLDNNDIFSTQGSSI-----QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d-----~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      +..++|||||+++|.+..+     ..|++||+.++ +.......+ ..+..++|+|             ||+.|+.++.+
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg-~~~~~~~~~-~~~~~~~wsp-------------Dg~~l~~~~~~  191 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA-KELPDVLER-VKFSCMAWTH-------------DGKGMFYNAYP  191 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT-EEEEEEEEE-ECSCCEEECT-------------TSSEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC-CCCcccccC-cccceEEEEe-------------CCCEEEEEEEC
Confidence            6789999999999966543     39999999986 433322222 2367899999             88999988887


Q ss_pred             Cc----------------eEEec--CCc----eeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-----CCcEEEEecc
Q 010784          188 HS----------------IRLWW--KGS----CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-----DATVRLWSLS  240 (501)
Q Consensus       188 g~----------------i~vwd--~~~----~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-----dg~i~iwd~~  240 (501)
                      +.                |++|+  ++.    .+.....|...+..+.|+    ++|++|+.++.     +..|.+||+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S----pDg~~l~~~~~~~~~~~~~l~~~d~~  267 (710)
T 2xdw_A          192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS----DDGRYVLLSIREGCDPVNRLWYCDLQ  267 (710)
T ss_dssp             CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC----TTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred             CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc----CCCCEEEEEEEccCCCccEEEEEECc
Confidence            66                89998  333    222223355667889997    89999887765     5689999998


Q ss_pred             C------CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC---CeEEEEECCCCccccceecccceecCCCcee
Q 010784          241 S------SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD---SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD  311 (501)
Q Consensus       241 ~------~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  311 (501)
                      +      +..     ....+..+...+.. .|+++++.+++.+..+   +.|.+||+.++...                 
T Consensus       268 ~~~~~~~~~~-----~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-----------------  324 (710)
T 2xdw_A          268 QESNGITGIL-----KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-----------------  324 (710)
T ss_dssp             GSSSSSCSSC-----CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-----------------
T ss_pred             ccccccCCcc-----ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----------------
Confidence            6      321     13445555555554 4676444444444332   36888888765310                 


Q ss_pred             eecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC--CcEEEEEEcCCCcEEEEEcCCc---EEEEecCCCCCCCCCCCcc
Q 010784          312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK--PILHSFSIMPSKSLICTGGIGK---AMTWDIRRSQDAVKPQPMA  386 (501)
Q Consensus       312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~  386 (501)
                                               ....+..|.  ..+..+.|++++.++++...++   |.+||+.+++..      .
T Consensus       325 -------------------------~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~------~  373 (710)
T 2xdw_A          325 -------------------------KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL------K  373 (710)
T ss_dssp             -------------------------GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE------E
T ss_pred             -------------------------cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE------E
Confidence                                     001122222  3577889988888888888665   667787665432      5


Q ss_pred             cccCcccCeEEEEecCC--eEEEEec---CCCcEEEEeCCCcc
Q 010784          387 ELDGHVGSVTQLHMDPY--KIVTGGR---DDLRINIWETDTGM  424 (501)
Q Consensus       387 ~~~~h~~~v~~l~~~~~--~~l~~gs---~dg~i~iwd~~~~~  424 (501)
                      .+..+.+.+..+.++|+  .++++.+   ..++|.+||+.+++
T Consensus       374 ~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          374 IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            56666778889999987  4444432   45789999998877

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.56  E-value=2.3e-11  Score=110.24  Aligned_cols=273  Identities=7%  Similarity=-0.006  Sum_probs=183.0

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      ..+.+++++++|.++++...++.|.+++.. +......+..+...+.++++.+             +++++++...++.|
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-------------~g~l~v~~~~~~~v   85 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-------------LGDIWFTENGANKI   85 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-------------TSCEEEEETTTTEE
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-------------CCCEEEEecCCCeE
Confidence            358899999999988888778899999977 3222222334446788999987             78888877778889


Q ss_pred             EEec-CCceeeec--cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784          191 RLWW-KGSCQRCF--KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA  267 (501)
Q Consensus       191 ~vwd-~~~~~~~~--~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  267 (501)
                      ..+| .++. ..+  ......+.++++.    +++.++++...++.|..+|.. +..     ....+......+..+++.
T Consensus        86 ~~~d~~g~~-~~~~~~~~~~~~~~i~~~----~~g~l~v~~~~~~~i~~~~~~-g~~-----~~~~~~~~~~~~~~i~~d  154 (300)
T 2qc5_A           86 GKLSKKGGF-TEYPLPQPDSGPYGITEG----LNGDIWFTQLNGDRIGKLTAD-GTI-----YEYDLPNKGSYPAFITLG  154 (300)
T ss_dssp             EEECTTSCE-EEEECSSTTCCEEEEEEC----STTCEEEEETTTTEEEEECTT-SCE-----EEEECSSTTCCEEEEEEC
T ss_pred             EEECCCCCe-EEecCCCCCCCCccceEC----CCCCEEEEccCCCeEEEECCC-CCE-----EEccCCCCCCCceeEEEC
Confidence            9998 5333 322  2234678888885    788888877768899999987 432     112233344567889998


Q ss_pred             ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCc
Q 010784          268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPI  347 (501)
Q Consensus       268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  347 (501)
                      + +++++++...++.|..+|. +++...                                           .....+...
T Consensus       155 ~-~g~l~v~~~~~~~i~~~~~-~g~~~~-------------------------------------------~~~~~~~~~  189 (300)
T 2qc5_A          155 S-DNALWFTENQNNSIGRITN-TGKLEE-------------------------------------------YPLPTNAAA  189 (300)
T ss_dssp             T-TSSEEEEETTTTEEEEECT-TCCEEE-------------------------------------------EECSSTTCC
T ss_pred             C-CCCEEEEecCCCeEEEECC-CCcEEE-------------------------------------------eeCCCCCCC
Confidence            6 5666666666788999987 442210                                           001122356


Q ss_pred             EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784          348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML  425 (501)
Q Consensus       348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~  425 (501)
                      +..++++++|+++++...++ |.+||. +++..     ...+..+...+.+++++++ +++++...++.|..|+. +++.
T Consensus       190 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~  262 (300)
T 2qc5_A          190 PVGITSGNDGALWFVEIMGNKIGRITT-TGEIS-----EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTI  262 (300)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-----EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCE
T ss_pred             cceEEECCCCCEEEEccCCCEEEEEcC-CCcEE-----EEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcE
Confidence            78899999998888777666 999998 33321     0112234566889999998 88777666789999998 4543


Q ss_pred             ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      . .+..   ......+.+++++++|++.++..    +.|..++
T Consensus       263 ~-~~~~---~~~~~~~~~i~~~~~g~l~v~~~----~~i~~~~  297 (300)
T 2qc5_A          263 Q-EYQL---QTENAEPHGITFGKDGSVWFALK----CKIGKLN  297 (300)
T ss_dssp             E-EEEC---CSTTCCCCCEEECTTSCEEEECS----SEEEEEE
T ss_pred             E-EEEC---CccCCccceeEeCCCCCEEEEcc----CceEEeC
Confidence            3 2211   11234578899999998666542    2455554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.56  E-value=4.7e-13  Score=123.62  Aligned_cols=230  Identities=7%  Similarity=-0.023  Sum_probs=158.4

Q ss_pred             cCcEEEEeeCCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          177 TENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      ++..++..+.++.++.| .+.....+..+...+.+++|+    +++++++++..++.|.+||..++..      ......
T Consensus        16 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~g~l~~~~~~~~~i~~~d~~~~~~------~~~~~~   84 (333)
T 2dg1_A           16 KSNSAVPIISESELQTI-TAEPWLEISKKGLQLEGLNFD----RQGQLFLLDVFEGNIFKINPETKEI------KRPFVS   84 (333)
T ss_dssp             GGGCSSCCCCGGGSCEE-ECEEEEEEESSCCCEEEEEEC----TTSCEEEEETTTCEEEEECTTTCCE------EEEEEC
T ss_pred             CccceeEEeecccCccc-ccceeEEEeccCccccCcEEC----CCCCEEEEECCCCEEEEEeCCCCcE------EEEeeC
Confidence            77778877889999999 555666666777778999996    7888888888899999999987652      222224


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCC----CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKD----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL  332 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  332 (501)
                      +...+.++++++ +++++++...+    +.|.+||..++.....                                    
T Consensus        85 ~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~------------------------------------  127 (333)
T 2dg1_A           85 HKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDI------------------------------------  127 (333)
T ss_dssp             SSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEE------------------------------------
T ss_pred             CCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEE------------------------------------
Confidence            567899999997 67777776666    6899999877642100                                    


Q ss_pred             CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e
Q 010784          333 RTMQKVMTPAICKPILHSFSIMPSKSLICTGGI------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K  404 (501)
Q Consensus       333 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~  404 (501)
                            .....+...+..++++|+|+++++...      .+ |..+|...++.       ..+..+...+..++|+|+ +
T Consensus       128 ------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          128 ------IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-------TPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             ------ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-------EEEEEEESSEEEEEECTTSS
T ss_pred             ------EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE-------EEeecCCCcccceEECCCCC
Confidence                  000012456889999999998887764      23 77777654332       222223445789999999 5


Q ss_pred             -EEEEecCCCcEEEEeCCC-cccccccc---cCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          405 -IVTGGRDDLRINIWETDT-GMLANSLL---CNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       405 -~l~~gs~dg~i~iwd~~~-~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                       ++++.+.++.|.+||+.+ +..+..+.   .....+ ...+..++++++|+++++..  .++.|.+|+..
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~--~~~~v~~~d~~  262 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMY--GQGRVLVFNKR  262 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEE--TTTEEEEECTT
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEc--CCCEEEEECCC
Confidence             666666788999999964 43332210   000011 13567899999999888776  55899999874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.55  E-value=4.2e-12  Score=115.07  Aligned_cols=240  Identities=7%  Similarity=-0.041  Sum_probs=165.3

Q ss_pred             EEEecCCCCceEEeeCCcE-EEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          105 CFYSVAKPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      .+.........++|++++. +++++..++.|..|+..++   ...+..+...+.++++++             +|+++++
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~-------------dg~l~v~   85 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNK-------------QGHLIAC   85 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECT-------------TCCEEEE
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECC-------------CCcEEEE
Confidence            3334445578999999997 7788888999999999864   556667778899999998             7888888


Q ss_pred             eeCCCceEEec--CCceeeeccC----CCCceEEEEeeecCCCCCCEEEE----eeC-------------CCcEEEEecc
Q 010784          184 SSCDHSIRLWW--KGSCQRCFKG----HNGPVSTLSDKLLGDGSGKILAS----GGE-------------DATVRLWSLS  240 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~~~~~~~~----h~~~v~~l~~s~~~~~~~~~l~s----g~~-------------dg~i~iwd~~  240 (501)
                      ...++.|.+||  +++.......    ....+..+++.    ++|+++++    |..             .+.|..++..
T Consensus        86 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d----~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~  161 (296)
T 3e5z_A           86 SHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA----PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD  161 (296)
T ss_dssp             ETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC----TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred             ecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC----CCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence            77788999999  4443322221    12345678885    88998887    331             2344444443


Q ss_pred             CCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECC-CCccccceecccceecCCCceeeecCCC-e
Q 010784          241 SSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS-TSSAVRSSCCVGMTSVPGVPVDMKCHES-M  318 (501)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  318 (501)
                       +.       ...+..+......++|+| +++.+++.+.++.|.+||+. +++........  ....+.+..+.++++ .
T Consensus       162 -g~-------~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          162 -GT-------LSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             -SC-------EEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSC
T ss_pred             -CC-------EEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCC
Confidence             22       334445666778999998 66666888888999999987 44320111111  112334455555543 3


Q ss_pred             EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEE-cCCCcEEEEEcCCcEEEEecCCCC
Q 010784          319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSI-MPSKSLICTGGIGKAMTWDIRRSQ  377 (501)
Q Consensus       319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~-~~~~~~l~~~~~d~i~iwd~~~~~  377 (501)
                      ++++.++.|.+||.. ++.+..+..+.. +.+++| .|+++.|++++.+++..++..+.+
T Consensus       231 l~v~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~  288 (296)
T 3e5z_A          231 IWASAGDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRG  288 (296)
T ss_dssp             EEEEETTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCB
T ss_pred             EEEEcCCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEccccc
Confidence            566667799999986 777777777766 899999 589988888888877777777643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.55  E-value=1e-11  Score=121.66  Aligned_cols=296  Identities=10%  Similarity=0.036  Sum_probs=192.1

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecc--cccccceecccCCcceeEEEee----ccCcCcccccCCCCcCcEEEEe
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFL--SESYYRATLSDHKARITCMRLF----PLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~--~~~~~~~~~~~h~~~V~~~~~~----~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      ..+..+.++|||+++.+++.++.|.+||+.  ++ +.+..+.... ....++|+    |             +|++++++
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G~-~P~~ia~s~~~~p-------------DGk~l~v~  261 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIGS-EARSIETSKMEGW-------------EDKYAIAG  261 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECCS-EEEEEEECCSTTC-------------TTTEEEEE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecCC-CCceeEEccccCC-------------CCCEEEEE
Confidence            346789999999999988899999999995  53 5666665433 35789999    6             78877766


Q ss_pred             eC-CCceEEec--CCceeeeccC----------C-CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccc
Q 010784          185 SC-DHSIRLWW--KGSCQRCFKG----------H-NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQAL  250 (501)
Q Consensus       185 ~~-dg~i~vwd--~~~~~~~~~~----------h-~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  250 (501)
                      +. +++|.|+|  +.+.+..+..          | ...+..+.+++   ....++++...+|.|.++|......    ..
T Consensus       262 n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~---~~~~~vv~~~~~g~v~~vd~~~~~~----~~  334 (567)
T 1qks_A          262 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH---YRPEFIVNVKETGKILLVDYTDLNN----LK  334 (567)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS---SSSEEEEEETTTTEEEEEETTCSSE----EE
T ss_pred             EccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC---CCCEEEEEecCCCeEEEEecCCCcc----ce
Confidence            65 59999999  5666655432          1 12567777761   2345666667789999999876542    01


Q ss_pred             eeeccCCCCceeEEEEeecCCeEEEE-EeCCCeEEEEECCCCccccceecccceecCCCceee-ecCCCeEEEEe--C-C
Q 010784          251 KATLYGHEKPIKLMSVAGHKSFLLVT-ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM-KCHESMLYIAS--G-S  325 (501)
Q Consensus       251 ~~~~~~~~~~v~~l~~~~~~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~-~  325 (501)
                      +..+ ........+.|+| +++++++ ...++.|.++|+.+++.+.....-....+.+.-..+ ......++++.  + +
T Consensus       335 v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~  412 (567)
T 1qks_A          335 TTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD  412 (567)
T ss_dssp             EEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred             eeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCC
Confidence            2222 2334566788998 5666554 456889999999998765443220222222222222 22223344443  3 5


Q ss_pred             cEEEEEcCC-------CceEeeeccCCCcEEEEEEcCCCcEEEEEcC-------C-cEEEEecCCCCCCCCCCCccc---
Q 010784          326 SVVTIDLRT-------MQKVMTPAICKPILHSFSIMPSKSLICTGGI-------G-KAMTWDIRRSQDAVKPQPMAE---  387 (501)
Q Consensus       326 ~i~~~d~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-------d-~i~iwd~~~~~~~~~~~~~~~---  387 (501)
                      .|.++|..+       .+.+.++......-..+..+|+++++.+...       . .|.++|+.+.+.-.....+..   
T Consensus       413 ~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~  492 (567)
T 1qks_A          413 SVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI  492 (567)
T ss_dssp             EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECH
T ss_pred             eEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecc
Confidence            899999987       5667777765444355778999998888662       2 499999987621000001111   


Q ss_pred             -----ccCcccCeEEEEecCC--eEEEEec----CCCcEEEEeCCCcccccccc
Q 010784          388 -----LDGHVGSVTQLHMDPY--KIVTGGR----DDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       388 -----~~~h~~~v~~l~~~~~--~~l~~gs----~dg~i~iwd~~~~~~~~~~~  430 (501)
                           +..-...+..+.|+|+  .++++.-    .++.|.|+|..+++++.++.
T Consensus       493 ~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          493 AEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             HHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             ccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence                 1112346889999998  6666532    37999999999999888884

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=3e-12  Score=117.61  Aligned_cols=287  Identities=8%  Similarity=-0.070  Sum_probs=184.7

Q ss_pred             eeCCcEEEeecCC-----eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee-------
Q 010784          118 LDNNDIFSTQGSS-----IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS-------  185 (501)
Q Consensus       118 ~~~~~~~~~~g~~-----d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-------  185 (501)
                      ..|++..+.....     ++.|.+.|..++ +.+.++..-..+ . ++++|             +|++++.++       
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~-~v~~~I~vG~~P-~-va~sp-------------DG~~lyVan~~~~r~~  103 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAG-RVIGMIDGGFLP-N-PVVAD-------------DGSFIAHASTVFSRIA  103 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTT-EEEEEEEECSSC-E-EEECT-------------TSSCEEEEEEEEEETT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCC-eEEEEEECCCCC-c-EEECC-------------CCCEEEEEcccccccc
Confidence            3566655544332     689999999985 777777654555 4 99999             788877765       


Q ss_pred             ---CCCceEEec--CCceeeeccCC-------CCceEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccce
Q 010784          186 ---CDHSIRLWW--KGSCQRCFKGH-------NGPVSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALK  251 (501)
Q Consensus       186 ---~dg~i~vwd--~~~~~~~~~~h-------~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~  251 (501)
                         .++.|.+||  +.+.+..+...       ...-..+.|+    ++|++++.+..  ++.|.++|+.+++      .+
T Consensus       104 ~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s----pDGk~lyVan~~~~~~VsVID~~t~~------vv  173 (386)
T 3sjl_D          104 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT----PDGKTLLFYQFSPAPAVGVVDLEGKA------FK  173 (386)
T ss_dssp             EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC----TTSSEEEEEECSSSCEEEEEETTTTE------EE
T ss_pred             cCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc----CCCCEEEEEEcCCCCeEEEEECCCCc------EE
Confidence               367899999  66666665321       1234567886    89999888864  6899999999976      35


Q ss_pred             eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC-CccccceecccceecCCCcee--eec---CCCeEEEEeCC
Q 010784          252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVD--MKC---HESMLYIASGS  325 (501)
Q Consensus       252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~  325 (501)
                      .++... +   +..+.|.+...+++.+.||.+.+.++.+ ++.... . ...+........  ..+   .+...+++.++
T Consensus       174 ~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~-~-~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g  247 (386)
T 3sjl_D          174 RMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT-H-TEVFHPEDEFLINHPAYSQKAGRLVWPTYTG  247 (386)
T ss_dssp             EEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE-E-CCCCSCTTSCBCSCCEEETTTTEEEEEBTTS
T ss_pred             EEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEe-e-cceeccccccccccceeEcCCCcEEEEeCCC
Confidence            555321 1   1223344566778889999999999987 443211 1 111111111111  122   22334555667


Q ss_pred             cEEEEEcCCCce--Eeeec---------c-CCCcEEEEEEcCCCcEEEEEcC----------Cc-EEEEecCCCCCCCCC
Q 010784          326 SVVTIDLRTMQK--VMTPA---------I-CKPILHSFSIMPSKSLICTGGI----------GK-AMTWDIRRSQDAVKP  382 (501)
Q Consensus       326 ~i~~~d~~~~~~--~~~~~---------~-~~~~v~~v~~~~~~~~l~~~~~----------d~-i~iwd~~~~~~~~~~  382 (501)
                      .++++|+.+...  +..+.         + ..+....++++++++.++....          ++ |.++|+.+.+.+   
T Consensus       248 ~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~---  324 (386)
T 3sjl_D          248 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL---  324 (386)
T ss_dssp             EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---
T ss_pred             EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE---
Confidence            999999976542  22221         0 1122334777898877776542          24 999999997654   


Q ss_pred             CCcccccCcccCeEEEEecCC-e--EEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecc
Q 010784          383 QPMAELDGHVGSVTQLHMDPY-K--IVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS  449 (501)
Q Consensus       383 ~~~~~~~~h~~~v~~l~~~~~-~--~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  449 (501)
                         ..+.. ...+.+|+++++ +  ++++...++.|.++|..+++.+.++..      ...-+.|.+++|
T Consensus       325 ---~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~------~~~p~~l~~s~d  384 (386)
T 3sjl_D          325 ---AKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ------LGHGPQVITTAD  384 (386)
T ss_dssp             ---EEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC------CCSSCCEEEECC
T ss_pred             ---EEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC------CCCCceeEECCc
Confidence               55543 346889999999 4  455555689999999999999999853      233455667666

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.52  E-value=3.8e-12  Score=113.52  Aligned_cols=220  Identities=8%  Similarity=-0.052  Sum_probs=157.1

Q ss_pred             cCcEEEEeeCCCceEEec--CCceeeeccCCC-CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784          177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHN-GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      .+++|++++.|+.|.+||  +++.+..+..+. ..+.++.++    ++|+++++  .++.|..||. +++      .+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~----pdG~ilvs--~~~~V~~~d~-~G~------~~W~   70 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAAT----KAGEILFS--YSKGAKMITR-DGR------ELWN   70 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEEC----TTSCEEEE--CBSEEEEECT-TSC------EEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEEC----CCCCEEEe--CCCCEEEECC-CCC------EEEE
Confidence            478999999999999999  888888887765 468888886    88998883  4778999999 565      3555


Q ss_pred             ccCC-CCceeEEEEeecCCeEEEEEeC-CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784          254 LYGH-EKPIKLMSVAGHKSFLLVTISK-DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID  331 (501)
Q Consensus       254 ~~~~-~~~v~~l~~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  331 (501)
                      +..+ ...+.++.+.+ +++++++.+. ++.|..+|. +++.+....                                 
T Consensus        71 ~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~---------------------------------  115 (276)
T 3no2_A           71 IAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTE---------------------------------  115 (276)
T ss_dssp             EECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEE---------------------------------
T ss_pred             EcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEe---------------------------------
Confidence            5544 34677888887 7888888877 778887775 454322211                                 


Q ss_pred             cCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEe
Q 010784          332 LRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGG  409 (501)
Q Consensus       332 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~g  409 (501)
                      +...     ...+......+++.++|+++++...++ |.+||.. ++.+      .++... ..+.++...++ .+++++
T Consensus       116 ~~~~-----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~------w~~~~~-~~~~~~~~~~~g~~~v~~  182 (276)
T 3no2_A          116 FETG-----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL------NSVKLS-GTPFSSAFLDNGDCLVAC  182 (276)
T ss_dssp             ECCS-----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE------EEEECS-SCCCEEEECTTSCEEEEC
T ss_pred             ccCC-----CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE------EEEECC-CCccceeEcCCCCEEEEe
Confidence            1000     001111233456789999999999888 9999988 7654      555543 34566777887 888887


Q ss_pred             cCCCcEEEEeCCCcccccccccCCCC-CCCcceeeeEeeccccEEEEee
Q 010784          410 RDDLRINIWETDTGMLANSLLCNYPE-EADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       410 s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      +.+++|..+|..+|+.+.++...... .....+..+...++|..+++..
T Consensus       183 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          183 GDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             BTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            78889999999999998888532111 1223467888889999888874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.51  E-value=1.5e-12  Score=132.68  Aligned_cols=237  Identities=11%  Similarity=-0.084  Sum_probs=154.2

Q ss_pred             CCceEEeeCCcEEEe-----ecCCeeeEEEEecccccccceecccCCcce--eEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          112 PHDHILLDNNDIFST-----QGSSIQNIKIDNFLSESYYRATLSDHKARI--TCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~-----~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V--~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      .+..++|||||+++|     .|+.+..|++||+.++ +.+.  ..+...+  ..++|+|             ||+.|+.+
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg-~~~~--~~~~~~~~~~~~~wsp-------------Dg~~l~~~  185 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG-EWSK--VDVIEGGKYATPKWTP-------------DSKGFYYE  185 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC-CBCS--SCCBSCCTTCCCEECT-------------TSSEEEEE
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC-CCcC--CcccCcccccceEEec-------------CCCEEEEE
Confidence            478899999999999     7777899999999986 3321  1122223  6789999             88999999


Q ss_pred             eCCCc-------------eEEec--CCc----eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC----cEEEEeccC
Q 010784          185 SCDHS-------------IRLWW--KGS----CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA----TVRLWSLSS  241 (501)
Q Consensus       185 ~~dg~-------------i~vwd--~~~----~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg----~i~iwd~~~  241 (501)
                      +.|..             |++|+  ++.    .+.....|...+..+.|+    ++|++|+.++.++    .|.+|+..+
T Consensus       186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S----pDG~~l~~~~~~~~~~~~l~~~~~~~  261 (695)
T 2bkl_A          186 WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS----RDGKYLFVYILRGWSENDVYWKRPGE  261 (695)
T ss_dssp             ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC----TTSCCEEEEEEETTTEEEEEEECTTC
T ss_pred             EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC----CCCCEEEEEEeCCCCceEEEEEcCCC
Confidence            88776             99998  333    333344566678899997    8999988877666    666665544


Q ss_pred             CCccccccceeeccCCCCceeEEEEeecCCeEEEEEe---CCCeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784          242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS---KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM  318 (501)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (501)
                      +.       ...+..+...+....+ + ++.+++.+.   .++.|.+||+.+++....                      
T Consensus       262 ~~-------~~~l~~~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~----------------------  310 (695)
T 2bkl_A          262 KD-------FRLLVKGVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASW----------------------  310 (695)
T ss_dssp             SS-------CEEEEECSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGC----------------------
T ss_pred             Cc-------eEEeecCCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCC----------------------
Confidence            33       3344445555555555 4 444444443   257899999876532000                      


Q ss_pred             EEEEeCCcEEEEEcCCCceEeeeccC-CCcEEEEEEcCCCcEEEEEcCCc-EEEEecC-CCCCCCCCCCcccccCc-ccC
Q 010784          319 LYIASGSSVVTIDLRTMQKVMTPAIC-KPILHSFSIMPSKSLICTGGIGK-AMTWDIR-RSQDAVKPQPMAELDGH-VGS  394 (501)
Q Consensus       319 ~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~h-~~~  394 (501)
                                         ...+..+ ...+..++++ ++.++++...++ .++|.+. .++.      ...+..+ .+.
T Consensus       311 -------------------~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~------~~~l~~~~~~~  364 (695)
T 2bkl_A          311 -------------------KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP------VRTVQLPGVGA  364 (695)
T ss_dssp             -------------------EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE------EEECCCSSSSE
T ss_pred             -------------------eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe------eEEecCCCCeE
Confidence                               0111112 3457778887 777888888777 6766554 2222      2344443 566


Q ss_pred             eEEEEecCC--eEEEEe---cCCCcEEEEeCCCccc
Q 010784          395 VTQLHMDPY--KIVTGG---RDDLRINIWETDTGML  425 (501)
Q Consensus       395 v~~l~~~~~--~~l~~g---s~dg~i~iwd~~~~~~  425 (501)
                      +..+.++|+  .++++.   ...++|++||+.+++.
T Consensus       365 v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          365 ASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            778888887  444333   2357899999988763

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.51  E-value=2.1e-12  Score=120.01  Aligned_cols=222  Identities=9%  Similarity=0.010  Sum_probs=143.9

Q ss_pred             CCCceEEeeCCcEEEeecCCe-----eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          111 KPHDHILLDNNDIFSTQGSSI-----QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d-----~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      ..+..++|+|||.+++..+.+     ..+.+|++.++ +..... .+.. +..++|+|             +|+.|+.++
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g-~~~~l~-~~~~-~~~~~wsp-------------dg~~l~~~~  122 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL-SSKKIL-EAKN-IRSLEWNE-------------DSRKLLIVG  122 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT-EEEEEE-EESE-EEEEEECT-------------TSSEEEEEE
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC-ceEEEE-cCCC-ccceeECC-------------CCCEEEEEE
Confidence            457889999999999877653     34777787764 433333 3334 99999999             788888776


Q ss_pred             CC---------------------------CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC----
Q 010784          186 CD---------------------------HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA----  232 (501)
Q Consensus       186 ~d---------------------------g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg----  232 (501)
                      .+                           ..|.+||  .++.+..+.. . .+..+.|+    ++| +++++..++    
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s----pdg-~~~~~~~~~~~~~  195 (347)
T 2gop_A          123 FKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH----RDK-IVVNVPHREIIPQ  195 (347)
T ss_dssp             ECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE----TTE-EEEEEECCCSSCC
T ss_pred             ccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC----CCe-EEEEEeccccccc
Confidence            42                           5688888  4444245544 3 78889997    788 888776542    


Q ss_pred             ---cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC--------eEEEEECCCCccccceeccc
Q 010784          233 ---TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS--------KVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       233 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg--------~v~vwd~~~~~~~~~~~~~~  301 (501)
                         ...+|.++++.       ...+..+ ..+..+  +| +++.|+.++.++        .|.+||  +++         
T Consensus       196 ~~~~~~l~~~d~~~-------~~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~---------  253 (347)
T 2gop_A          196 YFKFWDIYIWEDGK-------EEKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD--GKE---------  253 (347)
T ss_dssp             SSCCEEEEEEETTE-------EEEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--SSC---------
T ss_pred             ccccccEEEeCCCc-------eEEeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--CCc---------
Confidence               45666555322       2233333 444443  77 666676666442        455555  221         


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEE-EEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHS-FSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~-v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                                                         .......+...+.. +.|+ ++ ++++++.++ +++| +.+++. 
T Consensus       254 -----------------------------------~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-  294 (347)
T 2gop_A          254 -----------------------------------VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-  294 (347)
T ss_dssp             -----------------------------------EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-
T ss_pred             -----------------------------------eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-
Confidence                                               11222344566776 8999 88 888888777 9999 874321 


Q ss_pred             CCCCCcccccCcccCeEEEEecCCeEEEEecCCCcE-EEEeCCCcc
Q 010784          380 VKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRI-NIWETDTGM  424 (501)
Q Consensus       380 ~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i-~iwd~~~~~  424 (501)
                            ..+..+...|.+++|+| .++++++.++.. .+|.+. ++
T Consensus       295 ------~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          295 ------KPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             ------EEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEEES-SS
T ss_pred             ------EEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC-Cc
Confidence                  33334467899999999 888777777665 777776 44

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=1.3e-11  Score=112.89  Aligned_cols=243  Identities=7%  Similarity=0.017  Sum_probs=154.6

Q ss_pred             CCcceeEEEeeccCcCcccccCCCCcCcEEEE-------eeCCCceEEec-CCceeeeccC-----CCCceEEEEeeecC
Q 010784          152 HKARITCMRLFPLHETSLFRSEPQRTENVLVT-------SSCDHSIRLWW-KGSCQRCFKG-----HNGPVSTLSDKLLG  218 (501)
Q Consensus       152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s-------~~~dg~i~vwd-~~~~~~~~~~-----h~~~v~~l~~s~~~  218 (501)
                      .-....+++|.+             +++++++       +..++.|.+|| .......+..     +...+.++++.   
T Consensus        16 ~~~~~~~~~~~~-------------~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~---   79 (314)
T 1pjx_A           16 DIPGAEGPVFDK-------------NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD---   79 (314)
T ss_dssp             CCTTCEEEEECT-------------TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC---
T ss_pred             cCCCccCceECC-------------CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe---
Confidence            334567889987             7888888       67789999998 3323333322     45678899985   


Q ss_pred             CCC-CCEEEEeeCCCcEEEEeccCCCccccccceee-cc---C-CCCceeEEEEeecCCeEEEEEeCC------------
Q 010784          219 DGS-GKILASGGEDATVRLWSLSSSGKRGQQALKAT-LY---G-HEKPIKLMSVAGHKSFLLVTISKD------------  280 (501)
Q Consensus       219 ~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~---~-~~~~v~~l~~~~~~~~~l~s~s~d------------  280 (501)
                       ++ ++++++. ..+.|.+||.. +..      ... ..   . ....+.++++.+ +++++++...+            
T Consensus        80 -~~~g~l~v~~-~~~~l~~~d~~-g~~------~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           80 -RDANQLFVAD-MRLGLLVVQTD-GTF------EEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             -SSSSEEEEEE-TTTEEEEEETT-SCE------EECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTS
T ss_pred             -cCCCcEEEEE-CCCCEEEEeCC-CCE------EEEEeccCCCccccCCcCEEECC-CCCEEEEecCccccccccccccc
Confidence             66 6555544 44478899987 542      111 11   1 123578899987 66666666544            


Q ss_pred             ---CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEc---
Q 010784          281 ---SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIM---  354 (501)
Q Consensus       281 ---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~---  354 (501)
                         +.|..+|.. ++                                            .. .+..+......++++   
T Consensus       150 ~~~~~l~~~~~~-g~--------------------------------------------~~-~~~~~~~~~~~i~~~~~~  183 (314)
T 1pjx_A          150 EKFGSIYCFTTD-GQ--------------------------------------------MI-QVDTAFQFPNGIAVRHMN  183 (314)
T ss_dssp             SSCEEEEEECTT-SC--------------------------------------------EE-EEEEEESSEEEEEEEECT
T ss_pred             CCCCeEEEECCC-CC--------------------------------------------EE-EeccCCCCcceEEEeccc
Confidence               344444433 21                                            11 111122345788899   


Q ss_pred             -CCCcEEEEE-cCCc-EEEEecC-CCCCCCCCCCcccccCcc-cCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccc
Q 010784          355 -PSKSLICTG-GIGK-AMTWDIR-RSQDAVKPQPMAELDGHV-GSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANS  428 (501)
Q Consensus       355 -~~~~~l~~~-~~d~-i~iwd~~-~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~  428 (501)
                       |+++.++.+ ..++ |.+||.. .++.. .......+..+. ..+..++++++ .++++...++.|.+||..+++.+..
T Consensus       184 d~dg~~l~v~~~~~~~i~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~  262 (314)
T 1pjx_A          184 DGRPYQLIVAETPTKKLWSYDIKGPAKIE-NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR  262 (314)
T ss_dssp             TSCEEEEEEEETTTTEEEEEEEEETTEEE-EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE
T ss_pred             CCCCCEEEEEECCCCeEEEEECCCCCccc-cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEE
Confidence             998655444 4555 9999986 33210 001123334443 56788999998 8888766788999999987877766


Q ss_pred             cccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          429 LLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       429 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      +.     .+...+.+++|+++|+.|+.++. .++.|..|++...+
T Consensus       263 ~~-----~~~~~~~~i~~~~dg~~l~v~~~-~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          263 IR-----CPFEKPSNLHFKPQTKTIFVTEH-ENNAVWKFEWQRNG  301 (314)
T ss_dssp             EE-----CSSSCEEEEEECTTSSEEEEEET-TTTEEEEEECSSCB
T ss_pred             Ee-----CCCCCceeEEECCCCCEEEEEeC-CCCeEEEEeCCCCC
Confidence            63     23467889999999996665543 45789999987644

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.49  E-value=2e-11  Score=111.52  Aligned_cols=240  Identities=10%  Similarity=0.042  Sum_probs=157.0

Q ss_pred             cCCCCceEEeeCCcEEEee-------cCCeeeEEEEecccccccceecc----cCCcceeEEEeeccCcCcccccCCCCc
Q 010784          109 VAKPHDHILLDNNDIFSTQ-------GSSIQNIKIDNFLSESYYRATLS----DHKARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~-------g~~d~~i~vw~~~~~~~~~~~~~----~h~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      .-..+.++++++++.++++       +..++.|.+|+..++ +......    ++...+.++++++             +
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~~~-------------~   81 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG-KKTVICKPEVNGYGGIPAGCQCDR-------------D   81 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC-CEEEEECCEETTEECCEEEEEECS-------------S
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC-cEEEEEecccCCCCCCCceEEEec-------------C
Confidence            3345789999999988888       677889999998764 3322111    2556789999988             6


Q ss_pred             -CcEEEEeeCCCceEEec-CCceeeec-cC-----CCCceEEEEeeecCCCCCCEEEEeeCC---------------CcE
Q 010784          178 -ENVLVTSSCDHSIRLWW-KGSCQRCF-KG-----HNGPVSTLSDKLLGDGSGKILASGGED---------------ATV  234 (501)
Q Consensus       178 -~~~l~s~~~dg~i~vwd-~~~~~~~~-~~-----h~~~v~~l~~s~~~~~~~~~l~sg~~d---------------g~i  234 (501)
                       ++++++.. .+.|.+|| .++ ...+ ..     ....+.++++.    ++|+++++...+               +.|
T Consensus        82 ~g~l~v~~~-~~~l~~~d~~g~-~~~~~~~~~~~~~~~~~~~i~~d----~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l  155 (314)
T 1pjx_A           82 ANQLFVADM-RLGLLVVQTDGT-FEEIAKKDSEGRRMQGCNDCAFD----YEGNLWITAPAGEVAPADYTRSMQEKFGSI  155 (314)
T ss_dssp             SSEEEEEET-TTEEEEEETTSC-EEECCSBCTTSCBCBCCCEEEEC----TTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred             CCcEEEEEC-CCCEEEEeCCCC-EEEEEeccCCCccccCCcCEEEC----CCCCEEEEecCcccccccccccccCCCCeE
Confidence             66566554 44688898 533 3332 11     12357889985    788887776654               456


Q ss_pred             EEEeccCCCccccccceeeccCCCCceeEEEEe----ecCCe-EEEEEeCCCeEEEEECC-CCccccceecccceecCCC
Q 010784          235 RLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA----GHKSF-LLVTISKDSKVRVWDTS-TSSAVRSSCCVGMTSVPGV  308 (501)
Q Consensus       235 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~-~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~  308 (501)
                      ..++.. +.       ...+..+......++++    + +++ ++++...++.|.+||.. +++...             
T Consensus       156 ~~~~~~-g~-------~~~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~-------------  213 (314)
T 1pjx_A          156 YCFTTD-GQ-------MIQVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIEN-------------  213 (314)
T ss_dssp             EEECTT-SC-------EEEEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEE-------------
T ss_pred             EEECCC-CC-------EEEeccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCcccc-------------
Confidence            666654 32       12222233345788888    7 554 44555667899999875 221100             


Q ss_pred             ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC-CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcc
Q 010784          309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK-PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMA  386 (501)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~  386 (501)
                                                .+....+..+. ..+..++++++|+++++...++ |.+||..+++..      .
T Consensus       214 --------------------------~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~------~  261 (314)
T 1pjx_A          214 --------------------------KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK------M  261 (314)
T ss_dssp             --------------------------EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS------E
T ss_pred             --------------------------ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe------E
Confidence                                      00111222233 5577899999999888876555 999998865543      4


Q ss_pred             cccCcccCeEEEEecCC-e-EEEEecCCCcEEEEeCCC
Q 010784          387 ELDGHVGSVTQLHMDPY-K-IVTGGRDDLRINIWETDT  422 (501)
Q Consensus       387 ~~~~h~~~v~~l~~~~~-~-~l~~gs~dg~i~iwd~~~  422 (501)
                      .+..+...+.+++++|+ + ++++...++.|..|++..
T Consensus       262 ~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          262 RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            45555678999999998 5 777776778999999864

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.46  E-value=3e-12  Score=131.45  Aligned_cols=250  Identities=13%  Similarity=0.010  Sum_probs=152.3

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC-----CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCC
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-----HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK  223 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~  223 (501)
                      +|...+..++|||             ||++|+.++.+     .+|++||  +++.+.. ..+...+..++|+    ++ +
T Consensus       160 ~~~~~~~~~~~SP-------------DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~ws----pD-~  220 (741)
T 1yr2_A          160 DGATALDAWAASD-------------DGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWL----GN-D  220 (741)
T ss_dssp             ---EEEEEEEECT-------------TSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEES----TT-S
T ss_pred             CCCEEEEeEEECC-------------CCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEE----CC-C
Confidence            3445788999999             88988877654     4699999  4444332 2122223577887    78 8


Q ss_pred             EEEEeeCCCc--------------EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC-----eEE
Q 010784          224 ILASGGEDAT--------------VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS-----KVR  284 (501)
Q Consensus       224 ~l~sg~~dg~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg-----~v~  284 (501)
                      .|+.++.++.              |++|++.++..  ...++.....+...+..+.|+| ++++|+..+.++     .|+
T Consensus       221 ~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~--~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~  297 (741)
T 1yr2_A          221 ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS--ADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVH  297 (741)
T ss_dssp             EEEEEECCCC--------CCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEE
T ss_pred             EEEEEEecCcccccccccCCCCCEEEEEECCCCch--hCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEE
Confidence            8887776554              88999876542  0112223333444578899998 677777666443     677


Q ss_pred             EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784          285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG  364 (501)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  364 (501)
                      +||+.++..                                          +....+..+...+... ++|+|..|+..+
T Consensus       298 ~~d~~~~~~------------------------------------------~~~~~l~~~~~~~~~~-~~~dg~~l~~~s  334 (741)
T 1yr2_A          298 VARVTNGKI------------------------------------------GPVTALIPDLKAQWDF-VDGVGDQLWFVS  334 (741)
T ss_dssp             EEEEETTEE------------------------------------------CCCEEEECSSSSCEEE-EEEETTEEEEEE
T ss_pred             EEECCCCCC------------------------------------------cccEEecCCCCceEEE-EeccCCEEEEEE
Confidence            777765410                                          0011122223333333 247777776665


Q ss_pred             C----Cc-EEEEecCCCC-CCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCC-CcccccccccCCCCCC
Q 010784          365 I----GK-AMTWDIRRSQ-DAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETD-TGMLANSLLCNYPEEA  437 (501)
Q Consensus       365 ~----d~-i~iwd~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~  437 (501)
                      +    +. |.+||+.++. ..     ...+..+...+..+.++.+.++++...|+..+||.+. +++....+..    ..
T Consensus       335 ~~~~~~~~l~~~d~~~~~~~~-----~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~----~~  405 (741)
T 1yr2_A          335 GDGAPLKKIVRVDLSGSTPRF-----DTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSL----PG  405 (741)
T ss_dssp             CTTCTTCEEEEEECSSSSCEE-----EEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBC----SS
T ss_pred             CCCCCCCEEEEEeCCCCcccc-----EEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccC----CC
Confidence            3    33 9999987742 11     1223344455777888855888888889988777654 4555555531    12


Q ss_pred             CcceeeeEeeccccEEEEe--ecCCCceEEEeeccCCcc
Q 010784          438 DISTGCSAMAVSGCRIVTA--SYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       438 ~~~v~~~~~s~~g~~l~s~--~~d~~g~i~~w~~~~~~~  474 (501)
                      ...+..+.++|+++.|+..  +....+.|+.||+..+..
T Consensus       406 ~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          406 IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4568889999998866532  222457899999876553

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.46  E-value=1.4e-10  Score=107.95  Aligned_cols=257  Identities=7%  Similarity=-0.089  Sum_probs=164.6

Q ss_pred             eEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee----------CCCceEEec--CCceee
Q 010784          133 NIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS----------CDHSIRLWW--KGSCQR  200 (501)
Q Consensus       133 ~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd--~~~~~~  200 (501)
                      .|.++|..++ +.+.++..-..+  .++++|             ||++++.+.          .++.|.+||  +.+.+.
T Consensus        48 ~v~v~D~~t~-~~~~~i~~g~~p--~i~~sp-------------Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~  111 (373)
T 2mad_H           48 QQWVLDAGSG-SILGHVNGGFLP--NPVAAH-------------SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA  111 (373)
T ss_pred             EEEEEECCCC-eEEEEecCCCCC--CeEECC-------------CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE
Confidence            8899999885 666666544444  889998             888888875          367899999  455555


Q ss_pred             eccCC-------CCceEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceee-ccCCCCceeEEEEeecC
Q 010784          201 CFKGH-------NGPVSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKAT-LYGHEKPIKLMSVAGHK  270 (501)
Q Consensus       201 ~~~~h-------~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~  270 (501)
                      .+...       ...-..+.|+    ++|++|+.+..  ++.|.++| .+++      .+.. +.. ..   ++.+.+..
T Consensus       112 ~i~~~~~~~~~~g~~p~~~~~s----pDG~~l~v~n~~~~~~v~viD-~t~~------~~~~~i~~-~~---~~~~~~~~  176 (373)
T 2mad_H          112 DIELPDAPRFDVGPYSWMNANT----PNNADLLFFQFAAGPAVGLVV-QGGS------SDDQLLSS-PT---CYHIHPGA  176 (373)
T ss_pred             EEECCCccccccCCCccceEEC----CCCCEEEEEecCCCCeEEEEE-CCCC------EEeEEcCC-Cc---eEEEEeCC
Confidence            44321       1233477886    89999998874  47899999 8775      3444 332 22   24455555


Q ss_pred             CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee----eecCCCe-EEEEeCCcEEEEEcCCCce--Eeeecc
Q 010784          271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD----MKCHESM-LYIASGSSVVTIDLRTMQK--VMTPAI  343 (501)
Q Consensus       271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~i~~~d~~~~~~--~~~~~~  343 (501)
                      ...+++.+.||.+.++|. +++........... ....+..    ....... .++...+.+.+.|+.....  +..+..
T Consensus       177 ~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~  254 (373)
T 2mad_H          177 PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeee
Confidence            667788889999999999 77654221100000 1111111    1112233 3344455888888865432  222211


Q ss_pred             ----------CCCcEEEEEEcCCCcEEEEEcC----------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784          344 ----------CKPILHSFSIMPSKSLICTGGI----------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP  402 (501)
Q Consensus       344 ----------~~~~v~~v~~~~~~~~l~~~~~----------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  402 (501)
                                .......+.++|+++.++++..          ++ |.++|..+.+.+      .++.. ......++|+|
T Consensus       255 ~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv------~~i~~-g~~p~~i~~s~  327 (373)
T 2mad_H          255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS------SQISL-GHDVDAISVAQ  327 (373)
T ss_pred             cCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE------EEEEC-CCCcCeEEECC
Confidence                      1223445788999887776542          24 999999987654      55543 34688999999


Q ss_pred             C-e-EEEEec-CCCcEEEEeCCCccccccc
Q 010784          403 Y-K-IVTGGR-DDLRINIWETDTGMLANSL  429 (501)
Q Consensus       403 ~-~-~l~~gs-~dg~i~iwd~~~~~~~~~~  429 (501)
                      + + +++++. .++.|.++|+.+++.+.++
T Consensus       328 Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          328 DGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            9 5 666665 5899999999999998883

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.46  E-value=2.9e-10  Score=102.89  Aligned_cols=239  Identities=6%  Similarity=-0.075  Sum_probs=163.9

Q ss_pred             ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCceeeec--cCCCCceEEEEeeecCCCCCCEEEE
Q 010784          150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCF--KGHNGPVSTLSDKLLGDGSGKILAS  227 (501)
Q Consensus       150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~h~~~v~~l~~s~~~~~~~~~l~s  227 (501)
                      ..+...+.++++.+             +|+++++...++.|.+||.......+  ..+...+.++++.    +++.++++
T Consensus        11 ~~~~~~~~~i~~d~-------------~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~----~~g~l~v~   73 (299)
T 2z2n_A           11 TNQDTGPYGITVSD-------------KGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTIS----SDGEVWFT   73 (299)
T ss_dssp             CSSSCCEEEEEECT-------------TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEEC----TTSCEEEE
T ss_pred             CCcCCCccceEECC-------------CCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEEC----CCCCEEEe
Confidence            34556799999998             78888877778899999932333333  2345678899985    78888887


Q ss_pred             eeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCC
Q 010784          228 GGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG  307 (501)
Q Consensus       228 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  307 (501)
                      ...++.|..||.. +..     ....+......+..+++.+ ++.++++...++.|..||. +++...            
T Consensus        74 ~~~~~~i~~~~~~-g~~-----~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~------------  133 (299)
T 2z2n_A           74 ENAANKIGRITKK-GII-----KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIRE------------  133 (299)
T ss_dssp             ETTTTEEEEECTT-SCE-----EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEE------------
T ss_pred             CCCCCeEEEECCC-CcE-----EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEE------------
Confidence            7778899999976 221     1112223455688899986 6777777777889999987 442210            


Q ss_pred             CceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcc
Q 010784          308 VPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMA  386 (501)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~  386 (501)
                                                     .........+..++++++|+++++...++ |..||. +++..     ..
T Consensus       134 -------------------------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-----~~  176 (299)
T 2z2n_A          134 -------------------------------YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT-----EF  176 (299)
T ss_dssp             -------------------------------EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-----EE
T ss_pred             -------------------------------ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE-----Ee
Confidence                                           00111245678999999998888877656 999998 54321     01


Q ss_pred             cccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEE
Q 010784          387 ELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQ  465 (501)
Q Consensus       387 ~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~  465 (501)
                      .+..+...+..++++++ .++++...++.|.+||. +++... +..   ..+...+..++++++|++.++..  .++.|.
T Consensus       177 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~---~~~~~~~~~i~~~~~g~l~v~~~--~~~~i~  249 (299)
T 2z2n_A          177 KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKI---PTPNARPHAITAGAGIDLWFTEW--GANKIG  249 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC---SSTTCCEEEEEECSTTCEEEEET--TTTEEE
T ss_pred             eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EEC---CCCCCCceeEEECCCCCEEEecc--CCceEE
Confidence            12233456889999998 87777667889999998 665432 211   22345688999999999777664  457888


Q ss_pred             Eeec
Q 010784          466 FRDF  469 (501)
Q Consensus       466 ~w~~  469 (501)
                      .|+.
T Consensus       250 ~~d~  253 (299)
T 2z2n_A          250 RLTS  253 (299)
T ss_dssp             EEET
T ss_pred             EECC
Confidence            8886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.42  E-value=1.6e-10  Score=109.19  Aligned_cols=247  Identities=8%  Similarity=-0.009  Sum_probs=158.0

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC--c
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH--S  189 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~  189 (501)
                      .+..|++++++.++++...++.|++||..++ ........ ..... ++|++             +++.|+++..++  .
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g-~~~~~~~~-~~~~~-ia~~~-------------~g~~l~~~d~~~~~~  195 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDN-KVTTVHPG-FKGGK-PAVTK-------------DKQRVYSIGWEGTHT  195 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTT-EEEEEEET-CCBCB-CEECT-------------TSSEEEEEBSSTTCE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCC-EEEEeecc-CCCCc-eeEec-------------CCCcEEEEecCCCce
Confidence            3788999999999998888899999999864 44333333 33334 88888             788888888766  6


Q ss_pred             eEEec--CCceeeec----cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee--ccCCCCce
Q 010784          190 IRLWW--KGSCQRCF----KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT--LYGHEKPI  261 (501)
Q Consensus       190 i~vwd--~~~~~~~~----~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v  261 (501)
                      |.+++  .+.....+    ......+.+++++    +++..|+.+..++.|+.||..++..    .....  ..++...-
T Consensus       196 I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~----p~~g~lyv~d~~~~I~~~d~~~~~~----~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          196 VYVYMKASGWAPTRIGQLGSTFSGKIGAVALD----ETEEWLYFVDSNKNFGRFNVKTQEV----TLIKQLELSGSLGTN  267 (409)
T ss_dssp             EEEEEGGGTTCEEEEEECCTTSCSCCCBCEEC----TTSSEEEEECTTCEEEEEETTTCCE----EEEEECCCCSCCCCS
T ss_pred             EEEEEcCCCceeEEeeeccchhcCCcEEEEEe----CCCCeEEEEECCCcEEEEECCCCCE----EEEecccccCCCCCC
Confidence            88887  22222232    2245567788886    6444555577788999999987642    01100  22222222


Q ss_pred             --eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          262 --KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       262 --~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                        ..++++|.++.++++-..++.|+.|+......  .  ........+.                        ..+   .
T Consensus       268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~--~--~~g~~~~~g~------------------------~dg---~  316 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE--W--FCGSATQKTV------------------------QDG---L  316 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--E--EEECTTCCSC------------------------BCE---E
T ss_pred             ccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--E--EEeCCCCCCc------------------------CCC---c
Confidence              38999986677888878889999998764310  0  0000000000                        000   0


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCc---------------ccCeEEEEecC
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGH---------------VGSVTQLHMDP  402 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~~~  402 (501)
                      .....-.....++++++|+++++-+ .+. |+.|++.++..       .++.++               -.....+++++
T Consensus       317 ~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-------~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~  389 (409)
T 3hrp_A          317 REEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-------STVAGQVDVASQIDGTPLEATFNYPYDICYDG  389 (409)
T ss_dssp             GGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-------EEEEECTTCBSCCCBSTTTCCBSSEEEEEECS
T ss_pred             ccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-------EEEeCCCCCCCcCCCChhceEeCCceEEEEcC
Confidence            0000123468899999999888877 667 99999766542       222222               24588999999


Q ss_pred             C-eEEEEecCCCcEEEEeC
Q 010784          403 Y-KIVTGGRDDLRINIWET  420 (501)
Q Consensus       403 ~-~~l~~gs~dg~i~iwd~  420 (501)
                      + .++++-..+++|+.+++
T Consensus       390 ~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          390 EGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             SSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEECCCCeEEEEEe
Confidence            8 88888888889988875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.41  E-value=7.4e-10  Score=103.16  Aligned_cols=266  Identities=11%  Similarity=-0.027  Sum_probs=164.0

Q ss_pred             cCcEEEEeeC--CC---ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee----------CCCcEEEEec
Q 010784          177 TENVLVTSSC--DH---SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG----------EDATVRLWSL  239 (501)
Q Consensus       177 ~~~~l~s~~~--dg---~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~----------~dg~i~iwd~  239 (501)
                      ++++++....  ..   +|.++|  +++.+..+.....+  .++++    +++++++.+.          .++.|.+||.
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~s----pDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAA----HSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEEC----CCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            6676666553  22   789999  77777777654444  88887    8999999886          3678999999


Q ss_pred             cCCCccccccceeeccCC-------CCceeEEEEeecCCeEEEEEeC--CCeEEEEECCCCccccc-eecccceecCCCc
Q 010784          240 SSSGKRGQQALKATLYGH-------EKPIKLMSVAGHKSFLLVTISK--DSKVRVWDTSTSSAVRS-SCCVGMTSVPGVP  309 (501)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~  309 (501)
                      .+.+.      +..+...       ...-..+.++| ++++|+++..  ++.|.++| .+++.+.. ..      ..+. 
T Consensus       105 ~t~~~------~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~------~~~~-  169 (373)
T 2mad_H          105 VTFLP------IADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS------SPTC-  169 (373)
T ss_pred             CCCcE------EEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC------CCce-
Confidence            87653      3322211       12235789998 6777777764  57899999 88865433 21      1111 


Q ss_pred             eeeecCCCeEEEE--eCCcEEEEEcCCCceEeeec-----cCCCc-EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784          310 VDMKCHESMLYIA--SGSSVVTIDLRTMQKVMTPA-----ICKPI-LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV  380 (501)
Q Consensus       310 ~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~-----~~~~~-v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  380 (501)
                      ..+.......+++  .++.+.++|. +++......     ....+ .....+.+++..++..+.++ +.+.|+...... 
T Consensus       170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~-  247 (373)
T 2mad_H          170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT-  247 (373)
T ss_pred             EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce-
Confidence            1222222223332  2357888888 776653221     11222 12345566544433333455 999998764321 


Q ss_pred             CCCCcccccC----------cccCeEEEEecCC--eEEEEec---------CCCcEEEEeCCCcccccccccCCCCCCCc
Q 010784          381 KPQPMAELDG----------HVGSVTQLHMDPY--KIVTGGR---------DDLRINIWETDTGMLANSLLCNYPEEADI  439 (501)
Q Consensus       381 ~~~~~~~~~~----------h~~~v~~l~~~~~--~~l~~gs---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  439 (501)
                         .+..+..          .......+.++|+  +++++..         ..+.|.++|..+++.+.++..      ..
T Consensus       248 ---v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~------g~  318 (373)
T 2mad_H          248 ---NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------GH  318 (373)
T ss_pred             ---EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC------CC
Confidence               0111110          1123445778888  5555532         135799999999999988843      22


Q ss_pred             ceeeeEeecccc-EEEEeecCCCceEEEeeccCCccc
Q 010784          440 STGCSAMAVSGC-RIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       440 ~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      ....++|+|||+ +++++.. .++.|.++|..+.+..
T Consensus       319 ~p~~i~~s~Dg~~~l~v~~~-~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          319 DVDAISVAQDGGPDLYALSA-GTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CcCeEEECCCCCeEEEEEcC-CCCeEEEEECCCCCEE
Confidence            578999999999 6777653 3699999999887753

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.40  E-value=9.9e-11  Score=107.54  Aligned_cols=273  Identities=12%  Similarity=0.030  Sum_probs=168.4

Q ss_pred             CCcCcEEEEeeC-----CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee----------CCCcEEEE
Q 010784          175 QRTENVLVTSSC-----DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG----------EDATVRLW  237 (501)
Q Consensus       175 ~~~~~~l~s~~~-----dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~----------~dg~i~iw  237 (501)
                      .|+++.++....     ++.|.+.|  +++.+..+.....+ . +.++    ++|++++++.          .++.|.+|
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~s----pDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVA----DDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEEC----TTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEEC----CCCCEEEEEcccccccccCCCCCEEEEE
Confidence            347887777765     67999999  77777777755555 3 8887    8999888775          36789999


Q ss_pred             eccCCCccccccceeeccCC-------CCceeEEEEeecCCeEEEEEeC--CCeEEEEECCCCccccceecccceecCCC
Q 010784          238 SLSSSGKRGQQALKATLYGH-------EKPIKLMSVAGHKSFLLVTISK--DSKVRVWDTSTSSAVRSSCCVGMTSVPGV  308 (501)
Q Consensus       238 d~~~~~~~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  308 (501)
                      |..+.+.      +..+...       ...-..+.++| ++++++.+..  ++.|.++|+.+++.+.....      .+.
T Consensus       115 D~~t~~v------~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v------~g~  181 (386)
T 3sjl_D          115 DPVTLLP------TADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV------PDC  181 (386)
T ss_dssp             CTTTCCE------EEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC------CSE
T ss_pred             ECCCCeE------EEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC------CCc
Confidence            9998763      4443211       12345689998 6777776653  68999999999976655432      111


Q ss_pred             ceeeecCCCeEEE-EeCCcEEEEEcCC-CceEeeeccC----CCcEE-EEEE-cCCCcEEEEEcCCcEEEEecCCCCCCC
Q 010784          309 PVDMKCHESMLYI-ASGSSVVTIDLRT-MQKVMTPAIC----KPILH-SFSI-MPSKSLICTGGIGKAMTWDIRRSQDAV  380 (501)
Q Consensus       309 ~~~~~~~~~~~~~-~~~~~i~~~d~~~-~~~~~~~~~~----~~~v~-~v~~-~~~~~~l~~~~~d~i~iwd~~~~~~~~  380 (501)
                      ...........+. +.++.+.+.++.+ ++.......+    ..++. ...| .++|++++....+.+++.|+.......
T Consensus       182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v  261 (386)
T 3sjl_D          182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF  261 (386)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE
T ss_pred             ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCccee
Confidence            1111111122222 2334666666654 3332211111    12221 2355 367877665554449999997654210


Q ss_pred             CCCCccccc------C-cccCeEEEEecCC--eEEEEec---------CCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784          381 KPQPMAELD------G-HVGSVTQLHMDPY--KIVTGGR---------DDLRINIWETDTGMLANSLLCNYPEEADISTG  442 (501)
Q Consensus       381 ~~~~~~~~~------~-h~~~v~~l~~~~~--~~l~~gs---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  442 (501)
                       ...+..+.      + ..+....++++++  +++++-.         ..+.|.+.|+.+++.+.++..      ...+.
T Consensus       262 -~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v------g~~~~  334 (386)
T 3sjl_D          262 -LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM------GHEID  334 (386)
T ss_dssp             -CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEEC
T ss_pred             -ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC------CCCcc
Confidence             11111000      0 1233445777887  5555532         125799999999999999853      23678


Q ss_pred             eeEeecccc-EEEEeecCCCceEEEeeccCCcc
Q 010784          443 CSAMAVSGC-RIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       443 ~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      .+++++|++ +|+++.. .++.|.++|..++..
T Consensus       335 ~lavs~D~~~~ly~tn~-~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          335 SINVSQDEKPLLYALST-GDKTLYIHDAESGEE  366 (386)
T ss_dssp             EEEECSSSSCEEEEEET-TTTEEEEEETTTCCE
T ss_pred             eEEECCCCCeEEEEEcC-CCCeEEEEECCCCcE
Confidence            999999997 6766543 579999999987764

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.39  E-value=2.7e-13  Score=86.21  Aligned_cols=47  Identities=21%  Similarity=0.375  Sum_probs=40.3

Q ss_pred             CcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHH
Q 010784           17 TTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRL   63 (501)
Q Consensus        17 ~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~   63 (501)
                      ...+..||.|++.+||+||+++||.++++|||+|+.++.++.+|+.+
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            35678999999999999999999999999999999999999999875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.34  E-value=5.5e-10  Score=101.01  Aligned_cols=233  Identities=9%  Similarity=0.022  Sum_probs=144.9

Q ss_pred             CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC
Q 010784          152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE  230 (501)
Q Consensus       152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~  230 (501)
                      +..--.+..|++.            ++.++++...++.|..|| .+.....+. ....+.+++++    ++++++++ . 
T Consensus        11 ~~~~~Egp~w~~~------------~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~----~dG~l~v~-~-   71 (297)
T 3g4e_A           11 NCRCGESPVWEEV------------SNSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVSSVALR----QSGGYVAT-I-   71 (297)
T ss_dssp             CCSBEEEEEEETT------------TTEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEEEEEEB----TTSSEEEE-E-
T ss_pred             CCccccCCeEECC------------CCEEEEEECCCCEEEEEECCCCcEEEEe-CCCceEEEEEC----CCCCEEEE-E-
Confidence            3345567888883            466777777889999999 333333333 45678999996    78885554 3 


Q ss_pred             CCcEEEEeccCCCccccccceeeccC--CCCceeEEEEeecCCeEEEEEeCCC---------eEEEEECCCCccccceec
Q 010784          231 DATVRLWSLSSSGKRGQQALKATLYG--HEKPIKLMSVAGHKSFLLVTISKDS---------KVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~l~s~s~dg---------~v~vwd~~~~~~~~~~~~  299 (501)
                      ++.|.+||..++..    ..+.....  ....+..+++.+ +++++++.....         .-.+|.+...        
T Consensus        72 ~~~l~~~d~~~g~~----~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--------  138 (297)
T 3g4e_A           72 GTKFCALNWKEQSA----VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPD--------  138 (297)
T ss_dssp             TTEEEEEETTTTEE----EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTT--------
T ss_pred             CCeEEEEECCCCcE----EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECC--------
Confidence            56899999887642    11111111  123467888887 566555443211         1222222211        


Q ss_pred             ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEE-EEcCCc-EEEEecC--C
Q 010784          300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLIC-TGGIGK-AMTWDIR--R  375 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~d~-i~iwd~~--~  375 (501)
                                                         ++ ...+..+....+.++|+|+++.++ +.+.++ |.+||+.  +
T Consensus       139 -----------------------------------g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~  182 (297)
T 3g4e_A          139 -----------------------------------HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT  182 (297)
T ss_dssp             -----------------------------------SC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT
T ss_pred             -----------------------------------CC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCC
Confidence                                               01 111111223457899999998665 444455 9999874  3


Q ss_pred             CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEee-ccccEE
Q 010784          376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMA-VSGCRI  453 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l  453 (501)
                      +... ..+.+..+..+.+.+..++++++ ++.++....+.|.+||..+++.+..+.     .+...+++++|. |+++.|
T Consensus       183 G~~~-~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-----~p~~~~t~~~f~g~d~~~L  256 (297)
T 3g4e_A          183 GQIS-NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-----LPVDKTTSCCFGGKNYSEM  256 (297)
T ss_dssp             CCEE-EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE-----CSSSBEEEEEEESGGGCEE
T ss_pred             Cccc-CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE-----CCCCCceEEEEeCCCCCEE
Confidence            3211 01112233334456789999999 888887678889999999999888884     334578999998 898877


Q ss_pred             EEeec
Q 010784          454 VTASY  458 (501)
Q Consensus       454 ~s~~~  458 (501)
                      +.++.
T Consensus       257 ~vt~~  261 (297)
T 3g4e_A          257 YVTCA  261 (297)
T ss_dssp             EEEEB
T ss_pred             EEEcC
Confidence            66654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.34  E-value=6.2e-10  Score=105.22  Aligned_cols=242  Identities=7%  Similarity=-0.058  Sum_probs=151.6

Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC-
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA-  232 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg-  232 (501)
                      ....|+|++             +++++++...++.|++|| .+..+..+........ ++|+    ++++.|+++..++ 
T Consensus       132 ~P~~la~d~-------------~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~----~~g~~l~~~d~~~~  193 (409)
T 3hrp_A          132 YMWGIAAVG-------------NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVT----KDKQRVYSIGWEGT  193 (409)
T ss_dssp             CEEEEEECS-------------TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEEC----TTSSEEEEEBSSTT
T ss_pred             CceEEEEeC-------------CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEe----cCCCcEEEEecCCC
Confidence            456677766             788888888889999999 4333333322222233 7885    8888888888766 


Q ss_pred             -cEEEEeccCCCccccccceeec-cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784          233 -TVRLWSLSSSGKRGQQALKATL-YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV  310 (501)
Q Consensus       233 -~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  310 (501)
                       .|.+++...+..   ......+ ......+.+++++|.++.+++ +..++.|+.||..++..... ...          
T Consensus       194 ~~I~~~d~~~~~~---~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~-~~~----------  258 (409)
T 3hrp_A          194 HTVYVYMKASGWA---PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLI-KQL----------  258 (409)
T ss_dssp             CEEEEEEGGGTTC---EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEE-EEC----------
T ss_pred             ceEEEEEcCCCce---eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEE-ecc----------
Confidence             788888766542   0011111 214456778899975555444 67788999999886632100 000          


Q ss_pred             eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCc--EEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcc
Q 010784          311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPI--LHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMA  386 (501)
Q Consensus       311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~  386 (501)
                                                   ...++...  ...++|+|+ +.++++...+. |+.|+.....        .
T Consensus       259 -----------------------------~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~--------~  301 (409)
T 3hrp_A          259 -----------------------------ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC--------E  301 (409)
T ss_dssp             -----------------------------CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE--------E
T ss_pred             -----------------------------cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE--------E
Confidence                                         00011111  128999995 66666666666 9999876421        1


Q ss_pred             cccCc---------------ccCeEEEEecCC-eEEEEec-CCCcEEEEeCCCcccccccccCC-CC---------CCCc
Q 010784          387 ELDGH---------------VGSVTQLHMDPY-KIVTGGR-DDLRINIWETDTGMLANSLLCNY-PE---------EADI  439 (501)
Q Consensus       387 ~~~~h---------------~~~v~~l~~~~~-~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~-~~---------~~~~  439 (501)
                      .+.++               -.....++++|+ .++++-+ .++.|+.|++.+++.. ++..+. ..         ..-.
T Consensus       302 ~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~  380 (409)
T 3hrp_A          302 WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFN  380 (409)
T ss_dssp             EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBS
T ss_pred             EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeC
Confidence            12111               134789999999 8888887 8999999998777643 332210 00         0124


Q ss_pred             ceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          440 STGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      ....++++++|.++++-.  .+++|+.+++
T Consensus       381 ~P~giavd~~g~lyVad~--~n~~Ir~i~~  408 (409)
T 3hrp_A          381 YPYDICYDGEGGYWIAEA--WGKAIRKYAV  408 (409)
T ss_dssp             SEEEEEECSSSEEEEEES--TTCEEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEC--CCCeEEEEEe
Confidence            578899999988777776  5688887765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.33  E-value=8.3e-09  Score=93.27  Aligned_cols=238  Identities=8%  Similarity=-0.082  Sum_probs=160.5

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCceeee--ccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRC--FKGHNGPVSTLSDKLLGDGSGKILASG  228 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~h~~~v~~l~~s~~~~~~~~~l~sg  228 (501)
                      .....+.++++.+             +|+++++...++.|.+||.......  +..+...+.++++.    +++.++++.
T Consensus        17 ~~~~~p~~i~~d~-------------~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~g~l~v~~   79 (300)
T 2qc5_A           17 IPDSGPYGITSSE-------------DGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVS----SLGDIWFTE   79 (300)
T ss_dssp             STTCCEEEEEECT-------------TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEEC----TTSCEEEEE
T ss_pred             CCCCCcceeeECC-------------CCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEEC----CCCCEEEEe
Confidence            3446788999988             7888888777899999992232322  22334678888885    788887777


Q ss_pred             eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC
Q 010784          229 GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV  308 (501)
Q Consensus       229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  308 (501)
                      ..++.|..+|.. +..     ...........+..+++.+ ++.++++...++.|..+|.. ++...             
T Consensus        80 ~~~~~v~~~d~~-g~~-----~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~-------------  138 (300)
T 2qc5_A           80 NGANKIGKLSKK-GGF-----TEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYE-------------  138 (300)
T ss_dssp             TTTTEEEEECTT-SCE-----EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEE-------------
T ss_pred             cCCCeEEEECCC-CCe-----EEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEE-------------
Confidence            667889999987 432     1122222345688899986 67777777667889999876 43210             


Q ss_pred             ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc
Q 010784          309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE  387 (501)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~  387 (501)
                                                    ..+......+..+++.++++++++...++ |..+|. +++..     ...
T Consensus       139 ------------------------------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-----~~~  182 (300)
T 2qc5_A          139 ------------------------------YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE-----EYP  182 (300)
T ss_dssp             ------------------------------EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-----EEE
T ss_pred             ------------------------------ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE-----Eee
Confidence                                          00111235678899999999777776555 999998 43321     112


Q ss_pred             ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784          388 LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQF  466 (501)
Q Consensus       388 ~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~  466 (501)
                      ...+...+..++++++ .++++....+.|.+|+. +++......    ......+.+++++++|++.++..  .++.|..
T Consensus       183 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~--~~~~i~~  255 (300)
T 2qc5_A          183 LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI----PTPNARPHAITAGKNSEIWFTEW--GANQIGR  255 (300)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECSTTCEEEEET--TTTEEEE
T ss_pred             CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC----CCCCCCceEEEECCCCCEEEecc--CCCeEEE
Confidence            2233456889999998 78777666778999998 554433211    12345678999999999777665  4578888


Q ss_pred             eec
Q 010784          467 RDF  469 (501)
Q Consensus       467 w~~  469 (501)
                      ++.
T Consensus       256 ~~~  258 (300)
T 2qc5_A          256 ITN  258 (300)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            886

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.32  E-value=1.2e-10  Score=119.53  Aligned_cols=238  Identities=12%  Similarity=0.004  Sum_probs=146.8

Q ss_pred             CCceEEeeCCcEEEeecCCe-----eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          112 PHDHILLDNNDIFSTQGSSI-----QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d-----~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      .+..++|||||+++|.++.+     ..|++||+.++ +.+.. ..+...+..++|+|             | +.|+.++.
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg-~~~~~-~~~~~~~~~~~wsp-------------D-~~l~~~~~  227 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG-KPLAD-ELKWVKFSGLAWLG-------------N-DALLYSRF  227 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC-CEEEE-EEEEEESCCCEEST-------------T-SEEEEEEC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC-CCCCc-cCCCceeccEEEEC-------------C-CEEEEEEe
Confidence            46788999999999876554     67999999986 33322 11222235788888             8 88888777


Q ss_pred             CCc--------------eEEec--CCc----eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC-----cEEEEeccC
Q 010784          187 DHS--------------IRLWW--KGS----CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA-----TVRLWSLSS  241 (501)
Q Consensus       187 dg~--------------i~vwd--~~~----~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg-----~i~iwd~~~  241 (501)
                      ++.              |++|+  ++.    .+.....+...+..+.|+    ++|++|+..+.++     .|.+||+.+
T Consensus       228 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S----pDG~~l~~~~~~~~~~~~~l~~~d~~~  303 (741)
T 1yr2_A          228 AEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS----SDGRWVVITSSEGTDPVNTVHVARVTN  303 (741)
T ss_dssp             CCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC----TTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred             cCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC----CCCCEEEEEEEccCCCcceEEEEECCC
Confidence            654              78887  332    222223333457888997    8999888777544     899999987


Q ss_pred             CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC----CCeEEEEECCCCccccceecccceecCCCceeeecCCC
Q 010784          242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK----DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHES  317 (501)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (501)
                      +..    .....+..+...+.... .+ ++..|+..+.    ++.|.+||+.++.  .                      
T Consensus       304 ~~~----~~~~~l~~~~~~~~~~~-~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~--~----------------------  353 (741)
T 1yr2_A          304 GKI----GPVTALIPDLKAQWDFV-DG-VGDQLWFVSGDGAPLKKIVRVDLSGST--P----------------------  353 (741)
T ss_dssp             TEE----CCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEECSSSS--C----------------------
T ss_pred             CCC----cccEEecCCCCceEEEE-ec-cCCEEEEEECCCCCCCEEEEEeCCCCc--c----------------------
Confidence            621    00233444444444443 35 4555555554    3458888876531  0                      


Q ss_pred             eEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecC-CCCCCCCCCCcccccC-cccC
Q 010784          318 MLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIR-RSQDAVKPQPMAELDG-HVGS  394 (501)
Q Consensus       318 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~-h~~~  394 (501)
                                        +....+..+...+.++.++ ++.++++...++ .+||.+. .++.      ...+.. +.+.
T Consensus       354 ------------------~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~------~~~l~~~~~~~  408 (741)
T 1yr2_A          354 ------------------RFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP------AGAVSLPGIGS  408 (741)
T ss_dssp             ------------------EEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE------EEECBCSSSCE
T ss_pred             ------------------ccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc------eeeccCCCCeE
Confidence                              0011122234456677777 667777777766 6666443 2222      234443 3567


Q ss_pred             eEEEEecCC--eEEEEe---cCCCcEEEEeCCCcc
Q 010784          395 VTQLHMDPY--KIVTGG---RDDLRINIWETDTGM  424 (501)
Q Consensus       395 v~~l~~~~~--~~l~~g---s~dg~i~iwd~~~~~  424 (501)
                      +..+.++|+  .++++.   ...++|++||+.+++
T Consensus       409 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          409 ASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            888999987  444433   245789999998876

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.29  E-value=1.3e-10  Score=107.34  Aligned_cols=144  Identities=10%  Similarity=0.077  Sum_probs=107.7

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccc--------c-ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY--------Y-RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV  182 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~--------~-~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (501)
                      +++.+++++.+.++++|+.++.+. |+++...+        . ......+.. |+.|+| .              ++.|+
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v-~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d--------------~~~L~  101 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVV-GELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-H--------------GDQVL  101 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEE-EEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-E--------------TTEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEE-EEhhHhhhhhccccccccceEEeeCCC-eeEEEE-C--------------CCEEE
Confidence            599999999999999998876554 98765321        1 112334666 999999 3              58888


Q ss_pred             EeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784          183 TSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP  260 (501)
Q Consensus       183 s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  260 (501)
                      ++ .++.|++||  ..........|..++.++.+.   .+   .++++..||.|.+||+.++..      ..    +...
T Consensus       102 v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~---~p---~~av~~~dG~L~v~dl~~~~~------~~----~~~~  164 (388)
T 1xip_A          102 VS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNV---NN---TLVILNSVNDLSALDLRTKST------KQ----LAQN  164 (388)
T ss_dssp             EE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEEC---SS---EEEEEETTSEEEEEETTTCCE------EE----EEES
T ss_pred             EE-cCCcEEEEEchhhhccCccceeecceeeEEec---CC---CEEEEECCCCEEEEEccCCcc------cc----ccCC
Confidence            88 889999999  223334455677888888874   12   288889999999999997653      21    4468


Q ss_pred             eeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784          261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS  292 (501)
Q Consensus       261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~  292 (501)
                      |++++|+| ++  ++.|..||.+++|+....+
T Consensus       165 Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          165 VTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             EEEEEECS-SE--EEEEETTSCEEEEEEETTE
T ss_pred             ceEEEEcC-Cc--eEEEEcCCcEEEEcCCCcc
Confidence            99999998 55  6789999999999887654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.28  E-value=3.8e-09  Score=99.07  Aligned_cols=295  Identities=10%  Similarity=0.017  Sum_probs=169.9

Q ss_pred             EEeecCCeeeEEEEecccccccceecccC---------CcceeE-EEeeccCcCcccccCCCCcCcEEEEeeCCCceEEe
Q 010784          124 FSTQGSSIQNIKIDNFLSESYYRATLSDH---------KARITC-MRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW  193 (501)
Q Consensus       124 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~h---------~~~V~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  193 (501)
                      .+..++.++.+..+|..++ +.+......         ...+.+ +..               ++..++.++.++.|..+
T Consensus        55 ~v~~~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~v~~~~g~l~a~  118 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADDG-KEIWSVSLAEKDGWFSKEPALLSGGVTV---------------SGGHVYIGSEKAQVYAL  118 (376)
T ss_dssp             EEEEECTTSEEEEEETTTC-CEEEEEECCC---CCSCCCCCEEEEEEE---------------ETTEEEEEETTSEEEEE
T ss_pred             EEEEEcCCCeEEEEEccCC-ceeeeecCccccccccccCcccccCceE---------------eCCEEEEEcCCCEEEEE
Confidence            3344455788999999886 444443321         122222 222               45678888889999999


Q ss_pred             c--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce-----eEEEE
Q 010784          194 W--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI-----KLMSV  266 (501)
Q Consensus       194 d--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-----~~l~~  266 (501)
                      |  +++.+-..............      .+..++.++.++.|..+|..+++.      +..........     .....
T Consensus       119 d~~tG~~~W~~~~~~~~~~~p~~------~~~~v~v~~~~g~l~~~d~~tG~~------~W~~~~~~~~~~~~~~~~~~~  186 (376)
T 3q7m_A          119 NTSDGTVAWQTKVAGEALSRPVV------SDGLVLIHTSNGQLQALNEADGAV------KWTVNLDMPSLSLRGESAPTT  186 (376)
T ss_dssp             ETTTCCEEEEEECSSCCCSCCEE------ETTEEEEECTTSEEEEEETTTCCE------EEEEECCC-----CCCCCCEE
T ss_pred             ECCCCCEEEEEeCCCceEcCCEE------ECCEEEEEcCCCeEEEEECCCCcE------EEEEeCCCCceeecCCCCcEE
Confidence            9  67766555433322222222      234777888899999999988874      33222211110     11122


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceecccceec---C---CCceeeecCCCeEEEEe-CCcEEEEEcCCCceEe
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV---P---GVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVM  339 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~  339 (501)
                      .  + ..++.++.++.|..+|..+++.............   .   ............+++++ .+.+..+|.++++.+.
T Consensus       187 ~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w  263 (376)
T 3q7m_A          187 A--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMW  263 (376)
T ss_dssp             E--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEE
T ss_pred             E--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEe
Confidence            2  3 3677788899999999999876544322111000   0   00011122345566665 4689999999999887


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc-CcccCeEEEEecCCeEEEEecCCCcEEE
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD-GHVGSVTQLHMDPYKIVTGGRDDLRINI  417 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~l~~gs~dg~i~i  417 (501)
                      ....  .....+..  ++..++.++.++ +..+|..+++..      .... .....+.......+.++++ +.+|.|.+
T Consensus       264 ~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~------w~~~~~~~~~~~~~~~~~~~l~v~-~~~g~l~~  332 (376)
T 3q7m_A          264 KREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTL------WTQSDLLHRLLTSPVLYNGNLVVG-DSEGYLHW  332 (376)
T ss_dssp             EECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEE------EEECTTTTSCCCCCEEETTEEEEE-CTTSEEEE
T ss_pred             eccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEE------EeecccCCCcccCCEEECCEEEEE-eCCCeEEE
Confidence            6653  23444444  344555566555 999999988654      2222 1112223333334455554 58999999


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      +|..+++.+..+...     ...+...... .+..|+.++  .+|.|..|+
T Consensus       333 ~d~~tG~~~~~~~~~-----~~~~~~~~~~-~~~~l~v~~--~~G~l~~~~  375 (376)
T 3q7m_A          333 INVEDGRFVAQQKVD-----SSGFQTEPVA-ADGKLLIQA--KDGTVYSIT  375 (376)
T ss_dssp             EETTTCCEEEEEECC-----TTCBCSCCEE-ETTEEEEEB--TTSCEEEEE
T ss_pred             EECCCCcEEEEEecC-----CCcceeCCEE-ECCEEEEEe--CCCEEEEEe
Confidence            999999988776421     1122221111 345666676  569998886

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.28  E-value=1.9e-09  Score=97.44  Aligned_cols=227  Identities=10%  Similarity=0.025  Sum_probs=144.9

Q ss_pred             CceEEeeC-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          113 HDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       113 i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      .....|++ ++.++.+....+.|..||..++ +. ..+ .....+.++++++             +|+++++ . ++.|.
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~-~~-~~~-~~~~~~~~i~~~~-------------dG~l~v~-~-~~~l~   76 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTK-QV-QRV-TMDAPVSSVALRQ-------------SGGYVAT-I-GTKFC   76 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTC-CE-EEE-ECSSCEEEEEEBT-------------TSSEEEE-E-TTEEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCC-cE-EEE-eCCCceEEEEECC-------------CCCEEEE-E-CCeEE
Confidence            56888888 5677788888899999998864 22 222 3456799999998             7785554 3 56788


Q ss_pred             Eec--CCceeeeccC----CCCceEEEEeeecCCCCCCEEEEeeCC---------CcEEEEeccCCCccccccceeeccC
Q 010784          192 LWW--KGSCQRCFKG----HNGPVSTLSDKLLGDGSGKILASGGED---------ATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       192 vwd--~~~~~~~~~~----h~~~v~~l~~s~~~~~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      +||  +++.......    ....++.+++.    ++|+++++...+         ..-.+|.++....      ...+..
T Consensus        77 ~~d~~~g~~~~~~~~~~~~~~~~~~di~~d----~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~------~~~~~~  146 (297)
T 3g4e_A           77 ALNWKEQSAVVLATVDNDKKNNRFNDGKVD----PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH------VKKYFD  146 (297)
T ss_dssp             EEETTTTEEEEEEECCTTCSSEEEEEEEEC----TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC------EEEEEE
T ss_pred             EEECCCCcEEEEEecCCCCCCCCCCCEEEC----CCCCEEEecCCcccccccccCCCcEEEEEECCCC------EEEEee
Confidence            998  3333221111    12357788885    788877654321         3345666654332      222222


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECC--CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS--TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                      +......++|+|+...++++.+.++.|.+||+.  ++....                                       
T Consensus       147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~---------------------------------------  187 (297)
T 3g4e_A          147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN---------------------------------------  187 (297)
T ss_dssp             EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE---------------------------------------
T ss_pred             ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC---------------------------------------
Confidence            334457899998444455666778899999873  442100                                       


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec-CC--eEEEEec
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD-PY--KIVTGGR  410 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~--~~l~~gs  410 (501)
                      .+....+..+......++++++|++.++...++ |..||..+++..      ..+..+...+++++|. |+  .++++..
T Consensus       188 ~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~------~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          188 RRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL------QTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE------EEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             cEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE------EEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            011112222345678899999998888877776 999999876644      5666666789999998 66  5555544


Q ss_pred             CC
Q 010784          411 DD  412 (501)
Q Consensus       411 ~d  412 (501)
                      .+
T Consensus       262 ~~  263 (297)
T 3g4e_A          262 RD  263 (297)
T ss_dssp             CT
T ss_pred             Cc
Confidence            43

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.27  E-value=3.1e-10  Score=104.37  Aligned_cols=299  Identities=11%  Similarity=-0.006  Sum_probs=181.6

Q ss_pred             ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEe
Q 010784          114 DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW  193 (501)
Q Consensus       114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  193 (501)
                      .+..++.++.+.+ |+.++.+..+| .++ +.......+...+.++...+             ++. +..++.+  |..+
T Consensus        23 ~~~~~d~~g~l~v-~t~~~~l~~~d-~~g-~~~~~~~~~~~~~~~~~~~~-------------~g~-l~v~t~~--l~~~   83 (330)
T 3hxj_A           23 SSPILAKNGTIYL-GSSNKNLYAIN-TDG-SVKWFFKSGEIIECRPSIGK-------------DGT-IYFGSDK--VYAI   83 (330)
T ss_dssp             CCCEECTTSCEEC-SSTTTTTEEEC-TTS-CEEESSCGGGEEEECCEETT-------------TTE-ECCSSCE--EEEE
T ss_pred             cCceEccCCeEEE-EcCCCEEEEEC-CCC-cEEEEEecCCCcccceEEec-------------CCc-EEEecCc--EEEE
Confidence            4566666666544 45667788888 664 54544444444556666654             444 5555544  8888


Q ss_pred             c-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCe
Q 010784          194 W-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSF  272 (501)
Q Consensus       194 d-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  272 (501)
                      | +++.+..+...........+     . +..++.++.++.|..+|.. +..      ......+...+.++...+ ++ 
T Consensus        84 d~~g~~~~~~~~~~~~~~~~~~-----~-~~~l~v~t~~~~l~~~d~~-g~~------~~~~~~~~~~~~~~~~~~-~g-  148 (330)
T 3hxj_A           84 NPDGTEKWRFDTKKAIVSDFTI-----F-EDILYVTSMDGHLYAINTD-GTE------KWRFKTKKAIYATPIVSE-DG-  148 (330)
T ss_dssp             CCCGGGGGGSCC-----CCEEE-----E-TTEEEEECTTSEEEEECTT-SCE------EEEEECSSCCCSCCEECT-TS-
T ss_pred             CCCCcEEEEEECCCCcccCceE-----E-CCEEEEEecCCEEEEEcCC-CCE------EEEEcCCCceeeeeEEcC-CC-
Confidence            8 55555544433333333333     1 4567778888999999988 542      333333444455555543 44 


Q ss_pred             EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeec-CCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEE
Q 010784          273 LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKC-HESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSF  351 (501)
Q Consensus       273 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v  351 (501)
                      .++.++.++.|..+|.. ++.......     .......+.. ....+++++ +.+..+| .+++...........+.++
T Consensus       149 ~l~vgt~~~~l~~~d~~-g~~~~~~~~-----~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~  220 (330)
T 3hxj_A          149 TIYVGSNDNYLYAINPD-GTEKWRFKT-----NDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRP  220 (330)
T ss_dssp             CEEEECTTSEEEEECTT-SCEEEEEEC-----SSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCC
T ss_pred             EEEEEcCCCEEEEECCC-CCEeEEEec-----CCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceece
Confidence            46678888999999988 654332221     1222333444 345567777 8999999 7777777766666678888


Q ss_pred             EEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccc
Q 010784          352 SIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       352 ~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                      ...++|.+.+...++++..+|. +++..      ..+......+..+...++ .+.++ +.+|.|..+|. +++.+..+.
T Consensus       221 ~~~~~g~l~v~t~~~gl~~~~~-~g~~~------~~~~~~~~~~~~~~~~~~g~l~v~-t~~ggl~~~d~-~g~~~~~~~  291 (330)
T 3hxj_A          221 AISEDGTIYVTSLDGHLYAINP-DGTEK------WRFKTGKRIESSPVIGNTDTIYFG-SYDGHLYAINP-DGTEKWNFE  291 (330)
T ss_dssp             EECTTSCEEEEETTTEEEEECT-TSCEE------EEEECSSCCCSCCEECTTSCEEEE-CTTCEEEEECT-TSCEEEEEE
T ss_pred             EECCCCeEEEEcCCCeEEEECC-CCCEe------EEeeCCCCccccceEcCCCeEEEe-cCCCCEEEECC-CCcEEEEEE
Confidence            8888887766655566888874 33322      333333333445566666 66655 57888999996 677666653


Q ss_pred             cCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          431 CNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       431 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      .     ....+.++...++|++.+ ++  .+|.+++.....
T Consensus       292 ~-----~~~~~~~~~~d~~g~l~~-gt--~~G~~~~~~~~~  324 (330)
T 3hxj_A          292 T-----GSWIIATPVIDENGTIYF-GT--RNGKFYALFNLE  324 (330)
T ss_dssp             C-----SSCCCSCCEECTTCCEEE-EC--TTSCEEEEEC--
T ss_pred             c-----CCccccceEEcCCCEEEE-Ec--CCCeEEEEeccc
Confidence            2     244566777778887655 55  568888876554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.26  E-value=1.3e-08  Score=93.17  Aligned_cols=225  Identities=12%  Similarity=0.033  Sum_probs=138.5

Q ss_pred             eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcE
Q 010784          156 ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATV  234 (501)
Q Consensus       156 V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i  234 (501)
                      ..+..|+|+            ++.++++...++.|..|| .+.....+. ....+.++.|.    ++++++++. .+ .|
T Consensus        51 ~egp~~~~~------------~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~----~dg~l~v~~-~~-gl  111 (326)
T 2ghs_A           51 GEGPTFDPA------------SGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKI----SDSKQLIAS-DD-GL  111 (326)
T ss_dssp             EEEEEEETT------------TTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEE----ETTEEEEEE-TT-EE
T ss_pred             CcCCeEeCC------------CCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEe----CCCeEEEEE-CC-CE
Confidence            456788883            356777777789999998 433333333 34678999986    677777654 44 49


Q ss_pred             EEEeccCCCccccccceeecc-C-CCCceeEEEEeecCCeEEEEEeC------CCeEEEEECCCCccccceecccceecC
Q 010784          235 RLWSLSSSGKRGQQALKATLY-G-HEKPIKLMSVAGHKSFLLVTISK------DSKVRVWDTSTSSAVRSSCCVGMTSVP  306 (501)
Q Consensus       235 ~iwd~~~~~~~~~~~~~~~~~-~-~~~~v~~l~~~~~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~~~  306 (501)
                      .+||..++..    ..+.... . ....+..+.+++ +++++++...      .+.|..++  +++.             
T Consensus       112 ~~~d~~~g~~----~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-------------  171 (326)
T 2ghs_A          112 FLRDTATGVL----TLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKV-------------  171 (326)
T ss_dssp             EEEETTTCCE----EEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEE-------------
T ss_pred             EEEECCCCcE----EEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcE-------------
Confidence            9999877652    1111111 1 123578889987 5665554432      13344444  2211             


Q ss_pred             CCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE-cCCc-EEEEecC--CC-CCCCC
Q 010784          307 GVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG-GIGK-AMTWDIR--RS-QDAVK  381 (501)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~d~-i~iwd~~--~~-~~~~~  381 (501)
                                                      ..+..+......++|+|+++.++.+ +.++ |.+||+.  ++ +.. .
T Consensus       172 --------------------------------~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~-~  218 (326)
T 2ghs_A          172 --------------------------------TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-K  218 (326)
T ss_dssp             --------------------------------EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-C
T ss_pred             --------------------------------EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc-C
Confidence                                            0111112345789999999866544 4455 9999986  44 211 0


Q ss_pred             CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEee-ccccEEEEeec
Q 010784          382 PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMA-VSGCRIVTASY  458 (501)
Q Consensus       382 ~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~s~~~  458 (501)
                      ...+..+......+..++++++ .++++...++.|.+||. +++.+..+.     .+...+.+++|+ ++++.|+.++.
T Consensus       219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-----~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-----VPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-----CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-----CCCCCcEEEEEecCCCCEEEEEec
Confidence            1112223333455778999998 77777656788999998 677776663     234568999998 89887765553

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.25  E-value=9.5e-11  Score=108.14  Aligned_cols=182  Identities=9%  Similarity=0.054  Sum_probs=131.3

Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc-----eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS-----SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                      ++..+++++ ...++++|+.++ +.+|++........     .........+. +..+.+++..++++.++.+++||+++
T Consensus        39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l~v~dv~s  115 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNALYSLDLEE  115 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEEEEEESSS
T ss_pred             cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcEEEEEchh
Confidence            688899997 666888888875 66698765431000     11112224455 88888877778888788999999998


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCC
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDL  413 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg  413 (501)
                      .........|...+.++.+.+..  +++++.++ |.+||+..+...          .+...|++++|+|+.+ +.|..||
T Consensus       116 l~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~----------~~~~~Vs~v~WSpkG~-~vg~~dg  182 (388)
T 1xip_A          116 LSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK----------QLAQNVTSFDVTNSQL-AVLLKDR  182 (388)
T ss_dssp             TTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE----------EEEESEEEEEECSSEE-EEEETTS
T ss_pred             hhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc----------cccCCceEEEEcCCce-EEEEcCC
Confidence            88777777778888888877653  66677777 999999976532          2567899999999973 4456899


Q ss_pred             cEEEEeCCCccc--ccccccC----CCCCCCcceeeeEeeccccEEEEee
Q 010784          414 RINIWETDTGML--ANSLLCN----YPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       414 ~i~iwd~~~~~~--~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      ++++|+...++.  ..++...    ...+|...|.++.|.+++.++++=+
T Consensus       183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            999999877664  4455221    1123578899999999999998743

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.24  E-value=2e-09  Score=100.77  Aligned_cols=271  Identities=11%  Similarity=0.013  Sum_probs=167.9

Q ss_pred             cCcEEEEeeC-C----CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee----------CCCcEEEEec
Q 010784          177 TENVLVTSSC-D----HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG----------EDATVRLWSL  239 (501)
Q Consensus       177 ~~~~l~s~~~-d----g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~----------~dg~i~iwd~  239 (501)
                      +++.++.... +    +.|.+.|  +++.+..+..-..+  .+.++    +++++++.+.          .++.|.++|.
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~S----pDgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAA----EDGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEEC----TTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEEC----CCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            5555555443 2    6999999  77788777655555  78987    8999888876          3678999999


Q ss_pred             cCCCccccccceeeccCC-------CCceeEEEEeecCCeEEEEEeC--CCeEEEEECCCCccccceecccceecCCCce
Q 010784          240 SSSGKRGQQALKATLYGH-------EKPIKLMSVAGHKSFLLVTISK--DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV  310 (501)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  310 (501)
                      .+.+.      +..+.-.       ......+.++| ++++++.+..  ++.|.+.|+.+.+.+..+..      .+. .
T Consensus       157 ~t~~v------v~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v------~g~-~  222 (426)
T 3c75_H          157 VTFLP------IADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV------PDC-Y  222 (426)
T ss_dssp             TTCCE------EEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC------CSE-E
T ss_pred             CCCcE------EEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEc------CCc-e
Confidence            98763      4333211       12335678998 6777777664  57899999999876554332      111 1


Q ss_pred             eeecCC-CeEEEE-eCCcEEEEEcCCCceEee----eccCCCcE-EEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784          311 DMKCHE-SMLYIA-SGSSVVTIDLRTMQKVMT----PAICKPIL-HSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKP  382 (501)
Q Consensus       311 ~~~~~~-~~~~~~-~~~~i~~~d~~~~~~~~~----~~~~~~~v-~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~  382 (501)
                      .+.... ...+.. .++.+.+.+..+++....    +.....++ ..+.+.+++..++..+.++ +.+.|........ .
T Consensus       223 ~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v-~  301 (426)
T 3c75_H          223 HIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF-R  301 (426)
T ss_dssp             EEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE-C
T ss_pred             eeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE-e
Confidence            111111 222222 234666666654444321    11112221 2356788877666666666 9999986543210 0


Q ss_pred             CCccc-------ccCcccCeEEEEecCC--eEEEEec---------CCCcEEEEeCCCcccccccccCCCCCCCcceeee
Q 010784          383 QPMAE-------LDGHVGSVTQLHMDPY--KIVTGGR---------DDLRINIWETDTGMLANSLLCNYPEEADISTGCS  444 (501)
Q Consensus       383 ~~~~~-------~~~h~~~v~~l~~~~~--~~l~~gs---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  444 (501)
                      ..+..       ..........++++|+  +++++..         .++.|.+.|..+.+.+.++..      ......+
T Consensus       302 ~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v------g~~P~gi  375 (426)
T 3c75_H          302 APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL------GHEIDSI  375 (426)
T ss_dssp             CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEE
T ss_pred             eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC------CCCcCeE
Confidence            00000       0001122233678887  5565532         135799999999999999853      2247889


Q ss_pred             Eeecccc-EEEEeecCCCceEEEeeccCCccc
Q 010784          445 AMAVSGC-RIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       445 ~~s~~g~-~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      .|+|||+ +++++.. .++.|.++|..+.+..
T Consensus       376 a~spDg~~~lyv~n~-~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          376 NVSQDAEPLLYALSA-GTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EECCSSSCEEEEEET-TTTEEEEEETTTCCEE
T ss_pred             EEccCCCEEEEEEcC-CCCeEEEEECCCCCEE
Confidence            9999999 8888874 4799999999887753

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=2.6e-10  Score=105.51  Aligned_cols=269  Identities=9%  Similarity=-0.033  Sum_probs=162.9

Q ss_pred             CCCceEEeeCCcEEEeecCC--eeeEEEEecccccccc------eecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784          111 KPHDHILLDNNDIFSTQGSS--IQNIKIDNFLSESYYR------ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV  182 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~--d~~i~vw~~~~~~~~~------~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~  182 (501)
                      ..++.++++++|+++++...  ++.++||.+.++ +..      ....+|-..+..+++.+             ++++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~~~~~~~~~~p~gv~~d~-------------~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQSGNAIITFDTVLGIKSDG-------------NGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEEESCCCCSSCCCCCSCEEEEEECS-------------SSEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-CeecCCCcccCcccceeEeeEEEEcC-------------CCcEEE
Confidence            56899999999999888542  233556655433 322      11234567899999988             777766


Q ss_pred             EeeC-----CCceEEec--CCceeeeccC------CCCceEEEEeeecCCCC-CCEEEEee---CCCcEEEEeccCCCcc
Q 010784          183 TSSC-----DHSIRLWW--KGSCQRCFKG------HNGPVSTLSDKLLGDGS-GKILASGG---EDATVRLWSLSSSGKR  245 (501)
Q Consensus       183 s~~~-----dg~i~vwd--~~~~~~~~~~------h~~~v~~l~~s~~~~~~-~~~l~sg~---~dg~i~iwd~~~~~~~  245 (501)
                      +-..     ++.|.+||  +++.+..+..      +...+..+++.    ++ +..+++..   .++.|.+||+.++.  
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd----~~~g~~yvtd~~~~~~~~i~v~d~~~g~--  156 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVD----LIHNFVYISDPAPDDKAALIRVDLQTGL--  156 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEE----TTTTEEEEEECCSGGGCEEEEEETTTCC--
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEe----cCCCEEEEEcCccCCCCeEEEEECCCCC--
Confidence            5543     57899999  5665555432      22356788885    44 44445544   67899999998765  


Q ss_pred             ccccceeeccCCCCcee-EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784          246 GQQALKATLYGHEKPIK-LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       246 ~~~~~~~~~~~~~~~v~-~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (501)
                          ....+.+|..... ...+.+ ++..+.+.+.++.++.|.                                     
T Consensus       157 ----~~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~-------------------------------------  194 (343)
T 2qe8_A          157 ----AARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH-------------------------------------  194 (343)
T ss_dssp             ----EEEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC-------------------------------------
T ss_pred             ----EEEEecCCCcccccccceeE-CCEEEEeccCCCceecee-------------------------------------
Confidence                2444444322110 023333 455566666666654432                                     


Q ss_pred             CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCC--CCCCCCCcc--cccCcccCeEEE
Q 010784          325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQ--DAVKPQPMA--ELDGHVGSVTQL  398 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~--~~~~~~~~~--~~~~h~~~v~~l  398 (501)
                                           ..+..++++|+++.|+.+...+  +..++.....  .....+...  ...++.+....+
T Consensus       195 ---------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi  253 (343)
T 2qe8_A          195 ---------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI  253 (343)
T ss_dssp             ---------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred             ---------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence                                 1246799999998777776443  6555542110  000000001  111234456789


Q ss_pred             EecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          399 HMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      +++++ .++++...++.|.+||..+++......    .........++|.++|+++++.+  ..+.+.+|.
T Consensus       254 a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~~~~~p~~va~~~~g~l~v~~~--~~~~~~~f~  318 (343)
T 2qe8_A          254 SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DEKLSWTDSFNFGSDGYLYFDCN--QLHHSAPLN  318 (343)
T ss_dssp             EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CGGGSCEEEEEECTTSCEEEEEC--CGGGSGGGB
T ss_pred             EECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CCceecCCeeEECCCCcEEEEeC--ccccccccc
Confidence            99999 888888889999999985565332221    11234578999999998888876  334444443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.24  E-value=8.9e-10  Score=103.14  Aligned_cols=259  Identities=6%  Similarity=-0.074  Sum_probs=167.1

Q ss_pred             eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee----------CCCceEEec--CCcee
Q 010784          132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS----------CDHSIRLWW--KGSCQ  199 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd--~~~~~  199 (501)
                      +.|.+.|..+. +.+.++.--..+  .++++|             |+++++.+.          .++.|.++|  +++.+
T Consensus        99 ~~VsVID~~t~-~vv~~I~vG~~P--gia~Sp-------------Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv  162 (426)
T 3c75_H           99 TQQFVIDGSTG-RILGMTDGGFLP--HPVAAE-------------DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI  162 (426)
T ss_dssp             EEEEEEETTTT-EEEEEEEECSSC--EEEECT-------------TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             CeEEEEECCCC-EEEEEEECCCCC--ceEECC-------------CCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence            89999999985 777777654555  799999             788777775          467899999  66666


Q ss_pred             eeccCC-------CCceEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784          200 RCFKGH-------NGPVSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK  270 (501)
Q Consensus       200 ~~~~~h-------~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  270 (501)
                      ..+.-.       ...-..+.|+    ++|++++.+..  ++.|.+.|+.+.+.      +..+....    +....|..
T Consensus       163 ~~I~v~g~~r~~~g~~P~~~~~s----pDGk~lyV~n~~~~~~VsVID~~t~kv------v~~I~v~g----~~~~~p~g  228 (426)
T 3c75_H          163 ADIELPDAPRFLVGTYQWMNALT----PDNKNLLFYQFSPAPAVGVVDLEGKTF------DRMLDVPD----CYHIFPAS  228 (426)
T ss_dssp             EEEEETTCCCCCBSCCGGGSEEC----TTSSEEEEEECSSSCEEEEEETTTTEE------EEEEECCS----EEEEEEEE
T ss_pred             EEEECCCccccccCCCcceEEEc----CCCCEEEEEecCCCCeEEEEECCCCeE------EEEEEcCC----ceeeccCC
Confidence            655321       1233467776    89999998874  57899999998763      44444211    12344444


Q ss_pred             CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc----eeeecCCCeEEEEe-CCcEEEEEcCCCceE--eeecc
Q 010784          271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP----VDMKCHESMLYIAS-GSSVVTIDLRTMQKV--MTPAI  343 (501)
Q Consensus       271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~--~~~~~  343 (501)
                      ...+++.+.||.+.+.+..+++......  ........+    ..+...+..+++.. .+.+.+.|+......  ..+..
T Consensus       229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~--~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~  306 (426)
T 3c75_H          229 PTVFYMNCRDGSLARVDFADGETKVTNT--EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA  306 (426)
T ss_dssp             TTEEEEEETTSSEEEEECCTTCCEEEEC--CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred             CcEEEEEcCCCCEEEEECCCCcEEEEee--eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence            5677788889999988986554432110  111111111    11233444555444 457888998654422  11110


Q ss_pred             ----------CCCcEEEEEEcCCCcEEEEEcC----------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784          344 ----------CKPILHSFSIMPSKSLICTGGI----------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP  402 (501)
Q Consensus       344 ----------~~~~v~~v~~~~~~~~l~~~~~----------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  402 (501)
                                .......++++|++..+++...          ++ |.++|..+.+.+      .++.. ......+.|+|
T Consensus       307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv------~~I~v-g~~P~gia~sp  379 (426)
T 3c75_H          307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI------NKIEL-GHEIDSINVSQ  379 (426)
T ss_dssp             SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE------EEEEE-EEEECEEEECC
T ss_pred             ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE------EEEEC-CCCcCeEEEcc
Confidence                      0111123688999776665531          34 999999997654      55543 33588999999


Q ss_pred             C-e-EEEEec-CCCcEEEEeCCCccccccc
Q 010784          403 Y-K-IVTGGR-DDLRINIWETDTGMLANSL  429 (501)
Q Consensus       403 ~-~-~l~~gs-~dg~i~iwd~~~~~~~~~~  429 (501)
                      + + ++++.. .++.|.++|+.+++.+.++
T Consensus       380 Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          380 DAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            9 6 666655 5999999999999999886

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.16  E-value=7.5e-09  Score=93.91  Aligned_cols=233  Identities=9%  Similarity=-0.015  Sum_probs=144.2

Q ss_pred             CceeeeccCCCCceEEEEeeecCCCCCC-EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEE
Q 010784          196 GSCQRCFKGHNGPVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLL  274 (501)
Q Consensus       196 ~~~~~~~~~h~~~v~~l~~s~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  274 (501)
                      +..+..+...........|+    ++++ +++++..++.|..|+.. +.       ...+..+...+..+++.+ +++++
T Consensus        34 ~~~~~~l~~~~~~~egp~~~----~~g~~l~~~d~~~~~i~~~~~~-g~-------~~~~~~~~~~~~gl~~d~-dG~l~  100 (305)
T 3dr2_A           34 DARLLTLYDQATWSEGPAWW----EAQRTLVWSDLVGRRVLGWRED-GT-------VDVLLDATAFTNGNAVDA-QQRLV  100 (305)
T ss_dssp             TCCCEEEECCCSSEEEEEEE----GGGTEEEEEETTTTEEEEEETT-SC-------EEEEEESCSCEEEEEECT-TSCEE
T ss_pred             CCceEEEecCCcCccCCeEe----CCCCEEEEEECCCCEEEEEeCC-CC-------EEEEeCCCCccceeeECC-CCCEE
Confidence            34444555555566788886    7777 67777788999999873 33       234444566788999997 67766


Q ss_pred             EEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe--------------------CCcEEEEEcCC
Q 010784          275 VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS--------------------GSSVVTIDLRT  334 (501)
Q Consensus       275 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~i~~~d~~~  334 (501)
                      ++...++.|.+|+.. ++.......... .....+..+.+++++.+..+                    .+.|..+|..+
T Consensus       101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~  178 (305)
T 3dr2_A          101 HCEHGRRAITRSDAD-GQAHLLVGRYAG-KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG  178 (305)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEECEETT-EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred             EEECCCCEEEEECCC-CCEEEEEeccCC-CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence            665566889999986 432111100000 11122344555555444442                    13577777766


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCC------c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEE
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIG------K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIV  406 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d------~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l  406 (501)
                      ++.....  .......++|+|+++.|+.+...      . |.+|++.... +........  ...+....++++++ ++.
T Consensus       179 g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~--~~~~~pdgi~~d~~G~lw  253 (305)
T 3dr2_A          179 SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFAS--VPDGLPDGFCVDRGGWLW  253 (305)
T ss_dssp             CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEEC--CSSSCCCSEEECTTSCEE
T ss_pred             CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEE--CCCCCCCeEEECCCCCEE
Confidence            6544333  34556889999999877666543      5 9999987543 100000111  12334567889998 766


Q ss_pred             EEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          407 TGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       407 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      ++. .+ .|.+|+. +++.+..+..     +. .+..++|+++++.|..++
T Consensus       254 v~~-~~-gv~~~~~-~g~~~~~~~~-----~~-~~~~~~f~~d~~~L~it~  295 (305)
T 3dr2_A          254 SSS-GT-GVCVFDS-DGQLLGHIPT-----PG-TASNCTFDQAQQRLFITG  295 (305)
T ss_dssp             ECC-SS-EEEEECT-TSCEEEEEEC-----SS-CCCEEEECTTSCEEEEEE
T ss_pred             Eec-CC-cEEEECC-CCCEEEEEEC-----CC-ceeEEEEeCCCCEEEEEc
Confidence            664 44 4999998 5777777642     12 478899999998888877

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.16  E-value=1.9e-09  Score=99.23  Aligned_cols=256  Identities=8%  Similarity=-0.093  Sum_probs=163.6

Q ss_pred             eEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee----------CCCceEEec--CCceee
Q 010784          133 NIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS----------CDHSIRLWW--KGSCQR  200 (501)
Q Consensus       133 ~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd--~~~~~~  200 (501)
                      .+.+.|..++ +.+.++..-..+  .+.++|             |+++++.+.          .+++|.+||  +++.+.
T Consensus        47 ~vsvID~~t~-~v~~~i~vG~~P--~i~~sp-------------Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           47 ENWVSCAGCG-VTLGHSLGAFLS--LAVAGH-------------SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEEETTTT-EEEEEEEECTTC--EEEECT-------------TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             eEEEEECCCC-eEEEEEeCCCCC--ceEECC-------------CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            8889999985 777777655555  799999             788888776          478999999  777777


Q ss_pred             eccCC-------CCceEEEEeeecCCCCCCEEEEeeC--CCcEEE--EeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784          201 CFKGH-------NGPVSTLSDKLLGDGSGKILASGGE--DATVRL--WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH  269 (501)
Q Consensus       201 ~~~~h-------~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  269 (501)
                      ++..+       ...-..+.|+    ++|++++++..  +..|.+  +|..+ ..     .+ ...   +.   +.+.|.
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~S----pDGk~lyVan~~~~~~v~V~~iD~~t-v~-----~i-~v~---~~---~~~~p~  173 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNC----ASSACLLFFLFGSSAAAGLSVPGASD-DQ-----LT-KSA---SC---FHIHPG  173 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEEC----TTSSCEEEEECSSSCEEEEEETTTEE-EE-----EE-ECS---SC---CCCEEE
T ss_pred             EEECCCccccccCCCcceEEEc----CCCCEEEEEccCCCCeEEEEEEchhh-ce-----EE-ECC---Cc---eEEccC
Confidence            76533       1234577886    89999998875  357888  88876 11     11 111   11   123344


Q ss_pred             CCeEEEEEeCCCeEEEEECCC-----CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc--eEeeec
Q 010784          270 KSFLLVTISKDSKVRVWDTST-----SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ--KVMTPA  342 (501)
Q Consensus       270 ~~~~l~s~s~dg~v~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~  342 (501)
                      ....+++.+.||.+.+.|+.+     ++......  ........+.. ...+...+.++.+.+.+.|..+..  .+..+.
T Consensus       174 g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~~i~vg~~P~~-~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~  250 (368)
T 1mda_H          174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT--GAQNCSSQAAQ-ANYPGMLVWAVASSILQGDIPAAGATMKAAID  250 (368)
T ss_dssp             ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC--TTSCBCSCCEE-ETTTTEEEECBSSCCEEEECCSSCCEEECCCC
T ss_pred             CCeEEEEEcCCCCEEEEECccccccCCeEEEEee--eeeeCCCCccc-cccCCEEEEEcCCEEEEEECCCCcceEEEEEE
Confidence            455667777899999999887     43221100  11111122222 333333333333788889986532  222221


Q ss_pred             c-------C---CCcEEEEEEcCCCcEEEEEcC----------CcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784          343 I-------C---KPILHSFSIMPSKSLICTGGI----------GKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP  402 (501)
Q Consensus       343 ~-------~---~~~v~~v~~~~~~~~l~~~~~----------d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  402 (501)
                      .       +   ......++++|+++.++.+..          +++.++|+.+.+.+      ..+... .....++++|
T Consensus       251 ~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv------~~i~vg-~~p~gi~~s~  323 (368)
T 1mda_H          251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS------GPISNG-HDSDAIIAAQ  323 (368)
T ss_dssp             SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE------ECCEEE-EEECEEEECC
T ss_pred             eccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE------EEEECC-CCcceEEECC
Confidence            1       0   011112679999887776532          24779999997654      555542 3588999999


Q ss_pred             C--eEEEEec-CCCcEEEEeCCCccccccccc
Q 010784          403 Y--KIVTGGR-DDLRINIWETDTGMLANSLLC  431 (501)
Q Consensus       403 ~--~~l~~gs-~dg~i~iwd~~~~~~~~~~~~  431 (501)
                      +  +++++.. .++.|.++|+.+++.+.++..
T Consensus       324 Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          324 DGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence            8  4777766 599999999999999999854

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.16  E-value=3.7e-08  Score=90.23  Aligned_cols=223  Identities=8%  Similarity=-0.044  Sum_probs=136.8

Q ss_pred             CceEEeeCC-cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          113 HDHILLDNN-DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       113 i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      ....+|+++ +.++.++...+.|..|+..++ +. ..+. +...+.++++++             +|+++++. .+| |.
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-~~-~~~~-~~~~v~~i~~~~-------------dg~l~v~~-~~g-l~  112 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASG-RK-TVHA-LPFMGSALAKIS-------------DSKQLIAS-DDG-LF  112 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTT-EE-EEEE-CSSCEEEEEEEE-------------TTEEEEEE-TTE-EE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCC-cE-EEEE-CCCcceEEEEeC-------------CCeEEEEE-CCC-EE
Confidence            578899986 677777777899999998864 32 2222 346799999998             77777754 344 88


Q ss_pred             Eec--CCceeeeccCC-----CCceEEEEeeecCCCCCCEEEEeeCC----CcEEEEeccCCCccccccceeeccCCCCc
Q 010784          192 LWW--KGSCQRCFKGH-----NGPVSTLSDKLLGDGSGKILASGGED----ATVRLWSLSSSGKRGQQALKATLYGHEKP  260 (501)
Q Consensus       192 vwd--~~~~~~~~~~h-----~~~v~~l~~s~~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  260 (501)
                      +||  +++. ..+...     ...+.++++.    ++|+++++...+    +...+|.++++.       ...+..+...
T Consensus       113 ~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~d----~~G~l~v~~~~~~~~~~~~~l~~~~~g~-------~~~~~~~~~~  180 (326)
T 2ghs_A          113 LRDTATGVL-TLHAELESDLPGNRSNDGRMH----PSGALWIGTMGRKAETGAGSIYHVAKGK-------VTKLFADISI  180 (326)
T ss_dssp             EEETTTCCE-EEEECSSTTCTTEEEEEEEEC----TTSCEEEEEEETTCCTTCEEEEEEETTE-------EEEEEEEESS
T ss_pred             EEECCCCcE-EEEeeCCCCCCCCCCCCEEEC----CCCCEEEEeCCCcCCCCceEEEEEeCCc-------EEEeeCCCcc
Confidence            898  3433 222211     2357888885    788876654321    233444444332       2222222334


Q ss_pred             eeEEEEeecCCe-EEEEEeCCCeEEEEECC--CC-ccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          261 IKLMSVAGHKSF-LLVTISKDSKVRVWDTS--TS-SAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       261 v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      ...++|++ +++ ++++.+.++.|.+||+.  ++ +...                                       .+
T Consensus       181 ~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~---------------------------------------~~  220 (326)
T 2ghs_A          181 PNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGK---------------------------------------AE  220 (326)
T ss_dssp             EEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSC---------------------------------------CE
T ss_pred             cCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccC---------------------------------------ce
Confidence            67889997 555 44555667899999986  43 2100                                       00


Q ss_pred             eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec-CC--eEEEEecCC
Q 010784          337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD-PY--KIVTGGRDD  412 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~--~~l~~gs~d  412 (501)
                      ....+......+..++++++|+++++...++ |.+||. +++.      +..+..+...+++++|+ ++  .++++...+
T Consensus       221 ~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~------~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          221 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH------IARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE------EEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE------EEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            0111112234567899999998887776555 999998 4433      24555555679999998 76  455554444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.14  E-value=1.2e-08  Score=92.54  Aligned_cols=234  Identities=10%  Similarity=-0.016  Sum_probs=148.9

Q ss_pred             EEecCCCCceEEeeCCcE-EEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          106 FYSVAKPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      +.....-....+|+++|. ++.++..++.|..|+.. + + ...+..+...+..+++.+             +|+++++.
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~-~~~~~~~~~~~~gl~~d~-------------dG~l~v~~  103 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-T-VDVLLDATAFTNGNAVDA-------------QQRLVHCE  103 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-C-EEEEEESCSCEEEEEECT-------------TSCEEEEE
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-C-EEEEeCCCCccceeeECC-------------CCCEEEEE
Confidence            333444467889999987 66777788899999874 2 3 345556677899999998             78877766


Q ss_pred             eCCCceEEec-CCceeeeccCC-----CCceEEEEeeecCCCCCCEEEE----eeC-------------CCcEEEEeccC
Q 010784          185 SCDHSIRLWW-KGSCQRCFKGH-----NGPVSTLSDKLLGDGSGKILAS----GGE-------------DATVRLWSLSS  241 (501)
Q Consensus       185 ~~dg~i~vwd-~~~~~~~~~~h-----~~~v~~l~~s~~~~~~~~~l~s----g~~-------------dg~i~iwd~~~  241 (501)
                      ..++.|.+|+ .++ ...+..+     ...+.++++.    ++|++.++    |..             .+.|..+|..+
T Consensus       104 ~~~~~v~~~~~~g~-~~~~~~~~~~~~~~~~~~i~~d----~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~  178 (305)
T 3dr2_A          104 HGRRAITRSDADGQ-AHLLVGRYAGKRLNSPNDLIVA----RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG  178 (305)
T ss_dssp             TTTTEEEEECTTSC-EEEEECEETTEECSCCCCEEEC----TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred             CCCCEEEEECCCCC-EEEEEeccCCCccCCCCCEEEC----CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence            6668899998 443 3222211     1345678885    88988886    432             24566677655


Q ss_pred             CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEECCCCccccceecccceecCCCceeeecC
Q 010784          242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH  315 (501)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (501)
                      +..       ..+. .......++|+| +++.|+.+...      +.|.+|++.... +........ ...+.+..+..+
T Consensus       179 g~~-------~~~~-~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~-~~~~~pdgi~~d  247 (305)
T 3dr2_A          179 SPL-------QRMA-DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFAS-VPDGLPDGFCVD  247 (305)
T ss_dssp             CCC-------EEEE-EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEEC-CSSSCCCSEEEC
T ss_pred             CcE-------EEEe-cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEE-CCCCCCCeEEEC
Confidence            542       1122 334567899998 66656555554      789999987653 111111100 123334445554


Q ss_pred             CCe-EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEec
Q 010784          316 ESM-LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDI  373 (501)
Q Consensus       316 ~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~  373 (501)
                      +++ +++++.+.|.+|+. .++.+..+..+. .+.+++|+++++.|..++.+++..+++
T Consensus       248 ~~G~lwv~~~~gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~~~  304 (305)
T 3dr2_A          248 RGGWLWSSSGTGVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWMLPL  304 (305)
T ss_dssp             TTSCEEECCSSEEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEEEC
T ss_pred             CCCCEEEecCCcEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEEEC
Confidence            433 55555568999998 466666666544 588899999988888887777555443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.13  E-value=6e-09  Score=104.99  Aligned_cols=289  Identities=11%  Similarity=0.040  Sum_probs=169.3

Q ss_pred             ecCCeeeEEEEecccccccceecccCCcc-----------eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-
Q 010784          127 QGSSIQNIKIDNFLSESYYRATLSDHKAR-----------ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-  194 (501)
Q Consensus       127 ~g~~d~~i~vw~~~~~~~~~~~~~~h~~~-----------V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-  194 (501)
                      .++.++.+.-+|..+| +.+..+......           ...+++               .+..++.++.|+.|..+| 
T Consensus        82 v~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~a~---------------~~~~v~v~~~dg~l~alD~  145 (677)
T 1kb0_A           82 VSASWSVVHAIDTRTG-NRIWTYDPQIDRSTGFKGCCDVVNRGVAL---------------WKGKVYVGAWDGRLIALDA  145 (677)
T ss_dssp             EECGGGCEEEEETTTT-EEEEEECCCCCGGGGGGSSSCSCCCCCEE---------------ETTEEEEECTTSEEEEEET
T ss_pred             EECCCCeEEEEECCCC-cEEEEEcCCCCccccccccccCCCCCceE---------------ECCEEEEEcCCCEEEEEEC
Confidence            3444788899999886 555544332210           011222               456788888899999999 


Q ss_pred             -CCceeeeccCC-C----CceEE-EEeeecCCCCCCEEEEeeC------CCcEEEEeccCCCccccccceeeccCC----
Q 010784          195 -KGSCQRCFKGH-N----GPVST-LSDKLLGDGSGKILASGGE------DATVRLWSLSSSGKRGQQALKATLYGH----  257 (501)
Q Consensus       195 -~~~~~~~~~~h-~----~~v~~-l~~s~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~----  257 (501)
                       +|+.+-.+..+ .    ..+.+ ...      .+..++.++.      +|.|+.+|..+++.      +-.+...    
T Consensus       146 ~tG~~~W~~~~~~~~~~~~~~~~~p~v------~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~------~W~~~~~~~~~  213 (677)
T 1kb0_A          146 ATGKEVWHQNTFEGQKGSLTITGAPRV------FKGKVIIGNGGAEYGVRGYITAYDAETGER------KWRWFSVPGDP  213 (677)
T ss_dssp             TTCCEEEEEETTTTCCSSCBCCSCCEE------ETTEEEECCBCTTTCCBCEEEEEETTTCCE------EEEEESSCCCT
T ss_pred             CCCCEEeeecCCcCcCcCcccccCcEE------ECCEEEEEecccccCCCCEEEEEECCCCcE------EEEeccCCCCc
Confidence             78877666543 1    12211 111      1335555543      78999999999875      2222111    


Q ss_pred             ----------------------------CCceeEEEEeecCCeEEEEEeCCC-------------------eEEEEECCC
Q 010784          258 ----------------------------EKPIKLMSVAGHKSFLLVTISKDS-------------------KVRVWDTST  290 (501)
Q Consensus       258 ----------------------------~~~v~~l~~~~~~~~~l~s~s~dg-------------------~v~vwd~~~  290 (501)
                                                  ......+++.+ +...++.++.++                   .|..+|.++
T Consensus       214 ~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T  292 (677)
T 1kb0_A          214 SKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT  292 (677)
T ss_dssp             TSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred             cccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC
Confidence                                        11113467776 455677776654                   599999999


Q ss_pred             Cccccceecccce----ecCCCceeeec--CCC--eEEEEe--CCcEEEEEcCCCceEeeeccCC-----------CcE-
Q 010784          291 SSAVRSSCCVGMT----SVPGVPVDMKC--HES--MLYIAS--GSSVVTIDLRTMQKVMTPAICK-----------PIL-  348 (501)
Q Consensus       291 ~~~~~~~~~~~~~----~~~~~~~~~~~--~~~--~~~~~~--~~~i~~~d~~~~~~~~~~~~~~-----------~~v-  348 (501)
                      ++.+-........    .....+.....  +..  ..++..  .+.++++|.++++.+.......           ..+ 
T Consensus       293 G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~  372 (677)
T 1kb0_A          293 GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIG  372 (677)
T ss_dssp             CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEE
T ss_pred             CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceee
Confidence            9876554432221    01112222221  221  222222  2489999999999886554211           111 


Q ss_pred             -----------------------EEEEEcCCCcEEEEEcC----------------------------------------
Q 010784          349 -----------------------HSFSIMPSKSLICTGGI----------------------------------------  365 (501)
Q Consensus       349 -----------------------~~v~~~~~~~~l~~~~~----------------------------------------  365 (501)
                                             ..++++|++.++++...                                        
T Consensus       373 ~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~  452 (677)
T 1kb0_A          373 IAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPK  452 (677)
T ss_dssp             CGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCC
T ss_pred             ccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCC
Confidence                                   14688898777776532                                        


Q ss_pred             ---Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784          366 ---GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIS  440 (501)
Q Consensus       366 ---d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  440 (501)
                         .+ |..||+.+++.+      ..+. +..++....+... .+++.++.||.+++||..+++.+.++....    ...
T Consensus       453 ~~~~g~l~A~D~~tG~~~------W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~----~~~  521 (677)
T 1kb0_A          453 SKPFGRLLAWDPVAQKAA------WSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT----GVV  521 (677)
T ss_dssp             SCCEEEEEEEETTTTEEE------EEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----CCC
T ss_pred             CCCccEEEEEeCCCCcEE------eecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC----Ccc
Confidence               15 999999987654      3332 2223333334433 455556899999999999999999986432    223


Q ss_pred             eeeeEeeccccEEEE
Q 010784          441 TGCSAMAVSGCRIVT  455 (501)
Q Consensus       441 v~~~~~s~~g~~l~s  455 (501)
                      ..-+.|..+|+.+++
T Consensus       522 ~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          522 AAPSTYMVDGRQYVS  536 (677)
T ss_dssp             SCCEEEEETTEEEEE
T ss_pred             cCCEEEEeCCEEEEE
Confidence            344667788875544

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.13  E-value=2.7e-11  Score=103.67  Aligned_cols=49  Identities=12%  Similarity=0.219  Sum_probs=47.0

Q ss_pred             ccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhh
Q 010784           19 AIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQ   67 (501)
Q Consensus        19 ~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~   67 (501)
                      .|..||.||+++||+||+|+||+++++|||+||.+++|+.|||.++.+.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd   52 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD   52 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence            5788999999999999999999999999999999999999999999876

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.13  E-value=7e-09  Score=104.71  Aligned_cols=295  Identities=13%  Similarity=0.065  Sum_probs=166.5

Q ss_pred             EeecCCeeeEEEEecccccccceecccCCcc----------e-eEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEe
Q 010784          125 STQGSSIQNIKIDNFLSESYYRATLSDHKAR----------I-TCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW  193 (501)
Q Consensus       125 ~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~----------V-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw  193 (501)
                      +..++.++.+.-+|..+| +.+..+..+...          + ..+..               .+..++.++.|+.|..+
T Consensus        73 vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~g~v~v~~~dg~l~Al  136 (689)
T 1yiq_A           73 MYTTGPFSVVYALDARDG-RLIWKYDPQSDRHRAGEACCDAVNRGVAV---------------WKGKVYVGVLDGRLEAI  136 (689)
T ss_dssp             EEEECGGGCEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE---------------ETTEEEEECTTSEEEEE
T ss_pred             EEEEcCCCeEEEEECCCC-ceeEEEcCCCCccccccccccCCCCccEE---------------ECCEEEEEccCCEEEEE
Confidence            334455788999999886 555555433221          0 11111               45678888899999999


Q ss_pred             c--CCceeeeccCC--CCceEEEEeeecCCCCCCEEEEee------CCCcEEEEeccCCCccccccceeeccC-------
Q 010784          194 W--KGSCQRCFKGH--NGPVSTLSDKLLGDGSGKILASGG------EDATVRLWSLSSSGKRGQQALKATLYG-------  256 (501)
Q Consensus       194 d--~~~~~~~~~~h--~~~v~~l~~s~~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~~~~-------  256 (501)
                      |  +|+.+-.+...  ......+..+|.- .++ .++.++      .+|.|..||..+++.      +-.+..       
T Consensus       137 Da~TG~~~W~~~~~~~~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~------~W~~~~~~~~p~~  208 (689)
T 1yiq_A          137 DAKTGQRAWSVDTRADHKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKE------AWRFYTVPGDPKL  208 (689)
T ss_dssp             ETTTCCEEEEEECCSCTTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCE------EEEEESSCCCTTS
T ss_pred             ECCCCCEeeeecCcCCCCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcE------EEEecccCCCccc
Confidence            9  78776554431  1110111111000 134 444443      378999999999875      222110       


Q ss_pred             ------------------------CCCceeEEEEeecCCeEEEEEeCCCe-------------------EEEEECCCCcc
Q 010784          257 ------------------------HEKPIKLMSVAGHKSFLLVTISKDSK-------------------VRVWDTSTSSA  293 (501)
Q Consensus       257 ------------------------~~~~v~~l~~~~~~~~~l~s~s~dg~-------------------v~vwd~~~~~~  293 (501)
                                              +......+++.+ +..+++.++.++.                   |..+|.++++.
T Consensus       209 ~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~  287 (689)
T 1yiq_A          209 PPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY  287 (689)
T ss_dssp             CCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE
T ss_pred             ccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce
Confidence                                    011112467776 4567888877764                   99999999987


Q ss_pred             ccceeccccee----cCCCce--eeecCCC---eEEEEe-CCcEEEEEcCCCceEeeeccCC------------------
Q 010784          294 VRSSCCVGMTS----VPGVPV--DMKCHES---MLYIAS-GSSVVTIDLRTMQKVMTPAICK------------------  345 (501)
Q Consensus       294 ~~~~~~~~~~~----~~~~~~--~~~~~~~---~~~~~~-~~~i~~~d~~~~~~~~~~~~~~------------------  345 (501)
                      +-.........    ....+.  .+.....   .++.+. .+.++++|.++++.+.......                  
T Consensus       288 ~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~  367 (689)
T 1yiq_A          288 VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDE  367 (689)
T ss_dssp             EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECH
T ss_pred             eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccch
Confidence            65544322110    111111  1111221   122222 2489999999998874322110                  


Q ss_pred             ----------C-----------cEEEEEEcCCCcEEEEEcC---------------------------------------
Q 010784          346 ----------P-----------ILHSFSIMPSKSLICTGGI---------------------------------------  365 (501)
Q Consensus       346 ----------~-----------~v~~v~~~~~~~~l~~~~~---------------------------------------  365 (501)
                                .           .-..++++|+..++++...                                       
T Consensus       368 ~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  447 (689)
T 1yiq_A          368 ENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLL  447 (689)
T ss_dssp             HHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHH
T ss_pred             hhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCC
Confidence                      0           0112678888777776521                                       


Q ss_pred             ------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCC
Q 010784          366 ------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEA  437 (501)
Q Consensus       366 ------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~  437 (501)
                            ++ |+.||+.+++.+      ..+..+. ++..-.+... .+++.|+.||.++.||.++|+.+.++....    
T Consensus       448 ~~~~~~~g~l~A~D~~tG~~~------W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~----  516 (689)
T 1yiq_A          448 EMAKSWSGKLIAWDPVKQQAA------WEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS----  516 (689)
T ss_dssp             HHHTTCEEEEEEEETTTTEEE------EEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----
T ss_pred             CCCCCcceeEEEEECCCCCeE------eEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC----
Confidence                  25 888999887654      3333222 2222233333 566667899999999999999998885322    


Q ss_pred             CcceeeeEeeccccEEEE
Q 010784          438 DISTGCSAMAVSGCRIVT  455 (501)
Q Consensus       438 ~~~v~~~~~s~~g~~l~s  455 (501)
                      .....-+.|..+|+..++
T Consensus       517 ~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          517 GVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             CCCSCCEEEEETTEEEEE
T ss_pred             CcccCceEEEECCEEEEE
Confidence            222344677889874443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.11  E-value=1e-08  Score=104.23  Aligned_cols=234  Identities=12%  Similarity=0.091  Sum_probs=143.2

Q ss_pred             CceEEeeCCcEEEe-----ecCCeeeEEEEecccccccceecccCCcc--eeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          113 HDHILLDNNDIFST-----QGSSIQNIKIDNFLSESYYRATLSDHKAR--ITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       113 i~~~~~~~~~~~~~-----~g~~d~~i~vw~~~~~~~~~~~~~~h~~~--V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      +..+++||||+++|     .|+....|+++|+.++ +.+..   +...  ...++|+ +             ++.|+.++
T Consensus       131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg-~~~~~---~~~~~k~~~~~Ws-D-------------g~~l~y~~  192 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK-QPLET---PLKDVKFSGISWL-G-------------NEGFFYSS  192 (693)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC-SEEEE---EEEEEESCCCEEE-T-------------TTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC-CCCcc---ccCCceeccEEEe-C-------------CCEEEEEE
Confidence            67789999999999     5677789999999986 33221   2222  2566777 4             56777776


Q ss_pred             CCCc-------------eEEec--CCc----eeeeccC-CCCceEEEEeeecCCCCCCEEEEeeC----CCcEEEEeccC
Q 010784          186 CDHS-------------IRLWW--KGS----CQRCFKG-HNGPVSTLSDKLLGDGSGKILASGGE----DATVRLWSLSS  241 (501)
Q Consensus       186 ~dg~-------------i~vwd--~~~----~~~~~~~-h~~~v~~l~~s~~~~~~~~~l~sg~~----dg~i~iwd~~~  241 (501)
                      .+..             |++|+  ++.    .+..... |...+..+.|+    ++|++|+....    +..|.++|+.+
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S----pDg~~l~~~~~~~~~~~~i~~~d~~~  268 (693)
T 3iuj_A          193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT----EDDRFLLISAANSTSGNRLYVKDLSQ  268 (693)
T ss_dssp             SSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC----TTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred             ecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc----CCCCEEEEEEccCCCCcEEEEEECCC
Confidence            6643             88887  222    2222333 44457788887    88988754432    35899999987


Q ss_pred             CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC---CeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784          242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD---SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM  318 (501)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (501)
                      +..     ....+..+....... +++.++.+++....+   +.|..+|+.++....                       
T Consensus       269 ~~~-----~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~-----------------------  319 (693)
T 3iuj_A          269 ENA-----PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH-----------------------  319 (693)
T ss_dssp             TTC-----CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-----------------------
T ss_pred             CCC-----ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-----------------------
Confidence            642     234455555555544 555456666665543   568888887653210                       


Q ss_pred             EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc---EEEEecCCCCCCCCCCCccccc-Cccc
Q 010784          319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK---AMTWDIRRSQDAVKPQPMAELD-GHVG  393 (501)
Q Consensus       319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~---i~iwd~~~~~~~~~~~~~~~~~-~h~~  393 (501)
                                         ...+..|...+.  .|+++++.|+... .++   |++||+..+..       ..+. ...+
T Consensus       320 -------------------~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-------~~l~~p~~~  371 (693)
T 3iuj_A          320 -------------------WRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-------REVALPGLG  371 (693)
T ss_dssp             -------------------CEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-------EEECCSSSS
T ss_pred             -------------------cEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-------EEeecCCCc
Confidence                               012223334443  7788887776655 342   88999875331       2222 2344


Q ss_pred             CeEEEEecCC--eEEEEecC---CCcEEEEeCCCccc
Q 010784          394 SVTQLHMDPY--KIVTGGRD---DLRINIWETDTGML  425 (501)
Q Consensus       394 ~v~~l~~~~~--~~l~~gs~---dg~i~iwd~~~~~~  425 (501)
                      .+..+.++++  .++.+.+.   -++|..||+.+++.
T Consensus       372 ~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          372 SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            5677777777  45544322   27899999987653

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.10  E-value=9.3e-11  Score=102.12  Aligned_cols=74  Identities=14%  Similarity=0.224  Sum_probs=58.8

Q ss_pred             CcccccccHHHHHHHHhcCChhhhH-HHHhhChhHHHHcCCchhHHHHHhhhcCccccCCC--CCcchhHHHHHHHHHH
Q 010784           17 TTAIADLNEDAVAHCALNLSLQDIS-NMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGS--LPTVRVREAYLARRIA   92 (501)
Q Consensus        17 ~~~~~~Lp~e~~~~i~~~L~~~~l~-~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   92 (501)
                      ...+..||+|++.+||+||++++|+ ++++|||+|+.+++++.+|+++|++.+.  .+...  .....|+..|+.+...
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~--~~~~~~~~~~~~Wk~~y~~~~~g  124 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGL--VPEGSADEERDHWQQFYFLSKRR  124 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTC--CCC-----CCSCHHHHHHHHHHC
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCc--ccccccCCCCCChhhhheheecc
Confidence            5578889999999999999999999 9999999999999999999999988732  11111  0234588888776443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.09  E-value=1.2e-11  Score=115.33  Aligned_cols=200  Identities=14%  Similarity=0.046  Sum_probs=108.0

Q ss_pred             cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784          177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      ++..+++++.||.|+.||  +|+.+..+..  +.+.+..+.    .++..+++++.||.|+.||..+++.      +...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~----~~g~~~v~~s~dg~l~a~d~~tG~~------~w~~   75 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH----VEEPAFLPDPNDGSLYTLGSKNNEG------LTKL   75 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC---------CCEEECTTTCCEEEC-----CC------SEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceE----cCCCEEEEeCCCCEEEEEECCCCce------eeee
Confidence            578999999999999999  7888777765  444444333    4667888888999999999988764      2222


Q ss_pred             cCCCC-cee-EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784          255 YGHEK-PIK-LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL  332 (501)
Q Consensus       255 ~~~~~-~v~-~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  332 (501)
                      ..+.. .+. ...+.  .+..+++++.|+.|+.||..+++.+...                                   
T Consensus        76 ~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~-----------------------------------  118 (369)
T 2hz6_A           76 PFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTL-----------------------------------  118 (369)
T ss_dssp             SCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------------------------
T ss_pred             eccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEe-----------------------------------
Confidence            22211 010 00111  2346778888999999999988643211                                   


Q ss_pred             CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC-----CeEE
Q 010784          333 RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-----YKIV  406 (501)
Q Consensus       333 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~~l  406 (501)
                               ..+.    ...++|++..+++++.++ |+.||.++++..      ..+..+.  .....+++     ..++
T Consensus       119 ---------~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~------W~~~~~~--~~~~~~~~~~~~~~~v~  177 (369)
T 2hz6_A          119 ---------SSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR------WNATYFD--YAASLPEDDVDYKMSHF  177 (369)
T ss_dssp             ---------------------------EEEEEEEEEEECCCSSSSSCC------CEEEEEE--ECCBCCCCCTTCCCCEE
T ss_pred             ---------cCCC----cccccccCCEEEEEecCCEEEEEECCCCCEE------EeEeccc--ccCccccCCccccceEE
Confidence                     1111    123455777888888777 999999998754      3332111  12233343     2444


Q ss_pred             EEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784          407 TGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR  452 (501)
Q Consensus       407 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  452 (501)
                      + ++.||.|+.||..+|+.+-++...     ...+....++++|..
T Consensus       178 ~-~~~dg~v~a~d~~tG~~~W~~~~~-----~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          178 V-SNGDGLVVTVDSESGDVLWIQNYA-----SPVVAFYVWQREGLR  217 (369)
T ss_dssp             E-EETSCEEEEECTTTCCEEEEEECS-----SCEEEEEECTTSSCE
T ss_pred             E-ECCCCEEEEEECCCCcEEEEecCC-----CceEEEEEecCCceE
Confidence            4 568999999999999988776421     112234455566643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.09  E-value=8.4e-08  Score=89.84  Aligned_cols=266  Identities=12%  Similarity=0.073  Sum_probs=155.3

Q ss_pred             cCcEEEEeeCCCceEEec--CCceeeeccCC---------CCceEE-EEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784          177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGH---------NGPVST-LSDKLLGDGSGKILASGGEDATVRLWSLSSSGK  244 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h---------~~~v~~-l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~  244 (501)
                      .+..++.++.++.|..+|  +++.+-.+...         ...+.+ +..      ++..++.++.++.|..+|..+++.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~v~~~~g~l~a~d~~tG~~  125 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV------SGGHVYIGSEKAQVYALNTSDGTV  125 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE------ETTEEEEEETTSEEEEEETTTCCE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE------eCCEEEEEcCCCEEEEEECCCCCE
Confidence            356777788889999998  67766444331         222322 232      456788888999999999998874


Q ss_pred             cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784          245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (501)
                            .................  + ..++.++.++.|..+|..+++.+......................+.+++...
T Consensus       126 ------~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~  196 (376)
T 3q7m_A          126 ------AWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGD  196 (376)
T ss_dssp             ------EEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCT
T ss_pred             ------EEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcC
Confidence                  32332222111112222  3 36777888999999999999765443321111000000112222455555553


Q ss_pred             -CcEEEEEcCCCceEeeeccCCCc----EE---EEEEcC--CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCccc
Q 010784          325 -SSVVTIDLRTMQKVMTPAICKPI----LH---SFSIMP--SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVG  393 (501)
Q Consensus       325 -~~i~~~d~~~~~~~~~~~~~~~~----v~---~v~~~~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~  393 (501)
                       +.+..+|..+++.+.........    +.   .+...|  .+..++.++.++ +..+|..+++..      ....  ..
T Consensus       197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~------w~~~--~~  268 (376)
T 3q7m_A          197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM------WKRE--LG  268 (376)
T ss_dssp             TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE------EEEC--CC
T ss_pred             CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE------eecc--CC
Confidence             47999999999988766532110    00   011111  244566666555 999999987643      2222  22


Q ss_pred             CeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          394 SVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       394 ~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      ....+....+.++++ +.++.|..+|..+++.+......    ....+.....  .+..|+.++  .+|.|.++|..+++
T Consensus       269 ~~~~~~~~~~~l~~~-~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~~~~--~~~~l~v~~--~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          269 SVNDFIVDGNRIYLV-DQNDRVMALTIDGGVTLWTQSDL----LHRLLTSPVL--YNGNLVVGD--SEGYLHWINVEDGR  339 (376)
T ss_dssp             CEEEEEEETTEEEEE-ETTCCEEEEETTTCCEEEEECTT----TTSCCCCCEE--ETTEEEEEC--TTSEEEEEETTTCC
T ss_pred             CCCCceEECCEEEEE-cCCCeEEEEECCCCcEEEeeccc----CCCcccCCEE--ECCEEEEEe--CCCeEEEEECCCCc
Confidence            344555555566665 47899999999999887665311    1112222222  356777777  56899999977665


Q ss_pred             c
Q 010784          474 C  474 (501)
Q Consensus       474 ~  474 (501)
                      .
T Consensus       340 ~  340 (376)
T 3q7m_A          340 F  340 (376)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.06  E-value=1.8e-08  Score=102.39  Aligned_cols=247  Identities=12%  Similarity=-0.011  Sum_probs=144.3

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEE-----eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCC
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVT-----SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK  223 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s-----~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~  223 (501)
                      +|...+..++|||             ||++|+-     |+...+|++||  +++.+.. ..+......++|    . +++
T Consensus       126 ~~~~~l~~~~~Sp-------------Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~W----s-Dg~  186 (693)
T 3iuj_A          126 DGTTALDQLSFSR-------------DGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISW----L-GNE  186 (693)
T ss_dssp             TSCCEEEEEEECT-------------TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEE----E-TTT
T ss_pred             CCcEEEEEEEECC-------------CCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEE----e-CCC
Confidence            4666889999999             8898883     44446799999  5554332 111111245677    3 778


Q ss_pred             EEEEeeCCC-------------cEEEEeccCCCccccccceeeccC-CCCceeEEEEeecCCeEE-EEEeC---CCeEEE
Q 010784          224 ILASGGEDA-------------TVRLWSLSSSGKRGQQALKATLYG-HEKPIKLMSVAGHKSFLL-VTISK---DSKVRV  285 (501)
Q Consensus       224 ~l~sg~~dg-------------~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l-~s~s~---dg~v~v  285 (501)
                      .|+.++.+.             .|++|++.+...  +..++..... |...+..+.++| ++++| ++.+.   +..|++
T Consensus       187 ~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~--~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          187 GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE--DDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYV  263 (693)
T ss_dssp             EEEEEESSCCC-------CCCCEEEEEETTSCGG--GCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEE
T ss_pred             EEEEEEecCcccccccccCCCcEEEEEECCCCcc--cceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEE
Confidence            888777764             399999887542  1112333333 445577889998 55555 44432   247888


Q ss_pred             EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc-EEEEEc
Q 010784          286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS-LICTGG  364 (501)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~  364 (501)
                      +|+.++..                                           ....+..+....... ++++|. +++...
T Consensus       264 ~d~~~~~~-------------------------------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~  299 (693)
T 3iuj_A          264 KDLSQENA-------------------------------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTN  299 (693)
T ss_dssp             EETTSTTC-------------------------------------------CCEEEECSSSSCEEE-EEEETTEEEEEEC
T ss_pred             EECCCCCC-------------------------------------------ceEEEeCCCCceEEE-EeccCCEEEEEEC
Confidence            88876521                                           011222233333333 445544 444444


Q ss_pred             CC---c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCC--cEEEEeCCCcccccccccCCCCC
Q 010784          365 IG---K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDL--RINIWETDTGMLANSLLCNYPEE  436 (501)
Q Consensus       365 ~d---~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~  436 (501)
                      .+   . |..+|+.++..    .....+..|...+.  .|+++  .++++...++  .|++|++..+ ....+..    .
T Consensus       300 ~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~----p  368 (693)
T 3iuj_A          300 RDAPNRRLVTVDAANPGP----AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVAL----P  368 (693)
T ss_dssp             TTCTTCEEEEEETTSCCG----GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECC----S
T ss_pred             CCCCCCEEEEEeCCCCCc----cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeec----C
Confidence            32   4 88999987642    11234555555554  66665  5666654555  6889998744 3444421    2


Q ss_pred             CCcceeeeEeeccccEEEEeecC--CCceEEEeeccCCcc
Q 010784          437 ADISTGCSAMAVSGCRIVTASYG--EPGLLQFRDFSNATC  474 (501)
Q Consensus       437 ~~~~v~~~~~s~~g~~l~s~~~d--~~g~i~~w~~~~~~~  474 (501)
                      ....+..+.++++++.|+....+  ..+.|+.||+..+..
T Consensus       369 ~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          369 GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            23457778888888766654321  347888998876553

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.02  E-value=9.7e-09  Score=98.42  Aligned_cols=265  Identities=12%  Similarity=0.059  Sum_probs=166.7

Q ss_pred             cCcEEEEeeC-CCceEEec--CCceeeeccC-CCCceEEEEeeecCC-CCCCEEEEee------------------CCCc
Q 010784          177 TENVLVTSSC-DHSIRLWW--KGSCQRCFKG-HNGPVSTLSDKLLGD-GSGKILASGG------------------EDAT  233 (501)
Q Consensus       177 ~~~~l~s~~~-dg~i~vwd--~~~~~~~~~~-h~~~v~~l~~s~~~~-~~~~~l~sg~------------------~dg~  233 (501)
                      ||+++..... ++.|.+.|  +.++...+.- .......+++.   . |++.++++++                  .++.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~---~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQ---KWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEEC---CSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeee---ecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            6777776665 45688888  5666653321 23456777763   3 6788888884                  3467


Q ss_pred             EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC---------------eEEEEECCCCcccccee
Q 010784          234 VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS---------------KVRVWDTSTSSAVRSSC  298 (501)
Q Consensus       234 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg---------------~v~vwd~~~~~~~~~~~  298 (501)
                      +.+.|..+.+.      ...+.--. .-..++++| +++++++.+.+.               .|.+.|......     
T Consensus       177 vtvID~~t~~v------~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~-----  243 (595)
T 1fwx_A          177 FTAVDADKWEV------AWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK-----  243 (595)
T ss_dssp             EEEEETTTTEE------EEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH-----
T ss_pred             EEEEECCCCeE------EEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeE-----
Confidence            89999987653      44433211 235567887 566777766543               355555432211     


Q ss_pred             cccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC--Cce-EeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEec
Q 010784          299 CVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT--MQK-VMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDI  373 (501)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~  373 (501)
                                   ....++..++   +.+.+.|.++  ++. +..+.. .....++.++|||+++++++...  |.++|+
T Consensus       244 -------------~v~~Gk~~~i---~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~  306 (595)
T 1fwx_A          244 -------------AIAAGDYQEL---NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV  306 (595)
T ss_dssp             -------------HHHHTCSEEE---TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred             -------------eccCCCeeEE---CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEEC
Confidence                         0011122222   5699999998  444 444443 33557899999999988888433  999999


Q ss_pred             CCCCCC------CCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC----------cccccccccCCCCC
Q 010784          374 RRSQDA------VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT----------GMLANSLLCNYPEE  436 (501)
Q Consensus       374 ~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~----------~~~~~~~~~~~~~~  436 (501)
                      .+.+..      .....+.+... ......++|+|+ ..+++.-.|+.|.+||+.+          .+.+.++..+...+
T Consensus       307 ~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpG  385 (595)
T 1fwx_A          307 TRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPG  385 (595)
T ss_dssp             GGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEE
T ss_pred             cccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccc
Confidence            964210      00001122221 346788999999 7777778999999999987          45666776555445


Q ss_pred             CCcceeeeEeeccccEEEEeecCCCceE-----------EEeeccCCccc
Q 010784          437 ADISTGCSAMAVSGCRIVTASYGEPGLL-----------QFRDFSNATCP  475 (501)
Q Consensus       437 ~~~~v~~~~~s~~g~~l~s~~~d~~g~i-----------~~w~~~~~~~~  475 (501)
                      |...-.+..++|||++|+++..-...++           .++|++.+...
T Consensus       386 h~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          386 HLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             EEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred             cceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence            5555566788999999999876432344           78888655543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.01  E-value=7.5e-08  Score=97.03  Aligned_cols=274  Identities=12%  Similarity=0.048  Sum_probs=163.4

Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccCCCC-----------ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNG-----------PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK  244 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~-----------~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~  244 (501)
                      +..++.++.++.|.-+|  +|+.+-.+.....           ....+.+      .+..|+.++.|+.|..+|..+++.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~v~v~~~dg~l~alD~~tG~~  150 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL------WKGKVYVGAWDGRLIALDAATGKE  150 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE------ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE------ECCEEEEEcCCCEEEEEECCCCCE
Confidence            45666667788888888  7777655543211           0112332      346788888999999999999874


Q ss_pred             cccccceeeccCC-C----CceeE-EEEeecCCeEEEEEeC------CCeEEEEECCCCccccceeccccee--------
Q 010784          245 RGQQALKATLYGH-E----KPIKL-MSVAGHKSFLLVTISK------DSKVRVWDTSTSSAVRSSCCVGMTS--------  304 (501)
Q Consensus       245 ~~~~~~~~~~~~~-~----~~v~~-l~~~~~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~--------  304 (501)
                            +-.+..+ .    ..+.. ..+.  ++. ++.++.      ++.|+.+|..+++.+-.........        
T Consensus       151 ------~W~~~~~~~~~~~~~~~~~p~v~--~~~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~  221 (677)
T 1kb0_A          151 ------VWHQNTFEGQKGSLTITGAPRVF--KGK-VIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES  221 (677)
T ss_dssp             ------EEEEETTTTCCSSCBCCSCCEEE--TTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred             ------EeeecCCcCcCcCcccccCcEEE--CCE-EEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence                  3333322 1    11211 1121  444 444442      7999999999998765433221110        


Q ss_pred             ------------------cCC---CceeeecCCCeEEEEeCC--------------------cEEEEEcCCCceEeeecc
Q 010784          305 ------------------VPG---VPVDMKCHESMLYIASGS--------------------SVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       305 ------------------~~~---~~~~~~~~~~~~~~~~~~--------------------~i~~~d~~~~~~~~~~~~  343 (501)
                                        ..+   ....+....+.+++.+++                    .+..+|.++++.+..++.
T Consensus       222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~  301 (677)
T 1kb0_A          222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE  301 (677)
T ss_dssp             HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred             cccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec
Confidence                              000   112233345666766643                    399999999999877664


Q ss_pred             --CC-------CcEEEEEEcCCC---cEEEEEcCCc-EEEEecCCCCCCCCCC--Ccc---cccCcccCe----------
Q 010784          344 --CK-------PILHSFSIMPSK---SLICTGGIGK-AMTWDIRRSQDAVKPQ--PMA---ELDGHVGSV----------  395 (501)
Q Consensus       344 --~~-------~~v~~v~~~~~~---~~l~~~~~d~-i~iwd~~~~~~~~~~~--~~~---~~~~h~~~v----------  395 (501)
                        |.       ....-+....+|   ..++.++.++ ++++|..+++.+....  ++.   .+.....++          
T Consensus       302 ~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~  381 (677)
T 1kb0_A          302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSK  381 (677)
T ss_dssp             STTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTS
T ss_pred             CCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCC
Confidence              21       112222333467   6788888888 9999999987641100  000   000000000          


Q ss_pred             --------------EEEEecCC-eEEEEecC-------------------------------------------CCcEEE
Q 010784          396 --------------TQLHMDPY-KIVTGGRD-------------------------------------------DLRINI  417 (501)
Q Consensus       396 --------------~~l~~~~~-~~l~~gs~-------------------------------------------dg~i~i  417 (501)
                                    ..++++|+ .++...+.                                           .|.|..
T Consensus       382 ~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A  461 (677)
T 1kb0_A          382 PQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLA  461 (677)
T ss_dssp             CEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEE
T ss_pred             ccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEE
Confidence                          25678887 54444322                                           278999


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      ||+.+++.+-.+..      ...+....+..++..++.++  .+|.+++||..+++.
T Consensus       462 ~D~~tG~~~W~~~~------~~~~~~g~~~~~g~~v~~g~--~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          462 WDPVAQKAAWSVEH------VSPWNGGTLTTAGNVVFQGT--ADGRLVAYHAATGEK  510 (677)
T ss_dssp             EETTTTEEEEEEEE------SSSCCCCEEEETTTEEEEEC--TTSEEEEEETTTCCE
T ss_pred             EeCCCCcEEeecCC------CCCCcCcceEeCCCEEEEEC--CCCcEEEEECCCCce
Confidence            99999998877742      22345556778888888887  669999999877664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.99  E-value=7.8e-08  Score=97.10  Aligned_cols=276  Identities=11%  Similarity=0.039  Sum_probs=162.5

Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccCCCCc----------e-EEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGP----------V-STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK  244 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~----------v-~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~  244 (501)
                      +..++.++.++.|..+|  +|+.+-.+......          + ..+..      .+..|+.++.|+.|..+|..+++.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~v~v~~~dg~l~AlDa~TG~~  143 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV------WKGKVYVGVLDGRLEAIDAKTGQR  143 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE------ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE------ECCEEEEEccCCEEEEEECCCCCE
Confidence            45677777788899998  77776655432210          1 11222      345788888999999999999875


Q ss_pred             cccccceeeccC--CC---CceeE-EEEeecCCeEEEEEe-----CCCeEEEEECCCCccccceecccce---e------
Q 010784          245 RGQQALKATLYG--HE---KPIKL-MSVAGHKSFLLVTIS-----KDSKVRVWDTSTSSAVRSSCCVGMT---S------  304 (501)
Q Consensus       245 ~~~~~~~~~~~~--~~---~~v~~-l~~~~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~---~------  304 (501)
                            +-.+..  +.   ..+.+ ..+.  ++..++..+     .+|.|..||.++++.+-........   .      
T Consensus       144 ------~W~~~~~~~~~~~~~~~~sP~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~  215 (689)
T 1yiq_A          144 ------AWSVDTRADHKRSYTITGAPRVV--NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM  215 (689)
T ss_dssp             ------EEEEECCSCTTSCCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred             ------eeeecCcCCCCCCccccCCcEEE--CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence                  222221  11   11111 1111  444444332     3789999999999876544321100   0      


Q ss_pred             ----------------cCC---CceeeecCCCeEEEEeCC--------------------cEEEEEcCCCceEeeecc--
Q 010784          305 ----------------VPG---VPVDMKCHESMLYIASGS--------------------SVVTIDLRTMQKVMTPAI--  343 (501)
Q Consensus       305 ----------------~~~---~~~~~~~~~~~~~~~~~~--------------------~i~~~d~~~~~~~~~~~~--  343 (501)
                                      ..+   ....+....+.+++.+++                    .+..+|.++++.+..++.  
T Consensus       216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~  295 (689)
T 1yiq_A          216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP  295 (689)
T ss_dssp             HHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred             cccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence                            000   012223344666666654                    389999999999987764  


Q ss_pred             CC-------CcEEEEEEcCCCc---EEEEEcCCc-EEEEecCCCCCCCCCC--C--ccc------------------ccC
Q 010784          344 CK-------PILHSFSIMPSKS---LICTGGIGK-AMTWDIRRSQDAVKPQ--P--MAE------------------LDG  390 (501)
Q Consensus       344 ~~-------~~v~~v~~~~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~--~--~~~------------------~~~  390 (501)
                      |.       ..+.-.....+|+   .++.++.++ ++++|..+++.+....  .  ...                  +..
T Consensus       296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~  375 (689)
T 1yiq_A          296 GDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKN  375 (689)
T ss_dssp             TCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTS
T ss_pred             cccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCC
Confidence            21       1222222223565   788888888 9999999987641000  0  000                  000


Q ss_pred             ccc-----------CeEEEEecCC-eEEEEecC---------------------------------------------CC
Q 010784          391 HVG-----------SVTQLHMDPY-KIVTGGRD---------------------------------------------DL  413 (501)
Q Consensus       391 h~~-----------~v~~l~~~~~-~~l~~gs~---------------------------------------------dg  413 (501)
                      ...           .-..++++|+ .++...+.                                             +|
T Consensus       376 ~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g  455 (689)
T 1yiq_A          376 GKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSG  455 (689)
T ss_dssp             SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEE
T ss_pred             CCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcce
Confidence            000           0123678887 54444311                                             47


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      .|..||+.+|+.+-.+..+      .....-.+...+.+++.++  .||.|+.||..+++..
T Consensus       456 ~l~A~D~~tG~~~W~~~~~------~~~~~g~~~tagglvf~gt--~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          456 KLIAWDPVKQQAAWEVPYV------TIFNGGTLSTAGNLVFEGS--ADGRVIAYAADTGEKL  509 (689)
T ss_dssp             EEEEEETTTTEEEEEEEES------SSCCCCEEEETTTEEEEEC--TTSEEEEEETTTCCEE
T ss_pred             eEEEEECCCCCeEeEccCC------CCccCccceECCCEEEEEC--CCCcEEEEECCCCccc
Confidence            8999999999988777432      2233346777888999998  6699999998877643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.98  E-value=2.2e-08  Score=92.13  Aligned_cols=259  Identities=10%  Similarity=-0.031  Sum_probs=155.0

Q ss_pred             cEEEEeeCCC----ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee----------CCCcEEEEeccCC
Q 010784          179 NVLVTSSCDH----SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG----------EDATVRLWSLSSS  242 (501)
Q Consensus       179 ~~l~s~~~dg----~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~----------~dg~i~iwd~~~~  242 (501)
                      ..+++...++    +|.+.|  +++.+.++.....+  .+.++    +++++++.+.          .++.|.+||+.++
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~s----pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~  106 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAG----HSGSDFALASTSFARSAKGKRTDYVEVFDPVTF  106 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEEC----TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEEC----CCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            4555555455    777999  77888888755556  78887    8999888886          3689999999998


Q ss_pred             CccccccceeeccCC-------CCceeEEEEeecCCeEEEEEeC--CCeEEE--EECCCCccccceecccceecCCCcee
Q 010784          243 GKRGQQALKATLYGH-------EKPIKLMSVAGHKSFLLVTISK--DSKVRV--WDTSTSSAVRSSCCVGMTSVPGVPVD  311 (501)
Q Consensus       243 ~~~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~s~s~--dg~v~v--wd~~~~~~~~~~~~~~~~~~~~~~~~  311 (501)
                      +.      +..+...       ......+.++| ++++++++..  +..|.+  +|..+   +...      ...+. ..
T Consensus       107 ~v------v~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~i------~v~~~-~~  169 (368)
T 1mda_H          107 LP------IADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQLT------KSASC-FH  169 (368)
T ss_dssp             CE------EEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEEE------ECSSC-CC
T ss_pred             CE------EEEEECCCccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceEE------ECCCc-eE
Confidence            74      5554322       12345789998 6777777664  467888  88876   1111      11111 22


Q ss_pred             eecCCCeEEEEe--CCcEEEEEcCC-----CceEe----eeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCC
Q 010784          312 MKCHESMLYIAS--GSSVVTIDLRT-----MQKVM----TPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAV  380 (501)
Q Consensus       312 ~~~~~~~~~~~~--~~~i~~~d~~~-----~~~~~----~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~  380 (501)
                      +...+...+++.  ++.+.+.|+.+     ++...    .+.....+.   . ++++..++..+.+.+.+.|....... 
T Consensus       170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~~~~~~~-  244 (368)
T 1mda_H          170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDIPAAGAT-  244 (368)
T ss_dssp             CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEECCSSCCE-
T ss_pred             EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEECCCCcce-
Confidence            223333344432  23667778776     33221    111223333   3 45544444333444999998753211 


Q ss_pred             CCCCccccc---------C-cccCeEEEEecCC--eEEEEec---C-----CCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784          381 KPQPMAELD---------G-HVGSVTQLHMDPY--KIVTGGR---D-----DLRINIWETDTGMLANSLLCNYPEEADIS  440 (501)
Q Consensus       381 ~~~~~~~~~---------~-h~~~v~~l~~~~~--~~l~~gs---~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  440 (501)
                         .+..+.         + .......++++|+  +++++..   .     ++.+.++|+.+++.+.++..+      ..
T Consensus       245 ---v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg------~~  315 (368)
T 1mda_H          245 ---MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG------HD  315 (368)
T ss_dssp             ---EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE------EE
T ss_pred             ---EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC------CC
Confidence               011110         0 0111222678988  5665533   2     235669999999999988532      25


Q ss_pred             eeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          441 TGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       441 v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      ...++|+|||++++.+....++.|.++|..+.+.
T Consensus       316 p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          316 SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             cceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence            7889999999854444421259999999988764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.97  E-value=6.5e-08  Score=88.74  Aligned_cols=249  Identities=12%  Similarity=0.036  Sum_probs=148.1

Q ss_pred             CcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          178 ENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      +..+..++.++.|..|| +++.+..+..+...+.++..    +.++ .++.++.+  |..+|. +++.      ...+..
T Consensus        30 ~g~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~----~~~g-~l~v~t~~--l~~~d~-~g~~------~~~~~~   95 (330)
T 3hxj_A           30 NGTIYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSI----GKDG-TIYFGSDK--VYAINP-DGTE------KWRFDT   95 (330)
T ss_dssp             TSCEECSSTTTTTEEECTTSCEEESSCGGGEEEECCEE----TTTT-EECCSSCE--EEEECC-CGGG------GGGSCC
T ss_pred             CCeEEEEcCCCEEEEECCCCcEEEEEecCCCcccceEE----ecCC-cEEEecCc--EEEECC-CCcE------EEEEEC
Confidence            34567777888899999 66655554444444555554    2444 55556555  888886 4332      222222


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC-CCeEEEEeC-CcEEEEEcCC
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH-ESMLYIASG-SSVVTIDLRT  334 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~i~~~d~~~  334 (501)
                      .........+.   +..++.++.++.|..+|.. ++.......     .......+... ...+++++. +.+..+|.. 
T Consensus        96 ~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-----~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-  165 (330)
T 3hxj_A           96 KKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFKT-----KKAIYATPIVSEDGTIYVGSNDNYLYAINPD-  165 (330)
T ss_dssp             -----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEEC-----SSCCCSCCEECTTSCEEEECTTSEEEEECTT-
T ss_pred             CCCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcC-----CCceeeeeEEcCCCEEEEEcCCCEEEEECCC-
Confidence            22222233333   3357778888999999988 654322211     11122233333 445666665 689999998 


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL  413 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg  413 (501)
                      ++....+......+.++...+++.+++..  ++|..+| .+++..      .........+.++..+++ .+.++ +.++
T Consensus       166 g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~------~~~~~~~~~~~~~~~~~~g~l~v~-t~~~  235 (330)
T 3hxj_A          166 GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEK------WNFYAGYWTVTRPAISEDGTIYVT-SLDG  235 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEE------EEECCSSCCCSCCEECTTSCEEEE-ETTT
T ss_pred             CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEE------EEEccCCcceeceEECCCCeEEEE-cCCC
Confidence            77776666556667777887788766655  5599999 655432      334444456788888888 66666 4778


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      .|..+|. +++.+..+..     ....+..+.+.++|.+ ..++  .+|.|..+|.
T Consensus       236 gl~~~~~-~g~~~~~~~~-----~~~~~~~~~~~~~g~l-~v~t--~~ggl~~~d~  282 (330)
T 3hxj_A          236 HLYAINP-DGTEKWRFKT-----GKRIESSPVIGNTDTI-YFGS--YDGHLYAINP  282 (330)
T ss_dssp             EEEEECT-TSCEEEEEEC-----SSCCCSCCEECTTSCE-EEEC--TTCEEEEECT
T ss_pred             eEEEECC-CCCEeEEeeC-----CCCccccceEcCCCeE-EEec--CCCCEEEECC
Confidence            8888874 5666655532     1223344556556654 4455  4567777774

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.96  E-value=7.6e-10  Score=103.21  Aligned_cols=261  Identities=10%  Similarity=-0.006  Sum_probs=136.2

Q ss_pred             CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce
Q 010784          121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC  198 (501)
Q Consensus       121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~  198 (501)
                      ++..+++|+.|+.+..||..+| +.+..+..  +.+.+..+..             ++..+++++.||.|+.||  +++.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG-~~~W~~~~--~~~~s~p~~~-------------~g~~~v~~s~dg~l~a~d~~tG~~   71 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG-SIKWTLKE--DPVLQVPTHV-------------EEPAFLPDPNDGSLYTLGSKNNEG   71 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC-CEEEEEEC--CCSCCCC------------------CCEEECTTTCCEEEC-----CC
T ss_pred             eCCEEEEEcCCCEEEEEECCCC-CEEEEecC--CCceecceEc-------------CCCEEEEeCCCCEEEEEECCCCce
Confidence            3556777788999999999986 66666655  4454444444             677888889999999999  6766


Q ss_pred             eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe
Q 010784          199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS  278 (501)
Q Consensus       199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s  278 (501)
                      +..+..+.....  ..+|.. ..+..+++|+.|+.|+.||..+++.      +..+..+.    ...++| .+..+++++
T Consensus        72 ~w~~~~~~~~~~--~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~------~w~~~~~~----~~~~~p-~~~~v~~~~  137 (369)
T 2hz6_A           72 LTKLPFTIPELV--QASPCR-SSDGILYMGKKQDIWYVIDLLTGEK------QQTLSSAF----ADSLSP-STSLLYLGR  137 (369)
T ss_dssp             SEECSCCHHHHH--TTCSCC------CCCCEEEEEEEEECCC---------------------------------EEEEE
T ss_pred             eeeeeccCcccc--ccCceE-ecCCEEEEEeCCCEEEEEECCCCcE------EEEecCCC----cccccc-cCCEEEEEe
Confidence            655543321110  001100 1355788899999999999999874      44443332    134455 567888899


Q ss_pred             CCCeEEEEECCCCccccceecccceecCCCceeeec-CCCeEEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC
Q 010784          279 KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKC-HESMLYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS  356 (501)
Q Consensus       279 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~  356 (501)
                      .|+.|+.||.++++.+......   ........-.. ....+++++ ++.+..||.++++.+..+......+....++++
T Consensus       138 ~dg~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~d  214 (369)
T 2hz6_A          138 TEYTITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQRE  214 (369)
T ss_dssp             EEEEEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTS
T ss_pred             cCCEEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCC
Confidence            9999999999999765443211   11111110000 113455544 468999999999998877643333344455666


Q ss_pred             CcEEEE---EcCCcEEEEecCCCC----CCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCC
Q 010784          357 KSLICT---GGIGKAMTWDIRRSQ----DAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       357 ~~~l~~---~~~d~i~iwd~~~~~----~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~  422 (501)
                      +...+.   .+++.++.+|..+++    ..      ..+.. .+.+.+... .+..+..++.||.++.++...
T Consensus       215 g~~~v~~~~~~~~~l~~ld~~tG~~~~~~~------W~~~~-~~~~~sp~~-~~g~lyv~~~~G~l~al~~~~  279 (369)
T 2hz6_A          215 GLRKVMHINVAVETLRYLTFMSGEVGRITK------WKYPF-PKETEAKSK-LTPTLYVGKYSTSLYASPSMV  279 (369)
T ss_dssp             SCEEECCEEEEHHHHHHHHHHHHHHHHHHT------SCCCC-CCHHHHHHH-SEEEECBEECSSCEECCEEEE
T ss_pred             ceEeccceeecccceeeeehhcCCccccee------eeecc-Ccccccccc-ccceEEEecccCCEEecCccc
Confidence            654211   112226777776654    32      11111 111110001 124444556899999988763

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.92  E-value=4.2e-06  Score=74.02  Aligned_cols=250  Identities=10%  Similarity=0.007  Sum_probs=145.1

Q ss_pred             EEeecCCeeeEEEEeccccccc----ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCce
Q 010784          124 FSTQGSSIQNIKIDNFLSESYY----RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSC  198 (501)
Q Consensus       124 ~~~~g~~d~~i~vw~~~~~~~~----~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~  198 (501)
                      +|..+. .+.|+.+++......    ...+......+..++|.+.            ++.++++-..++.|.+++ .+..
T Consensus         3 ~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~------------~~~ly~~d~~~~~I~~~~~~g~~   69 (267)
T 1npe_A            3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV------------DKVVYWTDISEPSIGRASLHGGE   69 (267)
T ss_dssp             EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT------------TTEEEEEETTTTEEEEEESSSCC
T ss_pred             EEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecC------------CCEEEEEECCCCEEEEEecCCCC
Confidence            343333 346777777643110    1112222345778999873            345556666678999998 4443


Q ss_pred             eeec-cCCCCceEEEEeeecCCCCCC-EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEE
Q 010784          199 QRCF-KGHNGPVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT  276 (501)
Q Consensus       199 ~~~~-~~h~~~v~~l~~s~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s  276 (501)
                      ...+ .........+++.    +++. ++++-...+.|.+++++....      .............++++|.++.++++
T Consensus        70 ~~~~~~~~~~~p~~ia~d----~~~~~lyv~d~~~~~I~~~~~~g~~~------~~~~~~~~~~P~~i~vd~~~g~lyv~  139 (267)
T 1npe_A           70 PTTIIRQDLGSPEGIALD----HLGRTIFWTDSQLDRIEVAKMDGTQR------RVLFDTGLVNPRGIVTDPVRGNLYWT  139 (267)
T ss_dssp             CEEEECTTCCCEEEEEEE----TTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             cEEEEECCCCCccEEEEE----ecCCeEEEEECCCCEEEEEEcCCCCE------EEEEECCCCCccEEEEeeCCCEEEEE
Confidence            3333 2222466888886    5544 445555677899999875432      11122122345788998745555555


Q ss_pred             EeC--CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEc
Q 010784          277 ISK--DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIM  354 (501)
Q Consensus       277 ~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~  354 (501)
                      ...  .+.|..+++..... .                                         .+  ....-.....++++
T Consensus       140 ~~~~~~~~I~~~~~dg~~~-~-----------------------------------------~~--~~~~~~~P~gia~d  175 (267)
T 1npe_A          140 DWNRDNPKIETSHMDGTNR-R-----------------------------------------IL--AQDNLGLPNGLTFD  175 (267)
T ss_dssp             ECCSSSCEEEEEETTSCCC-E-----------------------------------------EE--ECTTCSCEEEEEEE
T ss_pred             ECCCCCcEEEEEecCCCCc-E-----------------------------------------EE--EECCCCCCcEEEEc
Confidence            433  36777777653211 0                                         00  00112356789999


Q ss_pred             CCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccC
Q 010784          355 PSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCN  432 (501)
Q Consensus       355 ~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~  432 (501)
                      +++..|..+. ..+ |..+|.......      ..+.+ ......++...+.++++....+.|.++|..+++.+.++..+
T Consensus       176 ~~~~~lyv~d~~~~~I~~~~~~g~~~~------~~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g  248 (267)
T 1npe_A          176 AFSSQLCWVDAGTHRAECLNPAQPGRR------KVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPH  248 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTEEEEE------EEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCS
T ss_pred             CCCCEEEEEECCCCEEEEEecCCCceE------EEecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccc
Confidence            9866555444 445 999998754321      11121 23346777765577777667889999999999988888422


Q ss_pred             CCCCCCcceeeeEeecccc
Q 010784          433 YPEEADISTGCSAMAVSGC  451 (501)
Q Consensus       433 ~~~~~~~~v~~~~~s~~g~  451 (501)
                          .......+++.|++.
T Consensus       249 ----~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          249 ----KQTRLYGITIALSQC  263 (267)
T ss_dssp             ----SCCCCCCEEEECSCC
T ss_pred             ----cccccceeeecCccC
Confidence                122356788888765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.89  E-value=6.9e-06  Score=84.94  Aligned_cols=325  Identities=8%  Similarity=-0.013  Sum_probs=183.3

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCC-c---ceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHK-A---RITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~-~---~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      .|.+|..+++|.+.+... + -+..||..++ +. ..+.... .   .|.++...+             +|++.+.. . 
T Consensus        89 ~I~~i~~d~~g~lWigT~-~-Gl~~yd~~~~-~f-~~~~~~~~~~~~~i~~i~~d~-------------~g~lwi~t-~-  149 (795)
T 4a2l_A           89 ISRIVKTDSQGRVWIGTR-D-GLSRYDEEKD-IF-QNFFYEKNGKHLQVNGIEEIS-------------PEQLLIST-P-  149 (795)
T ss_dssp             CEEEEEECTTSCEEEEES-S-CEEEEETTTT-EE-EEECCEETTEECCCCEEEEEE-------------TTEEEEEE-T-
T ss_pred             ceeEEEECCCCCEEEEeC-C-chheeCCCCC-eE-EeccccccCCCceEEEEEECC-------------CCCEEEEE-C-
Confidence            388999998886665433 3 4788887653 22 2222111 1   188888776             56665544 3 


Q ss_pred             CceEEec-CCceeeeccC-C-CCc-eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee-ccCCCCcee
Q 010784          188 HSIRLWW-KGSCQRCFKG-H-NGP-VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT-LYGHEKPIK  262 (501)
Q Consensus       188 g~i~vwd-~~~~~~~~~~-h-~~~-v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~  262 (501)
                      +-|..|| .......+.. + ... |.++...    .++. +..|..++.|..|+..++..      ... .......|.
T Consensus       150 ~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d----~~g~-lwigt~~~Gl~~~~~~~~~~------~~~~~~~~~~~i~  218 (795)
T 4a2l_A          150 EGLIMFDIKESKFIDDSFSTAMHKTIASTLYR----QGDQ-IYIGTSTDGLYTYSITQKTF------EKVIPILGTKQIQ  218 (795)
T ss_dssp             TEEEEEETTTTEEECSSSCHHHHTCCEEEEEE----ETTE-EEEEESSSCEEEEETTTCCE------EECC----CCCEE
T ss_pred             CceEEEECCCCEEEeccCCCCCCcceEEEEEC----CCCC-EEEEECCCCEEEEeCCCCeE------EEecCCCCCCeeE
Confidence            4488888 2222222211 1 112 7777763    4554 44466655688898876542      111 112345688


Q ss_pred             EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc--cceecCCCceeeecC-CCeEEEEeCCcEEEEEcCCCceEe
Q 010784          263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV--GMTSVPGVPVDMKCH-ESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      ++.... ++. +..|+.++-+..||..+++........  ........+.++..+ ...+++++.+.+.++|..+.+...
T Consensus       219 ~i~~d~-~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~  296 (795)
T 4a2l_A          219 AILQQS-PTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFAS  296 (795)
T ss_dssp             EEEEEE-TTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEE
T ss_pred             EEEEcC-CCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEE
Confidence            887765 454 455555555899998776432111000  000112335555544 456777777789999987765443


Q ss_pred             eec-------cCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC
Q 010784          340 TPA-------ICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD  411 (501)
Q Consensus       340 ~~~-------~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~  411 (501)
                      ...       .....|.++...++|.+.+....++|..|+........-......-.-....|.++..+++ .+.++ +.
T Consensus       297 ~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG-t~  375 (795)
T 4a2l_A          297 YSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIG-TN  375 (795)
T ss_dssp             ECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEE-ES
T ss_pred             EecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEE-EC
Confidence            221       1235699999999988766555566999987654321000000000112456999999888 66665 57


Q ss_pred             CCcEEEEeCCCcccccccccC-CC--CCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          412 DLRINIWETDTGMLANSLLCN-YP--EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       412 dg~i~iwd~~~~~~~~~~~~~-~~--~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      ++-|..|+..+++........ .+  ......|.++...++|+.|..|+  .++-|..++...
T Consensus       376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt--~~~Gl~~~d~~~  436 (795)
T 4a2l_A          376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT--HAGGLSILHRNS  436 (795)
T ss_dssp             SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE--TTTEEEEEETTT
T ss_pred             CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe--CcCceeEEeCCC
Confidence            777999998776543222110 00  01245688888888998455555  334566776543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.88  E-value=2.6e-05  Score=80.66  Aligned_cols=307  Identities=8%  Similarity=0.007  Sum_probs=185.3

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecc-------cCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLS-------DHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~-------~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      .|.++..+++|.+.+... . -+.+++..++ .......       -....|.++...+             +|+ |..|
T Consensus       264 ~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~D~-------------~g~-lWig  326 (795)
T 4a2l_A          264 YIRSLAMDSQNRLWIGTF-N-DLNIYHEGTD-SFASYSSNPVENGSLSQRSVRSIFMDS-------------QGG-MWLG  326 (795)
T ss_dssp             BEEEEEECTTSCEEEEES-S-CEEEEETTTT-EEEEECCCTTSTTSCSSSCEEEEEECT-------------TSC-EEEE
T ss_pred             eEEEEEEcCCCCEEEEeC-C-hhheEcCCCC-eEEEEecCCCCCCCCCCCcEEEEEEeC-------------CcC-EEEE
Confidence            388888888877666443 3 4777887653 2222211       1235688988876             555 5556


Q ss_pred             eCCCceEEec-CCceeeeccC-------CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc-
Q 010784          185 SCDHSIRLWW-KGSCQRCFKG-------HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-  255 (501)
Q Consensus       185 ~~dg~i~vwd-~~~~~~~~~~-------h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-  255 (501)
                      +.++-|..++ .......+..       ....|.++..    +.+|. |..|+.++-|..|+..++..       ..+. 
T Consensus       327 t~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~----d~~g~-lWiGt~~~Gl~~~~~~~~~~-------~~~~~  394 (795)
T 4a2l_A          327 TYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVE----DKDKN-LWIGTNDGGLNLYNPITQRF-------TSYTL  394 (795)
T ss_dssp             ESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEE----CTTSC-EEEEESSSCEEEECTTTCCE-------EEECC
T ss_pred             ECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEE----CCCCC-EEEEECCCCeEEEcCCCCcE-------EEEec
Confidence            6667788887 2222222211       2346888876    35554 55677787899999876542       1111 


Q ss_pred             --------CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC-CCeEEEEeCCc
Q 010784          256 --------GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH-ESMLYIASGSS  326 (501)
Q Consensus       256 --------~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  326 (501)
                              .....|.++...+ ++..|..|+.++-|..+|..+++...... .........+.++..+ ...+++++.+.
T Consensus       395 ~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~-~~~~l~~~~v~~i~~d~~g~lwigt~~G  472 (795)
T 4a2l_A          395 QEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQ-RNSQLVNENVYAILPDGEGNLWLGTLSA  472 (795)
T ss_dssp             C------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECT-TTSCCSCSCEEEEEECSSSCEEEEESSC
T ss_pred             CCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeec-CCCCcCCCeeEEEEECCCCCEEEEecCc
Confidence                    1235688888764 55547778887789999988765322110 0000122344555544 35567777778


Q ss_pred             EEEEEcCCCceEeeec------cCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCc-ccccCcccCeEEEE
Q 010784          327 VVTIDLRTMQKVMTPA------ICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPM-AELDGHVGSVTQLH  399 (501)
Q Consensus       327 i~~~d~~~~~~~~~~~------~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~-~~~~~h~~~v~~l~  399 (501)
                      +..+|..+++......      .....|.++...++|.+.+... +++..||..+.+..  .... ..-......|.++.
T Consensus       473 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~--~~~~~~~~~l~~~~i~~i~  549 (795)
T 4a2l_A          473 LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDIQ--KASILPVSNVTKLFTNCIY  549 (795)
T ss_dssp             EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEEE--ECCCSCSCGGGGSCEEEEE
T ss_pred             eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeEE--EecCCCCCCCCCCeeEEEE
Confidence            9999988765443221      1236789999999998777665 66999998764320  0000 00012345789999


Q ss_pred             ecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784          400 MDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA  456 (501)
Q Consensus       400 ~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  456 (501)
                      .+++ .+.++. .. -|..||..+++.. .+.... .-....|.++...++|++.+++
T Consensus       550 ~d~~g~lWigT-~~-Gl~~~d~~~~~~~-~~~~~~-gl~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          550 EASNGIIWVGT-RE-GFYCFNEKDKQIK-RYNTTN-GLPNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             ECTTSCEEEEE-SS-CEEEEETTTTEEE-EECGGG-TCSCSCEEEEEECTTSCEEEEE
T ss_pred             ECCCCCEEEEe-CC-CceeECCCCCcEE-EeCCCC-CCchhheEEEEECCCCCEEEEc
Confidence            9888 666654 44 5888998765433 221111 1124468888888889877766

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.85  E-value=9.9e-07  Score=81.69  Aligned_cols=232  Identities=7%  Similarity=0.055  Sum_probs=134.1

Q ss_pred             CCCCE-EEEeeCCCcEEEEeccCCCccccccceeecc------C-CCCceeEEEEeecCCeEEEEEeCC------CeEEE
Q 010784          220 GSGKI-LASGGEDATVRLWSLSSSGKRGQQALKATLY------G-HEKPIKLMSVAGHKSFLLVTISKD------SKVRV  285 (501)
Q Consensus       220 ~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~------~-~~~~v~~l~~~~~~~~~l~s~s~d------g~v~v  285 (501)
                      .++++ +++|..++.|.++|+.+....  .+...++.      . ....-..+...| ++ +++++..+      |.|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~--p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPRE--PKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTS--CEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCC--ceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEE
Confidence            34455 455667889999999765321  11233331      0 111234566776 55 77776665      78999


Q ss_pred             EECCCCccccceecccceecCCCceeeecC--CCeEEEEe--------------------CCcEEEEEcCCCceEeeecc
Q 010784          286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCH--ESMLYIAS--------------------GSSVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------------------~~~i~~~d~~~~~~~~~~~~  343 (501)
                      +|..+.+.+.......  ......+.+.++  .+.++.+.                    +++|.+||+.+++.+.++..
T Consensus       169 lD~~T~~v~~~~~~~~--~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          169 LDHYSFEPLGKWEIDR--GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             ECTTTCCEEEECCSBC--TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             EECCCCeEEEEEccCC--CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            9999987665443211  122233334333  34344442                    46899999999888777765


Q ss_pred             C-C-CcEEEEEE--cCCCcEEEEEcC------Cc-EEEEecCCCCCCC------CC----CCcc----cccCcccCeEEE
Q 010784          344 C-K-PILHSFSI--MPSKSLICTGGI------GK-AMTWDIRRSQDAV------KP----QPMA----ELDGHVGSVTQL  398 (501)
Q Consensus       344 ~-~-~~v~~v~~--~~~~~~l~~~~~------d~-i~iwd~~~~~~~~------~~----~~~~----~~~~h~~~v~~l  398 (501)
                      . . .....+.|  +|+++++.+++.      ++ |.+|....++...      ..    ..+.    .+.+-......|
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            3 1 23455655  999998887775      33 7655543321000      00    0000    000002357889


Q ss_pred             EecCC--eEEEEecCCCcEEEEeCCC---cccccccccCCC---------CCCCcceeeeEeeccccEEEEee
Q 010784          399 HMDPY--KIVTGGRDDLRINIWETDT---GMLANSLLCNYP---------EEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       399 ~~~~~--~~l~~gs~dg~i~iwd~~~---~~~~~~~~~~~~---------~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      .++++  .++++.-..+.|.+||+..   .+++..+..+..         ..-...-..++++|||++|+++.
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99999  5556666688999999863   344555533200         00011357799999999999987

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.83  E-value=1e-06  Score=76.48  Aligned_cols=200  Identities=11%  Similarity=-0.085  Sum_probs=134.0

Q ss_pred             ceeEEEEeecCCeEEEEEeC--CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe--CCcEEEEEcCCC
Q 010784          260 PIKLMSVAGHKSFLLVTISK--DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS--GSSVVTIDLRTM  335 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~  335 (501)
                      ....+.+++ ++.++++.+.  ++.|.++|+.+++.+......    .......+...++.+++++  .+.+.++|..+.
T Consensus        22 f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~----~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           22 FTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMD----DSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             CEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECC----TTCCEEEEEEETTEEEEEETTCSEEEEEETTTT
T ss_pred             CcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecC----CCcceEEEEEeCCEEEEEEecCCEEEEEECCCC
Confidence            357899986 4655555543  689999999999876543321    1112234555677888887  458999999999


Q ss_pred             ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc--c---cCeEEEEecCCeEEEEe
Q 010784          336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH--V---GSVTQLHMDPYKIVTGG  409 (501)
Q Consensus       336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h--~---~~v~~l~~~~~~~l~~g  409 (501)
                      +.+.++......  ...+++||+.++++..++ |.++|..+.+..      ..+.--  .   ..++.+.+...++++..
T Consensus        97 ~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~------~~I~Vg~~~~p~~~~nele~~dg~lyvn~  168 (266)
T 2iwa_A           97 SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLI------KKHNVKYNGHRVIRLNELEYINGEVWANI  168 (266)
T ss_dssp             EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEE------EEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred             cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEE------EEEEECCCCcccccceeEEEECCEEEEec
Confidence            998887643111  233455766665555455 999999886543      333321  1   13677888844777777


Q ss_pred             cCCCcEEEEeCCCcccccccccCC--------CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          410 RDDLRINIWETDTGMLANSLLCNY--------PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       410 s~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      ..++.|.+.|..+++.+.++....        ........+.++|+|+++.+++++. ..+.+.+.++....
T Consensus       169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk-~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK-LWPKLFEIKLHLVR  239 (266)
T ss_dssp             TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET-TCSEEEEEEEEECC
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC-CCCeEEEEEEeccc
Confidence            678899999999999988885321        0011235689999999876666654 56888888887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.82  E-value=5.5e-07  Score=77.18  Aligned_cols=182  Identities=7%  Similarity=-0.036  Sum_probs=126.1

Q ss_pred             ceeEEEEeecCCeEEEEEeCCC--eEEEEECCCCccccceecccceecCCCc--eeeecCCCeEEEEe--CCcEEEEEcC
Q 010784          260 PIKLMSVAGHKSFLLVTISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVP--VDMKCHESMLYIAS--GSSVVTIDLR  333 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~i~~~d~~  333 (501)
                      ....+.|+  ++.++.+.+.+|  .|+++|+.+++.+....      .....  ..+...++.+++++  .+.+.++|..
T Consensus        44 ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~------l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           44 FTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIE------LGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             EEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEE------CCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             ccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEe------cCCccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence            35788887  567777777766  89999999997765442      22333  33566778888887  5689999999


Q ss_pred             CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC----cc-cCeEEEEecCCeEEE
Q 010784          334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG----HV-GSVTQLHMDPYKIVT  407 (501)
Q Consensus       334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~----h~-~~v~~l~~~~~~~l~  407 (501)
                      +.+.+.++...... ..+  ++++..|+.+.... |.++|..+.+..      .++..    .. ..++.+.+...++++
T Consensus       116 t~~~~~ti~~~~eG-~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~------~~I~V~~~g~~~~~lNELe~~~G~lya  186 (262)
T 3nol_A          116 NLRQVRSFNYDGEG-WGL--THNDQYLIMSDGTPVLRFLDPESLTPV------RTITVTAHGEELPELNELEWVDGEIFA  186 (262)
T ss_dssp             TCCEEEEEECSSCC-CCE--EECSSCEEECCSSSEEEEECTTTCSEE------EEEECEETTEECCCEEEEEEETTEEEE
T ss_pred             cCcEEEEEECCCCc-eEE--ecCCCEEEEECCCCeEEEEcCCCCeEE------EEEEeccCCccccccceeEEECCEEEE
Confidence            99999888753221 233  34666555555444 999999987654      33322    11 335567777457777


Q ss_pred             EecCCCcEEEEeCCCcccccccccCCC-------CCCCcceeeeEeeccccEEEEeec
Q 010784          408 GGRDDLRINIWETDTGMLANSLLCNYP-------EEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       408 ~gs~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      ..-.+..|.+.|..+++.+..+.....       .......+.++|+|+++.|++.+.
T Consensus       187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            776788999999999999888754311       111345689999999888877764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.77  E-value=6.6e-06  Score=71.45  Aligned_cols=191  Identities=10%  Similarity=0.018  Sum_probs=131.3

Q ss_pred             eEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceeeccC-CCCceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784          209 VSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKATLYG-HEKPIKLMSVAGHKSFLLVTISKDSKVRV  285 (501)
Q Consensus       209 v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~s~s~dg~v~v  285 (501)
                      ...+.|+    +++.++++.+.  ++.|++.|+.+++.      +..+.- .......+.+.  ++.+.++.-.++.+.+
T Consensus        23 ~~Gl~~~----~dg~Lyvstg~~~~s~v~~iD~~tg~v------~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~v   90 (266)
T 2iwa_A           23 TQGLVYA----ENDTLFESTGLYGRSSVRQVALQTGKV------ENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFI   90 (266)
T ss_dssp             EEEEEEC----STTEEEEEECSTTTCEEEEEETTTCCE------EEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEE
T ss_pred             cccEEEe----CCCeEEEECCCCCCCEEEEEECCCCCE------EEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEE
Confidence            5789986    55655555443  57999999999874      444321 11222345554  4566666667899999


Q ss_pred             EECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeeccCC-----CcEEEEEEcCCCcE
Q 010784          286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAICK-----PILHSFSIMPSKSL  359 (501)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~  359 (501)
                      +|..+.+.+..+...     ....+.+..++..++++.++ .+.++|..+.+.+..+....     ..++.+.+. ++.+
T Consensus        91 iD~~t~~v~~~i~~g-----~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           91 YDRRTLSNIKNFTHQ-----MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             EETTTTEEEEEEECC-----SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EECCCCcEEEEEECC-----CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence            999988765543221     14456677777888877654 89999999988877666321     236788887 7766


Q ss_pred             EEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-------------ccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc
Q 010784          360 ICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-------------VGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       360 l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-------------~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~  423 (501)
                      ++....+. |.+.|..+++..      ..+...             ....+.|+++|+  ++++++...+.|.+.++...
T Consensus       165 yvn~~~~~~V~vID~~tg~V~------~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLL------GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEE------EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEecCCCCeEEEEECCCCcEE------EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            66665555 999999998754      333211             135689999998  89999988999999988654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.77  E-value=9e-06  Score=71.86  Aligned_cols=219  Identities=12%  Similarity=0.015  Sum_probs=138.7

Q ss_pred             CCCceEEeeCC-cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784          111 KPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS  189 (501)
Q Consensus       111 ~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  189 (501)
                      ..+..++++++ +.++++....+.|.+++...+ .....+.........+++.+.            .+.++++-...+.
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~p~~ia~d~~------------~~~lyv~d~~~~~  102 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG-EPTTIIRQDLGSPEGIALDHL------------GRTIFWTDSQLDR  102 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC-CCEEEECTTCCCEEEEEEETT------------TTEEEEEETTTTE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCC-CcEEEEECCCCCccEEEEEec------------CCeEEEEECCCCE
Confidence            34789999984 566666667789999998753 333333333346788999872            2455566666788


Q ss_pred             eEEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeC---CCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          190 IRLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGE---DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       190 i~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      |.+++ .+.....+. ........+++.    +++..|+.+..   .+.|..++++....      .......-.....+
T Consensus       103 I~~~~~~g~~~~~~~~~~~~~P~~i~vd----~~~g~lyv~~~~~~~~~I~~~~~dg~~~------~~~~~~~~~~P~gi  172 (267)
T 1npe_A          103 IEVAKMDGTQRRVLFDTGLVNPRGIVTD----PVRGNLYWTDWNRDNPKIETSHMDGTNR------RILAQDNLGLPNGL  172 (267)
T ss_dssp             EEEEETTSCSCEEEECSSCSSEEEEEEE----TTTTEEEEEECCSSSCEEEEEETTSCCC------EEEECTTCSCEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCCccEEEEe----eCCCEEEEEECCCCCcEEEEEecCCCCc------EEEEECCCCCCcEE
Confidence            99988 443333332 122456788886    65555554443   46888888765331      11111223456789


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEeeec
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMTPA  342 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~  342 (501)
                      ++++.++.++++-...+.|.++|.........      ......+..+....+.++++..  +.|..+|..+++.+..+.
T Consensus       173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~------~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV------LEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTEEEEEEE------EECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEcCCCCEEEEEECCCCEEEEEecCCCceEEE------ecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            99975566667777788999999976432111      1123345666666777888764  489999999998887776


Q ss_pred             cCC-CcEEEEEEcCCCc
Q 010784          343 ICK-PILHSFSIMPSKS  358 (501)
Q Consensus       343 ~~~-~~v~~v~~~~~~~  358 (501)
                      ... .....+++.|++.
T Consensus       247 ~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          247 PHKQTRLYGITIALSQC  263 (267)
T ss_dssp             CSSCCCCCCEEEECSCC
T ss_pred             cccccccceeeecCccC
Confidence            433 2467788887754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.76  E-value=9.4e-07  Score=75.72  Aligned_cols=182  Identities=8%  Similarity=-0.025  Sum_probs=126.9

Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe--CCcEEEEEcCCCce
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS--GSSVVTIDLRTMQK  337 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~  337 (501)
                      ....+.|+  ++.++++.+.+|.|+++|+.+++.+... .    ........+...++.+++++  ++.+.++|..+.+.
T Consensus        56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l----~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~  128 (268)
T 3nok_A           56 FTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R----LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR  128 (268)
T ss_dssp             CEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E----CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE
T ss_pred             ccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C----CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE
Confidence            35788886  5788888889999999999999876544 1    11112233667778888887  56899999999999


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC--cc---cCeEEEEecCCeEEEEecC
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG--HV---GSVTQLHMDPYKIVTGGRD  411 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~~~~~~l~~gs~  411 (501)
                      +.++..... -..++  ++++.|+.+..+. |.++|..+.+..      .++.-  +.   ..++.+.|...++++..-.
T Consensus       129 ~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~------~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~  199 (268)
T 3nok_A          129 ERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALV------GAVQVKLRGQPVELINELECANGVIYANIWH  199 (268)
T ss_dssp             EEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEE------EEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred             EEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEE------EEEEeCCCCcccccccccEEeCCEEEEEECC
Confidence            988875322 23444  4666666665444 999999987654      33322  11   2456777775577777767


Q ss_pred             CCcEEEEeCCCcccccccccCC--------CCCCCcceeeeEeeccccEEEEee
Q 010784          412 DLRINIWETDTGMLANSLLCNY--------PEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       412 dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      +..|.+.|..+++.+..+....        ........++++++|+++.|++.+
T Consensus       200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            8899999999999988875431        011234578999999877666665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.76  E-value=2.9e-07  Score=84.91  Aligned_cols=224  Identities=9%  Similarity=0.011  Sum_probs=129.9

Q ss_pred             cceeEEEeeccCcCcccccCCCCcCcEEEEee--CCCceEEec--CCceeeec-------cCCCCceEEEEeeecCCCCC
Q 010784          154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSS--CDHSIRLWW--KGSCQRCF-------KGHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~vwd--~~~~~~~~-------~~h~~~v~~l~~s~~~~~~~  222 (501)
                      ..+..+++++             +|+++++..  .++.++||.  .++ +..+       ..|...+..+++.    +++
T Consensus        17 ~~p~~va~~~-------------~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d----~~g   78 (343)
T 2qe8_A           17 LAPGNITLTP-------------DGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSD----GNG   78 (343)
T ss_dssp             SCEEEEEECT-------------TSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEEC----SSS
T ss_pred             CCcceEEECC-------------CCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEc----CCC
Confidence            6788999998             788888853  234355554  343 2222       2355678999995    777


Q ss_pred             CEEEEeeC-----CCcEEEEeccCCCccccccceeecc------CCCCceeEEEEeecCCeEEEEEe---CCCeEEEEEC
Q 010784          223 KILASGGE-----DATVRLWSLSSSGKRGQQALKATLY------GHEKPIKLMSVAGHKSFLLVTIS---KDSKVRVWDT  288 (501)
Q Consensus       223 ~~l~sg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~l~s~s---~dg~v~vwd~  288 (501)
                      +++++-..     ++.|.+||+.+++.      +..+.      .+...+..+++.+.++..+++..   .++.|.+||+
T Consensus        79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~------~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~  152 (343)
T 2qe8_A           79 IVWMLDNGNQSKSVPKLVAWDTLNNQL------SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDL  152 (343)
T ss_dssp             EEEEEECHHHHTSCCEEEEEETTTTEE------EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEET
T ss_pred             cEEEEcCCCCcCCCCeEEEEECCCCeE------EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEEC
Confidence            76665433     57899999987652      22222      22345688899875566666665   6788999998


Q ss_pred             CCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE-EEEEcCCCcEEEEEcCCc
Q 010784          289 STSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH-SFSIMPSKSLICTGGIGK  367 (501)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~d~  367 (501)
                      .+++..+                                            .+..|..... ...+.++|..+.+.+.++
T Consensus       153 ~~g~~~r--------------------------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~g  188 (343)
T 2qe8_A          153 QTGLAAR--------------------------------------------VLQGYPGIAPEDIDLVIDGVPVQIGQPDG  188 (343)
T ss_dssp             TTCCEEE--------------------------------------------ECTTCTTTSCCSCCCEETTEECBEECTTS
T ss_pred             CCCCEEE--------------------------------------------EecCCCcccccccceeECCEEEEeccCCC
Confidence            8764311                                            1111111000 022233555555544444


Q ss_pred             -EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC-cEEEEeCCC---c-----ccccccccCCCCC
Q 010784          368 -AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL-RINIWETDT---G-----MLANSLLCNYPEE  436 (501)
Q Consensus       368 -i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg-~i~iwd~~~---~-----~~~~~~~~~~~~~  436 (501)
                       ++.|.                    ..++.|+++|+ +.+..+..++ .+..++...   +     +....+..   .+
T Consensus       189 ~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~g  245 (343)
T 2qe8_A          189 TVIRPH--------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER---YS  245 (343)
T ss_dssp             CEECCC--------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE---EE
T ss_pred             ceecee--------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe---cc
Confidence             43221                    23678999999 5444444444 455444321   1     11111110   01


Q ss_pred             CCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          437 ADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       437 ~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +......++++++|.++++..  ..+.|.+|+..
T Consensus       246 ~~g~pdgia~d~~G~l~va~~--~~~~V~~~d~~  277 (343)
T 2qe8_A          246 EKPICDGISIDKDHNIYVGDL--AHSAIGVITSA  277 (343)
T ss_dssp             ECCSCSCEEECTTCCEEEEEG--GGTEEEEEETT
T ss_pred             cCCCCceEEECCCCCEEEEcc--CCCeEEEEECC
Confidence            223456799999999888877  56899999973

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=0.0001  Score=76.01  Aligned_cols=316  Identities=11%  Similarity=0.014  Sum_probs=183.0

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc-------CCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD-------HKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-------h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      .|.++..+++|.+.+....  -+.++|..++ +.......       ....|.++...+             +|. |..|
T Consensus       212 ~i~~i~~d~~g~lwigt~~--Gl~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~-------------~g~-lWig  274 (781)
T 3v9f_A          212 DVRCIYKDTNGNIWIGTSK--GLALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLK-------------DNK-LWIA  274 (781)
T ss_dssp             SEEEEEECTTCCEEEEETT--EEEEEETTTT-EEEC-----------CCCCEEEEEECT-------------TSE-EEEE
T ss_pred             ceeEEEEcCCCCEEEEeCC--cHheECCCCC-cEEEEEcCCCccccccCceEEEEEECC-------------CCC-EEEE
Confidence            4788888888866654433  4777887653 22221111       235688888766             555 4455


Q ss_pred             eCCCceEEec-CCceeeecc---------------CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784          185 SCDHSIRLWW-KGSCQRCFK---------------GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       185 ~~dg~i~vwd-~~~~~~~~~---------------~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~  248 (501)
                      ...+-|.++| .......+.               -....|.++..    +.+| .|..|+.++-|..++......    
T Consensus       275 t~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~----D~~g-~lWigt~~~Gl~~~~~~~~~~----  345 (781)
T 3v9f_A          275 TELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ----DSFN-NIWIGTWGGGINFISNAPPTF----  345 (781)
T ss_dssp             ESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE----CSSC-CEEEEEBSSCEEEECSSCCSC----
T ss_pred             eCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE----eCCC-CEEEEecCCeEEEeCCCCCcc----
Confidence            5545577787 222211111               13456888876    3555 466677777888898776532    


Q ss_pred             cceeecc----------CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC-CC
Q 010784          249 ALKATLY----------GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH-ES  317 (501)
Q Consensus       249 ~~~~~~~----------~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  317 (501)
                         ..+.          .....|.++.... ++ .|..|+.++-|..||..++..... . .........+.++..+ ..
T Consensus       346 ---~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~~~-~-~~~~~~~~~v~~i~~d~~g  418 (781)
T 3v9f_A          346 ---HTWSYSPTQMNESSLSNKVVSSVCDDG-QG-KLWIGTDGGGINVFENGKRVAIYN-K-ENRELLSNSVLCSLKDSEG  418 (781)
T ss_dssp             ---EEEC----CCCSSCCSSSCEEEEEECT-TS-CEEEEEBSSCEEEEETTEEEEECC-------CCCSBEEEEEECTTS
T ss_pred             ---eeeccCccccccCCCCCcceEEEEEcC-CC-CEEEEeCCCcEEEEECCCCeEEEc-c-CCCCCCCcceEEEEECCCC
Confidence               1111          1235688887763 34 466677677799999876532211 0 0001122345566554 45


Q ss_pred             eEEEEeC-CcEEEEEcCCCceEeeec--cCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCccccc---Cc
Q 010784          318 MLYIASG-SSVVTIDLRTMQKVMTPA--ICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELD---GH  391 (501)
Q Consensus       318 ~~~~~~~-~~i~~~d~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~---~h  391 (501)
                      .+++++. +.+..+|..+++......  .....|.++...+++.+.+... ++|..+|..+++..    ......   ..
T Consensus       419 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~----~~~~~~~~~~~  493 (781)
T 3v9f_A          419 NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI----HHYDTSNSQLL  493 (781)
T ss_dssp             CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC----EEECTTTSSCS
T ss_pred             CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE----ecccCcccccc
Confidence            6777775 588889887765433221  2356799999988887666554 66999998775432    111111   11


Q ss_pred             ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          392 VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       392 ~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ...|.++..+++ .+.++. .++-|..||..+++.. .+... ..-....|.++...++|.+.++.   ..|.|..||..
T Consensus       494 ~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~~-~~~~~-~~l~~~~i~~i~~d~~g~lWi~T---~~Glv~~~d~~  567 (781)
T 3v9f_A          494 ENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLVR-KFNQY-EGFCSNTINQIYRSSKGQMWLAT---GEGLVCFPSAR  567 (781)
T ss_dssp             CSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEEE-EECTT-TTCSCSCEEEEEECTTSCEEEEE---TTEEEEESCTT
T ss_pred             cceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeEE-EccCC-CCCCCCeeEEEEECCCCCEEEEE---CCCceEEECCC
Confidence            357899999888 776664 4344888988765432 23211 11234568888888888866654   33654666644


Q ss_pred             C
Q 010784          471 N  471 (501)
Q Consensus       471 ~  471 (501)
                      .
T Consensus       568 ~  568 (781)
T 3v9f_A          568 N  568 (781)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.73  E-value=3.6e-05  Score=79.38  Aligned_cols=308  Identities=9%  Similarity=-0.031  Sum_probs=180.4

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceec--------------ccCCcceeEEEeeccCcCcccccCCCCc
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL--------------SDHKARITCMRLFPLHETSLFRSEPQRT  177 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--------------~~h~~~V~~~~~~~~~~~~~~~~~~~~~  177 (501)
                      .|.++..+++|.+.+.... +-+.+++..++ ......              .-....|.++...+             +
T Consensus       259 ~i~~i~~d~~g~lWigt~~-~Gl~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-------------~  323 (781)
T 3v9f_A          259 YIFSIKQLKDNKLWIATEL-NGIMILDLQQN-QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-------------F  323 (781)
T ss_dssp             CEEEEEECTTSEEEEEESS-SCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECS-------------S
T ss_pred             eEEEEEECCCCCEEEEeCC-CCeEEECCCCC-eeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-------------C
Confidence            4888888888887764432 34566776653 221111              11345688887766             5


Q ss_pred             CcEEEEeeCCCceEEec-CCceeeecc----------CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc
Q 010784          178 ENVLVTSSCDHSIRLWW-KGSCQRCFK----------GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG  246 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd-~~~~~~~~~----------~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  246 (501)
                      |+ |..|..++-|..++ .......+.          .....|.++..    +.++. |..|+.++-|..+|..++..  
T Consensus       324 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~----d~~g~-lWigt~~~Gl~~~~~~~~~~--  395 (781)
T 3v9f_A          324 NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCD----DGQGK-LWIGTDGGGINVFENGKRVA--  395 (781)
T ss_dssp             CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEE----CTTSC-EEEEEBSSCEEEEETTEEEE--
T ss_pred             CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEE----cCCCC-EEEEeCCCcEEEEECCCCeE--
Confidence            55 55566667788887 322222221          12356888876    24454 55667667788898765431  


Q ss_pred             ccccee-eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC-CCeEEEEeC
Q 010784          247 QQALKA-TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH-ESMLYIASG  324 (501)
Q Consensus       247 ~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  324 (501)
                        .... ........|.++...+ ++ .|..|+.++-|..+|..+++.......   ......+.++..+ ...+++++.
T Consensus       396 --~~~~~~~~~~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~---~~~~~~v~~i~~d~~g~lwigt~  468 (781)
T 3v9f_A          396 --IYNKENRELLSNSVLCSLKDS-EG-NLWFGTYLGNISYYNTRLKKFQIIELE---KNELLDVRVFYEDKNKKIWIGTH  468 (781)
T ss_dssp             --ECC-----CCCSBEEEEEECT-TS-CEEEEETTEEEEEECSSSCEEEECCST---TTCCCCEEEEEECTTSEEEEEET
T ss_pred             --EEccCCCCCCCcceEEEEECC-CC-CEEEEeccCCEEEEcCCCCcEEEeccC---CCCCCeEEEEEECCCCCEEEEEC
Confidence              0000 0012345688887763 44 455677777799999877643211100   0112344555554 456777777


Q ss_pred             CcEEEEEcCCCceEeeeccC-----CCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCccccc-CcccCeEEE
Q 010784          325 SSVVTIDLRTMQKVMTPAIC-----KPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELD-GHVGSVTQL  398 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l  398 (501)
                      +.+..+|..+++........     ...|.++...++|.+.+....+++..+|..+.+..    ...... .....|.++
T Consensus       469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~----~~~~~~~l~~~~i~~i  544 (781)
T 3v9f_A          469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVR----KFNQYEGFCSNTINQI  544 (781)
T ss_dssp             TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEE----EECTTTTCSCSCEEEE
T ss_pred             CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEE----EccCCCCCCCCeeEEE
Confidence            88999998876543322211     46789999999998777665566888998764321    000001 124578999


Q ss_pred             EecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784          399 HMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA  456 (501)
Q Consensus       399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  456 (501)
                      ..+++ .+.++. .+|.|..||..+++. ..+.... .-....|.++...++|.+.+++
T Consensus       545 ~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~-gl~~~~i~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          545 YRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKE-GLPNTHIRAISEDKNGNIWAST  600 (781)
T ss_dssp             EECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGG-TCSCCCCCEEEECSSSCEEEEC
T ss_pred             EECCCCCEEEEE-CCCceEEECCCCCcE-EEccccC-CCCCceEEEEEECCCCCEEEEc
Confidence            99888 776664 567558899876653 2222111 1123457788888888877765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.70  E-value=6.7e-06  Score=69.88  Aligned_cols=183  Identities=11%  Similarity=0.017  Sum_probs=124.3

Q ss_pred             CceeEEEEeecCCeEEEEEeCCC--eEEEEECCCCccccceecccceecCCCc--eeeecCCCeEEEEe--CCcEEEEEc
Q 010784          259 KPIKLMSVAGHKSFLLVTISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVP--VDMKCHESMLYIAS--GSSVVTIDL  332 (501)
Q Consensus       259 ~~v~~l~~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~i~~~d~  332 (501)
                      .....+.|+  ++.++.+.+.+|  .|+.+|+.+++.+....      .+...  ..+...++.++.++  .+.+.++|.
T Consensus        21 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~------l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           21 AFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAE------VPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             CCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEE------CCTTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred             cccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEe------CCCCcceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence            456788987  466777777654  89999999997765432      22222  34455677888887  468999999


Q ss_pred             CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC--cc---cCeEEEEecCCeEE
Q 010784          333 RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG--HV---GSVTQLHMDPYKIV  406 (501)
Q Consensus       333 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~~~~~~l  406 (501)
                      .+.+.+.++...... ..++  +++..|+.+..+. |.++|..+.+..      .++.-  +.   ..++.+.+...+++
T Consensus        93 ~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~------~~I~V~~~g~~~~~lNeLe~~~G~ly  163 (243)
T 3mbr_X           93 ATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQV------GSIKVTAGGRPLDNLNELEWVNGELL  163 (243)
T ss_dssp             TTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEE------EEEECEETTEECCCEEEEEEETTEEE
T ss_pred             CcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEE------EEEEEccCCcccccceeeEEeCCEEE
Confidence            999999888753322 3444  4555554444344 999999986654      33332  11   34567777755777


Q ss_pred             EEecCCCcEEEEeCCCcccccccccCCC--------CCCCcceeeeEeeccccEEEEeec
Q 010784          407 TGGRDDLRINIWETDTGMLANSLLCNYP--------EEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       407 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      +..-.+..|.+.|..+|+.+..+.....        .......++++++|+++.|++.+.
T Consensus       164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            7766788999999999999888754311        012345689999998877777663

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.70  E-value=7.6e-06  Score=70.14  Aligned_cols=191  Identities=14%  Similarity=0.142  Sum_probs=123.2

Q ss_pred             eeeeccCCCC--ceEEEEeeecCCCCCCEEEEeeCCC--cEEEEeccCCCccccccceeeccCCCCc-eeEEEEeecCCe
Q 010784          198 CQRCFKGHNG--PVSTLSDKLLGDGSGKILASGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKP-IKLMSVAGHKSF  272 (501)
Q Consensus       198 ~~~~~~~h~~--~v~~l~~s~~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~  272 (501)
                      .+.++. |..  -...+.|+     ++.++.+.+.+|  .|+++|+.+++.      +..+...... -..+.+.  ++.
T Consensus        33 vv~~~p-hd~~~ftqGL~~~-----~~~LyestG~~g~S~v~~vD~~Tgkv------~~~~~l~~~~FgeGit~~--g~~   98 (262)
T 3nol_A           33 IVHSYP-HDTKAFTEGFFYR-----NGYFYESTGLNGRSSIRKVDIESGKT------LQQIELGKRYFGEGISDW--KDK   98 (262)
T ss_dssp             EEEEEE-CCTTCEEEEEEEE-----TTEEEEEEEETTEEEEEEECTTTCCE------EEEEECCTTCCEEEEEEE--TTE
T ss_pred             EEEEec-CCCCcccceEEEE-----CCEEEEECCCCCCceEEEEECCCCcE------EEEEecCCccceeEEEEe--CCE
Confidence            344553 333  34678884     566777777766  899999999874      4444332221 1234443  556


Q ss_pred             EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeeccC--C---C
Q 010784          273 LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAIC--K---P  346 (501)
Q Consensus       273 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~--~---~  346 (501)
                      +.+..-.++.+.+||..+.+.+..+.      ..+..+.+..+...++++.++ .+.++|..+.+.+.++...  .   .
T Consensus        99 ly~ltw~~~~v~v~D~~t~~~~~ti~------~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~  172 (262)
T 3nol_A           99 IVGLTWKNGLGFVWNIRNLRQVRSFN------YDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELP  172 (262)
T ss_dssp             EEEEESSSSEEEEEETTTCCEEEEEE------CSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECC
T ss_pred             EEEEEeeCCEEEEEECccCcEEEEEE------CCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccc
Confidence            66666678999999999987655443      334556677777777777654 7999999999888776542  1   3


Q ss_pred             cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCC--cc-c---ccCcccCeEEEEecCC--eEEEEe
Q 010784          347 ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQP--MA-E---LDGHVGSVTQLHMDPY--KIVTGG  409 (501)
Q Consensus       347 ~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~--~~-~---~~~h~~~v~~l~~~~~--~~l~~g  409 (501)
                      .++.+.+. +|++++..-.+. |.+.|..+++.......  +. .   ...-....+.|+++|+  +++++|
T Consensus       173 ~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          173 ELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            35567776 777666665555 99999999875411000  00 0   0011235689999997  888887

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.69  E-value=3.1e-06  Score=78.43  Aligned_cols=201  Identities=10%  Similarity=0.064  Sum_probs=122.2

Q ss_pred             CCcEEE-eecCCeeeEEEEecccc---cccceecc------c-CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC-
Q 010784          120 NNDIFS-TQGSSIQNIKIDNFLSE---SYYRATLS------D-HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-  187 (501)
Q Consensus       120 ~~~~~~-~~g~~d~~i~vw~~~~~---~~~~~~~~------~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-  187 (501)
                      .+++++ +.|..+..|.|.|+.+.   .++.+++.      . -...-..+..+|             +| +++++..+ 
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-------------dG-i~Vs~~g~~  158 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-------------DA-IYISALGNE  158 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-------------SC-EEEEEEEET
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-------------Ce-EEEEcCCCc
Confidence            666665 56777899999998653   13444442      1 112345566777             77 77776665 


Q ss_pred             -----CceEEec--CCceeeeccCCCCc---eEEEEeeecCCCCCCEEEEee-------------------CCCcEEEEe
Q 010784          188 -----HSIRLWW--KGSCQRCFKGHNGP---VSTLSDKLLGDGSGKILASGG-------------------EDATVRLWS  238 (501)
Q Consensus       188 -----g~i~vwd--~~~~~~~~~~h~~~---v~~l~~s~~~~~~~~~l~sg~-------------------~dg~i~iwd  238 (501)
                           |.|.+.|  +.+.+.++.....+   -..+.|+    ++++.+++..                   .+.+|.+||
T Consensus       159 ~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~----p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D  234 (462)
T 2ece_A          159 EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWN----LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD  234 (462)
T ss_dssp             TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEE----TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred             CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEEC----CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence                 7899999  57777777532222   2346666    7888888874                   368999999


Q ss_pred             ccCCCccccccceeeccCC--CCceeEEEE--eecCCeEEEEE-e-----CCCeEEEEECCCCccccceecccceecCCC
Q 010784          239 LSSSGKRGQQALKATLYGH--EKPIKLMSV--AGHKSFLLVTI-S-----KDSKVRVWDTSTSSAVRSSCCVGMTSVPGV  308 (501)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~--~~~v~~l~~--~~~~~~~l~s~-s-----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  308 (501)
                      +.+++      .+.++..-  ......+.|  +| ++++++.+ -     .+++|.+|....++.    .          
T Consensus       235 ~~~~k------~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----~----------  293 (462)
T 2ece_A          235 LRKRK------RIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKW----N----------  293 (462)
T ss_dssp             TTTTE------EEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEE----E----------
T ss_pred             CCCCc------EeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCce----e----------
Confidence            99864      35555432  123445656  77 45555444 4     677888887654321    1          


Q ss_pred             ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec-------cCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCC
Q 010784          309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-------ICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRS  376 (501)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~  376 (501)
                                       .+.+.|+.+.+....+.       +-......|.+++||++|.++..+.  |.+||+...
T Consensus       294 -----------------~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          294 -----------------AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             -----------------EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred             -----------------EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence                             11222222221111110       0024467899999999999888543  999998643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.69  E-value=3.9e-06  Score=71.94  Aligned_cols=190  Identities=12%  Similarity=0.073  Sum_probs=125.4

Q ss_pred             eeeeccCCC--CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784          198 CQRCFKGHN--GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV  275 (501)
Q Consensus       198 ~~~~~~~h~--~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  275 (501)
                      .+.++. |.  .....+.|+     ++.++++.+.+|.|+++|+.+++.      +..+......-..+.+.  ++.+.+
T Consensus        45 Vv~~~p-hd~~~ftqGL~~~-----~~~Ly~stG~~g~v~~iD~~Tgkv------~~~~l~~~~FgeGit~~--g~~Ly~  110 (268)
T 3nok_A           45 IIREYP-HATNAFTQGLVFH-----QGHFFESTGHQGTLRQLSLESAQP------VWMERLGNIFAEGLASD--GERLYQ  110 (268)
T ss_dssp             EEEEEE-CCTTCCEEEEEEE-----TTEEEEEETTTTEEEECCSSCSSC------SEEEECTTCCEEEEEEC--SSCEEE
T ss_pred             EEEEEc-CCCccccceEEEE-----CCEEEEEcCCCCEEEEEECCCCcE------EeEECCCCcceeEEEEe--CCEEEE
Confidence            444553 33  334678885     467788888889999999999874      33331111111234543  556666


Q ss_pred             EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeeccCC-----CcEE
Q 010784          276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAICK-----PILH  349 (501)
Q Consensus       276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~-----~~v~  349 (501)
                      ..-.++.+.+||..+.+.+..+.      ..+..+.+..+...++++.++ .+.++|..+.+.+.++....     ..++
T Consensus       111 ltw~~~~v~V~D~~Tl~~~~ti~------~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN  184 (268)
T 3nok_A          111 LTWTEGLLFTWSGMPPQRERTTR------YSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN  184 (268)
T ss_dssp             EESSSCEEEEEETTTTEEEEEEE------CSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             EEccCCEEEEEECCcCcEEEEEe------CCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence            66678999999999987665543      334556777778888887754 89999999998887665422     2456


Q ss_pred             EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc--------cCcccCeEEEEecCC--eEEEEe
Q 010784          350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL--------DGHVGSVTQLHMDPY--KIVTGG  409 (501)
Q Consensus       350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~--~~l~~g  409 (501)
                      .+.|. +|++++....+. |.+.|..+++....... ..+        ..-....+.|+++|+  +++++|
T Consensus       185 eLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl-~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          185 ELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA-SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC-HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC-CCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            67776 777666665555 99999999875411000 000        111246789999997  888887

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.68  E-value=3.7e-06  Score=84.61  Aligned_cols=274  Identities=11%  Similarity=0.055  Sum_probs=156.9

Q ss_pred             CcEEEEeeCCCceEEec--CCceeeeccCCCCc----------e-EEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784          178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGP----------V-STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK  244 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~----------v-~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~  244 (501)
                      +..++.++.++.|.-+|  +|+.+-.+......          + ..+.+      .+..++.++.|+.|..+|..+++.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~v~~~dg~l~alD~~tG~~  139 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL------WGDKVYVGTLDGRLIALDAKTGKA  139 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE------EBTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE------ECCEEEEEcCCCEEEEEECCCCCE
Confidence            45666667788888888  67666554322110          1 11222      245788888999999999999875


Q ss_pred             cccccceeeccCC----CCceeE-EEEeecCCeEEEEEeC------CCeEEEEECCCCccccceecccceec--------
Q 010784          245 RGQQALKATLYGH----EKPIKL-MSVAGHKSFLLVTISK------DSKVRVWDTSTSSAVRSSCCVGMTSV--------  305 (501)
Q Consensus       245 ~~~~~~~~~~~~~----~~~v~~-l~~~~~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~~--------  305 (501)
                            +-.+...    ...+.. ..+.  ++. ++.+..      +|.|..+|.++++.+-..........        
T Consensus       140 ------~W~~~~~~~~~~~~~~~~P~v~--~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~  210 (668)
T 1kv9_A          140 ------IWSQQTTDPAKPYSITGAPRVV--KGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL  210 (668)
T ss_dssp             ------EEEEECSCTTSSCBCCSCCEEE--TTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred             ------eeeeccCCCCCcceecCCCEEE--CCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence                  2222211    011111 1111  444 444432      58999999999987655432110000        


Q ss_pred             -----------------CCC---ceeeecCCCeEEEEeCC--------------------cEEEEEcCCCceEeeecc--
Q 010784          306 -----------------PGV---PVDMKCHESMLYIASGS--------------------SVVTIDLRTMQKVMTPAI--  343 (501)
Q Consensus       306 -----------------~~~---~~~~~~~~~~~~~~~~~--------------------~i~~~d~~~~~~~~~~~~--  343 (501)
                                       .+.   ...+....+.+++.+++                    .|..+|.++++.+..++.  
T Consensus       211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~  290 (668)
T 1kv9_A          211 REAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP  290 (668)
T ss_dssp             HHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST
T ss_pred             ccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC
Confidence                             000   11222234566666543                    389999999999887764  


Q ss_pred             CC-------CcEEEEEEcCCCc---EEEEEcCCc-EEEEecCCCCCCCCCCCc-----ccc---------------cC--
Q 010784          344 CK-------PILHSFSIMPSKS---LICTGGIGK-AMTWDIRRSQDAVKPQPM-----AEL---------------DG--  390 (501)
Q Consensus       344 ~~-------~~v~~v~~~~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~~-----~~~---------------~~--  390 (501)
                      |.       .+.....+..+|+   .++.++.++ ++++|..+++.+......     ..+               .+  
T Consensus       291 ~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~  370 (668)
T 1kv9_A          291 GDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEP  370 (668)
T ss_dssp             TCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSC
T ss_pred             CccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCe
Confidence            22       2222223333665   688888888 999999998754100000     000               00  


Q ss_pred             ------ccc--CeEEEEecCC-eEEEE------------------------------------ecCCCcEEEEeCCCccc
Q 010784          391 ------HVG--SVTQLHMDPY-KIVTG------------------------------------GRDDLRINIWETDTGML  425 (501)
Q Consensus       391 ------h~~--~v~~l~~~~~-~~l~~------------------------------------gs~dg~i~iwd~~~~~~  425 (501)
                            ..+  .-..++++|+ .++..                                    ...+|.|..||+.+++.
T Consensus       371 ~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~  450 (668)
T 1kv9_A          371 IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA  450 (668)
T ss_dssp             EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE
T ss_pred             eEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE
Confidence                  000  0012567776 33221                                    12348899999999998


Q ss_pred             ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      +-+....      .......+...+.++++++  .+|.|+.||..+++.
T Consensus       451 ~W~~~~~------~~~~~~~~~t~gg~vf~g~--~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          451 AWKVPYP------THWNGGTLSTAGNLVFQGT--AAGQMHAYSADKGEA  491 (668)
T ss_dssp             EEEEEES------SSCCCCEEEETTTEEEEEC--TTSEEEEEETTTCCE
T ss_pred             EEEccCC------CCCcCceeEeCCCEEEEEC--CcccchhhhhhcChh
Confidence            8776422      2233445666788888887  679999999877664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.63  E-value=0.00031  Score=64.54  Aligned_cols=246  Identities=9%  Similarity=-0.028  Sum_probs=145.3

Q ss_pred             CCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784          110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS  189 (501)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  189 (501)
                      +...+|.+..++..++++-.  ..|+..++... .....+.+ ...+..++|.+.            ++.++++-...+.
T Consensus        33 ~d~~~C~~~~~~~~ll~~~~--~~I~~i~~~g~-~~~~~~~~-~~~~~~l~~d~~------------~~~ly~~D~~~~~   96 (349)
T 3v64_C           33 PDRRSCKALGPEPVLLFANR--IDIRQVLPHRS-EYTLLLNN-LENAIALDFHHR------------RELVFWSDVTLDR   96 (349)
T ss_dssp             TTSSCEEESSSCCEEEEECB--SCEEEECTTSC-CEEEEECS-CSCEEEEEEETT------------TTEEEEEETTTTE
T ss_pred             CCCCcccccccCceeEeecc--cceEEEeCCCC-eeEEeecC-CCceEEEEEecc------------ccEEEEEeccCCc
Confidence            34467777777554444332  34666666542 33333333 344789999873            4566666667788


Q ss_pred             eEEec-CCceeeec-cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784          190 IRLWW-KGSCQRCF-KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA  267 (501)
Q Consensus       190 i~vwd-~~~~~~~~-~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  267 (501)
                      |..++ .+.....+ .........+++.   ...+.++++-...+.|.+.+++....      ...+...-.....+++.
T Consensus        97 I~r~~~~g~~~~~~~~~~~~~p~glavd---~~~g~ly~~d~~~~~I~~~~~dG~~~------~~l~~~~l~~P~~iavd  167 (349)
T 3v64_C           97 ILRANLNGSNVEEVVSTGLESPGGLAVD---WVHDKLYWTDSGTSRIEVANLDGAHR------KVLLWQSLEKPRAIALH  167 (349)
T ss_dssp             EEEEETTSCSCEEEECSSCSCCCEEEEE---TTTTEEEEEETTTTEEEEEETTSCSC------EEEECTTCSCEEEEEEE
T ss_pred             eEEEecCCCCceEEEeCCCCCccEEEEe---cCCCeEEEEcCCCCeEEEEcCCCCce------EEEEeCCCCCcceEEEe
Confidence            88888 44333332 2222344567764   12455556666678899999876432      22222333456889999


Q ss_pred             ecCCeEEEEEeCC-CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC
Q 010784          268 GHKSFLLVTISKD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP  346 (501)
Q Consensus       268 ~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  346 (501)
                      |.++.++++-... +.|..+++......                                            ......-.
T Consensus       168 p~~g~ly~td~~~~~~I~r~~~dG~~~~--------------------------------------------~~~~~~~~  203 (349)
T 3v64_C          168 PMEGTIYWTDWGNTPRIEASSMDGSGRR--------------------------------------------IIADTHLF  203 (349)
T ss_dssp             TTTTEEEEEECSSSCEEEEEETTSCSCE--------------------------------------------ESCCSSCS
T ss_pred             cCcCeEEEeccCCCCEEEEEeCCCCCcE--------------------------------------------EEEECCCC
Confidence            8667666666555 77888777643210                                            00011123


Q ss_pred             cEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcc
Q 010784          347 ILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGM  424 (501)
Q Consensus       347 ~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~  424 (501)
                      ....++++|++..|..+. ..+ |..+|+......      ..+.........|++..+.++.+-...+.|..++..+|+
T Consensus       204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~------~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK------AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------EEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE------EEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCC
Confidence            467899998655554444 445 999998653211      112222345678888666777776788899999977787


Q ss_pred             cccccc
Q 010784          425 LANSLL  430 (501)
Q Consensus       425 ~~~~~~  430 (501)
                      .+..+.
T Consensus       278 ~~~~i~  283 (349)
T 3v64_C          278 NQEIIR  283 (349)
T ss_dssp             SCEEEE
T ss_pred             ccEEec
Confidence            766663

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.62  E-value=0.00019  Score=66.91  Aligned_cols=244  Identities=9%  Similarity=-0.030  Sum_probs=143.5

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      ..+|.+..+...++++..  ..|+..++... .....+. .......++|.+.            ++.++++-...+.|.
T Consensus        78 ~~~C~~~~~~~~l~~~~~--~~I~~i~~~~~-~~~~~~~-~~~~~~gl~~d~~------------~~~ly~~D~~~~~I~  141 (386)
T 3v65_B           78 RRSCKALGPEPVLLFANR--IDIRQVLPHRS-EYTLLLN-NLENAIALDFHHR------------RELVFWSDVTLDRIL  141 (386)
T ss_dssp             SSCEEECSSCCEEEEECB--SCEEEECTTSC-CCEEEEC-SCSCEEEEEEETT------------TTEEEEEETTTTEEE
T ss_pred             CCeECCccccceeEeecC--ccceeeccCCC-cEEEEec-CCCccEEEEEecC------------CCeEEEEeCCCCcEE
Confidence            456777666554444332  45666676642 3333333 3345788999873            456666666778898


Q ss_pred             Eec-CCceeeec-cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784          192 LWW-KGSCQRCF-KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH  269 (501)
Q Consensus       192 vwd-~~~~~~~~-~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  269 (501)
                      .++ .+.....+ .........+++.   ...+.++++-...+.|.+.+++....      ...+...-.....|++.|.
T Consensus       142 r~~~~g~~~~~~~~~~~~~p~glavd---~~~g~lY~~d~~~~~I~~~~~dg~~~------~~l~~~~l~~P~giavdp~  212 (386)
T 3v65_B          142 RANLNGSNVEEVVSTGLESPGGLAVD---WVHDKLYWTDSGTSRIEVANLDGAHR------KVLLWQSLEKPRAIALHPM  212 (386)
T ss_dssp             EEETTSCCEEEEECSSCSCCCCEEEE---TTTTEEEEEETTTTEEEECBTTSCSC------EEEECSSCSCEEEEEEETT
T ss_pred             EEecCCCCcEEEEeCCCCCccEEEEE---eCCCeEEEEcCCCCeEEEEeCCCCce------EEeecCCCCCCcEEEEEcC
Confidence            888 44433332 2222334566664   12455556656677888888875432      2222333345688899886


Q ss_pred             CCeEEEEEeCC-CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784          270 KSFLLVTISKD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL  348 (501)
Q Consensus       270 ~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v  348 (501)
                      ++.++++-... +.|..+++......                                            ......-...
T Consensus       213 ~g~ly~td~~~~~~I~r~~~dG~~~~--------------------------------------------~~~~~~~~~P  248 (386)
T 3v65_B          213 EGTIYWTDWGNTPRIEASSMDGSGRR--------------------------------------------IIADTHLFWP  248 (386)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCSCE--------------------------------------------EEECSSCSCE
T ss_pred             CCeEEEeccCCCCEEEEEeCCCCCcE--------------------------------------------EEEECCCCCe
Confidence            66666665555 67777776543110                                            0011112346


Q ss_pred             EEEEEcCCCcEEEEE-cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccc
Q 010784          349 HSFSIMPSKSLICTG-GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLA  426 (501)
Q Consensus       349 ~~v~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~  426 (501)
                      ..++++|++..|+.+ +... |..+|+......      ..+.........|++..+.++.+-...+.|..++..+|+.+
T Consensus       249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~------~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK------AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE------EEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             eeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE------EEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcce
Confidence            789999865554444 4445 999998643211      12222234567888866677777778889999997788777


Q ss_pred             cccc
Q 010784          427 NSLL  430 (501)
Q Consensus       427 ~~~~  430 (501)
                      ..+.
T Consensus       323 ~~i~  326 (386)
T 3v65_B          323 EIIR  326 (386)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            7764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.61  E-value=3.5e-06  Score=84.82  Aligned_cols=289  Identities=11%  Similarity=0.065  Sum_probs=157.6

Q ss_pred             cCCeeeEEEEecccccccceecccCCcce-----------eEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--
Q 010784          128 GSSIQNIKIDNFLSESYYRATLSDHKARI-----------TCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--  194 (501)
Q Consensus       128 g~~d~~i~vw~~~~~~~~~~~~~~h~~~V-----------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--  194 (501)
                      ++.++.+.-+|..+| +.+..+.......           ..+.+               .+..++.++.|+.|..+|  
T Consensus        72 ~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~v~~~dg~l~alD~~  135 (668)
T 1kv9_A           72 SMSWSRVIAVDAASG-KELWRYDPEVAKVKARTSCCDAVNRGVAL---------------WGDKVYVGTLDGRLIALDAK  135 (668)
T ss_dssp             EEGGGEEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE---------------EBTEEEEECTTSEEEEEETT
T ss_pred             ECCCCeEEEEECCCC-hhceEECCCCCccccccccccCCccceEE---------------ECCEEEEEcCCCEEEEEECC
Confidence            344678888998886 5554443322110           11122               356788888899999999  


Q ss_pred             CCceeeeccCCC----CceEE-EEeeecCCCCCCEEEEeeC------CCcEEEEeccCCCccccccceeeccC-------
Q 010784          195 KGSCQRCFKGHN----GPVST-LSDKLLGDGSGKILASGGE------DATVRLWSLSSSGKRGQQALKATLYG-------  256 (501)
Q Consensus       195 ~~~~~~~~~~h~----~~v~~-l~~s~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~-------  256 (501)
                      +|+.+-.+....    ..+.+ ...     .++ .++.+..      +|.|..+|..+++.      +-.+..       
T Consensus       136 tG~~~W~~~~~~~~~~~~~~~~P~v-----~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~------~W~~~~~~~~p~~  203 (668)
T 1kv9_A          136 TGKAIWSQQTTDPAKPYSITGAPRV-----VKG-KVIIGNGGAEYGVRGFVSAYDADTGKL------AWRFYTVPGDPAL  203 (668)
T ss_dssp             TCCEEEEEECSCTTSSCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTCCE------EEEEESSCCCTTS
T ss_pred             CCCEeeeeccCCCCCcceecCCCEE-----ECC-EEEEeCCCCCcCCCCEEEEEECCCCcE------EEEecccCCCCCc
Confidence            787775554321    11111 111     133 4555543      58999999998875      222210       


Q ss_pred             ------------------------CCCceeEEEEeecCCeEEEEEeCCC-------------------eEEEEECCCCcc
Q 010784          257 ------------------------HEKPIKLMSVAGHKSFLLVTISKDS-------------------KVRVWDTSTSSA  293 (501)
Q Consensus       257 ------------------------~~~~v~~l~~~~~~~~~l~s~s~dg-------------------~v~vwd~~~~~~  293 (501)
                                              +......+++.+ ...+++.++.++                   .|..+|.++++.
T Consensus       204 ~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~  282 (668)
T 1kv9_A          204 PYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL  282 (668)
T ss_dssp             CCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE
T ss_pred             cccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce
Confidence                                    011112356766 445777777666                   399999999987


Q ss_pred             ccceeccccee----cCCCce--eeecCCCe--EEEEe--CCcEEEEEcCCCceEeeeccCC------------CcE---
Q 010784          294 VRSSCCVGMTS----VPGVPV--DMKCHESM--LYIAS--GSSVVTIDLRTMQKVMTPAICK------------PIL---  348 (501)
Q Consensus       294 ~~~~~~~~~~~----~~~~~~--~~~~~~~~--~~~~~--~~~i~~~d~~~~~~~~~~~~~~------------~~v---  348 (501)
                      +-.........    ....+.  .+..+...  .++..  .+.++++|.++++.+.......            .++   
T Consensus       283 ~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~  362 (668)
T 1kv9_A          283 AWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAP  362 (668)
T ss_dssp             EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECT
T ss_pred             eeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccc
Confidence            65544321110    001111  11222221  12222  3489999999998874332111            000   


Q ss_pred             ---------------------EEEEEcCCCcEEEEE------------------------------------cCCc-EEE
Q 010784          349 ---------------------HSFSIMPSKSLICTG------------------------------------GIGK-AMT  370 (501)
Q Consensus       349 ---------------------~~v~~~~~~~~l~~~------------------------------------~~d~-i~i  370 (501)
                                           ..++++|+..+++..                                    ..++ |..
T Consensus       363 ~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A  442 (668)
T 1kv9_A          363 GVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLA  442 (668)
T ss_dssp             TTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEE
T ss_pred             cccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEE
Confidence                                 125677775555431                                    1225 899


Q ss_pred             EecCCCCCCCCCCCcccccCcccCeE--EEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784          371 WDIRRSQDAVKPQPMAELDGHVGSVT--QLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       371 wd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                      ||+.+++..      -....+ ....  .+... ..+++.++.||.++.||..+|+.+..+....    ...-.-+.+..
T Consensus       443 ~D~~tG~~~------W~~~~~-~~~~~~~~~t~-gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~----~~~~~p~~~~~  510 (668)
T 1kv9_A          443 WDPVKQKAA------WKVPYP-THWNGGTLSTA-GNLVFQGTAAGQMHAYSADKGEALWQFEAQS----GIVAAPMTFEL  510 (668)
T ss_dssp             EETTTTEEE------EEEEES-SSCCCCEEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSS----CCCSCCEEEEE
T ss_pred             EeCCCCcEE------EEccCC-CCCcCceeEeC-CCEEEEECCcccchhhhhhcChhheEecCCC----CcccCceEEEE
Confidence            999987654      232221 1222  22222 3455556799999999999999998885432    11112344566


Q ss_pred             ccc-EEEEee
Q 010784          449 SGC-RIVTAS  457 (501)
Q Consensus       449 ~g~-~l~s~~  457 (501)
                      +|+ +++.++
T Consensus       511 ~G~~yva~~~  520 (668)
T 1kv9_A          511 AGRQYVAIMA  520 (668)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            777 444443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.61  E-value=2e-05  Score=67.03  Aligned_cols=182  Identities=16%  Similarity=0.148  Sum_probs=120.6

Q ss_pred             CceEEEEeeecCCCCCCEEEEeeCC--CcEEEEeccCCCccccccceeeccCCCCc-eeEEEEeecCCeEEEEEeCCCeE
Q 010784          207 GPVSTLSDKLLGDGSGKILASGGED--ATVRLWSLSSSGKRGQQALKATLYGHEKP-IKLMSVAGHKSFLLVTISKDSKV  283 (501)
Q Consensus       207 ~~v~~l~~s~~~~~~~~~l~sg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~l~s~s~dg~v  283 (501)
                      .-...+.|+     ++.++.+.+.+  +.|+.+|+.+++.      +......... -..+.+.  ++.+.+..-.++.+
T Consensus        21 ~ftqGL~~~-----~~~LyestG~~g~S~v~~vD~~tgkv------~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           21 AFTEGLFYL-----RGHLYESTGETGRSSVRKVDLETGRI------LQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEG   87 (243)
T ss_dssp             CCEEEEEEE-----TTEEEEEECCTTSCEEEEEETTTCCE------EEEEECCTTCCEEEEEEE--TTEEEEEESSSSEE
T ss_pred             cccccEEEE-----CCEEEEECCCCCCceEEEEECCCCCE------EEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEE
Confidence            345688885     36666676665  4899999999874      4444322221 1234443  56666666778999


Q ss_pred             EEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeeccCC-----CcEEEEEEcCCC
Q 010784          284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAICK-----PILHSFSIMPSK  357 (501)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~-----~~v~~v~~~~~~  357 (501)
                      .+||..+.+.+..+.      ..+..+.+..+...++++.++ .+.++|..+.+.+.++....     ..++.+.+. +|
T Consensus        88 ~v~D~~tl~~~~ti~------~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G  160 (243)
T 3mbr_X           88 FVYDLATLTPRARFR------YPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG  160 (243)
T ss_dssp             EEEETTTTEEEEEEE------CSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             EEEECCcCcEEEEEe------CCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC
Confidence            999999987655443      344567777777778887764 89999999998887766422     345666665 67


Q ss_pred             cEEEEEcCCc-EEEEecCCCCCCCCCCCcccc--------cCcccCeEEEEecCC--eEEEEe
Q 010784          358 SLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL--------DGHVGSVTQLHMDPY--KIVTGG  409 (501)
Q Consensus       358 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~--~~l~~g  409 (501)
                      ++++...... |.+.|..+++...... +..+        .......+.|+++|+  +++++|
T Consensus       161 ~lyanvw~s~~I~vIDp~tG~V~~~id-l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          161 ELLANVWLTSRIARIDPASGKVVAWID-LQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEEETTTTEEEEECTTTCBEEEEEE-CGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCeEEEEECCCCCEEEEEE-CCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            7666665455 9999999987541100 0001        112246789999997  888887

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.59  E-value=3.4e-05  Score=75.93  Aligned_cols=256  Identities=8%  Similarity=-0.060  Sum_probs=139.4

Q ss_pred             cCcEEEEeeCCCceEEec--CCceeeeccCCC----CceEE-EEeeecCCCCCCEEEEeeC------CCcEEEEeccCCC
Q 010784          177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHN----GPVST-LSDKLLGDGSGKILASGGE------DATVRLWSLSSSG  243 (501)
Q Consensus       177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~----~~v~~-l~~s~~~~~~~~~l~sg~~------dg~i~iwd~~~~~  243 (501)
                      .+..++.++.|+.+..+|  +++.+-.+....    ..+.+ ...     .++ .++.++.      +|.|..+|..+++
T Consensus       114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~  187 (571)
T 2ad6_A          114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-----AKD-TVLMGCSGAELGVRGAVNAFDLKTGE  187 (571)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-----ETT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-----ECC-EEEEEecCCccCCCCEEEEEECCCCc
Confidence            356778888899999999  677665443211    01211 111     133 4555554      7899999999887


Q ss_pred             ccccccceeeccCCC-------------------------------------Cce-eEEEEeecCCeEEEEEeCC-----
Q 010784          244 KRGQQALKATLYGHE-------------------------------------KPI-KLMSVAGHKSFLLVTISKD-----  280 (501)
Q Consensus       244 ~~~~~~~~~~~~~~~-------------------------------------~~v-~~l~~~~~~~~~l~s~s~d-----  280 (501)
                      .      +-.+....                                     ..+ ..+++.+..+ .++.++.+     
T Consensus       188 ~------~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~  260 (571)
T 2ad6_A          188 L------KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWN  260 (571)
T ss_dssp             E------EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSC
T ss_pred             E------EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCcccc
Confidence            5      21111100                                     000 1245555333 45444432     


Q ss_pred             -----------CeEEEEECCCCccccceecccce----ecCCCceeeec--CCC--e-EEEEe-CCcEEEEEcCCCceEe
Q 010784          281 -----------SKVRVWDTSTSSAVRSSCCVGMT----SVPGVPVDMKC--HES--M-LYIAS-GSSVVTIDLRTMQKVM  339 (501)
Q Consensus       281 -----------g~v~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~--~-~~~~~-~~~i~~~d~~~~~~~~  339 (501)
                                 +.|..+|.++++.+-........    .....+.-...  +..  . ++... .+.+.++|..+++.+.
T Consensus       261 ~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w  340 (571)
T 2ad6_A          261 ETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             GGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence                       36999999999876554432211    01112222221  221  1 22233 3489999999998876


Q ss_pred             eeccCC-------------CcE--------------------------EEEEEcCCCcEEEEEc----------------
Q 010784          340 TPAICK-------------PIL--------------------------HSFSIMPSKSLICTGG----------------  364 (501)
Q Consensus       340 ~~~~~~-------------~~v--------------------------~~v~~~~~~~~l~~~~----------------  364 (501)
                      ......             .++                          ..++++|+..++++..                
T Consensus       341 ~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~  420 (571)
T 2ad6_A          341 AEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRA  420 (571)
T ss_dssp             EEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred             eecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccccc
Confidence            554221             111                          2356778766666543                


Q ss_pred             ---------------------CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEe-cCC-eEEEEecCCCcEEEEeC
Q 010784          365 ---------------------IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM-DPY-KIVTGGRDDLRINIWET  420 (501)
Q Consensus       365 ---------------------~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~-~~l~~gs~dg~i~iwd~  420 (501)
                                           .++ |..||..+++..      .++.. ...+....+ ..+ .+++ ++.||.|+.+|.
T Consensus       421 g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~------W~~~~-~~~~~~~~~~t~gg~v~~-g~~dg~l~a~D~  492 (571)
T 2ad6_A          421 GQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK------WTKWE-KFAAWGGTLYTKGGLVWY-ATLDGYLKALDN  492 (571)
T ss_dssp             TSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE------EEEEE-SSCCCSBCEEETTTEEEE-ECTTSEEEEEET
T ss_pred             CCccccccceeccCccccCCCCCCeEEEEECCCCCEE------EEecC-CCCccceeEEECCCEEEE-EcCCCeEEEEEC
Confidence                                 235 888998887654      33221 112222111 123 4444 679999999999


Q ss_pred             CCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          421 DTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      .+|+.+.++.....    ..-.-+.+..+|+.++...
T Consensus       493 ~tG~~lw~~~~~~~----~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          493 KDGKELWNFKMPSG----GIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             TTCCEEEEEECSSC----CCSCCEEEEETTEEEEEEE
T ss_pred             CCCCEEEEEeCCCC----cEeeeEEEEECCEEEEEEE
Confidence            99999988864321    1112244667887655543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.55  E-value=4.2e-05  Score=75.29  Aligned_cols=78  Identities=12%  Similarity=-0.059  Sum_probs=44.8

Q ss_pred             EEEEecCCCCCCCCCCCcccccCcccCeE-E-EEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeE
Q 010784          368 AMTWDIRRSQDAVKPQPMAELDGHVGSVT-Q-LHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSA  445 (501)
Q Consensus       368 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~-~-l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  445 (501)
                      |..||+.+++.+      -+... ..+.. . +......++ .++.||.++.||.++|+.+-++....    .....-+.
T Consensus       455 l~A~D~~tG~~~------W~~~~-~~~~~~g~~~tagg~vf-~gt~dg~l~A~D~~tG~~lW~~~l~~----g~~~~P~~  522 (599)
T 1w6s_A          455 IKAYNAITGDYK------WEKME-RFAVWGGTMATAGDLVF-YGTLDGYLKARDSDTGDLLWKFKIPS----GAIGYPMT  522 (599)
T ss_dssp             EEEECTTTCCEE------EEEEE-SSCCCSBCEEETTTEEE-EECTTSEEEEEETTTCCEEEEEECSS----CCCSCCEE
T ss_pred             EEEEECCCCCEE------eEecC-CCCccCcceEecCCEEE-EECCCCeEEEEECCCCCEEEEeeCCC----CcEeccEE
Confidence            888888877643      22211 11111 1 222223444 46799999999999999998885432    11223355


Q ss_pred             eeccccE-EEEee
Q 010784          446 MAVSGCR-IVTAS  457 (501)
Q Consensus       446 ~s~~g~~-l~s~~  457 (501)
                      +..+|+. +++.+
T Consensus       523 y~~~G~qyv~~~~  535 (599)
T 1w6s_A          523 YTHKGTQYVAIYY  535 (599)
T ss_dssp             EEETTEEEEEEEE
T ss_pred             EEeCCEEEEEEEc
Confidence            6778874 44433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.51  E-value=3e-05  Score=70.57  Aligned_cols=120  Identities=7%  Similarity=0.002  Sum_probs=67.8

Q ss_pred             EEEEEEcCCCcEEEEE-cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC----------CCc
Q 010784          348 LHSFSIMPSKSLICTG-GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD----------DLR  414 (501)
Q Consensus       348 v~~v~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~----------dg~  414 (501)
                      ...++++|+++.|+.+ +..+ |..|++.....-    ....+....+ ...++++++ .++++...          .+.
T Consensus       187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~----~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~  261 (322)
T 2fp8_A          187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG----TAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPK  261 (322)
T ss_dssp             CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT----CEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEE
T ss_pred             CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC----ccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccE
Confidence            4578999999865555 4444 999998753210    0111111122 678899998 77666533          467


Q ss_pred             EEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcccee
Q 010784          415 INIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL  477 (501)
Q Consensus       415 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~  477 (501)
                      |..+|. .++.+..+..... .....++.+++ .++++.++..  ..+.|..+++....+..+
T Consensus       262 v~~~d~-~G~~~~~~~~~~g-~~~~~~~~~~~-~~g~L~v~~~--~~~~i~~~~~~~~~~~~~  319 (322)
T 2fp8_A          262 GIKFDE-FGNILEVIPLPPP-FAGEHFEQIQE-HDGLLYIGTL--FHGSVGILVYDKKGNSFV  319 (322)
T ss_dssp             EEEECT-TSCEEEEEECCTT-TTTSCCCEEEE-ETTEEEEECS--SCSEEEEEEC--------
T ss_pred             EEEECC-CCCEEEEEECCCC-CccccceEEEE-eCCEEEEeec--CCCceEEEecccccCccc
Confidence            888886 4777766642211 01234566666 4666555554  568899999876665544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.50  E-value=0.00016  Score=65.24  Aligned_cols=234  Identities=12%  Similarity=0.025  Sum_probs=130.1

Q ss_pred             cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784          154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA  232 (501)
Q Consensus       154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg  232 (501)
                      .....++|.+             +++++++...++.|..|| .+.....+. .......+++.    ++++++++.....
T Consensus        32 ~~pegia~~~-------------~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~----~dG~l~vad~~~~   93 (306)
T 2p4o_A           32 TFLENLASAP-------------DGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFT----SNGDLVATGWNAD   93 (306)
T ss_dssp             CCEEEEEECT-------------TSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEEC----TTSCEEEEEECTT
T ss_pred             CCcceEEECC-------------CCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEc----CCCcEEEEeccCC
Confidence            4567888988             788888777889999999 554433332 23567888885    7888666554332


Q ss_pred             --cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784          233 --TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV  310 (501)
Q Consensus       233 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  310 (501)
                        .|..+|..++..    ..+.... .......++..+ ++..+++-..++.|.++|..+++....... ..        
T Consensus        94 ~~~v~~~d~~~g~~----~~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~-~~--------  158 (306)
T 2p4o_A           94 SIPVVSLVKSDGTV----ETLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEH-PM--------  158 (306)
T ss_dssp             SCEEEEEECTTSCE----EEEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEEC-GG--------
T ss_pred             cceEEEEcCCCCeE----EEEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEEC-Cc--------
Confidence              366666665542    1111111 122234444443 444555555678888888765321000000 00        


Q ss_pred             eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCC-CCCCCCCCCccc
Q 010784          311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRR-SQDAVKPQPMAE  387 (501)
Q Consensus       311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~-~~~~~~~~~~~~  387 (501)
                                              ... ......-...+.+  ++++..|+.+. ..+ |..+++.. ++..    ....
T Consensus       159 ------------------------~~~-~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~----~~~~  207 (306)
T 2p4o_A          159 ------------------------LAR-SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG----EPEI  207 (306)
T ss_dssp             ------------------------GSC-SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC----CCEE
T ss_pred             ------------------------ccc-ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC----ccEE
Confidence                                    000 0000011223445  67776555544 445 99999875 2210    0111


Q ss_pred             ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccccc--ccccCCCCCCCcceeeeEee---ccccEEEEeec
Q 010784          388 LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLAN--SLLCNYPEEADISTGCSAMA---VSGCRIVTASY  458 (501)
Q Consensus       388 ~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~s---~~g~~l~s~~~  458 (501)
                      +.. ......++++++ +++++....+.|.+++.. ++...  .+.     ......++++|.   |+++.|+.++.
T Consensus       208 ~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-----~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          208 FVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-----QGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-----GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             Eec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-----cccCCceEEEEecccCCCCEEEEECC
Confidence            111 134567889998 888877678899999975 65422  332     113457889998   89877776653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.49  E-value=4.9e-05  Score=69.20  Aligned_cols=235  Identities=7%  Similarity=-0.041  Sum_probs=133.0

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc--------------------CCcceeEEEeeccCcCccc
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD--------------------HKARITCMRLFPLHETSLF  170 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~--------------------h~~~V~~~~~~~~~~~~~~  170 (501)
                      .....+++++++.++.++..++.|..|+..++ .. ..+..                    ....+..+++.+.      
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~------   90 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS-GF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ------   90 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTT-CE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT------
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCC-ce-EEEecccccccccccccccchhccccCCCCceEEEcCC------
Confidence            34788999999986667777888888887653 22 11110                    1134778888851      


Q ss_pred             ccCCCCcCcEEEEeeCCCceEEec-CCceeeeccC-----CCCceEEEEeeecCCC-CCCEEEEeeC-------------
Q 010784          171 RSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKG-----HNGPVSTLSDKLLGDG-SGKILASGGE-------------  230 (501)
Q Consensus       171 ~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~-----h~~~v~~l~~s~~~~~-~~~~l~sg~~-------------  230 (501)
                            +++ |+.+...+.|..+| .+..+..+..     .......+++.    + +|++.++-..             
T Consensus        91 ------~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d----~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           91 ------NNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD----QRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             ------TTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEEC----TTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             ------CCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEe----cCCCEEEEECCcccccccccceehc
Confidence                  344 44444445588888 3333333321     11245677774    7 7776665432             


Q ss_pred             ----CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCe-EEEEEeCCCeEEEEECCCCccccceecccceec
Q 010784          231 ----DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV  305 (501)
Q Consensus       231 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~  305 (501)
                          ++.|..+|..++..       ..+...-.....|++++ +++ ++++-+..+.|.++++..... ...        
T Consensus       160 ~~~~~g~v~~~d~~~~~~-------~~~~~~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~-~~~--------  222 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKET-------TLLLKELHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKK-GTA--------  222 (322)
T ss_dssp             HTCCCEEEEEEETTTTEE-------EEEEEEESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTT-TCE--------
T ss_pred             ccCCCceEEEEeCCCCEE-------EEeccCCccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcC-Ccc--------
Confidence                36677787765431       11111112345688887 555 445556678899998875321 000        


Q ss_pred             CCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC----------Cc-EEEEecC
Q 010784          306 PGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI----------GK-AMTWDIR  374 (501)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~----------d~-i~iwd~~  374 (501)
                                                    +....   ..+ ...+++.++|+++++...          .+ |..+|..
T Consensus       223 ------------------------------~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          223 ------------------------------EVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             ------------------------------EEEEE---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             ------------------------------ceEEe---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence                                          00001   112 567888888887766544          34 7777754


Q ss_pred             CCCCCCCCCCcccccCc----ccCeEEEEecCCeEEEEecCCCcEEEEeCCC
Q 010784          375 RSQDAVKPQPMAELDGH----VGSVTQLHMDPYKIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       375 ~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~  422 (501)
                       ++..      ..+...    ...++.+++...+++++....+.|.++++..
T Consensus       269 -G~~~------~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          269 -GNIL------EVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             -SCEE------EEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred             -CCEE------EEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence             3321      333221    2346666665447777776788899998753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.47  E-value=7.7e-05  Score=73.52  Aligned_cols=80  Identities=13%  Similarity=-0.001  Sum_probs=47.4

Q ss_pred             Cc-EEEEecCCCCCCCCCCCcccccCcccCeE--EEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784          366 GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVT--QLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG  442 (501)
Q Consensus       366 d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  442 (501)
                      .+ |..||+.+++.+      -+.... .++.  .+.. ...++..|+.||.++.||.++|+.+-++....    .....
T Consensus       465 ~G~l~A~D~~tG~~~------W~~~~~-~~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~----g~~a~  532 (582)
T 1flg_A          465 VGSLRAMDPVSGKVV------WEHKEH-LPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS----GIVSP  532 (582)
T ss_dssp             SEEEEEECTTTCCEE------EEEEES-SCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSS----CCCSC
T ss_pred             cceEEEEECCCCCEE------EEecCC-CCCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCC----CcccC
Confidence            35 888999887654      222211 1111  1222 23344457799999999999999998885422    11122


Q ss_pred             eeEeecccc-EEEEee
Q 010784          443 CSAMAVSGC-RIVTAS  457 (501)
Q Consensus       443 ~~~~s~~g~-~l~s~~  457 (501)
                      -+.+..+|+ |+++.+
T Consensus       533 P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          533 PITWEQDGEQYLGVTV  548 (582)
T ss_dssp             CEEEEETTEEEEEEEE
T ss_pred             ceEEEECCEEEEEEEc
Confidence            356778887 444443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.44  E-value=0.0001  Score=72.58  Aligned_cols=235  Identities=13%  Similarity=0.069  Sum_probs=133.2

Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeecc--CCC--CceeE-EEEeecCCeEEEEEeC------CCeEEEEECCC
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLY--GHE--KPIKL-MSVAGHKSFLLVTISK------DSKVRVWDTST  290 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~--~~v~~-l~~~~~~~~~l~s~s~------dg~v~vwd~~~  290 (501)
                      +..++.++.|+.|..+|..+++.      +-...  .+.  ..+.+ ..+.  ++ .++.++.      ++.|..+|.++
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~------~W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~t  185 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKI------NWEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKT  185 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCE------EEEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTT
T ss_pred             CCEEEEEeCCCEEEEEECCCCCE------EEEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCC
Confidence            45778888899999999999874      22221  110  01111 1122  44 4445544      78999999999


Q ss_pred             Cccccceecccce-e------------------------------c-CC---CceeeecCCCeEEEEeCC----------
Q 010784          291 SSAVRSSCCVGMT-S------------------------------V-PG---VPVDMKCHESMLYIASGS----------  325 (501)
Q Consensus       291 ~~~~~~~~~~~~~-~------------------------------~-~~---~~~~~~~~~~~~~~~~~~----------  325 (501)
                      ++.+-........ .                              . .+   ....+......+++.++.          
T Consensus       186 G~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~  265 (571)
T 2ad6_A          186 GELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRP  265 (571)
T ss_dssp             CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSC
T ss_pred             CcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccC
Confidence            9876543322110 0                              0 00   011222334566666642          


Q ss_pred             -------cEEEEEcCCCceEeeeccC--C--------CcEEEEEEcCCCc---EEEEEcCCc-EEEEecCCCCCCCCCCC
Q 010784          326 -------SVVTIDLRTMQKVMTPAIC--K--------PILHSFSIMPSKS---LICTGGIGK-AMTWDIRRSQDAVKPQP  384 (501)
Q Consensus       326 -------~i~~~d~~~~~~~~~~~~~--~--------~~v~~v~~~~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~  384 (501)
                             .+..+|.++++.+..++..  .        .++. +....+|+   .++.++.++ ++++|..+++.+-....
T Consensus       266 gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          266 GDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             SCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             CCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence                   4899999999998776532  1        2221 22224674   577788777 99999998875411000


Q ss_pred             cccc------c-CcccCe--------------------------EEEEecCC-eEEEEe---------------------
Q 010784          385 MAEL------D-GHVGSV--------------------------TQLHMDPY-KIVTGG---------------------  409 (501)
Q Consensus       385 ~~~~------~-~h~~~v--------------------------~~l~~~~~-~~l~~g---------------------  409 (501)
                      ....      . ....++                          ..++++|+ .++...                     
T Consensus       345 ~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  424 (571)
T 2ad6_A          345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF  424 (571)
T ss_dssp             STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc
Confidence            0000      0 000000                          23567776 333322                     


Q ss_pred             ----------------cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          410 ----------------RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       410 ----------------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                                      ..+|.|..||..+++.+-++...      ..+....+...+..++.++  .+|.|+.+|..+++
T Consensus       425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~------~~~~~~~~~t~gg~v~~g~--~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK------FAAWGGTLYTKGGLVWYAT--LDGYLKALDNKDGK  496 (571)
T ss_dssp             CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES------SCCCSBCEEETTTEEEEEC--TTSEEEEEETTTCC
T ss_pred             ccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC------CCccceeEEECCCEEEEEc--CCCeEEEEECCCCC
Confidence                            13588999999999988777422      1223333444566777777  66999999987766


Q ss_pred             c
Q 010784          474 C  474 (501)
Q Consensus       474 ~  474 (501)
                      .
T Consensus       497 ~  497 (571)
T 2ad6_A          497 E  497 (571)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.38  E-value=0.00017  Score=70.99  Aligned_cols=145  Identities=12%  Similarity=0.090  Sum_probs=86.6

Q ss_pred             EEEeeCCCcEEEEeccCCCccccccceeeccCCC----CceeE-EEEeecCCeEEEEEe------CCCeEEEEECCCCcc
Q 010784          225 LASGGEDATVRLWSLSSSGKRGQQALKATLYGHE----KPIKL-MSVAGHKSFLLVTIS------KDSKVRVWDTSTSSA  293 (501)
Q Consensus       225 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~v~~-l~~~~~~~~~l~s~s------~dg~v~vwd~~~~~~  293 (501)
                      |+.++.|+.|..+|..+++.      +-......    ..+.+ -.+.  ++. ++.++      .+|.|+.+|.++++.
T Consensus       124 V~v~t~dg~l~AlDa~TG~~------~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~  194 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGET------VWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAYDVKTGEQ  194 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCE------EEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred             EEEEcCCCEEEEEECCCCCE------EEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEEECCCCcE
Confidence            78888899999999999875      22221111    01111 1122  444 44444      379999999999987


Q ss_pred             ccceeccccee-------------------------------c-CC---CceeeecCCCeEEEEeCC-------------
Q 010784          294 VRSSCCVGMTS-------------------------------V-PG---VPVDMKCHESMLYIASGS-------------  325 (501)
Q Consensus       294 ~~~~~~~~~~~-------------------------------~-~~---~~~~~~~~~~~~~~~~~~-------------  325 (501)
                      +-.........                               . .+   ....+....+.+++.+++             
T Consensus       195 ~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~  274 (599)
T 1w6s_A          195 VWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDN  274 (599)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCc
Confidence            65433221110                               0 00   011233345566776653             


Q ss_pred             ----cEEEEEcCCCceEeeeccCCC----------cEEEEEEc-CCC---cEEEEEcCCc-EEEEecCCCCCC
Q 010784          326 ----SVVTIDLRTMQKVMTPAICKP----------ILHSFSIM-PSK---SLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       326 ----~i~~~d~~~~~~~~~~~~~~~----------~v~~v~~~-~~~---~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                          .+..+|.++++.+..++....          ++. +... .+|   ..++.++.++ ++++|..+++.+
T Consensus       275 ~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          275 KWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             TTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence                689999999999877764321          122 2222 467   5677788778 999999988754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.38  E-value=0.0014  Score=60.08  Aligned_cols=219  Identities=11%  Similarity=-0.068  Sum_probs=127.0

Q ss_pred             CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784          188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                      ..|+..+ .+.....+.........++|.   ..++.++++-...+.|..++++....      .............+++
T Consensus        53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d---~~~~~ly~~D~~~~~I~r~~~~g~~~------~~~~~~~~~~p~glav  123 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNNLENAIALDFH---HRRELVFWSDVTLDRILRANLNGSNV------EEVVSTGLESPGGLAV  123 (349)
T ss_dssp             SCEEEECTTSCCEEEEECSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSCSCCCEEEE
T ss_pred             cceEEEeCCCCeeEEeecCCCceEEEEEe---ccccEEEEEeccCCceEEEecCCCCc------eEEEeCCCCCccEEEE
Confidence            4577777 443333333334457889986   13444555555678899999886542      2222222234567888


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP  346 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  346 (501)
                      .+.++.++++-...+.|.+.++......                                            ......-.
T Consensus       124 d~~~g~ly~~d~~~~~I~~~~~dG~~~~--------------------------------------------~l~~~~l~  159 (349)
T 3v64_C          124 DWVHDKLYWTDSGTSRIEVANLDGAHRK--------------------------------------------VLLWQSLE  159 (349)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCE--------------------------------------------EEECTTCS
T ss_pred             ecCCCeEEEEcCCCCeEEEEcCCCCceE--------------------------------------------EEEeCCCC
Confidence            8656777777777788888887653210                                            00111224


Q ss_pred             cEEEEEEcCC-CcEEEEEcCC-c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCC
Q 010784          347 ILHSFSIMPS-KSLICTGGIG-K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       347 ~v~~v~~~~~-~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~  421 (501)
                      ....++++|. +.++++-... . |..+++......      ......-...+.|+++|+  +++.+-+..+.|..+++.
T Consensus       160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~------~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR------IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE------ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE------EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            4678999985 4455554444 4 888887643221      111222345789999975  777777778899999986


Q ss_pred             CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      . .....+..    .......++++ ..+...++-.  ..+.|...+-.++.
T Consensus       234 G-~~~~~~~~----~~~~~P~giav-~~~~ly~td~--~~~~V~~~~~~~G~  277 (349)
T 3v64_C          234 G-SHRKAVIS----QGLPHPFAITV-FEDSLYWTDW--HTKSINSANKFTGK  277 (349)
T ss_dssp             S-CSCEEEEC----SSCSSEEEEEE-ETTEEEEEET--TTTEEEEEETTTCC
T ss_pred             C-CceEEEEe----CCCCCceEEEE-ECCEEEEecC--CCCeEEEEEccCCC
Confidence            4 33333311    11234566777 3444444443  56788888744443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.33  E-value=0.0033  Score=62.38  Aligned_cols=323  Identities=9%  Similarity=-0.020  Sum_probs=175.7

Q ss_pred             CCceEEeeC-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          112 PHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       112 ~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      .+..|++++ ++.++.+-...+.|..+++.........+..--.....+++.+.            .++++++-...+.|
T Consensus        41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~------------~~~ly~~d~~~~~I  108 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL------------GEKLYWTDSETNRI  108 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT------------TTEEEEEETTTTEE
T ss_pred             ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec------------CCEEEEEeCCCCEE
Confidence            366788886 45555555556778888876431122233333356788888873            35566666677899


Q ss_pred             EEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784          191 RLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       191 ~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                      .+.+ .+.....+. ..-.....|++.    +.+..|+....  .+.|...+++....      .......-.....|++
T Consensus       109 ~v~~~dG~~~~~l~~~~l~~P~~Iavd----p~~g~ly~tD~g~~~~I~r~~~dG~~~------~~l~~~~~~~P~Glal  178 (619)
T 3s94_A          109 EVSNLDGSLRKVLFWQELDQPRAIALD----PSSGFMYWTDWGEVPKIERAGMDGSSR------FIIINSEIYWPNGLTL  178 (619)
T ss_dssp             EEEETTSCSCEEEECSSCSCCCCEEEE----TTTTEEEEEECSSSCEEEEEETTSCSC------EEEECSSCSSEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCCCCceEEEe----cCCCeEEEeccCCCCEEEEEECCCCce------EEEEeCCCCCCcEEEE
Confidence            9998 555444433 333445678875    55445544443  45676667665432      1222223345678999


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEeeeccC
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMTPAIC  344 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~  344 (501)
                      .+.++.++++-+..+.|...|+.........     ......+..+...++.++.+.-  +.|...|..+++....+...
T Consensus       179 d~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~-----~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~  253 (619)
T 3s94_A          179 DYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-----KGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSD  253 (619)
T ss_dssp             ETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSC
T ss_pred             EccCCEEEEEeCCCCeEEEecCCCCccEEEE-----eCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecC
Confidence            9866777777677788999998754321110     0123345677777777777653  37888887665432222110


Q ss_pred             CCc-------------------------EEEEEE-----------cC-------C--------CcEEEEEcCCcEEEEec
Q 010784          345 KPI-------------------------LHSFSI-----------MP-------S--------KSLICTGGIGKAMTWDI  373 (501)
Q Consensus       345 ~~~-------------------------v~~v~~-----------~~-------~--------~~~l~~~~~d~i~iwd~  373 (501)
                      ...                         ...+++           .|       |        ..+|+.+....|+..++
T Consensus       254 ~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l  333 (619)
T 3s94_A          254 IFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISL  333 (619)
T ss_dssp             CCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEES
T ss_pred             CCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEec
Confidence            000                         000111           11       1        11333333333666666


Q ss_pred             CCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc
Q 010784          374 RRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC  451 (501)
Q Consensus       374 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  451 (501)
                      ......   .....+.+ -..+.++++++.  .++.+-...+.|+.++.........+.     .......++++...++
T Consensus       334 ~~~~~~---~~~~~~~~-l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~-----~~~~~p~GlAvD~~~~  404 (619)
T 3s94_A          334 DTPDFT---DIVLQLED-IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT-----AQIAHPDGIAVDWVAR  404 (619)
T ss_dssp             SSTTCC---CEECCCSC-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----SSCSCCCEEEEETTTT
T ss_pred             CCCccc---eeEEeccc-cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE-----CCCCCcCceEEecccC
Confidence            554321   00011111 234678999984  777776678899999986533322221     1124566889987655


Q ss_pred             EEEEeecCCCceEEEeeccC
Q 010784          452 RIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       452 ~l~s~~~d~~g~i~~w~~~~  471 (501)
                      .|+.+.. ..+.|.+.++..
T Consensus       405 ~lY~tD~-~~~~I~v~~~~G  423 (619)
T 3s94_A          405 NLYWTDT-GTDRIEVTRLNG  423 (619)
T ss_dssp             EEEEEET-TTTEEEEEETTS
T ss_pred             cEEEEeC-CCCcEEEEeCCC
Confidence            5555443 567787777553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.31  E-value=0.0013  Score=61.31  Aligned_cols=220  Identities=10%  Similarity=-0.064  Sum_probs=126.7

Q ss_pred             CCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784          187 DHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS  265 (501)
Q Consensus       187 dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  265 (501)
                      ...|+..+ .+.....+.........++|.   ..++.++++-...+.|..++++....      ...+.........++
T Consensus        95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d---~~~~~ly~~D~~~~~I~r~~~~g~~~------~~~~~~~~~~p~gla  165 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLNNLENAIALDFH---HRRELVFWSDVTLDRILRANLNGSNV------EEVVSTGLESPGGLA  165 (386)
T ss_dssp             BSCEEEECTTSCCCEEEECSCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTSCCE------EEEECSSCSCCCCEE
T ss_pred             CccceeeccCCCcEEEEecCCCccEEEEEe---cCCCeEEEEeCCCCcEEEEecCCCCc------EEEEeCCCCCccEEE
Confidence            35677777 443333333334557889986   13444555555678899999886542      222222223345678


Q ss_pred             EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC
Q 010784          266 VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK  345 (501)
Q Consensus       266 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  345 (501)
                      +.+..+.++++-...+.|.+.++......                                            ..+...-
T Consensus       166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~--------------------------------------------~l~~~~l  201 (386)
T 3v65_B          166 VDWVHDKLYWTDSGTSRIEVANLDGAHRK--------------------------------------------VLLWQSL  201 (386)
T ss_dssp             EETTTTEEEEEETTTTEEEECBTTSCSCE--------------------------------------------EEECSSC
T ss_pred             EEeCCCeEEEEcCCCCeEEEEeCCCCceE--------------------------------------------EeecCCC
Confidence            87656777777777778888777543210                                            0011122


Q ss_pred             CcEEEEEEcCCCc-EEEEEcCC-c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeC
Q 010784          346 PILHSFSIMPSKS-LICTGGIG-K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWET  420 (501)
Q Consensus       346 ~~v~~v~~~~~~~-~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~  420 (501)
                      .....++++|.+. ++++-... . |..+++......      ......-...+.|+++|+  +++++-+..+.|..+++
T Consensus       202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~------~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR------IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE------EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred             CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE------EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            4567899998654 44444444 4 888887643221      111222345789999976  77777778889999998


Q ss_pred             CCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          421 DTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      ... ....+..    .......++++ ..+..+++-.  ..+.|..++...+.
T Consensus       276 dG~-~~~~~~~----~~~~~P~giav-~~~~ly~td~--~~~~V~~~~~~~G~  320 (386)
T 3v65_B          276 DGS-HRKAVIS----QGLPHPFAITV-FEDSLYWTDW--HTKSINSANKFTGK  320 (386)
T ss_dssp             TSC-SCEEEEC----SSCSSEEEEEE-ETTEEEEEET--TTTEEEEEETTTCC
T ss_pred             CCC-eeEEEEE----CCCCCceEEEE-ECCEEEEeeC--CCCeEEEEECCCCc
Confidence            643 3333311    11234566777 3444444444  56888888844443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.30  E-value=0.0024  Score=59.71  Aligned_cols=227  Identities=10%  Similarity=-0.034  Sum_probs=134.0

Q ss_pred             eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC-----ceeeeccCC
Q 010784          132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG-----SCQRCFKGH  205 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~-----~~~~~~~~h  205 (501)
                      ..|+..++... .... +......+..|+|.+.            ++.++++-...+.|+.++ .+     .....+...
T Consensus        92 ~~I~~i~l~~~-~~~~-~~~~~~~~~~l~~d~~------------~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~  157 (400)
T 3p5b_L           92 HEVRKMTLDRS-EYTS-LIPNLRNVVALDTEVA------------SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD  157 (400)
T ss_dssp             TEEEEECTTSC-SCEE-EECSCSCEEEEEEETT------------TTEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred             ceeEEEccCCc-ceeE-eccccCcceEEeeeec------------cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence            56666677642 2222 2334456889999873            455666656678888887 33     122222323


Q ss_pred             CCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-CCeE
Q 010784          206 NGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-DSKV  283 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-dg~v  283 (501)
                      ......+++.    . .+++.++-...+.|.+.+++....      ...+...-.....|++.|..+.++++-.. .+.|
T Consensus       158 ~~~p~glavD----~~~~~lY~~d~~~~~I~~~~~~g~~~------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I  227 (400)
T 3p5b_L          158 IQAPDGLAVD----WIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  227 (400)
T ss_dssp             CSCEEEEEEE----TTTTEEEEEETTTTEEEEECTTTCSE------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCE
T ss_pred             CCCcccEEEE----ecCCceEEEECCCCeEEEEeCCCCce------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEE
Confidence            4456677774    4 455666666678899998876542      22222233446789998856655555433 3667


Q ss_pred             EEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784          284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG  363 (501)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  363 (501)
                      ...++......                                            ......-.....|++++++..|+.+
T Consensus       228 ~~~~~dG~~~~--------------------------------------------~~~~~~l~~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          228 KKGGLNGVDIY--------------------------------------------SLVTENIQWPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             EEEETTSCSCE--------------------------------------------EEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCccE--------------------------------------------EEEECCCCceEEEEEEeCCCEEEEE
Confidence            77776543210                                            0011122456889999876655555


Q ss_pred             c-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784          364 G-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       364 ~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                      . ... |..+|+......    .+......-.....|++..+.++.+-...+.|..+|..+|+.+..+.
T Consensus       264 D~~~~~I~~~d~dG~~~~----~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          264 DSKLHSISSIDVNGGNRK----TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             ETTTTEEEEEETTSCCCE----EEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             ECCCCEEEEEeCCCCccE----EEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            4 444 999998653321    11111112334567888666777776788899999988888777763

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.24  E-value=0.00011  Score=73.87  Aligned_cols=268  Identities=13%  Similarity=0.047  Sum_probs=134.5

Q ss_pred             CceEEeeC-CcEEEeecCCe-----------eeEEEEecccccc-cceecc-cCCcceeEEEeeccCcCcccccCCCCcC
Q 010784          113 HDHILLDN-NDIFSTQGSSI-----------QNIKIDNFLSESY-YRATLS-DHKARITCMRLFPLHETSLFRSEPQRTE  178 (501)
Q Consensus       113 i~~~~~~~-~~~~~~~g~~d-----------~~i~vw~~~~~~~-~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~  178 (501)
                      ..+.++.+ ++++++.|+.+           ..+.+||..++.- .+..+. .+.....++++..             ++
T Consensus       188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-------------~g  254 (656)
T 1k3i_A          188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-------------NG  254 (656)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-------------TS
T ss_pred             ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-------------CC
Confidence            34666676 88888887543           2688899887421 111121 1222333456666             78


Q ss_pred             cEEEEeeC-CCceEEec--CCceee--eccCCCCceEEEEeeecCCCCCCEEEEee-CC-----CcEEEEeccCCCcccc
Q 010784          179 NVLVTSSC-DHSIRLWW--KGSCQR--CFKGHNGPVSTLSDKLLGDGSGKILASGG-ED-----ATVRLWSLSSSGKRGQ  247 (501)
Q Consensus       179 ~~l~s~~~-dg~i~vwd--~~~~~~--~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~d-----g~i~iwd~~~~~~~~~  247 (501)
                      .+++.|+. ++.+.+||  +.+-..  .+...... .+++..    +++++++.|+ .+     ..+.+||..++.-   
T Consensus       255 ~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~-~s~~~~----~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W---  326 (656)
T 1k3i_A          255 QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY-QSSATM----SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW---  326 (656)
T ss_dssp             CEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS-CEEEEC----TTSCEEEECCCCCSSSCCCCEEEEETTTTEE---
T ss_pred             CEEEeCCCCCCceEEecCcCCceeECCCCCccccc-cceEEe----cCCeEEEEeCcccCCcccccceEeCCCCCcc---
Confidence            99999984 45799998  332221  12211112 223332    5888999988 34     4689999987542   


Q ss_pred             ccce-----eecc-CCCCceeEEEEeecCCeEEEEEeCC---------CeEEEEECCCCccccceecccc------eecC
Q 010784          248 QALK-----ATLY-GHEKPIKLMSVAGHKSFLLVTISKD---------SKVRVWDTSTSSAVRSSCCVGM------TSVP  306 (501)
Q Consensus       248 ~~~~-----~~~~-~~~~~v~~l~~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~~~~------~~~~  306 (501)
                       ..+     ..+. .....    .+. .++..++.|+.+         ..+..||..+............      ....
T Consensus       327 -~~~~~~~~~p~~~~~~~~----~~~-~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~  400 (656)
T 1k3i_A          327 -TSLPNAKVNPMLTADKQG----LYR-SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC  400 (656)
T ss_dssp             -EEETTSCSGGGCCCCTTG----GGT-TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred             -eeCCCccccccccccccc----eee-cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC
Confidence             111     0010 00000    011 133344444433         4567888877653221110000      0001


Q ss_pred             CCceeeecCCCeEEEEeCC-------------cEEEEEcCCCceEeee--ccCCCc-EEEEEEcCCCcEEEEEcCC----
Q 010784          307 GVPVDMKCHESMLYIASGS-------------SVVTIDLRTMQKVMTP--AICKPI-LHSFSIMPSKSLICTGGIG----  366 (501)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~-------------~i~~~d~~~~~~~~~~--~~~~~~-v~~v~~~~~~~~l~~~~~d----  366 (501)
                      +....+......+++..|.             .+.+||..+.+-....  ..+... -.++...|++++++.|+.+    
T Consensus       401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~  480 (656)
T 1k3i_A          401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP  480 (656)
T ss_dssp             CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred             CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence            1111111234445554431             4667777766544332  222222 2345667899999999843    


Q ss_pred             -------c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC
Q 010784          367 -------K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD  411 (501)
Q Consensus       367 -------~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~  411 (501)
                             . +.+||..+.+-.    .+..+........+..+.|+ ++++.|+.
T Consensus       481 ~~~~~~~~~v~~ydp~t~~W~----~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          481 FEDSTPVFTPEIYVPEQDTFY----KQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TCCCSBCCCCEEEEGGGTEEE----ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCCCCcccceEEEcCCCCcee----ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                   3 899998765411    11212111122233445677 88888764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.24  E-value=0.0025  Score=57.42  Aligned_cols=229  Identities=8%  Similarity=-0.026  Sum_probs=133.1

Q ss_pred             eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCce--eeeccCCCC
Q 010784          131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSC--QRCFKGHNG  207 (501)
Q Consensus       131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~--~~~~~~h~~  207 (501)
                      ...|+..++.........+........+++|.+.            ++.++++-...+.|..++ .+..  ...+...-.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~------------~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~   79 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS------------HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL   79 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGG------------GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeC------------CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC
Confidence            4667777777532112222222245678899873            456666766778888887 3321  112222223


Q ss_pred             ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCCeEEEE
Q 010784          208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSKVRVW  286 (501)
Q Consensus       208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~vw  286 (501)
                      ....+++.   ...+.++++-...+.|.+++++....      .............+++.|..+.++++-. ..+.|...
T Consensus        80 ~p~glavd---~~~g~ly~~d~~~~~I~~~~~dG~~~------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~  150 (318)
T 3sov_A           80 SPDGLACD---WLGEKLYWTDSETNRIEVSNLDGSLR------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERA  150 (318)
T ss_dssp             CCCEEEEE---TTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEE
T ss_pred             CccEEEEE---cCCCeEEEEECCCCEEEEEECCCCcE------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEE
Confidence            44566763   12455666656678899999876432      1222233345678999885565555542 25677777


Q ss_pred             ECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-C
Q 010784          287 DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-I  365 (501)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~  365 (501)
                      ++......                                            ......-...+.+++++++..|+.+. .
T Consensus       151 ~~dG~~~~--------------------------------------------~~~~~~l~~Pnglavd~~~~~lY~aD~~  186 (318)
T 3sov_A          151 GMDGSSRF--------------------------------------------IIINSEIYWPNGLTLDYEEQKLYWADAK  186 (318)
T ss_dssp             ETTSCSCE--------------------------------------------EEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             EcCCCCeE--------------------------------------------EEEECCCCCccEEEEeccCCEEEEEECC
Confidence            76532110                                            00011123457899998655555444 4


Q ss_pred             Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784          366 GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       366 d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                      .. |..+|+......      ....+.......+++..+.++.+-...+.|..++..+|+....+.
T Consensus       187 ~~~I~~~d~dG~~~~------~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          187 LNFIHKSNLDGTNRQ------AVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TTEEEEEETTSCSCE------EEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEcCCCCceE------EEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            45 999998643211      111223445678888777777776788999999998888776663

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.24  E-value=0.0026  Score=57.43  Aligned_cols=228  Identities=9%  Similarity=-0.043  Sum_probs=131.5

Q ss_pred             eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC----ceeee-ccCC
Q 010784          132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG----SCQRC-FKGH  205 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~----~~~~~-~~~h  205 (501)
                      ..|+..++.+. .....+. .......++|.+.            ++.++++-...+.|..++ .+    ..... +...
T Consensus        10 ~~I~~i~~~~~-~~~~~~~-~~~~p~g~~~d~~------------~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~   75 (316)
T 1ijq_A           10 HEVRKMTLDRS-EYTSLIP-NLRNVVALDTEVA------------SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD   75 (316)
T ss_dssp             SSEEEEETTSC-CCEEEEC-SCSSEEEEEEETT------------TTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred             CeEEEEECCCc-ceEehhc-CCCceEEEEEEeC------------CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC
Confidence            34666677653 3333333 3345788999873            345666666678899888 33    22222 2222


Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-CeEE
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-SKVR  284 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-g~v~  284 (501)
                      -.....+++.   ...+++.++-..++.|.+.+++....      .......-.....+++.|.++.++++.... +.|.
T Consensus        76 ~~~p~glavd---~~~~~ly~~d~~~~~I~~~~~~g~~~------~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~  146 (316)
T 1ijq_A           76 IQAPDGLAVD---WIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK  146 (316)
T ss_dssp             CSCCCEEEEE---TTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             CCCcCEEEEe---ecCCeEEEEECCCCEEEEEeCCCCce------EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEE
Confidence            2345677774   12445555556678999999875431      122222334567889987566666655443 6777


Q ss_pred             EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784          285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG  364 (501)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  364 (501)
                      ..++..... .                                           ......-.....+++++++..|+.+.
T Consensus       147 ~~~~dG~~~-~-------------------------------------------~~~~~~~~~P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          147 KGGLNGVDI-Y-------------------------------------------SLVTENIQWPNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             EEETTSCCE-E-------------------------------------------EEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCCe-E-------------------------------------------EEEECCCCCceEEEEeccCCEEEEEE
Confidence            777643211 0                                           00011134567899998765555444


Q ss_pred             -CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784          365 -IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       365 -~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                       ... |..+|+.....    +.+............+++..+.++.+-...+.|..++..+++.+..+.
T Consensus       183 ~~~~~I~~~d~dg~~~----~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          183 SKLHSISSIDVNGGNR----KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             TTTTEEEEEETTSCSC----EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CCCCeEEEEecCCCce----EEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence             444 99999874321    111111112234677888766777776788899999988887766663

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.24  E-value=9.8e-05  Score=74.37  Aligned_cols=264  Identities=11%  Similarity=0.037  Sum_probs=132.1

Q ss_pred             cCcEEEEeeCCC-----------ceEEec--CCce--eeecc-CCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEec
Q 010784          177 TENVLVTSSCDH-----------SIRLWW--KGSC--QRCFK-GHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSL  239 (501)
Q Consensus       177 ~~~~l~s~~~dg-----------~i~vwd--~~~~--~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~  239 (501)
                      ++++++.|+.++           .+.+||  +++-  +..+. .+.....++++.    .++.+++.|+. +..+.+||.
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~----~~g~lyv~GG~~~~~v~~yd~  272 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD----GNGQIVVTGGNDAKKTSLYDS  272 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC----TTSCEEEECSSSTTCEEEEEG
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCC----CCCCEEEeCCCCCCceEEecC
Confidence            678888887543           477888  3221  22221 122233345553    68889999884 458999999


Q ss_pred             cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CC-----CeEEEEECCCCccccceecc-cceecCCCceee
Q 010784          240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KD-----SKVRVWDTSTSSAVRSSCCV-GMTSVPGVPVDM  312 (501)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~d-----g~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~  312 (501)
                      .+..-    ..+..+...... .++.+.+ ++++++.|+ .+     ..+.+||..+.+........ ......... .+
T Consensus       273 ~t~~W----~~~~~~~~~R~~-~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~  345 (656)
T 1k3i_A          273 SSDSW----IPGPDMQVARGY-QSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GL  345 (656)
T ss_dssp             GGTEE----EECCCCSSCCSS-CEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GG
T ss_pred             cCCce----eECCCCCccccc-cceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ce
Confidence            87642    122222221111 2334443 677888888 34     56899999876532210000 000000000 11


Q ss_pred             ecCCCeEEEEe-----------CCcEEEEEcCCCceEeeeccCC---------CcEEEEEEc-CCCcEEEEEcCC-----
Q 010784          313 KCHESMLYIAS-----------GSSVVTIDLRTMQKVMTPAICK---------PILHSFSIM-PSKSLICTGGIG-----  366 (501)
Q Consensus       313 ~~~~~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~---------~~v~~v~~~-~~~~~l~~~~~d-----  366 (501)
                      ....+.+++..           ...+..||..+.........+.         ..-.++.+. .++++++.|+.+     
T Consensus       346 ~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~  425 (656)
T 1k3i_A          346 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS  425 (656)
T ss_dssp             GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred             eecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence            11111122221           2367888988766433222111         112344443 378888888731     


Q ss_pred             -------cEEEEecCCCCCCCCCCCcccccCcccC-eEEEEecCC-eEEEEecCC-----------CcEEEEeCCCcccc
Q 010784          367 -------KAMTWDIRRSQDAVKPQPMAELDGHVGS-VTQLHMDPY-KIVTGGRDD-----------LRINIWETDTGMLA  426 (501)
Q Consensus       367 -------~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~-~~l~~gs~d-----------g~i~iwd~~~~~~~  426 (501)
                             .|.+||..+.+-.    .+..-..+... -.+++..|+ ++++.|+.+           ..+.+||..+.+-.
T Consensus       426 ~~~~~~~~v~~yd~~~~~W~----~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~  501 (656)
T 1k3i_A          426 DATTNAHIITLGEPGTSPNT----VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY  501 (656)
T ss_dssp             BCCCCEEEEECCSTTSCCEE----EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred             CcCCcceEEEcCCCCCCCee----EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence                   3566776654321    01100111111 223445566 777777643           46899998775432


Q ss_pred             cccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          427 NSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       427 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      ..-..   ......-....+.++|+.++.||.
T Consensus       502 ~~~~~---~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          502 KQNPN---SIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             ECCCC---SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ecCCC---CCccccccHhhcCCCcEEEecCCC
Confidence            21100   111122234456789999999984

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.19  E-value=0.0011  Score=65.24  Aligned_cols=56  Identities=11%  Similarity=0.064  Sum_probs=39.0

Q ss_pred             CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          411 DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       411 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      .+|.|..||+.+++.+-+.....      .+..-.....+.+++.++  .||.++.||..+++.
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~------~~~~g~~~tagglvf~g~--~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHL------PLWAGVLATAGNLVFTGT--GDGYFKAFDAKSGKE  519 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESS------CCCSCCEEETTTEEEEEC--TTSEEEEEETTTCCE
T ss_pred             CcceEEEEECCCCCEEEEecCCC------CCcccceEeCCCEEEEEC--CCCcEEEEECCCCCE
Confidence            36889999999999887664321      222223334567788887  569999999887764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.19  E-value=0.0069  Score=61.66  Aligned_cols=243  Identities=9%  Similarity=-0.049  Sum_probs=135.7

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      .+|.++.....++.+.  ...|+..++... ...... .....+..|+|.+.            ++.++++-...+.|+.
T Consensus       387 ~~C~~~~~~p~Ll~an--~~~Ir~i~l~~~-~~~~l~-~~~~~~~gl~~d~~------------~~~lY~sD~~~~~I~~  450 (791)
T 3m0c_C          387 KACKAVGSIAYLFFTN--RHEVRKMTLDRS-EYTSLI-PNLRNVVALDTEVA------------SNRIYWSDLSQRMICS  450 (791)
T ss_dssp             CCCEETTSCCEEEEEC--BSSEEEECTTSC-CCEEEE-CSCSSEEEEEEETT------------TTEEEEEETTTTEEEE
T ss_pred             ceeeeccccccccccc--ccceeEeeccCC-cceeee-cCCCceEEEeeccc------------CCeeEEeeccceeEEE
Confidence            3444444333333322  234555565542 222222 33455778888873            4556666666788888


Q ss_pred             ec-CC-----ceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784          193 WW-KG-----SCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS  265 (501)
Q Consensus       193 wd-~~-----~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  265 (501)
                      ++ .+     .....+.........|++.    ..+ +++++-...+.|.+.+++....      ...+...-.....|+
T Consensus       451 ~~l~g~~~~~~~~~vi~~~l~~P~GLAvD----~~~~~LY~tD~~~~~I~v~~ldG~~~------~~l~~~~l~~P~gIa  520 (791)
T 3m0c_C          451 TQLDRAHGVSSYDTVISRDIQAPDGLAVD----WIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIV  520 (791)
T ss_dssp             EEC--------CEEEECSSCSCCCEEEEE----TTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTTCCEEEEE
T ss_pred             EeccCCCCCcceeEEEecCCCCcceeeee----ecCCcEEEEecCCCeEEEEeCCCCeE------EEEEeCCCCCcceEE
Confidence            77 33     1222233233455667764    344 5556666778999999886542      222223334578899


Q ss_pred             EeecCCeEEEEEeCC-CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC
Q 010784          266 VAGHKSFLLVTISKD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC  344 (501)
Q Consensus       266 ~~~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  344 (501)
                      +.|..+.++++-... +.|...++.....                                            ...+...
T Consensus       521 VDp~~g~LYwtD~g~~~~I~~~~~dG~~~--------------------------------------------~~lv~~~  556 (791)
T 3m0c_C          521 VDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------------------------------------------YSLVTEN  556 (791)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSCCE--------------------------------------------EEEECSS
T ss_pred             EecCCCCEEEecCCCCCeEEEEecCCCce--------------------------------------------EEEEeCC
Confidence            988556665554333 6677777654321                                            0011112


Q ss_pred             CCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCC
Q 010784          345 KPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       345 ~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~  422 (501)
                      -.....|++++.+..|+.+. ... |...++......    .+..-...-....+|++..++++.+-...+.|...|..+
T Consensus       557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~----~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~t  632 (791)
T 3m0c_C          557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK----TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT  632 (791)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----EEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE----EEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCC
Confidence            24578899997655555544 444 888888653321    111111112345677777777777777888999999888


Q ss_pred             ccccccc
Q 010784          423 GMLANSL  429 (501)
Q Consensus       423 ~~~~~~~  429 (501)
                      |+.+..+
T Consensus       633 G~~~~~l  639 (791)
T 3m0c_C          633 GSDVNLL  639 (791)
T ss_dssp             CCCCEEE
T ss_pred             CcceEEe
Confidence            8766555

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.19  E-value=0.0017  Score=58.29  Aligned_cols=227  Identities=8%  Similarity=-0.012  Sum_probs=124.1

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC--
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH--  188 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg--  188 (501)
                      .....+++++++.++++....+.|..+|....  ....+. -......+++.+             +|+++++.....  
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~~-~~~~p~gia~~~-------------dG~l~vad~~~~~~   95 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHAT-VEGKVSGLAFTS-------------NGDLVATGWNADSI   95 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEE-CSSEEEEEEECT-------------TSCEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc--eEEEEe-CCCCceeEEEcC-------------CCcEEEEeccCCcc
Confidence            45788999999998888777888999987742  222222 235688899988             778666654332  


Q ss_pred             ceEEec--CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc--cccee--eccCCCCce
Q 010784          189 SIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ--QALKA--TLYGHEKPI  261 (501)
Q Consensus       189 ~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~~~--~~~~~~~~v  261 (501)
                      .|..+|  .++...... ........++..    +++..+++-..++.|.++|...+.....  .....  .....-...
T Consensus        96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~----~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p  171 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLPDAIFLNGITPL----SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  171 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEES----SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             eEEEEcCCCCeEEEEEeCCCccccCccccc----CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence            355555  443322111 112222344432    3444455544578888888765321000  00000  001111233


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCC-CccccceecccceecCCCceeeecCCCe-EEEEe--CCcEEEEEcCCCce
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIAS--GSSVVTIDLRTMQK  337 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i~~~d~~~~~~  337 (501)
                      ..|  +++++.++++-...+.|..+++.. ++. ....   .......+..+..++++ ++++.  .+.|.++|.. ++.
T Consensus       172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~---~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPE---IFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST  244 (306)
T ss_dssp             EEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCE---EEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred             CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccE---EEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence            455  664556667777788999999875 321 1101   11111334445554443 45554  3589999875 544


Q ss_pred             Ee--eeccCCCcEEEEEEc---CCCcEEEEEc
Q 010784          338 VM--TPAICKPILHSFSIM---PSKSLICTGG  364 (501)
Q Consensus       338 ~~--~~~~~~~~v~~v~~~---~~~~~l~~~~  364 (501)
                      ..  .+........+++|.   |++..|+.++
T Consensus       245 ~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          245 TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             EEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             EEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence            22  333334568999998   7866555554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.17  E-value=0.00013  Score=70.27  Aligned_cols=183  Identities=7%  Similarity=0.000  Sum_probs=114.5

Q ss_pred             CeEE-EEEeCCCeEEEEECCCCccccceecccceecCCCceeee----cCCCeEEEEeC-------------------Cc
Q 010784          271 SFLL-VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMK----CHESMLYIASG-------------------SS  326 (501)
Q Consensus       271 ~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------------------~~  326 (501)
                      ++++ ++...++.|.+.|+.+.+.......    .....+..+.    .+...++++..                   +.
T Consensus       101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~i----p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A          101 GRFLFMNDKANTRVARVRCDVMKCDAILEI----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEEC----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCceEeeEEeC----CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            4444 4444567899999999875443221    1112233333    33444444431                   26


Q ss_pred             EEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc---------------------------------------
Q 010784          327 VVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK---------------------------------------  367 (501)
Q Consensus       327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~---------------------------------------  367 (501)
                      +.++|..+.+...++.... ....++++|+|+++++.+.+.                                       
T Consensus       177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            8899999998887776433 456788999999988887331                                       


Q ss_pred             EEEEecCCCCCCCCCCC-cccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCccc------------ccccccC
Q 010784          368 AMTWDIRRSQDAVKPQP-MAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGML------------ANSLLCN  432 (501)
Q Consensus       368 i~iwd~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~------------~~~~~~~  432 (501)
                      |.+.|.++.+    ... +..+.. .....++.++|+  .+++++-.+.+|.++|+.+.+.            ...+.  
T Consensus       256 V~VID~~~~~----~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--  328 (595)
T 1fwx_A          256 VKVVDGRKEA----SSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--  328 (595)
T ss_dssp             EEEEECSGGG----CCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--
T ss_pred             EEEEeCcccC----CceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--
Confidence            4444444311    001 122221 234567889999  6777777899999999986531            22221  


Q ss_pred             CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          433 YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       433 ~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                          -......++|+++| ++.+... -++.|.+|++..
T Consensus       329 ----vG~gP~h~aF~~dG-~aY~t~~-ldsqV~kwdi~~  361 (595)
T 1fwx_A          329 ----LGLGPLHTAFDGRG-NAYTSLF-LDSQVVKWNIED  361 (595)
T ss_dssp             ----CCSCEEEEEECTTS-EEEEEET-TTTEEEEEEHHH
T ss_pred             ----CCCCcceEEECCCC-eEEEEEe-cCCcEEEEEhhH
Confidence                23456788999999 6655554 679999999876

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=0.0032  Score=59.57  Aligned_cols=235  Identities=11%  Similarity=0.008  Sum_probs=122.3

Q ss_pred             CcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CC----cEEEEeccCCCccccccce
Q 010784          178 ENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DA----TVRLWSLSSSGKRGQQALK  251 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg----~i~iwd~~~~~~~~~~~~~  251 (501)
                      +..|..+...+.|+.+| .+..+..+.........++|.    ++++.|+.+.. ++    .+.+.+.. +...    ..
T Consensus       149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d----~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~----~~  219 (430)
T 3tc9_A          149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWT----HEADSMIITNDQNNNDRPNNYILTRE-SGFK----VI  219 (430)
T ss_dssp             EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEEC----TTSSEEEEEECCSCTTSEEEEEEEGG-GTSC----SE
T ss_pred             CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEe----CCCCEEEEEeCCCCcccceEEEEeCC-Ccee----ee
Confidence            34454444447888888 444455544455567889996    78886665554 22    23334432 2210    01


Q ss_pred             eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784          252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID  331 (501)
Q Consensus       252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  331 (501)
                      ..+.. ......+++.|.++.++++-..++.|..++..++....                                    
T Consensus       220 ~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~------------------------------------  262 (430)
T 3tc9_A          220 TELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP------------------------------------  262 (430)
T ss_dssp             EEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE------------------------------------
T ss_pred             eeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE------------------------------------
Confidence            11111 12345677887556666666677888888887542100                                    


Q ss_pred             cCCCceEeeeccCCCcEEEEEEcCCCcEEEEE-cCCc-EEEEecCCCCCCCCCCCcccccC---------------cccC
Q 010784          332 LRTMQKVMTPAICKPILHSFSIMPSKSLICTG-GIGK-AMTWDIRRSQDAVKPQPMAELDG---------------HVGS  394 (501)
Q Consensus       332 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~---------------h~~~  394 (501)
                            +.... .......++++|+|++|+.+ .... |..++.......  ...+..+.+               .-..
T Consensus       263 ------~~~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~--~~~~~~~ag~~g~~g~~dg~~~~a~~~~  333 (430)
T 3tc9_A          263 ------LFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKR--LTTPYIVCGQQGAKDWVDGVGKKARMHA  333 (430)
T ss_dssp             ------EEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE--ECCCEEEEECTTCBCCBCEEGGGCBBSS
T ss_pred             ------EEEcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccc--ccceEEEeccCCCCCCCCCCCcceEeCC
Confidence                  00111 12345789999999855444 4445 888876532100  000011110               0112


Q ss_pred             eE-EEEec--------CC-eEEEEecCCCcEEEEeCCCcccccccccC---CC---------CCCCcceeeeEeecc-cc
Q 010784          395 VT-QLHMD--------PY-KIVTGGRDDLRINIWETDTGMLANSLLCN---YP---------EEADISTGCSAMAVS-GC  451 (501)
Q Consensus       395 v~-~l~~~--------~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~---~~---------~~~~~~v~~~~~s~~-g~  451 (501)
                      .. .++..        ++ .++++-...+.|+.++. +|+.....-..   ..         ...-.....++++++ |.
T Consensus       334 P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~  412 (430)
T 3tc9_A          334 PRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEEREC  412 (430)
T ss_dssp             EEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred             CcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCE
Confidence            23 45553        44 67777667788999883 45433222110   00         001224678999995 55


Q ss_pred             EEEEeecCCCceEEEeecc
Q 010784          452 RIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       452 ~l~s~~~d~~g~i~~w~~~  470 (501)
                      ++++-.  ...+|+.++.+
T Consensus       413 lyVaD~--~n~rIr~i~~e  429 (430)
T 3tc9_A          413 FFIGDR--ENRRIRKIGYE  429 (430)
T ss_dssp             EEEEEG--GGTEEEEEEEC
T ss_pred             EEEEEC--CCCeEEEEccC
Confidence            555444  45778777653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.08  E-value=0.0024  Score=55.07  Aligned_cols=204  Identities=10%  Similarity=0.025  Sum_probs=122.4

Q ss_pred             eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEE-EEeC--CcEEE
Q 010784          253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLY-IASG--SSVVT  329 (501)
Q Consensus       253 ~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~i~~  329 (501)
                      .+.+-...+..+++.|.++.++++...++.|...|.. ++.++......    ......+.+.++..+ ++..  +.+.+
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g----~~D~EGIa~~~~g~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF----VKDLETIEYIGDNQFVISDERDYAIYV   95 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS----CSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC----CCChHHeEEeCCCEEEEEECCCCcEEE
Confidence            4556666799999998666677778889999999997 65544332211    123444454444444 4443  36777


Q ss_pred             EEcCCCce---Eeeec------cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc-------cCcc
Q 010784          330 IDLRTMQK---VMTPA------ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL-------DGHV  392 (501)
Q Consensus       330 ~d~~~~~~---~~~~~------~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~-------~~h~  392 (501)
                      +++.....   +....      ........++++|.++.|.++.+.. ..+|.+.. ...  ...+..+       ..+.
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~--~~~l~i~~~~~~~~~~~~  172 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLS--SNELHISKDKALQRQFTL  172 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTC--SSCCEEEECHHHHHTCCS
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-ccc--CCceeeecchhhcccccc
Confidence            77655432   12221      1244578999999987777776554 55555541 100  0011111       1123


Q ss_pred             cCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCC----CCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784          393 GSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPE----EADISTGCSAMAVSGCRIVTASYGEPGLLQF  466 (501)
Q Consensus       393 ~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~  466 (501)
                      ..+.+++++|.  ++++.+.....+..+|.. |+.+..+......    .....-..++|.++|++.++ +  +.+.++.
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s--E~n~~y~  248 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S--EPNRFYR  248 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E--TTTEEEE
T ss_pred             CCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c--CCceEEE
Confidence            35789999998  777777788999999965 6666555332100    01124578999999986666 4  5565555


Q ss_pred             ee
Q 010784          467 RD  468 (501)
Q Consensus       467 w~  468 (501)
                      +.
T Consensus       249 f~  250 (255)
T 3qqz_A          249 FT  250 (255)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.00  E-value=0.0086  Score=54.29  Aligned_cols=233  Identities=10%  Similarity=0.047  Sum_probs=120.5

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceec---ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL---SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~---~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      .+..|.+++ +..++.|. .+.+.  ....+.+.-...   ..+.+.+..+.+.+             ++..++.+. +|
T Consensus        81 ~~~~i~~~~-~~~~~~g~-~g~i~--~S~DgG~tW~~~~~~~~~~~~~~~i~~~~-------------~~~~~~~~~-~g  142 (327)
T 2xbg_A           81 RFNSVSFQG-NEGWIVGE-PPIML--HTTDGGQSWSQIPLDPKLPGSPRLIKALG-------------NGSAEMITN-VG  142 (327)
T ss_dssp             EEEEEEEET-TEEEEEEE-TTEEE--EESSTTSSCEECCCCTTCSSCEEEEEEEE-------------TTEEEEEET-TC
T ss_pred             cEEEEEecC-CeEEEEEC-CCeEE--EECCCCCCceECccccCCCCCeEEEEEEC-------------CCCEEEEeC-Cc
Confidence            467888887 45555553 33332  222211211111   12345577888766             566666554 56


Q ss_pred             ce-EEecCCceeee-ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784          189 SI-RLWWKGSCQRC-FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       189 ~i-~vwd~~~~~~~-~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                      .| +-.|.++.-.. ...+...+..+.+.    +++.+++.+...+..+-+|-. +..   +..+  .......+..+.+
T Consensus       143 ~v~~S~DgG~tW~~~~~~~~~~~~~~~~~----~~~~~~~~g~~G~~~~S~d~g-G~t---W~~~--~~~~~~~~~~~~~  212 (327)
T 2xbg_A          143 AIYRTKDSGKNWQALVQEAIGVMRNLNRS----PSGEYVAVSSRGSFYSTWEPG-QTA---WEPH--NRTTSRRLHNMGF  212 (327)
T ss_dssp             CEEEESSTTSSEEEEECSCCCCEEEEEEC----TTSCEEEEETTSSEEEEECTT-CSS---CEEE--ECCSSSCEEEEEE
T ss_pred             cEEEEcCCCCCCEEeecCCCcceEEEEEc----CCCcEEEEECCCcEEEEeCCC-CCc---eeEC--CCCCCCccceeEE
Confidence            55 33454433222 23455678888885    667777666443333333321 111   1111  1234556788888


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee-ccCC
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP-AICK  345 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~  345 (501)
                      .+ ++. ++.++.+|.+++.+...++.                                    |..     +..- ..+.
T Consensus       213 ~~-~g~-~~~~~~~G~~~~s~~D~G~t------------------------------------W~~-----~~~~~~~~~  249 (327)
T 2xbg_A          213 TP-DGR-LWMIVNGGKIAFSDPDNSEN------------------------------------WGE-----LLSPLRRNS  249 (327)
T ss_dssp             CT-TSC-EEEEETTTEEEEEETTEEEE------------------------------------ECC-----CBCTTSSCC
T ss_pred             CC-CCC-EEEEeCCceEEEecCCCCCe------------------------------------eEe-----ccCCcccCC
Confidence            76 454 44556678777664322211                                    000     0000 0012


Q ss_pred             CcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeC
Q 010784          346 PILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWET  420 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~  420 (501)
                      ..+.++.+.+++.+++++..+.| .+....++.   ...+.........+.++.+.++ .+++.| .+|.|.-++-
T Consensus       250 ~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~t---W~~~~~~~~~~~~~~~v~~~~~~~~~~~G-~~G~i~~~~~  320 (327)
T 2xbg_A          250 VGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQT---WQQDVDVKKVPSNFYKILFFSPDQGFILG-QKGILLRYVT  320 (327)
T ss_dssp             SCEEEEEESSSSCEEEEESTTCE-EEESSTTSS---CEECGGGTTSSSCCCEEEEEETTEEEEEC-STTEEEEECC
T ss_pred             cceEEEEecCCCEEEEEeCCCeE-EEeCCCCcc---cEEcCccCCCCCCeEEEEEECCCceEEEc-CCceEEEEcC
Confidence            35788889888888888776655 333333322   1111211122356788888666 777765 8898777653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.99  E-value=0.0088  Score=60.87  Aligned_cols=225  Identities=8%  Similarity=-0.044  Sum_probs=127.0

Q ss_pred             CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce-ecccceecCCCc
Q 010784          231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS-CCVGMTSVPGVP  309 (501)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~  309 (501)
                      ...|+..++.....      .. +......+..|++.+.++.++++-...+.|+.+++......... ...........-
T Consensus       403 ~~~Ir~i~l~~~~~------~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          403 RHEVRKMTLDRSEY------TS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  475 (791)
T ss_dssp             BSSEEEECTTSCCC------EE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             ccceeEeeccCCcc------ee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence            45688888876542      22 22334566789998766777777777888999998753210000 111100111223


Q ss_pred             eeeecCCCeEEEEeCC--cEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCC-c-EEEEecCCCCCCCCCCC
Q 010784          310 VDMKCHESMLYIASGS--SVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIG-K-AMTWDIRRSQDAVKPQP  384 (501)
Q Consensus       310 ~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~  384 (501)
                      +++.+....+|++...  .|.+.++........+...-.....|++.|. +.++++-... . |...++......     
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-----  550 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-----  550 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-----
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-----
Confidence            4445556677777643  7888888765544444334456889999997 4444444332 4 888887653321     


Q ss_pred             cccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc
Q 010784          385 MAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG  462 (501)
Q Consensus       385 ~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g  462 (501)
                       ..+...-...+.|++++.  +++++-...+.|...++.. .....+....  ..-....+|++  ++.+|+.+.. ..+
T Consensus       551 -~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~--~~l~~P~glav--~~~~lYwtD~-~~~  623 (791)
T 3m0c_C          551 -SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDE--KRLAHPFSLAV--FEDKVFWTDI-INE  623 (791)
T ss_dssp             -EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECT--TTTSSEEEEEE--ETTEEEEEET-TTT
T ss_pred             -EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-CceEEEecCC--CccCCCCEEEE--eCCEEEEEEC-CCC
Confidence             122222356889999976  7777766778899999864 3333332110  11122334554  4445555544 567


Q ss_pred             eEEEeeccCCcc
Q 010784          463 LLQFRDFSNATC  474 (501)
Q Consensus       463 ~i~~w~~~~~~~  474 (501)
                      .|...+..++..
T Consensus       624 ~I~~~dk~tG~~  635 (791)
T 3m0c_C          624 AIFSANRLTGSD  635 (791)
T ss_dssp             EEEEEETTTCCC
T ss_pred             EEEEEeCCCCcc
Confidence            787777555543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.97  E-value=0.016  Score=61.76  Aligned_cols=323  Identities=11%  Similarity=0.077  Sum_probs=162.0

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CCc
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DHS  189 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~  189 (501)
                      .|.+.+.+.....+++   .+.+.++.+..+. ..... ..-.+.|.|+++.|..+.       ...+++++.|.. |++
T Consensus       515 ~I~~As~n~~~vvva~---g~~l~~fel~~~~L~~~~~-~~l~~evscl~i~~~~~~-------~~~s~~~aVg~~~d~t  583 (1158)
T 3ei3_A          515 NISVASCNSSQVVVAV---GRALYYLQIHPQELRQISH-TEMEHEVACLDITPLGDS-------NGLSPLCAIGLWTDIS  583 (1158)
T ss_dssp             CCCEEEECSSEEEEEE---TTEEEEEEEETTEEEEEEE-EECSSCEEEEECCCCSSS-------TTCCSEEEEEETTTTE
T ss_pred             EEEEEEeCCCEEEEEE---CCEEEEEEeeCCceeeecc-cCCCCceEEEEeecCCCC-------cccccEEEEEECCCCE
Confidence            4777776665444443   3556666665421 11111 122457999998763210       113579999996 999


Q ss_pred             eEEec--CCceee--eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee-eccCCCCceeEE
Q 010784          190 IRLWW--KGSCQR--CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA-TLYGHEKPIKLM  264 (501)
Q Consensus       190 i~vwd--~~~~~~--~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~l  264 (501)
                      |+|++  ..+.+.  .+.. .....++.+...  ....+|..|-.||.+..+.++....  ...... .+-+ ..++.-.
T Consensus       584 v~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~--~~~~~L~igl~dG~l~~~~~d~~tg--~l~d~r~~~LG-~~pv~L~  657 (1158)
T 3ei3_A          584 ARILKLPSFELLHKEMLGG-EIIPRSILMTTF--ESSHYLLCALGDGALFYFGLNIETG--LLSDRKKVTLG-TQPTVLR  657 (1158)
T ss_dssp             EEEEETTTCCEEEEEECCS-SCCEEEEEEEEE--TTEEEEEEEETTSEEEEEEECTTTC--CEEEEEEEECC-SSCCEEE
T ss_pred             EEEEECCCCCeEEEEECCC-CCCCcEEEEEEe--CCCcEEEEEeCCCeEEEEEEcCCCC--ccccceeEEcC-CCceEEE
Confidence            99998  222222  2221 223444444211  2456899999999987776653210  011111 1222 3455544


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCC----CceeeecCCCeEEEEeCCcEEEEEcCCCceE--
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG----VPVDMKCHESMLYIASGSSVVTIDLRTMQKV--  338 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--  338 (501)
                      .+...+...+++.| +....++--+ ++....     ......    ..+.-...++.+++++++.+++..+...+..  
T Consensus       658 ~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s-----~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~  730 (1158)
T 3ei3_A          658 TFRSLSTTNVFACS-DRPTVIYSSN-HKLVFS-----NVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHI  730 (1158)
T ss_dssp             EEESSSCEEEEEES-SSCEEEEESS-SSEEEE-----EBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEE
T ss_pred             EEeeCCceeEEEEC-CCCEEEEEcC-CceEEe-----ccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeE
Confidence            44432333333333 3444444432 221110     001111    1111122467777888888888877544332  


Q ss_pred             eeeccCCCcEEEEEEcCCCcEEEEEcCC-------------------------------------------------c-E
Q 010784          339 MTPAICKPILHSFSIMPSKSLICTGGIG-------------------------------------------------K-A  368 (501)
Q Consensus       339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d-------------------------------------------------~-i  368 (501)
                      +++. -...+..++++|+.+.++.+..+                                                 . |
T Consensus       731 ~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i  809 (1158)
T 3ei3_A          731 RTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNL  809 (1158)
T ss_dssp             EEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEE
T ss_pred             EEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEE
Confidence            2232 24567888888876554443311                                                 1 4


Q ss_pred             EEEecCCCCCCCCCCCcccccCcccCeEEEE---ecCC--eEEEEec----------CCCcEEEEeCCCcccccccccCC
Q 010784          369 MTWDIRRSQDAVKPQPMAELDGHVGSVTQLH---MDPY--KIVTGGR----------DDLRINIWETDTGMLANSLLCNY  433 (501)
Q Consensus       369 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~---~~~~--~~l~~gs----------~dg~i~iwd~~~~~~~~~~~~~~  433 (501)
                      ++.|-.+.+.+    ....+.. ...+.+++   +..+  .+++.|+          ..|.|++|++..+++.....   
T Consensus       810 ~lidp~t~~~i----~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~---  881 (1158)
T 3ei3_A          810 LIIDQHTFEVL----HAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE---  881 (1158)
T ss_dssp             EEEETTTCCEE----EEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE---
T ss_pred             EEEeCCCCeEE----EEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE---
Confidence            55555443321    0012222 23455554   3332  5666654          35789999997443222221   


Q ss_pred             CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          434 PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       434 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                       ....+++++++-- +|+++++.+    ..|++|++...+
T Consensus       882 -~~v~g~v~al~~~-~g~Lla~ig----~~l~vy~l~~~~  915 (1158)
T 3ei3_A          882 -KEVKGAVYSMVEF-NGKLLASIN----STVRLYEWTTEK  915 (1158)
T ss_dssp             -EEESSCEEEEEEE-TTEEEEEET----TEEEEEEECTTS
T ss_pred             -EEcCCcCEEEeee-CCEEEEEcC----CEEEEEECCCCc
Confidence             1224566665432 455555443    689999998664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.96  E-value=0.0076  Score=56.93  Aligned_cols=234  Identities=9%  Similarity=0.018  Sum_probs=122.7

Q ss_pred             CcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---C-cEEEEeccCCCcccccccee
Q 010784          178 ENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---A-TVRLWSLSSSGKRGQQALKA  252 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g-~i~iwd~~~~~~~~~~~~~~  252 (501)
                      ++++++-. .+.|+.+| ....+..+.........+++.    ++++++++...+   . .+...+......     ...
T Consensus       153 g~Lyv~D~-~~~I~~id~~~g~v~~~~~~~~~P~giavd----~dG~lyVad~~~~~~~~gv~~~~~~~~~~-----~~~  222 (433)
T 4hw6_A          153 DDLYWVGQ-RDAFRHVDFVNQYVDIKTTNIGQCADVNFT----LNGDMVVVDDQSSDTNTGIYLFTRASGFT-----ERL  222 (433)
T ss_dssp             CEEEEECB-TSCEEEEETTTTEEEEECCCCSCEEEEEEC----TTCCEEEEECCSCTTSEEEEEECGGGTTC-----CEE
T ss_pred             CEEEEEeC-CCCEEEEECCCCEEEEeecCCCCccEEEEC----CCCCEEEEcCCCCcccceEEEEECCCCee-----ccc
Confidence            45544433 38898898 344555554455568899996    788844443321   1 133333322111     001


Q ss_pred             eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784          253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL  332 (501)
Q Consensus       253 ~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~  332 (501)
                      .+. .-.....+++.+.++.++++-..++.|+.+|..++......                                   
T Consensus       223 ~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-----------------------------------  266 (433)
T 4hw6_A          223 SLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-----------------------------------  266 (433)
T ss_dssp             EEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-----------------------------------
T ss_pred             ccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-----------------------------------
Confidence            111 12233456777645666666556778888887755321000                                   


Q ss_pred             CCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccC---------------cccCe
Q 010784          333 RTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDG---------------HVGSV  395 (501)
Q Consensus       333 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~---------------h~~~v  395 (501)
                            ... +....-..++++|+++.|+.+. ... |+.++.......  ......+.+               .-...
T Consensus       267 ------~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~--~~~~~~~ag~~g~~g~~dg~~~~a~~~~P  337 (433)
T 4hw6_A          267 ------VMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK--LAVPYIVCGQHSSPGWVDGMGTGARLWGP  337 (433)
T ss_dssp             ------EEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC--BCCCEEEEECTTCCCCBCEEGGGSBCSSE
T ss_pred             ------ecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc--cCcEEEEEecCCCCccCCCcccceEEcCC
Confidence                  000 0011224699999998555444 445 888876532110  000011111               11235


Q ss_pred             EEEEe---------cCC-eEEEEecCCCcEEEEeCCCcccccccccCCC-------------CCCCcceeeeEee-cccc
Q 010784          396 TQLHM---------DPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP-------------EEADISTGCSAMA-VSGC  451 (501)
Q Consensus       396 ~~l~~---------~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~s-~~g~  451 (501)
                      ..+++         .++ .++++-...+.|+.++. +|... ++.+...             ...-.....++++ ++|.
T Consensus       338 ~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~  415 (433)
T 4hw6_A          338 NQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC  415 (433)
T ss_dssp             EEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred             ccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE
Confidence            67888         677 78888778889999985 55433 3321100             0012235678998 5666


Q ss_pred             EEEEeecCCCceEEEeecc
Q 010784          452 RIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       452 ~l~s~~~d~~g~i~~w~~~  470 (501)
                      ++++=.  ...+|+..+.+
T Consensus       416 lyVaD~--~n~rIr~i~~e  432 (433)
T 4hw6_A          416 FYIGDC--DNHRVRKIAPE  432 (433)
T ss_dssp             EEEEEG--GGTEEEEEEEC
T ss_pred             EEEEeC--CCCEEEEEecC
Confidence            555544  45778777653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.92  E-value=0.014  Score=54.43  Aligned_cols=232  Identities=11%  Similarity=-0.057  Sum_probs=128.3

Q ss_pred             EEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784          180 VLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       180 ~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      +|+.+. ...|+..+ .+.....+......+..|+|.    +. +.++++-...+.|+.++++......  .....+...
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d----~~~~~lywsD~~~~~I~~~~~~g~~~~~--~~~~~~~~~  157 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTE----VASNRIYWSDLSQRMICSTQLDRAHGVS--SYDTVISRD  157 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEE----TTTTEEEEEETTTTEEEEEEC------C--CCEEEECSS
T ss_pred             eeEEec-cceeEEEccCCcceeEeccccCcceEEeee----eccCceEEEecCCCeEEEEEcccCCCCC--cceEEEeCC
Confidence            444443 35677777 333333333445678899996    44 4455554567888888887532000  012222323


Q ss_pred             CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784          258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  337 (501)
                      ......+++.+..++++++-...+.|.+.++......                                           
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~-------------------------------------------  194 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-------------------------------------------  194 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE-------------------------------------------
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceE-------------------------------------------
Confidence            3456788888656777777777788888887654210                                           


Q ss_pred             EeeeccCCCcEEEEEEcCCCcE-EEEEcC-Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCC
Q 010784          338 VMTPAICKPILHSFSIMPSKSL-ICTGGI-GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDD  412 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~-l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~d  412 (501)
                       ..+...-.....++++|.+.. +.+-.. .. |...++......      ......-...+.|++++.  +++.+-+..
T Consensus       195 -~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~------~~~~~~l~~P~glavd~~~~~lY~aD~~~  267 (400)
T 3p5b_L          195 -TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY------SLVTENIQWPNGITLDLLSGRLYWVDSKL  267 (400)
T ss_dssp             -EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE------EEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             -EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE------EEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence             011112334678999986444 444332 24 888887653321      112222356789999976  777776678


Q ss_pred             CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          413 LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       413 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      +.|..+|+.. .....+...  ........++++. .+.++++-.  ..+.|..++..++..
T Consensus       268 ~~I~~~d~dG-~~~~~~~~~--~~~l~~P~gl~v~-~~~lywtd~--~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          268 HSISSIDVNG-GNRKTILED--EKRLAHPFSLAVF-EDKVFWTDI--INEAIFSANRLTGSD  323 (400)
T ss_dssp             TEEEEEETTS-CCCEEEEEC--SSTTSSEEEEEEE-TTEEEEEES--SSCSEEEEESSSCCC
T ss_pred             CEEEEEeCCC-CccEEEEeC--CCCCCCCEEEEEe-CCEEEEecC--CCCeEEEEEcCCCCc
Confidence            8999999864 333333211  0112233455652 333444443  567888888555443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.91  E-value=0.00012  Score=73.83  Aligned_cols=228  Identities=10%  Similarity=-0.027  Sum_probs=120.9

Q ss_pred             eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC----ceee-eccCC
Q 010784          132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG----SCQR-CFKGH  205 (501)
Q Consensus       132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~----~~~~-~~~~h  205 (501)
                      +.|++.++.+. .....+.. ...+..|+|.+.            ++.++++-...+.|+.++ .+    .... .+...
T Consensus       386 ~~I~~id~~~~-~~~~~~~~-~~~p~gla~d~~------------~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~  451 (699)
T 1n7d_A          386 HEVRKMTLDRS-EYTSLIPN-LRNVVALDTEVA------------SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD  451 (699)
T ss_dssp             TC-CEECTTSC-CEECCSCC-CTTCCCCEEETT------------TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC
T ss_pred             cceEEEeCCCC-cceeeecc-CcceEEEccccc------------cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC
Confidence            45666666642 33333322 234667888872            344555555668888887 32    1222 22111


Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-CeEE
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-SKVR  284 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-g~v~  284 (501)
                      ......|++.   ...++++++-...+.|.+.++.....      ...+.........|++.|..+.++++-... +.|.
T Consensus       452 ~~~P~glavD---~~~g~LY~tD~~~~~I~v~d~dg~~~------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~  522 (699)
T 1n7d_A          452 IQAPDGLAVD---WIHSNIYWTDSVLGTVSVADTKGVKR------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIK  522 (699)
T ss_dssp             C--CCCEECC---CSSSBCEECCTTTSCEEEEBSSSCCE------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEE
T ss_pred             CCCcceEEEE---eeCCcEEEEeccCCeEEEEecCCCce------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEE
Confidence            2234456653   13455566656678899999876431      222222223346778877555544443222 5566


Q ss_pred             EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC-cEEEEE
Q 010784          285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK-SLICTG  363 (501)
Q Consensus       285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~  363 (501)
                      ++++......                                          .  .....-.....|+++|++ +++++-
T Consensus       523 ~~~~dG~~~~------------------------------------------~--l~~~~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          523 KGGLNGVDIY------------------------------------------S--LVTENIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             BCCSSSCCCC------------------------------------------E--ESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred             EEeCCCCCee------------------------------------------E--EEeCCCCCccEEEEeccCCEEEEEe
Confidence            6555432100                                          0  000112334578999875 444444


Q ss_pred             cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784          364 GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       364 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                      +... |..+++......    .+............|++..+.++++....+.|..++..+++.+..+.
T Consensus       559 ~~~~~I~~~d~dG~~~~----~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          559 SKLHSISSIDVNGGNRK----TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             TTTTEEEEECSSSSCCE----EECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             cCCCeEEEEccCCCceE----EEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence            4555 999998643211    11111111233456677777677666678899999998888877773

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.89  E-value=0.013  Score=52.85  Aligned_cols=220  Identities=11%  Similarity=-0.052  Sum_probs=123.4

Q ss_pred             CceEEec-CCceeeeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCC---CccccccceeeccCCCCcee
Q 010784          188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSS---GKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~v~  262 (501)
                      ..|+..| .+.....+.........++|.    +. +.++++-..++.|..++++..   ..     ....+...-....
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d----~~~~~ly~~D~~~~~I~~~~~~g~~~~~~-----~~~~~~~~~~~p~   80 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTE----VASNRIYWSDLSQRMICSTQLDRAHGVSS-----YDTVISRDIQAPD   80 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEE----TTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCC
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEE----eCCCEEEEEECCCCcEEEEECCCCCCCcc-----cEEEEeCCCCCcC
Confidence            4577777 322222222234567788986    44 445555556789999998762   11     1112222223456


Q ss_pred             EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784          263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA  342 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  342 (501)
                      .+++.+.+++++++-...+.|.+.++......                                            ....
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~--------------------------------------------~~~~  116 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--------------------------------------------TLFR  116 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEE--------------------------------------------EEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceE--------------------------------------------EEEE
Confidence            78887656666677677788888887643210                                            0011


Q ss_pred             cCCCcEEEEEEcCCC-cEEEEEcCC-c-EEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC--eEEEEecCCCcEE
Q 010784          343 ICKPILHSFSIMPSK-SLICTGGIG-K-AMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY--KIVTGGRDDLRIN  416 (501)
Q Consensus       343 ~~~~~v~~v~~~~~~-~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~--~~l~~gs~dg~i~  416 (501)
                      ........++++|.+ .++++.... . |...++.....       ..+ ...-...+.|+++++  +++.+-+..+.|.
T Consensus       117 ~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-------~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~  189 (316)
T 1ijq_A          117 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  189 (316)
T ss_dssp             CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-------EEEEECCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence            112456789999854 444444333 4 88887753221       122 122346789999976  7777777788999


Q ss_pred             EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784          417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                      .+|+.. .....+...  .........+++. .+..+++-.  ..+.|..++..++.
T Consensus       190 ~~d~dg-~~~~~~~~~--~~~~~~P~giav~-~~~ly~~d~--~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          190 SIDVNG-GNRKTILED--EKRLAHPFSLAVF-EDKVFWTDI--INEAIFSANRLTGS  240 (316)
T ss_dssp             EEETTS-CSCEEEEEC--TTTTSSEEEEEEE-TTEEEEEET--TTTEEEEEETTTCC
T ss_pred             EEecCC-CceEEEeec--CCccCCcEEEEEE-CCEEEEEEC--CCCeEEEEeCCCCc
Confidence            999864 333333211  0112234567774 344444443  56888888865554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.89  E-value=0.013  Score=53.03  Aligned_cols=273  Identities=8%  Similarity=-0.002  Sum_probs=138.7

Q ss_pred             CCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec----ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL----SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~----~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      ...+.+|.+.+++..++.|.. +.|. ...+.+ +.-...    ......+.+|.|.+              +..++ ++
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~-g~i~-~s~DgG-~tW~~~~~~~~~~~~~~~~i~~~~--------------~~~~~-~g   96 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVN-ATLM-ETRDGG-QTWEPRTLVLDHSDYRFNSVSFQG--------------NEGWI-VG   96 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETT-TEEE-EESSTT-SSCEECCCCCSCCCCEEEEEEEET--------------TEEEE-EE
T ss_pred             CCcEEEEEECCCCcEEEEcCC-CeEE-EeCCCC-CCCeECCCCCCCCCccEEEEEecC--------------CeEEE-EE
Confidence            345888888877777776654 4332 222222 211111    12344688888865              34444 45


Q ss_pred             CCCceEEec-CCceeeecc---CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC-CCccccccceeeccCCCCc
Q 010784          186 CDHSIRLWW-KGSCQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS-SGKRGQQALKATLYGHEKP  260 (501)
Q Consensus       186 ~dg~i~vwd-~~~~~~~~~---~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~  260 (501)
                      .+|.|..-. .++.-....   .+.+.+..+.+.    .++..++.+ .+|.|  |.... +..     -..........
T Consensus        97 ~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~----~~~~~~~~~-~~g~v--~~S~DgG~t-----W~~~~~~~~~~  164 (327)
T 2xbg_A           97 EPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKAL----GNGSAEMIT-NVGAI--YRTKDSGKN-----WQALVQEAIGV  164 (327)
T ss_dssp             ETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEE----ETTEEEEEE-TTCCE--EEESSTTSS-----EEEEECSCCCC
T ss_pred             CCCeEEEECCCCCCceECccccCCCCCeEEEEEE----CCCCEEEEe-CCccE--EEEcCCCCC-----CEEeecCCCcc
Confidence            566555543 333322221   233457777765    445555554 45644  32222 321     11222344557


Q ss_pred             eeEEEEeecCCeEEEEEeCCCeEEE-EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          261 IKLMSVAGHKSFLLVTISKDSKVRV-WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       261 v~~l~~~~~~~~~l~s~s~dg~v~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      +..+.+.+ ++.+++.+ .+|.+.. .|- .++.                                         .+.+.
T Consensus       165 ~~~~~~~~-~~~~~~~g-~~G~~~~S~d~-gG~t-----------------------------------------W~~~~  200 (327)
T 2xbg_A          165 MRNLNRSP-SGEYVAVS-SRGSFYSTWEP-GQTA-----------------------------------------WEPHN  200 (327)
T ss_dssp             EEEEEECT-TSCEEEEE-TTSSEEEEECT-TCSS-----------------------------------------CEEEE
T ss_pred             eEEEEEcC-CCcEEEEE-CCCcEEEEeCC-CCCc-----------------------------------------eeECC
Confidence            88888886 55555554 4454433 332 1110                                         00110


Q ss_pred             eeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784          340 TPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i  417 (501)
                        ......+..+.+.+++.+++.+..+.+++.+...++.   ...+..- ..+...+.++.+.++ .+++++ .+|.| +
T Consensus       201 --~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t---W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~  273 (327)
T 2xbg_A          201 --RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN---WGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-L  273 (327)
T ss_dssp             --CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEE---ECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-E
T ss_pred             --CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCe---eEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-E
Confidence              1124567788888988877766554476663221211   0001110 012235888989887 777776 57777 4


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      +....|+.-..+...  ......+..+.|.+++..+++|   .+|.|.-++
T Consensus       274 ~S~DgG~tW~~~~~~--~~~~~~~~~v~~~~~~~~~~~G---~~G~i~~~~  319 (327)
T 2xbg_A          274 CSQDGGQTWQQDVDV--KKVPSNFYKILFFSPDQGFILG---QKGILLRYV  319 (327)
T ss_dssp             EESSTTSSCEECGGG--TTSSSCCCEEEEEETTEEEEEC---STTEEEEEC
T ss_pred             EeCCCCcccEEcCcc--CCCCCCeEEEEEECCCceEEEc---CCceEEEEc
Confidence            444545433333211  1123456788887666655544   558776655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.89  E-value=4.4e-06  Score=76.72  Aligned_cols=48  Identities=21%  Similarity=0.336  Sum_probs=42.6

Q ss_pred             CcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHH
Q 010784           17 TTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLF   64 (501)
Q Consensus        17 ~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~   64 (501)
                      ...+.+||+|++.+||+||+.+|+.++++|||+|+.++.+..+|+.+-
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~   53 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD   53 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEE
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeec
Confidence            456788999999999999999999999999999999998888887543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.88  E-value=0.025  Score=56.02  Aligned_cols=321  Identities=12%  Similarity=0.021  Sum_probs=172.1

Q ss_pred             CCCceEEeeC-CcEEEeecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-C
Q 010784          111 KPHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-D  187 (501)
Q Consensus       111 ~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d  187 (501)
                      ..+..|++++ .+.+..+-...+.|.+.+...  ....++ ...-.....|++.|.            .|.+++|--. .
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG--~~~~~l~~~~l~~P~~Iavdp~------------~g~ly~tD~g~~  149 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFWQELDQPRAIALDPS------------SGFMYWTDWGEV  149 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSSCSCCCCEEEETT------------TTEEEEEECSSS
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCC--CCEEEEEeCCCCCCceEEEecC------------CCeEEEeccCCC
Confidence            4578899997 666777777789999999874  333333 244456778899883            3445554322 3


Q ss_pred             CceEEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEE-EeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          188 HSIRLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILA-SGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       188 g~i~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      +.|...+ .|.....+. ..-.....|++.    +++..|+ +-...+.|...|++....      .....+.......|
T Consensus       150 ~~I~r~~~dG~~~~~l~~~~~~~P~Glald----~~~~~LY~aD~~~~~I~~~~~dG~~~------~~~~~~~~~~P~gi  219 (619)
T 3s94_A          150 PKIERAGMDGSSRFIIINSEIYWPNGLTLD----YEEQKLYWADAKLNFIHKSNLDGTNR------QAVVKGSLPHPFAL  219 (619)
T ss_dssp             CEEEEEETTSCSCEEEECSSCSSEEEEEEE----TTTTEEEEEETTTCCEEEESSSCCEE------C---------CCCE
T ss_pred             CEEEEEECCCCceEEEEeCCCCCCcEEEEE----ccCCEEEEEeCCCCeEEEecCCCCcc------EEEEeCCCCCceEE
Confidence            4555555 444433332 233456788885    5444544 444567888888875432      11111111122355


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCcccccee----------cccce-ec-----------CCCceee----------
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC----------CVGMT-SV-----------PGVPVDM----------  312 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~----------~~~~~-~~-----------~~~~~~~----------  312 (501)
                      ++.  .+.++++-...+.|...|..+++......          ..+.. .+           ...-.++          
T Consensus       220 ~~~--~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C  297 (619)
T 3s94_A          220 TLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQC  297 (619)
T ss_dssp             EES--SSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEE
T ss_pred             EEe--CCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceE
Confidence            665  33566665667888888887665321100          00000 00           0000111          


Q ss_pred             ec----------------CCCeEEEEeCCcEEEEEcCCCceEe-eec-cCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEe
Q 010784          313 KC----------------HESMLYIASGSSVVTIDLRTMQKVM-TPA-ICKPILHSFSIMPS-KSLICTGGIGK-AMTWD  372 (501)
Q Consensus       313 ~~----------------~~~~~~~~~~~~i~~~d~~~~~~~~-~~~-~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd  372 (501)
                      .+                ....++++....|+..++....... .+. ..-..+.+++|.+. +.++++-...+ |+.++
T Consensus       298 ~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~  377 (619)
T 3s94_A          298 ACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSF  377 (619)
T ss_dssp             ECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEE
Confidence            00                1113444555677777776543211 111 11345788999985 44455544555 98888


Q ss_pred             cCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784          373 IRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG  450 (501)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  450 (501)
                      +......      ..+...-.....+++++.  .++.+-+..+.|.+.++... ....+..    ..-.....+++.|..
T Consensus       378 ~~g~~~~------~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~----~~l~~P~~iavdp~~  446 (619)
T 3s94_A          378 IDGSGSQ------FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILIS----EDLEEPRAIVLDPMV  446 (619)
T ss_dssp             TTSCSCE------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC----TTCCSEEEEEEETTT
T ss_pred             cCCCccE------EEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEE----CCCCCeeeEEEEcCC
Confidence            8754321      122222345678888863  78887778899999998643 3333321    123456789999874


Q ss_pred             cEEEEeecCCCceEEEee
Q 010784          451 CRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       451 ~~l~s~~~d~~g~i~~w~  468 (501)
                      .+|+.+.......|...+
T Consensus       447 G~ly~tD~g~~~~I~r~~  464 (619)
T 3s94_A          447 GYMYWTDWGEIPKIERAA  464 (619)
T ss_dssp             TEEEEEECSSSCEEEEEE
T ss_pred             CcEEEecCCCCCEEEEEc
Confidence            444443321224444444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.87  E-value=0.0033  Score=64.25  Aligned_cols=153  Identities=11%  Similarity=0.047  Sum_probs=88.7

Q ss_pred             CceEEee-CCcEEEee-----cCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784          113 HDHILLD-NNDIFSTQ-----GSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS  185 (501)
Q Consensus       113 i~~~~~~-~~~~~~~~-----g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  185 (501)
                      +....+| |||+++|.     |+....|.++|+.++ ......+.   .....+.|+|             ||+.|+...
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-------------Dg~~l~y~~  239 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-------------DHTSLFYVT  239 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-------------STTEEEEEE
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-------------CCCEEEEEE
Confidence            5678999 99998884     334467999999875 32211121   1245678888             787777766


Q ss_pred             CCC-----ceEEec--CCce--eeecc-CCCCceEEEEeeecCCCCCCEEEEeeC---CCcEEEEeccCCCccccccc--
Q 010784          186 CDH-----SIRLWW--KGSC--QRCFK-GHNGPVSTLSDKLLGDGSGKILASGGE---DATVRLWSLSSSGKRGQQAL--  250 (501)
Q Consensus       186 ~dg-----~i~vwd--~~~~--~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~--  250 (501)
                      .|.     .|.+++  ++..  ...+. ........+.|+    ++|++|+..+.   ...|.++|+.++..    ..  
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S----pDg~~l~~~~~~~~~~~l~~~d~~~~~~----~~~~  311 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA----ADTNTLCIGSQSPETAEVHLLDLRKGNA----HNTL  311 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC----TTSSEEEEEEECSSCEEEEEEESSSCTT----CCCE
T ss_pred             ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC----CCCCEEEEEecCCCCceEEEEECCCCCC----Ccee
Confidence            552     466666  3221  12222 223345677886    89998876552   34688888876531    01  


Q ss_pred             eeeccCCCCceeEEEEeecCCeEEEEEeCC----CeEEEEECCC
Q 010784          251 KATLYGHEKPIKLMSVAGHKSFLLVTISKD----SKVRVWDTST  290 (501)
Q Consensus       251 ~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d----g~v~vwd~~~  290 (501)
                      .............+.|+. ++.+++....+    ..|..+|+.+
T Consensus       312 ~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          312 EIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             EEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            122233344555555542 45455554443    3677777764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.86  E-value=0.028  Score=55.81  Aligned_cols=324  Identities=9%  Similarity=0.018  Sum_probs=175.5

Q ss_pred             CCceEEeeC-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          112 PHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       112 ~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      .+..|++++ ++.++.+....+.|..+++... .....+..-......|++.+.            .+++.++-...+.|
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~-~~~~v~~~g~~~P~GlAvD~~------------~~~LY~tD~~~~~I  104 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGS-ALEHVVEFGLDYPEGMAVDWL------------GKNLYWADTGTNRI  104 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEEEEETT------------TTEEEEEETTTTEE
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCC-CcEEEEeCCCCCcceEEEEeC------------CCEEEEEECCCCEE
Confidence            466888986 4565666666788888887642 222333322345667888752            35666766667888


Q ss_pred             EEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEee--CCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784          191 RLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGG--EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       191 ~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                      .+.+ .+.....+. ..-..-..|++.    |....|+...  ..+.|...+++....       ..+...-.....|++
T Consensus       105 ~v~~~dG~~~~~l~~~~l~~P~~iavd----p~~G~lY~tD~g~~~~I~r~~~dG~~~-------~~l~~~~~~P~Glal  173 (628)
T 4a0p_A          105 EVSKLDGQHRQVLVWKDLDSPRALALD----PAEGFMYWTEWGGKPKIDRAAMDGSER-------TTLVPNVGRANGLTI  173 (628)
T ss_dssp             EEEETTSTTCEEEECSSCCCEEEEEEE----TTTTEEEEEECSSSCEEEEEETTSCSC-------EEEECSCSSEEEEEE
T ss_pred             EEEecCCCcEEEEEeCCCCCcccEEEc----cCCCeEEEeCCCCCCEEEEEeCCCCce-------EEEECCCCCcceEEE
Confidence            8888 554433332 333456788885    5444555444  256777777765442       222223445678999


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEeeeccC
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMTPAIC  344 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~  344 (501)
                      .+..+.+.++-...+.|...|+..... ...     ......+..+...++.++++..  +.|...|..+++....+...
T Consensus       174 D~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~-----~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~  247 (628)
T 4a0p_A          174 DYAKRRLYWTDLDTNLIESSNMLGLNR-EVI-----ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGH  247 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC-EEE-----EECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECS
T ss_pred             ccccCEEEEEECCCCEEEEEcCCCCce-EEe-----eccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEecC
Confidence            975666667667788999999976433 111     1223456677777777777764  46777776555432222111


Q ss_pred             CCcEEE------------------------EEE----------cC-------CC-------cEEEEEcCCcEEEEecCCC
Q 010784          345 KPILHS------------------------FSI----------MP-------SK-------SLICTGGIGKAMTWDIRRS  376 (501)
Q Consensus       345 ~~~v~~------------------------v~~----------~~-------~~-------~~l~~~~~d~i~iwd~~~~  376 (501)
                      ......                        +++          .|       ++       .+++.+....|+-..+...
T Consensus       248 ~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~  327 (628)
T 4a0p_A          248 LDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQ  327 (628)
T ss_dssp             CCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTT
T ss_pred             CCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccc
Confidence            000000                        111          11       11       1222222222433333321


Q ss_pred             CCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCC-CCCCCcceeeeEeeccccEE
Q 010784          377 QDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNY-PEEADISTGCSAMAVSGCRI  453 (501)
Q Consensus       377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l  453 (501)
                      ...   .....+.+ -..+..|+|++.  .++.+-...+.|+.++.........+.... ..........+++...++.|
T Consensus       328 ~~~---~~~l~~~~-~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nL  403 (628)
T 4a0p_A          328 QSP---DIILPIHS-LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYI  403 (628)
T ss_dssp             CCC---CEECCCTT-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEE
T ss_pred             cCc---eEEEEehh-cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeE
Confidence            100   00011111 245778999886  677766677889988875433222221100 00113457789998887766


Q ss_pred             EEeecCCCceEEEeecc
Q 010784          454 VTASYGEPGLLQFRDFS  470 (501)
Q Consensus       454 ~s~~~d~~g~i~~w~~~  470 (501)
                      ..+.. ..+.|.+.++.
T Consensus       404 Y~td~-~~~~I~v~~~~  419 (628)
T 4a0p_A          404 YWTCE-ATNVINVTRLD  419 (628)
T ss_dssp             EEEET-TTTEEEEEETT
T ss_pred             EEEcC-CCCEEEEEECC
Confidence            55443 45677776654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.81  E-value=0.0032  Score=64.36  Aligned_cols=159  Identities=12%  Similarity=0.050  Sum_probs=86.9

Q ss_pred             ceEEEEeeecCCCCCCEEEEee-CC----CcEEEEeccCC-CccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-
Q 010784          208 PVSTLSDKLLGDGSGKILASGG-ED----ATVRLWSLSSS-GKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-  280 (501)
Q Consensus       208 ~v~~l~~s~~~~~~~~~l~sg~-~d----g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-  280 (501)
                      .+...+|||   |+|++|+-+. .+    ..|+++|+.++ +.     ....+..   ....+.|+| +++.|+....| 
T Consensus       175 ~~~~~~~S~---PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-----l~~~~~~---~~~~~~Wsp-Dg~~l~y~~~d~  242 (751)
T 2xe4_A          175 DVMEVKPAP---PEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-----IADKVSG---TNGEIVWGP-DHTSLFYVTKDE  242 (751)
T ss_dssp             EEEEEEECT---TTTCEEEEEEESSSSSCEEEEEEETTCTTCC-----CCCCEEE---ECSCCEECS-STTEEEEEEECT
T ss_pred             EEeeeEecC---CCCCEEEEEEeCCCCceEEEEEEECCCCCEe-----CCccccC---ceeeEEEec-CCCEEEEEEECC
Confidence            566777741   6888777443 23    35999999987 52     1111111   134578998 55555555544 


Q ss_pred             ----CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec-cCCCcEEEEEEcC
Q 010784          281 ----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-ICKPILHSFSIMP  355 (501)
Q Consensus       281 ----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~v~~~~  355 (501)
                          ..|.++++.+++..                                          ....+. .......++.|+|
T Consensus       243 ~~~~~~v~~~~lgt~~~~------------------------------------------~~lv~~~~~~~~~~~~~~Sp  280 (751)
T 2xe4_A          243 TLRENKVWRHVMGKLQSE------------------------------------------DVCLYEEHNPLFSAFMYKAA  280 (751)
T ss_dssp             TCCEEEEEEEETTSCGGG------------------------------------------CEEEEECCCTTCEEEEEECT
T ss_pred             CCCCCEEEEEECCCCchh------------------------------------------cEEEEecCCCceEEEEEECC
Confidence                24556666544210                                          001111 1223456789999


Q ss_pred             CCcEEEEEc---CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC----CcEEEEeCCC
Q 010784          356 SKSLICTGG---IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD----LRINIWETDT  422 (501)
Q Consensus       356 ~~~~l~~~~---~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d----g~i~iwd~~~  422 (501)
                      ||++|+..+   ... |+++|+.++...  ...........+...++.|+.. .+++....+    ..|..+++.+
T Consensus       281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~--~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          281 DTNTLCIGSQSPETAEVHLLDLRKGNAH--NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TSSEEEEEEECSSCEEEEEEESSSCTTC--CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCEEEEEecCCCCceEEEEECCCCCCC--ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            999887655   334 899999875211  0001122233455677776656 665554443    3567777765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.79  E-value=0.019  Score=51.73  Aligned_cols=220  Identities=8%  Similarity=-0.057  Sum_probs=128.1

Q ss_pred             CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc-
Q 010784          231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP-  309 (501)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-  309 (501)
                      ...|+..+++.....    ....+. .......+.|.+.++.++++-...+.|..+++..........    ......+ 
T Consensus        12 ~~~I~~i~l~~~~~~----~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~----~~~l~~p~   82 (318)
T 3sov_A           12 RRDLRLVDATNGKEN----ATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV----VSGLLSPD   82 (318)
T ss_dssp             EEEEEEEETTCTTSC----CEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE----EECCSCCC
T ss_pred             cCeEEEEECCCCceE----EEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE----cCCCCCcc
Confidence            467999999875310    111111 123456888987667777777778899999987663211100    0111223 


Q ss_pred             -eeeecCCCeEEEEeC--CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-C-Cc-EEEEecCCCCCCCCCC
Q 010784          310 -VDMKCHESMLYIASG--SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-I-GK-AMTWDIRRSQDAVKPQ  383 (501)
Q Consensus       310 -~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~-d~-i~iwd~~~~~~~~~~~  383 (501)
                       +.+.+....++++..  +.|.++++..................+++.|.+..|+.+. . .. |...++.....     
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----  157 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-----  157 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-----
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-----
Confidence             334444566666654  3788888865443333333445678999998644444443 2 34 88888764321     


Q ss_pred             Ccccc-cCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC
Q 010784          384 PMAEL-DGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE  460 (501)
Q Consensus       384 ~~~~~-~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~  460 (501)
                        ..+ ...-...+.|+++++  +++.+-+..+.|..+|+.. .....+..    .......++++.. +..+++-.  .
T Consensus       158 --~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~----~~~~~P~glav~~-~~lywtd~--~  227 (318)
T 3sov_A          158 --FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVK----GSLPHPFALTLFE-DILYWTDW--S  227 (318)
T ss_dssp             --EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEC----SCCSCEEEEEEET-TEEEEEET--T
T ss_pred             --EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEec----CCCCCceEEEEeC-CEEEEEec--C
Confidence              122 122345689999985  7777777889999999864 33333321    1123445666643 33444433  5


Q ss_pred             CceEEEeeccCCcc
Q 010784          461 PGLLQFRDFSNATC  474 (501)
Q Consensus       461 ~g~i~~w~~~~~~~  474 (501)
                      .+.|..++..++..
T Consensus       228 ~~~V~~~~~~~G~~  241 (318)
T 3sov_A          228 THSILACNKYTGEG  241 (318)
T ss_dssp             TTEEEEEETTTCCS
T ss_pred             CCeEEEEECCCCCc
Confidence            68888888765553

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.76  E-value=0.0087  Score=56.52  Aligned_cols=152  Identities=7%  Similarity=0.051  Sum_probs=89.7

Q ss_pred             CCceEEeeC--CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CC
Q 010784          112 PHDHILLDN--NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DH  188 (501)
Q Consensus       112 ~i~~~~~~~--~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg  188 (501)
                      .+..|+++|  ++.++++-.. +.|..+|..++ . +..+.........|+|++             +++.|+.+.. ++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~-~-v~~~~~~~~~P~~ia~d~-------------~G~~lyvad~~~~  201 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKE-Y-VSTVYSGLSKVRTICWTH-------------EADSMIITNDQNN  201 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTT-E-EEEEECCCSCEEEEEECT-------------TSSEEEEEECCSC
T ss_pred             CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCC-E-EEEEecCCCCcceEEEeC-------------CCCEEEEEeCCCC
Confidence            378999997  3444444333 88888998753 3 333333455688999998             7785554443 22


Q ss_pred             ----ceEEec-CCcee--eeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784          189 ----SIRLWW-KGSCQ--RCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP  260 (501)
Q Consensus       189 ----~i~vwd-~~~~~--~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  260 (501)
                          .+.+.+ .+...  ..+.. ......+++.    + ++.++++-..++.|..++...+..    ..+.... ....
T Consensus       202 ~~~~~v~~~~~~g~~~~~~~l~~-~~~p~giavd----p~~g~lyv~d~~~~~V~~~~~~~~~~----~~~~~~~-~~~~  271 (430)
T 3tc9_A          202 NDRPNNYILTRESGFKVITELTK-GQNCNGAETH----PINGELYFNSWNAGQVFRYDFTTQET----TPLFTIQ-DSGW  271 (430)
T ss_dssp             TTSEEEEEEEGGGTSCSEEEEEE-CSSCCCEEEC----TTTCCEEEEETTTTEEEEEETTTTEE----EEEEECS-SSSC
T ss_pred             cccceEEEEeCCCceeeeeeecc-CCCceEEEEe----CCCCEEEEEECCCCEEEEEECCCCcE----EEEEEcC-CCCc
Confidence                233333 22221  22221 2234566774    6 677666666778999999876531    0111111 1234


Q ss_pred             eeEEEEeecCCe-EEEEEeCCCeEEEEECCC
Q 010784          261 IKLMSVAGHKSF-LLVTISKDSKVRVWDTST  290 (501)
Q Consensus       261 v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~~  290 (501)
                      -..++++| +++ ++++-...+.|..++...
T Consensus       272 P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          272 EFHIQFHP-SGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             CEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred             ceeEEEcC-CCCEEEEEECCCCEEEEEeCCc
Confidence            57899998 555 666666788999987653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.73  E-value=0.016  Score=55.17  Aligned_cols=252  Identities=8%  Similarity=-0.007  Sum_probs=130.0

Q ss_pred             CcEEEEeeCCCceEEec-CCceeeeccC----CCCceEEEEe-------eecCCCCCCEEEEeeCCC-------cEEEEe
Q 010784          178 ENVLVTSSCDHSIRLWW-KGSCQRCFKG----HNGPVSTLSD-------KLLGDGSGKILASGGEDA-------TVRLWS  238 (501)
Q Consensus       178 ~~~l~s~~~dg~i~vwd-~~~~~~~~~~----h~~~v~~l~~-------s~~~~~~~~~l~sg~~dg-------~i~iwd  238 (501)
                      ++++++....+.|++.| ....+..+..    .......++|       .    ++++.|+.+...+       .|.+.+
T Consensus       152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d----~~G~~lyvad~~~~~~~~~~~V~~i~  227 (496)
T 3kya_A          152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA----DEAEYMIVAIDYDGKGDESPSVYIIK  227 (496)
T ss_dssp             EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB----CTTCEEEEEECCCTTGGGEEEEEEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC----CCCCEEEEEeCCCCCcccCceEEEEe
Confidence            45555555456788888 4445544432    1234788888       7    7788666665543       255665


Q ss_pred             ccCCCcccc---ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECC-------CCccccceecccceecCCC
Q 010784          239 LSSSGKRGQ---QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS-------TSSAVRSSCCVGMTSVPGV  308 (501)
Q Consensus       239 ~~~~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~-------~~~~~~~~~~~~~~~~~~~  308 (501)
                      .........   ...+..+.    ....++++|.++.++++-..++.|..+|+.       ++..-......    ..+ 
T Consensus       228 r~~~G~~~~~~~~~~v~~~~----~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~----~~g-  298 (496)
T 3kya_A          228 RNADGTFDDRSDIQLIAAYK----QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN----NPN-  298 (496)
T ss_dssp             CCTTSCCSTTSCEEEEEEES----CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG----CTT-
T ss_pred             cCCCCceeecccceeeccCC----CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc----ccc-
Confidence            333111000   01122221    234567887667777777788889999987       44210000000    000 


Q ss_pred             ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcc
Q 010784          309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMA  386 (501)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~  386 (501)
                      .                         .+.+... ........++|+|+|++|+.+. ... |+.++.......  .....
T Consensus       299 ~-------------------------~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~--~~~~~  350 (496)
T 3kya_A          299 T-------------------------FKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE--FITPY  350 (496)
T ss_dssp             T-------------------------EEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE--ECCCE
T ss_pred             c-------------------------cceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce--ecccE
Confidence            0                         0001111 1123457899999998555444 444 888665321100  00000


Q ss_pred             ccc------Cc---------ccCeE-EEEec-------CC-eEEEEecCCCcEEEEeCCCcccccccccCCC--------
Q 010784          387 ELD------GH---------VGSVT-QLHMD-------PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP--------  434 (501)
Q Consensus       387 ~~~------~h---------~~~v~-~l~~~-------~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~--------  434 (501)
                      .+.      ++         -.... .++..       +. .++++-+..++|+.++ .+|. +.++.+...        
T Consensus       351 ~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~  428 (496)
T 3kya_A          351 NFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGN  428 (496)
T ss_dssp             EEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSC
T ss_pred             EecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCcc
Confidence            111      11         11234 45554       45 7777777889999998 4553 334422100        


Q ss_pred             -----CC------CCcceeeeEeecc-ccEEEEeecCCCceEEEeeccCCcc
Q 010784          435 -----EE------ADISTGCSAMAVS-GCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       435 -----~~------~~~~v~~~~~s~~-g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                           .+      .-.....++++++ |.+.++=.  ...+|+.+++.....
T Consensus       429 ~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~--~N~rIrki~~~~~~~  478 (496)
T 3kya_A          429 QWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQ--VGHTIRTISMEQEEN  478 (496)
T ss_dssp             SCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEET--TTTEEEEEEECCCC-
T ss_pred             ccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeC--CCCEEEEEECCCCcc
Confidence                 00      1233567899987 65555544  568888888776554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.69  E-value=0.021  Score=49.19  Aligned_cols=207  Identities=10%  Similarity=0.070  Sum_probs=117.2

Q ss_pred             ecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEE
Q 010784          148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKIL  225 (501)
Q Consensus       148 ~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l  225 (501)
                      .+.+-.+.+..++|.|+            .+.++++...++.|...| .++.++.+. .-....-.+++.    +++.++
T Consensus        21 ~l~g~~~~lSGla~~~~------------~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~----~~g~~~   84 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQ------------SNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYI----GDNQFV   84 (255)
T ss_dssp             ECTTCCSCEEEEEEETT------------TTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEEC----STTEEE
T ss_pred             ECCCcccCcceeEEeCC------------CCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEe----CCCEEE
Confidence            44555567999999983            345666677788888888 766666653 222466778874    677776


Q ss_pred             EEeeCCCcEEEEeccCCCcccccccee-ec--cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC---Cccccceec
Q 010784          226 ASGGEDATVRLWSLSSSGKRGQQALKA-TL--YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST---SSAVRSSCC  299 (501)
Q Consensus       226 ~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~--~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~---~~~~~~~~~  299 (501)
                      ++.-.++.+.++++............. .+  ...+.....|++.|..+ .|+++.......+|.+..   .........
T Consensus        85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g~~~~~~l~i~~~  163 (255)
T 3qqz_A           85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNGLLSSNELHISKD  163 (255)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred             EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcccccCCceeeecc
Confidence            765567889999887654200000111 11  12455678999998544 455555544445555431   100000000


Q ss_pred             ---ccc-eecCCCceeeecCCCeEEEEeCC--cEEEEEcCCCceEeeeccCC---------CcEEEEEEcCCCcEEEEEc
Q 010784          300 ---VGM-TSVPGVPVDMKCHESMLYIASGS--SVVTIDLRTMQKVMTPAICK---------PILHSFSIMPSKSLICTGG  364 (501)
Q Consensus       300 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~l~~~~  364 (501)
                         ... ....-....+....+.+++.+..  .+..+|... +.+..+.-..         .....|+|.++|+++++ +
T Consensus       164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s  241 (255)
T 3qqz_A          164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S  241 (255)
T ss_dssp             HHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred             hhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence               000 01112223333444556666654  677788654 4444333221         36789999999986666 5


Q ss_pred             CCc-EEEEec
Q 010784          365 IGK-AMTWDI  373 (501)
Q Consensus       365 ~d~-i~iwd~  373 (501)
                      +.+ ++.+.-
T Consensus       242 E~n~~y~f~~  251 (255)
T 3qqz_A          242 EPNRFYRFTP  251 (255)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCceEEEEEe
Confidence            555 776654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.69  E-value=0.0089  Score=53.61  Aligned_cols=209  Identities=8%  Similarity=0.151  Sum_probs=124.5

Q ss_pred             CcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCC---EEEEeeC---CCcEEEEeccCCCccccc
Q 010784          176 RTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGK---ILASGGE---DATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       176 ~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~---~l~sg~~---dg~i~iwd~~~~~~~~~~  248 (501)
                      |...+++.....+-+.+|| .++.++.+..  +.++.+...|...-.|+   ++++...   +++|++|+++....    
T Consensus        38 p~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~----  111 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG----  111 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC----
T ss_pred             CCccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC----
Confidence            3556677777788999999 8888888764  56676665421111222   2333333   57899998853221    


Q ss_pred             cceeeccC------CC-CceeEEEE--eecCC-eEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784          249 ALKATLYG------HE-KPIKLMSV--AGHKS-FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM  318 (501)
Q Consensus       249 ~~~~~~~~------~~-~~v~~l~~--~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (501)
                       .+..+..      .. ..+..+++  ++..+ .++++...+|.+..|++.....-.                       
T Consensus       112 -~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-----------------------  167 (355)
T 3amr_A          112 -TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-----------------------  167 (355)
T ss_dssp             -CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-----------------------
T ss_pred             -ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-----------------------
Confidence             1222211      11 45666777  55334 367888888999999884321000                       


Q ss_pred             EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc-Cc-ccCe
Q 010784          319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD-GH-VGSV  395 (501)
Q Consensus       319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~-~h-~~~v  395 (501)
                                    .+.+.++++.. .+.+..+...+....|+.+-++. |..++....... +.+.+..+. ++ ...+
T Consensus       168 --------------~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~-~~~~v~~~~~g~l~aDv  231 (355)
T 3amr_A          168 --------------ISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGS-NGTVIDRADGRHLTRDI  231 (355)
T ss_dssp             --------------EEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCS-CCEEEEEBSSSSBCSCE
T ss_pred             --------------ccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCC-CceEEEEecCCccccCc
Confidence                          01133344443 45688889998888888888877 777775532210 012223321 22 2357


Q ss_pred             EEEEe--cCC---eEEEEecCCCcEEEEeCC-Ccccccccc
Q 010784          396 TQLHM--DPY---KIVTGGRDDLRINIWETD-TGMLANSLL  430 (501)
Q Consensus       396 ~~l~~--~~~---~~l~~gs~dg~i~iwd~~-~~~~~~~~~  430 (501)
                      ..|++  .++   .+++++-.+.+..+||.. +.+.+..|.
T Consensus       232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          232 EGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             ceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            77777  343   466666578899999996 667777774

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.68  E-value=0.023  Score=53.63  Aligned_cols=234  Identities=10%  Similarity=0.036  Sum_probs=125.2

Q ss_pred             CceEEeeCC---cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC--
Q 010784          113 HDHILLDNN---DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD--  187 (501)
Q Consensus       113 i~~~~~~~~---~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--  187 (501)
                      +..|+++++   +.++++-.. +.|+.++..++ ... .+.........+++++             +|+++++....  
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g-~v~-~~~~~~~~P~giavd~-------------dG~lyVad~~~~~  204 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQ-YVD-IKTTNIGQCADVNFTL-------------NGDMVVVDDQSSD  204 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBT-SCEEEEETTTT-EEE-EECCCCSCEEEEEECT-------------TCCEEEEECCSCT
T ss_pred             CceEEEccccCCCEEEEEeCC-CCEEEEECCCC-EEE-EeecCCCCccEEEECC-------------CCCEEEEcCCCCc
Confidence            789999984   666555444 88999998653 333 3334455688999998             77855554321  


Q ss_pred             -Cc-eEEec-CCcee--eeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEeccCCCccccccceeecc-CCCCc
Q 010784          188 -HS-IRLWW-KGSCQ--RCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHEKP  260 (501)
Q Consensus       188 -g~-i~vwd-~~~~~--~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~  260 (501)
                       .. +...+ .+...  ..+. .......+++.    + ++.++++-..++.|+.+|..++..     ....+. +....
T Consensus       205 ~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd----~~~G~lyv~d~~~~~V~~~d~~~g~~-----~~~~~~~~~~~~  274 (433)
T 4hw6_A          205 TNTGIYLFTRASGFTERLSLC-NARGAKTCAVH----PQNGKIYYTRYHHAMISSYDPATGTL-----TEEEVMMDTKGS  274 (433)
T ss_dssp             TSEEEEEECGGGTTCCEEEEE-ECSSBCCCEEC----TTTCCEEECBTTCSEEEEECTTTCCE-----EEEEEECSCCSS
T ss_pred             ccceEEEEECCCCeecccccc-ccCCCCEEEEe----CCCCeEEEEECCCCEEEEEECCCCeE-----EEEEeccCCCCC
Confidence             11 22233 11111  1111 12233456664    5 666666666778899998875541     011111 11222


Q ss_pred             eeEEEEeecCCeEEEEEeCCCeEEEEECCC--Cccccceecccc---e---------ecCCCceeeec---------CCC
Q 010784          261 IKLMSVAGHKSFLLVTISKDSKVRVWDTST--SSAVRSSCCVGM---T---------SVPGVPVDMKC---------HES  317 (501)
Q Consensus       261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~--~~~~~~~~~~~~---~---------~~~~~~~~~~~---------~~~  317 (501)
                      -..++++|.+..++++-...+.|+.++...  +...........   .         ..-..+..+.+         ...
T Consensus       275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~  354 (433)
T 4hw6_A          275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE  354 (433)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC
T ss_pred             cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC
Confidence            346899984333666666778999988653  221100000000   0         01122444555         444


Q ss_pred             -eEEEEeC--CcEEEEEcCCCceEeeeccC------------------CCcEEEEEEc-CCCcEEEEEcCCc-EEEEecC
Q 010784          318 -MLYIASG--SSVVTIDLRTMQKVMTPAIC------------------KPILHSFSIM-PSKSLICTGGIGK-AMTWDIR  374 (501)
Q Consensus       318 -~~~~~~~--~~i~~~d~~~~~~~~~~~~~------------------~~~v~~v~~~-~~~~~l~~~~~d~-i~iwd~~  374 (501)
                       .++++..  +.|+.++. ++. +.++.+.                  -.....|+++ +++.++++-..+. |+.+++.
T Consensus       355 g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          355 YDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence             3455543  36777774 443 3222221                  1236789999 5676666666555 8887764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.65  E-value=0.00099  Score=67.24  Aligned_cols=208  Identities=10%  Similarity=-0.026  Sum_probs=117.8

Q ss_pred             CCCceEEeeCC-cEEEeecCCeeeEEEEeccc---ccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784          111 KPHDHILLDNN-DIFSTQGSSIQNIKIDNFLS---ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC  186 (501)
Q Consensus       111 ~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~---~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  186 (501)
                      ..+..|++++. +.++.+-...+.|..+++..   +......+.........|++.+.            .++++++-..
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~------------~g~LY~tD~~  473 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI------------HSNIYWTDSV  473 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS------------SSBCEECCTT
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee------------CCcEEEEecc
Confidence            44778899874 45555555667888888764   11222222222223455676642            4566676667


Q ss_pred             CCceEEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEee-CC-CcEEEEeccCCCccccccceeeccCCCCcee
Q 010784          187 DHSIRLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGG-ED-ATVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       187 dg~i~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      .+.|.+.+ .+..+..+. ........+++.    +.+.+|+.+. .. +.|.+.+++....      .......-....
T Consensus       474 ~~~I~v~d~dg~~~~~l~~~~~~~P~giavD----p~~g~ly~td~~~~~~I~~~~~dG~~~------~~l~~~~l~~Pn  543 (699)
T 1n7d_A          474 LGTVSVADTKGVKRKTLFREQGSKPRAIVVD----PVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENIQWPN  543 (699)
T ss_dssp             TSCEEEEBSSSCCEEEECCCSSCCCCCEECC----SSSSCCEECCCSSSCCEEBCCSSSCCC------CEESCSSCSSCC
T ss_pred             CCeEEEEecCCCceEEEEeCCCCCcceEEEc----cCCCcEEEcccCCCCeEEEEeCCCCCe------eEEEeCCCCCcc
Confidence            78899998 554444332 222345677774    5444444433 22 6787777764331      111112223456


Q ss_pred             EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEee
Q 010784          263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMT  340 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~  340 (501)
                      .|++++.++.++++-+..+.|.++++...... .+  .........+..+....+.++++..  +.|..++..+++.+..
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~--~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TI--LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL  620 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EE--CCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEEC
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCceE-EE--EecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEE
Confidence            78999866777777777889999998753221 11  1111122345666666677777654  3788888777776665


Q ss_pred             ecc
Q 010784          341 PAI  343 (501)
Q Consensus       341 ~~~  343 (501)
                      +..
T Consensus       621 i~~  623 (699)
T 1n7d_A          621 LAE  623 (699)
T ss_dssp             CCT
T ss_pred             eec
Confidence            543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.48  E-value=0.16  Score=54.12  Aligned_cols=271  Identities=12%  Similarity=0.046  Sum_probs=136.9

Q ss_pred             cEEEEeeCCCceEEec--CCceeee-ccCCCCceEEEEeeecCC--CCCCEEEEeeC-CCcEEEEeccCCCcccccccee
Q 010784          179 NVLVTSSCDHSIRLWW--KGSCQRC-FKGHNGPVSTLSDKLLGD--GSGKILASGGE-DATVRLWSLSSSGKRGQQALKA  252 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd--~~~~~~~-~~~h~~~v~~l~~s~~~~--~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~  252 (501)
                      .+++.++ .+.+.+++  .+..... -..-...|.|+++.+.++  ..+++++.|.. |++|+|+++...+.    ....
T Consensus       524 ~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~----~~~~  598 (1158)
T 3ei3_A          524 SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL----LHKE  598 (1158)
T ss_dssp             SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE----EEEE
T ss_pred             CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe----EEEE
Confidence            4555554 56777775  3322111 112356899999864221  13579999996 99999999986542    1111


Q ss_pred             eccCCCCceeEEEEee-cCCeEEEEEeCCCeEEEEECC--CCccccceecccceecCCCcee---eecCCCeEEEEeCC-
Q 010784          253 TLYGHEKPIKLMSVAG-HKSFLLVTISKDSKVRVWDTS--TSSAVRSSCCVGMTSVPGVPVD---MKCHESMLYIASGS-  325 (501)
Q Consensus       253 ~~~~~~~~v~~l~~~~-~~~~~l~s~s~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-  325 (501)
                      .+.. .....++.+.. .+..+|..|-.||.+.-+.+.  +++....    ........+..   +...+...+++++. 
T Consensus       599 ~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~----r~~~LG~~pv~L~~~~~~~~~~V~a~s~r  673 (1158)
T 3ei3_A          599 MLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDR----KKVTLGTQPTVLRTFRSLSTTNVFACSDR  673 (1158)
T ss_dssp             ECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEE----EEEECCSSCCEEEEEESSSCEEEEEESSS
T ss_pred             ECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccc----eeEEcCCCceEEEEEeeCCceeEEEECCC
Confidence            2221 12334444432 234678889999998666554  3333211    11111112221   22223334455544 


Q ss_pred             cEEEEEcCCCceEeeeccCCCcE-EEEEEcCC--CcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784          326 SVVTIDLRTMQKVMTPAICKPIL-HSFSIMPS--KSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP  402 (501)
Q Consensus       326 ~i~~~d~~~~~~~~~~~~~~~~v-~~v~~~~~--~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  402 (501)
                      ...++-- .++.... ...-..+ ....|+..  ..-++..+++.++|..+...+.    -.+.++.- ...+..++++|
T Consensus       674 p~liy~~-~~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~----~~~~~ipL-~~Tprri~y~~  746 (1158)
T 3ei3_A          674 PTVIYSS-NHKLVFS-NVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQK----LHIRTVPL-YESPRKICYQE  746 (1158)
T ss_dssp             CEEEEES-SSSEEEE-EBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSS----EEEEEEEC-SSEEEEEEEEG
T ss_pred             CEEEEEc-CCceEEe-ccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCC----eeEEEEeC-CCCceEEEEcC
Confidence            3333332 2332221 1111223 23345432  2345555555588888754321    12233322 35678888888


Q ss_pred             C-eEEEEec-C------------------------------------------------CCcEEEEeCCCcccccccccC
Q 010784          403 Y-KIVTGGR-D------------------------------------------------DLRINIWETDTGMLANSLLCN  432 (501)
Q Consensus       403 ~-~~l~~gs-~------------------------------------------------dg~i~iwd~~~~~~~~~~~~~  432 (501)
                      . +.++.+. .                                                -+.|++.|..+.+.+..+...
T Consensus       747 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~  826 (1158)
T 3ei3_A          747 VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFL  826 (1158)
T ss_dssp             GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECC
T ss_pred             CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCC
Confidence            6 3322211 1                                                124777887777777666432


Q ss_pred             CCCCCCcceeee---Eeecc-ccEEEEeec------C--CCceEEEeecc
Q 010784          433 YPEEADISTGCS---AMAVS-GCRIVTASY------G--EPGLLQFRDFS  470 (501)
Q Consensus       433 ~~~~~~~~v~~~---~~s~~-g~~l~s~~~------d--~~g~i~~w~~~  470 (501)
                      .    ...+.++   .|..+ ..+|++|+.      +  ..|.|.++++.
T Consensus       827 ~----nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~  872 (1158)
T 3ei3_A          827 Q----NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS  872 (1158)
T ss_dssp             T----TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred             C----CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence            2    2333333   34433 468888763      1  45899999975

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.44  E-value=0.034  Score=49.54  Aligned_cols=230  Identities=13%  Similarity=0.107  Sum_probs=112.2

Q ss_pred             CCCEEEEee-CC-----CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECC
Q 010784          221 SGKILASGG-ED-----ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTS  289 (501)
Q Consensus       221 ~~~~l~sg~-~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~  289 (501)
                      ++.+++.|+ .+     ..+.++|..+..-    ..+..+....... ++...  ++.+++.|+.+     ..+.+||+.
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~-~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~   86 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEW----SFLPSITRKRRYV-ASVSL--HDRIYVIGGYDGRSRLSSVECLDYT   86 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEE----EECCCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeE----EeCCCCChhhccc-cEEEE--CCEEEEEcCCCCCccCceEEEEECC
Confidence            455666666 33     3678888876542    1122122111111 22222  56788888765     468899998


Q ss_pred             CCc---cccceecccceecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCceEe--eeccCCCcEEEEEEcCCC
Q 010784          290 TSS---AVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQKVM--TPAICKPILHSFSIMPSK  357 (501)
Q Consensus       290 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~--~~~~~~~~v~~v~~~~~~  357 (501)
                      +.+   ....    ...........+...++.+++..|       ..+.+||+.+.+-..  .+......-..+.+  ++
T Consensus        87 ~~~~~~W~~~----~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~  160 (301)
T 2vpj_A           87 ADEDGVWYSV----APMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG  160 (301)
T ss_dssp             CCTTCCCEEE----CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT
T ss_pred             CCCCCeeEEC----CCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC
Confidence            876   3211    111111111222223455555543       268889987765432  22211111122222  67


Q ss_pred             cEEEEEcCC-----c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCcccc
Q 010784          358 SLICTGGIG-----K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGMLA  426 (501)
Q Consensus       358 ~~l~~~~~d-----~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~~~  426 (501)
                      ++++.|+.+     . +.+||+.+.+-.    .+..+...... .+++...+++++.|+.+     ..+.+||+.+.+-.
T Consensus       161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~----~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          161 VIYCLGGYDGLNILNSVEKYDPHTGHWT----NVTPMATKRSG-AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEE----EECCCSSCCBS-CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCcEE----eCCCCCccccc-ceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence            777777632     3 889998775421    11112111111 12333345666666553     46899999875432


Q ss_pred             cccccCCCCCCCcceeeeEeeccccEEEEeecCCC---ceEEEeeccCCc
Q 010784          427 NSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP---GLLQFRDFSNAT  473 (501)
Q Consensus       427 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~---g~i~~w~~~~~~  473 (501)
                      ..-..   .  .......+...++++++.|+.+..   ..+.+||.....
T Consensus       236 ~~~~~---p--~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          236 TVTSM---T--TPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             EECCC---S--SCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             ECCCC---C--CcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            22110   1  111111222337788888875432   356677766544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.42  E-value=0.074  Score=48.92  Aligned_cols=222  Identities=11%  Similarity=0.116  Sum_probs=142.0

Q ss_pred             CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc
Q 010784          230 EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP  309 (501)
Q Consensus       230 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  309 (501)
                      .+..|.|-|+..+..     .....-.-.    +.-.+| ..+.++.-. ...+.++|+++.+.+...      .....+
T Consensus        46 ~~~~vvIiDl~~~~~-----~~rrpi~Ad----sAIMnP-~~~iiALra-g~~lQiFnle~K~klks~------~~~e~V  108 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSN-----PIRRPISAD----SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAH------TMTDDV  108 (494)
T ss_dssp             TCCEEEEEETTSTTS-----CEEEECCCS----EEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEE------ECSSCC
T ss_pred             CCCeEEEEECCCCCc-----ceecccccc----eeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcce------ecCCCc
Confidence            344789999988664     222221112    234566 445565554 688999999998654432      222233


Q ss_pred             eeee-cCCCeEEEEeCCcEEEEEcCC-CceEeeeccC----CCcEEEEEEcCCCcEEEEEc----C---Cc-EEEEecCC
Q 010784          310 VDMK-CHESMLYIASGSSVVTIDLRT-MQKVMTPAIC----KPILHSFSIMPSKSLICTGG----I---GK-AMTWDIRR  375 (501)
Q Consensus       310 ~~~~-~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~----~---d~-i~iwd~~~  375 (501)
                      .-.. .+++.+.++++..|+-|++.. ..+.+.+..|    ...|.....+++.++++..+    +   .| +.+|....
T Consensus       109 vfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er  188 (494)
T 1bpo_A          109 TFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (494)
T ss_dssp             CEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred             eEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence            3333 467778888999999999974 3455555554    46788888999998877554    2   24 88898886


Q ss_pred             CCCCCCCCCcccccCcccCeEEEEecCC----eEEEEecCC---CcEEEEeCCCc-cccccc-----cc-CCCCCCCcce
Q 010784          376 SQDAVKPQPMAELDGHVGSVTQLHMDPY----KIVTGGRDD---LRINIWETDTG-MLANSL-----LC-NYPEEADIST  441 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~~gs~d---g~i~iwd~~~~-~~~~~~-----~~-~~~~~~~~~v  441 (501)
                      ..       .+.+++|......+....+    .+++-+...   ++++|-++... ..-..+     .. ..+.....--
T Consensus       189 ~~-------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP  261 (494)
T 1bpo_A          189 KV-------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP  261 (494)
T ss_dssp             CC-------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred             cc-------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence            54       3778899887777766543    555554332   78999998643 111111     00 1112223344


Q ss_pred             eeeEeeccccEEEEeecCCCceEEEeeccCCcccee
Q 010784          442 GCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL  477 (501)
Q Consensus       442 ~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~  477 (501)
                      .++..|+....+..-+  .-|.|+++|+.++...+.
T Consensus       262 vamqvs~kygviyviT--K~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          262 VAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             EEEEEETTTTEEEEEE--TTSEEEEEETTTCCEEEE
T ss_pred             eEEEecccCCEEEEEe--cCceEEEEecccceeeee
Confidence            5678888888888777  569999999998886544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.34  E-value=0.066  Score=48.04  Aligned_cols=201  Identities=7%  Similarity=0.074  Sum_probs=111.9

Q ss_pred             CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec---CCe---EEEEEe-C--CCeEEEEECC
Q 010784          219 DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH---KSF---LLVTIS-K--DSKVRVWDTS  289 (501)
Q Consensus       219 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~---~l~s~s-~--dg~v~vwd~~  289 (501)
                      ++...+++.....+-+.+||+ .++      .++.+..  +.+..+.+-|.   ++.   ++++.. .  +++|.+|++.
T Consensus        37 dp~~s~ii~t~k~~gL~Vydl-~G~------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           37 TPQNSKLITTNKKSGLVVYSL-DGK------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             CGGGCEEEEEETTTEEEEEET-TSC------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred             CCCccEEEEEcCCCCEEEEcC-CCc------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence            345566777778889999999 555      3555543  55666666652   111   223333 3  5789999774


Q ss_pred             --CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEE--cCC-Cc-EEEEE
Q 010784          290 --TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSI--MPS-KS-LICTG  363 (501)
Q Consensus       290 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~--~~~-~~-~l~~~  363 (501)
                        +++ +....        ...                          ..   +......++.+++  +|. +. ++++.
T Consensus       108 p~~~~-l~~i~--------~~~--------------------------~p---v~t~~~~pyGlcly~~~~~g~~yafV~  149 (355)
T 3amr_A          108 GKNGT-LQSMT--------DPD--------------------------HP---IATAINEVYGFTLYHSQKTGKYYAMVT  149 (355)
T ss_dssp             TTTCC-EEECS--------CTT--------------------------SC---EECCCSSCCCEEEEECTTTCCEEEEEE
T ss_pred             CCCCc-eeecc--------ccc--------------------------cC---cCCCCCCeeEEEEEecCCCCcEEEEEE
Confidence              321 11000        000                          00   0000134455666  664 43 55566


Q ss_pred             cCCc-EEEEecCC---CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC-----CcccccccccCC
Q 010784          364 GIGK-AMTWDIRR---SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD-----TGMLANSLLCNY  433 (501)
Q Consensus       364 ~~d~-i~iwd~~~---~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~-----~~~~~~~~~~~~  433 (501)
                      ..++ +..|++..   ++..  .+.+.++.. .+.+..+..++. ..|..+-.+.-|..++.+     +++.+..+..  
T Consensus       150 ~k~G~~~q~~l~~~~~g~~~--~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~--  224 (355)
T 3amr_A          150 GKEGEFEQYELKADKNGYIS--GKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG--  224 (355)
T ss_dssp             CSSSEEEEEEEEECTTSCEE--EEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS--
T ss_pred             CCCCeEEEEEEEeCCCCccc--ceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC--
Confidence            6556 88888843   2111  344566654 456888889887 444444577666666644     2344444421  


Q ss_pred             CCCCCcceeeeEe--ecccc-EEEEeecCCCceEEEeeccCCc
Q 010784          434 PEEADISTGCSAM--AVSGC-RIVTASYGEPGLLQFRDFSNAT  473 (501)
Q Consensus       434 ~~~~~~~v~~~~~--s~~g~-~l~s~~~d~~g~i~~w~~~~~~  473 (501)
                       ..-...+..|++  .++|+ +|++++. .+..+.+|+.....
T Consensus       225 -g~l~aDvEGLai~~~~~g~gyLivSsQ-G~~s~~Vydr~~~~  265 (355)
T 3amr_A          225 -RHLTRDIEGLTIYYAADGKGYLMASSQ-GNSSYAIYDRQGKN  265 (355)
T ss_dssp             -SSBCSCEEEEEEEECGGGCEEEEEEEG-GGTEEEEEESSTTC
T ss_pred             -CccccCcceEEEEecCCCCEEEEEEcC-CCCEEEEEECCCCC
Confidence             112335778887  56666 7777765 56899999986433

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.21  E-value=0.092  Score=46.89  Aligned_cols=230  Identities=14%  Similarity=0.092  Sum_probs=110.1

Q ss_pred             CCCEEEEeeCC----CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC----C-----CeEEEEE
Q 010784          221 SGKILASGGED----ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK----D-----SKVRVWD  287 (501)
Q Consensus       221 ~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~----d-----g~v~vwd  287 (501)
                      ++.+++.|+.+    ..+.++|..+..-    ..+..+...... .++...  ++.+++.|+.    +     ..+.+||
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTW----LRLADLQVPRSG-LAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEE----EECCCCSSCCBS-CEEEEE--TTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeE----eECCCCCccccc-ceEEEE--CCEEEEECCCcCCCCCCeecceEEEEC
Confidence            45666666632    3578888776542    111111111111 122222  5667777765    2     3588899


Q ss_pred             CCCCccccceecccceecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCc
Q 010784          288 TSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKS  358 (501)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~  358 (501)
                      +.+.+.....    ..........+...++.+++..|       ..+.+||+.+.+-...  +......-..+.+  +++
T Consensus        97 ~~~~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  170 (308)
T 1zgk_A           97 PMTNQWSPCA----PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL  170 (308)
T ss_dssp             TTTTEEEECC----CCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred             CCCCeEeECC----CCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE
Confidence            8876542211    11111111222223455555543       2688899887654322  1111111122222  677


Q ss_pred             EEEEEcCC-----c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCccccc
Q 010784          359 LICTGGIG-----K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGMLAN  427 (501)
Q Consensus       359 ~l~~~~~d-----~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~~~~  427 (501)
                      +++.|+.+     . +.+||+.+.+-.    .+..+....... +++...+++++.|+.+     ..+.+||+.+.+-..
T Consensus       171 iyv~GG~~~~~~~~~~~~yd~~~~~W~----~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          171 LYAVGGFDGTNRLNSAECYYPERNEWR----MITAMNTIRSGA-GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTTTEEE----ECCCCSSCCBSC-EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCCcCceEEEEeCCCCeEe----eCCCCCCccccc-eEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence            77777632     3 889998765421    111111111112 2233345666666554     468999988754322


Q ss_pred             ccccCCCCCCCcceeeeEeeccccEEEEeecCC---CceEEEeeccCCc
Q 010784          428 SLLCNYPEEADISTGCSAMAVSGCRIVTASYGE---PGLLQFRDFSNAT  473 (501)
Q Consensus       428 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~---~g~i~~w~~~~~~  473 (501)
                      .-..  +. ..... + +..-++++++.|+.+.   ...+.+||.....
T Consensus       246 ~~~~--p~-~r~~~-~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          246 VAPM--KH-RRSAL-G-ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CCCC--SS-CCBSC-E-EEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCC--CC-Cccce-E-EEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            1110  01 01111 1 2223778888887542   2346677766543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.21  E-value=0.022  Score=52.24  Aligned_cols=156  Identities=8%  Similarity=-0.012  Sum_probs=94.2

Q ss_pred             eecCCCeEEEEeCCcEEEEEcCCCceEeeeccC----CCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCC----C
Q 010784          312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC----KPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKP----Q  383 (501)
Q Consensus       312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~----~  383 (501)
                      +..++..++++.++.|+.-++.....-+.+...    -..+..+..+|+|++||..+...|.|-.+..+......    .
T Consensus        28 ~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           28 SSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             EETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            344455667777778887777644333333322    22578899999999999999888999988844322000    0


Q ss_pred             Cc--ccccC------cccCeEEEEecCC----eEEEEecCCCcEEEEeCCCccccc-ccccC----CCCCCCcceeeeEe
Q 010784          384 PM--AELDG------HVGSVTQLHMDPY----KIVTGGRDDLRINIWETDTGMLAN-SLLCN----YPEEADISTGCSAM  446 (501)
Q Consensus       384 ~~--~~~~~------h~~~v~~l~~~~~----~~l~~gs~dg~i~iwd~~~~~~~~-~~~~~----~~~~~~~~v~~~~~  446 (501)
                      .+  ..+.-      ...+|..+.|+|-    ..+++-..|+.|++||+....... .+...    ........|.+++|
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence            00  11111      2467999999996    455555799999999998522111 22100    01122356788899


Q ss_pred             eccccEEEEeecCCCceEEEe
Q 010784          447 AVSGCRIVTASYGEPGLLQFR  467 (501)
Q Consensus       447 s~~g~~l~s~~~d~~g~i~~w  467 (501)
                      ..+|=.|...+..+.|-|+-.
T Consensus       188 g~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCCcEEEEEecCCCCCEEEE
Confidence            887765555332144666544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.20  E-value=0.029  Score=49.86  Aligned_cols=172  Identities=11%  Similarity=0.035  Sum_probs=102.4

Q ss_pred             CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784          256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM  335 (501)
Q Consensus       256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  335 (501)
                      .....-.+++|.+.++.++++.-..++|..||...+..... ..      +..                           
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~------~~~---------------------------   55 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI------DGA---------------------------   55 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC------TTT---------------------------
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec------CCc---------------------------
Confidence            33334456788865565555555789999999875432110 00      000                           


Q ss_pred             ceEeeecc-CCCcEEEEEE---cCCCcEEEEEcC-------------Cc-EEEEecC---CCCCCCCCCCcccccCc---
Q 010784          336 QKVMTPAI-CKPILHSFSI---MPSKSLICTGGI-------------GK-AMTWDIR---RSQDAVKPQPMAELDGH---  391 (501)
Q Consensus       336 ~~~~~~~~-~~~~v~~v~~---~~~~~~l~~~~~-------------d~-i~iwd~~---~~~~~~~~~~~~~~~~h---  391 (501)
                          ...+ ....+..+.+   .|+++++++...             +. +..||+.   +++.+    ....+...   
T Consensus        56 ----s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~----~~~dL~~~~~~  127 (334)
T 2p9w_A           56 ----SSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV----WSVNFEKVQDE  127 (334)
T ss_dssp             ----CCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS----EEEESHHHHHH
T ss_pred             ----cccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEE----EEecCcccccc
Confidence                0000 0113478888   688888775431             45 9999999   66543    11111111   


Q ss_pred             --------ccCeEEEEecCC-eEEEEecCC-CcEEEEeCCCcccccccccCC-CCCCCcceeeeEeeccccEEEEeecCC
Q 010784          392 --------VGSVTQLHMDPY-KIVTGGRDD-LRINIWETDTGMLANSLLCNY-PEEADISTGCSAMAVSGCRIVTASYGE  460 (501)
Q Consensus       392 --------~~~v~~l~~~~~-~~l~~gs~d-g~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~s~~~d~  460 (501)
                              ....+.++.+++ +..++++.- +.|...+.. |+.+..+.... ........+.++++|+|+.|++..  .
T Consensus       128 ~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~--~  204 (334)
T 2p9w_A          128 FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG--G  204 (334)
T ss_dssp             HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES--S
T ss_pred             ccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc--C
Confidence                    134789999999 888877777 777777765 33333321111 111233477999999999999887  4


Q ss_pred             CceEEEeeccCC
Q 010784          461 PGLLQFRDFSNA  472 (501)
Q Consensus       461 ~g~i~~w~~~~~  472 (501)
                      .|.|..+|+...
T Consensus       205 ~g~L~~fD~~~p  216 (334)
T 2p9w_A          205 PRALTAFDVSKP  216 (334)
T ss_dssp             SSSEEEEECSSS
T ss_pred             CCeEEEEcCCCC
Confidence            699999997743

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.14  E-value=0.12  Score=46.03  Aligned_cols=227  Identities=11%  Similarity=0.071  Sum_probs=111.7

Q ss_pred             CCEEEEeeC--CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC----CeEEEEECCCCcccc
Q 010784          222 GKILASGGE--DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD----SKVRVWDTSTSSAVR  295 (501)
Q Consensus       222 ~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d----g~v~vwd~~~~~~~~  295 (501)
                      +.+++.|+.  ...+.+||..+..-    ..+..+......- ++...  ++.+++.|+.+    ..+.+||+.+.+...
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~   84 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSW----TDIRCPFEKRRDA-ACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYS   84 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEE----EECCCCSCCCBSC-EEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCE----ecCCCCCccccee-EEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEE
Confidence            345556654  35688888877542    1122222111111 22222  66778888755    668889988875422


Q ss_pred             ceecccceecCCCceeeecCCCeEEEEeCC--------cEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcEEEEEcC
Q 010784          296 SSCCVGMTSVPGVPVDMKCHESMLYIASGS--------SVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSLICTGGI  365 (501)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~  365 (501)
                      ...    ......-..+...++.+++..|.        .+.+||..+.+-...  +......-..+.+  ++++++.|+.
T Consensus        85 ~~~----~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  158 (306)
T 3ii7_A           85 KLG----PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGS  158 (306)
T ss_dssp             EEC----CSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCE
T ss_pred             CCC----CCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCC
Confidence            111    11111112222334555555441        588899887654322  1111111122222  6777777762


Q ss_pred             ---------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCccc--ccc
Q 010784          366 ---------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGML--ANS  428 (501)
Q Consensus       366 ---------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~~--~~~  428 (501)
                               -. +.+||+.+.+-    ..+..+...... .+++...+++++.|+.+     ..+.+||+.+.+-  +..
T Consensus       159 ~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~  233 (306)
T 3ii7_A          159 LGNNVSGRVLNSCEVYDPATETW----TELCPMIEARKN-HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP  233 (306)
T ss_dssp             ESCTTTCEECCCEEEEETTTTEE----EEECCCSSCCBS-CEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCC
T ss_pred             CCCCCcccccceEEEeCCCCCeE----EECCCccchhhc-ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC
Confidence                     23 88999887542    111111111111 12333345666665443     3588999887542  222


Q ss_pred             cccCCCCCCCcceeeeEeeccccEEEEeecCCC---ceEEEeeccCCc
Q 010784          429 LLCNYPEEADISTGCSAMAVSGCRIVTASYGEP---GLLQFRDFSNAT  473 (501)
Q Consensus       429 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~---g~i~~w~~~~~~  473 (501)
                      +.    . .......+.  -++++++.|+.+..   ..+.+||.....
T Consensus       234 ~p----~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          234 MP----W-KGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             CS----C-CBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CC----C-CccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            21    1 111112222  27788888875422   457777776654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.04  E-value=0.00031  Score=69.97  Aligned_cols=36  Identities=14%  Similarity=0.298  Sum_probs=29.6

Q ss_pred             cccccccHHHHHHHHhcCC-hhhhHHHHhhChhHHHH
Q 010784           18 TAIADLNEDAVAHCALNLS-LQDISNMAMSCKLFKHV   53 (501)
Q Consensus        18 ~~~~~Lp~e~~~~i~~~L~-~~~l~~~~~vc~~~~~~   53 (501)
                      +.+..||+|++.+||+||+ .+|+.+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            6678899999999999999 99999999999999999

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.02  E-value=0.1  Score=46.38  Aligned_cols=229  Identities=12%  Similarity=0.116  Sum_probs=109.1

Q ss_pred             CCEEEEeeCC----CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECCCCc
Q 010784          222 GKILASGGED----ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTSTSS  292 (501)
Q Consensus       222 ~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~  292 (501)
                      +.+++.|+.+    ..+.++|+.+..-    ..+..+...... .++...  ++.+++.|+.+     ..+.+||..+.+
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~   88 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERW----HQVAELPSRRCR-AGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQ   88 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEE----EEECCCSSCCBS-CEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcE----eEcccCCccccc-ceEEEE--CCEEEEEeCcCCCccccceEEECCCCCc
Confidence            4456666643    3577888876532    112112211111 122222  66778887755     358889988765


Q ss_pred             cccceecccceecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcEEEEE
Q 010784          293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSLICTG  363 (501)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~  363 (501)
                      .....    ..........+...++.+++..|       ..+.+||+.+.+-...  +.........+.+  ++++++.|
T Consensus        89 W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G  162 (302)
T 2xn4_A           89 WTSVA----NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVG  162 (302)
T ss_dssp             EEEEC----CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred             eeeCC----CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEe
Confidence            42211    11111111222223445555443       2578888877654322  2111111122222  67777777


Q ss_pred             cC-------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCcccccccc
Q 010784          364 GI-------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGMLANSLL  430 (501)
Q Consensus       364 ~~-------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~~~~~~~  430 (501)
                      +.       -. +.+||+.+.+-.    .+..+...... .+++...+++++.|+.+     ..+.+||+.+.+-...-.
T Consensus       163 G~~~~~~~~~~~~~~yd~~~~~W~----~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  237 (302)
T 2xn4_A          163 GYDVASRQCLSTVECYNATTNEWT----YIAEMSTRRSG-AGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD  237 (302)
T ss_dssp             CEETTTTEECCCEEEEETTTTEEE----EECCCSSCCBS-CEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC
T ss_pred             CCCCCCCccccEEEEEeCCCCcEE----ECCCCcccccc-ccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC
Confidence            62       23 889998875321    11111111111 12333345666665553     368999998754322111


Q ss_pred             cCCCCCCCcceeeeEeeccccEEEEeecCCC---ceEEEeeccCCc
Q 010784          431 CNYPEEADISTGCSAMAVSGCRIVTASYGEP---GLLQFRDFSNAT  473 (501)
Q Consensus       431 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~---g~i~~w~~~~~~  473 (501)
                      ..  .   ......+...++++++.|+.+..   ..+.+||.....
T Consensus       238 ~~--~---~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          238 MN--M---CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CS--S---CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CC--C---ccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            00  1   11111122337788888875421   347777776544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.02  E-value=0.37  Score=49.21  Aligned_cols=307  Identities=10%  Similarity=-0.027  Sum_probs=153.7

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS  189 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  189 (501)
                      ..|++|.-+.+|.+.+. ..+|. ..||-.. .+..... ......|.++....             ++ .|..|..+| 
T Consensus        22 n~V~~I~qD~~G~lWig-T~~GL-~ryDG~~-~~~~~~~~~~~~~~i~~i~~d~-------------~g-~lWigT~~G-   83 (758)
T 3ott_A           22 SVVSCFLQDSEGLIWIG-SNKGL-FSYDGYS-TQQHFTYGENNNTRIYCGVIID-------------NT-YLYMGTDNG-   83 (758)
T ss_dssp             CCEEEEEECTTSCEEEE-ESSCE-EEECSSC-EEECSCTTSTTSSCEEEEEEET-------------TT-EEEEEETTE-
T ss_pred             ceEEEEEECCCCCEEEE-ECCCc-cccCCCc-eEEEEccCCCCCceEEEEEEcC-------------CC-cEEEEeCCC-
Confidence            34899999988855542 24554 4455321 1111100 11234688877655             44 556666666 


Q ss_pred             eEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec-----cCCCCcee
Q 010784          190 IRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL-----YGHEKPIK  262 (501)
Q Consensus       190 i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~v~  262 (501)
                      +..||  +.............|.++..     .++ .|..|+.+ -+..+|..++..       ..+     ......|.
T Consensus        84 l~~yd~~~~~f~~~~~~~~~~i~~i~~-----~~g-~lWigt~~-Gl~~~~~~~~~~-------~~~~~~~~~l~~~~i~  149 (758)
T 3ott_A           84 ILVYNYRADRYEQPETDFPTDVRTMAL-----QGD-TLWLGALN-GLYTYQLQSRKL-------TSFDTRRNGLPNNTIY  149 (758)
T ss_dssp             EEEEETTTTEECCCSCCCCSCEEEEEE-----ETT-EEEEEETT-EEEEEETTTCCE-------EEECHHHHCCSCSCEE
T ss_pred             eEEEeCCCCEEECcccCCCceEEEEEe-----cCC-cEEEEcCC-cceeEeCCCCeE-------EEeccCCCCcCCCeEE
Confidence            67888  32221111112335776653     244 45556655 577888766432       111     11234577


Q ss_pred             EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC--CeEEEEeCCcEEEEEcCCCceEee
Q 010784          263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE--SMLYIASGSSVVTIDLRTMQKVMT  340 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~  340 (501)
                      ++.... ++. |..|+.+ -|..++..+++................+.++..+.  ..+++++.+.+..+|..+++....
T Consensus       150 ~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~  226 (758)
T 3ott_A          150 SIIRTK-DNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQT  226 (758)
T ss_dssp             EEEECT-TCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEE
T ss_pred             EEEEcC-CCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEec
Confidence            776653 444 4445654 47788877654311100000000111234444433  446787766788888877654322


Q ss_pred             eccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCC-CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEE
Q 010784          341 PAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAV-KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIW  418 (501)
Q Consensus       341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iw  418 (501)
                      .......|.++....+|.+.+.. .+++.+++..+.+... .........-....|.++..+.+ .+.++. ..| +.++
T Consensus       227 ~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT-~~G-l~~~  303 (758)
T 3ott_A          227 EAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT-DYG-ISLS  303 (758)
T ss_dssp             EEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE-SSS-EEEE
T ss_pred             cCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe-CCc-cccc
Confidence            11123458888888888776654 5578889877643210 00000000112346899988887 666553 556 5554


Q ss_pred             eCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784          419 ETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT  455 (501)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  455 (501)
                      .....-................|.++.-..+|.+.+.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG  340 (758)
T 3ott_A          304 RYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG  340 (758)
T ss_dssp             CCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE
T ss_pred             ccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe
Confidence            3321110000000000112345777777777776554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.01  E-value=0.32  Score=48.26  Aligned_cols=307  Identities=10%  Similarity=-0.004  Sum_probs=168.7

Q ss_pred             CCceEEeeC-CcEEEeecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe-eCCC
Q 010784          112 PHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS-SCDH  188 (501)
Q Consensus       112 ~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg  188 (501)
                      .+..|+++. .+.+..+-...+.|.+.++...  ....+ ...-.....|++.|.            .|.++++- +..+
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~--~~~~l~~~~l~~P~~iavdp~------------~G~lY~tD~g~~~  146 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ--HRQVLVWKDLDSPRALALDPA------------EGFMYWTEWGGKP  146 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTST--TCEEEECSSCCCEEEEEEETT------------TTEEEEEECSSSC
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCC--cEEEEEeCCCCCcccEEEccC------------CCeEEEeCCCCCC
Confidence            478899985 4566666667788999888743  22333 233455789999883            34454543 2245


Q ss_pred             ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe-eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784          189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG-GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                      .|...+ .+.....+...-.....|++.    +++..|+.+ ...+.|...|++....       ..+.........+++
T Consensus       147 ~I~r~~~dG~~~~~l~~~~~~P~GlalD----~~~~~LY~aD~~~~~I~~~d~dG~~~-------~v~~~~l~~P~glav  215 (628)
T 4a0p_A          147 KIDRAAMDGSERTTLVPNVGRANGLTID----YAKRRLYWTDLDTNLIESSNMLGLNR-------EVIADDLPHPFGLTQ  215 (628)
T ss_dssp             EEEEEETTSCSCEEEECSCSSEEEEEEE----TTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECCSCEEEEEE
T ss_pred             EEEEEeCCCCceEEEECCCCCcceEEEc----cccCEEEEEECCCCEEEEEcCCCCce-------EEeeccCCCceEEEE
Confidence            666666 554444443344566788885    555555554 4567899999876442       222222333457777


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceec----------cccee-----------cCCCceeeecC----------
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC----------VGMTS-----------VPGVPVDMKCH----------  315 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----------~~~~~-----------~~~~~~~~~~~----------  315 (501)
                      .  .+.++++-...+.|...|..+++.......          .+...           ....-+++...          
T Consensus       216 ~--~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~  293 (628)
T 4a0p_A          216 Y--QDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPA  293 (628)
T ss_dssp             E--TTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECST
T ss_pred             E--CCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCC
Confidence            6  456666666688899888766643221110          00000           00000111100          


Q ss_pred             --------------CCeEEEEeCCcEEEEEcCCCce-Eeeecc-CCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCC
Q 010784          316 --------------ESMLYIASGSSVVTIDLRTMQK-VMTPAI-CKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQ  377 (501)
Q Consensus       316 --------------~~~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~  377 (501)
                                    ...++++....|+-..+..... ...+.. .-..+..++|.+.+..|+.+. ..+ |+.+++....
T Consensus       294 g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~  373 (628)
T 4a0p_A          294 HYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ  373 (628)
T ss_dssp             TCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC
Confidence                          1122333333444444432211 111111 124578899998655554444 444 8888776432


Q ss_pred             CCCCCCCcccccC------cccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec-
Q 010784          378 DAVKPQPMAELDG------HVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV-  448 (501)
Q Consensus       378 ~~~~~~~~~~~~~------h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-  448 (501)
                      ..      ..+..      ....+..|+++..  .++.+-+..+.|.+.++. |+....+..    .......++++.| 
T Consensus       374 ~~------~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~----~~l~~Pr~iavdp~  442 (628)
T 4a0p_A          374 GF------TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLK----GEQDRPRAVVVNPE  442 (628)
T ss_dssp             CE------EEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEE----CTTCCEEEEEEETT
T ss_pred             ce------EEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEe----CCCCceeeEEEecC
Confidence            11      11211      1346788999875  677777788999999985 555544421    1234578899999 


Q ss_pred             cccEEEEe
Q 010784          449 SGCRIVTA  456 (501)
Q Consensus       449 ~g~~l~s~  456 (501)
                      .|.++++-
T Consensus       443 ~g~ly~tD  450 (628)
T 4a0p_A          443 KGYMYFTN  450 (628)
T ss_dssp             TTEEEEEE
T ss_pred             CCeEEEee
Confidence            55555553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.96  E-value=0.19  Score=44.73  Aligned_cols=186  Identities=12%  Similarity=0.052  Sum_probs=93.1

Q ss_pred             CCCEEEEeeCC----CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEECCC
Q 010784          221 SGKILASGGED----ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDTST  290 (501)
Q Consensus       221 ~~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~~~  290 (501)
                      ++.+++.|+.+    ..+.+||..+..-    ..+..+......- ++...  ++.+++.|+.+      ..+.+||..+
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~  127 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSW----YSKLGPPTPRDSL-AACAA--EGKIYTSGGSEVGNSALYLFECYDTRT  127 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEE----EEEECCSSCCBSC-EEEEE--TTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeE----EECCCCCccccce-eEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence            56677777755    5678888877542    1222222111111 22222  66777887765      4588999888


Q ss_pred             CccccceecccceecCCCceeeecCCCeEEEEeC-----------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCC
Q 010784          291 SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-----------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSK  357 (501)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~  357 (501)
                      .+....    ...........+...++.+++..|           ..+.+||+.+.+-...  +......-..+.+  ++
T Consensus       128 ~~W~~~----~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~  201 (306)
T 3ii7_A          128 ESWHTK----PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KD  201 (306)
T ss_dssp             TEEEEE----CCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred             CceEeC----CCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CC
Confidence            754221    111111111122223445555543           2478899887654322  1111111122222  67


Q ss_pred             cEEEEEcC------CcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCcc
Q 010784          358 SLICTGGI------GKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGM  424 (501)
Q Consensus       358 ~~l~~~~~------d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~  424 (501)
                      ++++.|+.      +.+.+||+.+.+-    ..+..+.........+ ...+++++.|+.+     ..+.+||+.+.+
T Consensus       202 ~i~v~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          202 KIFAVGGQNGLGGLDNVEYYDIKLNEW----KMVSPMPWKGVTVKCA-AVGSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEEEECCEETTEEBCCEEEEETTTTEE----EECCCCSCCBSCCEEE-EETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EEEEEeCCCCCCCCceEEEeeCCCCcE----EECCCCCCCccceeEE-EECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            77777763      2288999887541    1112222111122222 3344666666543     468888887643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.90  E-value=0.19  Score=44.65  Aligned_cols=182  Identities=15%  Similarity=0.148  Sum_probs=88.9

Q ss_pred             cCcEEEEeeCCC-----ceEEec-CCceee---eccCCCCceEEEEeeecCCCCCCEEEEeeCCC-----cEEEEeccCC
Q 010784          177 TENVLVTSSCDH-----SIRLWW-KGSCQR---CFKGHNGPVSTLSDKLLGDGSGKILASGGEDA-----TVRLWSLSSS  242 (501)
Q Consensus       177 ~~~~l~s~~~dg-----~i~vwd-~~~~~~---~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg-----~i~iwd~~~~  242 (501)
                      ++.+++.|+.++     .+.+|| ....-.   .+....... +++.     -++.+++.|+.++     .+.+||+.+.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-----~~~~iyv~GG~~~~~~~~~~~~~d~~~~  134 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAV-----LNGLLYAVGGFDGSTGLSSVEAYNIKSN  134 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-----ETTEEEEEEEECSSCEEEEEEEEETTTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEE-----ECCEEEEEcCCCCCccCceEEEEeCCCC
Confidence            467888887653     466777 222111   122111112 2222     2566777777553     4677887765


Q ss_pred             CccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-------CeEEEEECCCCccccceecccceecCCCceeeecC
Q 010784          243 GKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH  315 (501)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (501)
                      .-    ..+..+...... .++...  ++.+++.|+.+       ..+.+||+.+.+.....    ..........+...
T Consensus       135 ~W----~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~r~~~~~~~~  203 (302)
T 2xn4_A          135 EW----FHVAPMNTRRSS-VGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA----EMSTRRSGAGVGVL  203 (302)
T ss_dssp             EE----EEECCCSSCCBS-CEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC----CCSSCCBSCEEEEE
T ss_pred             eE----eecCCCCCcccC-ceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC----CCccccccccEEEE
Confidence            42    122222211111 122222  56677777643       35889999877543211    11111111222233


Q ss_pred             CCeEEEEeC-------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcEEEEEcCC-----c-EEEEecCCCC
Q 010784          316 ESMLYIASG-------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSLICTGGIG-----K-AMTWDIRRSQ  377 (501)
Q Consensus       316 ~~~~~~~~~-------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~d-----~-i~iwd~~~~~  377 (501)
                      ++.+++..|       ..+.+||+.+.+-...  +.........+.+  ++++++.|+.+     . +.+||+.+.+
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            455555543       2688999887654322  1111111122222  67777777632     2 7888887653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.86  E-value=0.23  Score=44.19  Aligned_cols=164  Identities=12%  Similarity=0.072  Sum_probs=96.1

Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C-Cceee-eccC----CCC--ceEEEEeeecCCCCCCEE
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K-GSCQR-CFKG----HNG--PVSTLSDKLLGDGSGKIL  225 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~-~~~~~-~~~~----h~~--~v~~l~~s~~~~~~~~~l  225 (501)
                      --.+++|.+.            ++.++++.-..|+|..|| . +.... .+.+    ...  .+..|.|. ..++++.++
T Consensus        14 yPE~~~wd~~------------~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~-~~D~~grL~   80 (334)
T 2p9w_A           14 TPEDTIYDRT------------RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLL-THDNSKRLF   80 (334)
T ss_dssp             CCSCEEEETT------------TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEES-SSSSCCEEE
T ss_pred             CCcCccCcCC------------CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEe-ccCCCCcEE
Confidence            3456778762            355555555899999999 3 32222 2222    111  34677771 012567777


Q ss_pred             EEee-------------CCCcEEEEecc---CCCccccccceeeccC-----------CCCceeEEEEeecCCeEEEEEe
Q 010784          226 ASGG-------------EDATVRLWSLS---SSGKRGQQALKATLYG-----------HEKPIKLMSVAGHKSFLLVTIS  278 (501)
Q Consensus       226 ~sg~-------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~-----------~~~~v~~l~~~~~~~~~l~s~s  278 (501)
                      ++..             .+..|..+|+.   +++..    ....+..           -......+++.+ +++..++++
T Consensus        81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~----~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s  155 (334)
T 2p9w_A           81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV----WSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFA  155 (334)
T ss_dssp             EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS----EEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEE
T ss_pred             EEEcccccccccccccCCCCEEEEEcCCcCCCCCEE----EEecCccccccccccccccccCCceeEECC-CCCEEEeCC
Confidence            7543             15779999998   55430    1111111           113477888886 788888888


Q ss_pred             CC-CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784          279 KD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK  357 (501)
Q Consensus       279 ~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~  357 (501)
                      .. +.|...+.....                                  +..|.+...     ........+.|+++|+|
T Consensus       156 ~~~~~I~rV~pdG~~----------------------------------~~~~~~~~~-----~~~~~~G~nGIv~~pdg  196 (334)
T 2p9w_A          156 LGMPAIARVSADGKT----------------------------------VSTFAWESG-----NGGQRPGYSGITFDPHS  196 (334)
T ss_dssp             ESSCEEEEECTTSCC----------------------------------EEEEEECCC-----CSSSCCSCSEEEEETTT
T ss_pred             CCCCeEEEEeCCCCE----------------------------------EeeeeecCC-----CcccccCcceEEEeCCC
Confidence            77 777766655431                                  112222111     01112346789999999


Q ss_pred             cEEEEEcCCc-EEEEecCC
Q 010784          358 SLICTGGIGK-AMTWDIRR  375 (501)
Q Consensus       358 ~~l~~~~~d~-i~iwd~~~  375 (501)
                      ++|++...++ |..+|+..
T Consensus       197 ~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          197 NKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             TEEEEESSSSSEEEEECSS
T ss_pred             CEEEEEcCCCeEEEEcCCC
Confidence            8888776677 99999884

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.77  E-value=0.26  Score=43.65  Aligned_cols=181  Identities=14%  Similarity=0.119  Sum_probs=90.8

Q ss_pred             cCcEEEEeeCC-----CceEEec--CCc-----eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC-----cEEEEec
Q 010784          177 TENVLVTSSCD-----HSIRLWW--KGS-----CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA-----TVRLWSL  239 (501)
Q Consensus       177 ~~~~l~s~~~d-----g~i~vwd--~~~-----~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg-----~i~iwd~  239 (501)
                      ++.+++.|+.+     ..+.+||  +..     .+..+......- +++.     .++.+++.|+.++     .+.+||+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~-----~~~~lyv~GG~~~~~~~~~~~~~d~  135 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATT-----LGDMIYVSGGFDGSRRHTSMERYDP  135 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEE-----ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEE-----ECCEEEEEcccCCCcccceEEEEcC
Confidence            56788888765     3577777  222     222222111122 2222     2566777776543     5788888


Q ss_pred             cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECCCCccccceecccceecCCCceeeec
Q 010784          240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKC  314 (501)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (501)
                      .+..-    ..+..+......- ++...  ++.+++.|+.+     ..+.+||+.+.+....    ...........+..
T Consensus       136 ~~~~W----~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~----~~~p~~r~~~~~~~  204 (301)
T 2vpj_A          136 NIDQW----SMLGDMQTAREGA-GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV----TPMATKRSGAGVAL  204 (301)
T ss_dssp             TTTEE----EEEEECSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE----CCCSSCCBSCEEEE
T ss_pred             CCCeE----EECCCCCCCcccc-eEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC----CCCCcccccceEEE
Confidence            76542    2222222111111 22222  56777777754     4588999887754322    11111111122223


Q ss_pred             CCCeEEEEeC-------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcEEEEEcCC-----c-EEEEecCCC
Q 010784          315 HESMLYIASG-------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSLICTGGIG-----K-AMTWDIRRS  376 (501)
Q Consensus       315 ~~~~~~~~~~-------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~d-----~-i~iwd~~~~  376 (501)
                      .++.+++..|       ..+.+||+.+.+-...  +.........+.+  ++++++.|+.+     . +.+||+.+.
T Consensus       205 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          205 LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            3455555543       2688999987654322  1111111222222  67777777633     3 778888764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.70  E-value=0.31  Score=43.54  Aligned_cols=211  Identities=10%  Similarity=0.049  Sum_probs=98.8

Q ss_pred             EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-----C------CeEEEEECCCCc
Q 010784          224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-----D------SKVRVWDTSTSS  292 (501)
Q Consensus       224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-----d------g~v~vwd~~~~~  292 (501)
                      +++.|+  ..+.+||..++.-    .. ..+.........-... .++.+++.|+.     .      ..+..||..+.+
T Consensus         7 l~~~GG--~~~~~yd~~~~~W----~~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   78 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANEC----YC-ASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE   78 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEE----EE-EECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred             EEEEcC--CceEEECCCCCeE----ec-CCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence            455555  5688999987652    11 2222111122222222 26677777773     1      127788988765


Q ss_pred             cccceecccceecCCCceeeecCCCeEEEEeC----------CcEEEEEcCCCceEe--eeccCCCcEEEEEEcCCCcEE
Q 010784          293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASG----------SSVVTIDLRTMQKVM--TPAICKPILHSFSIMPSKSLI  360 (501)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~d~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l  360 (501)
                      .....    .......-..+....+.+++..|          ..+.+||..+.+-..  .+......-..+.  -+++++
T Consensus        79 W~~~~----~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iy  152 (315)
T 4asc_A           79 WLGMP----PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVY  152 (315)
T ss_dssp             EEECC----CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEE
T ss_pred             EEECC----CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEE
Confidence            42211    11111111122233455555544          158889988764322  1111111112222  366777


Q ss_pred             EEEcC------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCC-----cEEEEeCCCcccccc
Q 010784          361 CTGGI------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDL-----RINIWETDTGMLANS  428 (501)
Q Consensus       361 ~~~~~------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg-----~i~iwd~~~~~~~~~  428 (501)
                      +.|+.      -. +.+||..+.+-    ..+..+...... .+++...+++++.|+.++     .+.+||+.+.+-...
T Consensus       153 v~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  227 (315)
T 4asc_A          153 VIGGKGSDRKCLNKMCVYDPKKFEW----KELAPMQTARSL-FGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF  227 (315)
T ss_dssp             EECCBCTTSCBCCCEEEEETTTTEE----EECCCCSSCCBS-CEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred             EEeCCCCCCcccceEEEEeCCCCeE----EECCCCCCchhc-eEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence            77764      13 88899887531    111122111111 122333445555554443     588899877543222


Q ss_pred             cccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          429 LLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       429 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      -..   .  .......+..-++++++.|+.
T Consensus       228 ~~~---p--~~r~~~~~~~~~~~l~v~GG~  252 (315)
T 4asc_A          228 EAF---P--QERSSLSLVSLVGTLYAIGGF  252 (315)
T ss_dssp             CCC---S--SCCBSCEEEEETTEEEEEEEE
T ss_pred             CCC---C--CcccceeEEEECCEEEEECCc
Confidence            110   1  111111122336778888775

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.67  E-value=0.37  Score=43.93  Aligned_cols=60  Identities=12%  Similarity=-0.079  Sum_probs=37.5

Q ss_pred             cCeEEEEecCCeEEEEecCCCcEEEEeCCCccc------ccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          393 GSVTQLHMDPYKIVTGGRDDLRINIWETDTGML------ANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       393 ~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      .....+++....++++.-..+.|...++.....      ...+.     .....+..+++.|||.+.++..
T Consensus       268 ~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-----~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          268 FPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-----SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-----ESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheec-----ccCCCeeEEEECCCCcEEEEEe
Confidence            346677775456666666777888887764431      11221     1124678889999997776654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.52  E-value=0.25  Score=45.12  Aligned_cols=68  Identities=13%  Similarity=0.075  Sum_probs=35.2

Q ss_pred             CCCEEEEeeCC-CcEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeC-C---------CeEEEEEC
Q 010784          221 SGKILASGGED-ATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISK-D---------SKVRVWDT  288 (501)
Q Consensus       221 ~~~~l~sg~~d-g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~-d---------g~v~vwd~  288 (501)
                      ++.+++.|+.+ ..+.++|+.+...  .+..+..+. ..... .+++..  ++.+++.|+. +         ..+.+||+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~--~W~~~~~~p~~~R~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~   93 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDK--KWTALAAFPGGPRDQ-ATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNP   93 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSC--CEEECCCCTTCCCBS-CEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEET
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCC--CeeECCCCCCCcCcc-ceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeC
Confidence            45566666543 4677888764211  122222222 11111 122232  5667777765 2         45889999


Q ss_pred             CCCcc
Q 010784          289 STSSA  293 (501)
Q Consensus       289 ~~~~~  293 (501)
                      .+.+.
T Consensus        94 ~~~~W   98 (357)
T 2uvk_A           94 KTNSW   98 (357)
T ss_dssp             TTTEE
T ss_pred             CCCcE
Confidence            88754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.52  E-value=0.42  Score=42.74  Aligned_cols=106  Identities=17%  Similarity=0.159  Sum_probs=52.2

Q ss_pred             CCCEEEEeeCC-------CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC------CCeEEEEE
Q 010784          221 SGKILASGGED-------ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK------DSKVRVWD  287 (501)
Q Consensus       221 ~~~~l~sg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~------dg~v~vwd  287 (501)
                      ++.+++.|+.+       ..+.+||..+..-    ..+..+......- ++...  ++.+++.|+.      -..+.+||
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd  181 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW----SEVKNLPIKVYGH-NVISH--NGMIYCLGGKTDDKKCTNRVFIYN  181 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE----EEECCCSSCEESC-EEEEE--TTEEEEECCEESSSCBCCCEEEEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCE----eECCCCCCccccc-EEEEE--CCEEEEEcCCCCCCCccceEEEEc
Confidence            56677777754       2477788776542    1111111111111 12222  6677777764      23588999


Q ss_pred             CCCCccccceecccceecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCce
Q 010784          288 TSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQK  337 (501)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~  337 (501)
                      +.+.+.....    ..........+...++.+++..|       ..+.+||+.+.+-
T Consensus       182 ~~~~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          182 PKKGDWKDLA----PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             TTTTEEEEEC----CCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             CCCCEEEECC----CCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence            9887543211    11111111222233445555543       2577888877653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.40  E-value=0.0011  Score=65.84  Aligned_cols=33  Identities=9%  Similarity=0.295  Sum_probs=31.6

Q ss_pred             ccccHHHHHHHHhcC-ChhhhHHHHhhChhHHHH
Q 010784           21 ADLNEDAVAHCALNL-SLQDISNMAMSCKLFKHV   53 (501)
Q Consensus        21 ~~Lp~e~~~~i~~~L-~~~~l~~~~~vc~~~~~~   53 (501)
                      ..||+|++.+||+|| +.+|+.+++.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            379999999999999 899999999999999998

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.40  E-value=0.18  Score=45.81  Aligned_cols=71  Identities=14%  Similarity=0.314  Sum_probs=41.3

Q ss_pred             CcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC-C-eEEEEecCC-CcEEEEeC
Q 010784          346 PILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-Y-KIVTGGRDD-LRINIWET  420 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~-~~l~~gs~d-g~i~iwd~  420 (501)
                      ...+.++|+||++.++.+. ..+ |..|++.....+   .....+. ..+..-.+++++ + .+.+++..+ +.|..|+.
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l---~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL---TPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE---EEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE---ecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            4568999999998777665 344 999998742211   0111221 134566778887 5 666654333 33444443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.38  E-value=0.71  Score=43.88  Aligned_cols=243  Identities=10%  Similarity=0.045  Sum_probs=128.6

Q ss_pred             CceEEeeCC--cEEEeecCCeeeEEEEecccccccceeccc---CCcceeEEEe-------eccCcCcccccCCCCcCcE
Q 010784          113 HDHILLDNN--DIFSTQGSSIQNIKIDNFLSESYYRATLSD---HKARITCMRL-------FPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       113 i~~~~~~~~--~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~---h~~~V~~~~~-------~~~~~~~~~~~~~~~~~~~  180 (501)
                      ...|+++|.  +.++++....+.|++.|.+.+ .+...+..   .......|+|       ++             +++.
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-------------~G~~  206 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYAD-------------EAEY  206 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBC-------------TTCE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCC-------------CCCE
Confidence            568999973  555565555678888888753 33332222   2235888999       88             7775


Q ss_pred             EEEeeCCC-c------eEEec--C-Ccee-----eeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEecc----
Q 010784          181 LVTSSCDH-S------IRLWW--K-GSCQ-----RCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLS----  240 (501)
Q Consensus       181 l~s~~~dg-~------i~vwd--~-~~~~-----~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~----  240 (501)
                      |+.+...+ .      |.+.+  . +...     ..+... .....++++    + ++.++++-..++.|..+|+.    
T Consensus       207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavd----p~~g~LYvtd~~~g~V~r~d~~~~~~  281 (496)
T 3kya_A          207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIH----PINGELYFNSYEKGQVFRLDLVDYFK  281 (496)
T ss_dssp             EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEEC----TTTCCEEEEETTTTEEEEECHHHHHH
T ss_pred             EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEc----CCCCeEEEEECCCCEEEEEecccccc
Confidence            55555443 2      55554  1 2221     122111 123455664    5 55666666778889999997    


Q ss_pred             ---CCCc-cc---c----ccceeeccCCCCceeEEEEeecCCe-EEEEEeCCCeEEEEECCC--Cccccceecccc---e
Q 010784          241 ---SSGK-RG---Q----QALKATLYGHEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTST--SSAVRSSCCVGM---T  303 (501)
Q Consensus       241 ---~~~~-~~---~----~~~~~~~~~~~~~v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~~--~~~~~~~~~~~~---~  303 (501)
                         ++.. ..   .    ...+... +....-..|+++| +++ ++++-+..+.|+.++...  +...........   .
T Consensus       282 ~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~  359 (496)
T 3kya_A          282 TIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS  359 (496)
T ss_dssp             HHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred             cccCceeecccccccccccceeEec-CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence               4431 00   0    0011111 2233457899998 555 556666778899866532  211000000000   0


Q ss_pred             e-cC--------CCce-eeec--------CCCeEEEEeC--CcEEEEEcCCCceEeeeccC-------------------
Q 010784          304 S-VP--------GVPV-DMKC--------HESMLYIASG--SSVVTIDLRTMQKVMTPAIC-------------------  344 (501)
Q Consensus       304 ~-~~--------~~~~-~~~~--------~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~-------------------  344 (501)
                      . ..        ..+. .+..        ....++++..  ..|+.++ .++ .+.++.+.                   
T Consensus       360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~  437 (496)
T 3kya_A          360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDL  437 (496)
T ss_dssp             CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEET
T ss_pred             cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCc
Confidence            0 01        1122 1222        2234555543  3777777 344 33333221                   


Q ss_pred             -----CCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCC
Q 010784          345 -----KPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQD  378 (501)
Q Consensus       345 -----~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~  378 (501)
                           -.....|+++++ +.++++=..+. |+.+++.....
T Consensus       438 ~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          438 REVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             TTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred             hhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence                 023678999996 77666666666 99999886543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.27  E-value=0.42  Score=42.64  Aligned_cols=132  Identities=15%  Similarity=0.095  Sum_probs=64.0

Q ss_pred             CCCEEEEeeCC--------CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-C-----CeEEEE
Q 010784          221 SGKILASGGED--------ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-D-----SKVRVW  286 (501)
Q Consensus       221 ~~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-d-----g~v~vw  286 (501)
                      ++.+++.|+.+        ..+.+||..+..-    ..+..+......- ++...  ++.+++.|+. +     ..+.+|
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~y  170 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW----GESDPLPYVVYGH-TVLSH--MDLVYVIGGKGSDRKCLNKMCVY  170 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEE----EECCCCSSCCBSC-EEEEE--TTEEEEECCBCTTSCBCCCEEEE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcE----eECCCCCCcccce-eEEEE--CCEEEEEeCCCCCCcccceEEEE
Confidence            55677777743        3588888877532    1222222111111 22222  6677778776 2     468899


Q ss_pred             ECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-------cEEEEEcCCCceEeee--ccCCCcEEEEEEcCCC
Q 010784          287 DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-------SVVTIDLRTMQKVMTP--AICKPILHSFSIMPSK  357 (501)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~d~~~~~~~~~~--~~~~~~v~~v~~~~~~  357 (501)
                      |+.+.+-....    ..........+...++.+++..|.       .+.+||+.+.+-...-  .........+.+  ++
T Consensus       171 d~~~~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~  244 (315)
T 4asc_A          171 DPKKFEWKELA----PMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VG  244 (315)
T ss_dssp             ETTTTEEEECC----CCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred             eCCCCeEEECC----CCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CC
Confidence            98877542211    111111112222334455555431       5888898876443221  111111122222  56


Q ss_pred             cEEEEEcC
Q 010784          358 SLICTGGI  365 (501)
Q Consensus       358 ~~l~~~~~  365 (501)
                      ++++.|+.
T Consensus       245 ~l~v~GG~  252 (315)
T 4asc_A          245 TLYAIGGF  252 (315)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEECCc
Confidence            77777663

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.17  E-value=0.64  Score=41.28  Aligned_cols=143  Identities=15%  Similarity=0.145  Sum_probs=72.1

Q ss_pred             CCCEEEEeeCC-----CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECCC
Q 010784          221 SGKILASGGED-----ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTST  290 (501)
Q Consensus       221 ~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~~  290 (501)
                      ++.+++.|+.+     ..+.+||..+..-    ..+..+......- ++...  ++.+++.|+.+     ..+.+||+.+
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  193 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTRRIGV-GVAVL--NRLLYAVGGFDGTNRLNSAECYYPER  193 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeE----eECCCCCccccce-EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence            56677777644     3578888876542    1121222111111 22222  56777777754     4588999887


Q ss_pred             CccccceecccceecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcEEE
Q 010784          291 SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSLIC  361 (501)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~  361 (501)
                      .+.....    ..........+...++.+++..|       ..+.+||+.+.+-...  +.........+.+  ++++++
T Consensus       194 ~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v  267 (308)
T 1zgk_A          194 NEWRMIT----AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYV  267 (308)
T ss_dssp             TEEEECC----CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred             CeEeeCC----CCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEE
Confidence            6543211    11111111222233455555543       3688999887654322  1111111122222  677777


Q ss_pred             EEcCC-----c-EEEEecCCC
Q 010784          362 TGGIG-----K-AMTWDIRRS  376 (501)
Q Consensus       362 ~~~~d-----~-i~iwd~~~~  376 (501)
                      .|+.+     . +.+||+.+.
T Consensus       268 ~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          268 LGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             ECCBCSSCBCCEEEEEETTTT
T ss_pred             EcCcCCCcccceEEEEcCCCC
Confidence            77632     2 777887764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.09  E-value=0.9  Score=48.68  Aligned_cols=221  Identities=11%  Similarity=0.125  Sum_probs=133.1

Q ss_pred             CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc
Q 010784          230 EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP  309 (501)
Q Consensus       230 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  309 (501)
                      ...+|.|-|+..+..     .....-.-.    +.-.+| ..+.++.-+ ..++.|+|+++.+.+...      .....+
T Consensus        46 ~~~~vvIidl~~~~~-----~~rrpi~Ad----sAIMnP-~~~iiALra-g~~lQiFnl~~k~klks~------~~~e~V  108 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSN-----PIRRPISAD----SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAH------TMTDDV  108 (1630)
T ss_pred             CCceEEEEECCCCCC-----cccccccch----hhccCC-CcceEEEec-CCeEEEeehHHhhhhccc------ccCCCc
Confidence            344788999988654     211111112    223455 445555544 688999999987654432      223334


Q ss_pred             eeeec-CCCeEEEEeCCcEEEEEcCCC-ceEeeeccC----CCcEEEEEEcCCCcEEEEEc-------CCc-EEEEecCC
Q 010784          310 VDMKC-HESMLYIASGSSVVTIDLRTM-QKVMTPAIC----KPILHSFSIMPSKSLICTGG-------IGK-AMTWDIRR  375 (501)
Q Consensus       310 ~~~~~-~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~-------~d~-i~iwd~~~  375 (501)
                      .-..| +++.+.++++..|+.|++... .+.+.+..|    ...|..-..+++.++++..+       -.| +.+|....
T Consensus       109 vfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er  188 (1630)
T 1xi4_A          109 TFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (1630)
T ss_pred             eEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence            44444 567778888899999999743 344444444    56688888889988877544       124 88888876


Q ss_pred             CCCCCCCCCcccccCcccCeEEEEecCC----eEEEEecC---CCcEEEEeCCCc-ccccccc-----c-CCCCCCCcce
Q 010784          376 SQDAVKPQPMAELDGHVGSVTQLHMDPY----KIVTGGRD---DLRINIWETDTG-MLANSLL-----C-NYPEEADIST  441 (501)
Q Consensus       376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~~gs~---dg~i~iwd~~~~-~~~~~~~-----~-~~~~~~~~~v  441 (501)
                      ...       +.+.||.+....+.....    .+++-+..   .+.++|-++... ..-..+.     . ..+.....--
T Consensus       189 ~~s-------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp  261 (1630)
T 1xi4_A          189 KVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP  261 (1630)
T ss_pred             ccc-------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcc
Confidence            543       677788776655554322    45443322   378999998543 1111110     0 0111122333


Q ss_pred             eeeEeeccccEEEEeecCCCceEEEeeccCCccce
Q 010784          442 GCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPV  476 (501)
Q Consensus       442 ~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~  476 (501)
                      .++..|+....+..-+  .-|.|+++|+.++...+
T Consensus       262 v~~~vs~k~g~iy~it--k~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          262 VAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             eEEEeccccCEEEEEe--cCceEEEEecccchhhh
Confidence            4567777777777777  56999999998877543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.04  E-value=0.77  Score=40.98  Aligned_cols=226  Identities=12%  Similarity=0.107  Sum_probs=102.9

Q ss_pred             EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc-eeEEEEeecCCeEEEEEeC----CC-------eEEEEECCCC
Q 010784          224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP-IKLMSVAGHKSFLLVTISK----DS-------KVRVWDTSTS  291 (501)
Q Consensus       224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~l~s~s~----dg-------~v~vwd~~~~  291 (501)
                      +++.|+.  .+.+||..+..-    .. ......... -.++..  .++.+++.|+.    ++       .+..||..+.
T Consensus        18 i~~~GG~--~~~~yd~~~~~W----~~-~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   88 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENEC----YL-TALAEQIPRNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS   88 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEE----EE-EEECTTSCSSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEEETTTT
T ss_pred             hhhcccc--ceEEECCCCCce----ec-ccCCccCCccceEEEE--ECCEEEEECCcccCccccCCCccccEEEEeCCCC
Confidence            4555553  378888887652    11 111111111 122222  36677888873    12       2778888876


Q ss_pred             ccccceecccceecCCCceeeecCCCeEEEEeC---------CcEEEEEcCCCceEeeeccCCCcE-EEEEEcCCCcEEE
Q 010784          292 SAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---------SSVVTIDLRTMQKVMTPAICKPIL-HSFSIMPSKSLIC  361 (501)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~d~~~~~~~~~~~~~~~~v-~~v~~~~~~~~l~  361 (501)
                      +....    ...........+...++.+++..|         ..+.+||..+.+-...-....... .+++. .++++++
T Consensus        89 ~W~~~----~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv  163 (318)
T 2woz_A           89 EWVGL----PPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYC  163 (318)
T ss_dssp             EEEEC----SCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEE
T ss_pred             cEEEC----CCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEE
Confidence            54221    111111111222223445555533         147888887765432211111111 11222 3677777


Q ss_pred             EEcC------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCccccccc
Q 010784          362 TGGI------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGMLANSL  429 (501)
Q Consensus       362 ~~~~------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~~~~~~  429 (501)
                      .|+.      -. +.+||+.+.+-.    .+..+...... .+++...+++++.|+.+     ..+.+||+.+.+-...-
T Consensus       164 ~GG~~~~~~~~~~~~~yd~~~~~W~----~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  238 (318)
T 2woz_A          164 LGGKTDDKKCTNRVFIYNPKKGDWK----DLAPMKTPRSM-FGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT  238 (318)
T ss_dssp             ECCEESSSCBCCCEEEEETTTTEEE----EECCCSSCCBS-CEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECC
T ss_pred             EcCCCCCCCccceEEEEcCCCCEEE----ECCCCCCCccc-ceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECC
Confidence            7762      13 889998875411    11111111111 12333345555555433     34778998775432211


Q ss_pred             ccCCCCCCCcceeeeEeeccccEEEEeecCC------------CceEEEeeccCCc
Q 010784          430 LCNYPEEADISTGCSAMAVSGCRIVTASYGE------------PGLLQFRDFSNAT  473 (501)
Q Consensus       430 ~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~------------~g~i~~w~~~~~~  473 (501)
                      .  .+.   ......+...++++++.|+.+.            ...+.+||.....
T Consensus       239 ~--~p~---~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          239 E--FPQ---ERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             C--CSS---CCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             C--CCC---cccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            1  001   1111122234677888887531            1346677765543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.94  E-value=0.94  Score=41.18  Aligned_cols=238  Identities=11%  Similarity=0.021  Sum_probs=111.4

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec---ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL---SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~---~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      .....|+++++|.++++-.. +.|.+++ ......+..+   .........|+|+|+.         ..++.+.++-...
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~-g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf---------~~~g~lYv~~~~~   99 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERP-GRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRF---------PQEPYVYAYRTVA   99 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETT-TEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTT---------TTSCEEEEEEEEC
T ss_pred             CCceEEEEcCCCeEEEEeCC-CeEEEEE-CCCccEeecceEeecCCCCceeEEECCCC---------CCCCEEEEEEecC
Confidence            34789999999997776544 8888887 2211212111   1224567889999820         0013444443322


Q ss_pred             -----CceEEec-CCc-------eeeecc---CCCCceEEEEeeecCCCCCCEEEEeeC-------------CCcEEEEe
Q 010784          188 -----HSIRLWW-KGS-------CQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGE-------------DATVRLWS  238 (501)
Q Consensus       188 -----g~i~vwd-~~~-------~~~~~~---~h~~~v~~l~~s~~~~~~~~~l~sg~~-------------dg~i~iwd  238 (501)
                           +.|..++ .+.       .+..+.   ........++|.    ++|.+.++-+.             .|.|.-++
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~----pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~  175 (352)
T 2ism_A          100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG----PDGMLYVTTGEVYERELAQDLASLGGKILRLT  175 (352)
T ss_dssp             TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC----TTSCEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred             CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC----CCCCEEEEECCCCCCccccCCCCCceEEEEEc
Confidence                 5666676 321       111122   111223578885    78876666432             14555555


Q ss_pred             ccCCCcccc-------ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeE------EEEECCCCccccc---------
Q 010784          239 LSSSGKRGQ-------QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV------RVWDTSTSSAVRS---------  296 (501)
Q Consensus       239 ~~~~~~~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v------~vwd~~~~~~~~~---------  296 (501)
                      .+..-....       ........++.. ...++|+|.++.++++-.....+      .+.-+..+....-         
T Consensus       176 ~dG~~p~~npf~~~~~~~~~i~a~G~rn-p~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~  254 (352)
T 2ism_A          176 PEGEPAPGNPFLGRRGARPEVYSLGHRN-PQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGND  254 (352)
T ss_dssp             TTSSBCTTCTTTTCTTSCTTEEEECCSE-ECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred             CCCCCCCCCcccCCCCCCccEEEEcCCC-cccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCC
Confidence            543100000       000111123332 45678887455555554333321      1222222221000         


Q ss_pred             ---eecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCce------EeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784          297 ---SCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQK------VMTPAICKPILHSFSIMPSKSLICTGG  364 (501)
Q Consensus       297 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~------~~~~~~~~~~v~~v~~~~~~~~l~~~~  364 (501)
                         ............+..+.+....++++.-  ..|...++.....      ...+......+..+++.|||.++++..
T Consensus       255 ~~~~~p~~~~~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          255 PRYRDPLYFWPQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TTSCCCSEECTTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCcCCeEecCCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence               0000000111233444444555666543  3666666654321      122212235688999999998777664

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.80  E-value=2  Score=43.83  Aligned_cols=317  Identities=11%  Similarity=0.014  Sum_probs=159.1

Q ss_pred             CceEEeeCCc--EEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          113 HDHILLDNND--IFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       113 i~~~~~~~~~--~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      |.++..+.++  .++.+  . +-+..++..++ +......-....|.++....             +|.+.+ |..+| +
T Consensus       193 i~~i~~d~~~~~lWigt--~-~Gl~~~~~~~~-~~~~~~~l~~~~i~~i~~d~-------------~g~lWi-gT~~G-l  253 (758)
T 3ott_A          193 VNSLLEDTTRQCVWIGT--E-GYLFQYFPSTG-QIKQTEAFHNNSIKSLALDG-------------NGDLLA-GTDNG-L  253 (758)
T ss_dssp             EEEEEEETTTTEEEEEE--E-EEEEEEETTTT-EEEEEEEEEEEEEEEEEECT-------------TCCEEE-EETTE-E
T ss_pred             eEEEEEECCCCEEEEEE--C-CCCeEEcCCCC-eEEeccCCCCCeEEEEEEcC-------------CCCEEE-EeCCc-e
Confidence            6778888754  35554  2 34666776643 22111111234577776655             555554 44444 7


Q ss_pred             EEec-CCceeeeccC--------CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee--ec--cCC
Q 010784          191 RLWW-KGSCQRCFKG--------HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA--TL--YGH  257 (501)
Q Consensus       191 ~vwd-~~~~~~~~~~--------h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--~~--~~~  257 (501)
                      .+++ .......+..        ....|.++..    +.+|. |-.|+..| +.+......-.     ...  ..  ...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~----D~~g~-lWiGT~~G-l~~~~~~~~~~-----~~~~~~~~~~~~  322 (758)
T 3ott_A          254 YVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFA----DQEHN-IWLGTDYG-ISLSRYNSALQ-----FIPISQITGTGD  322 (758)
T ss_dssp             EEECCTTSCCEEECCCTTCTTSCSCSCEEEEEE----CTTCC-EEEEESSS-EEEECCCC-CE-----EEEHHHHSCSCC
T ss_pred             eEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEE----cCCCC-EEEEeCCc-ccccccCCcee-----EEecccCCCCCC
Confidence            7777 2222222211        2245777765    35554 44555666 54443321110     010  00  112


Q ss_pred             CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc--ceeccc--ceecCCCceeeecC-CCeEEEEeCCcEEEEEc
Q 010784          258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR--SSCCVG--MTSVPGVPVDMKCH-ESMLYIASGSSVVTIDL  332 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~d~  332 (501)
                      ...|.++.... ++ .|..|+.+| +..++..+++...  ......  .......+.++..+ ...+++++.+.+..+|.
T Consensus       323 ~~~v~~i~~D~-~g-~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~GL~~~~~  399 (758)
T 3ott_A          323 GNQFYSLFRDS-KG-FYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATDGSINRYDY  399 (758)
T ss_dssp             CCBEEEEEECT-TC-CEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEETTEEEEEET
T ss_pred             CceEEEEEEcC-CC-CEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeCCcHhhcCc
Confidence            34577776653 34 455566655 6667665432110  000000  00111234455444 34578888778999998


Q ss_pred             CCCceEeeec-c-----CCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCC-----CCCCCCCCcccccC-cccCeEEEEe
Q 010784          333 RTMQKVMTPA-I-----CKPILHSFSIMPSKSLICTGGIGKAMTWDIRRS-----QDAVKPQPMAELDG-HVGSVTQLHM  400 (501)
Q Consensus       333 ~~~~~~~~~~-~-----~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~-----~~~~~~~~~~~~~~-h~~~v~~l~~  400 (501)
                      .+++...... .     ....|.++...++|.+.+....+++.++|..+.     .............+ ....|.++..
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~  479 (758)
T 3ott_A          400 ATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIP  479 (758)
T ss_dssp             TTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEE
T ss_pred             CCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEE
Confidence            8765433211 1     134588888888887666444556999986531     00000000000011 1235889988


Q ss_pred             cCC-eEEE-EecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          401 DPY-KIVT-GGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       401 ~~~-~~l~-~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      +++ .+.+ +|+. +-|..+|..+++...... . .......+.++....+|.+.+..   ..| +..++.
T Consensus       480 d~~g~lWi~~~t~-~Gl~~~d~~~~~~~~~~~-~-~~~~~~~~~~i~~d~~g~lWigt---~~G-l~~~~~  543 (758)
T 3ott_A          480 DNEGNVWVLLYNN-KGIDKINPRTREVTKLFA-D-ELTGEKSPNYLLCDEDGLLWVGF---HGG-VMRINP  543 (758)
T ss_dssp             CTTSCEEEEETTC-SSEEEEETTTTEEEEECT-T-TSCGGGCEEEEEECTTSCEEEEE---TTE-EEEECC
T ss_pred             cCCCCEEEEccCC-CCcEEEeCCCCceEEecC-C-CcCCCcccceEEECCCCCEEEEe---cCc-eEEEec
Confidence            888 7766 3444 458889987765433211 0 01113456777777788776654   234 555553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.78  E-value=1.1  Score=40.65  Aligned_cols=182  Identities=12%  Similarity=0.127  Sum_probs=100.3

Q ss_pred             eeEEEEeecCCeEEEEE------------eCCCeEEEEECCCCcc-ccceecccc-e-ecCCCceeeecC----CCe-EE
Q 010784          261 IKLMSVAGHKSFLLVTI------------SKDSKVRVWDTSTSSA-VRSSCCVGM-T-SVPGVPVDMKCH----ESM-LY  320 (501)
Q Consensus       261 v~~l~~~~~~~~~l~s~------------s~dg~v~vwd~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~----~~~-~~  320 (501)
                      ...+.+.+ ++..++++            ..+|.|.++|..+... ......... . .....+..+...    +.. ++
T Consensus        52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34556665 55444443            2689999999874321 111111110 0 112344444442    232 44


Q ss_pred             EEe----CCcEEEEEcCCCce----EeeeccC-CCcEEEEEEcCCCcEEEEEc---C--------------Cc-EEEEec
Q 010784          321 IAS----GSSVVTIDLRTMQK----VMTPAIC-KPILHSFSIMPSKSLICTGG---I--------------GK-AMTWDI  373 (501)
Q Consensus       321 ~~~----~~~i~~~d~~~~~~----~~~~~~~-~~~v~~v~~~~~~~~l~~~~---~--------------d~-i~iwd~  373 (501)
                      ++.    ++.+.+|++.....    +..+.+. -...+.+.+.++|.++++..   .              .+ |.-+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            442    34677777654322    2333322 23578999999999888765   1              12 444544


Q ss_pred             CCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCC-ccc--ccccccCCCCCCCcceeeeEeec
Q 010784          374 RRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT-GML--ANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       374 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                        ++ .      ..+...-...+.++|+|+  .++++-+..+.|..|++.. ++.  ...+.      .....-.+++.+
T Consensus       211 --~~-~------~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~------~~g~PDGi~vD~  275 (355)
T 3sre_A          211 --ND-V------RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS------FDTLVDNISVDP  275 (355)
T ss_dssp             --TC-C------EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE------CSSEEEEEEECT
T ss_pred             --Ce-E------EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe------CCCCCceEEEeC
Confidence              22 1      222222345789999999  5666667789999999863 322  11221      124566788998


Q ss_pred             -cccEEEEeec
Q 010784          449 -SGCRIVTASY  458 (501)
Q Consensus       449 -~g~~l~s~~~  458 (501)
                       +|++.+++..
T Consensus       276 e~G~lwva~~~  286 (355)
T 3sre_A          276 VTGDLWVGCHP  286 (355)
T ss_dssp             TTCCEEEEEES
T ss_pred             CCCcEEEEecC
Confidence             5988876653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.70  E-value=2.9  Score=45.02  Aligned_cols=225  Identities=11%  Similarity=0.082  Sum_probs=115.5

Q ss_pred             CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCC
Q 010784          130 SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNG  207 (501)
Q Consensus       130 ~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~  207 (501)
                      ....+.|-|+..+..+.+.-..-.    +.-.+|             ..+.+|.-. ..++.|+|  +...++.+.- ..
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi~Ad----sAIMnP-------------~~~iiALra-g~~lQiFnl~~k~klks~~~-~e  106 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPISAD----SAIMNP-------------ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD  106 (1630)
T ss_pred             CCceEEEEECCCCCCcccccccch----hhccCC-------------CcceEEEec-CCeEEEeehHHhhhhccccc-CC
Confidence            344777888876544332211111    122345             556666554 78899999  4445555543 34


Q ss_pred             ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC----CCceeEEEEeecCCeEEEEEe-----
Q 010784          208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH----EKPIKLMSVAGHKSFLLVTIS-----  278 (501)
Q Consensus       208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~v~~l~~~~~~~~~l~s~s-----  278 (501)
                      +|.-=.|.     +.+.|+-.+ +..|.-|++.....     +...+..|    ...|..-..+++..-.+++|-     
T Consensus       107 ~VvfWkWi-----s~~~l~lVT-~~aVyHW~~~~~s~-----P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~  175 (1630)
T 1xi4_A          107 DVTFWKWI-----SLNTVALVT-DNAVYHWSMEGESQ-----PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN  175 (1630)
T ss_pred             CceEEEec-----CCCeeEEEc-CCeEEEeccCCCCc-----cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCC
Confidence            67666774     344555444 35899999976433     44444444    345555566653333333332     


Q ss_pred             -CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEc--C
Q 010784          279 -KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIM--P  355 (501)
Q Consensus       279 -~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~--~  355 (501)
                       -.|.+.+|..+.+..                                             +.+.+|......+...  +
T Consensus       176 ~v~G~mQLyS~er~~s---------------------------------------------Q~iegha~~F~~~~~~~~~  210 (1630)
T 1xi4_A          176 RVVGAMQLYSVDRKVS---------------------------------------------QPIEGHAASFAQFKMEGNA  210 (1630)
T ss_pred             cccceeeeeecccccc---------------------------------------------hhhhHhHhhhheeccCCCC
Confidence             235566666554321                                             1122222222111111  0


Q ss_pred             -CCcEEEEEc---CCc-EEEEecCCC---CCCCCCCCcccccC---cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc
Q 010784          356 -SKSLICTGG---IGK-AMTWDIRRS---QDAVKPQPMAELDG---HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       356 -~~~~l~~~~---~d~-i~iwd~~~~---~~~~~~~~~~~~~~---h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~  423 (501)
                       ...+++.+.   .|+ ++|-++...   ...+..+.+..+-.   -..-..++..++. .++..-+.-|.|+++|+.+|
T Consensus       211 ~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~  290 (1630)
T 1xi4_A          211 EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG  290 (1630)
T ss_pred             CCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc
Confidence             111222221   234 888887543   11111111111111   1233457778887 55555568999999999999


Q ss_pred             cccccc
Q 010784          424 MLANSL  429 (501)
Q Consensus       424 ~~~~~~  429 (501)
                      .++..-
T Consensus       291 ~~i~~~  296 (1630)
T 1xi4_A          291 TCIYMN  296 (1630)
T ss_pred             hhhhhc
Confidence            988765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.62  E-value=1.4  Score=40.74  Aligned_cols=274  Identities=10%  Similarity=0.060  Sum_probs=143.9

Q ss_pred             eEEeeCCcEEEee--cCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          115 HILLDNNDIFSTQ--GSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       115 ~~~~~~~~~~~~~--g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      .+.+..|.-..+-  .+....+.|-|+..+....+.-..-.    +.-.+|             ..+.+|.-. ..++.|
T Consensus        29 ~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP-------------~~~iiALra-g~~lQi   90 (494)
T 1bpo_A           29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD----SAIMNP-------------ASKVIALKA-GKTLQI   90 (494)
T ss_dssp             TEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCCS----EEEECS-------------SSSCEEEEE-TTEEEE
T ss_pred             eeeeecCceEEEEecCCCCCeEEEEECCCCCcceecccccc----eeeeCC-------------CCcEEEEec-CCeEEE
Confidence            3444444433331  33445788888887544433322222    223455             556666654 789999


Q ss_pred             ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC----CCceeEEEE
Q 010784          193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH----EKPIKLMSV  266 (501)
Q Consensus       193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~v~~l~~  266 (501)
                      +|  +...++.+.- ...|.-=.|-     +.+.|+-.+ +..|.-|++.....     +...+..|    ...|..-..
T Consensus        91 Fnle~K~klks~~~-~e~VvfWkWi-----s~~~l~lVT-~taVyHWsi~~~s~-----P~kvFdR~~~L~~~QIInY~~  158 (494)
T 1bpo_A           91 FNIEMKSKMKAHTM-TDDVTFWKWI-----SLNTVALVT-DNAVYHWSMEGESQ-----PVKMFDRHSSLAGCQIINYRT  158 (494)
T ss_dssp             EETTTTEEEEEEEC-SSCCCEEEEE-----ETTEEEEEC-SSEEEEEESSSSCC-----CEEEEECCGGGTTCEEEEEEE
T ss_pred             EchHHhhhhcceec-CCCceEEEec-----CCCeEEEEc-CCeeEEecccCCCC-----chhheecchhcccceEEEEEE
Confidence            99  5555666554 3466666775     344555554 45899999976443     44445444    234555556


Q ss_pred             eecCCeEEE-EEe------CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784          267 AGHKSFLLV-TIS------KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM  339 (501)
Q Consensus       267 ~~~~~~~l~-s~s------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  339 (501)
                      ++ +.+.++ +|-      -.|.+.+|..+.+..                                             +
T Consensus       159 d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s---------------------------------------------Q  192 (494)
T 1bpo_A          159 DA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---------------------------------------------Q  192 (494)
T ss_dssp             CT-TSSEEEEEEEEEETTEEEEEEEEEESTTCCE---------------------------------------------E
T ss_pred             CC-CCCeEEEEeecccCCcccceEEEeecccccc---------------------------------------------c
Confidence            65 344433 332      135566666554321                                             2


Q ss_pred             eeccCCCcEEEEEEcCC---CcEEEEEc---CCc-EEEEecCCC---CCCCCCCCccccc---CcccCeEEEEecCC-eE
Q 010784          340 TPAICKPILHSFSIMPS---KSLICTGG---IGK-AMTWDIRRS---QDAVKPQPMAELD---GHVGSVTQLHMDPY-KI  405 (501)
Q Consensus       340 ~~~~~~~~v~~v~~~~~---~~~l~~~~---~d~-i~iwd~~~~---~~~~~~~~~~~~~---~h~~~v~~l~~~~~-~~  405 (501)
                      .+.+|......+.+..+   ..+++-+.   .++ ++|.++...   ...+..+.+..+-   .-.+-..++..++. .+
T Consensus       193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv  272 (494)
T 1bpo_A          193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV  272 (494)
T ss_dssp             EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred             hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE
Confidence            23334333333322211   12233232   234 888888543   1111011111111   11334567888888 55


Q ss_pred             EEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          406 VTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       406 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      +..-+.-|.|++||++++.++..-+     -....|...+-.....-++...  ..|.|.--.++.
T Consensus       273 iyviTK~G~i~lyDleTgt~i~~nr-----Is~~~iF~t~~~~~~~Gi~~Vn--r~GqVl~v~v~e  331 (494)
T 1bpo_A          273 VFLITKYGYIHLYDLETGTCIYMNR-----ISGETIFVTAPHEATAGIIGVN--RKGQVLSVCVEE  331 (494)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEEETTTTEEEEEE--TTCEEEEEEECT
T ss_pred             EEEEecCceEEEEecccceeeeeec-----ccCCceEEecccCCCCcEEEEc--cCceEEEEEEcc
Confidence            5555699999999999999987763     2234455444444444444444  456666555543

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=95.53  E-value=0.012  Score=40.97  Aligned_cols=65  Identities=11%  Similarity=0.123  Sum_probs=38.1

Q ss_pred             ccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCccccCCCCCcchhHHHHHHHHHH
Q 010784           23 LNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIA   92 (501)
Q Consensus        23 Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (501)
                      .|.+++.-||...++..|.++-.-|-.  -+-.++.||+++|.+.|+..-+..   ...|++.|.+...+
T Consensus        13 ~Py~lL~PVLek~tp~QL~~IE~~nP~--L~~dTdeLWk~~c~rdF~~~~p~e---~esWRelY~rl~~e   77 (97)
T 4hfx_A           13 VPYSVLEPVLERCTPDQLYRIEEYNHV--LIEETDQLWKVHCHRDFKEERPEE---YESWREMYLRLQDA   77 (97)
T ss_dssp             -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSCCCS---SSCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHccCCHHHHHHHHHhCcc--cchhhHHHHHHHHHhHCcccCCCC---CCCHHHHHHHHHHH
Confidence            589999999999999999999877653  345788999999999988655433   45688888765543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.53  E-value=0.035  Score=52.61  Aligned_cols=132  Identities=14%  Similarity=0.095  Sum_probs=84.3

Q ss_pred             cEEEEEcCC----CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCC---C----cccccCcc
Q 010784          326 SVVTIDLRT----MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQ---P----MAELDGHV  392 (501)
Q Consensus       326 ~i~~~d~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~---~----~~~~~~h~  392 (501)
                      .+.+.|.+.    +..+..+-.-......+.++|||+++++++.-.  +.++|++........+   +    +...+ -.
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G  377 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG  377 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence            477888776    333322222344456788999999999998433  9999998532210000   0    11222 13


Q ss_pred             cCeEEEEecCC-eEEEEecCCCcEEEEeCCCc----------ccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          393 GSVTQLHMDPY-KIVTGGRDDLRINIWETDTG----------MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       393 ~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      -.....+|+++ ...++---|..|.-|++...          ..+..+..|...+|.....+-.-.|||++|++...
T Consensus       378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            35677889999 77788789999999999753          34555555555555544444455788999988653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.05  E-value=1.9  Score=39.03  Aligned_cols=51  Identities=12%  Similarity=-0.022  Sum_probs=24.3

Q ss_pred             cEEEEEcCCCce--EeeeccCCCcEEEEEEcCCCcEEEEEcCC------c-EEEEecCCCCC
Q 010784          326 SVVTIDLRTMQK--VMTPAICKPILHSFSIMPSKSLICTGGIG------K-AMTWDIRRSQD  378 (501)
Q Consensus       326 ~i~~~d~~~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~d------~-i~iwd~~~~~~  378 (501)
                      .+.+||+.+.+-  +..+......-.++.  .++++++.|+.+      . +.++++++.+.
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~  345 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKV  345 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence            467888876543  222222222222222  367777777732      2 55567777654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.77  E-value=1.8  Score=35.95  Aligned_cols=100  Identities=8%  Similarity=-0.030  Sum_probs=59.1

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcce--------eEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARI--------TCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V--------~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      .++.++|+|+|.+.+.  .++.+.-.+..+. .. ..+-+-...|        .++.|.|             +|.+.++
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~-~~-~~W~~s~t~IG~~Gw~~F~a~~fD~-------------~G~LYav  104 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTH-DN-DNWMGRAKKIGNGGWNQFQFLFFDP-------------NGYLYAV  104 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCS-TT-CCHHHHCEEEECSCGGGCSEEEECT-------------TSCEEEE
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCC-Cc-ccccccccEecccccccceEEEECC-------------CCCEEEe
Confidence            5789999999998887  4555444444321 11 1111112223        6777777             7888877


Q ss_pred             eeCCCceEEec--CCceee-------eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEE
Q 010784          184 SSCDHSIRLWW--KGSCQR-------CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL  236 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~~~~-------~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~i  236 (501)
                        .||.|.-++  +.....       .-..--..+..|.|.    |+|.+.+..  |+.+.-
T Consensus       105 --~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~----p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          105 --SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH----PNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             --ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC----TTSCEEEEE--TTEEEE
T ss_pred             --CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEEC----CCceEEEEe--CCcEEe
Confidence              569998887  211111       011122567888885    888777766  777543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.52  E-value=4.2  Score=36.85  Aligned_cols=61  Identities=3%  Similarity=-0.082  Sum_probs=39.2

Q ss_pred             cCeEEEEec-------CC-eEEEEecCCCcEEEEeCCCc-ccc--cccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          393 GSVTQLHMD-------PY-KIVTGGRDDLRINIWETDTG-MLA--NSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       393 ~~v~~l~~~-------~~-~~l~~gs~dg~i~iwd~~~~-~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      .....+++.       .+ .++++.-..+.|...++... +..  ..+.    ......+..+++.|||.+.++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~----~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF----KNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC----TTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec----cCCCCCeeEEEECCCCcEEEEEe
Confidence            456778873       34 77777667788988888753 221  1221    11235688899999997766653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.49  E-value=4.6  Score=37.24  Aligned_cols=146  Identities=17%  Similarity=0.171  Sum_probs=80.3

Q ss_pred             CCeEEEEEeCCCeEEEEECCCCccccceecccceec-CCCceeeecCCCeEEEEeCCcEEEEEcCCCc------------
Q 010784          270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV-PGVPVDMKCHESMLYIASGSSVVTIDLRTMQ------------  336 (501)
Q Consensus       270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------  336 (501)
                      ++..++.+- ++.||.-++.....-+.......... ......+..+++.+.+.....|.+..+..+.            
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence            444454443 36788777764421111111110111 1222444455555555666688888886321            


Q ss_pred             eEeeecc------CCCcEEEEEEcCC---CcEEEEEcCCc-EEEEecCCCCCCCCCCCc------ccccCcccCeEEEEe
Q 010784          337 KVMTPAI------CKPILHSFSIMPS---KSLICTGGIGK-AMTWDIRRSQDAVKPQPM------AELDGHVGSVTQLHM  400 (501)
Q Consensus       337 ~~~~~~~------~~~~v~~v~~~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~------~~~~~h~~~v~~l~~  400 (501)
                      ..+.+..      ...+|..+.|+|-   +..|++-..|+ |++||+......  +..+      ..+......|.+++|
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~--P~~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEK--PIVLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSC--CEEESCCCSEEESCSSCCCEEEEEE
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCC--CcchhccccccCCCcccceEEEEEE
Confidence            1122222      2467999999995   45777777777 999999974322  1100      111222357889999


Q ss_pred             cCC--e-EEEEecCCCcEEEE
Q 010784          401 DPY--K-IVTGGRDDLRINIW  418 (501)
Q Consensus       401 ~~~--~-~l~~gs~dg~i~iw  418 (501)
                      .++  . ++++.+..|.|+-.
T Consensus       188 g~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCCcEEEEEecCCCCCEEEE
Confidence            988  3 34344577877654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.38  E-value=0.73  Score=43.57  Aligned_cols=108  Identities=13%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc------CcccCeEEEEecC----C-eEEEEecC--
Q 010784          346 PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD------GHVGSVTQLHMDP----Y-KIVTGGRD--  411 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~----~-~~l~~gs~--  411 (501)
                      .....++|.|+|+++++-..++ |++++..+++..    .+..+.      ........|+++|    + .++++-+.  
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~----~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK----TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE----EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe----EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence            4567999999999999888776 888876544321    111111      1245678999998    5 55555432  


Q ss_pred             ----------CCcEEEEeCCCc--cc--ccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          412 ----------DLRINIWETDTG--ML--ANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       412 ----------dg~i~iwd~~~~--~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                                ...|.-|+...+  +.  ...+....+.........++|.|||.+.++.+
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                      235666665322  10  11111101111223468899999998777754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.79  E-value=5.4  Score=36.09  Aligned_cols=242  Identities=10%  Similarity=-0.002  Sum_probs=115.2

Q ss_pred             ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec---CCeEEEEEeC-----
Q 010784          208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH---KSFLLVTISK-----  279 (501)
Q Consensus       208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~l~s~s~-----  279 (501)
                      .-..|+|.    ++|+.|+.+...|.|++++.+.......................|+++|+   ++.+.++-+.     
T Consensus        19 ~P~~i~~~----pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           19 HPWALAFL----PDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SEEEEEEC----STTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CcEEEEEc----CCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            45688885    78883444567899999885322100000000111122345688999984   4555554333     


Q ss_pred             --CCeEEEEECCCCcc-ccceec-cccee----cCCCceeeecCCC-eEEEEeCC---------------cEEEEEcCCC
Q 010784          280 --DSKVRVWDTSTSSA-VRSSCC-VGMTS----VPGVPVDMKCHES-MLYIASGS---------------SVVTIDLRTM  335 (501)
Q Consensus       280 --dg~v~vwd~~~~~~-~~~~~~-~~~~~----~~~~~~~~~~~~~-~~~~~~~~---------------~i~~~d~~~~  335 (501)
                        ...|..+++..... +..... .....    .......+.+.++ .++++.+.               .|.-++....
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence              23566666653311 111110 00000    0111234555544 45555532               3555554421


Q ss_pred             c------------eEeeeccCCCcEEEEEEcC-CCcEEEEEcC-Cc-EEEEecCCCCCC---------------------
Q 010784          336 Q------------KVMTPAICKPILHSFSIMP-SKSLICTGGI-GK-AMTWDIRRSQDA---------------------  379 (501)
Q Consensus       336 ~------------~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~-d~-i~iwd~~~~~~~---------------------  379 (501)
                      -            ....+...-.....++|+| +++++++-.. ++ =.|.-+..+...                     
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence            0            1111111123467899999 6766665432 11 222222222110                     


Q ss_pred             ----CCCCCcccccCcccCeEEEEecC-------C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEee
Q 010784          380 ----VKPQPMAELDGHVGSVTQLHMDP-------Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMA  447 (501)
Q Consensus       380 ----~~~~~~~~~~~h~~~v~~l~~~~-------~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s  447 (501)
                          ....++..+.. ...+..+++..       + .++++.-..+.|...++..++.......-  ......+..+++.
T Consensus       255 ~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~rp~~v~~~  331 (353)
T 2g8s_A          255 EIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL--TDRGQRIRDVRTG  331 (353)
T ss_dssp             SSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES--GGGCCCEEEEEEC
T ss_pred             CCCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc--cCCCCceeEEEEC
Confidence                00112222222 23566777753       3 67777667788888887755433221100  1113468889999


Q ss_pred             ccccEEEEe
Q 010784          448 VSGCRIVTA  456 (501)
Q Consensus       448 ~~g~~l~s~  456 (501)
                      |||.+.++.
T Consensus       332 pdG~lyv~t  340 (353)
T 2g8s_A          332 PDGYLYVLT  340 (353)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCcEEEEE
Confidence            999866653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.85  E-value=0.68  Score=38.38  Aligned_cols=100  Identities=9%  Similarity=-0.045  Sum_probs=60.2

Q ss_pred             cEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccC--------eEEEEecCC-eEEEEecCCCcEEE
Q 010784          347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGS--------VTQLHMDPY-KIVTGGRDDLRINI  417 (501)
Q Consensus       347 ~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~--------v~~l~~~~~-~~l~~gs~dg~i~i  417 (501)
                      .+..++|+|+|.+.++ .++.++-.+..+.+..       ...+-...        ..++.|+|+ .+.++  .||.|+-
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~-------~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr  111 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND-------NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYK  111 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-------CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEE
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcc-------cccccccEecccccccceEEEECCCCCEEEe--CCCEEEE
Confidence            5669999999998888 5555666665543221       11111122        378899999 66666  5699988


Q ss_pred             EeCCCcccccccccCCC--CCCCcceeeeEeeccccEEEEe
Q 010784          418 WETDTGMLANSLLCNYP--EEADISTGCSAMAVSGCRIVTA  456 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~s~  456 (501)
                      ++-.+...-.-+.....  ..-=..+..+.|.|+|.+.++.
T Consensus       112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            88644222221110000  0011357889999999888776

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.45  E-value=3.3  Score=37.55  Aligned_cols=108  Identities=10%  Similarity=0.190  Sum_probs=58.8

Q ss_pred             CcEEEEEEcCCCc-EEEEEcCCcEEEEecCCCCCCCCCCCcccc----cCcccCeEEEEecC----C-eEEEEecC----
Q 010784          346 PILHSFSIMPSKS-LICTGGIGKAMTWDIRRSQDAVKPQPMAEL----DGHVGSVTQLHMDP----Y-KIVTGGRD----  411 (501)
Q Consensus       346 ~~v~~v~~~~~~~-~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~----~-~~l~~gs~----  411 (501)
                      .....|+|.|+|+ ++++-..+.|++++... +..   ..+..+    .........|+++|    + .++++-+.    
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~---~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLS---APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EEC---CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-cee---eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            3467899999999 77766554588888532 211   111111    12244678999998    3 55555332    


Q ss_pred             ---CCcEEEEeCCCcc----cccccccCCCC--CCCcceeeeEeeccccEEEEee
Q 010784          412 ---DLRINIWETDTGM----LANSLLCNYPE--EADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       412 ---dg~i~iwd~~~~~----~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                         ...|..|++....    ....+....+.  .....-..++|.|||.+.++.+
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence               2356667664321    11111111111  1112245799999997666654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.99  E-value=1.1  Score=40.21  Aligned_cols=193  Identities=9%  Similarity=0.009  Sum_probs=94.0

Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCC-CCceeEEEEe--ecCCeEEEEE-eCCCeEEEEECCCCccccce
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-EKPIKLMSVA--GHKSFLLVTI-SKDSKVRVWDTSTSSAVRSS  297 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~--~~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~  297 (501)
                      +.+++.++.||.|.-.|..+++.      .-.+... ..++....-.  +.++..++.. +.||.|..++..++......
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~------~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~   83 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHI------IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL   83 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEE------EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcE------EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence            45788899999999999988864      3333221 1122111100  0123444443 68999999998887433221


Q ss_pred             ecccceecCCCceeee----c-------CCCeEEEEe-CCcEEEEEcCCCceEeeeccCC--Cc-----EEEEEEc----
Q 010784          298 CCVGMTSVPGVPVDMK----C-------HESMLYIAS-GSSVVTIDLRTMQKVMTPAICK--PI-----LHSFSIM----  354 (501)
Q Consensus       298 ~~~~~~~~~~~~~~~~----~-------~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~--~~-----v~~v~~~----  354 (501)
                      ....  .....++...    .       .+..+++.+ .+.+...|+++|+.+..+....  +.     ..+....    
T Consensus        84 ~~~~--lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~  161 (339)
T 2be1_A           84 SIRQ--LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKL  161 (339)
T ss_dssp             EHHH--HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----------------
T ss_pred             cccc--ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccc
Confidence            1110  0111111110    0       223333333 3489999999999998887432  11     1111110    


Q ss_pred             -CCCcEEEEEcCCc-EEEEecCCCCCCCCCCC-cccccCcc--cCe-EEEEecCC-eEEEEecCCCcEEEEeCCCccccc
Q 010784          355 -PSKSLICTGGIGK-AMTWDIRRSQDAVKPQP-MAELDGHV--GSV-TQLHMDPY-KIVTGGRDDLRINIWETDTGMLAN  427 (501)
Q Consensus       355 -~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~-~~~~~~h~--~~v-~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~  427 (501)
                       -.+..++.+..+. +.+.+ ++++ .  ... ........  ..+ ..-..+.+ .+++ ++.||.|.-+|..+|+.+-
T Consensus       162 d~~~~~v~ig~~~y~v~~~~-~sG~-~--W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          162 QECENMIVIGKTIFELGIHS-YDGA-S--YNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             ---CCEEEEEEEEEECEECC-TTSC-C--CCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EETTTEEEEECSTTCCEEE
T ss_pred             ccCCCeEEEecceEEEEEEC-CCCC-e--EEEecccccccccccccccccccccCCcEEE-ECCCCEEEEEECCCCcEEE
Confidence             1235666676666 77766 4442 2  110 00000000  000 00001123 4444 4688888888888887664

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.85  E-value=1.8  Score=38.77  Aligned_cols=30  Identities=10%  Similarity=-0.052  Sum_probs=24.4

Q ss_pred             CeEEEEecCCCcEEEEeCCCcccccccccC
Q 010784          403 YKIVTGGRDDLRINIWETDTGMLANSLLCN  432 (501)
Q Consensus       403 ~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~  432 (501)
                      +..+.+|+.+|++...|+.+|+.+.++...
T Consensus       111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A          111 DEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             CEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            455566679999999999999999888543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.57  E-value=18  Score=36.21  Aligned_cols=68  Identities=10%  Similarity=0.126  Sum_probs=40.1

Q ss_pred             CCCEEEEeeCCC--cEEEEeccCCCccccccceee---ccCCCCceeEEEEeecCCeEEEEEeC--C-----CeEEEEEC
Q 010784          221 SGKILASGGEDA--TVRLWSLSSSGKRGQQALKAT---LYGHEKPIKLMSVAGHKSFLLVTISK--D-----SKVRVWDT  288 (501)
Q Consensus       221 ~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~l~s~s~--d-----g~v~vwd~  288 (501)
                      ++.+++.|+.++  .+.+||..+..-    ..+..   ..........+.+....+.+++.|+.  +     ..+.+||+
T Consensus       500 ~~~iyv~GG~~~~~~v~~yd~~t~~W----~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~  575 (695)
T 2zwa_A          500 DGNVLILGGVTEGPAMLLYNVTEEIF----KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKY  575 (695)
T ss_dssp             TSCEEEECCBCSSCSEEEEETTTTEE----EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEE
T ss_pred             CCEEEEECCCCCCCCEEEEECCCCce----EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEc
Confidence            678888888655  688999887542    11111   11111122234444323677777775  2     45889999


Q ss_pred             CCCc
Q 010784          289 STSS  292 (501)
Q Consensus       289 ~~~~  292 (501)
                      .+.+
T Consensus       576 ~~~~  579 (695)
T 2zwa_A          576 DAEN  579 (695)
T ss_dssp             CTTC
T ss_pred             cCCc
Confidence            8876

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=89.44  E-value=12  Score=33.84  Aligned_cols=236  Identities=11%  Similarity=-0.012  Sum_probs=111.8

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec---ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL---SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-  186 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~---~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-  186 (501)
                      .....|++.++|.++++-.. +.|.+++.. +.+.+..+   .........|+++|+         |..++.+.++-.. 
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~-g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pd---------f~~~g~lyv~~~~~   97 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERP-GRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPE---------FPKKSWVYLYASYF   97 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETT-TEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTT---------TTTSCEEEEEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCC-CEEEEEeCC-CceEeeccceeecCCCceeeEEeCCC---------CCcCCEEEEEEecc
Confidence            44789999999997777655 788877733 32222211   122345788999982         1112444444332 


Q ss_pred             --C----CceEEec-CCc--------ee-eecc-CCCCceEEEEeeecCCCCCCEEEEeeC-------------CCcEEE
Q 010784          187 --D----HSIRLWW-KGS--------CQ-RCFK-GHNGPVSTLSDKLLGDGSGKILASGGE-------------DATVRL  236 (501)
Q Consensus       187 --d----g~i~vwd-~~~--------~~-~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~-------------dg~i~i  236 (501)
                        +    +.|..|+ .+.        .+ ..+. .....-..|+|.    ++|.+.++-+.             .|.|.-
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~----pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r  173 (354)
T 3a9g_A           98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG----PDGMLYITTGDAADPRLAQDLSSLAGKILR  173 (354)
T ss_dssp             CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC----TTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred             CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC----CCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence              2    4566665 221        11 1122 111123568885    78887776432             244555


Q ss_pred             EeccCCCcccc-c-cceeeccCCCCceeEEEEeecCCeEEEEEeCCC---eEEEEECCCCcccc------------ceec
Q 010784          237 WSLSSSGKRGQ-Q-ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS---KVRVWDTSTSSAVR------------SSCC  299 (501)
Q Consensus       237 wd~~~~~~~~~-~-~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg---~v~vwd~~~~~~~~------------~~~~  299 (501)
                      ++.+..-.... . .......++.. ...++|.+.++.++++-...+   .|.+..  .+....            ....
T Consensus       174 i~~dG~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p  250 (354)
T 3a9g_A          174 VDEEGRPPADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDP  250 (354)
T ss_dssp             ECTTSCCCTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCC
T ss_pred             EcCCCCCCCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCC
Confidence            55432100000 0 00111223433 357888874555555433221   233322  221000            0000


Q ss_pred             ccce-ecCCCceeeec--------CCCeEEEEeC--CcEEEEEcCCCc-eE--eee-ccCCCcEEEEEEcCCCcEEEEEc
Q 010784          300 VGMT-SVPGVPVDMKC--------HESMLYIASG--SSVVTIDLRTMQ-KV--MTP-AICKPILHSFSIMPSKSLICTGG  364 (501)
Q Consensus       300 ~~~~-~~~~~~~~~~~--------~~~~~~~~~~--~~i~~~d~~~~~-~~--~~~-~~~~~~v~~v~~~~~~~~l~~~~  364 (501)
                      .... .....+..+.+        ....++++.-  +.|..+++.... ..  ..+ ......+..+++.|||.++++..
T Consensus       251 ~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          251 VIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             SEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             EeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            0000 01122333333        2334555543  467777876532 21  222 22245688999999998777664

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=88.34  E-value=14  Score=33.23  Aligned_cols=239  Identities=11%  Similarity=0.020  Sum_probs=120.4

Q ss_pred             CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee----ccCCCCceeEEEEeec---CCeEEEEE-
Q 010784          206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT----LYGHEKPIKLMSVAGH---KSFLLVTI-  277 (501)
Q Consensus       206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~---~~~~l~s~-  277 (501)
                      -..-..|+|.    ++|.++++--..|.|++++...+..    ..+..    ..........|+++|+   ++.+.++- 
T Consensus        31 L~~P~~ia~~----pdG~llVter~~G~I~~v~~~~g~~----~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           31 LNSPWGLAPL----PGGDLLVSSRDEATITRVDAKTGRK----TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             CSSEEEEEEC----TTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CCCceEEEEc----CCCcEEEEEecCCEEEEEECCCCcE----eeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            3456788986    7888777765589999987654432    11211    1223456789999873   34444432 


Q ss_pred             -eCCCeEEEEECCCCc----cccceec-cccee--cCCCceeeecCCC-eEEEEeC---------------CcEEEEEcC
Q 010784          278 -SKDSKVRVWDTSTSS----AVRSSCC-VGMTS--VPGVPVDMKCHES-MLYIASG---------------SSVVTIDLR  333 (501)
Q Consensus       278 -s~dg~v~vwd~~~~~----~~~~~~~-~~~~~--~~~~~~~~~~~~~-~~~~~~~---------------~~i~~~d~~  333 (501)
                       ..++.|.-|......    .+..... .....  .....-.+.+.++ .++++.+               +.|.-++..
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence             245566666665421    1111111 11110  1111223444443 4556543               133333433


Q ss_pred             CC--------ceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCC------------CCCCCcccccCc
Q 010784          334 TM--------QKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDA------------VKPQPMAELDGH  391 (501)
Q Consensus       334 ~~--------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~------------~~~~~~~~~~~h  391 (501)
                      ..        .......+| .....++|+|+|.++++-. .+. =.|--+..+...            ....++..+..+
T Consensus       183 G~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~  261 (347)
T 3das_A          183 GEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD  261 (347)
T ss_dssp             SSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred             CCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC
Confidence            21        000111122 2346799999988777654 222 233333333221            001223333333


Q ss_pred             ccCeEEEEecCCeEEEEecCCCcEEEEeCCCccccc---ccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          392 VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLAN---SLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       392 ~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      ......++|....++.+.-..+.|....+.....+.   .+.    .+....+..++..|||.++++..
T Consensus       262 ~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l----~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          262 EASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFL----EGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEES----TTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEee----cCCCCCccEEEECCCCcEEEEEc
Confidence            345677888767666665566677666665443211   121    12245788999999998777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=85.68  E-value=22  Score=35.71  Aligned_cols=144  Identities=7%  Similarity=0.063  Sum_probs=71.1

Q ss_pred             cEEEEEcCCCceEeee-c-----cC-CCcEEEEEEcC-CCcEEEEEcCC------c-EEEEecCCCCCCCCCCCcccccC
Q 010784          326 SVVTIDLRTMQKVMTP-A-----IC-KPILHSFSIMP-SKSLICTGGIG------K-AMTWDIRRSQDAVKPQPMAELDG  390 (501)
Q Consensus       326 ~i~~~d~~~~~~~~~~-~-----~~-~~~v~~v~~~~-~~~~l~~~~~d------~-i~iwd~~~~~~~~~~~~~~~~~~  390 (501)
                      .+.+||..+.+-...- .     .. ...-.+++..+ ++++++.|+.+      . +.+||..+.+-    ..+..+..
T Consensus       413 ~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W----~~~~~~p~  488 (695)
T 2zwa_A          413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW----SMIKSLSH  488 (695)
T ss_dssp             CEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEE----EECCCCSB
T ss_pred             cEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcE----EECCCCCC
Confidence            5788888776543322 1     01 11112333333 77788887721      3 78899887431    11122211


Q ss_pred             cccCeEEEEecCCeEEEEecCCC--cEEEEeCCCcccccccccCCCCCCCcceeeeEeecc-ccEEEEeecCCC-----c
Q 010784          391 HVGSVTQLHMDPYKIVTGGRDDL--RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS-GCRIVTASYGEP-----G  462 (501)
Q Consensus       391 h~~~v~~l~~~~~~~l~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~s~~~d~~-----g  462 (501)
                      ....-..+.+..+++++.|+.++  .+.+||..+.+-...-...........-.++.+..+ +++++.||.+.+     .
T Consensus       489 ~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~  568 (695)
T 2zwa_A          489 TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSD  568 (695)
T ss_dssp             CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCC
T ss_pred             CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeC
Confidence            11122233333446666665544  699999987543221110000001112233455555 778888876323     4


Q ss_pred             eEEEeeccCCc
Q 010784          463 LLQFRDFSNAT  473 (501)
Q Consensus       463 ~i~~w~~~~~~  473 (501)
                      .+.+||+....
T Consensus       569 ~v~~yd~~~~~  579 (695)
T 2zwa_A          569 KAIIFKYDAEN  579 (695)
T ss_dssp             EEEEEEECTTC
T ss_pred             cEEEEEccCCc
Confidence            57788876655

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.57  E-value=16  Score=34.44  Aligned_cols=106  Identities=11%  Similarity=0.037  Sum_probs=58.9

Q ss_pred             CcEEEEEEcCCCc--EEEEEcCCcEEEEecCCCCCCCCCCCcccc----c-----CcccCeEEEEecCC-----eEEEEe
Q 010784          346 PILHSFSIMPSKS--LICTGGIGKAMTWDIRRSQDAVKPQPMAEL----D-----GHVGSVTQLHMDPY-----KIVTGG  409 (501)
Q Consensus       346 ~~v~~v~~~~~~~--~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~----~-----~h~~~v~~l~~~~~-----~~l~~g  409 (501)
                      .....|+|.|+|.  ++++-..+.|++++......   ..++..+    .     ........|+++|+     .++++-
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~---~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y   90 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF---KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY   90 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC---SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee---eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence            3457899999985  77666555599997542211   0111111    1     12457889999996     444443


Q ss_pred             cC--C----------CcEEEEeCCCc----------ccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          410 RD--D----------LRINIWETDTG----------MLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       410 s~--d----------g~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      +.  +          ..|.-|.+..+          +.+..+..   ......-..++|.|||.+.++.+
T Consensus        91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~---~~~~H~g~~l~fgpDG~LYv~~G  157 (463)
T 2wg3_C           91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE---LHRKHLGGQLLFGPDGFLYIILG  157 (463)
T ss_dssp             EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE---SSSSSCEEEEEECTTSCEEEEEC
T ss_pred             eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC---CCCcccCCcEeECCCCcEEEEeC
Confidence            32  1          14555665431          12222211   11223457899999998777765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=81.91  E-value=25  Score=30.47  Aligned_cols=224  Identities=12%  Similarity=0.091  Sum_probs=117.5

Q ss_pred             CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEE
Q 010784          207 GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVW  286 (501)
Q Consensus       207 ~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vw  286 (501)
                      ..|..++.     .....++. . ||.|..|-.....+..      ........|..++..  ....++. . ||.|..|
T Consensus        24 ~~i~~ia~-----G~~h~~~l-~-~G~v~~wG~n~~Gqlg------~p~~~~~~i~~ia~G--~~hs~~l-~-~G~v~~w   86 (282)
T 3qhy_B           24 SGVDAIAG-----GYFHGLAL-K-GGKVLGWGANLNGQLT------MPAATQSGVDAIAAG--NYHSLAL-K-DGEVIAW   86 (282)
T ss_dssp             SSCCEEEE-----CSSEEEEE-E-TTEEEEEECCSSSTTS------CCGGGGSCCCEEEEC--SSEEEEE-E-TTEEEEE
T ss_pred             CCCcEEEe-----CCCeEEEE-E-CCEEEEEeCCCCCCCC------CCccCCCCEEEEEeC--CCEEEEE-E-CCEEEEe
Confidence            35777775     33344444 5 9999999877654311      111112356666664  3444444 4 8999999


Q ss_pred             ECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC
Q 010784          287 DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG  366 (501)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d  366 (501)
                      -....-.+....     .....+..+.......++.+.+.+..|-......+-........|..++...+..+++  .++
T Consensus        87 G~n~~Gqlg~P~-----~~~~~v~~ia~G~~hs~al~~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~~G  159 (282)
T 3qhy_B           87 GGNEDGQTTVPA-----EARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--KNG  159 (282)
T ss_dssp             ECCTTSTTCCCG-----GGSSSEEEEEEETTEEEEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--ETT
T ss_pred             eCCCCCCCCCCc-----ccCCCeEEEECcCCEEEEEeCCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--ECC
Confidence            866432221101     1123455666655555444466888887654322211111234577777654433333  244


Q ss_pred             cEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEe
Q 010784          367 KAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAM  446 (501)
Q Consensus       367 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  446 (501)
                      .++.|-......+  ..+...    ...|..++......++.  .||.|..|-....-.+..-     ......|..++.
T Consensus       160 ~v~~wG~n~~gql--g~p~~~----~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg~p-----~~~~~~v~~i~~  226 (282)
T 3qhy_B          160 GVIAWGDNYFGQT--TVPAEA----QSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVP-----TEALSGVSAIAS  226 (282)
T ss_dssp             EEEEEECCTTSTT--SCCGGG----GSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCC-----GGGGSSCCEEEE
T ss_pred             EEEEecCCCCCCC--CCceec----CCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCCCC-----cccCCCceEEEc
Confidence            4999977654433  111111    35688888777744444  4899999976542222111     111223455544


Q ss_pred             eccccEEEEeecCCCceEEEeeccCC
Q 010784          447 AVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       447 s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      .......++   |  |.|+.|-....
T Consensus       227 G~~h~~al~---~--g~v~~wG~n~~  247 (282)
T 3qhy_B          227 GEWYSLALK---N--GKVIAWGSSRT  247 (282)
T ss_dssp             CSSCEEEEE---T--TEEEEESTTCC
T ss_pred             CCCEEEEEE---C--CEEEEecCCCC
Confidence            333333333   3  77777765543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=80.58  E-value=28  Score=30.16  Aligned_cols=221  Identities=12%  Similarity=0.139  Sum_probs=119.3

Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED  231 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d  231 (501)
                      .|..++.-.              ...++. . ||.|..|-   .+++-... .....|..++.     .....++. . |
T Consensus        25 ~i~~ia~G~--------------~h~~~l-~-~G~v~~wG~n~~Gqlg~p~-~~~~~i~~ia~-----G~~hs~~l-~-~   80 (282)
T 3qhy_B           25 GVDAIAGGY--------------FHGLAL-K-GGKVLGWGANLNGQLTMPA-ATQSGVDAIAA-----GNYHSLAL-K-D   80 (282)
T ss_dssp             SCCEEEECS--------------SEEEEE-E-TTEEEEEECCSSSTTSCCG-GGGSCCCEEEE-----CSSEEEEE-E-T
T ss_pred             CCcEEEeCC--------------CeEEEE-E-CCEEEEEeCCCCCCCCCCc-cCCCCEEEEEe-----CCCEEEEE-E-C
Confidence            577777643              233444 4 99999994   22221111 12336777775     34445554 4 9


Q ss_pred             CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee
Q 010784          232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD  311 (501)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  311 (501)
                      |.|..|-.....+...      ...-...|..|+..  .. ..+.-. ||.|..|-....-.+..     .......+..
T Consensus        81 G~v~~wG~n~~Gqlg~------P~~~~~~v~~ia~G--~~-hs~al~-~G~v~~wG~n~~gqlg~-----~~~~~~~i~~  145 (282)
T 3qhy_B           81 GEVIAWGGNEDGQTTV------PAEARSGVDAIAAG--AW-ASYALK-DGKVIAWGDDSDGQTTV-----PAEAQSGVTA  145 (282)
T ss_dssp             TEEEEEECCTTSTTCC------CGGGSSSEEEEEEE--TT-EEEEEE-TTEEEEEECCTTSTTSC-----CGGGGSSEEE
T ss_pred             CEEEEeeCCCCCCCCC------CcccCCCeEEEECc--CC-EEEEEe-CCeEEEecCCCCCcCCC-----CccCCCCeEE
Confidence            9999998776543111      11112467777665  33 333344 99999997654322110     0012233555


Q ss_pred             eecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCc
Q 010784          312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH  391 (501)
Q Consensus       312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h  391 (501)
                      +.......++.+.+.+..|-......+..-..-...|..++...+.. ++. .++.++.|-......+  ..+...    
T Consensus       146 i~~G~~~~~~l~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gql--g~p~~~----  217 (282)
T 3qhy_B          146 LDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQT--TVPTEA----  217 (282)
T ss_dssp             EEECSSEEEEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTT--CCCGGG----
T ss_pred             EEcccCEEEEEECCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCC--CCCccc----
Confidence            55555555555667888886654322211111135677777654433 333 4333999977654433  222222    


Q ss_pred             ccCeEEEEecCCeEEEEecCCCcEEEEeCCCcc
Q 010784          392 VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGM  424 (501)
Q Consensus       392 ~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~  424 (501)
                      ...|..++......++. . ||.|..|-.....
T Consensus       218 ~~~v~~i~~G~~h~~al-~-~g~v~~wG~n~~g  248 (282)
T 3qhy_B          218 LSGVSAIASGEWYSLAL-K-NGKVIAWGSSRTA  248 (282)
T ss_dssp             GSSCCEEEECSSCEEEE-E-TTEEEEESTTCCC
T ss_pred             CCCceEEEcCCCEEEEE-E-CCEEEEecCCCCc
Confidence            23577787766644444 2 8999999765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	501
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.7 bits (161), Expect = 1e-12
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 20/142 (14%)

Query: 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGH 205
           R T + H++ I  +  FP               N   T S D + RL+   + Q      
Sbjct: 219 RQTFTGHESDINAICFFP-------------NGNAFATGSDDATCRLFDLRADQELMTYS 265

Query: 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS 265
           +  +      +    SG++L +G +D    +W                L GH+  +  + 
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK------ADRAGVLAGHDNRVSCLG 319

Query: 266 VAGHKSFLLVTISKDSKVRVWD 287
           V       + T S DS +++W+
Sbjct: 320 VT-DDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.7 bits (122), Expect = 8e-08
 Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 18/172 (10%)

Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
               F  H   +          + V+ +CD S +LW   +G C++ F GH   ++ +   
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC-- 233

Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS-FLL 274
                +G   A+G +DAT RL+ L +  +                  + SV+  KS  LL
Sbjct: 234 --FFPNGNAFATGSDDATCRLFDLRADQELMTY------SHDNIICGITSVSFSKSGRLL 285

Query: 275 VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS 326
           +    D    VWD   +          +         +   +  + +A+GS 
Sbjct: 286 LAGYDDFNCNVWDALKADRAGV-----LAGHDNRVSCLGVTDDGMAVATGSW 332

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 27/244 (11%), Positives = 66/244 (27%), Gaps = 21/244 (8%)

Query: 171 RSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE 230
           R          +T++ D   R+  +   +R  +GH   +  +          ++L S  +
Sbjct: 22  RKACADATLSQITNNIDPVGRIQMR--TRRTLRGHLAKIYAMH----WGTDSRLLVSASQ 75

Query: 231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS-KVRVWDTS 289
           D  + +W   +            +      +   + A   +++      +   +    T 
Sbjct: 76  DGKLIIWDSYT------TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129

Query: 290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH 349
             +   S    G T        +  ++ +      +  +       Q          ++ 
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189

Query: 350 SFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP--YKIVT 407
                 ++  +       A  WD+R      +        GH   +  +   P      T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAICFFPNGNAFAT 243

Query: 408 GGRD 411
           G  D
Sbjct: 244 GSDD 247

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 46/317 (14%), Positives = 91/317 (28%), Gaps = 36/317 (11%)

Query: 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFK 203
           R TL  H A+I  M                    +LV++S D  + +W     +      
Sbjct: 48  RRTLRGHLAKIYAMHWGT-------------DSRLLVSASQDGKLIIWDSYTTNKVHAIP 94

Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263
             +  V T +       SG  +A GG D    +++L +     + + +   +        
Sbjct: 95  LRSSWVMTCAY----APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150

Query: 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS 323
                         +           T++    +  V                  +  A 
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS------LSLAPDTRLFVSGAC 204

Query: 324 GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQ 383
            +S    D+R      T    +  +++    P+ +   TG           R+   +   
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264

Query: 384 PMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGC 443
               +   + SV+        ++ G  DD   N+W+      A  L  +           
Sbjct: 265 SHDNIICGITSVS-FSKSGRLLLAGY-DDFNCNVWDALKADRAGVLAGH-------DNRV 315

Query: 444 SAMAVS--GCRIVTASY 458
           S + V+  G  + T S+
Sbjct: 316 SCLGVTDDGMAVATGSW 332

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (155), Expect = 5e-12
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 21/169 (12%)

Query: 128 GSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEP-------QRTENV 180
            S+ Q +++   ++    +A L +H+  + C+   P    S              +    
Sbjct: 161 CSNDQTVRVWV-VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 219

Query: 181 LVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238
           L++ S D +I++W    G C     GH+  V  +         GK + S  +D T+R+W 
Sbjct: 220 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL----FHSGGKFILSCADDKTLRVWD 275

Query: 239 LSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
             +      +    TL  HE  +  +       ++ VT S D  V+VW+
Sbjct: 276 YKN------KRCMKTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 8e-11
 Identities = 54/335 (16%), Positives = 100/335 (29%), Gaps = 88/335 (26%)

Query: 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFK 203
           +  LS H++ +T +   P               +V+V++S D +I++W    G  +R  K
Sbjct: 10  KYALSGHRSPVTRVIFHP-------------VFSVMVSASEDATIKVWDYETGDFERTLK 56

Query: 204 GHNGPVSTL--------------------------------------SDKLLGDGSGKIL 225
           GH   V  +                                         +    +G  +
Sbjct: 57  GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 116

Query: 226 ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRV 285
            S   D T+++W + +           T  GH + ++++        L+ + S D  VRV
Sbjct: 117 VSASRDKTIKMWEVQT------GYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRV 169

Query: 286 WDTSTSSAVRS----------------SCCVGMTSVPGVPVDMKCHESMLYIASGS--SV 327
           W  +T                      S    ++   G             ++     ++
Sbjct: 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 229

Query: 328 VTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI-GKAMTWDIRRSQDAVKPQPMA 386
              D+ T   +MT       +           I +         WD +        + M 
Sbjct: 230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK------NKRCMK 283

Query: 387 ELDGHVGSVTQLHMDP--YKIVTGGRDDLRINIWE 419
            L+ H   VT L        +VTG  D   + +WE
Sbjct: 284 TLNAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 9e-10
 Identities = 37/208 (17%), Positives = 79/208 (37%), Gaps = 30/208 (14%)

Query: 137 DNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKG 196
           D+ +S S  +           C++ F  H   +    P +   ++ + S D ++R+W   
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173

Query: 197 S--CQRCFKGHNGPVSTLS----------------DKLLGDGSGKILASGGEDATVRLWS 238
           +  C+   + H   V  +S                +       G  L SG  D T+++W 
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233

Query: 239 LSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC 298
           +S+           TL GH+  ++ +       F+ ++ + D  +RVWD      +++  
Sbjct: 234 VST------GMCLMTLVGHDNWVRGVLFHSGGKFI-LSCADDKTLRVWDYKNKRCMKT-- 284

Query: 299 CVGMTSVPGVPVDMKCHESMLYIASGSS 326
              + +       +  H++  Y+ +GS 
Sbjct: 285 ---LNAHEHFVTSLDFHKTAPYVVTGSV 309

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 30/211 (14%), Positives = 61/211 (28%), Gaps = 31/211 (14%)

Query: 37  LQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQ- 95
           + ++           H    + V      +    +    +  TVRV         A L+ 
Sbjct: 127 MWEVQTGYCVKTFTGH---REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 96  -------FKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRAT 148
                    +         S A   +         F   GS  + IK+ +  +      T
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM-T 242

Query: 149 LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHN 206
           L  H   +  +                     +++ + D ++R+W      C +    H 
Sbjct: 243 LVGHDNWVRGVLFHS-------------GGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 289

Query: 207 GPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
             V++L        +   + +G  D TV++W
Sbjct: 290 HFVTSLD----FHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 40/296 (13%), Positives = 89/296 (30%), Gaps = 36/296 (12%)

Query: 195 KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254
           +   +    GH  PV+ +           ++ S  EDAT+++W   +         + TL
Sbjct: 6   RPPEKYALSGHRSPVTRVI----FHPVFSVMVSASEDATIKVWDYET------GDFERTL 55

Query: 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKC 314
            GH   ++ +S            S  + + +               G          M  
Sbjct: 56  KGHTDSVQDISFDHSGKL---LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 112

Query: 315 HESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIR 374
            + ++  +   ++   +++T   V T    +  +         +LI +    + +   + 
Sbjct: 113 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172

Query: 375 RSQDAVK----------------PQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIW 418
            +++                       + +    GS T+    P   +  G  D  I +W
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 232

Query: 419 ETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474
           +  TGM   +L+ +             +          S  +   L+  D+ N  C
Sbjct: 233 DVSTGMCLMTLVGH-------DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 36/227 (15%), Positives = 66/227 (29%), Gaps = 26/227 (11%)

Query: 195 KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254
           +    +  KGH+  V T          G  + SG +D T+++WS  +           TL
Sbjct: 5   ELKSPKVLKGHDDHVITCLQF-----CGNRIVSGSDDNTLKVWSAVT------GKCLRTL 53

Query: 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKC 314
            GH   +    +  +           S          +A    C   +         M  
Sbjct: 54  VGHTGGVWSSQMRDNIII--------SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 105

Query: 315 HESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIR 374
           HE  +   S  + + +      + +   +             + ++          WD  
Sbjct: 106 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 165

Query: 375 RSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETD 421
                     +  L GH   V  L  D   +V+G  D   I +W+ +
Sbjct: 166 T------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT-SIRVWDVE 205

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 6e-09
 Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 14/178 (7%)

Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDK 215
              L  L   +      Q     +V+ S D SIR+W    G+C     GH    S +   
Sbjct: 167 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME-- 224

Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
                   IL SG  D+TV++W + +               H+  +  +    +    ++
Sbjct: 225 ----LKDNILVSGNADSTVKIWDIKTGQCLQTLQGP---NKHQSAVTCLQFNKN---FVI 274

Query: 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR 333
           T S D  V++WD  T   +R+   +      GV   ++   + L  A GS   T + +
Sbjct: 275 TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 332

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 9e-07
 Identities = 48/309 (15%), Positives = 98/309 (31%), Gaps = 42/309 (13%)

Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLS----------------------- 213
           N +V+ S D+++++W    G C R   GH G V +                         
Sbjct: 28  NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG 87

Query: 214 --DKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS 271
                L   +  +      +  V   S  ++ +         L+     +  +    +  
Sbjct: 88  ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 147

Query: 272 FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS---SVV 328
             +V+ + D  V+VWD  T + + +                      +++ SGS   S+ 
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNR-------VYSLQFDGIHVVSGSLDTSIR 200

Query: 329 TIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAEL 388
             D+ T   + T    + +     +  +  L+          WDI+  Q     Q     
Sbjct: 201 VWDVETGNCIHTLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGP--- 256

Query: 389 DGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV 448
           + H  +VT L  +   ++T   DD  + +W+  TG    +L+      +         + 
Sbjct: 257 NKHQSAVTCLQFNKNFVITSS-DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315

Query: 449 SGCRIVTAS 457
           +       S
Sbjct: 316 TKLVCAVGS 324

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.2 bits (131), Expect = 7e-09
 Identities = 27/222 (12%), Positives = 51/222 (22%), Gaps = 23/222 (10%)

Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
               +A    +  V ++  S      +      L  H   +  +  A   S  +VT   D
Sbjct: 18  DRTQIAICPNNHEVHIYEKSG----NKWVQVHELKEHNGQVTGVDWA-PDSNRIVTCGTD 72

Query: 281 SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK--- 337
               VW     +   +   + +             +     +    +             
Sbjct: 73  RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132

Query: 338 --VMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQP----------- 384
              +   I   +L       S  L       K   +     +   +P P           
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 192

Query: 385 -MAELDGHVGSVTQL-HMDPYKIVTGGRDDLRINIWETDTGM 424
            M E     G V  +        V     D  + + + D  M
Sbjct: 193 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 234

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 23/167 (13%), Positives = 45/167 (26%), Gaps = 16/167 (9%)

Query: 129 SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188
             +      + ++   + +T+    A           ET    +    TE+ LV +  D 
Sbjct: 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDC 264

Query: 189 SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG 246
              L+     + +  F G            L                 +     +S +  
Sbjct: 265 FPVLFTYDSAAGKLSFGGR-----------LDVPKQSSQRGLTARERFQNLDKKASSEGS 313

Query: 247 QQALKATLYGHEKPIKLMSV---AGHKSFLLVTISKDSKVRVWDTST 290
             A       H+  +  +SV      K     T   D  + +WD  +
Sbjct: 314 AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 34/155 (21%)

Query: 148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW----------WKGS 197
           + + HK  +  +                     +V+ S D S++LW           K  
Sbjct: 249 SGTGHKDSVYSVVFTR-------------DGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 198 CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257
                +            +    + + + SG +D  V  W   S            L GH
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------GNPLLMLQGH 349

Query: 258 EKPIKLMSVAGHKSF-----LLVTISKDSKVRVWD 287
              +  ++VA   S      +  T S D K R+W 
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 7e-08
 Identities = 53/324 (16%), Positives = 108/324 (33%), Gaps = 29/324 (8%)

Query: 70  QVLVSGSLPTVRVREAYLARRIALLQFKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGS 129
           + L +G   T +V        +A L        D    + +      L   +  FS  G 
Sbjct: 75  EYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 134

Query: 130 SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS 189
                      + +  R            + +   HE  ++  +   + + LV+ S D +
Sbjct: 135 --------FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186

Query: 190 IRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ-Q 248
           +R+W                  ++   +  G GK +A+G  D  VR+W   +     +  
Sbjct: 187 VRIWD--LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244

Query: 249 ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV 308
           +   +  GH+  +  +         +V+ S D  V++W+   ++    S      +    
Sbjct: 245 SENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 309 PVDMKCHESML-------YIASGS---SVVTIDLRTMQKVMT------PAICKPILHSFS 352
            +  K     +       YI SGS    V+  D ++   ++         I   + +  S
Sbjct: 304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS 363

Query: 353 IMPSKSLICTGGI-GKAMTWDIRR 375
           + P  ++  TG    KA  W  ++
Sbjct: 364 LGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 19/175 (10%)

Query: 179 NVLVTSSCDHSIRLWWKGSCQRC---------FKGHNGPVSTLSDKLLGDGSGKILASGG 229
             +   S D ++R+W   +               GH   V ++         G+ + SG 
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF----TRDGQSVVSGS 273

Query: 230 EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSF-----LLVTISKDSKVR 284
            D +V+LW+L ++  +       +       I         +       +++ SKD  V 
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333

Query: 285 VWDTSTSSAVRS-SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV 338
            WD  + + +              V             A+GS      +   +K+
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 6e-08
 Identities = 11/106 (10%), Positives = 31/106 (29%), Gaps = 12/106 (11%)

Query: 197 SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256
           +     K H+  + ++S             S   D  +++W          +    + + 
Sbjct: 5   ATANAGKAHDADIFSVS------ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV 58

Query: 257 HEKPIKLMSVA------GHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           H+  +  + V         +  L+ T S    +  +  +     + 
Sbjct: 59  HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 104

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 38/335 (11%), Positives = 83/335 (24%), Gaps = 55/335 (16%)

Query: 177 TENVLVTSSCDHSIRLW------WKGSCQRCFKGHNGP-----VSTLSDKLLGDGSGKIL 225
             +  V+ S D  +++W       +    + +           V  L           ++
Sbjct: 23  CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82

Query: 226 ASGGEDATVRLWSLSSSG--KRGQQALKATLYGHEKPIKLMSVAGHKSF------LLVTI 277
           A+      +  + ++     K+        L    K     ++    S        LV  
Sbjct: 83  ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 142

Query: 278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML------------YIASGS 325
                  +W     +   +S  +  +    +   ++   +               IA+G 
Sbjct: 143 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGF 202

Query: 326 SVVTIDL---------RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKA-------- 368
           +  T+ +            +   +       + S    P  SL+       +        
Sbjct: 203 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 262

Query: 369 ---MTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM 424
                     S      Q       H   V  L  +   + +     D ++  W+  T  
Sbjct: 263 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322

Query: 425 LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG 459
              +L  +     DI      +AV       A  G
Sbjct: 323 RITTLNMH---CDDIEIEEDILAVDEHGDSLAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 39/374 (10%), Positives = 84/374 (22%), Gaps = 53/374 (14%)

Query: 108 SVAKPHDH----ILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFP 163
           +  K HD     +   N+   S   S    +K+ +             +   +    L  
Sbjct: 8   NAGKAHDADIFSVSACNSFTVS--CSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 164 LHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGS 221
           + +             ++ T+S    +  +   +    +        +     K     +
Sbjct: 66  V-DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 222 -----------GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270
                         L +     T  +W                    E    + S     
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 271 SF----------LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV---DMKCHES 317
            F          L+ T   +  V++ + ST   + +             +         S
Sbjct: 185 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 318 MLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQ 377
           +L IA  S+          +         +    S         +  +      D   + 
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 378 ------------DAVKPQPMAELDGHVGSVTQLHM------DPYKIVTGGRDDLRI--NI 417
                       D    + +  L+ H   +               +   G  D++     
Sbjct: 305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 364

Query: 418 WETDTGMLANSLLC 431
           W +  G   N  LC
Sbjct: 365 WRSGMGADLNESLC 378

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 21/123 (17%), Positives = 32/123 (26%), Gaps = 2/123 (1%)

Query: 148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGH 205
           +LS              H + +       +   L ++  D  +R W             H
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS 265
              +    D L  D  G  LA  G      L     SG              ++ I+   
Sbjct: 331 CDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390

Query: 266 VAG 268
            AG
Sbjct: 391 EAG 393

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM 335
           + S D  ++VW+TST   VR+              D           S +++   D+   
Sbjct: 153 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS----SDNTIRLWDIECG 208

Query: 336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKP---QPMAELDGHV 392
             +      + ++        + ++     GK   WD+  + D   P     +  L  H 
Sbjct: 209 ACLRVLEGHEELVRCIRFDNKR-IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267

Query: 393 GSVTQLHMDPYKIVTGGRDDLRINIWE 419
           G V +L  D ++IV+   DD  I IW+
Sbjct: 268 GRVFRLQFDEFQIVSSSHDD-TILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 29/223 (13%), Positives = 62/223 (27%), Gaps = 24/223 (10%)

Query: 200 RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259
            C    +  V  L          + + SG  D T+++W  ++         K  L GH  
Sbjct: 9   HCRSETSKGVYCLQ------YDDQKIVSGLRDNTIKIWDKNT------LECKRILTGHTG 56

Query: 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML 319
            +  +            I+  S   V     ++    +  +                   
Sbjct: 57  SVLCLQYDERV-----IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTC 111

Query: 320 YIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDA 379
                 +V  +   T   +    +      +      K ++   G      W+       
Sbjct: 112 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS----- 166

Query: 380 VKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDT 422
              + +  L+GH   +  L      +V+G  D+  I +W+ + 
Sbjct: 167 -TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDN-TIRLWDIEC 207

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.4 bits (118), Expect = 2e-07
 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 11/123 (8%)

Query: 196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255
           GS  +   GHN  ++ LS        GK L S   +  +  W +S+       + +    
Sbjct: 2   GSIDQVRYGHNKAITALS----SSADGKTLFSADAEGHINSWDIST-----GISNRVFPD 52

Query: 256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH 315
            H   I    +       L T+S D  ++V     S    S       S   + + +   
Sbjct: 53  VHATMI--TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 110

Query: 316 ESM 318
             +
Sbjct: 111 GDI 113

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 3e-04
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 182 VTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSL 239
            T S D+S+ +W   K S           +S+++  +  +     + S G+D+ ++ W++
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFWNV 297

Query: 240 S 240
            
Sbjct: 298 P 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 184 SSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG 243
                 I      + +          +     +        LA+G  D +V +W+++   
Sbjct: 198 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK-- 255

Query: 244 KRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS 289
                        H     + SV       +V+  +DS ++ W+  
Sbjct: 256 --PSDHPIIIKGAHAMSS-VNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 8e-07
 Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 186 CDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR 245
                    K      +   +          L     +  A+ G DAT+R+W +++    
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT---- 282

Query: 246 GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
            +   K TL   +   + + V    +  ++++S D  +  ++
Sbjct: 283 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 6e-06
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
               T   D +IR+W      C + +      +      ++  G+G+I  S   D T+  
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI-ISLSLDGTLNF 322

Query: 237 WSL 239
           + L
Sbjct: 323 YEL 325

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 15/227 (6%)

Query: 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258
           +   +GH   V T             + +G +D  +R++   +      +     L GH+
Sbjct: 5   RTTLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSIN------KKFLLQLSGHD 53

Query: 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM 318
             +   ++      +LV+ S D  VRVWD               T      V+ K  + +
Sbjct: 54  GGV--WALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 111

Query: 319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQD 378
           +  +  +++    L     V  P   +   +       +      G+ +     +R    
Sbjct: 112 VTGSRDNTLHVWKLPKESSV--PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 169

Query: 379 AVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGML 425
                     D  +       M    I++G  D +   I++ +    
Sbjct: 170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 42/359 (11%), Positives = 110/359 (30%), Gaps = 32/359 (8%)

Query: 119 DNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE 178
           ++N + +  G+  + I++ + +++ +    LS H   +  ++                  
Sbjct: 22  EDNYVIT--GADDKMIRVYDSINKKFLL-QLSGHDGGVWALKYAH--------------G 64

Query: 179 NVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238
            +LV+ S D ++R+W                +     ++   + K + +G  D T+ +W 
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 239 LSS------SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292
           L         G+     L             +      S   V+   +  V     +T  
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 184

Query: 293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFS 352
               +    +  + G    +             S        +  +    +   +    +
Sbjct: 185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244

Query: 353 IMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD 412
           ++    L     +  A    IR        +  +    ++ ++T  ++    +V+G   +
Sbjct: 245 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--E 302

Query: 413 LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQFRDFS 470
            + NI+   +G L ++ +         +    ++   G   +          L+  DFS
Sbjct: 303 NQFNIYNLRSGKLVHANILKD------ADQIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (109), Expect = 3e-06
 Identities = 11/95 (11%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 193 WWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA 252
             + + +                   +    ++A+G  D  + ++S+    K  +     
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK----- 252

Query: 253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
            L  H+  +   ++       LV+   D+ ++ W+
Sbjct: 253 ALNAHKDGV--NNLLWETPSTLVSSGADACIKRWN 285

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 39/281 (13%), Positives = 73/281 (25%), Gaps = 19/281 (6%)

Query: 184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS 241
                S+        +    +  H+   +          SG   ASG     VR+W    
Sbjct: 34  YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAK----TSPSGYYCASGDVHGNVRIW---- 85

Query: 242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301
              +    LK T+     P+K +S       +        +        +     +    
Sbjct: 86  DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ 145

Query: 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLIC 361
             ++  V         ++  +  ++V   +    +   T       +HS    P  SL  
Sbjct: 146 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA 205

Query: 362 TGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM----DPYKIVTGGRDDLRINI 417
           + G    +                  L     S +   +    D  KI +   D   I I
Sbjct: 206 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-TIKI 264

Query: 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458
           W   T      +    P    I      +  +   +V+ S 
Sbjct: 265 WNVATL----KVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 10/96 (10%), Positives = 24/96 (25%), Gaps = 5/96 (5%)

Query: 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRC 201
           Y     +              H  S+F          + ++S D +I++W       ++ 
Sbjct: 216 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 275

Query: 202 FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
                              + + L S   +  +   
Sbjct: 276 IPVGTRIEDQQLG---IIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
            G  +AS   D T+++W++++      +  K    G     + + +   K   LV+IS +
Sbjct: 249 DGTKIASASADKTIKIWNVATL-----KVEKTIPVGTRIEDQQLGIIWTKQA-LVSISAN 302

Query: 281 SKVRVWD 287
             +   +
Sbjct: 303 GFINFVN 309

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 20/269 (7%), Positives = 64/269 (23%), Gaps = 20/269 (7%)

Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
           S  +L     D ++ ++      K            ++ P+   +   +    +   +  
Sbjct: 22  SKSLLLITSWDGSLTVYKFDIQAKNVD---LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ 78

Query: 281 SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMT 340
            ++   D   S + ++                   + +   +    +  ID R     + 
Sbjct: 79  GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLI-AASWDGLIEVIDPRNYGDGVI 137

Query: 341 PAICKPILHSFSIMPSKSLICTGGI-------GKAMTWDIRRSQDAVKPQPMAELDGHVG 393
                   ++       ++              +   + +   +D       + L   + 
Sbjct: 138 AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR 197

Query: 394 SVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG--------CSA 445
            V  L  +         D  R+ +   D      +    +                  ++
Sbjct: 198 DVALLPKEQEGYACSSIDG-RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 446 MAVSGCRIVTASYGEPGLLQFRDFSNATC 474
           +  S       + G  G++   +      
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKK 285

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 36/330 (10%), Positives = 82/330 (24%), Gaps = 44/330 (13%)

Query: 148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW-----WKGSCQRCF 202
                K  I+ +++ P             ++++L+ +S D S+ ++      K       
Sbjct: 6   IEQAPKDYISDIKIIP-------------SKSLLLITSWDGSLTVYKFDIQAKNVDLLQS 52

Query: 203 KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262
             +  P+   +     D +   +  G     +    L  S             G  +  K
Sbjct: 53  LRYKHPLLCCN---FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK 109

Query: 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA 322
                   +     I         D   +    +S          +         ++   
Sbjct: 110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSRLIVGM 167

Query: 323 SGSSVVTIDLRTMQKVMTPAICKPILHSFSIM----PSKSLICTGGI-GKAMTWDIRRSQ 377
           + S V    L   +          + +    +      +       I G+          
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 378 DAVK---------PQPMAELDGHVGSVTQLHMDP-YKIVTGGRDDLRINIWETDTGMLAN 427
           D             +   +       V  +   P +K +     D  I+ W   T     
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---- 283

Query: 428 SLLCNYPEEADISTGCSAMAVSGCRIVTAS 457
             + N+ +  + S     +A S   +  A+
Sbjct: 284 KKIKNFAKFNEDS--VVKIACSDNILCLAT 311

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 5/89 (5%)

Query: 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFK-GHNGPVS 210
                       LHE+ +   +        V++  D+ +  W        F+   +  V 
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL 310

Query: 211 TLSDKLLGDGSGKILASGGEDATVRLWSL 239
           +           K + +G  D    ++ +
Sbjct: 311 SCD----ISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 8/102 (7%)

Query: 186 CDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR 245
                         +  K       +    L     GK   S G+D  +  W        
Sbjct: 241 VGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300

Query: 246 GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
            Q             +    ++    + +VT S D K  V++
Sbjct: 301 FQ-------SKESSSVLSCDISVDDKY-IVTGSGDKKATVYE 334

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 9/50 (18%), Positives = 25/50 (50%)

Query: 20 IADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWP 69
          I+ L ++   +    L  +D+   A +C+ ++ +A  + +W+   +E+  
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGI 68

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 13/159 (8%), Positives = 38/159 (23%), Gaps = 18/159 (11%)

Query: 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC------DHSIRLWWKGS 197
             R  L+     ++   + PL   S   ++                     S  +     
Sbjct: 205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG 264

Query: 198 CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257
             R        +   S  + G+          E   +  + +              +   
Sbjct: 265 DYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLLKYDVK----------TRKVTEV 313

Query: 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
           +  +  + ++  +  + +    D K+  +        R+
Sbjct: 314 KNNLTDLRLSADRKTV-MVRKDDGKIYTFPLEKPEDERT 351

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 20 IADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSD-SVWQRLFREQW 68
          I  L  +        L  +DI N     + +  +     S+W++L   + 
Sbjct: 6  ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	501
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.69
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.56
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.44
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.39
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.34
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.3
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.12
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.0
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.95
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.94
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.93
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.92
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.92
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.91
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.9
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.86
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.85
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.68
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.65
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.62
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.32
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.27
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.01
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.98
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.45
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.23
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.23
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.05
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.02
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.85
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.85
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.84
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.54
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.47
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.44
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.41
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.37
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.1
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.02
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.94
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.67
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.33
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.75
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.72
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	93.71
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.76
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.0
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.3
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.07
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.09
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	89.26
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	87.16
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	86.39
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	86.12
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.34

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-41  Score=314.94  Aligned_cols=280  Identities=15%  Similarity=0.184  Sum_probs=241.9

Q ss_pred             EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccc----cceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY----YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~----~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      ....|..+|+|++|+++|.+||+|+ |+.|+|||+.++..    ......+|.+.|.+++|+|             ++++
T Consensus        46 ~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~-------------dg~~  111 (337)
T d1gxra_          46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-------------DGCT  111 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-------------TSSE
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC-------------CCCE
Confidence            3446888999999999999999998 79999999876421    1223458999999999999             8999


Q ss_pred             EEEeeCCCceEEec----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784          181 LVTSSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       181 l~s~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      |++|+.||+|++||    .......+..|...+.++.|+    +++.++++++.|+.|++|++.++.      +......
T Consensus       112 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~~~d~~i~~~~~~~~~------~~~~~~~  181 (337)
T d1gxra_         112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS----PDSKVCFSCCSDGNIAVWDLHNQT------LVRQFQG  181 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC----TTSSEEEEEETTSCEEEEETTTTE------EEEEECC
T ss_pred             EEEeecccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccc------ccccccc
Confidence            99999999999998    334566778899999999997    899999999999999999999876      4677788


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      |...|.+++|++ ++..+++++.|+.|++||+++++.+.                                         
T Consensus       182 ~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~-----------------------------------------  219 (337)
T d1gxra_         182 HTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQ-----------------------------------------  219 (337)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEE-----------------------------------------
T ss_pred             cccccccccccc-cccccccccccccccccccccceeec-----------------------------------------
Confidence            999999999997 77899999999999999998874321                                         


Q ss_pred             eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCc
Q 010784          337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLR  414 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~  414 (501)
                         . ..|...|.+++|+|+++++++|+.++ +++||+++.+.       .....|...|++++|+|+ ++|++|+.||.
T Consensus       220 ---~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~  288 (337)
T d1gxra_         220 ---Q-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-------YQLHLHESCVLSLKFAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             ---E-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-------EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ---c-cccccceEEEEEcccccccceecccccccccccccccc-------ccccccccccceEEECCCCCEEEEEeCCCe
Confidence               1 12678899999999999999999888 99999998653       455678999999999999 88899999999


Q ss_pred             EEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          415 INIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       415 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      |++||+.+++.+..+      .|...|.+++|+|++++|++|+  .||.|++||+
T Consensus       289 i~iwd~~~~~~~~~~------~~~~~v~~~~~s~d~~~l~t~s--~D~~I~vWdl  335 (337)
T d1gxra_         289 LNAWRTPYGASIFQS------KESSSVLSCDISVDDKYIVTGS--GDKKATVYEV  335 (337)
T ss_dssp             EEEEETTTCCEEEEE------ECSSCEEEEEECTTSCEEEEEE--TTSCEEEEEE
T ss_pred             EEEEECCCCCEEEEc------cCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEEE
Confidence            999999999988776      3567899999999999999999  6699999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-41  Score=307.56  Aligned_cols=311  Identities=17%  Similarity=0.236  Sum_probs=251.5

Q ss_pred             ccccCCeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCC
Q 010784           96 FKFVDPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQ  175 (501)
Q Consensus        96 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~  175 (501)
                      |....+.+..+.+|..+|++|+|+|++.+|++|+.|+.|+|||+.++ +.+.++.+|.+.|.+++|+|            
T Consensus         3 w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~h~~~V~~~~~~~------------   69 (317)
T d1vyhc1           3 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDH------------   69 (317)
T ss_dssp             CCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCCSSCEEEEEECT------------
T ss_pred             cCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCCCcEEEEeeec------------
Confidence            44445566778899999999999999999999999999999999985 88899999999999999999            


Q ss_pred             CcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784          176 RTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       176 ~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                       ++.++++++.++.+.+|+  .......+.+|...+.++.|+    ++++.+++++.|+.+++||+.++.      ....
T Consensus        70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~------~~~~  138 (317)
T d1vyhc1          70 -SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM----PNGDHIVSASRDKTIKMWEVQTGY------CVKT  138 (317)
T ss_dssp             -TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEEC----SSSSEEEEEETTSEEEEEETTTCC------EEEE
T ss_pred             -ccccccccccccccccccccccccccccccccccceeeecc----CCCceEEeeccCcceeEeecccce------eeeE
Confidence             899999999999999998  566677788899999999997    889999999999999999999876      4778


Q ss_pred             ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784          254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR  333 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  333 (501)
                      +.+|...+.++++++ ++.+|++++.|+.|++|++.+++......     .....+..+.+.++.               
T Consensus       139 ~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~---------------  197 (317)
T d1vyhc1         139 FTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELR-----EHRHVVECISWAPES---------------  197 (317)
T ss_dssp             EECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECCSC---------------
T ss_pred             EccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeeccceeeEEEe-----cCCCCceEEEEeecc---------------
Confidence            889999999999997 78899999999999999998875432211     011111111111100               


Q ss_pred             CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC
Q 010784          334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD  411 (501)
Q Consensus       334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~  411 (501)
                         ..... ..............+.++++++.|+ |++||+++++.+      .++.+|...|++++++|+ ++|++|+.
T Consensus       198 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~s~~~  267 (317)
T d1vyhc1         198 ---SYSSI-SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL------MTLVGHDNWVRGVLFHSGGKFILSCAD  267 (317)
T ss_dssp             ---GGGGG-GGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE------EEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             ---cccee-eccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE------EEEeCCCCCEEEEEECCCCCEEEEEEC
Confidence               00000 0011111222334567899999888 999999987654      888999999999999999 88888899


Q ss_pred             CCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          412 DLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       412 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      ||.|++||+.+++++.++     .+|...|++++|+|++++|++|+  .||.|++||
T Consensus       268 dg~i~iwd~~~~~~~~~~-----~~h~~~V~~~~~s~~~~~l~s~s--~Dg~i~iWd  317 (317)
T d1vyhc1         268 DKTLRVWDYKNKRCMKTL-----NAHEHFVTSLDFHKTAPYVVTGS--VDQTVKVWE  317 (317)
T ss_dssp             TTEEEEECCTTSCCCEEE-----ECCSSCEEEEEECSSSSCEEEEE--TTSEEEEEC
T ss_pred             CCeEEEEECCCCcEEEEE-----cCCCCCEEEEEEcCCCCEEEEEe--CCCeEEEeC
Confidence            999999999999999999     56788999999999999999999  669999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-40  Score=310.92  Aligned_cols=295  Identities=19%  Similarity=0.232  Sum_probs=238.0

Q ss_pred             EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecc------------------cCCcceeEEEeeccCcC
Q 010784          106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLS------------------DHKARITCMRLFPLHET  167 (501)
Q Consensus       106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~------------------~h~~~V~~~~~~~~~~~  167 (501)
                      ...|...|+||+|+|+|.+||+|+ |+.|+|||+.++ +.+..+.                  +|...|++++|+|    
T Consensus        58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~----  131 (388)
T d1erja_          58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP----  131 (388)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECT----
T ss_pred             eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEeccc-ceEeeecccccccccccccccccccCCCCCEEEEEECC----
Confidence            346888999999999999999997 899999999875 4444433                  4677799999999    


Q ss_pred             cccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc
Q 010784          168 SLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR  245 (501)
Q Consensus       168 ~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~  245 (501)
                               ++++|++|+.||.|++||  .++.+..+.+|...|.++.|+    +++..+++|+.++.+++||..+... 
T Consensus       132 ---------~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~~~~~~~~~i~~~d~~~~~~-  197 (388)
T d1erja_         132 ---------DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF----PSGDKLVSGSGDRTVRIWDLRTGQC-  197 (388)
T ss_dssp             ---------TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----TTSSEEEEEETTSEEEEEETTTTEE-
T ss_pred             ---------CCCcceecccccccccccccccccccccccccccccccccc----cccccccccccceeeeeeecccccc-
Confidence                     899999999999999999  778888899999999999997    7899999999999999999988652 


Q ss_pred             ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC
Q 010784          246 GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS  325 (501)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (501)
                           ..... +.....++.+.+.++.+|++|+.||.|++||.+++.......                           
T Consensus       198 -----~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---------------------------  244 (388)
T d1erja_         198 -----SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD---------------------------  244 (388)
T ss_dssp             -----EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------------------------
T ss_pred             -----ccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeec---------------------------
Confidence                 44444 444556677777788999999999999999999875433211                           


Q ss_pred             cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC------CCCCcccccCcccCeEEE
Q 010784          326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV------KPQPMAELDGHVGSVTQL  398 (501)
Q Consensus       326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~------~~~~~~~~~~h~~~v~~l  398 (501)
                                .......+|...|.+++|+|++++|++++.|+ |++||+++.....      ..........|...|+++
T Consensus       245 ----------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  314 (388)
T d1erja_         245 ----------SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV  314 (388)
T ss_dssp             ----------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEE
T ss_pred             ----------cccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEE
Confidence                      01123346889999999999999999999888 9999998765431      112234456788999999


Q ss_pred             EecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeE------eeccccEEEEeecCCCceEEEeecc
Q 010784          399 HMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSA------MAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~------~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      +|+|+ ++|++|+.||.|++||+.+++++.++     .+|...|.+++      |+|++++|++|+  .||.|++|+++
T Consensus       315 ~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l-----~~H~~~V~~~~~~~~~~~spd~~~l~s~s--~Dg~I~iW~~~  386 (388)
T d1erja_         315 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-----QGHRNSVISVAVANGSSLGPEYNVFATGS--GDCKARIWKYK  386 (388)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTCCEEEEE-----ECCSSCEEEEEECSSCTTCTTCEEEEEEE--TTSEEEEEEEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-----eCCCCCEEEEEEecCcccCCCCCEEEEEe--CCCEEEEEeee
Confidence            99999 89999999999999999999999999     56777888775      578999999999  66999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.3e-40  Score=297.94  Aligned_cols=284  Identities=15%  Similarity=0.168  Sum_probs=234.3

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      .+.+++++|+|..++.++ ++.+.+|++.++ ...+.+.+|.+.|++++|+|             +|++|++|+.||+|+
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~-~~~~~~~~H~~~v~~~~~sp-------------~g~~latg~~dg~i~   83 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL-TDTEIYTEHSHQTTVAKTSP-------------SGYYCASGDVHGNVR   83 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCS-SCCEEECCCSSCEEEEEECT-------------TSSEEEEEETTSEEE
T ss_pred             CeEEEEEcCCCCEEEEEe-CCEEEEEECCCC-ceeEEEcCCCCCEEEEEEeC-------------CCCeEeccccCceEe
Confidence            356889999999998875 556899999884 78888999999999999999             899999999999999


Q ss_pred             Eec--CCc--eeeeccCCCCceEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784          192 LWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS  265 (501)
Q Consensus       192 vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  265 (501)
                      |||  .+.  ....+..|.++|.+++|+    +++++|++++.  +..+++|+++++.      ....+.+|...|++++
T Consensus        84 iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~d~~~l~~~~~~~~~~~~v~~~~~~~------~~~~l~~h~~~v~~v~  153 (311)
T d1nr0a1          84 IWDTTQTTHILKTTIPVFSGPVKDISWD----SESKRIAAVGEGRERFGHVFLFDTGT------SNGNLTGQARAMNSVD  153 (311)
T ss_dssp             EEESSSTTCCEEEEEECSSSCEEEEEEC----TTSCEEEEEECCSSCSEEEEETTTCC------BCBCCCCCSSCEEEEE
T ss_pred             eeeeeccccccccccccccCcccccccc----cccccccccccccccccccccccccc------cccccccccccccccc
Confidence            999  333  235578899999999997    88999999886  4569999999876      4677889999999999


Q ss_pred             EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC
Q 010784          266 VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK  345 (501)
Q Consensus       266 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  345 (501)
                      |+|.+...|++|+.|+.|++||+++++                                            ....+..|.
T Consensus       154 ~~~~~~~~l~sgs~d~~i~i~d~~~~~--------------------------------------------~~~~~~~~~  189 (311)
T d1nr0a1         154 FKPSRPFRIISGSDDNTVAIFEGPPFK--------------------------------------------FKSTFGEHT  189 (311)
T ss_dssp             ECSSSSCEEEEEETTSCEEEEETTTBE--------------------------------------------EEEEECCCS
T ss_pred             ccccceeeecccccccccccccccccc--------------------------------------------ccccccccc
Confidence            998655578999999999999998763                                            234556788


Q ss_pred             CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCC-CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784          346 PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKP-QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      ..|.++.++|+++++++++.|+ |++||+++++..... .......+|...|++++|+|+ ++|++|+.||.|+|||+++
T Consensus       190 ~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            9999999999999999999888 999999886543111 112234578999999999999 8899999999999999999


Q ss_pred             cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ++++.++..+.    ......+.+.+++++|++++  .||.|++||.+
T Consensus       270 ~~~~~~l~~~~----~~~~~~~~~~~~~~~l~s~s--~dG~i~~wd~d  311 (311)
T d1nr0a1         270 LKVEKTIPVGT----RIEDQQLGIIWTKQALVSIS--ANGFINFVNPE  311 (311)
T ss_dssp             TEEEEEEECCS----SGGGCEEEEEECSSCEEEEE--TTCCEEEEETT
T ss_pred             CcEEEEEECCC----CccceEEEEEecCCEEEEEE--CCCEEEEEeCC
Confidence            99999885432    22334455666777899999  56999999963

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.8e-39  Score=301.52  Aligned_cols=308  Identities=13%  Similarity=0.083  Sum_probs=237.8

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS  189 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  189 (501)
                      .||+|++|+|+|.++|+|+.++.|+||+..++. ..+..+++|.++|++++|+|             ++++|++|+.|++
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-------------~~~~l~s~s~D~~   74 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-------------DSNRIVTCGTDRN   74 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-------------TTTEEEEEETTSC
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-------------CCCEEEEEECCCe
Confidence            579999999999999999999999999997642 46778899999999999999             8999999999999


Q ss_pred             eEEec--CCc--eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784          190 IRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS  265 (501)
Q Consensus       190 i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  265 (501)
                      |+|||  .+.  ....+.+|...|.+++|+    |+++.|++|+.|+.|++|+++....  ..........|...|.+++
T Consensus        75 i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~----p~~~~l~~~s~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~v~~v~  148 (371)
T d1k8kc_          75 AYVWTLKGRTWKPTLVILRINRAARCVRWA----PNEKKFAVGSGSRVISICYFEQEND--WWVCKHIKKPIRSTVLSLD  148 (371)
T ss_dssp             EEEEEEETTEEEEEEECCCCSSCEEEEEEC----TTSSEEEEEETTSSEEEEEEETTTT--EEEEEEECTTCCSCEEEEE
T ss_pred             EEEEeecccccccccccccccccccccccc----cccccceeecccCcceeeeeecccc--ccccccccccccccccccc
Confidence            99999  333  345567899999999997    8999999999999999999987653  1123445677999999999


Q ss_pred             EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC
Q 010784          266 VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK  345 (501)
Q Consensus       266 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  345 (501)
                      |+| ++.+|++|+.|+.|++||.............        ...                  .+...++.+.....|.
T Consensus       149 ~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~--------~~~------------------~~~~~~~~~~~~~~~~  201 (371)
T d1k8kc_         149 WHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT--------PWG------------------SKMPFGELMFESSSSC  201 (371)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCB--------TTB------------------SCCCTTCEEEECCCCS
T ss_pred             ccc-cccceeccccCcEEEEEeeccCccccccccc--------ccc------------------ccccceeeeeeccCcc
Confidence            998 7889999999999999998865432111000        000                  0012234455667789


Q ss_pred             CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc
Q 010784          346 PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~  423 (501)
                      ..|.+++|+|++++|++++.|+ |++||+.+++.+      ..+..|..+|++++|+|+ +++++| .|+.+++|.....
T Consensus       202 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~------~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~  274 (371)
T d1k8kc_         202 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV------ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA  274 (371)
T ss_dssp             SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE------EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred             CcEEEEEeecccccccccccCCcceEEeeecccce------eeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence            9999999999999999999888 999999986554      888899999999999999 888887 5787777665432


Q ss_pred             cccccccc------------------------------------CCCCCCCcceeeeEeeccc----cEEEEeecCCCce
Q 010784          424 MLANSLLC------------------------------------NYPEEADISTGCSAMAVSG----CRIVTASYGEPGL  463 (501)
Q Consensus       424 ~~~~~~~~------------------------------------~~~~~~~~~v~~~~~s~~g----~~l~s~~~d~~g~  463 (501)
                      .....+..                                    .....|.+.|+++++.+.+    ..|+|+|  .||.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g--~Dg~  352 (371)
T d1k8kc_         275 AGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG--MDGG  352 (371)
T ss_dssp             TTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEE--TTSE
T ss_pred             CceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEc--CCCe
Confidence            11111100                                    0012367778888887754    3578888  5688


Q ss_pred             EEEeeccCCc
Q 010784          464 LQFRDFSNAT  473 (501)
Q Consensus       464 i~~w~~~~~~  473 (501)
                      |++||++..+
T Consensus       353 v~iW~~~~~~  362 (371)
T d1k8kc_         353 MSIWDVRSLE  362 (371)
T ss_dssp             EEEEEHHHHH
T ss_pred             EEEEeCCcCh
Confidence            8888886533

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7e-38  Score=289.62  Aligned_cols=286  Identities=16%  Similarity=0.230  Sum_probs=244.8

Q ss_pred             eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      ....+.+|..+|++|+|+|++.+||+|+.||.|+|||+.++ +.+..+.+|...|++++|+|             +++++
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~-~~~~~~~~~~~~v~~v~~~~-------------~~~~l  112 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAP-------------SGNYV  112 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEEECSCSCEEEEEECT-------------TSSEE
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc-eeEEEEecccccEEeeEeec-------------cceee
Confidence            34567789999999999999999999999999999999985 78889999999999999999             89999


Q ss_pred             EEeeCCCceEEec------CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          182 VTSSCDHSIRLWW------KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       182 ~s~~~dg~i~vwd------~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      ++|+.|+.+++|+      .......+.+|..........     .+..+..+..|.....+......      ......
T Consensus       113 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  181 (340)
T d1tbga_         113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-----DDNQIVTSSGDTTCALWDIETGQ------QTTTFT  181 (340)
T ss_dssp             EEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-----ETTEEEEEETTTEEEEEETTTTE------EEEEEE
T ss_pred             eeecccceeecccccccccccccceecccccccccccccc-----ccccccccccccccccccccccc------cccccc
Confidence            9999999999997      223445677888877777653     56678888899999999887765      355566


Q ss_pred             CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784          256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM  335 (501)
Q Consensus       256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  335 (501)
                      .+...+....+.+ ...++++|+.|+.|++||+++++                                           
T Consensus       182 ~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~-------------------------------------------  217 (340)
T d1tbga_         182 GHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGM-------------------------------------------  217 (340)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTE-------------------------------------------
T ss_pred             ccceeEeeecccc-ccceeEEeecCceEEEEECCCCc-------------------------------------------
Confidence            6778888888886 77899999999999999998763                                           


Q ss_pred             ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC
Q 010784          336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL  413 (501)
Q Consensus       336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg  413 (501)
                       .+..+.+|...|++++|+|++++|++|+.|+ |++||++..+..    .......+...|++++|+|+ +++++|+.||
T Consensus       218 -~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg  292 (340)
T d1tbga_         218 -CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             -EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE----EEECCTTCCSCEEEEEECSSSCEEEEEETTS
T ss_pred             -EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccc----cccccccccCceEEEEECCCCCEEEEEECCC
Confidence             3345677899999999999999999999998 999999986543    11233456778999999999 8999999999


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      .|++||+.+++++.++     .+|...|++++|+|++++|++|+  .||.|++||
T Consensus       293 ~i~iwd~~~~~~~~~~-----~~H~~~V~~l~~s~d~~~l~s~s--~Dg~v~iWd  340 (340)
T d1tbga_         293 NCNVWDALKADRAGVL-----AGHDNRVSCLGVTDDGMAVATGS--WDSFLKIWN  340 (340)
T ss_dssp             CEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSCEEEEE--TTSCEEEEC
T ss_pred             EEEEEECCCCcEEEEE-----cCCCCCEEEEEEeCCCCEEEEEc--cCCEEEEeC
Confidence            9999999999999999     56788999999999999999999  669999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=287.35  Aligned_cols=296  Identities=13%  Similarity=0.172  Sum_probs=233.7

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR  191 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  191 (501)
                      |...+.++.+|...........+..-.+....+.++++ +|.+.|++++|+|             +|++|++|+ ||.|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~H~~~V~~v~fs~-------------~g~~latg~-dg~V~   75 (337)
T d1gxra_          11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISN-------------PTRHVYTGG-KGCVK   75 (337)
T ss_dssp             ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECS-------------SSSEEEEEC-BSEEE
T ss_pred             ccccccCCCCCCEEeeccCCcceecCCCCCCceEEEEC-CCCCcEEEEEECC-------------CCCEEEEEE-CCEEE
Confidence            34556666666655443332222111111113445555 8999999999999             899999998 89999


Q ss_pred             Eec--CCce-----eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          192 LWW--KGSC-----QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       192 vwd--~~~~-----~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      |||  .+..     .....+|.+.|.+++|+    +++++|++|+.||.|++||+.....    .....+..|...+..+
T Consensus        76 iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s----~dg~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~  147 (337)
T d1gxra_          76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLL----PDGCTLIVGGEASTLSIWDLAAPTP----RIKAELTSSAPACYAL  147 (337)
T ss_dssp             EEETTSTTCCSCSEEEECSCTTSBEEEEEEC----TTSSEEEEEESSSEEEEEECCCC------EEEEEEECSSSCEEEE
T ss_pred             EEEccCCcccceeEEeeecCCCCcEEEEEEc----CCCCEEEEeeccccccccccccccc----cccccccccccccccc
Confidence            998  2221     22345799999999997    8999999999999999999876542    2456678899999999


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC  344 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  344 (501)
                      .++| ++.++++++.|+.|++||+++++.                                            ......|
T Consensus       148 ~~~~-~~~~l~s~~~d~~i~~~~~~~~~~--------------------------------------------~~~~~~~  182 (337)
T d1gxra_         148 AISP-DSKVCFSCCSDGNIAVWDLHNQTL--------------------------------------------VRQFQGH  182 (337)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEETTTTEE--------------------------------------------EEEECCC
T ss_pred             cccc-cccccccccccccccccccccccc--------------------------------------------ccccccc
Confidence            9997 788999999999999999987632                                            2345568


Q ss_pred             CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784          345 KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       345 ~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~  422 (501)
                      ...|.+++|++++..+++++.++ +++||+++++.+      ..+ .|...|++++|+|+ .++++|+.||.|++||+.+
T Consensus       183 ~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~------~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~  255 (337)
T d1gxra_         183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL------QQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE------EEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             ccccccccccccccccccccccccccccccccceee------ccc-ccccceEEEEEcccccccceeccccccccccccc
Confidence            89999999999999999999888 999999987643      444 47889999999999 8888889999999999998


Q ss_pred             cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc--------------------CCccceeecCCC
Q 010784          423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS--------------------NATCPVLKHEVQ  482 (501)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~--------------------~~~~~~~s~~~d  482 (501)
                      ++.....      .|...|++++|+|+|++|++++  .||.|++||+.                    +.+..+++++.|
T Consensus       256 ~~~~~~~------~~~~~i~~v~~s~~g~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D  327 (337)
T d1gxra_         256 PDKYQLH------LHESCVLSLKFAYCGKWFVSTG--KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             SCEEEEC------CCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             ccccccc------ccccccceEEECCCCCEEEEEe--CCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCC
Confidence            8765433      5778899999999999999999  66999999944                    445568899999


Q ss_pred             Cceeeecc
Q 010784          483 NDSKFWGP  490 (501)
Q Consensus       483 ~~~~~w~~  490 (501)
                      +.+++|++
T Consensus       328 ~~I~vWdl  335 (337)
T d1gxra_         328 KKATVYEV  335 (337)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999987

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-36  Score=277.49  Aligned_cols=265  Identities=25%  Similarity=0.391  Sum_probs=234.0

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      ....+|+||.+.|++|+|+|             ++++|+||+.||+|+|||  +++.+.++.+|...|.+++|+    ++
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp-------------~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~----~~   70 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHP-------------VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD----HS   70 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECS-------------SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEEC----TT
T ss_pred             CccEEEcCCCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeee----cc
Confidence            45678999999999999999             889999999999999999  788899999999999999997    89


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      +.+++++..++.+.+|+.....      ....+..|...+.++.+++ ++..+++++.|+.+++||+++++.        
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~--------  135 (317)
T d1vyhc1          71 GKLLASCSADMTIKLWDFQGFE------CIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYC--------  135 (317)
T ss_dssp             SSEEEEEETTSCCCEEETTSSC------EEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE--------
T ss_pred             cccccccccccccccccccccc------cccccccccccceeeeccC-CCceEEeeccCcceeEeeccccee--------
Confidence            9999999999999999998876      3677788999999999997 778899999999999999987642        


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV  380 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  380 (501)
                                                          +..+..|...+.+++++|++.+|++++.|+ |++|++.+.+.. 
T Consensus       136 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-  178 (317)
T d1vyhc1         136 ------------------------------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK-  178 (317)
T ss_dssp             ------------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-
T ss_pred             ------------------------------------eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceee-
Confidence                                                345567888999999999999999999998 999999986654 


Q ss_pred             CCCCcccccCcccCeEEEEecCC---------------------eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCc
Q 010784          381 KPQPMAELDGHVGSVTQLHMDPY---------------------KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADI  439 (501)
Q Consensus       381 ~~~~~~~~~~h~~~v~~l~~~~~---------------------~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  439 (501)
                           ..+.+|...+.++.++|+                     .++++++.|+.|++||+.+++++.++     .+|..
T Consensus       179 -----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-----~~~~~  248 (317)
T d1vyhc1         179 -----AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-----VGHDN  248 (317)
T ss_dssp             -----EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-----ECCSS
T ss_pred             -----EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE-----eCCCC
Confidence                 778888889999988764                     36788889999999999999999998     56788


Q ss_pred             ceeeeEeeccccEEEEeecCCCceEEEeeccC---------------------CccceeecCCCCceeeec
Q 010784          440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSN---------------------ATCPVLKHEVQNDSKFWG  489 (501)
Q Consensus       440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~---------------------~~~~~~s~~~d~~~~~w~  489 (501)
                      .|.+++|+|++++|++|+  .||.|++||+..                     .+..+++++.|+++++|+
T Consensus       249 ~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCA--DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEE--TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEE--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999  669999999543                     345577899999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-36  Score=276.90  Aligned_cols=266  Identities=14%  Similarity=0.151  Sum_probs=221.1

Q ss_pred             cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784          151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG  228 (501)
Q Consensus       151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg  228 (501)
                      .+.+.+..++++|             +|+.|+.++ ++.|.+||  .......+.+|...|++++|+    |+|++|++|
T Consensus        15 ~~r~~~~~~a~~~-------------~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~s----p~g~~latg   76 (311)
T d1nr0a1          15 TARGTAVVLGNTP-------------AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS----PSGYYCASG   76 (311)
T ss_dssp             CCTTCCCCCEECT-------------TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEEC----TTSSEEEEE
T ss_pred             CCCCCeEEEEEcC-------------CCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEe----CCCCeEecc
Confidence            4455677788888             789998886 66799998  667778889999999999997    899999999


Q ss_pred             eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC--CCeEEEEECCCCccccceecccceecC
Q 010784          229 GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK--DSKVRVWDTSTSSAVRSSCCVGMTSVP  306 (501)
Q Consensus       229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~  306 (501)
                      +.||+|++||+.+...    .....+..|..+|.+++|+| +++++++++.  +..+++|++++++.             
T Consensus        77 ~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~-------------  138 (311)
T d1nr0a1          77 DVHGNVRIWDTTQTTH----ILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTS-------------  138 (311)
T ss_dssp             ETTSEEEEEESSSTTC----CEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCB-------------
T ss_pred             ccCceEeeeeeecccc----ccccccccccCccccccccc-cccccccccccccccccccccccccc-------------
Confidence            9999999999998763    12355788999999999998 7778888875  45688999887643             


Q ss_pred             CCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcE-EEEEcCCc-EEEEecCCCCCCCCCCC
Q 010784          307 GVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSL-ICTGGIGK-AMTWDIRRSQDAVKPQP  384 (501)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~d~-i~iwd~~~~~~~~~~~~  384 (501)
                                                     ...+.+|...|++++|+|++.+ +++|+.|+ |++||+++.+..     
T Consensus       139 -------------------------------~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~-----  182 (311)
T d1nr0a1         139 -------------------------------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-----  182 (311)
T ss_dssp             -------------------------------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-----
T ss_pred             -------------------------------cccccccccccccccccccceeeecccccccccccccccccccc-----
Confidence                                           2345678899999999999874 78888888 999999987654     


Q ss_pred             cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccC--CCCCCCcceeeeEeeccccEEEEeecCCC
Q 010784          385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCN--YPEEADISTGCSAMAVSGCRIVTASYGEP  461 (501)
Q Consensus       385 ~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~s~~~d~~  461 (501)
                       ..+..|...|+++.++|+ +++++++.||.|++||..+++.+..+...  ...+|...|++++|+|++++|++|+  .|
T Consensus       183 -~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs--~D  259 (311)
T d1nr0a1         183 -STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS--AD  259 (311)
T ss_dssp             -EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE--TT
T ss_pred             -cccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEe--CC
Confidence             788899999999999999 88998899999999999998877766432  2346788999999999999999999  56


Q ss_pred             ceEEEeeccCCc----------------------cceeecCCCCceeeeccc
Q 010784          462 GLLQFRDFSNAT----------------------CPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       462 g~i~~w~~~~~~----------------------~~~~s~~~d~~~~~w~~~  491 (501)
                      |.|++||+.++.                      ..+++++.||.+++|+++
T Consensus       260 g~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         260 KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            999999965332                      346688899999999874

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.8e-36  Score=273.87  Aligned_cols=287  Identities=13%  Similarity=0.138  Sum_probs=223.7

Q ss_pred             eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      +...+.+|..+|++++|+|++.+|++|+.|+.|++||+.++ +..+.+ .+|.+.|++++|+|             ++. 
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~~~h~~~v~~v~~~~-------------~g~-   68 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFPDVHATMITGIKTTS-------------KGD-   68 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSSCSCSSCEEEEEECT-------------TSC-
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEcCCCCCcEEEEEeec-------------cce-
Confidence            34567889999999999999999999999999999999986 555665 57999999999999             665 


Q ss_pred             EEEeeCCCceEEec-CCcee----eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784          181 LVTSSCDHSIRLWW-KGSCQ----RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       181 l~s~~~dg~i~vwd-~~~~~----~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      +++++.|+.+++|+ .+...    .....+...+.+++|+    +++.++++++ ++.+++|+....        .... 
T Consensus        69 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~g~~~~~~~-~~~i~~~~~~~~--------~~~~-  134 (299)
T d1nr0a2          69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS----ADGDIAVAAC-YKHIAIYSHGKL--------TEVP-  134 (299)
T ss_dssp             EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEEC----TTSSCEEEEE-SSEEEEEETTEE--------EEEE-
T ss_pred             eecccceeeEEEeccCCccccccccccccccccccccccc----cccccccccc-cccccccccccc--------cccc-
Confidence            55667799999998 32222    2234577889999997    7888777665 568999985432        2222 


Q ss_pred             CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784          256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM  335 (501)
Q Consensus       256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  335 (501)
                       ....+.+++++| +++++++|+.||.|++||+++++...                                        
T Consensus       135 -~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~----------------------------------------  172 (299)
T d1nr0a2         135 -ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSE----------------------------------------  172 (299)
T ss_dssp             -CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEE----------------------------------------
T ss_pred             -cccccccccccc-cccccccccccccccccccccccccc----------------------------------------
Confidence             334578899997 78899999999999999987653211                                        


Q ss_pred             ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC
Q 010784          336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL  413 (501)
Q Consensus       336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg  413 (501)
                         .....|...|++++|+|++++|++++.++ |++||+.++...   .....+.+|...|++++|+|+ .++++|+.||
T Consensus       173 ---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~---~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg  246 (299)
T d1nr0a2         173 ---VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL---AHTNSWTFHTAKVACVSWSPDNVRLATGSLDN  246 (299)
T ss_dssp             ---EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE---SCCCCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ---cccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccceEEEcCCC
Confidence               12234788999999999999999999888 999999876543   334567789999999999999 9999999999


Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      .|++||++++.....+...  .++...+.++ +++++++|++++  .|+.|++||+.
T Consensus       247 ~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~-~~~~~~~l~s~s--~D~~i~iWdl~  298 (299)
T d1nr0a2         247 SVIVWNMNKPSDHPIIIKG--AHAMSSVNSV-IWLNETTIVSAG--QDSNIKFWNVP  298 (299)
T ss_dssp             CEEEEETTCTTSCCEEETT--SSTTSCEEEE-EEEETTEEEEEE--TTSCEEEEECC
T ss_pred             EEEEEECCCCCcceEEEec--CCCCCcEEEE-EECCCCEEEEEe--CCCEEEEEecc
Confidence            9999999887654433221  2234556665 456778999999  66999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-36  Score=280.90  Aligned_cols=322  Identities=16%  Similarity=0.283  Sum_probs=235.8

Q ss_pred             CeeeEEEecCCCC-ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784          101 PLDVCFYSVAKPH-DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN  179 (501)
Q Consensus       101 ~~~~~~~~~~~~i-~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~  179 (501)
                      |.+..+.+|...| +|+.++  +.+|++|+.|+.|+|||+.++ +.+.++.+|.+.|++++|+|              ++
T Consensus         3 p~~~tL~GH~~~vitc~~~~--~~~l~tgs~Dg~i~vWd~~~~-~~~~~l~~H~~~V~~l~~s~--------------~~   65 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINK-KFLLQLSGHDGGVWALKYAH--------------GG   65 (355)
T ss_dssp             CEEEEEECCSSSCEEEEEEE--TTEEEEEETTTEEEEEETTTT-EEEEEEECCSSCEEEEEEET--------------TT
T ss_pred             CCcEEECCcCCCcEEEEEEC--CCEEEEEeCCCeEEEEECCCC-cEEEEEECCCCCEEEEEEcC--------------CC
Confidence            5667788898885 776664  679999999999999999985 88999999999999999997              46


Q ss_pred             EEEEeeCCCceEEec--CCceeeeccCCC--CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc---------
Q 010784          180 VLVTSSCDHSIRLWW--KGSCQRCFKGHN--GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG---------  246 (501)
Q Consensus       180 ~l~s~~~dg~i~vwd--~~~~~~~~~~h~--~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~---------  246 (501)
                      +|++|+.||+|++|+  ..........+.  .......+.    +++.++++++.|+.|++||+.+.....         
T Consensus        66 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  141 (355)
T d1nexb2          66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY----KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP  141 (355)
T ss_dssp             EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEE----TTEEEEEEEETTSEEEEEECCC-----------CCC
T ss_pred             EEEEEecccccccccccccccccccccccccccccccccc----cccceeeeecCCCcEEEEEccCCceeccccccceec
Confidence            899999999999999  444444443333  333444554    788999999999999999998754310         


Q ss_pred             --------cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC--C
Q 010784          247 --------QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH--E  316 (501)
Q Consensus       247 --------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  316 (501)
                              ..........|...+...  .+ ++++++++..|+.|++||+++++.+....     ........+.++  .
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~  213 (355)
T d1nexb2         142 LVFHTPEENPYFVGVLRGHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILS-----GHTDRIYSTIYDHER  213 (355)
T ss_dssp             EEESCTTTCTTEEEEEECCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEEETTT
T ss_pred             cceeccccccceeeeeeecccccccc--cc-ccceeeeecccceeeeeecccccceeeee-----ccccccccccccccc
Confidence                    001112223344444433  32 56789999999999999999876543221     122233334333  3


Q ss_pred             CeEEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccC
Q 010784          317 SMLYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGS  394 (501)
Q Consensus       317 ~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~  394 (501)
                      ..++.+. ++.+++||++++..+..+.+|...|.+++++  +++|++|+.|+ |++||+++..        ..+..|...
T Consensus       214 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~  283 (355)
T d1nexb2         214 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--------RKFSYHHTN  283 (355)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC--------EEEEEECTT
T ss_pred             eeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccc--------eecccccCC
Confidence            3344443 3589999999999999999999999999986  46999999888 9999998764        345566666


Q ss_pred             eEEEE-ecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEE--Eeec
Q 010784          395 VTQLH-MDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQ--FRDF  469 (501)
Q Consensus       395 v~~l~-~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~--~w~~  469 (501)
                      +.++. ++++ .++++| .||.|++||+++++++....    .+|...|.+++|+|+ .++++++  .||.++  +|||
T Consensus       284 ~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~----~~~~~~V~~v~~~~~-~~~~~~s--~dg~~~l~~~df  354 (355)
T d1nexb2         284 LSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANI----LKDADQIWSVNFKGK-TLVAAVE--KDGQSFLEILDF  354 (355)
T ss_dssp             CCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCT----TTTCSEEEEEEEETT-EEEEEEE--SSSCEEEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEe----cCCCCCEEEEEEcCC-eEEEEEE--CCCcEEEEEEeC
Confidence            76664 4666 888887 68999999999999886542    567889999999987 4677777  568755  4554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-35  Score=271.12  Aligned_cols=323  Identities=19%  Similarity=0.265  Sum_probs=250.2

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ..+..|...|.+ +++++|.+||||+.|+.|+|||+.++ ++++++.+|.+.|.+++|++               ++|++
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~-~~~~~~~~h~~~V~~v~~~~---------------~~l~s   72 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMRD---------------NIIIS   72 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC-CEEEECCCCSSCEEEEEEET---------------TEEEE
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCCCCEEEEEeCC---------------Ccccc
Confidence            456788888754 36667889999999999999999985 88999999999999999987               59999


Q ss_pred             eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                      |+.|+++++|+  ..........+...+.....      ....++.+..|+.+.+|+..++..      ...+..+....
T Consensus        73 ~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~i~~~~~~~~~~------~~~~~~~~~~~  140 (342)
T d2ovrb2          73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL------HEKRVVSGSRDATLRVWDIETGQC------LHVLMGHVAAV  140 (342)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEE------ETTEEEEEETTSEEEEEESSSCCE------EEEEECCSSCE
T ss_pred             ceecccccccccccccceecccccceeEeeeec------ccccccccccceeEEEeecccccc------eeeeecccccc
Confidence            99999999998  44444455556666666654      346888899999999999998763      44444343333


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC-CcEEEEEcCCCceEee
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-SSVVTIDLRTMQKVMT  340 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~  340 (501)
                      .  ...+ ....+++++.|+.|++||.+..+.+....     ..........+++..++.++. +.|++||++.++.+..
T Consensus       141 ~--~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~  212 (342)
T d2ovrb2         141 R--CVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQ-----GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT  212 (342)
T ss_dssp             E--EEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEEC-----CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             e--eecc-ccceeeeecCCCeEEEeecccceeeEEEc-----CcccccccccCCCCEEEEEeCCCeEEEeecccceeeeE
Confidence            3  2232 55688999999999999998775433221     233445555666665555543 5899999999999999


Q ss_pred             eccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEe
Q 010784          341 PAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWE  419 (501)
Q Consensus       341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd  419 (501)
                      +..|...+.++++++  ++|++|+.|+ |++||+...+..   ..+.....|...+.++.++++ ++++|+.||.|++||
T Consensus       213 ~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         213 LTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCL---QTLQGPNKHQSAVTCLQFNKN-FVITSSDDGTVKLWD  286 (342)
T ss_dssp             ECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEE---EEECSTTSCSSCEEEEEECSS-EEEEEETTSEEEEEE
T ss_pred             ecccccceeEEecCC--CEEEEEcCCCEEEEEeccccccc---ccccccceeeeceeecccCCC-eeEEEcCCCEEEEEE
Confidence            999999999888754  5999999888 999999886643   122333456778888888776 556667999999999


Q ss_pred             CCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc----eEEEeeccC
Q 010784          420 TDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG----LLQFRDFSN  471 (501)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g----~i~~w~~~~  471 (501)
                      +++++.++++......+|...|++++|+|++.+|++|+  .||    .|++|||..
T Consensus       287 ~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~--~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS--RNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC--SSSSSCCEEEEEECCC
T ss_pred             CCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEe--CCCCCeeEEEEEeCCC
Confidence            99999998886555567788999999999999999998  446    599999875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.3e-36  Score=279.72  Aligned_cols=247  Identities=11%  Similarity=0.096  Sum_probs=202.9

Q ss_pred             CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCCCCEEEE
Q 010784          152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGSGKILAS  227 (501)
Q Consensus       152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~l~s  227 (501)
                      +.++|+|++|+|             ++++||+|+.||.|+|||  .++  .+..+++|.++|.+++|+    |++++|++
T Consensus         6 ~~~pIt~~~~s~-------------dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fs----p~~~~l~s   68 (371)
T d1k8kc_           6 LVEPISCHAWNK-------------DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA----PDSNRIVT   68 (371)
T ss_dssp             CSSCCCEEEECT-------------TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE----TTTTEEEE
T ss_pred             CCCCeEEEEECC-------------CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEEC----CCCCEEEE
Confidence            347899999999             899999999999999999  343  567789999999999998    89999999


Q ss_pred             eeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCC
Q 010784          228 GGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG  307 (501)
Q Consensus       228 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  307 (501)
                      |+.|++|++||+.++..    .....+.+|...|.+++|+| +++.|++|+.|+.|++|++.......            
T Consensus        69 ~s~D~~i~vWd~~~~~~----~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~------------  131 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRTW----KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWW------------  131 (371)
T ss_dssp             EETTSCEEEEEEETTEE----EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEE------------
T ss_pred             EECCCeEEEEeeccccc----cccccccccccccccccccc-ccccceeecccCcceeeeeecccccc------------
Confidence            99999999999987642    23455678999999999998 78899999999999999987653211            


Q ss_pred             CceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC------
Q 010784          308 VPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV------  380 (501)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~------  380 (501)
                                                  ........|...|.+++|+|++++|++|+.|+ |++||........      
T Consensus       132 ----------------------------~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~  183 (371)
T d1k8kc_         132 ----------------------------VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP  183 (371)
T ss_dssp             ----------------------------EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBT
T ss_pred             ----------------------------cccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccc
Confidence                                        11123456788999999999999999999988 9999987643221      


Q ss_pred             ------CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE
Q 010784          381 ------KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI  453 (501)
Q Consensus       381 ------~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  453 (501)
                            ....+....+|...|++++|+|+ +++++++.|+.|++||+.+++.+..+     ..|..+|.+++|+|++++|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~s~~fs~d~~~l  258 (371)
T d1k8kc_         184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-----ASETLPLLAVTFITESSLV  258 (371)
T ss_dssp             TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-----ECSSCCEEEEEEEETTEEE
T ss_pred             ccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee-----ecccccceeeeecCCCCEE
Confidence                  01234556788899999999999 88888899999999999999999888     4567889999999999988


Q ss_pred             EEeecCCCceEEEee
Q 010784          454 VTASYGEPGLLQFRD  468 (501)
Q Consensus       454 ~s~~~d~~g~i~~w~  468 (501)
                      ++|+   |+.+++|.
T Consensus       259 a~g~---d~~~~~~~  270 (371)
T d1k8kc_         259 AAGH---DCFPVLFT  270 (371)
T ss_dssp             EEET---TSSCEEEE
T ss_pred             EEEc---CCceEEEE
Confidence            8764   35555544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-35  Score=276.67  Aligned_cols=293  Identities=17%  Similarity=0.224  Sum_probs=218.6

Q ss_pred             ecCCeeeEEEEecccccc---cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeee
Q 010784          127 QGSSIQNIKIDNFLSESY---YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRC  201 (501)
Q Consensus       127 ~g~~d~~i~vw~~~~~~~---~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~  201 (501)
                      .+..++.+.+|+......   .+....+|++.|+||+|+|             +|++|++|+ |++|+|||  +++.+..
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~-------------dg~~lasg~-d~~i~iW~~~~~~~~~~   98 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-------------DGEYLATGC-NKTTQVYRVSDGSLVAR   98 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECT-------------TSSEEEEEC-BSCEEEEETTTCCEEEE
T ss_pred             ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECC-------------CCCEEEEEe-CCeEEEEEecccceEee
Confidence            344556777888654321   1222337999999999999             899999987 99999998  5555544


Q ss_pred             cc------------------CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          202 FK------------------GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       202 ~~------------------~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      +.                  .|...|++++|+    +++++|++|+.||.|++||...++      ......+|...|.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s----~~~~~l~s~~~dg~v~i~~~~~~~------~~~~~~~h~~~v~~  168 (388)
T d1erja_          99 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFS----PDGKFLATGAEDRLIRIWDIENRK------IVMILQGHEQDIYS  168 (388)
T ss_dssp             ECC-----------------CCCCBEEEEEEC----TTSSEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEE
T ss_pred             ecccccccccccccccccccCCCCCEEEEEEC----CCCCcceecccccccccccccccc------cccccccccccccc
Confidence            32                  467789999997    899999999999999999999876      47778899999999


Q ss_pred             EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784          264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  343 (501)
                      +.+++ ++..+++++.++.+++||.++....                                            .....
T Consensus       169 ~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~--------------------------------------------~~~~~  203 (388)
T d1erja_         169 LDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS--------------------------------------------LTLSI  203 (388)
T ss_dssp             EEECT-TSSEEEEEETTSEEEEEETTTTEEE--------------------------------------------EEEEC
T ss_pred             ccccc-ccccccccccceeeeeeeccccccc--------------------------------------------ccccc
Confidence            99997 7788999999999999999876321                                            12222


Q ss_pred             CCCcEEEEEEc-CCCcEEEEEcCCc-EEEEecCCCCCCCC-CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEe
Q 010784          344 CKPILHSFSIM-PSKSLICTGGIGK-AMTWDIRRSQDAVK-PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWE  419 (501)
Q Consensus       344 ~~~~v~~v~~~-~~~~~l~~~~~d~-i~iwd~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd  419 (501)
                      +.. ..++.+. +++.+|++|+.|+ |++||.+++..... ........+|...|++++|+|+ .++++|+.||.|++||
T Consensus       204 ~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd  282 (388)
T d1erja_         204 EDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN  282 (388)
T ss_dssp             SSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEe
Confidence            333 4444454 5789999999888 99999998764311 1122334578899999999999 8889999999999999


Q ss_pred             CCCcccccccccCC-------CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc-------------------
Q 010784          420 TDTGMLANSLLCNY-------PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT-------------------  473 (501)
Q Consensus       420 ~~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~-------------------  473 (501)
                      +.+++.........       ...|...|.+++|+|+|++|++|+  .||.|++||+.++.                   
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~--~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~  360 (388)
T d1erja_         283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS--KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN  360 (388)
T ss_dssp             C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred             ccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe--CCCEEEEEECCCCcEEEEEeCCCCCEEEEEEec
Confidence            98765443321110       135678899999999999999999  66999999965433                   


Q ss_pred             --------cceeecCCCCceeeeccc
Q 010784          474 --------CPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       474 --------~~~~s~~~d~~~~~w~~~  491 (501)
                              ..+++++.||+|++|+++
T Consensus       361 ~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         361 GSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CcccCCCCCEEEEEeCCCEEEEEeee
Confidence                    347799999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-34  Score=264.60  Aligned_cols=285  Identities=14%  Similarity=0.157  Sum_probs=219.8

Q ss_pred             CCceEEeeCCcEEEeecCC-eeeEEEEecccc-cccceecccCC-cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784          112 PHDHILLDNNDIFSTQGSS-IQNIKIDNFLSE-SYYRATLSDHK-ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH  188 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~-d~~i~vw~~~~~-~~~~~~~~~h~-~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  188 (501)
                      .+++++|+|++..++.++. ...++.|+.... ......+.+|. ..|++++|+|..           ++.+|++|+.||
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~-----------~g~~lasgs~Dg   87 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK-----------GSQYLCSGDESG   87 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSST-----------TCCEEEEEETTS
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCC-----------CCCEEEEEeCCC
Confidence            3689999999999987754 445777875432 24455677874 679999999843           678999999999


Q ss_pred             ceEEec--CCce--------eeeccCCCCceEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceeeccC
Q 010784          189 SIRLWW--KGSC--------QRCFKGHNGPVSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKATLYG  256 (501)
Q Consensus       189 ~i~vwd--~~~~--------~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~  256 (501)
                      +|+|||  .+..        ...+..|.++|.+++|+    ++++++++++.  ++.+++|+.+++.      .+..+.+
T Consensus        88 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~  157 (325)
T d1pgua1          88 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD----FEGRRLCVVGEGRDNFGVFISWDSGN------SLGEVSG  157 (325)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC----TTSSEEEEEECCSSCSEEEEETTTCC------EEEECCS
T ss_pred             CEEEeeecCCcceeeeecccccccccccCcEEEEEEC----CCCCccceeeccccceEEEEeecccc------cceeeee
Confidence            999998  2221        12345788999999997    88998887654  6789999998876      5788899


Q ss_pred             CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784          257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ  336 (501)
Q Consensus       257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  336 (501)
                      |...|.+++|+|.+..++++++.|+.+++||....+...                                         
T Consensus       158 h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~-----------------------------------------  196 (325)
T d1pgua1         158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA-----------------------------------------  196 (325)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE-----------------------------------------
T ss_pred             cccccccccccccccceEEEeecccccccccccccccce-----------------------------------------
Confidence            999999999998666678899999999999987764321                                         


Q ss_pred             eEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec---CC-eEEEEec
Q 010784          337 KVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD---PY-KIVTGGR  410 (501)
Q Consensus       337 ~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~-~~l~~gs  410 (501)
                      .......|...|.+++|+|+ +.++++++.|+ |++||+++++..      ..+.+|...+.++.|+   |+ ++|++++
T Consensus       197 ~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~------~~l~~~~~~v~~~~~s~~~~dg~~l~s~s  270 (325)
T d1pgua1         197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL------KYIEDDQEPVQGGIFALSWLDSQKFATVG  270 (325)
T ss_dssp             EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE------EECCBTTBCCCSCEEEEEESSSSEEEEEE
T ss_pred             ecccccCCCCccEEeeeccccceeccccccccceeeeeecccccc------ccccccccccccceeeeeccCCCEEEEEe
Confidence            11223457888999999997 78999999888 999999987654      7788887776555444   44 7888888


Q ss_pred             CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecc-ccEEEEeecCCCceEEEeec
Q 010784          411 DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS-GCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       411 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~s~~~d~~g~i~~w~~  469 (501)
                      .|+.|+|||+++++++..+..+.   +...+..+++.+. +.+|++++  .||.|++||+
T Consensus       271 ~D~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s--~dg~i~vwdl  325 (325)
T d1pgua1         271 ADATIRVWDVTTSKCVQKWTLDK---QQLGNQQVGVVATGNGRIISLS--LDGTLNFYEL  325 (325)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCT---TCGGGCEEEEEEEETTEEEEEE--TTSCEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEEecC---CcccCeEEEEEECCCCEEEEEE--CCCEEEEEEC
Confidence            99999999999999998885432   2333444555543 34788998  6699999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-34  Score=264.87  Aligned_cols=302  Identities=19%  Similarity=0.229  Sum_probs=223.0

Q ss_pred             ceecccCCcce-eEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCC
Q 010784          146 RATLSDHKARI-TCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       146 ~~~~~~h~~~V-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~  222 (501)
                      ..+|+||.+.| +|++|               ++++|+||+.||+|+|||  +++++.++.+|.++|++++|+    + +
T Consensus         5 ~~tL~GH~~~vitc~~~---------------~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s----~-~   64 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF---------------EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA----H-G   64 (355)
T ss_dssp             EEEEECCSSSCEEEEEE---------------ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEE----T-T
T ss_pred             cEEECCcCCCcEEEEEE---------------CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEc----C-C
Confidence            45789998885 66655               568999999999999999  788999999999999999997    4 4


Q ss_pred             CEEEEeeCCCcEEEEeccCCCccccccceeeccC--CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYG--HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      .+|++|+.||.|++|++.....      ......  +........+.+ ++..+++++.|+.|++||+++..........
T Consensus        65 ~~l~s~s~D~~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~  137 (355)
T d1nexb2          65 GILVSGSTDRTVRVWDIKKGCC------THVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEE  137 (355)
T ss_dssp             TEEEEEETTCCEEEEETTTTEE------EEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC----------
T ss_pred             CEEEEEeccccccccccccccc------cccccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceecccccc
Confidence            6899999999999999988753      333332  233334445554 7789999999999999999876543221110


Q ss_pred             cce------------------ecCCCceeeecCCCeEEEEeC-CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEE
Q 010784          301 GMT------------------SVPGVPVDMKCHESMLYIASG-SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLIC  361 (501)
Q Consensus       301 ~~~------------------~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~  361 (501)
                      ...                  .....+.....++...+.... +.+.+||+++++.+....++...+.++.++|++.+++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (355)
T d1nexb2         138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI  217 (355)
T ss_dssp             -CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred             ceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeee
Confidence            000                  111222233344444444443 4899999999999999999999999999999999999


Q ss_pred             EEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784          362 TGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIS  440 (501)
Q Consensus       362 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  440 (501)
                      +++.|+ |++||++++...      ..+.+|...|++++++++ ++++|+.||.|++||+.++......       |...
T Consensus       218 ~~~~d~~i~i~d~~~~~~~------~~~~~h~~~v~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~  283 (355)
T d1nexb2         218 SASMDTTIRIWDLENGELM------YTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSRKFSY-------HHTN  283 (355)
T ss_dssp             EEETTSCEEEEETTTCCEE------EEECCCSSCCCEEEECSS-EEEEECTTSEEEEEETTTCCEEEEE-------ECTT
T ss_pred             cccccceEEeeeccccccc------cccccccccccccccccc-eeeeeecccccccccccccceeccc-------ccCC
Confidence            999988 999999987654      888999999999999875 5666789999999999887655443       2333


Q ss_pred             eee-eEeeccccEEEEeecCCCceEEEeeccCCcc---------------------ceeecCCCCceeeeccc
Q 010784          441 TGC-SAMAVSGCRIVTASYGEPGLLQFRDFSNATC---------------------PVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       441 v~~-~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~---------------------~~~s~~~d~~~~~w~~~  491 (501)
                      +.. ..+++++++|++|+   ||.|++||+.+++.                     .+++++.||.+++|-.+
T Consensus       284 ~~~~~~~~~~~~~l~~g~---d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         284 LSAITTFYVSDNILVSGS---ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             CCCCCEEEECSSEEEEEE---TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEe---CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEe
Confidence            444 45677888777664   48999999775442                     24467778877666543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.5e-34  Score=261.60  Aligned_cols=270  Identities=20%  Similarity=0.247  Sum_probs=225.3

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      +..++|+||.+.|++++|+|             ++++|+||+.||+|+|||  +++.+..+..|...|.+++|+    ++
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~-------------~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~----~~  108 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGT-------------DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA----PS  108 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECT-------------TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEEC----TT
T ss_pred             eeeEEECCCCCCEEEEEECC-------------CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEee----cc
Confidence            56678999999999999999             899999999999999999  788889999999999999997    89


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      +.++++|+.|+.+++|+......  .......+.+|..........  ....+.....+.....++......        
T Consensus       109 ~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------  176 (340)
T d1tbga_         109 GNYVACGGLDNICSIYNLKTREG--NVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQ--------  176 (340)
T ss_dssp             SSEEEEEETTCCEEEEESSSSCS--CCCEEEEECCCSSCEEEEEEE--ETTEEEEEETTTEEEEEETTTTEE--------
T ss_pred             ceeeeeecccceeeccccccccc--ccccceecccccccccccccc--cccccccccccccccccccccccc--------
Confidence            99999999999999999876543  122345567787777666555  345677788888888888765422        


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV  380 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  380 (501)
                                                          ......+...+....+.+.+.++++|+.++ |++||+++++.. 
T Consensus       177 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~-  219 (340)
T d1tbga_         177 ------------------------------------TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-  219 (340)
T ss_dssp             ------------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE-
T ss_pred             ------------------------------------cccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEE-
Confidence                                                122334567788899999999999999888 999999987654 


Q ss_pred             CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC
Q 010784          381 KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG  459 (501)
Q Consensus       381 ~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d  459 (501)
                           .++.+|...|++++|+|+ .++++|+.||.|++||+...+.+..+..   ..+...+..++|+|++++|++|+  
T Consensus       220 -----~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~g~--  289 (340)
T d1tbga_         220 -----QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGY--  289 (340)
T ss_dssp             -----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECSSSCEEEEEE--
T ss_pred             -----EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc---ccccCceEEEEECCCCCEEEEEE--
Confidence                 888999999999999999 8999999999999999998887776642   34567799999999999999999  


Q ss_pred             CCceEEEeecc---------------------CCccceeecCCCCceeeec
Q 010784          460 EPGLLQFRDFS---------------------NATCPVLKHEVQNDSKFWG  489 (501)
Q Consensus       460 ~~g~i~~w~~~---------------------~~~~~~~s~~~d~~~~~w~  489 (501)
                      .||.|++||+.                     +.+..+++++.||.+++|+
T Consensus       290 ~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            66999999954                     3455678999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-34  Score=261.74  Aligned_cols=268  Identities=12%  Similarity=0.157  Sum_probs=211.0

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeecc-CCCCceEEEEeeecCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDG  220 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~  220 (501)
                      ...+++.||.+.|++++|+|             ++++|+||+.||+|++||  +++.+..+. +|...|++++|+    +
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~-------------dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~----~   65 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSA-------------DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT----S   65 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECT-------------TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC----T
T ss_pred             ccceEcCCCCCCcEEEEECC-------------CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEee----c
Confidence            56788999999999999999             899999999999999999  677777774 799999999997    6


Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV  300 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  300 (501)
                      ++. +++++.|+.+++|+.......   ........+...+.++++++ ++..++++ .++.+++|+......       
T Consensus        66 ~g~-~~~~~~d~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~-~g~~~~~~-~~~~i~~~~~~~~~~-------  132 (299)
T d1nr0a2          66 KGD-LFTVSWDDHLKVVPAGGSGVD---SSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYSHGKLTE-------  132 (299)
T ss_dssp             TSC-EEEEETTTEEEEECSSSSSSC---TTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEETTEEEE-------
T ss_pred             cce-eecccceeeEEEeccCCcccc---cccccccccccccccccccc-cccccccc-ccccccccccccccc-------
Confidence            776 556677999999998764321   11223345777889999997 56655555 457899998543210       


Q ss_pred             cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784          301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                                                             .  .....+.+++|+|+++++++|+.++ |++||+++.+..
T Consensus       133 ---------------------------------------~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~  171 (299)
T d1nr0a2         133 ---------------------------------------V--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS  171 (299)
T ss_dssp             ---------------------------------------E--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE
T ss_pred             ---------------------------------------c--cccccccccccccccccccccccccccccccccccccc
Confidence                                                   0  1234578899999999999999988 999999876532


Q ss_pred             CCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          380 VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       380 ~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                           ......|...|++++|+|+ .++++++.|+.|++||+.++..+.....  ..+|...|++++|+|++++|++|+ 
T Consensus       172 -----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~sgs-  243 (299)
T d1nr0a2         172 -----EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS--WTFHTAKVACVSWSPDNVRLATGS-  243 (299)
T ss_dssp             -----EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC--CCCCSSCEEEEEECTTSSEEEEEE-
T ss_pred             -----cccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccceEEEc-
Confidence                 1233468889999999999 8888889999999999988766544421  146788999999999999999999 


Q ss_pred             CCCceEEEeeccCC-----------------------ccceeecCCCCceeeeccc
Q 010784          459 GEPGLLQFRDFSNA-----------------------TCPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       459 d~~g~i~~w~~~~~-----------------------~~~~~s~~~d~~~~~w~~~  491 (501)
                       .||.|++||+..+                       +..+++++.|+.+++|++.
T Consensus       244 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         244 -LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             -TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             -CCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence             6699999996532                       2346788999999999984

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-32  Score=250.82  Aligned_cols=306  Identities=19%  Similarity=0.295  Sum_probs=232.1

Q ss_pred             EecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEe
Q 010784          137 DNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSD  214 (501)
Q Consensus       137 w~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~  214 (501)
                      |+..+ .+..++|+||.+.|.+ ++++             +|++|+||+.||+|+|||  +++++.++.+|.+.|.+++|
T Consensus         1 W~~~~-~~~~~~l~GH~~~V~s-~~~~-------------~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~   65 (342)
T d2ovrb2           1 WRRGE-LKSPKVLKGHDDHVIT-CLQF-------------CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM   65 (342)
T ss_dssp             HHHSC-CCCCEEEECSTTSCEE-EEEE-------------ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEE
T ss_pred             CCCCC-CCcCEEECCcCCceEE-EEEE-------------CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEe
Confidence            44444 4778889999999865 3555             679999999999999999  88899999999999999999


Q ss_pred             eecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccc
Q 010784          215 KLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV  294 (501)
Q Consensus       215 s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~  294 (501)
                      +    +  ++|++|+.|+.+++|+......      ......+...+......   ...+..+..|+.+.+|+..+++..
T Consensus        66 ~----~--~~l~s~s~D~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~  130 (342)
T d2ovrb2          66 R----D--NIIISGSTDRTLKVWNAETGEC------IHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCL  130 (342)
T ss_dssp             E----T--TEEEEEETTSCEEEEETTTTEE------EEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEE
T ss_pred             C----C--Cccccceecccccccccccccc------eecccccceeEeeeecc---cccccccccceeEEEeecccccce
Confidence            6    3  4999999999999999987653      44445555566555443   447788999999999999988653


Q ss_pred             cceecccceecCCCceeeecCCCeEEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEe
Q 010784          295 RSSCCVGMTSVPGVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWD  372 (501)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd  372 (501)
                      ....     .................... .+.+++||.+..+.+..+.+|...+..+.+  ++.++++|+.|+ |++||
T Consensus       131 ~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d  203 (342)
T d2ovrb2         131 HVLM-----GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD  203 (342)
T ss_dssp             EEEE-----CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred             eeee-----cccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEee
Confidence            3221     11122222333334444444 458999999999999999998887776655  788999999988 99999


Q ss_pred             cCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784          373 IRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR  452 (501)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  452 (501)
                      ++..+.+      ..+.+|...+.++.++++ ++++|+.||.|++||+.+.+....+..+  ..|...+.++.+  ++++
T Consensus       204 ~~~~~~~------~~~~~~~~~v~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~  272 (342)
T d2ovrb2         204 VETGNCI------HTLTGHQSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGP--NKHQSAVTCLQF--NKNF  272 (342)
T ss_dssp             TTTCCEE------EEECCCCSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECST--TSCSSCEEEEEE--CSSE
T ss_pred             cccceee------eEecccccceeEEecCCC-EEEEEcCCCEEEEEeccccccccccccc--ceeeeceeeccc--CCCe
Confidence            9986654      888899999999998876 6667789999999999998887777432  234555555544  6679


Q ss_pred             EEEeecCCCceEEEeeccCCc--------------------------cceeecCCCCc----eeeecccC
Q 010784          453 IVTASYGEPGLLQFRDFSNAT--------------------------CPVLKHEVQND----SKFWGPQC  492 (501)
Q Consensus       453 l~s~~~d~~g~i~~w~~~~~~--------------------------~~~~s~~~d~~----~~~w~~~~  492 (501)
                      +++|+  .||.|++||+.+++                          ..+++|+.||+    +++|+++.
T Consensus       273 ~~s~s--~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         273 VITSS--DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEE--TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             eEEEc--CCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999  66999999976442                          23557777775    78888764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-31  Score=242.05  Aligned_cols=268  Identities=15%  Similarity=0.223  Sum_probs=209.8

Q ss_pred             cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCceeeeccCCCCceEEEEeeecCCCCC
Q 010784          143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~  222 (501)
                      .+++++++||.++|++++|+|                 |+||+.||+|++||...   ...+|...|.++.++     .+
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~-----------------l~sgs~Dg~v~~Wd~~~---~~~~h~~~V~~~~~~-----~~   57 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP-----------------LISGSYDGRIMEWSSSS---MHQDHSNLIVSLDNS-----KA   57 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT-----------------TEEEETTSCEEETTTTE---EECCCCSCEEEEECC-----ST
T ss_pred             cceeEEECCCCCceEEEEECc-----------------EEEEeCCCeEEEEECCC---CCCCCCCCEEEEEec-----CC
Confidence            478899999999999999964                 89999999999999433   235799999999985     45


Q ss_pred             CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc
Q 010784          223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM  302 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  302 (501)
                      ..+++++.|++|++|++....             ....+..+.+.+ ++..+++ +.++.+.+|+..+++.....     
T Consensus        58 ~~~~s~s~D~~v~~w~~~~~~-------------~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----  117 (287)
T d1pgua2          58 QEYSSISWDDTLKVNGITKHE-------------FGSQPKVASANN-DGFTAVL-TNDDDLLILQSFTGDIIKSV-----  117 (287)
T ss_dssp             TCCEEEETTTEEEETTEEEEE-------------CSSCEEEEEECS-SSEEEEE-ETTSEEEEEETTTCCEEEEE-----
T ss_pred             CeEEEEeeccccccccccccc-------------cccceeeeeecc-CCceEEE-eecccceeeeccceeeeeec-----
Confidence            678999999999999986532             123456677774 5555554 55677899999887654332     


Q ss_pred             eecCCCceeeecCCCeEEEEeCC--cEEEEEcCCCceEeeec-cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784          303 TSVPGVPVDMKCHESMLYIASGS--SVVTIDLRTMQKVMTPA-ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD  378 (501)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~  378 (501)
                       ........+...+...+++...  .+++|++...+....+. .|...+++++|+|++.+|++|+.++ |++||+.+++.
T Consensus       118 -~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~  196 (287)
T d1pgua2         118 -RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV  196 (287)
T ss_dssp             -ECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             -cccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccc
Confidence             3334455666677766666543  69999998777665554 4678899999999999999999888 99999998754


Q ss_pred             CCCCCCcccccCcccCeEEEEecCC-----------eEEEEecCCCcEEEEeCCC-cccccccccCCCCCCCcceeeeEe
Q 010784          379 AVKPQPMAELDGHVGSVTQLHMDPY-----------KIVTGGRDDLRINIWETDT-GMLANSLLCNYPEEADISTGCSAM  446 (501)
Q Consensus       379 ~~~~~~~~~~~~h~~~v~~l~~~~~-----------~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~  446 (501)
                      .     ...+.+|...|++++|+|.           .++++|+.|+.|++||+++ ++.+..+     .+|...|++++|
T Consensus       197 ~-----~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~-----~~h~~~V~~v~~  266 (287)
T d1pgua2         197 K-----TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-----NAHKDGVNNLLW  266 (287)
T ss_dssp             E-----ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-----TSSTTCEEEEEE
T ss_pred             c-----cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe-----CCCCCCeEEEEE
Confidence            3     2356789999999999873           5799999999999999977 4455555     578889999999


Q ss_pred             eccccEEEEeecCCCceEEEeec
Q 010784          447 AVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       447 s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      +|++ .|++++  .|+.|++|++
T Consensus       267 ~~~~-~l~s~g--~D~~v~iW~i  286 (287)
T d1pgua2         267 ETPS-TLVSSG--ADACIKRWNV  286 (287)
T ss_dssp             EETT-EEEEEE--TTSCEEEEEE
T ss_pred             CCCC-EEEEEE--CCCeEEEEEE
Confidence            9987 578888  5699999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.9e-32  Score=246.74  Aligned_cols=266  Identities=14%  Similarity=0.129  Sum_probs=204.0

Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC-ceEEec----CCceeeeccCC-CCceEEEEeeecCCCCCCEEEEe
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH-SIRLWW----KGSCQRCFKGH-NGPVSTLSDKLLGDGSGKILASG  228 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~i~vwd----~~~~~~~~~~h-~~~v~~l~~s~~~~~~~~~l~sg  228 (501)
                      .+++++|+|             +++.|+.++.+. .|+.|+    ....+..+.+| ...|++++|+|  ..++.+|++|
T Consensus        19 ~~t~l~~~~-------------~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP--~~~g~~lasg   83 (325)
T d1pgua1          19 FTTHLSYDP-------------TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP--IKGSQYLCSG   83 (325)
T ss_dssp             CCCCCEEET-------------TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECS--STTCCEEEEE
T ss_pred             CeEEEEECC-------------CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEee--CCCCCEEEEE
Confidence            467889998             788898876554 467787    23445667777 46899999973  3467899999


Q ss_pred             eCCCcEEEEeccCCCcccc--ccceeeccCCCCceeEEEEeecCCeEEEEEeC--CCeEEEEECCCCccccceeccccee
Q 010784          229 GEDATVRLWSLSSSGKRGQ--QALKATLYGHEKPIKLMSVAGHKSFLLVTISK--DSKVRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       229 ~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                      +.||+|++||+..+.....  ......+..|.++|.+++|++ ++.++++++.  ++.+++|+..+++            
T Consensus        84 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~------------  150 (325)
T d1pgua1          84 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGN------------  150 (325)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCC------------
T ss_pred             eCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccc------------
Confidence            9999999999987553211  112233567889999999997 6667766654  5678888877653            


Q ss_pred             cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcE-EEEEcCCc-EEEEecCCCCCCCCC
Q 010784          305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSL-ICTGGIGK-AMTWDIRRSQDAVKP  382 (501)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~d~-i~iwd~~~~~~~~~~  382 (501)
                                                      .+..+.+|...|.+++|+|++.+ +++++.|+ +++||....+..   
T Consensus       151 --------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~---  195 (325)
T d1pgua1         151 --------------------------------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS---  195 (325)
T ss_dssp             --------------------------------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE---
T ss_pred             --------------------------------cceeeeecccccccccccccccceEEEeecccccccccccccccc---
Confidence                                            34556779999999999998764 67788888 999999876543   


Q ss_pred             CCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEee---ccccEEEEee
Q 010784          383 QPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMA---VSGCRIVTAS  457 (501)
Q Consensus       383 ~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~s~~  457 (501)
                      ........|...|++++|+|+  .++++++.||.|++||+++++.+.++.     +|...+..+.|+   |+|++|++++
T Consensus       196 ~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-----~~~~~v~~~~~s~~~~dg~~l~s~s  270 (325)
T d1pgua1         196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-----DDQEPVQGGIFALSWLDSQKFATVG  270 (325)
T ss_dssp             EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-----BTTBCCCSCEEEEEESSSSEEEEEE
T ss_pred             eecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc-----ccccccccceeeeeccCCCEEEEEe
Confidence            223445677889999999997  888888999999999999999999994     455666666666   7899999999


Q ss_pred             cCCCceEEEeeccCCc------------------------cceeecCCCCceeeecc
Q 010784          458 YGEPGLLQFRDFSNAT------------------------CPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       458 ~d~~g~i~~w~~~~~~------------------------~~~~s~~~d~~~~~w~~  490 (501)
                        .|+.|++||+..++                        ..+++++.|+.+++|++
T Consensus       271 --~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         271 --ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             --TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             --CCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence              66999999965322                        34678899999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-32  Score=255.89  Aligned_cols=331  Identities=11%  Similarity=0.023  Sum_probs=223.5

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-----ccceecccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-----YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE  178 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-----~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~  178 (501)
                      .....|...|.++++++  .++++|+.|+.|+|||..+..     ........|...+..+.......      ....++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~   79 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE------RDAFEL   79 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEE------TTTEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeec------cCCCCC
Confidence            34456888899999875  589999999999999976531     11222234554443333221000      001145


Q ss_pred             cEEEEeeCCCceEEec--CCceee----------eccCCCCceEEEEeeecCC-CCCCEEEEeeCCCcEEEEeccCCCcc
Q 010784          179 NVLVTSSCDHSIRLWW--KGSCQR----------CFKGHNGPVSTLSDKLLGD-GSGKILASGGEDATVRLWSLSSSGKR  245 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd--~~~~~~----------~~~~h~~~v~~l~~s~~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~  245 (501)
                      .++++++.||.|++|+  ......          ....+...+..++|.+... ..+.++++++.||.+++|++......
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            6788999999999997  111110          1123556677788763211 23578999999999999998653320


Q ss_pred             c------------cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeee
Q 010784          246 G------------QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMK  313 (501)
Q Consensus       246 ~------------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (501)
                      .            ..........+...+.+++|+| ++ +|++|+.||.|++||+.+++.+....               
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~---------------  222 (393)
T d1sq9a_         160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFE---------------  222 (393)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEE---------------
T ss_pred             cceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccccc---------------
Confidence            0            0011222334566788999997 44 89999999999999999886533221               


Q ss_pred             cCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc----EEEEecCCCCCCC-------CC
Q 010784          314 CHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK----AMTWDIRRSQDAV-------KP  382 (501)
Q Consensus       314 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~----i~iwd~~~~~~~~-------~~  382 (501)
                                             ....+.+|...|.+++|+|+|++|++|+.|+    |++||+.+++...       ..
T Consensus       223 -----------------------~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~  279 (393)
T d1sq9a_         223 -----------------------SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS  279 (393)
T ss_dssp             -----------------------CCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----
T ss_pred             -----------------------cccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccc
Confidence                                   1234567899999999999999999999653    8999999875431       11


Q ss_pred             CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee----eeEeeccccEEEEee
Q 010784          383 QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG----CSAMAVSGCRIVTAS  457 (501)
Q Consensus       383 ~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~----~~~~s~~g~~l~s~~  457 (501)
                      .....+.+|.+.|++++|+|+ ++|++|+.|++|++||+.+++++.++.     +|...|.    .++|++++..+++++
T Consensus       280 ~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~-----gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN-----MHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             ----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-----CCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             cceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC-----CcCCcccCCccEEEECCCCCEEEEcc
Confidence            223445689999999999999 999999999999999999999999994     5555554    588999999887664


Q ss_pred             cCCCceEEEeecc-------CCccceeecCCCCceeeecc
Q 010784          458 YGEPGLLQFRDFS-------NATCPVLKHEVQNDSKFWGP  490 (501)
Q Consensus       458 ~d~~g~i~~w~~~-------~~~~~~~s~~~d~~~~~w~~  490 (501)
                      .   ..+++|.-.       .....+++.+.|+.+|+|.-
T Consensus       355 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         355 V---FDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             E---EEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             c---ceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence            2   234443321       12234678888999999964

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-31  Score=235.70  Aligned_cols=269  Identities=22%  Similarity=0.332  Sum_probs=208.2

Q ss_pred             ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784          108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD  187 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  187 (501)
                      .+...|+|+.+  ++.+||+|+.|+.|+|||+.++ ++++++.+|.+.|++++|.               +++|++|+.|
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~-~~~~~l~~H~~~V~~v~~~---------------~~~l~s~s~D   74 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQYD---------------ERVIITGSSD   74 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEECC---------------SSEEEEEETT
T ss_pred             CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCEeeeecc---------------cceeeccccc
Confidence            45566888655  6889999999999999999985 8899999999999999874               5899999999


Q ss_pred             CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784          188 HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS  265 (501)
Q Consensus       188 g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~  265 (501)
                      |.|++|+  .+........+........      .....++++..++.+++|+......   ......+..|...|..+.
T Consensus        75 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~  145 (293)
T d1p22a2          75 STVRVWDVNTGEMLNTLIHHCEAVLHLR------FNNGMMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVD  145 (293)
T ss_dssp             SCEEEEESSSCCEEEEECCCCSCEEEEE------CCTTEEEEEETTSCEEEEECSSSSC---CEEEEEECCCSSCEEEEE
T ss_pred             cccccccccccccccccccccccccccc------ccccceeecccccceeEeecccccc---ccccccccccccccccce
Confidence            9999999  4444444444444443333      4567899999999999999987653   123445677888888777


Q ss_pred             EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC
Q 010784          266 VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK  345 (501)
Q Consensus       266 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  345 (501)
                      +.+   ..+++++.|+.|++||+++++.                                            +..+.++.
T Consensus       146 ~~~---~~~~~~s~d~~i~~~d~~~~~~--------------------------------------------~~~~~~~~  178 (293)
T d1p22a2         146 FDD---KYIVSASGDRTIKVWNTSTCEF--------------------------------------------VRTLNGHK  178 (293)
T ss_dssp             EET---TEEEEEETTSEEEEEETTTCCE--------------------------------------------EEEEECCS
T ss_pred             ecc---cccccccCCCceeeecCCCCcE--------------------------------------------EEEEcccc
Confidence            753   4788999999999999987643                                            33455667


Q ss_pred             CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcc
Q 010784          346 PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGM  424 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~  424 (501)
                      ..+..+.++  +.++++++.|+ |++||+++.+.+      ..+.+|...+..+...+ .++++|+.||.|++||+.++.
T Consensus       179 ~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~v~~~~~~~-~~l~sg~~dg~i~iwd~~~~~  249 (293)
T d1p22a2         179 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACL------RVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLVAAL  249 (293)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE------EEECCCSSCEEEEECCS-SEEEEEETTSCEEEEEHHHHT
T ss_pred             cccccccCC--CCeEEEecCCCEEEEEecccceee------eeecccceeeeeccccc-eEEEEEcCCCEEEEEECCCCc
Confidence            777777764  56899999888 999999986654      77788888887654433 677777899999999986543


Q ss_pred             ---------cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          425 ---------LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       425 ---------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                               .+.++     .+|...|++++|  ++++|++|+  .||.|++||
T Consensus       250 ~~~~~~~~~~~~~~-----~~H~~~V~~v~~--d~~~l~s~s--~Dg~i~iWD  293 (293)
T d1p22a2         250 DPRAPAGTLCLRTL-----VEHSGRVFRLQF--DEFQIVSSS--HDDTILIWD  293 (293)
T ss_dssp             STTSCTTTTEEEEE-----CCCSSCCCCEEE--CSSCEEECC--SSSEEEEEC
T ss_pred             cccccCCceeeEEe-----cCCCCCEEEEEE--cCCEEEEEe--cCCEEEEeC
Confidence                     33444     567888999888  567899999  669999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.1e-30  Score=238.58  Aligned_cols=298  Identities=13%  Similarity=0.055  Sum_probs=213.0

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce---eeeccCCCCceEEEEeeecC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC---QRCFKGHNGPVSTLSDKLLG  218 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~---~~~~~~h~~~v~~l~~s~~~  218 (501)
                      +.+...++|.+.|++|+|+|             ++++|++|+.||+|+|||  .+..   +....+|.++|.+++|++  
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp-------------~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~--   66 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIP-------------SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID--   66 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEG-------------GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE--
T ss_pred             CeEEcCCCCCCCEEEEEEeC-------------CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeC--
Confidence            45677899999999999999             899999999999999998  3322   233346999999999983  


Q ss_pred             CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784          219 DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC  298 (501)
Q Consensus       219 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  298 (501)
                       .++.+|++|+.||.|++|++.....      ......+...+....+.+.+...+++++.++.+++||+++........
T Consensus        67 -~~~~~l~sg~~d~~v~~w~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~  139 (342)
T d1yfqa_          67 -NTDLQIYVGTVQGEILKVDLIGSPS------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             -SSSEEEEEEETTSCEEEECSSSSSS------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             -CCCCEEEEcccccceeeeecccccc------cccccccccccccccccccccccccccccccccceeeccccccceeee
Confidence             4567899999999999999988764      444444444443333333477899999999999999987654432211


Q ss_pred             ccc---ceecCCCceeeecCCCeEEEEe-CCcEEEEEcCCCceEe---eeccCCCcEEEEEEcC-CCcEEEEEcCCc-EE
Q 010784          299 CVG---MTSVPGVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVM---TPAICKPILHSFSIMP-SKSLICTGGIGK-AM  369 (501)
Q Consensus       299 ~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~---~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~  369 (501)
                      ...   ..........+.......+.++ ++.+++||++..+...   ....+...+.+..+.+ ++..+++++.++ +.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  219 (342)
T d1yfqa_         140 KNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA  219 (342)
T ss_dssp             EESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEE
T ss_pred             cccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEE
Confidence            111   1122223334455555555554 4589999998776543   2233445566666555 578888998888 99


Q ss_pred             EEecCCCCCCCCC---------CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCc
Q 010784          370 TWDIRRSQDAVKP---------QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADI  439 (501)
Q Consensus       370 iwd~~~~~~~~~~---------~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  439 (501)
                      +|+..........         .......+|...|++++|+|+ .+|++|+.||.|++||+.+++.+.++..      ..
T Consensus       220 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~------~~  293 (342)
T d1yfqa_         220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK------FN  293 (342)
T ss_dssp             EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC------CS
T ss_pred             EEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC------CC
Confidence            9998765433111         112233467778999999999 9999999999999999999999888842      23


Q ss_pred             ceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784          440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSN  471 (501)
Q Consensus       440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~  471 (501)
                      .+..++|+|+|+++++|+.  |+.+++|....
T Consensus       294 ~~~~~~~s~~~~~l~~a~s--dd~~~~~~~~~  323 (342)
T d1yfqa_         294 EDSVVKIACSDNILCLATS--DDTFKTNAAID  323 (342)
T ss_dssp             SSEEEEEEECSSEEEEEEE--CTHHHHCSSSC
T ss_pred             CCEEEEEEeCCCEEEEEEc--CCcEEEeeeeC
Confidence            4557889999999999984  47777776543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-28  Score=218.58  Aligned_cols=257  Identities=19%  Similarity=0.374  Sum_probs=200.2

Q ss_pred             ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784          144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS  221 (501)
Q Consensus       144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~  221 (501)
                      +.+....+|...|+|++|               ++++||||+.||+|+|||  +++++.++++|.+.|++++|      +
T Consensus         6 ~~i~~~~~~~~~V~c~~~---------------d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~------~   64 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY---------------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY------D   64 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC---------------CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC------C
T ss_pred             EEEeccCCCCCCEEEEEE---------------cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec------c
Confidence            344556788899999765               578999999999999999  78899999999999999986      5


Q ss_pred             CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784          222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG  301 (501)
Q Consensus       222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  301 (501)
                      +++|++|+.||.|++|++..+..      ......+.....  .+.+ ....++++..++.+.+||..+....       
T Consensus        65 ~~~l~s~s~D~~i~~~~~~~~~~------~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------  128 (293)
T d1p22a2          65 ERVIITGSSDSTVRVWDVNTGEM------LNTLIHHCEAVL--HLRF-NNGMMVTCSKDRSIAVWDMASPTDI-------  128 (293)
T ss_dssp             SSEEEEEETTSCEEEEESSSCCE------EEEECCCCSCEE--EEEC-CTTEEEEEETTSCEEEEECSSSSCC-------
T ss_pred             cceeecccccccccccccccccc------cccccccccccc--cccc-cccceeecccccceeEeeccccccc-------
Confidence            68999999999999999998763      333433333332  3333 4557889999999999998876421       


Q ss_pred             ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784          302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV  380 (501)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~  380 (501)
                                                        .....+..|...+..+.+.+  ..+++++.|+ |++||+++.+.. 
T Consensus       129 ----------------------------------~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~-  171 (293)
T d1p22a2         129 ----------------------------------TLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFV-  171 (293)
T ss_dssp             ----------------------------------EEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEE-
T ss_pred             ----------------------------------cccccccccccccccceecc--cccccccCCCceeeecCCCCcEE-
Confidence                                              12234455777888777754  4677888788 999999987654 


Q ss_pred             CCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC
Q 010784          381 KPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE  460 (501)
Q Consensus       381 ~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~  460 (501)
                           ..+.+|...+..+.+++.. +++++.||.|++||+++.+.+..+     .++...+.  .+++++.+|++|+  .
T Consensus       172 -----~~~~~~~~~v~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~--~~~~~~~~l~sg~--~  236 (293)
T d1p22a2         172 -----RTLNGHKRGIACLQYRDRL-VVSGSSDNTIRLWDIECGACLRVL-----EGHEELVR--CIRFDNKRIVSGA--Y  236 (293)
T ss_dssp             -----EEEECCSSCEEEEEEETTE-EEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEE--EEECCSSEEEEEE--T
T ss_pred             -----EEEcccccccccccCCCCe-EEEecCCCEEEEEecccceeeeee-----cccceeee--eccccceEEEEEc--C
Confidence                 7888888899998887764 555679999999999999988888     34455554  4677889999999  6


Q ss_pred             CceEEEeeccC----------------------------CccceeecCCCCceeeec
Q 010784          461 PGLLQFRDFSN----------------------------ATCPVLKHEVQNDSKFWG  489 (501)
Q Consensus       461 ~g~i~~w~~~~----------------------------~~~~~~s~~~d~~~~~w~  489 (501)
                      ||.|++||+..                            .+..+++++.|+++++||
T Consensus       237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            69999998431                            234578999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-29  Score=236.83  Aligned_cols=285  Identities=13%  Similarity=0.090  Sum_probs=194.7

Q ss_pred             eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc------eeeeccCCCCceEEEEee---
Q 010784          147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS------CQRCFKGHNGPVSTLSDK---  215 (501)
Q Consensus       147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~------~~~~~~~h~~~v~~l~~s---  215 (501)
                      ...++|.+.|.++++++               ++++||+.|++|+|||  +..      .......|...+..+...   
T Consensus         8 ~~~~~H~~~I~~v~~~~---------------~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN---------------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI   72 (393)
T ss_dssp             EESSCSSSCEEEEEECS---------------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC---------------CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeee
Confidence            45689999999999864               7999999999999998  221      111222344444333221   


Q ss_pred             ecCCCCCCEEEEeeCCCcEEEEeccCCCccccccc----eeeccCCCCceeEEEEeecC----CeEEEEEeCCCeEEEEE
Q 010784          216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQAL----KATLYGHEKPIKLMSVAGHK----SFLLVTISKDSKVRVWD  287 (501)
Q Consensus       216 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~v~~l~~~~~~----~~~l~s~s~dg~v~vwd  287 (501)
                      +....++.++++++.||.|++|++...........    ......+...+..+++.+..    +.++++++.||.+++|+
T Consensus        73 ~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~  152 (393)
T d1sq9a_          73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  152 (393)
T ss_dssp             ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             ccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEE
Confidence            11123345788999999999999876543111100    01112244566777777632    47899999999999999


Q ss_pred             CCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc
Q 010784          288 TSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK  367 (501)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~  367 (501)
                      +..............    ...                 ..+     .........+...+++++|+|++ +|++|+.|+
T Consensus       153 ~~~~~~~~~~~~~~~----~~~-----------------~~~-----~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg  205 (393)
T d1sq9a_         153 FHPFADESNSLTLNW----SPT-----------------LEL-----QGTVESPMTPSQFATSVDISERG-LIATGFNNG  205 (393)
T ss_dssp             EESSSSHHHHTTTCC----CCE-----------------EEE-----EEEECCSSSSCCCCCEEEECTTS-EEEEECTTS
T ss_pred             eecCCcccceeeeee----ccc-----------------eec-----ccceecccCCCCcEEEEEECCCC-EEEEEeCCC
Confidence            865432111000000    000                 000     01112223456678899999998 889999998


Q ss_pred             -EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCc---EEEEeCCCcccccccccC--------CC
Q 010784          368 -AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLR---INIWETDTGMLANSLLCN--------YP  434 (501)
Q Consensus       368 -i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~---i~iwd~~~~~~~~~~~~~--------~~  434 (501)
                       |++||+.+++..........+.+|..+|++++|+|+ ++|++|+.|++   |++||+.+++.+.++...        ..
T Consensus       206 ~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~  285 (393)
T d1sq9a_         206 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE  285 (393)
T ss_dssp             EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred             cEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeee
Confidence             999999987765334445677789999999999999 99999988874   999999999888877422        12


Q ss_pred             CCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784          435 EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       435 ~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      .+|...|++++|+|||++|++|+  .|++|++||+.+++..
T Consensus       286 ~gH~~~V~~l~fspd~~~l~S~s--~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         286 FAHSSWVMSLSFNDSGETLCSAG--WDGKLRFWDVKTKERI  324 (393)
T ss_dssp             BSBSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTTEEE
T ss_pred             ecccCceeeeccCCCCCeeEEEC--CCCEEEEEECCCCCEE
Confidence            47899999999999999999999  6699999999887643

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.9e-29  Score=227.25  Aligned_cols=286  Identities=9%  Similarity=0.024  Sum_probs=191.5

Q ss_pred             EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccc--cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY--YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      ..|...|++|+|+|++.+||+|+.|++|+|||+.++..  ......+|.++|.+++|+|+            ++.+|++|
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~------------~~~~l~sg   75 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN------------TDLQIYVG   75 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES------------SSEEEEEE
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC------------CCCEEEEc
Confidence            34566699999999999999999999999999876422  22333479999999999984            46789999


Q ss_pred             eCCCceEEec--CCceeeeccCCCCce-EEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC--CC
Q 010784          185 SCDHSIRLWW--KGSCQRCFKGHNGPV-STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH--EK  259 (501)
Q Consensus       185 ~~dg~i~vwd--~~~~~~~~~~h~~~v-~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~  259 (501)
                      +.||+|++|+  .+........+...+ ....+.    ++...+++++.++.+++||++.......  .......+  ..
T Consensus        76 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~wd~~~~~~~~~--~~~~~~~~~~~~  149 (342)
T d1yfqa_          76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICK----YGDDKLIAASWDGLIEVIDPRNYGDGVI--AVKNLNSNNTKV  149 (342)
T ss_dssp             ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEE----ETTTEEEEEETTSEEEEECHHHHTTBCE--EEEESCSSSSSS
T ss_pred             ccccceeeeecccccccccccccccccccccccc----cccccccccccccccceeecccccccee--eecccccccccc
Confidence            9999999999  444444444444333 333333    5778999999999999999976543111  12222222  22


Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeee---cCCCeEEEEe-CCcEEEEEcCCC
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMK---CHESMLYIAS-GSSVVTIDLRTM  335 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~i~~~d~~~~  335 (501)
                      ....+.+.+ .+..+++++.|+.|++||++..+.........  ..........   .........+ ++.+.+|+....
T Consensus       150 ~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~  226 (342)
T d1yfqa_         150 KNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES--GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             CCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEEC--SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             eeeeeeeec-cCCceeeecCCCcEEEEecccCcccceeeeec--ccccceeeeEeecCCCCEEEeecCCCeEEEEEecCC
Confidence            334555665 67789999999999999998776433222111  1111111211   1222333333 458888887543


Q ss_pred             ceE---------------eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEE
Q 010784          336 QKV---------------MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLH  399 (501)
Q Consensus       336 ~~~---------------~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~  399 (501)
                      ...               .....|...+++++|+|++.+|++|+.|+ |++||+.+++.+      .++..+ ..+..++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l------~~~~~~-~~~~~~~  299 (342)
T d1yfqa_         227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI------KNFAKF-NEDSVVK  299 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE------EECCCC-SSSEEEE
T ss_pred             cceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEE------EEecCC-CCCEEEE
Confidence            221               11234667899999999999999999999 999999987654      555432 2344455


Q ss_pred             ecCC-eEEEEecCCCcEEEEeC
Q 010784          400 MDPY-KIVTGGRDDLRINIWET  420 (501)
Q Consensus       400 ~~~~-~~l~~gs~dg~i~iwd~  420 (501)
                      ++|+ .++++++.|+.+++|..
T Consensus       300 ~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         300 IACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEECSSEEEEEEECTHHHHCSS
T ss_pred             EEeCCCEEEEEEcCCcEEEeee
Confidence            6666 56666667888887754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.2e-27  Score=213.30  Aligned_cols=264  Identities=15%  Similarity=0.152  Sum_probs=195.9

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ..+..|..+|++++|++    |++|+.||+|++||..++      ..+|...|.++++++              +..+++
T Consensus         7 ~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~------~~~h~~~V~~~~~~~--------------~~~~~s   62 (287)
T d1pgua2           7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM------HQDHSNLIVSLDNSK--------------AQEYSS   62 (287)
T ss_dssp             EEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE------ECCCCSCEEEEECCS--------------TTCCEE
T ss_pred             EEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC------CCCCCCCEEEEEecC--------------CCeEEE
Confidence            45778999999999998    899999999999998764      358999999999986              467899


Q ss_pred             eeCCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784          184 SSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       184 ~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  263 (501)
                      ++.|++|++|+....     .....+.++.++    +++..+++ +.++.+.+|+..++..      ...+.. ...+. 
T Consensus        63 ~s~D~~v~~w~~~~~-----~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~-~~~~~-  124 (287)
T d1pgua2          63 ISWDDTLKVNGITKH-----EFGSQPKVASAN----NDGFTAVL-TNDDDLLILQSFTGDI------IKSVRL-NSPGS-  124 (287)
T ss_dssp             EETTTEEEETTEEEE-----ECSSCEEEEEEC----SSSEEEEE-ETTSEEEEEETTTCCE------EEEEEC-SSCEE-
T ss_pred             Eeecccccccccccc-----ccccceeeeeec----cCCceEEE-eecccceeeeccceee------eeeccc-cceee-
Confidence            999999999982211     123456677775    56655555 4566788999888763      444443 33343 


Q ss_pred             EEEeecCCeEEEEEeCC-CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCceEe
Q 010784          264 MSVAGHKSFLLVTISKD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQKVM  339 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~  339 (501)
                       ++++ ++..+++++.+ +.+++|++...+.....    .....+.+.++.++++..+++++   +.+++||+.+++...
T Consensus       125 -~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~  198 (287)
T d1pgua2         125 -AVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDL----KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT  198 (287)
T ss_dssp             -EEEE-CSSEEEEEETTTSCEEEEETTEEEEEEEC----SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             -eeec-cCcceeeeccccceeeeeeccccceeeee----eeccCCceeEEEeccCccccccccccccccceeeccccccc
Confidence             4555 34456666655 57999998765432211    11344566777777776555443   489999999988764


Q ss_pred             -eeccCCCcEEEEEEcCC----------CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEE
Q 010784          340 -TPAICKPILHSFSIMPS----------KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVT  407 (501)
Q Consensus       340 -~~~~~~~~v~~v~~~~~----------~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~  407 (501)
                       .+..|...|.+++|+|.          +.++++|+.|+ |++||++++..     .+..+.+|...|++++|+|+..++
T Consensus       199 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~-----~~~~~~~h~~~V~~v~~~~~~~l~  273 (287)
T d1pgua2         199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK-----IIKALNAHKDGVNNLLWETPSTLV  273 (287)
T ss_dssp             CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC-----CEEETTSSTTCEEEEEEEETTEEE
T ss_pred             ccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe-----EEEEeCCCCCCeEEEEECCCCEEE
Confidence             46789999999999874          56899999988 99999987542     357778999999999999993345


Q ss_pred             EecCCCcEEEEeC
Q 010784          408 GGRDDLRINIWET  420 (501)
Q Consensus       408 ~gs~dg~i~iwd~  420 (501)
                      +++.||.|++|++
T Consensus       274 s~g~D~~v~iW~i  286 (287)
T d1pgua2         274 SSGADACIKRWNV  286 (287)
T ss_dssp             EEETTSCEEEEEE
T ss_pred             EEECCCeEEEEEE
Confidence            5569999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.3e-27  Score=222.12  Aligned_cols=276  Identities=9%  Similarity=0.017  Sum_probs=198.2

Q ss_pred             eEEeeC-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC--ceE
Q 010784          115 HILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH--SIR  191 (501)
Q Consensus       115 ~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~i~  191 (501)
                      .-.||| ||+++|+++. +.+.+||...+ ..++ + +|...|.+++|+|             ||++|++++.+.  .|+
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~-~~~~-~-~~~~~v~~~~~sp-------------Dg~~l~~~~~~~g~~v~   69 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGT-YVLK-V-PEPLRIRYVRRGG-------------DTKVAFIHGTREGDFLG   69 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSS-BEEE-C-SCCSCEEEEEECS-------------SSEEEEEEEETTEEEEE
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCC-cEEE-c-cCCCCEEEEEECC-------------CCCEEEEEEcCCCCEEE
Confidence            456899 9999998865 78999999864 4444 3 7999999999999             889988776553  799


Q ss_pred             Eec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784          192 LWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK  270 (501)
Q Consensus       192 vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  270 (501)
                      +|| .+.....+..|...|.+++|+    |++++|++++.++.+++|++.++.      ....+..|...+.+++|+| +
T Consensus        70 v~d~~~~~~~~~~~~~~~v~~~~~s----pdg~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~sp-d  138 (360)
T d1k32a3          70 IYDYRTGKAEKFEENLGNVFAMGVD----RNGKFAVVANDRFEIMTVDLETGK------PTVIERSREAMITDFTISD-N  138 (360)
T ss_dssp             EEETTTCCEEECCCCCCSEEEEEEC----TTSSEEEEEETTSEEEEEETTTCC------EEEEEECSSSCCCCEEECT-T
T ss_pred             EEECCCCcEEEeeCCCceEEeeeec----ccccccceeccccccccccccccc------eeeeeecccccccchhhcc-c
Confidence            999 666677788899999999997    899999999999999999999876      4677788889999999998 6


Q ss_pred             CeEEEEEeC----------CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEee
Q 010784          271 SFLLVTISK----------DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMT  340 (501)
Q Consensus       271 ~~~l~s~s~----------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  340 (501)
                      +++|+.++.          ++.+++||+.+++                                            .. .
T Consensus       139 g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~--------------------------------------------~~-~  173 (360)
T d1k32a3         139 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--------------------------------------------IF-A  173 (360)
T ss_dssp             SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--------------------------------------------EE-E
T ss_pred             eeeeeeeccccccceeeccccceeeeccccCc--------------------------------------------ee-e
Confidence            777776542          3345566655542                                            22 2


Q ss_pred             eccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCC--------------C-----------------------
Q 010784          341 PAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVK--------------P-----------------------  382 (501)
Q Consensus       341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~--------------~-----------------------  382 (501)
                      ...+...+..++|+|+|++|++++.++ +++||.........              .                       
T Consensus       174 ~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  253 (360)
T d1k32a3         174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY  253 (360)
T ss_dssp             CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred             ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccc
Confidence            223456667777777777777777666 77776543211000              0                       


Q ss_pred             CCc----------ccccCcccCeEEEEec---CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784          383 QPM----------AELDGHVGSVTQLHMD---PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV  448 (501)
Q Consensus       383 ~~~----------~~~~~h~~~v~~l~~~---~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  448 (501)
                      ..+          ..+..+.+.+..+.+.   +. .++++++.++.|++||+.+++.. .+        ...|..++|||
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~--------~~~v~~~~~Sp  324 (360)
T d1k32a3         254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EV--------KNNLTDLRLSA  324 (360)
T ss_dssp             GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EE--------EEEEEEEEECT
T ss_pred             cceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-Ee--------cCCcCEEEECC
Confidence            000          0111111222222222   22 45566678899999999886542 22        35689999999


Q ss_pred             cccEEEEeecCCCceEEEeeccCCcc
Q 010784          449 SGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       449 ~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      ||++|++++  .||.|++||+..++.
T Consensus       325 DG~~l~~~~--~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         325 DRKTVMVRK--DDGKIYTFPLEKPED  348 (360)
T ss_dssp             TSCEEEEEE--TTSCEEEEESSCTTS
T ss_pred             CCCEEEEEE--CCCeEEEEECCCCCc
Confidence            999999999  679999999987765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=4.8e-26  Score=216.46  Aligned_cols=329  Identities=10%  Similarity=-0.006  Sum_probs=213.9

Q ss_pred             eeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C
Q 010784          118 LDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K  195 (501)
Q Consensus       118 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~  195 (501)
                      .++.+.++++.+.|+.|+|||..++ +.+.++..|. .+..++|+|             ||+++++++.||+|++||  +
T Consensus        28 ~d~~~~~~V~~~~dg~v~vwD~~t~-~~~~~l~~g~-~~~~vafSP-------------DGk~l~~~~~d~~v~vwd~~t   92 (426)
T d1hzua2          28 LDLPNLFSVTLRDAGQIALVDGDSK-KIVKVIDTGY-AVHISRMSA-------------SGRYLLVIGRDARIDMIDLWA   92 (426)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTC-SEEEEEECCS-SEEEEEECT-------------TSCEEEEEETTSEEEEEETTS
T ss_pred             CCCCeEEEEEEcCCCEEEEEECCCC-cEEEEEeCCC-CeeEEEECC-------------CCCEEEEEeCCCCEEEEEccC
Confidence            3456677899999999999999995 8888998875 589999999             899999999999999999  4


Q ss_pred             Cceee--ec---cCCCCceEEEEeeecCCCCCCEEEE-eeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784          196 GSCQR--CF---KGHNGPVSTLSDKLLGDGSGKILAS-GGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH  269 (501)
Q Consensus       196 ~~~~~--~~---~~h~~~v~~l~~s~~~~~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  269 (501)
                      ++...  .+   .+|.+.+.+++|    .|+|+++++ +..++.+++||..++.      +......|...+....+.+.
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~----spDG~~l~v~~~~~~~v~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~  162 (426)
T d1hzua2          93 KEPTKVAEIKIGIEARSVESSKFK----GYEDRYTIAGAYWPPQFAIMDGETLE------PKQIVSTRGMTVDTQTYHPE  162 (426)
T ss_dssp             SSCEEEEEEECCSEEEEEEECCST----TCTTTEEEEEEEESSEEEEEETTTCC------EEEEEECCEECSSSCCEESC
T ss_pred             CceeEEEEEeCCCCCcceEEeeee----cCCCCEEEEeecCCCeEEEEcCCccc------eeEEeeccCCCccceeecCC
Confidence            54332  22   244444555555    489998754 4588999999999876      35555555544444444433


Q ss_pred             CCeEEEEEeCCCe-----------EEEEECCCCccccceecccceecCCCceeeecCCCe--EEEEeC--CcEEEEEcCC
Q 010784          270 KSFLLVTISKDSK-----------VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIASG--SSVVTIDLRT  334 (501)
Q Consensus       270 ~~~~l~s~s~dg~-----------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~i~~~d~~~  334 (501)
                      .....++++.|+.           +.+++........    .........+..+.+.++.  ++++..  ..+.+++..+
T Consensus       163 ~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~  238 (426)
T d1hzua2         163 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT----VTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD  238 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCE----EEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEecccccee----eEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence            3333344444444           4444433332111    1112344455566665544  444443  3789999999


Q ss_pred             CceEeeeccC--CCcEEEEEEcCC--CcEEE-EEcCCc-EEEEecCCCCCC-CCCCCcccccCcccCeEEEEecCC-eEE
Q 010784          335 MQKVMTPAIC--KPILHSFSIMPS--KSLIC-TGGIGK-AMTWDIRRSQDA-VKPQPMAELDGHVGSVTQLHMDPY-KIV  406 (501)
Q Consensus       335 ~~~~~~~~~~--~~~v~~v~~~~~--~~~l~-~~~~d~-i~iwd~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~-~~l  406 (501)
                      ++.+......  ........+...  +...+ ..+.++ +.+|+....... ...+...++.+|...+..++++|+ +.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l  318 (426)
T d1hzua2         239 RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL  318 (426)
T ss_dssp             TEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEE
T ss_pred             ccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceE
Confidence            9887665532  222222333222  22222 233455 888877654221 112445778899999999999999 776


Q ss_pred             E-------EecCCCcEEEEeCCCcccccccccC----CCCCCCcceeeeEeeccccEEEEee---cCCCceEEEeeccCC
Q 010784          407 T-------GGRDDLRINIWETDTGMLANSLLCN----YPEEADISTGCSAMAVSGCRIVTAS---YGEPGLLQFRDFSNA  472 (501)
Q Consensus       407 ~-------~gs~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~s~~---~d~~g~i~~w~~~~~  472 (501)
                      +       +++.|++|+|||+.+++...++...    ....+...+..++|||||++++.++   .+.+|.|++||..+.
T Consensus       319 ~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~  398 (426)
T d1hzua2         319 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL  398 (426)
T ss_dssp             EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred             EEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence            6       4556889999999998877655211    1134566788999999999775432   236799999998887


Q ss_pred             ccc
Q 010784          473 TCP  475 (501)
Q Consensus       473 ~~~  475 (501)
                      +..
T Consensus       399 k~~  401 (426)
T d1hzua2         399 KLK  401 (426)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.7e-25  Score=207.57  Aligned_cols=286  Identities=9%  Similarity=0.024  Sum_probs=205.7

Q ss_pred             EecCCCCceEEeeCCcEEEeecCC--eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784          107 YSVAKPHDHILLDNNDIFSTQGSS--IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS  184 (501)
Q Consensus       107 ~~~~~~i~~~~~~~~~~~~~~g~~--d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~  184 (501)
                      ..|...|.+++|+|||++|++++.  ...+.+||.+++  ....+.+|...|.+++|+|             ++++|+++
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~--~~~~~~~~~~~v~~~~~sp-------------dg~~l~~~  103 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG--KAEKFEENLGNVFAMGVDR-------------NGKFAVVA  103 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC--CEEECCCCCCSEEEEEECT-------------TSSEEEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC--cEEEeeCCCceEEeeeecc-------------ccccccee
Confidence            356777999999999999986654  358999999864  4556789999999999999             89999999


Q ss_pred             eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe----------eCCCcEEEEeccCCCcccccccee
Q 010784          185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG----------GEDATVRLWSLSSSGKRGQQALKA  252 (501)
Q Consensus       185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg----------~~dg~i~iwd~~~~~~~~~~~~~~  252 (501)
                      +.++.+++|+  .++....+..|...+.+++|+    ++|++|+.+          ..++.+++||+.+++       ..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-------~~  172 (360)
T d1k32a3         104 NDRFEIMTVDLETGKPTVIERSREAMITDFTIS----DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-------IF  172 (360)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC----TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-------EE
T ss_pred             ccccccccccccccceeeeeecccccccchhhc----cceeeeeeeccccccceeeccccceeeeccccCc-------ee
Confidence            9999999998  667777888899999999997    899999854          345679999998865       34


Q ss_pred             eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec-ccce-ecCCCceeeecCCCeEEEEeC------
Q 010784          253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC-VGMT-SVPGVPVDMKCHESMLYIASG------  324 (501)
Q Consensus       253 ~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~------  324 (501)
                      .+..+...+..+.|+| +++.|++++.++.+.+||............ .... ........+.+.++...+..+      
T Consensus       173 ~~~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  251 (360)
T d1k32a3         173 AATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND  251 (360)
T ss_dssp             ECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTT
T ss_pred             eecccccccccccccC-CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecc
Confidence            5556778888999998 788999999999999999876543211100 0000 111112222222222222111      


Q ss_pred             C--cEEEEEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784          325 S--SVVTIDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL  398 (501)
Q Consensus       325 ~--~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  398 (501)
                      .  .+..++...+.. ..+..+.+.+..+.+.+.   +.++++++.++ |++||+.+++          ...|.+.|.++
T Consensus       252 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~v~~~  320 (360)
T d1k32a3         252 MYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----------VTEVKNNLTDL  320 (360)
T ss_dssp             GGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC----------EEEEEEEEEEE
T ss_pred             cccceeecccCcCce-eEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe----------EEEecCCcCEE
Confidence            1  233333333332 233344555555555544   44677788888 9999998743          23456679999


Q ss_pred             EecCC-eEEEEecCCCcEEEEeCCCcccccccc
Q 010784          399 HMDPY-KIVTGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                      +|+|+ +.|++++.||.|++||+.+++...++.
T Consensus       321 ~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         321 RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             EECTTSCEEEEEETTSCEEEEESSCTTSCEECC
T ss_pred             EECCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence            99999 888888899999999999998887773

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=2.9e-23  Score=196.58  Aligned_cols=318  Identities=10%  Similarity=-0.038  Sum_probs=216.0

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccc-c---ceecccCCcceeEEEeeccCcCcccccCCCCcCcEE-EE
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY-Y---RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL-VT  183 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~-~---~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l-~s  183 (501)
                      ....+..++|+|||+++++++.|+.+++||+.++.. .   +....+|.+.+.+..|+|             ||++| ++
T Consensus        60 ~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp-------------DG~~l~vs  126 (432)
T d1qksa2          60 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-------------EDKYAIAG  126 (432)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-------------TTTEEEEE
T ss_pred             CCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC-------------CCCEEEEE
Confidence            345689999999999999999999999999987532 1   222345555566666666             89875 78


Q ss_pred             eeCCCceEEec--CCceeeeccC-----------CCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCcccccc
Q 010784          184 SSCDHSIRLWW--KGSCQRCFKG-----------HNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQA  249 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~~~~~~~~-----------h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~  249 (501)
                      ++.+++|++||  +++.+..+..           +......+.++    +++..+ ++...++.|.+||..+.+.     
T Consensus       127 ~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s----~dg~~~~vs~~~~~~i~~~d~~~~~~-----  197 (432)
T d1qksa2         127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS----HYRPEFIVNVKETGKILLVDYTDLNN-----  197 (432)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC----SSSSEEEEEETTTTEEEEEETTCSSE-----
T ss_pred             cCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEEC----CCCCEEEEEEccCCeEEEEEccCCCc-----
Confidence            88899999999  6666665543           34455667776    666654 5667789999999887653     


Q ss_pred             ceeeccCCCCceeEEEEeecCCeEEEEEe-CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe----C
Q 010784          250 LKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS----G  324 (501)
Q Consensus       250 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  324 (501)
                      .....-.+...+..+.++| +++++++++ .++.+.++|..+++.............................+.    .
T Consensus       198 ~~~~~i~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~  276 (432)
T d1qksa2         198 LKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD  276 (432)
T ss_dssp             EEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS
T ss_pred             ceEEEEcccCccccceECC-CCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCC
Confidence            1111223556788999998 566555554 567899999988766543332222222222222222222222221    2


Q ss_pred             CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC
Q 010784          325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY  403 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  403 (501)
                      ..+.+|+.....    ...|...+....++|++..+++++.+. .++|+.....            .|.....++++ |+
T Consensus       277 ~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------------~~~~~~~sv~v-pD  339 (432)
T d1qksa2         277 DSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------------PEAEISGSVAV-FD  339 (432)
T ss_dssp             SEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------------SSHHHHTCEEE-EE
T ss_pred             ceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------------CCCCeeeEEEE-Ee
Confidence            367777765442    344667789999999999888888777 9999865432            23433445554 78


Q ss_pred             -eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec---CCCceEEEeeccCCcc
Q 010784          404 -KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY---GEPGLLQFRDFSNATC  474 (501)
Q Consensus       404 -~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~---d~~g~i~~w~~~~~~~  474 (501)
                       +.+++++.|+.+++|++.++.   .+     ..|...+..++|||||++++.+..   +.+|.|.+||-.+.+.
T Consensus       340 g~~la~~s~d~~~k~w~~~~~~---~l-----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         340 IKAMTGDGSDPEFKTLPIAEWA---GI-----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             GGGCCCSSSCCCEEEECHHHHH---TC-----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             chhhcccccCCceEeccccccc---cc-----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence             888888999999999986553   23     234567889999999998866543   3578999999887765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=4.9e-23  Score=195.44  Aligned_cols=317  Identities=11%  Similarity=0.008  Sum_probs=201.3

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEeccccccc----ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE-E
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYY----RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV-T  183 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~----~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~-s  183 (501)
                      ....+..++|+|||+++++++.|+.+++||+.++...    +....+|.+.+.+++|+|             ||++++ +
T Consensus        60 ~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp-------------DG~~l~v~  126 (426)
T d1hzua2          60 TGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY-------------EDRYTIAG  126 (426)
T ss_dssp             CCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC-------------TTTEEEEE
T ss_pred             CCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC-------------CCCEEEEe
Confidence            3456899999999999999999999999999886311    122345666666666766             888764 5


Q ss_pred             eeCCCceEEec--CCceeeeccCCCCceEEEEeeec-------CCCCCCEEEEee-CCCcEEEEeccCCCccccccceee
Q 010784          184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLL-------GDGSGKILASGG-EDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~-------~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      +..++.+++||  .+.++..+..|...+..+.+.+.       ..+++..++... ..+.+.+++......     ....
T Consensus       127 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~  201 (426)
T d1hzua2         127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-----LTVT  201 (426)
T ss_dssp             EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS-----CEEE
T ss_pred             ecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc-----eeeE
Confidence            55889999999  66666666655554444333200       013333333322 223444444443332     2333


Q ss_pred             ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe-EEEEe---CCcEEE
Q 010784          254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIAS---GSSVVT  329 (501)
Q Consensus       254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~i~~  329 (501)
                      ...+...+..+.++|.+..++++...+..+.+++..+++.+......... .............. .....   .+.+.+
T Consensus       202 ~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~~  280 (426)
T d1hzua2         202 SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP-HPGRGANFVHPKYGPVWSTSHLGDGSISL  280 (426)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCC-CCSCCEEEEETTTEEEEEEECTTTCEEEE
T ss_pred             EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcc-cccceeeeecCCCCceEEeccCCCceEEE
Confidence            44577788899999855545555567788999999988765443322111 11111112222222 22222   235666


Q ss_pred             EEcCC-------CceEeeeccCCCcEEEEEEcCCCcEEEE-------EcCCc-EEEEecCCCCCCCCCCCcc---cccCc
Q 010784          330 IDLRT-------MQKVMTPAICKPILHSFSIMPSKSLICT-------GGIGK-AMTWDIRRSQDAVKPQPMA---ELDGH  391 (501)
Q Consensus       330 ~d~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~l~~-------~~~d~-i~iwd~~~~~~~~~~~~~~---~~~~h  391 (501)
                      ++...       .+....+.+|...+..++|+|++++|++       ++.++ |++||+.+++...+..++.   .+..|
T Consensus       281 ~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~  360 (426)
T d1hzua2         281 IGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG  360 (426)
T ss_dssp             EECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred             eeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCC
Confidence            66543       4677889999999999999999999995       44456 9999999987651111111   23345


Q ss_pred             ccCeEEEEecCC-e-EEEEe----cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784          392 VGSVTQLHMDPY-K-IVTGG----RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT  455 (501)
Q Consensus       392 ~~~v~~l~~~~~-~-~l~~g----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  455 (501)
                      ...|.+++|+|+ + +++++    +.+|.|+|||..++++...+...     .      .++|+|++-+.
T Consensus       361 ~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~-----~------~~tp~Gk~~~~  419 (426)
T d1hzua2         361 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP-----R------LITPTGKFNVY  419 (426)
T ss_dssp             CCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT-----T------CCSEEEEEEHH
T ss_pred             CccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCC-----C------ccCCCceEeEe
Confidence            667999999999 4 54543    46889999999999998888422     1      44688887554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=1.9e-22  Score=190.88  Aligned_cols=304  Identities=10%  Similarity=-0.046  Sum_probs=215.2

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      ......+.+..++++.+.++.|.|||..++ +++..+..|. .+..++|+|             ||+++++++.||+|++
T Consensus        23 ~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~-~v~~~~~~g~-~~~~v~fSp-------------DG~~l~~~s~dg~v~~   87 (432)
T d1qksa2          23 QQMNDWDLENLFSVTLRDAGQIALIDGSTY-EIKTVLDTGY-AVHISRLSA-------------SGRYLFVIGRDGKVNM   87 (432)
T ss_dssp             SCCSCCCGGGEEEEEETTTTEEEEEETTTC-CEEEEEECSS-CEEEEEECT-------------TSCEEEEEETTSEEEE
T ss_pred             ceeecCCCCcEEEEEEcCCCEEEEEECCCC-cEEEEEeCCC-CeeEEEECC-------------CCCEEEEEcCCCCEEE
Confidence            334455667788899999999999999995 8888888774 699999999             8999999999999999


Q ss_pred             ec--CCce--eeec---cCCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeeccC--------
Q 010784          193 WW--KGSC--QRCF---KGHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATLYG--------  256 (501)
Q Consensus       193 wd--~~~~--~~~~---~~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------  256 (501)
                      ||  +++.  +..+   ..|.+.+.+..|    ++||++| ++++.++.|++||..+++.      +..+..        
T Consensus        88 ~d~~t~~~~~~~~i~~~~~~~~~~~s~~~----SpDG~~l~vs~~~~~~v~i~d~~t~~~------~~~~~~~~~~~~~~  157 (432)
T d1qksa2          88 IDLWMKEPTTVAEIKIGSEARSIETSKME----GWEDKYAIAGAYWPPQYVIMDGETLEP------KKIQSTRGMTYDEQ  157 (432)
T ss_dssp             EETTSSSCCEEEEEECCSEEEEEEECCST----TCTTTEEEEEEEETTEEEEEETTTCCE------EEEEECCEECTTTC
T ss_pred             EEeeCCCceEEEEEecCCCCCCeEEeccc----CCCCCEEEEEcCCCCeEEEEeCccccc------eeeeccCCccccce
Confidence            99  4442  2222   234444444444    5899976 6788899999999998763      333322        


Q ss_pred             ---CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE--EEEeC--CcEEE
Q 010784          257 ---HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML--YIASG--SSVVT  329 (501)
Q Consensus       257 ---~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~i~~  329 (501)
                         +......+.+++.+...+++...++.|.+||..+.+....    ........+..+.++++..  +++..  ..+.+
T Consensus       158 ~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~----~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v  233 (432)
T d1qksa2         158 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT----TEISAERFLHDGGLDGSHRYFITAANARNKLVV  233 (432)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE----EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred             eccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceE----EEEcccCccccceECCCCCEEEEeccccceEEE
Confidence               3445667888885556667788889999999987654321    1123344556667776654  44443  37999


Q ss_pred             EEcCCCceEeeecc-----CCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784          330 IDLRTMQKVMTPAI-----CKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP  402 (501)
Q Consensus       330 ~d~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  402 (501)
                      +|..+++.+..+..     |........+...+...++.. .++ |.+|+....          ....|...+....++|
T Consensus       234 ~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~----------~~~~~~~~v~~~~~~~  303 (432)
T d1qksa2         234 IDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE----------GHPDNAWKILDSFPAL  303 (432)
T ss_dssp             EETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT----------TCTTTBTSEEEEEECS
T ss_pred             eecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc----------cccccccEEEEEEEcC
Confidence            99999888765543     334445555655566666665 345 999987652          3445677889999999


Q ss_pred             C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784          403 Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF  469 (501)
Q Consensus       403 ~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~  469 (501)
                      + ..+++++.++..++|+..+...           |......+++ ||++.+++++  .|+.+++|++
T Consensus       304 ~g~~~~~~s~p~~~~lw~~~~~~~-----------~~~~~~sv~v-pDg~~la~~s--~d~~~k~w~~  357 (432)
T d1qksa2         304 GGGSLFIKTHPNSQYLYVDATLNP-----------EAEISGSVAV-FDIKAMTGDG--SDPEFKTLPI  357 (432)
T ss_dssp             CSCCCCEECCTTCSEEEEECTTCS-----------SHHHHTCEEE-EEGGGCCCSS--SCCCEEEECH
T ss_pred             CCCeEEEEecCCccceeecccCCC-----------CCCeeeEEEE-Eechhhcccc--cCCceEeccc
Confidence            8 6666777899999998654332           2223345554 9999999999  5699999984

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=4.5e-21  Score=172.65  Aligned_cols=263  Identities=13%  Similarity=0.105  Sum_probs=193.5

Q ss_pred             EeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE-EEeeCCCceEEec--CCceeee
Q 010784          125 STQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL-VTSSCDHSIRLWW--KGSCQRC  201 (501)
Q Consensus       125 ~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vwd--~~~~~~~  201 (501)
                      .++++.++.|.+||+.++ +.++++... ..+..++|+|             +|++| ++++.++.|++||  +++.+..
T Consensus         5 yV~~~~~~~v~v~D~~t~-~~~~~i~~g-~~p~~va~sp-------------dG~~l~v~~~~~~~i~v~d~~t~~~~~~   69 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSN-KVTATIPVG-SNPMGAVISP-------------DGTKVYVANAHSNDVSIIDTATNNVIAT   69 (301)
T ss_dssp             EEEETTTTEEEEEETTTT-EEEEEEECS-SSEEEEEECT-------------TSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEEECCCCEEEEEECCCC-eEEEEEECC-CCceEEEEeC-------------CCCEEEEEECCCCEEEEEECCCCceeee
Confidence            356778899999999985 777777654 4578999999             78876 5777899999999  7778888


Q ss_pred             ccCCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC
Q 010784          202 FKGHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD  280 (501)
Q Consensus       202 ~~~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d  280 (501)
                      +..+.. +..+.|+    +++..+ +++..++.+.+|+..++.      ....+.. .....++.++|++...++++..+
T Consensus        70 ~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~  137 (301)
T d1l0qa2          70 VPAGSS-PQGVAVS----PDGKQVYVTNMASSTLSVIDTTSNT------VAGTVKT-GKSPLGLALSPDGKKLYVTNNGD  137 (301)
T ss_dssp             EECSSS-EEEEEEC----TTSSEEEEEETTTTEEEEEETTTTE------EEEEEEC-SSSEEEEEECTTSSEEEEEETTT
T ss_pred             eecccc-ccccccc----cccccccccccccceeeecccccce------eeeeccc-cccceEEEeecCCCeeeeeeccc
Confidence            876654 5788886    666654 556677899999998875      3555554 44567889998555566777788


Q ss_pred             CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784          281 SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI  360 (501)
Q Consensus       281 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l  360 (501)
                      +.+.+|+..+.+...                                            .+. +...+..+.++|++..+
T Consensus       138 ~~~~~~~~~~~~~~~--------------------------------------------~~~-~~~~~~~~~~~~~~~~~  172 (301)
T d1l0qa2         138 KTVSVINTVTKAVIN--------------------------------------------TVS-VGRSPKGIAVTPDGTKV  172 (301)
T ss_dssp             TEEEEEETTTTEEEE--------------------------------------------EEE-CCSSEEEEEECTTSSEE
T ss_pred             cceeeeeccccceee--------------------------------------------ecc-cCCCceEEEeeccccce
Confidence            999999988774322                                            122 24457789999998888


Q ss_pred             EEEcCC-c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEe--cCCCcEEEEeCCCcccccccccCCC
Q 010784          361 CTGGIG-K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGG--RDDLRINIWETDTGMLANSLLCNYP  434 (501)
Q Consensus       361 ~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~g--s~dg~i~iwd~~~~~~~~~~~~~~~  434 (501)
                      ++++.+ . +.+|+....+..      ..+.. ...+..++++++  .+++++  ..++.|++||+.+++.+..+..   
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~---  242 (301)
T d1l0qa2         173 YVANFDSMSISVIDTVTNSVI------DTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---  242 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEE------EEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---
T ss_pred             eeecccccccccccccceeee------ecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC---
Confidence            777754 4 778887765432      33333 345678889888  443332  3457899999999998888742   


Q ss_pred             CCCCcceeeeEeeccccEEE-EeecCCCceEEEeeccCCcc
Q 010784          435 EEADISTGCSAMAVSGCRIV-TASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       435 ~~~~~~v~~~~~s~~g~~l~-s~~~d~~g~i~~w~~~~~~~  474 (501)
                         ...+..++|+|||++|+ +++  .++.|++||+.+++.
T Consensus       243 ---~~~~~~va~spdg~~l~va~~--~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         243 ---GPDPAGIAVTPDGKKVYVALS--FCNTVSVIDTATNTI  278 (301)
T ss_dssp             ---CSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEE
T ss_pred             ---CCCEEEEEEeCCCCEEEEEEC--CCCeEEEEECCCCeE
Confidence               34578999999999875 555  679999999988754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=3.4e-21  Score=177.09  Aligned_cols=274  Identities=8%  Similarity=0.022  Sum_probs=191.4

Q ss_pred             CCCCcCcEEEEeeCCCceEEec--CCceeeecc-CCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccc
Q 010784          173 EPQRTENVLVTSSCDHSIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       173 ~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~  248 (501)
                      ++++++++|++++.|++|.+||  +++.+.+++ .|...+.+++|+    |+|+++ +++..++.|.+||+.+++.    
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~s----pDG~~l~v~~~~~~~v~~~d~~t~~~----   74 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA----PDNRTAYVLNNHYGDIYGIDLDTCKN----   74 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC----TTSSEEEEEETTTTEEEEEETTTTEE----
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEEC----CCCCEEEEEECCCCcEEEEeCccCee----
Confidence            3455999999999999999999  778888776 456678899997    899887 5566789999999998763    


Q ss_pred             cceeeccCC------CCceeEEEEeecCCeEEEEEe------------CCCeEEEEECCCCccccceecccceecCCCce
Q 010784          249 ALKATLYGH------EKPIKLMSVAGHKSFLLVTIS------------KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV  310 (501)
Q Consensus       249 ~~~~~~~~~------~~~v~~l~~~~~~~~~l~s~s------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  310 (501)
                        +..+...      ...+..++++| +++++++++            .++.+.+||..+++......   .........
T Consensus        75 --~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~  148 (346)
T d1jmxb_          75 --TFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR---TFPMPRQVY  148 (346)
T ss_dssp             --EEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE---EEECCSSCC
T ss_pred             --eeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE---eeeccCceE
Confidence              3333221      22356788997 666666654            46788999988775433221   112223334


Q ss_pred             eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcE--------------------------EEEEc
Q 010784          311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSL--------------------------ICTGG  364 (501)
Q Consensus       311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~--------------------------l~~~~  364 (501)
                      .+...++..+++.+..+.+|++.+++.+..+..+. ....+.++|++..                          ++++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (346)
T d1jmxb_         149 LMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD  227 (346)
T ss_dssp             CEEECTTSCEEEESSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred             EEEecCCCEEEEeCCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeecc
Confidence            44455666666777889999999988887766432 2233334444332                          22333


Q ss_pred             CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784          365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG  442 (501)
Q Consensus       365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  442 (501)
                      .+. +.+||+.++...     ......|...+..+.++++ ..++.. .++.|.+||..+++.+..+.      +...+.
T Consensus       228 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~d~~~~~~~~~~~------~~~~~~  295 (346)
T d1jmxb_         228 LLYGYLSVDLKTGKTH-----TQEFADLTELYFTGLRSPKDPNQIYG-VLNRLAKYDLKQRKLIKAAN------LDHTYY  295 (346)
T ss_dssp             EEEEEEEEETTTCCEE-----EEEEEECSSCEEEEEECSSCTTEEEE-EESEEEEEETTTTEEEEEEE------CSSCCC
T ss_pred             CCceEEEEECCCCceE-----EEEeecccceeEEEEEeCCCCEEEEe-cCCeEEEEECCCCcEEEEEc------CCCCEE
Confidence            344 777787765432     2344566778888888888 555554 45689999999999888874      234688


Q ss_pred             eeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784          443 CSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       443 ~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      +++|+|||++|++++  .++.|++||..+.+..
T Consensus       296 ~va~s~DG~~l~v~~--~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         296 CVAFDKKGDKLYLGG--TFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             EEEECSSSSCEEEES--BSSEEEEEETTTTEEE
T ss_pred             EEEEcCCCCEEEEEe--CCCcEEEEECccCCEE
Confidence            999999999999998  5599999999887653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=7.9e-20  Score=167.13  Aligned_cols=273  Identities=12%  Similarity=0.067  Sum_probs=193.5

Q ss_pred             EEEeecCCeeeEEEEecccccccceeccc--CCcceeEEEeeccCcCcccccCCCCcCcEE-EEeeCCCceEEec--CCc
Q 010784          123 IFSTQGSSIQNIKIDNFLSESYYRATLSD--HKARITCMRLFPLHETSLFRSEPQRTENVL-VTSSCDHSIRLWW--KGS  197 (501)
Q Consensus       123 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~--h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vwd--~~~  197 (501)
                      .|+++++.|+.|.|||++++ +.++.+..  +...+.+++|+|             ||+++ ++++.++.|.+||  +++
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~-~~~~~i~~~~~~~~~~~i~~sp-------------Dg~~l~v~~~~~~~v~v~D~~t~~   67 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAP-------------GGRIAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-EEEEEEECTTCTTCCCCEEECT-------------TSSEEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEEEcCCCEEEEEECCCC-eEEEEEECCCCCCCccEEEECC-------------CCCEEEEEECCCCeEEEEECCCCc
Confidence            58999999999999999985 77777754  345688999999             88876 5677899999999  777


Q ss_pred             eeeeccCCCC-----ceEEEEeeecCCCCCCEEEEeeC------------CCcEEEEeccCCCccccccceeeccCCCCc
Q 010784          198 CQRCFKGHNG-----PVSTLSDKLLGDGSGKILASGGE------------DATVRLWSLSSSGKRGQQALKATLYGHEKP  260 (501)
Q Consensus       198 ~~~~~~~h~~-----~v~~l~~s~~~~~~~~~l~sg~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  260 (501)
                      .+..+..+..     .+..++|+    +++++++++..            ++.+.+||..++.      ....+. +...
T Consensus        68 ~~~~~~~~~~~~~~~~~~~v~~s----~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~-~~~~  136 (337)
T d1pbyb_          68 TLGRIDLSTPEERVKSLFGAALS----PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS------RRKAFE-APRQ  136 (337)
T ss_dssp             EEEEEECCBTTEEEECTTCEEEC----TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE------EEEEEE-CCSS
T ss_pred             EEEEEecCCCcccccceeeEEEc----CCCcEEEEeecCCcceeeeccccccceeeccccCCe------EEEecc-ccCC
Confidence            7777665433     34578886    89999888763            5678889988875      244444 4456


Q ss_pred             eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-----ecCCCceeeecCCCe-E---EEEe--------
Q 010784          261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-----SVPGVPVDMKCHESM-L---YIAS--------  323 (501)
Q Consensus       261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~---~~~~--------  323 (501)
                      +..+++++ ++.++++++.+  +.+||..+++...........     ...+........... .   ....        
T Consensus       137 ~~~~~~s~-dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (337)
T d1pbyb_         137 ITMLAWAR-DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD  213 (337)
T ss_dssp             CCCEEECT-TSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTS
T ss_pred             ceEEEEcC-CCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceee
Confidence            78899997 77788887654  778999887654432211100     111111111111111 0   0111        


Q ss_pred             ----CCcEEEEEcCCCceEe-eeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784          324 ----GSSVVTIDLRTMQKVM-TPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQL  398 (501)
Q Consensus       324 ----~~~i~~~d~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  398 (501)
                          ...+.+||..++.... .+..+...+..+.++|++.+++++. +.|++||+.+++.+      ..+. +...+.++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~~~~~------~~~~-~~~~~~~~  285 (337)
T d1pbyb_         214 PTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-NVLESFDLEKNASI------KRVP-LPHSYYSV  285 (337)
T ss_dssp             GGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-SEEEEEETTTTEEE------EEEE-CSSCCCEE
T ss_pred             ecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc-ccEEEEECCCCcEE------EEEc-CCCCEEEE
Confidence                1158889998887654 3455677888999999999887663 34999999997654      4443 45678999


Q ss_pred             EecCC-eEEEEecCCCcEEEEeCCCccccccccc
Q 010784          399 HMDPY-KIVTGGRDDLRINIWETDTGMLANSLLC  431 (501)
Q Consensus       399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~  431 (501)
                      +|+|+ +.+++++.|+.|++||..+++.+.++..
T Consensus       286 ~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         286 NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            99999 7777778999999999999999988853

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=3.6e-20  Score=170.12  Aligned_cols=281  Identities=10%  Similarity=0.001  Sum_probs=193.8

Q ss_pred             EEeeCCcEEEeecCCeeeEEEEecccccccceecc-cCCcceeEEEeeccCcCcccccCCCCcCcEE-EEeeCCCceEEe
Q 010784          116 ILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLS-DHKARITCMRLFPLHETSLFRSEPQRTENVL-VTSSCDHSIRLW  193 (501)
Q Consensus       116 ~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vw  193 (501)
                      +++++++.|+++++.++.|.+||+.++ +++++++ .|...+.+++|+|             ||+++ ++++.++.|++|
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~-~~~~t~~~~~~~~p~~l~~sp-------------DG~~l~v~~~~~~~v~~~   67 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD-TVYKSCVMPDKFGPGTAMMAP-------------DNRTAYVLNNHYGDIYGI   67 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT-EEEEEEECSSCCSSCEEEECT-------------TSSEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC-CEEEEEEcCCCCCcceEEECC-------------CCCEEEEEECCCCcEEEE
Confidence            478999999999999999999999995 8888876 4566789999999             78876 666789999999


Q ss_pred             c--CCceeeeccCC------CCceEEEEeeecCCCCCCEEEEee------------CCCcEEEEeccCCCccccccceee
Q 010784          194 W--KGSCQRCFKGH------NGPVSTLSDKLLGDGSGKILASGG------------EDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       194 d--~~~~~~~~~~h------~~~v~~l~~s~~~~~~~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      |  +++.+..+...      ...+..++|+    ++|+++++++            .++.+.+|+..++..      ...
T Consensus        68 d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s----~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~  137 (346)
T d1jmxb_          68 DLDTCKNTFHANLSSVPGEVGRSMYSFAIS----PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE------AKP  137 (346)
T ss_dssp             ETTTTEEEEEEESCCSTTEEEECSSCEEEC----TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG------BCC
T ss_pred             eCccCeeeeeecccccccccCCceEEEEEe----cCCCEEEEEecCCcceeeeeccCcceEEEEeccccee------eeE
Confidence            9  66666555422      2235578886    8999888775            467788999887653      222


Q ss_pred             ccC--CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-----ecCCCceeeecC-CCeEE-----
Q 010784          254 LYG--HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-----SVPGVPVDMKCH-ESMLY-----  320 (501)
Q Consensus       254 ~~~--~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~-----  320 (501)
                      +..  ....+..+.+.+ ++.++++ +  +.+.+|++.+++...........     ...+........ .....     
T Consensus       138 ~~~~~~~~~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (346)
T d1jmxb_         138 VRTFPMPRQVYLMRAAD-DGSLYVA-G--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI  213 (346)
T ss_dssp             SEEEECCSSCCCEEECT-TSCEEEE-S--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             EEeeeccCceEEEEecC-CCEEEEe-C--CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeee
Confidence            221  223444455553 5554443 3  45899999887654432211100     111111101111 11110     


Q ss_pred             ---------EEe---CCcEEEEEcCCCceEe-eeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCccc
Q 010784          321 ---------IAS---GSSVVTIDLRTMQKVM-TPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAE  387 (501)
Q Consensus       321 ---------~~~---~~~i~~~d~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~  387 (501)
                               +..   ...+.+||+.++.... ....+...+..+.+++++.+++....+.|++||..+++..      ..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~------~~  287 (346)
T d1jmxb_         214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLI------KA  287 (346)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEE------EE
T ss_pred             eeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEE------EE
Confidence                     111   1258889998887654 4456788899999999988888888777999999987654      44


Q ss_pred             ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccccccccc
Q 010784          388 LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLC  431 (501)
Q Consensus       388 ~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~  431 (501)
                      +. +...+.+++|+|+ +.+++++.|+.|++||+.+++.+.++..
T Consensus       288 ~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         288 AN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             EE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             Ec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            43 3457999999999 7777777999999999999999988853

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=4.8e-20  Score=168.57  Aligned_cols=263  Identities=11%  Similarity=0.027  Sum_probs=183.8

Q ss_pred             cEEEEeeCCCceEEec--CCceeeeccC--CCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceee
Q 010784          179 NVLVTSSCDHSIRLWW--KGSCQRCFKG--HNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKAT  253 (501)
Q Consensus       179 ~~l~s~~~dg~i~vwd--~~~~~~~~~~--h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~  253 (501)
                      +++++++.|++|+|||  +++.+..+..  +...+.+++|+    |+|+++ ++++.++.|.+||+.+++.      +..
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~s----pDg~~l~v~~~~~~~v~v~D~~t~~~------~~~   71 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA----PGGRIAYATVNKSESLVKIDLVTGET------LGR   71 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC----TTSSEEEEEETTTTEEEEEETTTCCE------EEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEEC----CCCCEEEEEECCCCeEEEEECCCCcE------EEE
Confidence            5899999999999999  7777777754  44567899997    899887 5667899999999999763      444


Q ss_pred             ccCCC-----CceeEEEEeecCCeEEEEEe------------CCCeEEEEECCCCccccceecccceecCCCceeeecCC
Q 010784          254 LYGHE-----KPIKLMSVAGHKSFLLVTIS------------KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE  316 (501)
Q Consensus       254 ~~~~~-----~~v~~l~~~~~~~~~l~s~s------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (501)
                      +..+.     ..+..++++| +++.++++.            .+..+.+||..+++....      ......+..+.+++
T Consensus        72 ~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~~~~~s~  144 (337)
T d1pbyb_          72 IDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA------FEAPRQITMLAWAR  144 (337)
T ss_dssp             EECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE------EECCSSCCCEEECT
T ss_pred             EecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEe------ccccCCceEEEEcC
Confidence            44332     3345788998 666666664            457788999988754332      23334455555555


Q ss_pred             CeEEE-EeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC------------------------CcEEEEEcCCc-EEE
Q 010784          317 SMLYI-ASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS------------------------KSLICTGGIGK-AMT  370 (501)
Q Consensus       317 ~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~------------------------~~~l~~~~~d~-i~i  370 (501)
                      ++.++ +.++.+.+||..+++....+..+... ....+.++                        ......+..+. +.+
T Consensus       145 dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (337)
T d1pbyb_         145 DGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT  223 (337)
T ss_dssp             TSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred             CCCEEEEEcCCcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEE
Confidence            54333 34567889999998887766543211 01111111                        11111223344 888


Q ss_pred             EecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecc
Q 010784          371 WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS  449 (501)
Q Consensus       371 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  449 (501)
                      ||..++...     ...+..+...+..+.++|+ .+++++  ++.|++||+.+++.+..+.      +...+.+++|+||
T Consensus       224 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~s~d  290 (337)
T d1pbyb_         224 MDLETGEMA-----MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP------LPHSYYSVNVSTD  290 (337)
T ss_dssp             EETTTCCEE-----EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE------CSSCCCEEEECTT
T ss_pred             EEcCCCcEE-----EEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc------CCCCEEEEEECCC
Confidence            888876532     2344556777888899999 666654  6899999999999998884      2456889999999


Q ss_pred             ccEEEEeecCCCceEEEeeccCCcc
Q 010784          450 GCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       450 g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      |++|++++  .++.|++||..+.+.
T Consensus       291 G~~l~v~~--~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         291 GSTVWLGG--ALGDLAAYDAETLEK  313 (337)
T ss_dssp             SCEEEEES--BSSEEEEEETTTCCE
T ss_pred             CCEEEEEe--CCCcEEEEECCCCcE
Confidence            99999998  569999999988765

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.83  E-value=5.7e-18  Score=152.00  Aligned_cols=245  Identities=13%  Similarity=0.088  Sum_probs=177.6

Q ss_pred             ecCCCCceEEeeCCcEEE-eecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEee
Q 010784          108 SVAKPHDHILLDNNDIFS-TQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTSS  185 (501)
Q Consensus       108 ~~~~~i~~~~~~~~~~~~-~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~  185 (501)
                      .....+..++++|+|+++ ++++.++.|.+||+.++ +.+..+..|.. +..++|++             ++. .++++.
T Consensus        29 ~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~-~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~   93 (301)
T d1l0qa2          29 PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN-NVIATVPAGSS-PQGVAVSP-------------DGKQVYVTNM   93 (301)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-EEEEEEECSSS-EEEEEECT-------------TSSEEEEEET
T ss_pred             ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-ceeeeeecccc-cccccccc-------------cccccccccc
Confidence            334557889999999877 57778999999999985 77788877765 68899998             565 555666


Q ss_pred             CCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEE-EeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784          186 CDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILA-SGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK  262 (501)
Q Consensus       186 ~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  262 (501)
                      .++.+.+|+  .++....+.. .....++.|+    +++..++ ++..++.+.+|+..+...      ...+.. ...+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~dg~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~  161 (301)
T d1l0qa2          94 ASSTLSVIDTTSNTVAGTVKT-GKSPLGLALS----PDGKKLYVTNNGDKTVSVINTVTKAV------INTVSV-GRSPK  161 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEEC-SSSEEEEEEC----TTSSEEEEEETTTTEEEEEETTTTEE------EEEEEC-CSSEE
T ss_pred             ccceeeecccccceeeeeccc-cccceEEEee----cCCCeeeeeeccccceeeeeccccce------eeeccc-CCCce
Confidence            778899998  5566666654 4566788886    7777664 556688899999988763      444443 44577


Q ss_pred             EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784          263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA  342 (501)
Q Consensus       263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  342 (501)
                      .+.++++...++++...++.+.+|+....+..                                            ....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~  197 (301)
T d1l0qa2         162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVI--------------------------------------------DTVK  197 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEE--------------------------------------------EEEE
T ss_pred             EEEeeccccceeeecccccccccccccceeee--------------------------------------------eccc
Confidence            88999844444444445567777776655321                                            1111


Q ss_pred             cCCCcEEEEEEcCCCcEEEEEc---CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecCCCcEE
Q 010784          343 ICKPILHSFSIMPSKSLICTGG---IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRDDLRIN  416 (501)
Q Consensus       343 ~~~~~v~~v~~~~~~~~l~~~~---~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~dg~i~  416 (501)
                       ....+..+++++++..++.+.   .++ |++||+.+++..      ..+.. ...+.+++|+|+ + ++++++.|+.|+
T Consensus       198 -~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~------~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~  269 (301)
T d1l0qa2         198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT------ARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVS  269 (301)
T ss_dssp             -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE------EEEEC-CSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             -ccCCcceeeccccccccccccccceeeeeeeeecCCCeEE------EEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEE
Confidence             245567889999988776554   334 999999987654      55543 456899999999 4 567888899999


Q ss_pred             EEeCCCccccccccc
Q 010784          417 IWETDTGMLANSLLC  431 (501)
Q Consensus       417 iwd~~~~~~~~~~~~  431 (501)
                      +||+.+++++.++..
T Consensus       270 v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         270 VIDTATNTITATMAV  284 (301)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEECCCCeEEEEEeC
Confidence            999999999988853

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=8.5e-18  Score=153.25  Aligned_cols=285  Identities=10%  Similarity=0.101  Sum_probs=185.9

Q ss_pred             EEEeecCCeeeEEEEecccccc-cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE-eeCCCceEEec--CCce
Q 010784          123 IFSTQGSSIQNIKIDNFLSESY-YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT-SSCDHSIRLWW--KGSC  198 (501)
Q Consensus       123 ~~~~~g~~d~~i~vw~~~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~dg~i~vwd--~~~~  198 (501)
                      ..+++++.++.|++|++.+... .+.....|.+.|..|+|+|             ||++|++ +..|+.|++|+  ....
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-------------DG~~L~v~~~~d~~i~~~~i~~~~~   71 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-------------DKRYLYVGVRPEFRVLAYRIAPDDG   71 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-------------TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-------------CCCEEEEEECCCCeEEEEEEeCCCC
Confidence            4567888999999999875322 1222236889999999999             8888854 45589999997  2222


Q ss_pred             eeec---cCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEE
Q 010784          199 QRCF---KGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLL  274 (501)
Q Consensus       199 ~~~~---~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  274 (501)
                      ...+   ..+...+..++|+    ++|++|++++. ++.|.+|+......    ........+...+.++.++| +++.+
T Consensus        72 ~~~~~~~~~~~~~p~~l~~s----pDg~~l~v~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~v~~s~-d~~~~  142 (333)
T d1ri6a_          72 ALTFAAESALPGSLTHISTD----HQGQFVFVGSYNAGNVSVTRLEDGLP----VGVVDVVEGLDGCHSANISP-DNRTL  142 (333)
T ss_dssp             CEEEEEEEECSSCCSEEEEC----TTSSEEEEEETTTTEEEEEEEETTEE----EEEEEEECCCTTBCCCEECT-TSSEE
T ss_pred             cEEEeeecccCCCceEEEEc----CCCCEEeecccCCCceeeeccccccc----eecccccCCCccceEEEeee-cceee
Confidence            2221   2344567789997    89999998875 67899998876542    12233345667788889998 55555


Q ss_pred             EEEe-CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEE
Q 010784          275 VTIS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSI  353 (501)
Q Consensus       275 ~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~  353 (501)
                      ++++ .+..|.+|+...........                                      ..............++|
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~p~~i~~  184 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQD--------------------------------------PAEVTTVEGAGPRHMVF  184 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEE--------------------------------------EEEEECSTTCCEEEEEE
T ss_pred             eccccccceeeEEEeccCCcceeee--------------------------------------ceeeeeecCCCccEEEE
Confidence            5554 56679999987653211100                                      00011123455678999


Q ss_pred             cCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccc------cCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc
Q 010784          354 MPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAEL------DGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       354 ~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~------~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~  423 (501)
                      ++++.+++... ... ..+++.......  .......      .........++++++  .+++++..++.+.+|++...
T Consensus       185 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~  262 (333)
T d1ri6a_         185 HPNEQYAYCVNELNSSVDVWELKDPHGN--IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED  262 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEESSCTTSC--CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             eccceeEEeeccccCceEEEeecccccc--eeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCC
Confidence            99988877665 344 888887654322  1111111      122345677888988  66777778899999998765


Q ss_pred             ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784          424 MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA  472 (501)
Q Consensus       424 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~  472 (501)
                      .....+....  .....+..++|+|||++|++++. .++.|.+|++...
T Consensus       263 ~~~~~~~~~~--~~~~~p~~~a~spDGk~l~va~~-~~~~v~v~~id~~  308 (333)
T d1ri6a_         263 GSVLSKEGFQ--PTETQPRGFNVDHSGKYLIAAGQ-KSHHISVYEIVGE  308 (333)
T ss_dssp             SCCEEEEEEE--ECSSSCCCEEECTTSSEEEEECT-TTCEEEEEEEETT
T ss_pred             CCEEEEEEEe--CCCCCeeEEEEeCCCCEEEEEEC-CCCeEEEEEEECC
Confidence            5444442211  12345678999999999888764 5689999977653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.80  E-value=4e-17  Score=151.41  Aligned_cols=299  Identities=8%  Similarity=-0.055  Sum_probs=195.1

Q ss_pred             cCCCCceEEeeCCcEEEeec-----CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784          109 VAKPHDHILLDNNDIFSTQG-----SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT  183 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g-----~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s  183 (501)
                      ...++..++++|+|+.++..     +..+.+.+||..++ +.+.++..+...  .++|+|             ||++|++
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg-~~~~~~~~~~~~--~~a~Sp-------------DG~~l~v   82 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG-SILGHVNGGFLP--NPVAAH-------------SGSEFAL   82 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC-CEEEEEeCCCCc--cEEEcC-------------CCCEEEE
Confidence            55678999999999988654     23467999999986 777778776554  789999             8888888


Q ss_pred             ee----------CCCceEEec--CCceeeeccCCCCceE-------EEEeeecCCCCCCEEEEe--eCCCcEEEEeccCC
Q 010784          184 SS----------CDHSIRLWW--KGSCQRCFKGHNGPVS-------TLSDKLLGDGSGKILASG--GEDATVRLWSLSSS  242 (501)
Q Consensus       184 ~~----------~dg~i~vwd--~~~~~~~~~~h~~~v~-------~l~~s~~~~~~~~~l~sg--~~dg~i~iwd~~~~  242 (501)
                      ++          .++.|.+||  +++.+..+..+.....       .+.|+    ++++.++..  ..++.+.+|+....
T Consensus        83 a~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s----~dg~~~~v~~~~~~~~~~~~~~~~~  158 (373)
T d2madh_          83 ASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT----PNNADLLFFQFAAGPAVGLVVQGGS  158 (373)
T ss_pred             EeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEE----eCCCcEEEEEEcCCCceEEeeccCC
Confidence            65          467899999  7777777666555443       34555    566655444  34567778887764


Q ss_pred             CccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-ecCCCceeeecCCCeEEE
Q 010784          243 GKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGVPVDMKCHESMLYI  321 (501)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  321 (501)
                      ..      .    .+.....++.+++.+...+++.+.|+.+.+|+...++........... ............++..++
T Consensus       159 ~~------~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (373)
T d2madh_         159 SD------D----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV  228 (373)
T ss_pred             eE------E----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE
Confidence            31      2    223345678888866677889999999999999887654332211110 111112223334444333


Q ss_pred             E--eCCcEEEEEcCCCceEe--eeccC----------CCcEEEEEEcCCCcEEE----------EEcCCc-EEEEecCCC
Q 010784          322 A--SGSSVVTIDLRTMQKVM--TPAIC----------KPILHSFSIMPSKSLIC----------TGGIGK-AMTWDIRRS  376 (501)
Q Consensus       322 ~--~~~~i~~~d~~~~~~~~--~~~~~----------~~~v~~v~~~~~~~~l~----------~~~~d~-i~iwd~~~~  376 (501)
                      .  .++.+.+|+..+.....  ....+          ......+++++++..++          ....++ +.+||..++
T Consensus       229 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~  308 (373)
T d2madh_         229 WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG  308 (373)
T ss_pred             EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC
Confidence            3  34577788777654321  11111          12233455566555443          344455 899999987


Q ss_pred             CCCCCCCCcccccCcccCeEEEEecCC-e--EEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecc
Q 010784          377 QDAVKPQPMAELDGHVGSVTQLHMDPY-K--IVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS  449 (501)
Q Consensus       377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~-~--~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  449 (501)
                      +..      ..+. +...+..++|+|+ +  ++++++.|+.|++||+.+++.+.++     ..+......+++..+
T Consensus       309 ~~~------~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~-----~~~g~~P~~l~~~~~  372 (373)
T d2madh_         309 QTS------SQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST-----VELGSGPQVLSVMNE  372 (373)
T ss_pred             cEE------EEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE-----CCCCCCCcEEEEecC
Confidence            654      4443 5677899999998 4  5678889999999999999999999     344455666666543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.72  E-value=6.1e-15  Score=136.42  Aligned_cols=281  Identities=11%  Similarity=-0.037  Sum_probs=179.5

Q ss_pred             ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe-----eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCC
Q 010784          150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS-----SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSG  222 (501)
Q Consensus       150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~-----~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~  222 (501)
                      ..+.+++..++++|             +|+.++..     +.++.|.+||  +++.+.++..+..+  .++|+    |+|
T Consensus        17 ~~~~~p~~~~a~sp-------------dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~S----pDG   77 (373)
T d2madh_          17 GAADGPTNDEAPGA-------------DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAA----HSG   77 (373)
T ss_pred             ccCCCCccccccCC-------------CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEc----CCC
Confidence            46778888899988             78887654     2346788898  88888888766544  68897    899


Q ss_pred             CEEEEee----------CCCcEEEEeccCCCccccccceeeccCCCCce-------eEEEEeecCCeEEEEE--eCCCeE
Q 010784          223 KILASGG----------EDATVRLWSLSSSGKRGQQALKATLYGHEKPI-------KLMSVAGHKSFLLVTI--SKDSKV  283 (501)
Q Consensus       223 ~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-------~~l~~~~~~~~~l~s~--s~dg~v  283 (501)
                      ++|++++          .++.|.+||..+++.      ...+..+....       ..+.|++ +++.++..  ..++.+
T Consensus        78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~------~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~  150 (373)
T d2madh_          78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLP------IADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAV  150 (373)
T ss_pred             CEEEEEeecCCcccccccceEEEEEECCCCcE------EEEEecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCce
Confidence            9998875          457899999998863      55554444332       3467776 44443333  345678


Q ss_pred             EEEECCCCccccceecccceecCCCceeeecCCCeEEEEe--CCcEEEEEcCCCceEeeeccC------CCcEEEEEEcC
Q 010784          284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS--GSSVVTIDLRTMQKVMTPAIC------KPILHSFSIMP  355 (501)
Q Consensus       284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~------~~~v~~v~~~~  355 (501)
                      .+|+....+......       ......+...+...+++.  ++.+.+|+...++.......+      ......+.+++
T Consensus       151 ~~~~~~~~~~~~~~~-------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (373)
T d2madh_         151 GLVVQGGSSDDQLLS-------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEeeccCCeEEEEec-------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC
Confidence            888887765432211       111222333444444443  358999999888776554432      22234556666


Q ss_pred             CCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCc----------ccCeEEEEecCC-----------eEEEEecCCCc
Q 010784          356 SKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH----------VGSVTQLHMDPY-----------KIVTGGRDDLR  414 (501)
Q Consensus       356 ~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h----------~~~v~~l~~~~~-----------~~l~~gs~dg~  414 (501)
                      ++.+++.+.++.+.+|+.......    .+.....+          ......++++++           ..++....++.
T Consensus       224 ~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  299 (373)
T d2madh_         224 SGRIVWPVYSGKILQADISAAGAT----NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE  299 (373)
T ss_pred             CceEEEecCCceEEEEEcCCCeEE----EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe
Confidence            676665554444999988775421    01111111          111223334333           23344457788


Q ss_pred             EEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE--EEeecCCCceEEEeeccCCccc
Q 010784          415 INIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI--VTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       415 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l--~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      +.+||..+++.+..+.      +...+..++|+|||+.+  ++++  .++.|++||..+++..
T Consensus       300 v~~~d~~t~~~~~~~~------~~~~~~~~a~spDG~~~l~vt~~--~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         300 VTSVTGLVGQTSSQIS------LGHDVDAISVAQDGGPDLYALSA--GTEVLHIYDAGAGDQD  354 (373)
T ss_pred             EEEEECCCCcEEEEec------CCCCeeEEEECCCCCEEEEEEeC--CCCeEEEEECCCCCEE
Confidence            9999999999988873      34568899999999853  4555  6799999999988753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.5e-16  Score=146.23  Aligned_cols=283  Identities=7%  Similarity=-0.083  Sum_probs=177.2

Q ss_pred             CCceEEeeCCcEEEeec-----CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe--
Q 010784          112 PHDHILLDNNDIFSTQG-----SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS--  184 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g-----~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~--  184 (501)
                      |+.-.+.+||++.++..     .....+.+||..++ +.+.++..+...  .++|+|             ||++|++.  
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg-~~~~~~~~g~~~--~~a~Sp-------------Dg~~l~v~~~   66 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG-RVIGMIDGGFLP--NPVVAD-------------DGSFIAHAST   66 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT-EEEEEEEECSSC--EEEECT-------------TSSCEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCC-cEEEEEECCCCC--ceEEcC-------------CCCEEEEEeC
Confidence            34445668888877543     45678999999986 777777665444  789999             78877754  


Q ss_pred             --------eCCCceEEec--CCceeeeccCCC-------CceEEEEeeecCCCCCCEEEEee--CCCcEEEEeccCCCcc
Q 010784          185 --------SCDHSIRLWW--KGSCQRCFKGHN-------GPVSTLSDKLLGDGSGKILASGG--EDATVRLWSLSSSGKR  245 (501)
Q Consensus       185 --------~~dg~i~vwd--~~~~~~~~~~h~-------~~v~~l~~s~~~~~~~~~l~sg~--~dg~i~iwd~~~~~~~  245 (501)
                              +.|+.|++||  +++.+..+..+.       .....++|+    +++++++.+.  .+..+.+|+..+++. 
T Consensus        67 ~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s----~dg~~~~v~~~~~~~~~~~~~~~~~~~-  141 (355)
T d2bbkh_          67 VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT----PDGKTLLFYQFSPAPAVGVVDLEGKAF-  141 (355)
T ss_dssp             EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC----TTSSEEEEEECSSSCEEEEEETTTTEE-
T ss_pred             CCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEe----cCCCeeEEecCCCCceeeeeecCCCcE-
Confidence                    4578999999  666665543222       223457786    7888877664  567899999988763 


Q ss_pred             ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC
Q 010784          246 GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS  325 (501)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (501)
                           ...+..+....   .+ +......++.+.|+...++........                               
T Consensus       142 -----~~~~~~~~~~~---~~-~~~~~~~~~~~~dg~~~~v~~~~~~~~-------------------------------  181 (355)
T d2bbkh_         142 -----KRMLDVPDCYH---IF-PTAPDTFFMHCRDGSLAKVAFGTEGTP-------------------------------  181 (355)
T ss_dssp             -----EEEEECCSEEE---EE-EEETTEEEEEETTSCEEEEECCSSSCC-------------------------------
T ss_pred             -----eeEEecCCcce---Ee-ecCCcceEEEcCCCCEEEEEecCCCeE-------------------------------
Confidence                 44444333221   11 113334555566666666655443211                               


Q ss_pred             cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc----------ccC
Q 010784          326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH----------VGS  394 (501)
Q Consensus       326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h----------~~~  394 (501)
                        .+++.....     ..+...+....+.+++..++.++.++ +++|++..++..    .+.....+          ...
T Consensus       182 --~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~  250 (355)
T d2bbkh_         182 --EITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK----FLPAVEALTEAERADGWRPGG  250 (355)
T ss_dssp             --EEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE----ECCCEESSCHHHHHTTEEECS
T ss_pred             --EEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE----EEeccCCcccceEeeeeeccc
Confidence              111111110     11223344456677777888888777 999999886532    11111111          123


Q ss_pred             eEEEEecCC--eEEEEecC---------CCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE--EEEeecCCC
Q 010784          395 VTQLHMDPY--KIVTGGRD---------DLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR--IVTASYGEP  461 (501)
Q Consensus       395 v~~l~~~~~--~~l~~gs~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~s~~~d~~  461 (501)
                      ...++++++  .++++...         ...|.+||..+++.+.++..      ...+.+++|+|||+.  +++++  .+
T Consensus       251 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~------~~~~~~~a~spDG~~~l~v~~~--~d  322 (355)
T d2bbkh_         251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM------GHEIDSINVSQDEKPLLYALST--GD  322 (355)
T ss_dssp             SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECCSSSCEEEEEET--TT
T ss_pred             eEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC------CCCEEEEEEcCCCCeEEEEEEC--CC
Confidence            345778887  33333221         24699999999999888842      345789999999983  34444  67


Q ss_pred             ceEEEeeccCCcc
Q 010784          462 GLLQFRDFSNATC  474 (501)
Q Consensus       462 g~i~~w~~~~~~~  474 (501)
                      +.|++||..+++.
T Consensus       323 ~~i~v~D~~tg~~  335 (355)
T d2bbkh_         323 KTLYIHDAESGEE  335 (355)
T ss_dssp             TEEEEEETTTCCE
T ss_pred             CEEEEEECCCCCE
Confidence            9999999998875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.3e-14  Score=131.77  Aligned_cols=267  Identities=9%  Similarity=0.056  Sum_probs=167.9

Q ss_pred             EEEecCCCCceEEeeCCcEEE-eecCCeeeEEEEeccccccccee--cccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784          105 CFYSVAKPHDHILLDNNDIFS-TQGSSIQNIKIDNFLSESYYRAT--LSDHKARITCMRLFPLHETSLFRSEPQRTENVL  181 (501)
Q Consensus       105 ~~~~~~~~i~~~~~~~~~~~~-~~g~~d~~i~vw~~~~~~~~~~~--~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l  181 (501)
                      ....++..+..|+|+|||++| +++..++.|++|++.........  ...+...+..++|+|             ||++|
T Consensus        31 ~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-------------Dg~~l   97 (333)
T d1ri6a_          31 QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-------------QGQFV   97 (333)
T ss_dssp             EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-------------TSSEE
T ss_pred             EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC-------------CCCEE
Confidence            345677889999999999988 56667999999998764222211  123445678899999             88988


Q ss_pred             EEeeC-CCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeecc
Q 010784          182 VTSSC-DHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLY  255 (501)
Q Consensus       182 ~s~~~-dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~  255 (501)
                      ++++. ++.|.+|+  ...  .......+...+.++.++    ++++++++++. +..|.+|+.................
T Consensus        98 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s----~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (333)
T d1ri6a_          98 FVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS----PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT  173 (333)
T ss_dssp             EEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC----TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC
T ss_pred             eecccCCCceeeeccccccceecccccCCCccceEEEee----ecceeeeccccccceeeEEEeccCCcceeeeceeeee
Confidence            88875 67888887  222  223334567778888986    88888887764 4568999987754311111111222


Q ss_pred             CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784          256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM  335 (501)
Q Consensus       256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  335 (501)
                      ........++|++.....+.+....+...+|+...........  ...                          ...   
T Consensus       174 ~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~--------------------------~~~---  222 (333)
T d1ri6a_         174 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV--QTL--------------------------DMM---  222 (333)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE--EEE--------------------------ECS---
T ss_pred             ecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee--eee--------------------------eee---
Confidence            3445567899997555555555667788888875442211000  000                          000   


Q ss_pred             ceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecC
Q 010784          336 QKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRD  411 (501)
Q Consensus       336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~  411 (501)
                         ............+++++++++++... .++ +.+|++......   ..+.........+..++|+|+ + ++++++.
T Consensus       223 ---~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         223 ---PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV---LSKEGFQPTETQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             ---CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC---EEEEEEEECSSSCCCEEECTTSSEEEEECTT
T ss_pred             ---ecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCE---EEEEEEeCCCCCeeEEEEeCCCCEEEEEECC
Confidence               00011234567788999998776665 444 999998765433   111112223456788999999 5 5666667


Q ss_pred             CCcEEEEe--CCCccc
Q 010784          412 DLRINIWE--TDTGML  425 (501)
Q Consensus       412 dg~i~iwd--~~~~~~  425 (501)
                      ++.|++|+  .++|++
T Consensus       297 ~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         297 SHHISVYEIVGEQGLL  312 (333)
T ss_dssp             TCEEEEEEEETTTTEE
T ss_pred             CCeEEEEEEECCCCcE
Confidence            89999995  456644

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=6.1e-15  Score=135.34  Aligned_cols=256  Identities=10%  Similarity=0.006  Sum_probs=154.3

Q ss_pred             CCceEEeeCCcEEEeec----------CCeeeEEEEecccccccceecccCCc-------ceeEEEeeccCcCcccccCC
Q 010784          112 PHDHILLDNNDIFSTQG----------SSIQNIKIDNFLSESYYRATLSDHKA-------RITCMRLFPLHETSLFRSEP  174 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g----------~~d~~i~vw~~~~~~~~~~~~~~h~~-------~V~~~~~~~~~~~~~~~~~~  174 (501)
                      ....++|+|||+++++.          ..++.|.+||..++ +....+..+..       ....++|++           
T Consensus        48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~s~-----------  115 (355)
T d2bbkh_          48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL-LPTADIELPDAPRFLVGTYPWMTSLTP-----------  115 (355)
T ss_dssp             SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCCCCBSCCGGGEEECT-----------
T ss_pred             CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC-CEEEEEecCCcceeecCCCCceEEEec-----------
Confidence            45689999999988754          44789999999985 66555543332       234567887           


Q ss_pred             CCcCcEEEEee--CCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccc
Q 010784          175 QRTENVLVTSS--CDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQAL  250 (501)
Q Consensus       175 ~~~~~~l~s~~--~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  250 (501)
                        ++++++.++  .+..+.+|+  .++.+..+..+..... ..      ......++.+.||...++.............
T Consensus       116 --dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~  186 (355)
T d2bbkh_         116 --DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI-FP------TAPDTFFMHCRDGSLAKVAFGTEGTPEITHT  186 (355)
T ss_dssp             --TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE-EE------EETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred             --CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE-ee------cCCcceEEEcCCCCEEEEEecCCCeEEEEec
Confidence              788777654  467788998  6666666654332211 11      1122333344455554444433321000000


Q ss_pred             eeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEE
Q 010784          251 KATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI  330 (501)
Q Consensus       251 ~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  330 (501)
                      ......+...+....+.+ ++..++.++.++.+++|++..++....                                  
T Consensus       187 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------------------  231 (355)
T d2bbkh_         187 EVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFL----------------------------------  231 (355)
T ss_dssp             CCCSCTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEEC----------------------------------
T ss_pred             ccccceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEE----------------------------------
Confidence            001112333445556665 566788889999999999987743110                                  


Q ss_pred             EcCCCceEeee--ccCCCcEEEEEEcCCCcEEEEEcC----------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEE
Q 010784          331 DLRTMQKVMTP--AICKPILHSFSIMPSKSLICTGGI----------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQ  397 (501)
Q Consensus       331 d~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~----------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  397 (501)
                      +..+.......  .........+++++++..++....          .. |.+||..+++.+      ..+. +...+.+
T Consensus       232 ~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~------~~~~-~~~~~~~  304 (355)
T d2bbkh_         232 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL------AKFE-MGHEIDS  304 (355)
T ss_dssp             CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE------EEEE-EEEEECE
T ss_pred             eccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE------EEec-CCCCEEE
Confidence            00000000000  000112234678888887766531          24 999999987654      5554 3456889


Q ss_pred             EEecCC-e--EEEEecCCCcEEEEeCCCcccccccc
Q 010784          398 LHMDPY-K--IVTGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       398 l~~~~~-~--~l~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                      ++|+|+ +  ++++++.|+.|++||+++++.++++.
T Consensus       305 ~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         305 INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            999998 4  67778889999999999999999984

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.57  E-value=6.9e-13  Score=126.50  Aligned_cols=147  Identities=8%  Similarity=-0.054  Sum_probs=106.6

Q ss_pred             ceEEeeCCcEEEeecCCeeeEEEEecccccccc----eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC---
Q 010784          114 DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYR----ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC---  186 (501)
Q Consensus       114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~----~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---  186 (501)
                      ..+.|.+++.++...  ++.+.+||+.++....    ..+..|...|.++.|||             ||++|+.++.   
T Consensus        20 ~~~~W~~d~~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-------------Dg~~i~~~~~~~~   84 (470)
T d2bgra1          20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-------------DGQFILLEYNYVK   84 (470)
T ss_dssp             CCCEECSSSEEEEES--SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-------------TSSEEEEEEEEEE
T ss_pred             cCCEeCCCCEEEEEc--CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-------------CCCEEEEEECCcc
Confidence            346778899888765  5779999999863321    24556678899999999             8999988753   


Q ss_pred             ------CCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC---
Q 010784          187 ------DHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG---  256 (501)
Q Consensus       187 ------dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~---  256 (501)
                            ++.+.+|| .+..+..+..|...+..+.||    |+|+.+|.. .++.+.+|+..++..      ......   
T Consensus        85 ~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~S----PDG~~ia~~-~~~~l~~~~~~~g~~------~~~t~~~~~  153 (470)
T d2bgra1          85 QWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWS----PVGHKLAYV-WNNDIYVKIEPNLPS------YRITWTGKE  153 (470)
T ss_dssp             CSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEEC----SSTTCEEEE-ETTEEEEESSTTSCC------EECCSCCBT
T ss_pred             eeeeccCceEEEEECCCCcccccccCCccccccccc----cCcceeeEe-ecccceEEECCCCce------eeeeeccCC
Confidence                  56788999 556677788899999999998    899999985 567899999988763      211111   


Q ss_pred             ---------------CCCceeEEEEeecCCeEEEEEeCCCe-EEEEE
Q 010784          257 ---------------HEKPIKLMSVAGHKSFLLVTISKDSK-VRVWD  287 (501)
Q Consensus       257 ---------------~~~~v~~l~~~~~~~~~l~s~s~dg~-v~vwd  287 (501)
                                     ..+....+.|+| +++.|+....|.. +..|.
T Consensus       154 ~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         154 DIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEE
T ss_pred             CcccccccceeeeeeecCCccccEECC-CCCccceeEecCCcCceEE
Confidence                           123345678998 7778888765433 44443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=1.8e-13  Score=126.13  Aligned_cols=281  Identities=6%  Similarity=-0.117  Sum_probs=177.1

Q ss_pred             ceEEeeCCcE--EEe-ecCCe--eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee---
Q 010784          114 DHILLDNNDI--FST-QGSSI--QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS---  185 (501)
Q Consensus       114 ~~~~~~~~~~--~~~-~g~~d--~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---  185 (501)
                      ..++..+++.  +++ ....+  ..+.++|..++ +.+.++.++...  .++|+|             ||+.|++.+   
T Consensus        23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~-~~~~~~~~~~~~--~~a~sp-------------Dg~~i~~~~~~~   86 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG-VTLGHSLGAFLS--LAVAGH-------------SGSDFALASTSF   86 (368)
T ss_dssp             BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTT-EEEEEEEECTTC--EEEECT-------------TSSCEEEEEEEE
T ss_pred             cccccCCCCcceeEEeeccCCCcceEEEEeCCCC-cEEEEEeCCCCC--cceECC-------------CCCEEEEEcccC
Confidence            3344455544  343 34444  45667788875 677777776654  588999             788777643   


Q ss_pred             -------CCCceEEec--CCceeeeccCCCC-------ceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCCccccc
Q 010784          186 -------CDHSIRLWW--KGSCQRCFKGHNG-------PVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       186 -------~dg~i~vwd--~~~~~~~~~~h~~-------~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~  248 (501)
                             .|++|.+||  +++.+..+..+..       ....++|+    ++|++|+++. .++.+.+||+.+++.    
T Consensus        87 ~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S----pDGk~l~va~~~~~~v~~~d~~~~~~----  158 (368)
T d1mdah_          87 ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC----ASSACLLFFLFGSSAAAGLSVPGASD----  158 (368)
T ss_dssp             TTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC----TTSSCEEEEECSSSCEEEEEETTTEE----
T ss_pred             ccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEEC----CCCCEEEEEeCCCCeEEEEECCCCcE----
Confidence                   578899999  6666665543322       23457887    8999988776 579999999998763    


Q ss_pred             cceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-ecCCCceeeecCCCeEEEE-eCCc
Q 010784          249 ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGVPVDMKCHESMLYIA-SGSS  326 (501)
Q Consensus       249 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~  326 (501)
                        ...+..+....    +.+.....++..+.||.+.++++............... .....+...........+. .++.
T Consensus       159 --~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  232 (368)
T d1mdah_         159 --DQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASS  232 (368)
T ss_dssp             --EEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSC
T ss_pred             --eEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCC
Confidence              45554443332    22234557778888999999988766432211111111 1122233334444444443 4457


Q ss_pred             EEEEEcCCCceEeee--ccC----------CCcEEEEEEcCCCcEEEEEc---------CCc-EEEEecCCCCCCCCCCC
Q 010784          327 VVTIDLRTMQKVMTP--AIC----------KPILHSFSIMPSKSLICTGG---------IGK-AMTWDIRRSQDAVKPQP  384 (501)
Q Consensus       327 i~~~d~~~~~~~~~~--~~~----------~~~v~~v~~~~~~~~l~~~~---------~d~-i~iwd~~~~~~~~~~~~  384 (501)
                      +.+++..........  ..+          ......+++++++..++...         ... |.+||..+++.+     
T Consensus       233 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~-----  307 (368)
T d1mdah_         233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS-----  307 (368)
T ss_dssp             CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE-----
T ss_pred             EEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe-----
Confidence            777777655443211  111          11223577888877766542         123 889999987654     


Q ss_pred             cccccCcccCeEEEEecCC-e--EEEEecCCCcEEEEeCCCccccccccc
Q 010784          385 MAELDGHVGSVTQLHMDPY-K--IVTGGRDDLRINIWETDTGMLANSLLC  431 (501)
Q Consensus       385 ~~~~~~h~~~v~~l~~~~~-~--~l~~gs~dg~i~iwd~~~~~~~~~~~~  431 (501)
                       ..+. +...+.+++|+|+ +  +++++..|+.|++||..+++.+.++..
T Consensus       308 -~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         308 -GPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             -ECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             -EEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence             4544 3567889999998 4  567778899999999999999999864

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.3e-15  Score=107.38  Aligned_cols=82  Identities=15%  Similarity=0.210  Sum_probs=65.7

Q ss_pred             CCCCCCcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCccc--------cCCCCCcchhH
Q 010784           12 SPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVL--------VSGSLPTVRVR   83 (501)
Q Consensus        12 ~~~~~~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~~--------~~~~~~~~~~~   83 (501)
                      +|....|.|..||.||+.+||+||+++||+++++|||+|+.++.++.+|+.+|++.+....        .........|+
T Consensus        11 ~p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK   90 (102)
T d2ovrb1          11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWK   90 (102)
T ss_dssp             CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHH
T ss_pred             CchhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHH
Confidence            4666789999999999999999999999999999999999999999999999988753110        01111244589


Q ss_pred             HHHHHHHHHh
Q 010784           84 EAYLARRIAL   93 (501)
Q Consensus        84 ~~~~~~~~~~   93 (501)
                      ..|++++...
T Consensus        91 ~~Y~~~~~l~  100 (102)
T d2ovrb1          91 SAYIRQHRID  100 (102)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998877644

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.6e-15  Score=87.09  Aligned_cols=40  Identities=20%  Similarity=0.401  Sum_probs=38.8

Q ss_pred             ccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhH
Q 010784           21 ADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVW   60 (501)
Q Consensus        21 ~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW   60 (501)
                      ..||.|++.+||+||+++||+++++|||+|+++++++.||
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            5799999999999999999999999999999999999998

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=5e-14  Score=128.98  Aligned_cols=301  Identities=9%  Similarity=-0.012  Sum_probs=177.7

Q ss_pred             EEeecCCeeeEEEEecccccccceeccc------------------------------CCcceeEEEeeccCcCcccccC
Q 010784          124 FSTQGSSIQNIKIDNFLSESYYRATLSD------------------------------HKARITCMRLFPLHETSLFRSE  173 (501)
Q Consensus       124 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~------------------------------h~~~V~~~~~~~~~~~~~~~~~  173 (501)
                      .+++|+.+|.+.||++.++ +.++++.-                              |.-......             
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~-r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~-------------   78 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSM-RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTD-------------   78 (441)
T ss_dssp             EEEECBTTCCEEEEEETTT-EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEET-------------
T ss_pred             EEEeCCCCCcEEEEeCCCC-cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceec-------------
Confidence            3678889999999999875 44444321                              111122222             


Q ss_pred             CCCcCcEEEEe-eCCCceEEec--CCceeeecc-CCCCceEEEEeeecCCCCCC--EEEEeeCCC---------------
Q 010784          174 PQRTENVLVTS-SCDHSIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDGSGK--ILASGGEDA---------------  232 (501)
Q Consensus       174 ~~~~~~~l~s~-~~dg~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~--~l~sg~~dg---------------  232 (501)
                      ++|||++|+.. ..++.|.++|  +.+....+. .+......++|+    ++++  +++..+.+.               
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~s----pdg~t~YV~~~~~~~v~~~~dg~~~~~~~~  154 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQ----KVPKTNYVFCNAEFVIPQPNDGTDFSLDNS  154 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEEC----CSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEe----ccCCEEEEEeccCCcccccCcccccccccc
Confidence            34589888555 5788999999  666665543 356788999997    6676  555444332               


Q ss_pred             --cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-CeEEEEECCCCccccceecccceecCCCc
Q 010784          233 --TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVP  309 (501)
Q Consensus       233 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~  309 (501)
                        .+..+|..+...      ...+.. .+....+.++| +++++++++.+ ..+..++..+.+.....      .....+
T Consensus       155 ~~~~~~iD~~t~~v------~~qI~v-~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i------~v~n~p  220 (441)
T d1qnia2         155 YTMFTAIDAETMDV------AWQVIV-DGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWV------VVFNVE  220 (441)
T ss_dssp             EEEEEEEETTTCSE------EEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEE------EEEEHH
T ss_pred             cceEEeecCcccee------eEEEec-CCCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEE------EeCCcc
Confidence              224466665542      223322 23456788998 56666666544 33333333333221111      000111


Q ss_pred             eeeecCCCeEEEEe--CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCC--CC
Q 010784          310 VDMKCHESMLYIAS--GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVK--PQ  383 (501)
Q Consensus       310 ~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~--~~  383 (501)
                      ......+++.+...  .+.+.+++....+.+..+..... ...+.++|||+++++++ .+. |.+||+.+.+....  ..
T Consensus       221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~  299 (441)
T d1qnia2         221 RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIE  299 (441)
T ss_dssp             HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSC
T ss_pred             ceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCC
Confidence            11112222222222  23455555566566666666444 57899999999876655 555 99999976432110  01


Q ss_pred             CcccccCcc---cCeEEEEecCC-eEEEEecCCCcEEEEeCCCc----------ccccccccCCCCCCCcceeeeEeecc
Q 010784          384 PMAELDGHV---GSVTQLHMDPY-KIVTGGRDDLRINIWETDTG----------MLANSLLCNYPEEADISTGCSAMAVS  449 (501)
Q Consensus       384 ~~~~~~~h~---~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~s~~  449 (501)
                      ....+.++.   -.....+|+++ ..+++...|..|..|++...          ..+..+..|...+|...+.+.+++||
T Consensus       300 ~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pd  379 (441)
T d1qnia2         300 LRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDAD  379 (441)
T ss_dssp             GGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred             cceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCC
Confidence            111111111   12345689999 88888899999999998521          23444555666788889999999999


Q ss_pred             ccEEEEee
Q 010784          450 GCRIVTAS  457 (501)
Q Consensus       450 g~~l~s~~  457 (501)
                      |++|++++
T Consensus       380 Gk~l~s~~  387 (441)
T d1qnia2         380 GKWLVVLS  387 (441)
T ss_dssp             CCEEEEEE
T ss_pred             CcEEEecC
Confidence            99999995

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=4.9e-12  Score=116.27  Aligned_cols=242  Identities=10%  Similarity=-0.053  Sum_probs=153.8

Q ss_pred             CceEEeeCCcEEEee----------cCCeeeEEEEecccccccceecccCCc-------ceeEEEeeccCcCcccccCCC
Q 010784          113 HDHILLDNNDIFSTQ----------GSSIQNIKIDNFLSESYYRATLSDHKA-------RITCMRLFPLHETSLFRSEPQ  175 (501)
Q Consensus       113 i~~~~~~~~~~~~~~----------g~~d~~i~vw~~~~~~~~~~~~~~h~~-------~V~~~~~~~~~~~~~~~~~~~  175 (501)
                      ...++++|||++++.          |+.++.|.+||..++ +....+..|..       ....++|+|            
T Consensus        67 ~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~-~~~~~i~~p~~~~~~~g~~p~~~a~Sp------------  133 (368)
T d1mdah_          67 LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF-LPIADIELPDAPRFSVGPRVHIIGNCA------------  133 (368)
T ss_dssp             TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC-CEEEEEEETTSCSCCBSCCTTSEEECT------------
T ss_pred             CCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCC-cEeeeecCCccceecccCCccceEECC------------
Confidence            457899999998876          456899999999985 66665544332       234678888            


Q ss_pred             CcCcEEEEee-CCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee
Q 010784          176 RTENVLVTSS-CDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA  252 (501)
Q Consensus       176 ~~~~~l~s~~-~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  252 (501)
                       ||++|+++. .++.+.+||  .++.+..+..+......-       .....++..+.||.+.++++.............
T Consensus       134 -DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~  205 (368)
T d1mdah_         134 -SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHP-------GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             -TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEE-------EETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             -CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEcc-------CCCceEEEEcCCCCEEEEEecCCceeeeeeecc
Confidence             888887775 579999999  666666665554432111       234577778889999999987765421111112


Q ss_pred             eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc---------ceecCCCceeeecCCCeEEEEe
Q 010784          253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG---------MTSVPGVPVDMKCHESMLYIAS  323 (501)
Q Consensus       253 ~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  323 (501)
                      ....+...+....+.+ ++..+.+  ..+.+.+++..............         ..........+......++++.
T Consensus       206 ~~~~~~~~~~~~~~~~-~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~  282 (368)
T d1mdah_         206 CTGAQNCSSQAAQANY-PGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             SCTTSCBCSCCEEETT-TTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             cccccccceeeccccc-CcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEe
Confidence            2333444445555554 4444433  34556666666554321111000         0011223455566666666653


Q ss_pred             C----------CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc--EEEEEcCCc-EEEEecCCCCCC
Q 010784          324 G----------SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS--LICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       324 ~----------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~--~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                      .          ..+.+||..+++.+..+.. ...+.+++|+|||+  +++++..++ |++||..+++.+
T Consensus       283 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         283 VEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             cCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            2          1588999999998877764 46788999999986  345666677 999999998754

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=1.9e-13  Score=98.49  Aligned_cols=51  Identities=20%  Similarity=0.268  Sum_probs=46.4

Q ss_pred             CcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHc-CCchhHHHHHhhh
Q 010784           17 TTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVA-YSDSVWQRLFREQ   67 (501)
Q Consensus        17 ~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~-~~~~lW~~~~~~~   67 (501)
                      .|.|..||.||+.+||+||+++||+++++|||+|+.++ .++.||++++.+.
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            47889999999999999999999999999999999987 5678999988765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.34  E-value=5.1e-10  Score=106.19  Aligned_cols=295  Identities=11%  Similarity=-0.015  Sum_probs=161.2

Q ss_pred             CCCCceEEeeCCcEEEeecC---------CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          110 AKPHDHILLDNNDIFSTQGS---------SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       110 ~~~i~~~~~~~~~~~~~~g~---------~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      ...|.++.|+|||++|+.++         .++.+.+||+.++ + ...+..|.+.+..+.|||             ||+.
T Consensus        61 ~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~-~-~~~l~~~~~~~~~~~~SP-------------DG~~  125 (470)
T d2bgra1          61 GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-Q-LITEERIPNNTQWVTWSP-------------VGHK  125 (470)
T ss_dssp             SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-E-ECCSSCCCTTEEEEEECS-------------STTC
T ss_pred             cCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC-c-ccccccCCcccccccccc-------------Ccce
Confidence            34589999999999999874         3678899999974 3 566889999999999999             8999


Q ss_pred             EEEeeCCCceEEec--CCceeeeccC------------------CCCceEEEEeeecCCCCCCEEEEeeCCCc-EEEEec
Q 010784          181 LVTSSCDHSIRLWW--KGSCQRCFKG------------------HNGPVSTLSDKLLGDGSGKILASGGEDAT-VRLWSL  239 (501)
Q Consensus       181 l~s~~~dg~i~vwd--~~~~~~~~~~------------------h~~~v~~l~~s~~~~~~~~~l~sg~~dg~-i~iwd~  239 (501)
                      +|... ++.+.+|+  .+...+....                  ..+....+.|+    |+|+.|+....|.+ +..|.+
T Consensus       126 ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS----PDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         126 LAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS----PNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             EEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC----TTSSEEEEEEEECTTCCEEEE
T ss_pred             eeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEEC----CCCCccceeEecCCcCceEEE
Confidence            99864 77899998  4443333221                  12334567787    89999998876543 444433


Q ss_pred             c-----------------------------------CCCccccccc-----eeeccCCCCceeEEEEeecCCeEEEEE-e
Q 010784          240 S-----------------------------------SSGKRGQQAL-----KATLYGHEKPIKLMSVAGHKSFLLVTI-S  278 (501)
Q Consensus       240 ~-----------------------------------~~~~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~~l~s~-s  278 (501)
                      .                                   .+........     ..........+..+.|.+ ++..++.. .
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~  279 (470)
T d2bgra1         201 SFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLR  279 (470)
T ss_dssp             EECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEE
T ss_pred             EeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcC-CCceeEEEee
Confidence            2                                   1110000000     000011122345566765 44433332 2


Q ss_pred             CCC---e--EEEEECCCCccccceecccce-e-------cCCCceeeecCCCeEE-EEeC--C--cEEEEEcCCCceEee
Q 010784          279 KDS---K--VRVWDTSTSSAVRSSCCVGMT-S-------VPGVPVDMKCHESMLY-IASG--S--SVVTIDLRTMQKVMT  340 (501)
Q Consensus       279 ~dg---~--v~vwd~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~-~~~~--~--~i~~~d~~~~~~~~~  340 (501)
                      ..+   .  +..+|..++............ .       ...........++..+ ..+.  +  .+.+++...+.... 
T Consensus       280 r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~-  358 (470)
T d2bgra1         280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-  358 (470)
T ss_dssp             SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEE-
T ss_pred             ccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceee-
Confidence            221   2  333444444322111000000 0       0111122233344433 2322  2  46666765555443 


Q ss_pred             eccCCCcEEEEEEcCCC-cEEEEEc-CC----cEEEEec--CCCCCCCCCCCc-ccccCcccCeEEEEecCC-eEEE-E-
Q 010784          341 PAICKPILHSFSIMPSK-SLICTGG-IG----KAMTWDI--RRSQDAVKPQPM-AELDGHVGSVTQLHMDPY-KIVT-G-  408 (501)
Q Consensus       341 ~~~~~~~v~~v~~~~~~-~~l~~~~-~d----~i~iwd~--~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~-~~l~-~-  408 (501)
                      +..+...|..+ +++++ .+++++. .+    .-.||.+  ..+...   +++ ..+.+|...+.+++|||+ ++++ + 
T Consensus       359 lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~---~~lt~~~~~~~~~~~s~~fSpdgky~~~~~  434 (470)
T d2bgra1         359 ITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKV---TCLSCELNPERCQYYSVSFSKEAKYYQLRC  434 (470)
T ss_dssp             SCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCE---EESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred             eccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCce---eEecccccCCCCCEEEEEECCCCCEEEEEe
Confidence            33345566666 33333 3334443 21    1245544  332221   111 345578889999999999 6555 3 


Q ss_pred             -ecCCCcEEEEeCCCcccccccc
Q 010784          409 -GRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       409 -gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                       |...-.+.+|+..+++.+..+.
T Consensus       435 s~~~~P~~~l~~~~~g~~v~~le  457 (470)
T d2bgra1         435 SGPGLPLYTLHSSVNDKGLRVLE  457 (470)
T ss_dssp             CSBSSCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCCeEEEEECCCCCEEEEEe
Confidence             3334458999999999988884

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.6e-13  Score=99.40  Aligned_cols=58  Identities=14%  Similarity=0.243  Sum_probs=51.9

Q ss_pred             CCCCCCCcccccccH----HHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhc
Q 010784           11 ASPSPSTTAIADLNE----DAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQW   68 (501)
Q Consensus        11 ~~~~~~~~~~~~Lp~----e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~   68 (501)
                      |++-...|.|..||.    ||+++||+|||++||+++++|||.|+.++.++.||++++.+.+
T Consensus         2 ~~~~l~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~   63 (118)
T d1p22a1           2 PAIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV   63 (118)
T ss_dssp             CCCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             hHHHHcccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhc
Confidence            345556789999995    9999999999999999999999999999999999999987763

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.20  E-value=2.8e-11  Score=110.62  Aligned_cols=260  Identities=8%  Similarity=-0.047  Sum_probs=160.4

Q ss_pred             EEEEeeCCCceEEec--CCceeeeccC------------------------------CCCceEEEEeeecCCCCCCEEEE
Q 010784          180 VLVTSSCDHSIRLWW--KGSCQRCFKG------------------------------HNGPVSTLSDKLLGDGSGKILAS  227 (501)
Q Consensus       180 ~l~s~~~dg~i~vwd--~~~~~~~~~~------------------------------h~~~v~~l~~s~~~~~~~~~l~s  227 (501)
                      .++||+.+|+|+||+  .++.++++..                              |........+.    +||++|++
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gt----pDGr~lfV   88 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGR----YDGKYLFI   88 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTE----EEEEEEEE
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceeccc----CCCCEEEE
Confidence            377888899999998  5555544321                              22233333333    68998866


Q ss_pred             ee-CCCcEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceec
Q 010784          228 GG-EDATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV  305 (501)
Q Consensus       228 g~-~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~  305 (501)
                      .. .++.|.++|+.+++.      ...+. .+...+..++|+|......+++..+..+.+  ...++...          
T Consensus        89 ~d~~~~rVavIDl~t~k~------~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~--~~dg~~~~----------  150 (441)
T d1qnia2          89 NDKANTRVARIRLDIMKT------DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ--PNDGTDFS----------  150 (441)
T ss_dssp             EETTTTEEEEEETTTTEE------EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES--SCSSSCCC----------
T ss_pred             EcCCCCEEEEEECCCCcE------eeEEecCCCCCccceEEeccCCEEEEEeccCCcccc--cCcccccc----------
Confidence            54 678999999999763      33332 356778899999843332333333333332  01111000          


Q ss_pred             CCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCC
Q 010784          306 PGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQ  383 (501)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~  383 (501)
                              ...  .    ...+..+|..+.+........ +....+.++|+|+++++++.+.  +..++..+.+..    
T Consensus       151 --------~~~--~----~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~----  211 (441)
T d1qnia2         151 --------LDN--S----YTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR----  211 (441)
T ss_dssp             --------GGG--E----EEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB----
T ss_pred             --------ccc--c----cceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceE----
Confidence                    000  0    013456777777777666543 4567899999999998887543  444555443322    


Q ss_pred             CcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc
Q 010784          384 PMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG  462 (501)
Q Consensus       384 ~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g  462 (501)
                        ..+.. ...-..+++.|+ +++..+ .++.+.+++....+.++.+..+      .....+.++|||+++++++. .++
T Consensus       212 --d~i~v-~n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvg------ksPhGv~vSPDGkyl~~~~~-~~~  280 (441)
T d1qnia2         212 --DWVVV-FNVERIAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVP------KNPHGLNTSPDGKYFIANGK-LSP  280 (441)
T ss_dssp             --CEEEE-EEHHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCB------SSCCCEEECTTSCEEEEECT-TSS
T ss_pred             --EEEEe-CCccceEEEecCCCEEEeC-CCCcEEEEcccCCceEEEEeCC------CCccCceECCCCCEEEEeCC-cCC
Confidence              11111 111223345677 666664 6788888888777777777432      23567999999999877665 689


Q ss_pred             eEEEeecc--------------------------------CCccceeecCCCCceeeeccc
Q 010784          463 LLQFRDFS--------------------------------NATCPVLKHEVQNDSKFWGPQ  491 (501)
Q Consensus       463 ~i~~w~~~--------------------------------~~~~~~~s~~~d~~~~~w~~~  491 (501)
                      +|.+||+.                                ..+..+.+...|..+..|++.
T Consensus       281 tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         281 TVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             BEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             cEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            99999953                                333445677788888889874

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.12  E-value=4.3e-08  Score=86.51  Aligned_cols=236  Identities=13%  Similarity=0.056  Sum_probs=150.5

Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcE
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATV  234 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i  234 (501)
                      .+..+++.|             ||+++++...+++|..|+.......+......+.+++|.    ++|+++++...++.+
T Consensus        29 ~~e~iAv~p-------------dG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~----~dG~l~v~~~~~~~~   91 (302)
T d2p4oa1          29 FLENLASAP-------------DGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFT----SNGDLVATGWNADSI   91 (302)
T ss_dssp             CEEEEEECT-------------TSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEEC----TTSCEEEEEECTTSC
T ss_pred             CcCCEEECC-------------CCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEc----CCCCeEEEecCCceE
Confidence            477889998             899999999999999999333344555567789999996    899999998888899


Q ss_pred             EEEeccCCCccccccceeec--cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceee
Q 010784          235 RLWSLSSSGKRGQQALKATL--YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM  312 (501)
Q Consensus       235 ~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  312 (501)
                      ..++......     ....+  .........+.+.+ +++++++.+.++.+..+|...+.....                
T Consensus        92 ~~~~~~~~~~-----~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~----------------  149 (302)
T d2p4oa1          92 PVVSLVKSDG-----TVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIW----------------  149 (302)
T ss_dssp             EEEEEECTTS-----CEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEE----------------
T ss_pred             EEEEeccccc-----ceeeccccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeE----------------
Confidence            8888766432     11221  22345678888886 788888888889998888876532110                


Q ss_pred             ecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc
Q 010784          313 KCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH  391 (501)
Q Consensus       313 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h  391 (501)
                                        -...................+.++. +.++++.+..+ |..++.......   .....+ ..
T Consensus       150 ------------------~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~---~~~~~~-~~  206 (302)
T d2p4oa1         150 ------------------LEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKP---GEPEIF-VE  206 (302)
T ss_dssp             ------------------EECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCB---CCCEEE-EE
T ss_pred             ------------------ecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccc---cccccc-cC
Confidence                              0000000000111123455666653 33444555555 888887764432   011111 12


Q ss_pred             ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc-cccccccCCCCCCCcceeeeEe---eccccEEEEee
Q 010784          392 VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM-LANSLLCNYPEEADISTGCSAM---AVSGCRIVTAS  457 (501)
Q Consensus       392 ~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~---s~~g~~l~s~~  457 (501)
                      ......++++++ .++++...++.|..++..... .+...     .......++++|   ++|++.|+.++
T Consensus       207 ~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~-----~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         207 QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQA-----EQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             SCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECG-----GGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             CCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEec-----CCCCCCceEEEEcCCCCCCCEEEEEC
Confidence            334567999999 888877788999999875322 22222     112345788999   67888887655

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.05  E-value=1.3e-07  Score=81.34  Aligned_cols=233  Identities=9%  Similarity=0.007  Sum_probs=144.9

Q ss_pred             CCceEEeeCCcEEEee-cCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          112 PHDHILLDNNDIFSTQ-GSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~-g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      .+..|+++++|.+.++ .+..+.+..++............+. .....+++.+             +++++++....+.+
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~-------------~g~i~v~d~~~~~i   80 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDG-------------AGTVYVTDFNNRVV   80 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECT-------------TCCEEEEETTTEEE
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcC-------------CCCEEEeeeeecee
Confidence            4688999999886554 5566777777665432222222222 2356778887             78888888877788


Q ss_pred             EEecCCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784          191 RLWWKGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH  269 (501)
Q Consensus       191 ~vwd~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~  269 (501)
                      ++++.+.....+. .......++++.    ++++++++-..+..+..++......     ...... .......+++.+ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~p~~iavd----~~g~i~v~d~~~~~~~~~~~~~~~~-----~~~~~~-~~~~p~~i~~~~-  149 (260)
T d1rwia_          81 TLAAGSNNQTVLPFDGLNYPEGLAVD----TQGAVYVADRGNNRVVKLAAGSKTQ-----TVLPFT-GLNDPDGVAVDN-  149 (260)
T ss_dssp             EECTTCSCCEECCCCSCCSEEEEEEC----TTCCEEEEEGGGTEEEEECTTCSSC-----EECCCC-SCCSCCEEEECT-
T ss_pred             eeeeeccceeeeeeeeeeeccccccc----ccceeEeecccccccccccccccee-----eeeeec-ccCCcceeeecC-
Confidence            7776332222221 223456788884    7888887766667777777655432     111112 223456888887 


Q ss_pred             CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE
Q 010784          270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH  349 (501)
Q Consensus       270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~  349 (501)
                      +++++++...++.|..+|........                                            .....-....
T Consensus       150 ~g~~~v~~~~~~~i~~~d~~~~~~~~--------------------------------------------~~~~~~~~p~  185 (260)
T d1rwia_         150 SGNVYVTDTDNNRVVKLEAESNNQVV--------------------------------------------LPFTDITAPW  185 (260)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTCCEEE--------------------------------------------CCCSSCCSEE
T ss_pred             CCCEeeeccccccccccccccceeee--------------------------------------------eeccccCCCc
Confidence            66788887888889998876542110                                            0011234567


Q ss_pred             EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-eEEEEecCCCcEEEEeC
Q 010784          350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWET  420 (501)
Q Consensus       350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~  420 (501)
                      .+++.++|+++++....+ |..++......       ..+ ...-.....|+++++ .++++-..+++|+.++.
T Consensus       186 gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-------~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         186 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-------TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEECTTCCEEEEETTTTEEEEECTTCSCC-------EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             cceeeeeeeeeeeecCCCEEEEEeCCCCeE-------EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            899999999988888776 88887654332       111 122245678999988 77777666777776654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=5.1e-07  Score=78.32  Aligned_cols=234  Identities=11%  Similarity=0.097  Sum_probs=153.8

Q ss_pred             CceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc------CCcceeEEEeeccCcCcccccCCCCcCcEEEE-ee
Q 010784          113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD------HKARITCMRLFPLHETSLFRSEPQRTENVLVT-SS  185 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~------h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~  185 (501)
                      +..|+++++|.++++-...+.|++||.+  .+.+..+..      ....-..+++.+.            .+..+++ .+
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~--G~~~~~~~~~~~~~~~~~~p~~~~~~~~------------~~~~~~~~~~   90 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRN------------SGDIIVTERS   90 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETT------------TTEEEEEECG
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC--CCEEEEecccCCCccccccccccccccc------------ccccceeccC
Confidence            6789999999988887788999999976  344444421      1112344555542            2444443 44


Q ss_pred             CCCceEEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec--cCCCCce
Q 010784          186 CDHSIRLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL--YGHEKPI  261 (501)
Q Consensus       186 ~dg~i~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v  261 (501)
                      .++.|.+++ .+.....+. ........+++.    +++.++++....+.+.+++.+..       .+..+  ..+....
T Consensus        91 ~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd----~~G~i~v~~~~~~~~~~~~~~g~-------~~~~~g~~~~~~~~  159 (279)
T d1q7fa_          91 PTHQIQIYNQYGQFVRKFGATILQHPRGVTVD----NKGRIIVVECKVMRVIIFDQNGN-------VLHKFGCSKHLEFP  159 (279)
T ss_dssp             GGCEEEEECTTSCEEEEECTTTCSCEEEEEEC----TTSCEEEEETTTTEEEEECTTSC-------EEEEEECTTTCSSE
T ss_pred             CccccccccccccceeecCCCcccccceeccc----cCCcEEEEeeccceeeEeccCCc-------eeeccccccccccc
Confidence            556788888 666666553 234556777774    78888888777778888876543       23333  3455667


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      ..+++.+ +++++++....+.|++||.... .+                                            ..+
T Consensus       160 ~~i~~d~-~g~i~v~d~~~~~V~~~d~~G~-~~--------------------------------------------~~~  193 (279)
T d1q7fa_         160 NGVVVND-KQEIFISDNRAHCVKVFNYEGQ-YL--------------------------------------------RQI  193 (279)
T ss_dssp             EEEEECS-SSEEEEEEGGGTEEEEEETTCC-EE--------------------------------------------EEE
T ss_pred             ceeeecc-ceeEEeeeccccceeeeecCCc-ee--------------------------------------------eee
Confidence            7888885 6778888888899999986532 11                                            111


Q ss_pred             --ccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCccccc--CcccCeEEEEecCC-eEEEEecCCCc
Q 010784          342 --AICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELD--GHVGSVTQLHMDPY-KIVTGGRDDLR  414 (501)
Q Consensus       342 --~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~-~~l~~gs~dg~  414 (501)
                        .+.......|++.++|+++++-. .+. |.+|+.. ++.      +.++.  ........|++.|+ .++++. .+++
T Consensus       194 g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~------~~~~~~~~~~~~p~~vav~~dG~l~V~~-~n~~  265 (279)
T d1q7fa_         194 GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQL------ISALESKVKHAQCFDVALMDDGSVVLAS-KDYR  265 (279)
T ss_dssp             SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCE------EEEEEESSCCSCEEEEEEETTTEEEEEE-TTTE
T ss_pred             cccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCE------EEEEeCCCCCCCEeEEEEeCCCcEEEEe-CCCe
Confidence              12234567899999999888765 344 8899843 332      23332  22335788999999 877764 7899


Q ss_pred             EEEEeCCCccc
Q 010784          415 INIWETDTGML  425 (501)
Q Consensus       415 i~iwd~~~~~~  425 (501)
                      |++|......+
T Consensus       266 v~~fr~~~~~~  276 (279)
T d1q7fa_         266 LYIYRYVQLAP  276 (279)
T ss_dssp             EEEEECSCCCC
T ss_pred             EEEEEeeeecC
Confidence            99999876543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=3.6e-07  Score=78.38  Aligned_cols=231  Identities=10%  Similarity=-0.006  Sum_probs=138.7

Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEe-eCCCceEEecCCce---eeeccCCCCceEEEEeeecCCCCCCEEEEeeC
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTS-SCDHSIRLWWKGSC---QRCFKGHNGPVSTLSDKLLGDGSGKILASGGE  230 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~---~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~  230 (501)
                      .-..|++.+             +|+++++. +..+.+..++.+..   .....+ ......+++.    ++++++++...
T Consensus        15 ~P~~vavd~-------------dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~----~~g~i~v~d~~   76 (260)
T d1rwia_          15 SPSGVAVDS-------------AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVD----GAGTVYVTDFN   76 (260)
T ss_dssp             CEEEEEECT-------------TCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEEC----TTCCEEEEETT
T ss_pred             CCCEEEEcC-------------CCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEc----CCCCEEEeeee
Confidence            347888888             78866654 45577887872222   222222 2234667775    78888887777


Q ss_pred             CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784          231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV  310 (501)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  310 (501)
                      ++.+++++-.+...      ..... .......+++.+ +++++++-..+..+..++........               
T Consensus        77 ~~~i~~~~~~~~~~------~~~~~-~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~---------------  133 (260)
T d1rwia_          77 NRVVTLAAGSNNQT------VLPFD-GLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTV---------------  133 (260)
T ss_dssp             TEEEEECTTCSCCE------ECCCC-SCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEE---------------
T ss_pred             eceeeeeeecccee------eeeee-eeeecccccccc-cceeEeeccccccccccccccceeee---------------
Confidence            66776665444321      22222 234567888876 56666666566666666654432100               


Q ss_pred             eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc
Q 010784          311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD  389 (501)
Q Consensus       311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~  389 (501)
                                                  ... ........++++++++++++...+. |..+|.......      ....
T Consensus       134 ----------------------------~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~------~~~~  178 (260)
T d1rwia_         134 ----------------------------LPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV------VLPF  178 (260)
T ss_dssp             ----------------------------CCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE------ECCC
T ss_pred             ----------------------------eee-cccCCcceeeecCCCCEeeeccccccccccccccceee------eeec
Confidence                                        000 0122346789999999888877666 999997764321      1112


Q ss_pred             CcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784          390 GHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD  468 (501)
Q Consensus       390 ~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~  468 (501)
                      ..-.....|+++++ .++++....+.|..++..... ...+.    ...-.....++++++|.++++-.  .+++|+..+
T Consensus       179 ~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~----~~~~~~P~~i~~d~~g~l~vad~--~~~rI~~i~  251 (260)
T d1rwia_         179 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLP----FTGLNTPLAVAVDSDRTVYVADR--GNDRVVKLT  251 (260)
T ss_dssp             SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECC----CCSCCCEEEEEECTTCCEEEEEG--GGTEEEEEC
T ss_pred             cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEc----cCCCCCeEEEEEeCCCCEEEEEC--CCCEEEEEe
Confidence            33455788999998 888888788889888865432 22221    11224567899999998777755  346665444

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.94  E-value=3.3e-07  Score=80.64  Aligned_cols=224  Identities=8%  Similarity=-0.000  Sum_probs=143.5

Q ss_pred             CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784          111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI  190 (501)
Q Consensus       111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  190 (501)
                      .-+..+++++||.++++...++.|..++....   ...+......+.+++|.+             +|+++++...++.+
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---~~~~~~~~~~~~gla~~~-------------dG~l~v~~~~~~~~   91 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTS-------------NGDLVATGWNADSI   91 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECT-------------TSCEEEEEECTTSC
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC---EEEEEcCCCCcceEEEcC-------------CCCeEEEecCCceE
Confidence            34778999999999999999999888886632   334555667899999999             88999998888888


Q ss_pred             EEec---CCceeeec--cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc----ccceeeccCCCCce
Q 010784          191 RLWW---KGSCQRCF--KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ----QALKATLYGHEKPI  261 (501)
Q Consensus       191 ~vwd---~~~~~~~~--~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~v  261 (501)
                      .+|+   .......+  .........+.+.    ++++++++-+.++.+..++...+.....    ..............
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~----~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1          92 PVVSLVKSDGTVETLLTLPDAIFLNGITPL----SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEES----SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             EEEEecccccceeeccccCCccccceeEEc----cCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccc
Confidence            8886   11111111  1234567888885    7888888888888888888776532000    00000111122234


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      ..+.+.  +..++++.+..+.|..+++..........                                         ..
T Consensus       168 ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~-----------------------------------------~~  204 (302)
T d2p4oa1         168 NGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPE-----------------------------------------IF  204 (302)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCE-----------------------------------------EE
T ss_pred             cccccc--CCceeeecCCCCeEEeccccccccccccc-----------------------------------------cc
Confidence            556654  56677778888888888876543211100                                         00


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEe---cCC
Q 010784          342 AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM---DPY  403 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~  403 (501)
                       ........++++++|+++++...++ |..++......     .+......-...++++|   +++
T Consensus       205 -~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~-----~~~~~~~~~~~pt~vafg~~~~D  264 (302)
T d2p4oa1         205 -VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTT-----IIAQAEQGVIGSTAVAFGQTEGD  264 (302)
T ss_dssp             -EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEE-----EEECGGGTCTTEEEEEECCSTTT
T ss_pred             -cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEE-----EEEecCCCCCCceEEEEcCCCCC
Confidence             0122345689999999888877666 88887754321     12233333345789999   555

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.93  E-value=8.3e-07  Score=80.22  Aligned_cols=264  Identities=9%  Similarity=-0.002  Sum_probs=138.7

Q ss_pred             CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCceeeec-cCCCCceEEEEeeecCCCCCCE--E
Q 010784          152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCF-KGHNGPVSTLSDKLLGDGSGKI--L  225 (501)
Q Consensus       152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~~~~-~~h~~~v~~l~~s~~~~~~~~~--l  225 (501)
                      ....+.-|+|++             ++++|.++.. +.+..|.   .+...... .........+.++    ++++.  +
T Consensus        38 ~~~~~s~la~s~-------------d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~----~~~~~~~v   99 (365)
T d1jofa_          38 QDEPISWMTFDH-------------ERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDAD----TNTRAIFL   99 (365)
T ss_dssp             TTCCCSEEEECT-------------TSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTT----SCCEEEEE
T ss_pred             CCCCCCEEEEcC-------------CCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEEC----CCCCEEEE
Confidence            444567799998             7888887764 5677774   33222211 1112223344443    56663  3


Q ss_pred             EEee-CCCcEEEEeccCCCcccc----------cccee-eccCCCCceeEEEEeecCCeEEEEEe-CCCeEEEEECCCCc
Q 010784          226 ASGG-EDATVRLWSLSSSGKRGQ----------QALKA-TLYGHEKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTSTSS  292 (501)
Q Consensus       226 ~sg~-~dg~i~iwd~~~~~~~~~----------~~~~~-~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~~~  292 (501)
                      +++. ..+.|..+.+........          ..... ........+.++.|+| ++++++++. ....|.+|+.....
T Consensus       100 ~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g  178 (365)
T d1jofa_         100 LAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASG  178 (365)
T ss_dssp             EECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTS
T ss_pred             EEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCC
Confidence            3322 234555544332111000          00011 1111223467899998 566555554 45678888765432


Q ss_pred             cccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEE
Q 010784          293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMT  370 (501)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~i  370 (501)
                      .+...                                      .. ............++|+|+++++.+.. .++ |.+
T Consensus       179 ~~~~~--------------------------------------~~-~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v  219 (365)
T d1jofa_         179 EVELV--------------------------------------GS-VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE  219 (365)
T ss_dssp             CEEEE--------------------------------------EE-EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ceeec--------------------------------------cc-eeecCCCCceEEEEECCCCceEEEeccCCCEEEE
Confidence            11000                                      00 01112345678999999999887766 445 999


Q ss_pred             EecCCCCCCCC-------------CCCcccccCcccCeEEEEecCC-eEEEEe-cCC-----CcEEEEeCCCccccccc-
Q 010784          371 WDIRRSQDAVK-------------PQPMAELDGHVGSVTQLHMDPY-KIVTGG-RDD-----LRINIWETDTGMLANSL-  429 (501)
Q Consensus       371 wd~~~~~~~~~-------------~~~~~~~~~h~~~v~~l~~~~~-~~l~~g-s~d-----g~i~iwd~~~~~~~~~~-  429 (501)
                      |++...+....             .........+......+.++|+ +++.++ ..+     +.|..|++.....+... 
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~  299 (365)
T d1jofa_         220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL  299 (365)
T ss_dssp             EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred             EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe
Confidence            99876542200             0000011122334567899999 555443 222     23777777653222211 


Q ss_pred             ccCCCCCCCcceeeeEeec-cccEEEEeecCCCceEEEeeccCCcc
Q 010784          430 LCNYPEEADISTGCSAMAV-SGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       430 ~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      ..............++++| +|++|+++.. .++.|.+|+++....
T Consensus       300 ~~~~~~~~G~~p~~i~~~p~~G~~l~va~~-~s~~v~v~~~~~~~l  344 (365)
T d1jofa_         300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDD-QEGWLEIYRWKDEFL  344 (365)
T ss_dssp             EEEECSSCCTTCCCEEECTTCTTEEEEECS-SSCEEEEEEEETTEE
T ss_pred             EeeEEEcCCCCccEEEecCCCCCEEEEEeC-CCCeEEEEEEeCCcC
Confidence            1111111234457799998 8998888865 679999999876653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=1.2e-06  Score=75.81  Aligned_cols=235  Identities=10%  Similarity=0.159  Sum_probs=148.5

Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCC------CCceEEEEeeecCCCCCCEEEE
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGH------NGPVSTLSDKLLGDGSGKILAS  227 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h------~~~v~~l~~s~~~~~~~~~l~s  227 (501)
                      .-..|++.+             +++++++-..++.|++|| .++.+..+...      ...-..+++.   +..+..+++
T Consensus        24 ~P~gvavd~-------------dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~~~   87 (279)
T d1q7fa_          24 EPSGVAVNA-------------QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVV---RNSGDIIVT   87 (279)
T ss_dssp             CEEEEEECT-------------TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEE---TTTTEEEEE
T ss_pred             CccEEEEcC-------------CCCEEEEECCCCEEEEEeCCCCEEEEecccCCCccccccccccccc---cccccccee
Confidence            357888888             789888888889999999 77766655321      1122344442   233444443


Q ss_pred             -eeCCCcEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceec
Q 010784          228 -GGEDATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV  305 (501)
Q Consensus       228 -g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~  305 (501)
                       .+.++.|..++....       ....+. ........+++.+ ++.++++....+.+.+++.... .            
T Consensus        88 ~~~~~~~i~~~~~~g~-------~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g~-~------------  146 (279)
T d1q7fa_          88 ERSPTHQIQIYNQYGQ-------FVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGN-V------------  146 (279)
T ss_dssp             ECGGGCEEEEECTTSC-------EEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSC-E------------
T ss_pred             ccCCcccccccccccc-------ceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccCCc-e------------
Confidence             344557777765432       233332 2344556777775 5666666666666766664322 1            


Q ss_pred             CCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee--ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784          306 PGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP--AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKP  382 (501)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~  382 (501)
                                                      +..+  ..+......+++.++++++++..... |++||.... .    
T Consensus       147 --------------------------------~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~-~----  189 (279)
T d1q7fa_         147 --------------------------------LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-Y----  189 (279)
T ss_dssp             --------------------------------EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-E----
T ss_pred             --------------------------------eecccccccccccceeeeccceeEEeeeccccceeeeecCCc-e----
Confidence                                            1111  22445677889999998888888777 999997532 1    


Q ss_pred             CCcccc--cCcccCeEEEEecCC-eEEEEec-CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784          383 QPMAEL--DGHVGSVTQLHMDPY-KIVTGGR-DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       383 ~~~~~~--~~h~~~v~~l~~~~~-~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                        +.++  .+.......|+++++ +++++-+ .++.|.+|+ .+|+.+.++....   .......+++.+||.++++ . 
T Consensus       190 --~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~---~~~~p~~vav~~dG~l~V~-~-  261 (279)
T d1q7fa_         190 --LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV---KHAQCFDVALMDDGSVVLA-S-  261 (279)
T ss_dssp             --EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS---CCSCEEEEEEETTTEEEEE-E-
T ss_pred             --eeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC---CCCCEeEEEEeCCCcEEEE-e-
Confidence              2333  234456789999999 8777743 355799998 4688777764321   1235678999999976554 4 


Q ss_pred             CCCceEEEeeccCC
Q 010784          459 GEPGLLQFRDFSNA  472 (501)
Q Consensus       459 d~~g~i~~w~~~~~  472 (501)
                       .+..|++|.+...
T Consensus       262 -~n~~v~~fr~~~~  274 (279)
T d1q7fa_         262 -KDYRLYIYRYVQL  274 (279)
T ss_dssp             -TTTEEEEEECSCC
T ss_pred             -CCCeEEEEEeeee
Confidence             4588999998764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.92  E-value=1.2e-07  Score=85.99  Aligned_cols=271  Identities=6%  Similarity=-0.064  Sum_probs=141.6

Q ss_pred             cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcE--EEEee
Q 010784          109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENV--LVTSS  185 (501)
Q Consensus       109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~--l~s~~  185 (501)
                      ...+++.|+++++++++.+... +.+..|.+.......... .........+.+++             +++.  ++++.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-------------~~~~~~v~~a~  103 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-------------NTRAIFLLAAK  103 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-------------CCEEEEEEECS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-------------CCCEEEEEEec
Confidence            3445788999999988876543 456666665422222111 11112233444554             6663  33332


Q ss_pred             -CCCceEEec---CCceee----------------eccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCc
Q 010784          186 -CDHSIRLWW---KGSCQR----------------CFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGK  244 (501)
Q Consensus       186 -~dg~i~vwd---~~~~~~----------------~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~  244 (501)
                       ..++|..+.   .+....                ........+.++.|+    |+|+++++++. ...|.+|+......
T Consensus       104 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~s----PdG~~l~v~d~g~d~v~~~~~~~~g~  179 (365)
T d1jofa_         104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD----PTETYLYSADLTANKLWTHRKLASGE  179 (365)
T ss_dssp             STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC----TTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             CCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEEC----CCCCEEEEeeCCCCEEEEEEccCCCc
Confidence             234554432   111110                011123347889996    89998888764 34788887765432


Q ss_pred             cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784          245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG  324 (501)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (501)
                      ....... .........+.+.|+|+.....++.-.++.|.+|++...+....... .......                 
T Consensus       180 ~~~~~~~-~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~-~~~~~~~-----------------  240 (365)
T d1jofa_         180 VELVGSV-DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH-HSFPLIP-----------------  240 (365)
T ss_dssp             EEEEEEE-ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-EEEESSC-----------------
T ss_pred             eeeccce-eecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEe-eeecccc-----------------
Confidence            1100011 11223456788999985444456666789999999876543211100 0000000                 


Q ss_pred             CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc--CC----c-EEEEecCCCCCCCCCCCcccccCcccCeEE
Q 010784          325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG--IG----K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQ  397 (501)
Q Consensus       325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~d----~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  397 (501)
                             ............+......+.++|+|++|+++.  .+    . |..|++.....+.....+............
T Consensus       241 -------~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~  313 (365)
T d1jofa_         241 -------PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA  313 (365)
T ss_dssp             -------TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC
T ss_pred             -------ccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccE
Confidence                   000000000111233456789999999988874  11    2 666666553322000111111222345677


Q ss_pred             EEecC-C--eEEEEecCCCcEEEEeCCCc
Q 010784          398 LHMDP-Y--KIVTGGRDDLRINIWETDTG  423 (501)
Q Consensus       398 l~~~~-~--~~l~~gs~dg~i~iwd~~~~  423 (501)
                      ++++| +  .++++...++.|.+|++...
T Consensus       314 i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         314 VSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            89998 4  56677778899999987543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.91  E-value=2.6e-06  Score=75.02  Aligned_cols=249  Identities=9%  Similarity=0.019  Sum_probs=144.2

Q ss_pred             eEEEecCCCCceEEeeCCcEEEeecCC-------eeeEEEEecccccccceecccC----CcceeEEEeeccCcCccccc
Q 010784          104 VCFYSVAKPHDHILLDNNDIFSTQGSS-------IQNIKIDNFLSESYYRATLSDH----KARITCMRLFPLHETSLFRS  172 (501)
Q Consensus       104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~-------d~~i~vw~~~~~~~~~~~~~~h----~~~V~~~~~~~~~~~~~~~~  172 (501)
                      ......-..+..++++++|.++++...       ++.|..||..++ .........    .+.-..++|.+         
T Consensus        11 ~~v~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~-~~~~~~~~~~~~~~g~P~Gl~~~~---------   80 (314)
T d1pjxa_          11 TKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG-KKTVICKPEVNGYGGIPAGCQCDR---------   80 (314)
T ss_dssp             EEEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC-CEEEEECCEETTEECCEEEEEECS---------
T ss_pred             EEeecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCC-cEEEEECCccccCCCcceeEEEeC---------
Confidence            333334445788999999988876443       356888887764 222211111    12246788888         


Q ss_pred             CCCCcCcEEEEeeCCCceEEec-CCceeeeccC-CC----CceEEEEeeecCCCCCCEEEEeeC---------------C
Q 010784          173 EPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKG-HN----GPVSTLSDKLLGDGSGKILASGGE---------------D  231 (501)
Q Consensus       173 ~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~-h~----~~v~~l~~s~~~~~~~~~l~sg~~---------------d  231 (501)
                          +++.++++...+.|...+ .+.....+.. ..    ...+.+++.    ++|++.++-..               .
T Consensus        81 ----dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d----~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          81 ----DANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD----YEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             ----SSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEEC----TTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ----CCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEEC----CCCCEEEecCccCcccccccceeccCC
Confidence                788777777767787777 4433322221 11    124677874    78887776422               1


Q ss_pred             CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC----eEEEEEeCCCeEEEEECCCCccccceecccceecCC
Q 010784          232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS----FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG  307 (501)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~----~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~  307 (501)
                      |.|..++.+  ..      ...+...-..-+.++|++...    .++++-+..+.|..||+.....+...          
T Consensus       153 G~v~~~~~d--g~------~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~----------  214 (314)
T d1pjxa_         153 GSIYCFTTD--GQ------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK----------  214 (314)
T ss_dssp             EEEEEECTT--SC------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE----------
T ss_pred             ceEEEEeec--Cc------eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee----------
Confidence            223333322  11      111111122235677776322    24455566677777776432111000          


Q ss_pred             CceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc-CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCc
Q 010784          308 VPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI-CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPM  385 (501)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~  385 (501)
                                                  +....+.. .......+++..+|+++++....+ |.+||...++..      
T Consensus       215 ----------------------------~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~------  260 (314)
T d1pjxa_         215 ----------------------------KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK------  260 (314)
T ss_dssp             ----------------------------EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS------
T ss_pred             ----------------------------eEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEE------
Confidence                                        00111111 123456899999999888776666 999998876543      


Q ss_pred             ccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCC
Q 010784          386 AELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT  422 (501)
Q Consensus       386 ~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~  422 (501)
                      ..+......+++++|.|+  .++++.+.+|.|...++..
T Consensus       261 ~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         261 MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            445555567899999998  5888877889898888753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.90  E-value=8.1e-07  Score=78.34  Aligned_cols=124  Identities=11%  Similarity=0.121  Sum_probs=80.7

Q ss_pred             cEEEEEEcCCCc-----EEEEEcCCc-EEEEecCCCCCCCCCCCcccccC-cccCeEEEEecCC-eEEEEecCCCcEEEE
Q 010784          347 ILHSFSIMPSKS-----LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG-HVGSVTQLHMDPY-KIVTGGRDDLRINIW  418 (501)
Q Consensus       347 ~v~~v~~~~~~~-----~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~-~~l~~gs~dg~i~iw  418 (501)
                      ..+.++|+|++.     ++++-+..+ |..||+.....+...+....+.+ +......++++.+ +++++....+.|.+|
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            346788988754     445555555 88888764322200011112222 1223567899988 887776678999999


Q ss_pred             eCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccce
Q 010784          419 ETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPV  476 (501)
Q Consensus       419 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~  476 (501)
                      |.+.++.+..+.     .+....++++|.||++.|+.... ..|.|...++...+...
T Consensus       253 dp~~g~~~~~i~-----~p~~~~t~~afg~d~~~lyVt~~-~~g~i~~~~~~~~G~~~  304 (314)
T d1pjxa_         253 GPDGGQPKMRIR-----CPFEKPSNLHFKPQTKTIFVTEH-ENNAVWKFEWQRNGKKQ  304 (314)
T ss_dssp             CTTCBSCSEEEE-----CSSSCEEEEEECTTSSEEEEEET-TTTEEEEEECSSCBCCC
T ss_pred             eCCCCEEEEEEE-----CCCCCEEEEEEeCCCCEEEEEEC-CCCcEEEEECCCCChhh
Confidence            998888776663     22456789999999975544433 56889988887766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.9e-06  Score=74.12  Aligned_cols=234  Identities=9%  Similarity=0.017  Sum_probs=135.0

Q ss_pred             eEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC-Cc--eEEec-CCceeeeccCCCCc
Q 010784          133 NIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-HS--IRLWW-KGSCQRCFKGHNGP  208 (501)
Q Consensus       133 ~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-g~--i~vwd-~~~~~~~~~~h~~~  208 (501)
                      .|.|.|...  .-.+.+..+...+..-+|||             ||+.||..... +.  +.+.+ .+.....+..+.+.
T Consensus        20 ~l~i~d~dG--~~~~~l~~~~~~~~sP~wSP-------------DGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (269)
T d2hqsa1          20 ELRVSDYDG--YNQFVVHRSPQPLMSPAWSP-------------DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH   84 (269)
T ss_dssp             EEEEEETTS--CSCEEEEEESSCEEEEEECT-------------TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred             EEEEEcCCC--CCcEEEecCCCceeeeEECC-------------CCCEEEEEEeeccCcceeeeecccCceeEEeeeecc
Confidence            566767663  44455556677788999999             88988865443 32  43444 44455566667788


Q ss_pred             eEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeE--EE
Q 010784          209 VSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV--RV  285 (501)
Q Consensus       209 v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v--~v  285 (501)
                      .....|+    ++|..++.... ++...++.......     ................+++.....+++...+|..  .+
T Consensus        85 ~~~~~~s----pdg~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~  155 (269)
T d2hqsa1          85 NGAPAFS----PDGSKLAFALSKTGSLNLYVMDLASG-----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK  155 (269)
T ss_dssp             EEEEEEC----TTSSEEEEEECTTSSCEEEEEETTTC-----CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cccceec----CCCCeeeEeeecCCccceeecccccc-----cceeeeeccccccccccccccccceecccccCCceEee
Confidence            8889997    78888776543 33333333333221     1222233333334445555455555665555544  44


Q ss_pred             EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC
Q 010784          286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI  365 (501)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  365 (501)
                      .++..+..                                             ..............++|+++.++..+.
T Consensus       156 ~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         156 VNINGGAP---------------------------------------------QRITWEGSQNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             EETTSSCC---------------------------------------------EECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             eecccccc---------------------------------------------eeeecccccccccccccccceeEEEee
Confidence            44443321                                             111223455677889999998887763


Q ss_pred             -Cc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEE-EEec--CCCcEEEEeCCCcccccccccCCCCCC
Q 010784          366 -GK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIV-TGGR--DDLRINIWETDTGMLANSLLCNYPEEA  437 (501)
Q Consensus       366 -d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l-~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~  437 (501)
                       ++   +.+.+...+.        .....+........|+|+ +.| .+..  ....|.++++..+.. ..+.     ..
T Consensus       191 ~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt-----~~  256 (269)
T d2hqsa1         191 NGGQQHIAKQDLATGG--------VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLP-----AT  256 (269)
T ss_dssp             CSSCEEEEEEETTTCC--------EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECC-----CS
T ss_pred             cCCceeeeEeeccccc--------ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEe-----CC
Confidence             33   4444544432        223334556678899999 444 4332  234688999976654 3442     23


Q ss_pred             CcceeeeEeecc
Q 010784          438 DISTGCSAMAVS  449 (501)
Q Consensus       438 ~~~v~~~~~s~~  449 (501)
                      ...+...+|||-
T Consensus       257 ~g~~~~p~WSP~  268 (269)
T d2hqsa1         257 DGQVKFPAWSPY  268 (269)
T ss_dssp             SSEEEEEEECCC
T ss_pred             CCcEEeEEeCCC
Confidence            456777889883

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.5e-06  Score=73.31  Aligned_cols=234  Identities=11%  Similarity=0.059  Sum_probs=129.8

Q ss_pred             ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC-C--cEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784          189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED-A--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      .|.|-| .|...+.+..+...+..-+||    |||+.||-.... +  .+.+.+...+.       ...+..+.......
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wS----PDGk~IAf~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~   88 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWS----PDGSKLAYVTFESGRSALVIQTLANGA-------VRQVASFPRHNGAP   88 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEEC----TTSSEEEEEECTTSSCEEEEEETTTCC-------EEEEECCSSCEEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEEC----CCCCEEEEEEeeccCcceeeeecccCc-------eeEEeeeecccccc
Confidence            355556 565666665667788889997    899999865433 2  35555555543       34555677788888


Q ss_pred             EEeecCCeEEEEEe-CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784          265 SVAGHKSFLLVTIS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI  343 (501)
Q Consensus       265 ~~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  343 (501)
                      .|+| ++..++... .++...++.......                                          .. .....
T Consensus        89 ~~sp-dg~~i~~~~~~~~~~~~~~~~~~~~------------------------------------------~~-~~~~~  124 (269)
T d2hqsa1          89 AFSP-DGSKLAFALSKTGSLNLYVMDLASG------------------------------------------QI-RQVTD  124 (269)
T ss_dssp             EECT-TSSEEEEEECTTSSCEEEEEETTTC------------------------------------------CE-EECCC
T ss_pred             eecC-CCCeeeEeeecCCccceeecccccc------------------------------------------cc-eeeee
Confidence            9998 455554433 333333322221110                                          00 11111


Q ss_pred             CCCcEEEEEEcCCCcEEEEEc-CCc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEE
Q 010784          344 CKPILHSFSIMPSKSLICTGG-IGK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINI  417 (501)
Q Consensus       344 ~~~~v~~v~~~~~~~~l~~~~-~d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~i  417 (501)
                      .........+++++..+...+ .++   |.+.++.....       ..+..+........|+|+  .++......+...+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i  197 (269)
T d2hqsa1         125 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI  197 (269)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred             ccccccccccccccccceecccccCCceEeeeecccccc-------eeeecccccccccccccccceeEEEeecCCceee
Confidence            233334455666665544443 333   66666665432       333344566777889999  44444445555555


Q ss_pred             EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC-CCceEEEeeccCCccceeecCCCCcee--eecc
Q 010784          418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSNATCPVLKHEVQNDSK--FWGP  490 (501)
Q Consensus       418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~~~~~~~~s~~~d~~~~--~w~~  490 (501)
                      |..........+.     ..........|||||+.|+..+.. ....|+++++..+....++.. ++.++  .|.+
T Consensus       198 ~~~~~~~~~~~~~-----~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~-~g~~~~p~WSP  267 (269)
T d2hqsa1         198 AKQDLATGGVQVL-----SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT-DGQVKFPAWSP  267 (269)
T ss_dssp             EEEETTTCCEEEC-----CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS-SSEEEEEEECC
T ss_pred             eEeecccccceEe-----ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCC-CCcEEeEEeCC
Confidence            5443322222221     123445677899999998765532 345788888877665444443 44444  4754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.3e-05  Score=72.90  Aligned_cols=329  Identities=11%  Similarity=0.001  Sum_probs=164.5

Q ss_pred             EeeCCcEEEeecCCeeeEEEEecccccccceeccc---CCcceeEEEeeccCcCcccccCCCCcCcEEEEee--------
Q 010784          117 LLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD---HKARITCMRLFPLHETSLFRSEPQRTENVLVTSS--------  185 (501)
Q Consensus       117 ~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~---h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--------  185 (501)
                      .|.+++.++.. ..+|.+.+|++.++.. ...+..   ..-.+....|||             |+++++.+.        
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~Sp-------------D~~~vl~~~~~~~~~r~   87 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTS-TVLIEGKKIESLRAIRYEISP-------------DREYALFSYNVEPIYQH   87 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCC-EEEECTTTTTTTTCSEEEECT-------------TSSEEEEEESCCCCSSS
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCE-EEEEcCccccccccceeEECC-------------CCCeEEEEEcccceeEe
Confidence            45666666543 4467899999987532 222222   223567777888             788877653        


Q ss_pred             -CCCceEEec-CCceeeec---cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784          186 -CDHSIRLWW-KGSCQRCF---KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP  260 (501)
Q Consensus       186 -~dg~i~vwd-~~~~~~~~---~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  260 (501)
                       ..+.+.++| .......+   ......+....||    |+|+.||-.. ++.|.+.+..++..     ...+..+....
T Consensus        88 s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wS----PDG~~iafv~-~~nl~~~~~~~~~~-----~~lt~~g~~~~  157 (465)
T d1xfda1          88 SYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG----PKGQQLIFIF-ENNIYYCAHVGKQA-----IRVVSTGKEGV  157 (465)
T ss_dssp             CCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC----SSTTCEEEEE-TTEEEEESSSSSCC-----EEEECCCBTTT
T ss_pred             eccccEEEEEccCCceeeccCccCCccccceeeec----cCCceEEEEe-cceEEEEecCCCce-----EEEecccCcce
Confidence             346677778 22222222   2334455567786    8999988765 56788888776543     11111121111


Q ss_pred             -----------------eeEEEEeecCCeEEEEEe-CCCeEEEEECC---------------------------------
Q 010784          261 -----------------IKLMSVAGHKSFLLVTIS-KDSKVRVWDTS---------------------------------  289 (501)
Q Consensus       261 -----------------v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~---------------------------------  289 (501)
                                       -..+.|+| +++.|+... .+..|..+.+.                                 
T Consensus       158 i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~  236 (465)
T d1xfda1         158 IYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN  236 (465)
T ss_dssp             EEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred             eeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecC
Confidence                             14677998 677777654 33434444332                                 


Q ss_pred             CCccccceecccce-ecCCCceeeecCCCeEEEEe--C--C---cEEEEEcCCCceEeeeccC-CCcE----EEEEEcCC
Q 010784          290 TSSAVRSSCCVGMT-SVPGVPVDMKCHESMLYIAS--G--S---SVVTIDLRTMQKVMTPAIC-KPIL----HSFSIMPS  356 (501)
Q Consensus       290 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~--~---~i~~~d~~~~~~~~~~~~~-~~~v----~~v~~~~~  356 (501)
                      ++............ ........+.+.++..+++.  .  .   .+.++|..+++....+... .+.|    ....|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~d  316 (465)
T d1xfda1         237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD  316 (465)
T ss_dssp             SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred             CCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccC
Confidence            21110000000000 00001122344444443332  1  1   6888899988776544322 2222    34578899


Q ss_pred             CcEEE---EEc---CCcEEEEecCCCCCCCCCCCcccccCcccCeEEE-EecCC--eEEEEecCCC--cEEEEeC--CCc
Q 010784          357 KSLIC---TGG---IGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQL-HMDPY--KIVTGGRDDL--RINIWET--DTG  423 (501)
Q Consensus       357 ~~~l~---~~~---~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~--~~l~~gs~dg--~i~iwd~--~~~  423 (501)
                      |+.++   ...   .+.++..++...........+..+....-.|..+ .|+..  .++.++..++  .-++|.+  ..+
T Consensus       317 g~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~  396 (465)
T d1xfda1         317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN  396 (465)
T ss_dssp             SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred             CCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCC
Confidence            87432   221   2236555543221110012223343334456665 57776  5555554432  3345544  333


Q ss_pred             ccccccccCCCCCCCcceeeeEeeccccEEEEeecC-CCceEEEeeccCCc
Q 010784          424 MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSNAT  473 (501)
Q Consensus       424 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~~~~  473 (501)
                      .....+.+.  .........+.|||+|++++..... +.-.+.+++...+.
T Consensus       397 ~~~~~lt~~--~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~  445 (465)
T d1xfda1         397 FNRQCLSCD--LVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKK  445 (465)
T ss_dssp             CCCBCSSTT--SSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCC
T ss_pred             Ccceeeccc--cCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCC
Confidence            333333211  1223456788999999998865432 22345566554443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.65  E-value=3e-05  Score=68.22  Aligned_cols=230  Identities=11%  Similarity=0.016  Sum_probs=136.3

Q ss_pred             CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC----
Q 010784          112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD----  187 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----  187 (501)
                      .+..++|+++|.+.++....+.|..++.+++ .....+.........+++.+             +|+++++...+    
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~-~~~~~~~~~~~~p~gla~~~-------------dG~l~va~~~~~~~~  106 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK-EIKRPFVSHKANPAAIKIHK-------------DGRLFVCYLGDFKST  106 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECSSSSEEEEEECT-------------TSCEEEEECTTSSSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCC-eEEEEEeCCCCCeeEEEECC-------------CCCEEEEecCCCccc
Confidence            3578999999998888888888988888763 44444555556788999998             78888775432    


Q ss_pred             CceEEec-CCceeeeccCC---CCceEEEEeeecCCCCCCEEEEeeCC------CcEEEEeccCCCccccccceeeccCC
Q 010784          188 HSIRLWW-KGSCQRCFKGH---NGPVSTLSDKLLGDGSGKILASGGED------ATVRLWSLSSSGKRGQQALKATLYGH  257 (501)
Q Consensus       188 g~i~vwd-~~~~~~~~~~h---~~~v~~l~~s~~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~  257 (501)
                      +.+...+ .+..+..+..+   ......+++.    ++|++.++....      +.+..++.+...       +..+...
T Consensus       107 ~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d----~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-------~~~~~~~  175 (319)
T d2dg1a1         107 GGIFAATENGDNLQDIIEDLSTAYCIDDMVFD----SKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-------VTPIIQN  175 (319)
T ss_dssp             CEEEEECTTSCSCEEEECSSSSCCCEEEEEEC----TTSCEEEEECCCBTTBCCEEEEEECTTSCC-------EEEEEEE
T ss_pred             eeEEEEcCCCceeeeeccCCCcccCCcceeEE----eccceeecccccccccCcceeEEEecccce-------eEEEeec
Confidence            2233334 33333322222   2346677774    888876664321      234444443322       2222222


Q ss_pred             CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784          258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK  337 (501)
Q Consensus       258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  337 (501)
                      -...+.|+|+++...++++-+..+.|..|++...........                                    ..
T Consensus       176 ~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~------------------------------------~~  219 (319)
T d2dg1a1         176 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG------------------------------------AT  219 (319)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE------------------------------------EE
T ss_pred             cceeeeeeeccccceEEEecccCCceEEEEEcCCCceecccc------------------------------------ce
Confidence            233467899984444566667788999998764321100000                                    00


Q ss_pred             EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc------CcccCeEEEEecCC--eEEEE
Q 010784          338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD------GHVGSVTQLHMDPY--KIVTG  408 (501)
Q Consensus       338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~~--~~l~~  408 (501)
                      .............+++.++|++.++...++ |.++|. .++.+      .++.      ++...++++++.+.  .++++
T Consensus       220 ~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l------~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t  292 (319)
T d2dg1a1         220 IPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPI------GQILIPGRDEGHMLRSTHPQFIPGTNQLIIC  292 (319)
T ss_dssp             EEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEE------EEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred             eeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEE------EEEeCCCcCCCcCceeeeEEEeCCCCEEEEE
Confidence            001111123356799999999888877666 999995 45433      2222      34456789999887  55555


Q ss_pred             e
Q 010784          409 G  409 (501)
Q Consensus       409 g  409 (501)
                      .
T Consensus       293 ~  293 (319)
T d2dg1a1         293 S  293 (319)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.62  E-value=3.8e-05  Score=67.49  Aligned_cols=240  Identities=9%  Similarity=0.050  Sum_probs=133.0

Q ss_pred             ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCc-eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC-
Q 010784          155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS-CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED-  231 (501)
Q Consensus       155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~-~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d-  231 (501)
                      .+..++|.+             +|++.++-...+.|..|+ .+. ....+.........+++.    ++|+++++...+ 
T Consensus        41 ~lEG~~~D~-------------~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~----~dG~l~va~~~~~  103 (319)
T d2dg1a1          41 QLEGLNFDR-------------QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIH----KDGRLFVCYLGDF  103 (319)
T ss_dssp             CEEEEEECT-------------TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEEC----TTSCEEEEECTTS
T ss_pred             CcEeCEECC-------------CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEEC----CCCCEEEEecCCC
Confidence            346788887             788888888899999998 443 344444455667889986    788887765432 


Q ss_pred             ---CcEEEEeccCCCccccccceeecc--CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecC
Q 010784          232 ---ATVRLWSLSSSGKRGQQALKATLY--GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVP  306 (501)
Q Consensus       232 ---g~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~  306 (501)
                         +.+...+......      .....  .-......+.+.+ ++++.++..          .......          .
T Consensus       104 ~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~----------~~~~~~~----------~  156 (319)
T d2dg1a1         104 KSTGGIFAATENGDNL------QDIIEDLSTAYCIDDMVFDS-KGGFYFTDF----------RGYSTNP----------L  156 (319)
T ss_dssp             SSCCEEEEECTTSCSC------EEEECSSSSCCCEEEEEECT-TSCEEEEEC----------CCBTTBC----------C
T ss_pred             ccceeEEEEcCCCcee------eeeccCCCcccCCcceeEEe-ccceeeccc----------ccccccC----------c
Confidence               2344444443321      11111  1122355667765 555444422          1110000          0


Q ss_pred             CCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE-cCCc-EEEEecCCCCCCCCC--
Q 010784          307 GVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG-GIGK-AMTWDIRRSQDAVKP--  382 (501)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~--  382 (501)
                      +                  .+..++... +.+..+...-...+.++|+|+++.|..+ +..+ |..|++.........  
T Consensus       157 g------------------~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~  217 (319)
T d2dg1a1         157 G------------------GVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG  217 (319)
T ss_dssp             E------------------EEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE
T ss_pred             c------------------eeEEEeccc-ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecccc
Confidence            0                  011111111 1111111112345789999999865444 4455 999998754221000  


Q ss_pred             CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCC-CCCCCcceeeeEeeccccEEEEeec
Q 010784          383 QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNY-PEEADISTGCSAMAVSGCRIVTASY  458 (501)
Q Consensus       383 ~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~s~~~  458 (501)
                      ...............++++.+ ++.++....+.|.+||. +|+.+..+.... ..++...+++++|.+++..+++...
T Consensus       218 ~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         218 ATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             ceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            000000111123567999999 88888778999999995 688887774321 1234456789999998877766553

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=0.00074  Score=62.36  Aligned_cols=296  Identities=10%  Similarity=-0.024  Sum_probs=147.9

Q ss_pred             CCceEEeeCCcEEEeec---------CCeeeEEEEecccccccc--eecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784          112 PHDHILLDNNDIFSTQG---------SSIQNIKIDNFLSESYYR--ATLSDHKARITCMRLFPLHETSLFRSEPQRTENV  180 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g---------~~d~~i~vw~~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~  180 (501)
                      .+....++||+++++..         +..+.+.++|+.++ ...  .........+....|||             ||+.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~-~~~~l~~~~~~~~~l~~~~wSP-------------DG~~  127 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG-DPQSLDPPEVSNAKLQYAGWGP-------------KGQQ  127 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC-CCEECCCTTCCSCCCSBCCBCS-------------STTC
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC-ceeeccCccCCccccceeeecc-------------CCce
Confidence            46777899999988764         33577889998875 322  22223344566677888             8888


Q ss_pred             EEEeeCCCceEEec--CCceeeec-cCCCCc-----------------eEEEEeeecCCCCCCEEEEeeC-CCcEEEE--
Q 010784          181 LVTSSCDHSIRLWW--KGSCQRCF-KGHNGP-----------------VSTLSDKLLGDGSGKILASGGE-DATVRLW--  237 (501)
Q Consensus       181 l~s~~~dg~i~vwd--~~~~~~~~-~~h~~~-----------------v~~l~~s~~~~~~~~~l~sg~~-dg~i~iw--  237 (501)
                      +|-.. ++.|.+.+  .+..++.. .+..+.                 -..+-||    |+|++|+.... +..|..+  
T Consensus       128 iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS----PDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         128 LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS----PDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC----TTSSEEEEEEEECTTSCEEEE
T ss_pred             EEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC----CCCCeEEEEEecccccceeec
Confidence            88765 56677766  33222222 121111                 1467787    89999887643 2333333  


Q ss_pred             -------------------------------eccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-C---Ce
Q 010784          238 -------------------------------SLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-D---SK  282 (501)
Q Consensus       238 -------------------------------d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-d---g~  282 (501)
                                                     |+.++..................+..+.|.+ ++.+++.... +   ..
T Consensus       203 ~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~-d~~~~~~~~nR~q~~~~  281 (465)
T d1xfda1         203 PTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSI  281 (465)
T ss_dssp             CCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEE
T ss_pred             ccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcC-CCeEEEEEEccccccce
Confidence                                           3322211000000000111222356778886 5555544332 2   35


Q ss_pred             EEEEECCCCccccceecccce--ecCCCceeeecCCCeE-EEE-e--CC--cEEEEEcC------CCceEeeeccCCCcE
Q 010784          283 VRVWDTSTSSAVRSSCCVGMT--SVPGVPVDMKCHESML-YIA-S--GS--SVVTIDLR------TMQKVMTPAICKPIL  348 (501)
Q Consensus       283 v~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~-~--~~--~i~~~d~~------~~~~~~~~~~~~~~v  348 (501)
                      |.++|..+++...........  ........+..++... ++. +  ++  .+..+++.      .++.+..+....-.|
T Consensus       282 i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V  361 (465)
T d1xfda1         282 LTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV  361 (465)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred             EEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceE
Confidence            788899888653322111000  0001111122222222 221 1  22  34444332      222333343334456


Q ss_pred             EEE-EEcCCCcEE-EEEcCCc---EEEEec--CCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE-EecC--CCcEEE
Q 010784          349 HSF-SIMPSKSLI-CTGGIGK---AMTWDI--RRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT-GGRD--DLRINI  417 (501)
Q Consensus       349 ~~v-~~~~~~~~l-~~~~~d~---i~iwd~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~-~gs~--dg~i~i  417 (501)
                      ..+ .++.+++.+ +++..+.   -.+|.+  .....   .+++...........++.|||+ ++++ .++.  --.+.+
T Consensus       362 ~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~---~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~  438 (465)
T d1xfda1         362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN---RQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTV  438 (465)
T ss_dssp             EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC---CBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred             EEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc---ceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEE
Confidence            665 588876554 4554321   345544  33222   1222222233456778999999 5544 3322  235788


Q ss_pred             EeCCCcccccccc
Q 010784          418 WETDTGMLANSLL  430 (501)
Q Consensus       418 wd~~~~~~~~~~~  430 (501)
                      ++..+++.+..+.
T Consensus       439 ~~~~~~~~~~~Le  451 (465)
T d1xfda1         439 HNTTDKKKMFDLE  451 (465)
T ss_dssp             EETTTCCEEEEEE
T ss_pred             EECCCCCEEEEEc
Confidence            8888888887773

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.27  E-value=0.00094  Score=57.47  Aligned_cols=219  Identities=16%  Similarity=0.057  Sum_probs=129.1

Q ss_pred             CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784          220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC  299 (501)
Q Consensus       220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  299 (501)
                      .++.+..+--..+.|..||..++..       ..+. ....+.++++.+ ++.++++ +.+ .+.++|..+++.......
T Consensus        28 ~~~~l~wvDi~~~~I~r~d~~~g~~-------~~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          28 ASGTAWWFNILERELHELHLASGRK-------TVHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTTEE-------EEEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             CCCEEEEEECCCCEEEEEECCCCeE-------EEEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            3555666555678899999888652       2222 345677888875 6665554 554 588999998864321110


Q ss_pred             ccceecCCCceeeecCCCe-EEEEeC------CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE-cCCc-EEE
Q 010784          300 VGMTSVPGVPVDMKCHESM-LYIASG------SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG-GIGK-AMT  370 (501)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~-~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~d~-i~i  370 (501)
                       ........+..+..++++ +++++.      ..-.+|.+..++....... -...+.++|+++++.+..+ +..+ |..
T Consensus        97 -~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1          97 -ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             -STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             -ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeE
Confidence             000111123333444443 333321      2455666666655443332 3446789999998765544 4455 888


Q ss_pred             EecCCCCCC--CCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEee
Q 010784          371 WDIRRSQDA--VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMA  447 (501)
Q Consensus       371 wd~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s  447 (501)
                      +++......  .+......+.+..+....++++.+ .+.++.-..+.|..||. +|+.+..+..     ....+++++|-
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l-----P~~~~T~~~FG  248 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV-----PGKQTTCPAFI  248 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-----SCSBEEEEEEE
T ss_pred             eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC-----CCCceEEEEEe
Confidence            887543211  001111222333456788999998 88777667788999995 6888888842     23468999996


Q ss_pred             -ccccEEEEee
Q 010784          448 -VSGCRIVTAS  457 (501)
Q Consensus       448 -~~g~~l~s~~  457 (501)
                       +|.+.|+..+
T Consensus       249 G~d~~~LyvTt  259 (295)
T d2ghsa1         249 GPDASRLLVTS  259 (295)
T ss_dssp             STTSCEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence             6766665443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.01  E-value=0.0034  Score=53.84  Aligned_cols=225  Identities=7%  Similarity=-0.064  Sum_probs=132.6

Q ss_pred             ceEEeeC-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784          114 DHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL  192 (501)
Q Consensus       114 ~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v  192 (501)
                      ....|++ ++.+.-+--..+.|.-||.+++......   ....+.++++.+             +|+++++ +.+| +.+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~-------------dg~l~va-~~~g-l~~   82 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKIS-------------DSKQLIA-SDDG-LFL   82 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEE-------------TTEEEEE-ETTE-EEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE---CCCCcEEEEEec-------------CCCEEEE-EeCc-cEE
Confidence            4556774 5666656556788888998875322222   245688888887             6776665 4454 777


Q ss_pred             ec--CCceeeecc---C--CCCceEEEEeeecCCCCCCEEEEeeC----CCcEEEEeccCCCccccccceeeccCCCCce
Q 010784          193 WW--KGSCQRCFK---G--HNGPVSTLSDKLLGDGSGKILASGGE----DATVRLWSLSSSGKRGQQALKATLYGHEKPI  261 (501)
Q Consensus       193 wd--~~~~~~~~~---~--h~~~v~~l~~s~~~~~~~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  261 (501)
                      +|  +++. ..+.   .  ....++.+.+    +++|++.++...    .+.-.+|.+..+..      .... ..-..-
T Consensus        83 ~d~~tg~~-~~l~~~~~~~~~~~~nd~~v----d~~G~iw~~~~~~~~~~~~g~l~~~~~g~~------~~~~-~~~~~~  150 (295)
T d2ghsa1          83 RDTATGVL-TLHAELESDLPGNRSNDGRM----HPSGALWIGTMGRKAETGAGSIYHVAKGKV------TKLF-ADISIP  150 (295)
T ss_dssp             EETTTCCE-EEEECSSTTCTTEEEEEEEE----CTTSCEEEEEEETTCCTTCEEEEEEETTEE------EEEE-EEESSE
T ss_pred             eeccccee-eEEeeeecCCCcccceeeEE----CCCCCEEEEeccccccccceeEeeecCCcE------EEEe-eccCCc
Confidence            87  3432 2221   1  1224677776    488887766432    23445666655431      2222 222234


Q ss_pred             eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784          262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP  341 (501)
Q Consensus       262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  341 (501)
                      ..+.+++....++++-+..+.|..+++..........                                    .......
T Consensus       151 Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~------------------------------------~~~~~~~  194 (295)
T d2ghsa1         151 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK------------------------------------AEVFIDS  194 (295)
T ss_dssp             EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC------------------------------------CEEEEEC
T ss_pred             ceeeecCCCceEEEeecccceeeEeeecccccccccc------------------------------------eEEEecc
Confidence            6788987555566777778889988875432110000                                    0001112


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec-CC--eEEEEecC
Q 010784          342 AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD-PY--KIVTGGRD  411 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~--~~l~~gs~  411 (501)
                      .+..+....+++..+|++.++.-.++ |..||.. ++..      ..+.-....+++++|- ++  .++++...
T Consensus       195 ~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~------~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         195 TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHI------ARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEE------EEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEe------eEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            23345678899999999888776666 9999954 4433      5554444568999995 44  56665433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.98  E-value=0.00075  Score=57.43  Aligned_cols=222  Identities=9%  Similarity=0.010  Sum_probs=110.8

Q ss_pred             CCc--CcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CC-----cEEEEeccCCCcc
Q 010784          175 QRT--ENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DA-----TVRLWSLSSSGKR  245 (501)
Q Consensus       175 ~~~--~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg-----~i~iwd~~~~~~~  245 (501)
                      +|+  |+.++..+ +|.|.+.| .+...+.+..+.+.+...+||    |||+.|+-... ++     .|.+.+..++.. 
T Consensus         7 sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~S----PDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~-   80 (281)
T d1k32a2           7 NPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFF----PDGRKIAIRVMRGSSLNTADLYFYNGENGEI-   80 (281)
T ss_dssp             EEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEEC----TTSSEEEEEEEESTTCCEEEEEEEETTTTEE-
T ss_pred             CCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEEC----CCCCEEEEEEeeCCCCCceEEEEEEecCCce-
Confidence            347  88888765 56677778 555556677777888899997    89998885432 22     366667666542 


Q ss_pred             ccccceeeccC-------CCCceeEEEEeecCCeEEEEEeCC------CeEEEEECCCCccccceecccceecCCCceee
Q 010784          246 GQQALKATLYG-------HEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM  312 (501)
Q Consensus       246 ~~~~~~~~~~~-------~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  312 (501)
                            ..+..       .........|+| +++.++.....      ..+...+...+....        .........
T Consensus        81 ------~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  145 (281)
T d1k32a2          81 ------KRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGINFVP--------LNLGPATHI  145 (281)
T ss_dssp             ------EECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE--------CCSCSCSEE
T ss_pred             ------EEeeecCCCccCccccccccccCC-CCCEEEEEEccCCCccceeeeeecCCCceeEE--------ecCCcccee
Confidence                  22211       123345678887 56666654321      223444444332211        011111111


Q ss_pred             ecCCCeEEEEeCC--------------cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCC
Q 010784          313 KCHESMLYIASGS--------------SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRS  376 (501)
Q Consensus       313 ~~~~~~~~~~~~~--------------~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~  376 (501)
                      ...+....+....              ............... ...........++++..+......+.  |.++|+...
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~  224 (281)
T d1k32a2         146 LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGK  224 (281)
T ss_dssp             EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSC
T ss_pred             eecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeec-cCCccccceeeeeccccceecccccccceEEEeCCCC
Confidence            1222222222110              111222222222222 22233344455555543333333333  888888775


Q ss_pred             CCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccccc
Q 010784          377 QDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLAN  427 (501)
Q Consensus       377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~  427 (501)
                      +.       ..+..+. ......|+|+ +.|+- +.++.|+++|+.+++...
T Consensus       225 ~~-------~~lt~~~-~~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         225 DL-------RKHTSFT-DYYPRHLNTDGRRILF-SKGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             SC-------EECCCCC-SSCEEEEEESSSCEEE-EETTEEEEECTTTCCEEE
T ss_pred             ce-------EEeecCC-CcccccCcCCCCEEEE-EeCCEEEEEECCCCCEEE
Confidence            43       2222221 1222357888 44443 256889999998876543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.96  E-value=0.00036  Score=59.57  Aligned_cols=224  Identities=7%  Similarity=-0.001  Sum_probs=114.3

Q ss_pred             EeeCC--cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CC-----
Q 010784          117 LLDNN--DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DH-----  188 (501)
Q Consensus       117 ~~~~~--~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg-----  188 (501)
                      .++|+  |..+|-.+. +.+.+.|+.++ + .+.|..+.+.+...+|||             ||+.||.... ++     
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g-~-~~~Lt~~~~~~~~p~~SP-------------DG~~iaf~~~~~~~~~~~   68 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSG-S-TRKIVSNLGVINNARFFP-------------DGRKIAIRVMRGSSLNTA   68 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTC-C-EEEEECSSSEEEEEEECT-------------TSSEEEEEEEESTTCCEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCC-C-EEEEecCCCcccCEEECC-------------CCCEEEEEEeeCCCCCce
Confidence            45677  777764432 44667788764 3 456777888899999999             8888885532 22     


Q ss_pred             ceEEec-CCceeeeccCC-------CCceEEEEeeecCCCCCCEEEEeeCC------CcEEEEeccCCCccccccceeec
Q 010784          189 SIRLWW-KGSCQRCFKGH-------NGPVSTLSDKLLGDGSGKILASGGED------ATVRLWSLSSSGKRGQQALKATL  254 (501)
Q Consensus       189 ~i~vwd-~~~~~~~~~~h-------~~~v~~l~~s~~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~  254 (501)
                      .|.+.+ .+.....+..+       ........|+    ++|+.|+.....      ..+...+.....       ....
T Consensus        69 ~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~s----pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  137 (281)
T d1k32a2          69 DLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFD----PDGNLIISTDAMQPFSSMTCLYRVENDGIN-------FVPL  137 (281)
T ss_dssp             EEEEEETTTTEEEECCCCCEEEETTEECSEEEEEC----TTCCEEEEECTTSSSTTCCEEEEEEGGGTE-------EEEC
T ss_pred             EEEEEEecCCceEEeeecCCCccCccccccccccC----CCCCEEEEEEccCCCccceeeeeecCCCce-------eEEe
Confidence            245555 33333333222       2234567786    788888764322      223444444332       1111


Q ss_pred             cCCCCceeEEEEeecCCeEEEEEeCCCe-----------EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe
Q 010784          255 YGHEKPIKLMSVAGHKSFLLVTISKDSK-----------VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS  323 (501)
Q Consensus       255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~-----------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (501)
                        +....... +.+.+...++....+..           ..+.......      .................++..+...
T Consensus       138 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  208 (281)
T d1k32a2         138 --NLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA------FKKIVDMSTHVSSPVIVGHRIYFIT  208 (281)
T ss_dssp             --CSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE------EEEEECCSSCCEEEEEETTEEEEEE
T ss_pred             --cCCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccc------eeeccCCccccceeeeeccccceec
Confidence              22222222 33323333333222211           0111111000      0000011222223334445554444


Q ss_pred             C----CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCC
Q 010784          324 G----SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQD  378 (501)
Q Consensus       324 ~----~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~  378 (501)
                      .    ..|.++|+.+.+...........+  ..|+|||+.|+....+.|+++|+.+++.
T Consensus       209 ~~~~~~~l~~~d~~g~~~~~lt~~~~~~~--~~~SpDG~~I~f~~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         209 DIDGFGQIYSTDLDGKDLRKHTSFTDYYP--RHLNTDGRRILFSKGGSIYIFNPDTEKI  265 (281)
T ss_dssp             CTTSSCEEEEEETTSCSCEECCCCCSSCE--EEEEESSSCEEEEETTEEEEECTTTCCE
T ss_pred             ccccccceEEEeCCCCceEEeecCCCccc--ccCcCCCCEEEEEeCCEEEEEECCCCCE
Confidence            3    268888988776544322222233  4589999988876655599999988764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.45  E-value=0.02  Score=50.80  Aligned_cols=163  Identities=10%  Similarity=0.006  Sum_probs=85.8

Q ss_pred             CceEEeeCCcEEEeecCCe-----------eeEEEEeccccccc-cee-cccCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784          113 HDHILLDNNDIFSTQGSSI-----------QNIKIDNFLSESYY-RAT-LSDHKARITCMRLFPLHETSLFRSEPQRTEN  179 (501)
Q Consensus       113 i~~~~~~~~~~~~~~g~~d-----------~~i~vw~~~~~~~~-~~~-~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~  179 (501)
                      +...+...+|++++.|+..           ..+.+||..++.-. ... ...|.......++.+             ++.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-------------~g~   88 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-------------NGQ   88 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-------------TSC
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-------------CCc
Confidence            3444555678888877642           24778999875211 111 122333334556666             789


Q ss_pred             EEEEeeCC-CceEEec--CCce--eeeccCCCCceEEEEeeecCCCCCCEEEEeeCC------CcEEEEeccCCCccccc
Q 010784          180 VLVTSSCD-HSIRLWW--KGSC--QRCFKGHNGPVSTLSDKLLGDGSGKILASGGED------ATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       180 ~l~s~~~d-g~i~vwd--~~~~--~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~  248 (501)
                      +++.|+.+ ..+.+||  +..-  ..........- +.+..    .++++++.|+.+      ..+.+||..+..-....
T Consensus        89 i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~-~~~~~----~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3          89 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ-SSATM----SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC-EEEEC----TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             EEEeecCCCcceeEecCccCccccccccccccccc-ceeee----cCCceeeeccccccccccceeeeecCCCCceeecC
Confidence            99998765 5889998  2221  11111112222 23332    688898888753      36889998875320000


Q ss_pred             ---cceeeccCCCCce----eEEEEeecCCeEEEEEeCCCeEEEEECCCCcc
Q 010784          249 ---ALKATLYGHEKPI----KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSA  293 (501)
Q Consensus       249 ---~~~~~~~~~~~~v----~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~  293 (501)
                         ........+...+    ....+...++..++.++.++.+.+++..+...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         164 NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             TSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             CCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence               0000000011000    11122223566777777778888888776643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=0.041  Score=45.65  Aligned_cols=221  Identities=11%  Similarity=0.117  Sum_probs=141.0

Q ss_pred             CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784          231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV  310 (501)
Q Consensus       231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  310 (501)
                      ..+|.|-|+.....     ..+..-.-.    +.-.+| ..+.|+.-+ ...+.++|+++.+.+...      .....+.
T Consensus        44 ~~~VvIidl~n~~~-----~~Rrpi~Ad----sAIMhP-~~~IiALra-g~~LQiFnletK~klks~------~~~e~Vv  106 (327)
T d1utca2          44 QAQVVIIDMNDPSN-----PIRRPISAD----SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAH------TMTDDVT  106 (327)
T ss_dssp             EEEEEEEETTSTTS-----CEEEECCCS----EEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEE------ECSSCCC
T ss_pred             CceEEEEECCCCCc-----ceecccchh----hhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceE------EcCCCcE
Confidence            35788999987653     222222222    234566 556666655 568999999998654433      3333344


Q ss_pred             eeec-CCCeEEEEeCCcEEEEEcCCC-ceEeeeccC----CCcEEEEEEcCCCcEEEEEc----C---Cc-EEEEecCCC
Q 010784          311 DMKC-HESMLYIASGSSVVTIDLRTM-QKVMTPAIC----KPILHSFSIMPSKSLICTGG----I---GK-AMTWDIRRS  376 (501)
Q Consensus       311 ~~~~-~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~----~---d~-i~iwd~~~~  376 (501)
                      -..| +++.+.++++..++-|+++.. .+.+.+..|    ...|..-..++++++++..+    +   .| +.+|.....
T Consensus       107 fWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~  186 (327)
T d1utca2         107 FWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  186 (327)
T ss_dssp             EEEESSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred             EEEecCCCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC
Confidence            4444 567778888899999999543 355556555    45788888999998877654    2   23 888888764


Q ss_pred             CCCCCCCCcccccCcccCeEEEEecCC----eEEEEe---cCCCcEEEEeCCCccc-cccc-----c-cCCCCCCCccee
Q 010784          377 QDAVKPQPMAELDGHVGSVTQLHMDPY----KIVTGG---RDDLRINIWETDTGML-ANSL-----L-CNYPEEADISTG  442 (501)
Q Consensus       377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~~g---s~dg~i~iwd~~~~~~-~~~~-----~-~~~~~~~~~~v~  442 (501)
                      .       .+.++||......+.+..+    .+++-+   ...++++|-++.+... -..+     . ...+.....---
T Consensus       187 ~-------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPv  259 (327)
T d1utca2         187 V-------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  259 (327)
T ss_dssp             E-------EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEE
T ss_pred             c-------CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEE
Confidence            4       3778899877777765432    454443   2346899999876321 1111     0 011222234445


Q ss_pred             eeEeeccccEEEEeecCCCceEEEeeccCCcccee
Q 010784          443 CSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL  477 (501)
Q Consensus       443 ~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~  477 (501)
                      ++..|+....+..-+  .-|.|+++|+.++...+.
T Consensus       260 amqvs~kygiiyviT--K~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         260 AMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             EEEEETTTTEEEEEE--TTSEEEEEETTTCCEEEE
T ss_pred             EEEeeccCCEEEEEe--cCcEEEEEEcccccEEEE
Confidence            678888888888777  569999999999887554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.23  E-value=0.0054  Score=53.96  Aligned_cols=110  Identities=15%  Similarity=0.191  Sum_probs=72.3

Q ss_pred             EEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCC--CCCCccccc---CcccCeEEEEecCC-eEEEEecCCCcEEEEe
Q 010784          348 LHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAV--KPQPMAELD---GHVGSVTQLHMDPY-KIVTGGRDDLRINIWE  419 (501)
Q Consensus       348 v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~--~~~~~~~~~---~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd  419 (501)
                      ...+.++|||+++++++ -+. +.++|+++.....  +..+...+.   ...-....-+|+.. ...++---|..|.-|+
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEe
Confidence            45789999999999888 344 9999997532210  000111111   11223455678888 7777777899999999


Q ss_pred             CCCc----------ccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          420 TDTG----------MLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       420 ~~~~----------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      +...          ..+..+..|...+|.....+-...|||++|++..
T Consensus       357 ~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         357 IEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             HHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             cchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            8543          4455665666566665555567789999999976

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.064  Score=44.54  Aligned_cols=210  Identities=8%  Similarity=-0.034  Sum_probs=121.3

Q ss_pred             cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeec-cCCCCceEEEEeeecCCCCCCEEE
Q 010784          149 LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCF-KGHNGPVSTLSDKLLGDGSGKILA  226 (501)
Q Consensus       149 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~-~~h~~~v~~l~~s~~~~~~~~~l~  226 (501)
                      +..+...+.+|+|.+.            ++..+.+-..++.|+..+ .+.....+ ......+.++++.   -..+++.+
T Consensus        31 ~~~~~~~~~~ld~D~~------------~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD---~~~~~lY~   95 (263)
T d1npea_          31 LHIPAKVIIGLAFDCV------------DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALD---HLGRTIFW   95 (263)
T ss_dssp             EEEEEEEEEEEEEETT------------TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEE---TTTTEEEE
T ss_pred             cccCCCcEEEEEEEeC------------CCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEe---ccCCeEEE
Confidence            3444556788888872            344555555667787766 34333333 2233467788873   12344444


Q ss_pred             EeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCe--EEEEECCCCccccceeccccee
Q 010784          227 SGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSK--VRVWDTSTSSAVRSSCCVGMTS  304 (501)
Q Consensus       227 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~  304 (501)
                      +-...+.|.+.+++....      .......-.....+++.|..+.++.+-...+.  |.--++.....           
T Consensus        96 ~d~~~~~I~~~~~dg~~~------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-----------  158 (263)
T d1npea_          96 TDSQLDRIEVAKMDGTQR------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-----------  158 (263)
T ss_dssp             EETTTTEEEEEETTSCSC------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-----------
T ss_pred             eccCCCEEEEEecCCceE------EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-----------
Confidence            555677999999886542      22223333567889998866666655433222  33333332211           


Q ss_pred             cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCC
Q 010784          305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKP  382 (501)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~  382 (501)
                                                       .......-....++++.+.++.|.... ..+ |...|+......   
T Consensus       159 ---------------------------------~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~---  202 (263)
T d1npea_         159 ---------------------------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR---  202 (263)
T ss_dssp             ---------------------------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE---
T ss_pred             ---------------------------------eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE---
Confidence                                             001111234567889987766555443 444 888888754321   


Q ss_pred             CCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784          383 QPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL  430 (501)
Q Consensus       383 ~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~  430 (501)
                         ..+.+. ....+|++..+.++.+-...+.|...|..+++.+..+.
T Consensus       203 ---~v~~~~-~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         203 ---KVLEGL-QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             ---EEEECC-CSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             ---EEECCC-CCcEEEEEECCEEEEEECCCCEEEEEECCCCccceEEC
Confidence               122222 23467888866777776678899999999888877663

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.02  E-value=0.072  Score=49.91  Aligned_cols=49  Identities=10%  Similarity=-0.088  Sum_probs=33.8

Q ss_pred             eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc-EEEEe
Q 010784          404 KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC-RIVTA  456 (501)
Q Consensus       404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~  456 (501)
                      .++..|+.||.++.+|.++|+.+-++....    ...-.-+.|..||+ ||++.
T Consensus       476 glVf~G~~dg~l~A~Da~tGe~lW~~~l~~----~~~a~P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         476 GLVWYATLDGYLKALDNKDGKELWNFKMPS----GGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSS----CCCSCCEEEEETTEEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEECCC----CceecceEEEECCEEEEEEE
Confidence            355567899999999999999998885432    12222356677886 55443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.095  Score=43.52  Aligned_cols=240  Identities=9%  Similarity=-0.032  Sum_probs=133.8

Q ss_pred             CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-ecCCCce
Q 010784          232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGVPV  310 (501)
Q Consensus       232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~  310 (501)
                      ..|+-.++++...       ..+......+..+.|.+..+.++.+-...+.|.-.++............... ......+
T Consensus        10 ~~I~~~~l~~~~~-------~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~gl   82 (266)
T d1ijqa1          10 HEVRKMTLDRSEY-------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL   82 (266)
T ss_dssp             SSEEEEETTSCCC-------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             CeEEEEECCCCcc-------eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceE
Confidence            3588889987542       2223344567789998755656655556777877776543211111111100 1112234


Q ss_pred             eeecCCCeEEEEeCC--cEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEc-CCc-EEEEecCCCCCCCCCCCc
Q 010784          311 DMKCHESMLYIASGS--SVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGG-IGK-AMTWDIRRSQDAVKPQPM  385 (501)
Q Consensus       311 ~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~  385 (501)
                      ++.+....++.+...  .|.+.++..................++++|. |.++.+.. ... |.-.++.....       
T Consensus        83 AvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-------  155 (266)
T d1ijqa1          83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-------  155 (266)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-------
T ss_pred             EEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-------
Confidence            556667888887643  7999998876655555555667889999986 44444433 222 65566554321       


Q ss_pred             ccc-cCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc
Q 010784          386 AEL-DGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG  462 (501)
Q Consensus       386 ~~~-~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g  462 (501)
                      ..+ ...-...+.+++++.  ++..+-+..+.|...++........+..   ........++++.  +.+|..+.. .++
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~---~~~~~~p~~lav~--~~~ly~td~-~~~  229 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED---EKRLAHPFSLAVF--EDKVFWTDI-INE  229 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC---TTTTSSEEEEEEE--TTEEEEEET-TTT
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC---CCcccccEEEEEE--CCEEEEEEC-CCC
Confidence            222 222355788999976  6777767788999999865433222211   1111233455554  455655544 567


Q ss_pred             eEEEeeccCCccc--eeecC-CCCceeeeccc
Q 010784          463 LLQFRDFSNATCP--VLKHE-VQNDSKFWGPQ  491 (501)
Q Consensus       463 ~i~~w~~~~~~~~--~~s~~-~d~~~~~w~~~  491 (501)
                      .|...+..++...  +..+. .-..++++...
T Consensus       230 ~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~~  261 (266)
T d1ijqa1         230 AIFSANRLTGSDVNLLAENLLSPEDMVLFHNL  261 (266)
T ss_dssp             EEEEEETTTCCCCEEEECSCSCCCCEEEESGG
T ss_pred             eEEEEECCCCcceEEEEcCCCCceEEEEECCc
Confidence            8888776665543  22222 22346666543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.095  Score=43.44  Aligned_cols=216  Identities=12%  Similarity=0.008  Sum_probs=124.9

Q ss_pred             CCCceEEeeCCcE-EEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784          111 KPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS  189 (501)
Q Consensus       111 ~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  189 (501)
                      ..+..|+++.... ...+-...+.|...++..+ .....+..-...+.++++...            .+++.++-...+.
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~-~~~~v~~~~~~~p~~iAvD~~------------~~~lY~~d~~~~~  102 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG-EPTTIIRQDLGSPEGIALDHL------------GRTIFWTDSQLDR  102 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC-CCEEEECTTCCCEEEEEEETT------------TTEEEEEETTTTE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccC-CcEEEEEeccccccEEEEecc------------CCeEEEeccCCCE
Confidence            3467788885443 3344455677777777643 333333333456788888752            3455556666788


Q ss_pred             eEEec-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEE--eccCCCccccccceeeccCCCCceeEE
Q 010784          190 IRLWW-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLW--SLSSSGKRGQQALKATLYGHEKPIKLM  264 (501)
Q Consensus       190 i~vwd-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~l  264 (501)
                      |.+.+ .+.....+. ........+++.    |...+++-.. ..+..+|+  +++....      .......-.....|
T Consensus       103 I~~~~~dg~~~~~l~~~~l~~p~~l~vd----p~~g~ly~t~~~~~~~~I~r~~~dG~~~------~~i~~~~~~~P~gl  172 (263)
T d1npea_         103 IEVAKMDGTQRRVLFDTGLVNPRGIVTD----PVRGNLYWTDWNRDNPKIETSHMDGTNR------RILAQDNLGLPNGL  172 (263)
T ss_dssp             EEEEETTSCSCEEEECSSCSSEEEEEEE----TTTTEEEEEECCSSSCEEEEEETTSCCC------EEEECTTCSCEEEE
T ss_pred             EEEEecCCceEEEEecccccCCcEEEEe----cccCcEEEeecCCCCcEEEEecCCCCCc------eeeeeecccccceE
Confidence            98888 444333332 233567888885    5555555332 22333444  4544331      22222233455789


Q ss_pred             EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEeeec
Q 010784          265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMTPA  342 (501)
Q Consensus       265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~  342 (501)
                      ++.+.++.+.++-...+.|...|+........      ......+..++...+.++.+..  +.|...|..+++.+..+.
T Consensus       173 aiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v------~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV------LEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTEEEEEEE------EECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEeecCcEEEEEeCCCCEEEEEECCCCCeEEE------ECCCCCcEEEEEECCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            99875565556656778999999876532111      1222346677777888888854  478888888887766553


Q ss_pred             c-CCCcEEEEEEcC
Q 010784          343 I-CKPILHSFSIMP  355 (501)
Q Consensus       343 ~-~~~~v~~v~~~~  355 (501)
                      . .......+++.+
T Consensus       247 ~~~~~~~~gi~v~~  260 (263)
T d1npea_         247 PHKQTRLYGITIAL  260 (263)
T ss_dssp             CSSCCCCCCEEEEC
T ss_pred             CCCCCCcceEEEeC
Confidence            2 233444555544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.84  E-value=0.2  Score=47.04  Aligned_cols=150  Identities=11%  Similarity=0.051  Sum_probs=84.7

Q ss_pred             CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC---C-CceeE-EEEeecCCeEEEEEe------CCCeEEEEECC
Q 010784          221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH---E-KPIKL-MSVAGHKSFLLVTIS------KDSKVRVWDTS  289 (501)
Q Consensus       221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~-~~v~~-l~~~~~~~~~l~s~s------~dg~v~vwd~~  289 (501)
                      .+..++.++.|+.|.-.|.++++.      +..+...   . ..++. -.+.  ++ .++.+.      ..|.|+-+|.+
T Consensus       120 ~~~~v~~~t~dg~l~Alda~tG~~------~w~~~~~d~~~~~~~t~~P~v~--~~-~vivg~~~~e~~~~G~v~A~Da~  190 (596)
T d1w6sa_         120 TPALILKTQLDGNVAALNAETGET------VWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVK  190 (596)
T ss_dssp             SCCEEEEECTTSEEEEEETTTCCE------EEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETT
T ss_pred             CceEEEEEeCCCCeEeeccccCce------eccccccccccccccccCCcEE--CC-eEEEeeccccccccCceEEEECC
Confidence            345788889999999999999874      2222111   0 11111 1121  33 344443      24899999999


Q ss_pred             CCccccceecccce-----------------------------------ecCCCceeeecCCCeEEEEeCC---------
Q 010784          290 TSSAVRSSCCVGMT-----------------------------------SVPGVPVDMKCHESMLYIASGS---------  325 (501)
Q Consensus       290 ~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~---------  325 (501)
                      +++.+-........                                   ...-...++....+.+++.++.         
T Consensus       191 TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r  270 (596)
T d1w6sa_         191 TGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR  270 (596)
T ss_dssp             TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred             CCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccc
Confidence            99876543322100                                   0000122334445566666542         


Q ss_pred             --------cEEEEEcCCCceEeeeccCC---------CcEEEEE-EcCCC---cEEEEEcCCc-EEEEecCCCCCC
Q 010784          326 --------SVVTIDLRTMQKVMTPAICK---------PILHSFS-IMPSK---SLICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       326 --------~i~~~d~~~~~~~~~~~~~~---------~~v~~v~-~~~~~---~~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                              .+.-.|+++++.+..++...         ....-+. ...+|   ..++....++ +.++|..+++.+
T Consensus       271 ~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i  346 (596)
T d1w6sa_         271 PGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (596)
T ss_dssp             CSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCcee
Confidence                    47789999999987665421         1111121 12233   3566677777 999999887654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.54  E-value=0.28  Score=45.67  Aligned_cols=54  Identities=7%  Similarity=0.087  Sum_probs=36.7

Q ss_pred             CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          413 LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       413 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      |.|.-||+.+++.+-......      ...+-.++..|.++++|+  .||.++.+|..+++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~------~~~gg~l~TagglVF~G~--~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT------HWNGGTLSTAGNLVFQGT--AAGQMHAYSADKGEA  491 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS------SCCCCEEEETTTEEEEEC--TTSEEEEEETTTCCE
T ss_pred             cceEEEeCCCCeEeeeccCCC------CCCCceeEECCCEEEEEC--CCCcEEEEECCCCcE
Confidence            567888888888877664322      222223455677888887  669999998777664

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.18  Score=41.73  Aligned_cols=226  Identities=11%  Similarity=-0.052  Sum_probs=128.4

Q ss_pred             ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe-eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784          189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG-GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV  266 (501)
Q Consensus       189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~  266 (501)
                      .|+-.+ .+.....+......+..+.|.    ...+.|+-. ...+.|.-.+++......  ............+..|++
T Consensus        11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d----~~~~~lYw~D~~~~~I~~~~l~~~~~~~--~~~~~~~~~~~~p~glAv   84 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIPNLRNVVALDTE----VASNRIYWSDLSQRMICSTQLDRAHGVS--SYDTVISRDIQAPDGLAV   84 (266)
T ss_dssp             SEEEEETTSCCCEEEECSCSSEEEEEEE----TTTTEEEEEETTTTEEEEEEC----------CEEEECSSCSCCCEEEE
T ss_pred             eEEEEECCCCcceeeeCCCCceEEEEEE----eCCCEEEEEECCCCEEEEEEecCCCCCc--ceEEEEeCCCCCcceEEE
Confidence            476666 333333333345567788885    555555544 355667766665432100  011222233345667888


Q ss_pred             eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC--CCeEEEEeCC---cEEEEEcCCCceEeee
Q 010784          267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH--ESMLYIASGS---SVVTIDLRTMQKVMTP  341 (501)
Q Consensus       267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~i~~~d~~~~~~~~~~  341 (501)
                      .+..+++.++-...+.|.+.++.........     ......+..+..+  ...++.+..+   .|...++.........
T Consensus        85 D~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~-----~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~  159 (266)
T d1ijqa1          85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  159 (266)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEE-----ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             eeccceEEEEecCCCEEEeEecCCceEEEEE-----cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence            8767777777778889999998865432111     1112334444443  3455555432   4666666544433333


Q ss_pred             ccCCCcEEEEEEcCCCcEEEEE-cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEe
Q 010784          342 AICKPILHSFSIMPSKSLICTG-GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWE  419 (501)
Q Consensus       342 ~~~~~~v~~v~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd  419 (501)
                      ...-....++++.+.+..|..+ .... |...++......    .+...........+|++..+.++.+-..++.|...+
T Consensus       160 ~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~----~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK----TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----EEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE----EEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEE
Confidence            3334567899999876655554 4444 888888654321    112222223346788888777777766788898888


Q ss_pred             CCCccccccc
Q 010784          420 TDTGMLANSL  429 (501)
Q Consensus       420 ~~~~~~~~~~  429 (501)
                      ..+++....+
T Consensus       236 ~~~g~~~~~~  245 (266)
T d1ijqa1         236 RLTGSDVNLL  245 (266)
T ss_dssp             TTTCCCCEEE
T ss_pred             CCCCcceEEE
Confidence            8888766655

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.44  E-value=0.26  Score=46.02  Aligned_cols=53  Identities=13%  Similarity=0.113  Sum_probs=34.2

Q ss_pred             cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784          414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC  474 (501)
Q Consensus       414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~  474 (501)
                      .+.-||+.+|+.+-+.....      +...-..+..|.++++|+  .||.++.+|..+++.
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~------p~~gg~lstagglVF~G~--~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVS------PWNGGTLTTAGNVVFQGT--ADGRLVAYHAATGEK  510 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESS------SCCCCEEEETTTEEEEEC--TTSEEEEEETTTCCE
T ss_pred             cEEEeCCCCCceEeeecCCC------CCCCceEEEcCCEEEEEC--CCCeEEEEECCCCcE
Confidence            56667777777766553221      111223445778888887  569999999777664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.41  E-value=0.39  Score=44.95  Aligned_cols=49  Identities=16%  Similarity=0.034  Sum_probs=33.6

Q ss_pred             eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc-EEEEe
Q 010784          404 KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC-RIVTA  456 (501)
Q Consensus       404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~  456 (501)
                      .++..|+.||.++.+|.++|+.+-++....    ...-.=+.|..||+ ||+..
T Consensus       485 glVF~G~~Dg~l~A~Da~TGe~LW~~~~~~----~~~a~P~tY~~dGkQYvav~  534 (596)
T d1w6sa_         485 DLVFYGTLDGYLKARDSDTGDLLWKFKIPS----GAIGYPMTYTHKGTQYVAIY  534 (596)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSS----CCCSCCEEEEETTEEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEECCC----CcccCCeEEEECCEEEEEEE
Confidence            455568899999999999999998885432    11122255667886 55543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.37  E-value=0.21  Score=41.35  Aligned_cols=254  Identities=10%  Similarity=0.066  Sum_probs=133.2

Q ss_pred             CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCC
Q 010784          129 SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHN  206 (501)
Q Consensus       129 ~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~  206 (501)
                      +....+.|-|+..+....+.-..-.    +.-.+|             ..+.||.-+ ..++.++|  +...++.+.- .
T Consensus        42 ~~~~~VvIidl~n~~~~~Rrpi~Ad----sAIMhP-------------~~~IiALra-g~~LQiFnletK~klks~~~-~  102 (327)
T d1utca2          42 GEQAQVVIIDMNDPSNPIRRPISAD----SAIMNP-------------ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-T  102 (327)
T ss_dssp             TTEEEEEEEETTSTTSCEEEECCCS----EEEECS-------------SSSEEEEEE-TTEEEEEETTTTEEEEEEEC-S
T ss_pred             CCCceEEEEECCCCCcceecccchh----hhhcCC-------------CCcEEEEec-CCeEEEEehhHhhhhceEEc-C
Confidence            3456788888876544443322222    222346             567776665 56899999  5556666553 4


Q ss_pred             CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC----CceeEEEEeecCCeEEEEEe---C
Q 010784          207 GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE----KPIKLMSVAGHKSFLLVTIS---K  279 (501)
Q Consensus       207 ~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~v~~l~~~~~~~~~l~s~s---~  279 (501)
                      .+|.--.|.     +.+.|+-... ..|.-|+++....     +...+..|.    ..|..-..++ +.+.++..+   .
T Consensus       103 e~VvfWkWi-----s~~~L~lVT~-taVYHW~~~g~s~-----P~k~fdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~  170 (327)
T d1utca2         103 DDVTFWKWI-----SLNTVALVTD-NAVYHWSMEGESQ-----PVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQ  170 (327)
T ss_dssp             SCCCEEEES-----SSSEEEEECS-SEEEEEESSSSCC-----CEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEE
T ss_pred             CCcEEEEec-----CCCEEEEEcC-CceEEEcccCCCC-----chhhhhhcccccCceEEEEEECC-CCCEEEEEeEecC
Confidence            467777784     4556665543 5799999965443     344444443    3455555554 344443322   1


Q ss_pred             ----CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC
Q 010784          280 ----DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP  355 (501)
Q Consensus       280 ----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~  355 (501)
                          .|.+.+|..+.+.                                             -+.+.+|......+.+.-
T Consensus       171 ~~~i~G~mQLYS~er~~---------------------------------------------sQ~ieGhaa~F~~~~~~g  205 (327)
T d1utca2         171 QNRVVGAMQLYSVDRKV---------------------------------------------SQPIEGHAASFAQFKMEG  205 (327)
T ss_dssp             TTEEEEEEEEEETTTTE---------------------------------------------EEEECCSEEEEEEECCTT
T ss_pred             CCceeEEEEEEEeccCc---------------------------------------------CccccceeeeeEEEEcCC
Confidence                2445556554432                                             122333333222222211


Q ss_pred             C---CcEEEEE---cCCc-EEEEecCCCCC---CCCCCCccccc---CcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784          356 S---KSLICTG---GIGK-AMTWDIRRSQD---AVKPQPMAELD---GHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD  421 (501)
Q Consensus       356 ~---~~~l~~~---~~d~-i~iwd~~~~~~---~~~~~~~~~~~---~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~  421 (501)
                      +   ..+++-+   ..++ ++|.++.....   .+..+.+..+-   .-.+-.-++..++. .++..-+.-|.|++||++
T Consensus       206 ~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDle  285 (327)
T d1utca2         206 NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE  285 (327)
T ss_dssp             CSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             CCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcc
Confidence            1   1122222   2334 88888876422   11111111111   11344567888888 666555699999999999


Q ss_pred             CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEE
Q 010784          422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQ  465 (501)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~  465 (501)
                      ++.++..-+.     ....|...+-..+..-+++..  .+|.|.
T Consensus       286 Tgt~i~~nRI-----s~~~iF~~a~~~~~~Gi~~VN--r~GqVl  322 (327)
T d1utca2         286 TGTCIYMNRI-----SGETIFVTAPHEATAGIIGVN--RKGQVL  322 (327)
T ss_dssp             TCCEEEEEEC-----CSSCEEEEEEETTTTEEEEEE--TTSEEE
T ss_pred             cccEEEEeec-----CCCceEEeccCCCCceEEEEC--CCCeEE
Confidence            9998876631     233444444444433333333  445554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.10  E-value=0.55  Score=43.65  Aligned_cols=150  Identities=11%  Similarity=-0.010  Sum_probs=81.1

Q ss_pred             CEEEEeeCCCcEEEEeccCCCccccccceeeccC----CCCceeEEEEeecCCeEEEEEe-----CCCeEEEEECCCCcc
Q 010784          223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYG----HEKPIKLMSVAGHKSFLLVTIS-----KDSKVRVWDTSTSSA  293 (501)
Q Consensus       223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~l~s~s-----~dg~v~vwd~~~~~~  293 (501)
                      ..++.++.||.+...|.++++.      ......    ....++.--... ++..++.++     .+|.|+-+|+++++.
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~------~w~~~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~  188 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKI------NWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCE------EEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             CeEEEEeCCCcEEeeehhhhhh------hccccccccccccceeecCeEe-CCeEEEeeccccccccCcEEEEECCCCcE
Confidence            4677778899999999999874      221111    011111111111 343443332     368899999999987


Q ss_pred             ccceecccce--------------------------------ecCC---CceeeecCCCeEEEEeC--------------
Q 010784          294 VRSSCCVGMT--------------------------------SVPG---VPVDMKCHESMLYIASG--------------  324 (501)
Q Consensus       294 ~~~~~~~~~~--------------------------------~~~~---~~~~~~~~~~~~~~~~~--------------  324 (501)
                      +-........                                ...+   ....+....+..++.++              
T Consensus       189 ~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n  268 (571)
T d2ad6a1         189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN  268 (571)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccc
Confidence            6543221100                                0001   11233344445555544              


Q ss_pred             ---CcEEEEEcCCCceEeeeccCCC---------cEEEEEEcCCCc---EEEEEcCCc-EEEEecCCCCCC
Q 010784          325 ---SSVVTIDLRTMQKVMTPAICKP---------ILHSFSIMPSKS---LICTGGIGK-AMTWDIRRSQDA  379 (501)
Q Consensus       325 ---~~i~~~d~~~~~~~~~~~~~~~---------~v~~v~~~~~~~---~l~~~~~d~-i~iwd~~~~~~~  379 (501)
                         ..+...|.++++.+..++....         ......+..+++   .++.++.++ +.++|..+++.+
T Consensus       269 ~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i  339 (571)
T d2ad6a1         269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEe
Confidence               2477889999999877764321         111112222443   456666777 999998887643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.02  E-value=0.43  Score=41.70  Aligned_cols=107  Identities=18%  Similarity=0.179  Sum_probs=61.6

Q ss_pred             cCcEEEEeeCCC-----------ceEEec--CCcee--eec-cCCCCceEEEEeeecCCCCCCEEEEeeCC-CcEEEEec
Q 010784          177 TENVLVTSSCDH-----------SIRLWW--KGSCQ--RCF-KGHNGPVSTLSDKLLGDGSGKILASGGED-ATVRLWSL  239 (501)
Q Consensus       177 ~~~~l~s~~~dg-----------~i~vwd--~~~~~--~~~-~~h~~~v~~l~~s~~~~~~~~~l~sg~~d-g~i~iwd~  239 (501)
                      +|+.++.|+.+.           .+.+||  +++-.  ... ..|.......++.    .++.+++.|+.+ ..+.+||.
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~----~~g~i~v~Gg~~~~~~~~yd~  105 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD----GNGQIVVTGGNDAKKTSLYDS  105 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC----TTSCEEEECSSSTTCEEEEEG
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEe----cCCcEEEeecCCCcceeEecC
Confidence            688888887531           266898  33221  111 1232223344553    789999988765 58999999


Q ss_pred             cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEECCCCcc
Q 010784          240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDTSTSSA  293 (501)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~  293 (501)
                      .+..-    .....+...... ...+..+ ++.+++.|+.+      ..+.+||..+.+.
T Consensus       106 ~~~~w----~~~~~~~~~r~~-~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         106 SSDSW----IPGPDMQVARGY-QSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             GGTEE----EECCCCSSCCSS-CEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ccCcc----cccccccccccc-cceeeec-CCceeeeccccccccccceeeeecCCCCce
Confidence            87642    112222222222 2334443 67788887643      3589999988753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.94  E-value=0.66  Score=43.16  Aligned_cols=50  Identities=20%  Similarity=0.152  Sum_probs=33.8

Q ss_pred             eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc-EEEEee
Q 010784          404 KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC-RIVTAS  457 (501)
Q Consensus       404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~  457 (501)
                      .++.+|+.||.++.+|.++|+.+-++..... ....+   +.|..+|+ ||+..+
T Consensus       489 glVF~G~~dg~l~A~Da~TGe~LW~~~~~~~-~~~~P---~ty~~~GkQYv~v~~  539 (573)
T d1kb0a2         489 NVVFQGTADGRLVAYHAATGEKLWEAPTGTG-VVAAP---STYMVDGRQYVSVAV  539 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCC---EEEEETTEEEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEeEEEECCCC-ccccC---EEEEECCEEEEEEEe
Confidence            4555678999999999999999988864321 11222   55667886 554443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.67  E-value=0.55  Score=40.24  Aligned_cols=209  Identities=7%  Similarity=0.126  Sum_probs=117.7

Q ss_pred             CcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeee--cCCCCCCEEEEee-C-C--CcEEEEeccCCCccccc
Q 010784          176 RTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKL--LGDGSGKILASGG-E-D--ATVRLWSLSSSGKRGQQ  248 (501)
Q Consensus       176 ~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~--~~~~~~~~l~sg~-~-d--g~i~iwd~~~~~~~~~~  248 (501)
                      |+..+++...+.+-|.+|| .|+.+..+.  .+.++.+....  .-......++.++ . +  -+|.+|.+.....    
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~----  111 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG----  111 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT----
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc----
Confidence            4667888888887899999 888887765  35666655420  0011222344444 2 2  2578888864332    


Q ss_pred             cceeeccC-------CCCceeEEEE--eecCCe-EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784          249 ALKATLYG-------HEKPIKLMSV--AGHKSF-LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM  318 (501)
Q Consensus       249 ~~~~~~~~-------~~~~v~~l~~--~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (501)
                       .+..+..       -...+..+++  ++.++. +++....+|.+..|.+........                      
T Consensus       112 -~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v----------------------  168 (353)
T d1h6la_         112 -TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYI----------------------  168 (353)
T ss_dssp             -EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSE----------------------
T ss_pred             -ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCce----------------------
Confidence             1222221       1124666776  443443 566677789888887643211000                      


Q ss_pred             EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc--CcccCe
Q 010784          319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD--GHVGSV  395 (501)
Q Consensus       319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--~h~~~v  395 (501)
                                     +.+.++.+.. ...+..+.+......|..+-++. |..++....... ....+....  .....+
T Consensus       169 ---------------~~~lvr~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~-~~~~i~~~~g~~l~~D~  231 (353)
T d1h6la_         169 ---------------SGKKVRAFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGS-NGTVIDRADGRHLTPDI  231 (353)
T ss_dssp             ---------------EEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCS-CCEEEEECSSSSCCSCE
T ss_pred             ---------------eeEeeeccCC-CCccceEEEeCCCCcEEEecCccceEEEEeccCCCc-cceeeecccCccccCCc
Confidence                           0012233332 45688899998888888887766 777766532211 011111111  124456


Q ss_pred             EEEEec---C-C-eEEEEecCCCcEEEEeCCC-cccccccc
Q 010784          396 TQLHMD---P-Y-KIVTGGRDDLRINIWETDT-GMLANSLL  430 (501)
Q Consensus       396 ~~l~~~---~-~-~~l~~gs~dg~i~iwd~~~-~~~~~~~~  430 (501)
                      -.|++-   . . .++++.-.+++..+||..+ .+.+..|.
T Consensus       232 EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         232 EGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             cccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            666542   2 3 6777777789999999876 35665653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.33  E-value=2  Score=39.78  Aligned_cols=49  Identities=12%  Similarity=0.081  Sum_probs=34.3

Q ss_pred             eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc-EEEEe
Q 010784          404 KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC-RIVTA  456 (501)
Q Consensus       404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~  456 (501)
                      .++.+|+.||.++.+|.++|+.+-++.....    ..-.-+.|..+|+ ||+..
T Consensus       498 glVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~----~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         498 NLVFTGTGDGYFKAFDAKSGKELWKFQTGSG----IVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSC----CCSCCEEEEETTEEEEEEE
T ss_pred             CeEEEeCCCCeEEEEECCCCcEeEEEECCCC----ccccCEEEEECCEEEEEEE
Confidence            4555678999999999999999988864321    1122256778885 55543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.75  E-value=2.1  Score=37.85  Aligned_cols=241  Identities=11%  Similarity=0.088  Sum_probs=117.6

Q ss_pred             ceEEeeCCcEEEe-----ecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC-
Q 010784          114 DHILLDNNDIFST-----QGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-  187 (501)
Q Consensus       114 ~~~~~~~~~~~~~-----~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-  187 (501)
                      ...+++|+++++|     .|+....+++.|+.++...-..+..  .....++|.+             ++..|+....+ 
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~-------------D~~~~~Y~~~~~  192 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTH-------------DGKGMFYNAYPQ  192 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECT-------------TSSEEEEEECCC
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcC-------------CCCEEEEEEecc
Confidence            3457889999988     3445688999999987333333321  1125678888             66766544322 


Q ss_pred             ---------------CceEEecCCc----eeeeccCCC--CceEEEEeeecCCCCCCEEEEee---CCCcEEEE--eccC
Q 010784          188 ---------------HSIRLWWKGS----CQRCFKGHN--GPVSTLSDKLLGDGSGKILASGG---EDATVRLW--SLSS  241 (501)
Q Consensus       188 ---------------g~i~vwd~~~----~~~~~~~h~--~~v~~l~~s~~~~~~~~~l~sg~---~dg~i~iw--d~~~  241 (501)
                                     ..|..+..+.    ....+....  ..+..+..+    .++++++...   .++...+|  ++..
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s----~d~~~l~i~~~~~~~~~~~~~~~d~~~  268 (430)
T d1qfma1         193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS----DDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (430)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC----TTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             ccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeecc----CCcceeeEEeeccCCccEEEEEeeCCC
Confidence                           1344454221    122233222  334555554    7788876432   23344454  4443


Q ss_pred             CCcc--ccccceeeccCCCCceeEEEEeecCCeEEEEEe---CCCeEEEEECCCCccccceecccceecCCCc--eeeec
Q 010784          242 SGKR--GQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS---KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP--VDMKC  314 (501)
Q Consensus       242 ~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~  314 (501)
                      ....  ..................+..  .++.+++...   .++.|...++.......-...+.  ......  ..+..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~--~~~~~~~~~~~~~  344 (430)
T d1qfma1         269 ESNGITGILKWVKLIDNFEGEYDYVTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP--EHEKDVLEWVACV  344 (430)
T ss_dssp             SSSSSCSSCCCEEEECSSSSCEEEEEE--ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEEC--CCSSCEEEEEEEE
T ss_pred             cccccccccceeEeecccccceEEEec--CCceeecccCcccccceeEEecCCCCccccceEEec--ccCcceeeeEEEE
Confidence            2210  000011222222223332222  1344444333   34667777776543211001000  111112  12334


Q ss_pred             CCCeEEEEe--CC--cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc-EEEE-EcC---CcEEEEecCCCC
Q 010784          315 HESMLYIAS--GS--SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS-LICT-GGI---GKAMTWDIRRSQ  377 (501)
Q Consensus       315 ~~~~~~~~~--~~--~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~-~~~---d~i~iwd~~~~~  377 (501)
                      ..+.+++..  ++  .|.++++.++..........+.+..+...++.. +.++ .+-   ..+.-+|+.+++
T Consensus       345 ~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            445554442  22  789999988877655555556666665555543 3332 332   227778888765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.72  E-value=2.6  Score=38.79  Aligned_cols=191  Identities=12%  Similarity=0.039  Sum_probs=102.9

Q ss_pred             EEEEeeCCCcEEEEeccCCCccccccceeeccCC----------CCce-eEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784          224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGH----------EKPI-KLMSVAGHKSFLLVTISKDSKVRVWDTSTSS  292 (501)
Q Consensus       224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----------~~~v-~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~  292 (501)
                      .|+.++.++.|.-.|..+++.      +-.+...          ...+ ..+...   +..++.+..|+.|.-.|..+++
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~------lW~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~g~l~Alda~tG~  138 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKE------LWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGK  138 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCE------EEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCC
T ss_pred             EEEEECCCCeEEEEeCCCCCE------EEEECCCCCccccccccccccccCccee---CCeEEEEeCCCEEEEEECCCCc
Confidence            556667778888888888764      2221110          0011 122222   3367788899999999999998


Q ss_pred             cccceecccceecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCceEeeeccCC--------------------
Q 010784          293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQKVMTPAICK--------------------  345 (501)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~--------------------  345 (501)
                      .+......................+.+++...       +.|.-+|.++++.+..+..-.                    
T Consensus       139 ~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~  218 (560)
T d1kv9a2         139 AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ  218 (560)
T ss_dssp             EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred             EEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccc
Confidence            76543321111000000111112233333221       359999999999987664210                    


Q ss_pred             ----------CcE-EEEEEcCCCcEEEEEcC--------------------CcEEEEecCCCCCCCCCCCcccccC--cc
Q 010784          346 ----------PIL-HSFSIMPSKSLICTGGI--------------------GKAMTWDIRRSQDAVKPQPMAELDG--HV  392 (501)
Q Consensus       346 ----------~~v-~~v~~~~~~~~l~~~~~--------------------d~i~iwd~~~~~~~~~~~~~~~~~~--h~  392 (501)
                                ..+ ..+++.+...++..+..                    +.|.-.|+++++..      -.++.  |.
T Consensus       219 ~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~------W~~Q~~~~D  292 (560)
T d1kv9a2         219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA------WHYQVTPGD  292 (560)
T ss_dssp             SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE------EEEESSTTC
T ss_pred             ccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCcccee------EEEeccccc
Confidence                      111 12455666555554321                    12666677776543      11111  11


Q ss_pred             ---------cCeEEEEecCC--eEEEEecCCCcEEEEeCCCccccccc
Q 010784          393 ---------GSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSL  429 (501)
Q Consensus       393 ---------~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~  429 (501)
                               .....+.....  .+++.++.+|.+.++|..+|+++...
T Consensus       293 ~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~  340 (560)
T d1kv9a2         293 SWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (560)
T ss_dssp             CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             cccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccc
Confidence                     11223333333  67777889999999999999877543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.71  E-value=2  Score=37.46  Aligned_cols=188  Identities=7%  Similarity=0.013  Sum_probs=102.5

Q ss_pred             CCeEEEEEe-CCCeEEEEECCCCccccceecccceecCCCce--eeecCCCeEEEEeC---------------------C
Q 010784          270 KSFLLVTIS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV--DMKCHESMLYIASG---------------------S  325 (501)
Q Consensus       270 ~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------------------~  325 (501)
                      ++++++... .+.+|.+.|+++.+.........    ...+-  .....++..++.+.                     +
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn----~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN----AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS----CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCC----CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence            355555554 68899999999886533222111    11111  11222333333321                     1


Q ss_pred             cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC----------------cEEEEec----------------
Q 010784          326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG----------------KAMTWDI----------------  373 (501)
Q Consensus       326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----------------~i~iwd~----------------  373 (501)
                      .+..+|..+++....... .+....+.++++|+++++.+.+                .+.+++.                
T Consensus       174 ~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            356789888887766554 3456678999999998887621                1333333                


Q ss_pred             -------CCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccc--------cccccCCCCC
Q 010784          374 -------RRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLA--------NSLLCNYPEE  436 (501)
Q Consensus       374 -------~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~--------~~~~~~~~~~  436 (501)
                             +....   ...+..+.. ......+.++|+  .++++|..+.++.|+|++.-..+        ..+. ..+. 
T Consensus       253 gV~VVD~~~~~~---~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~-~e~e-  326 (459)
T d1fwxa2         253 GVKVVDGRKEAS---SLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV-AEPE-  326 (459)
T ss_dssp             TEEEEECSGG-----CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE-ECCB-
T ss_pred             CceeecccccCC---cceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE-eecc-
Confidence                   22100   001111111 223456789999  77777888999999999642211        1111 1111 


Q ss_pred             CCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784          437 ADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS  470 (501)
Q Consensus       437 ~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~  470 (501)
                      ..-.-.-.+|...|.-..+--  -|..|.-|++.
T Consensus       327 lglgPLht~fd~~g~aytslf--ids~v~kw~~~  358 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLF--LDSQVVKWNIE  358 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEET--TTTEEEEEEHH
T ss_pred             cCcCccccccCCCceEEEEee--ccceEEEEecc
Confidence            122233457888775444443  56899999964

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.76  E-value=2.5  Score=35.91  Aligned_cols=158  Identities=8%  Similarity=0.037  Sum_probs=81.4

Q ss_pred             CCceEEeeCCcEEEeecCC------------eeeEEEEecccccccceecccCCcc-------eeEEEeeccCcCccccc
Q 010784          112 PHDHILLDNNDIFSTQGSS------------IQNIKIDNFLSESYYRATLSDHKAR-------ITCMRLFPLHETSLFRS  172 (501)
Q Consensus       112 ~i~~~~~~~~~~~~~~g~~------------d~~i~vw~~~~~~~~~~~~~~h~~~-------V~~~~~~~~~~~~~~~~  172 (501)
                      ....|++.++|..+++.+.            .|.+.++|+.+.......+.-..+.       -..+.....        
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~--------  107 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID--------  107 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEEC--------
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEc--------
Confidence            4677999999988876542            3788888876542222222211111       122222210        


Q ss_pred             CCCCcCc-EEEEe---eCCCceEEec---CCcee---eeccC-CCCceEEEEeeecCCCCCCEEEEeeC-----------
Q 010784          173 EPQRTEN-VLVTS---SCDHSIRLWW---KGSCQ---RCFKG-HNGPVSTLSDKLLGDGSGKILASGGE-----------  230 (501)
Q Consensus       173 ~~~~~~~-~l~s~---~~dg~i~vwd---~~~~~---~~~~~-h~~~v~~l~~s~~~~~~~~~l~sg~~-----------  230 (501)
                         .+|. +|++.   ....+|.+++   .+..+   .++.. .....+++.+.    .++.+++|-..           
T Consensus       108 ---~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~----~~g~fy~Tnd~~~~~~~~~~~e  180 (340)
T d1v04a_         108 ---DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV----GPEHFYATNDHYFIDPYLKSWE  180 (340)
T ss_dssp             ---TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE----ETTEEEEEESCSCCSHHHHHHH
T ss_pred             ---CCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe----cCCCEEEecCccCcChhhhhhh
Confidence               1333 33333   2345677775   22111   12221 12345677765    56777777210           


Q ss_pred             ----CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC
Q 010784          231 ----DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS  291 (501)
Q Consensus       231 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~  291 (501)
                          -+...+|..+.+..       ......-..-+.|+++|+...++++-+..+.|++|++...
T Consensus       181 ~~~~~~~g~v~~~~~~~~-------~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         181 MHLGLAWSFVTYYSPNDV-------RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             HHTTCCCEEEEEECSSCE-------EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             HhhcCCceeEEEEcCCce-------EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence                12334444444321       2222222346788998855566666777888999988654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.00  E-value=3.3  Score=35.59  Aligned_cols=145  Identities=10%  Similarity=0.080  Sum_probs=80.8

Q ss_pred             ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc-----ceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784          260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR-----SSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT  334 (501)
Q Consensus       260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  334 (501)
                      ...-+++++ ...++++|+.++ +.|..+..-....     .......... ..+..+.++.+.+.+..++.+..++...
T Consensus        38 ~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i-p~v~~vafs~d~l~v~~~~~l~~~~~~~  114 (381)
T d1xipa_          38 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI-PDVIFVCFHGDQVLVSTRNALYSLDLEE  114 (381)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC-TTEEEEEEETTEEEEEESSEEEEEESSS
T ss_pred             ccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC-CCeEEEEeeCCEEEEEeCCCEEEEEeec
Confidence            455678885 455777777775 5666543211000     0011111112 2466777888888888888899998877


Q ss_pred             CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEe
Q 010784          335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGG  409 (501)
Q Consensus       335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~g  409 (501)
                      ............++.++.++|.. .++....+.+.++++..++...-..-+..+. -.+.+.+++|++. ..++++
T Consensus       115 l~~~~~~~~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         115 LSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQLAQNVTSFD-VTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             TTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEEEEESEEEEE-ECSSEEEEEETTSCEEEEEE
T ss_pred             cccccccccccccccceecCCce-eEEEecCCCEEEEEeccCccccccCCcceEE-ecCCceEEEEeCCcEEEEEe
Confidence            66655555556678888887753 3333444448889988764210000000111 1245667777776 444444

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.30  E-value=3.7  Score=35.27  Aligned_cols=103  Identities=8%  Similarity=-0.068  Sum_probs=64.9

Q ss_pred             CcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCccc
Q 010784          346 PILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGML  425 (501)
Q Consensus       346 ~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~  425 (501)
                      ..|..++|+-+  .++....+++..++.......      .....-..++..+.++|..+++.. .+|.+.++++.+++.
T Consensus        87 p~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~------~~~~~~~~~~~~~~~~p~~~~l~~-~~~~~~~~~l~~~~~  157 (381)
T d1xipa_          87 PDVIFVCFHGD--QVLVSTRNALYSLDLEELSEF------RTVTSFEKPVFQLKNVNNTLVILN-SVNDLSALDLRTKST  157 (381)
T ss_dssp             TTEEEEEEETT--EEEEEESSEEEEEESSSTTCE------EEEEECSSCEEEEEECSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred             CCeEEEEeeCC--EEEEEeCCCEEEEEeeccccc------cccccccccccceecCCceeEEEe-cCCCEEEEEeccCcc
Confidence            35888999644  566666666888877764321      222223456888888888555543 789999999988754


Q ss_pred             ccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784          426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTAS  457 (501)
Q Consensus       426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~  457 (501)
                      ......-....-...+.+++|++.|..++++.
T Consensus       158 ~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         158 KQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             ccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            32211000001134578889999998888875

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.07  E-value=3.9  Score=34.62  Aligned_cols=122  Identities=11%  Similarity=0.075  Sum_probs=67.2

Q ss_pred             CcEEEEEcCCCceE----eeecc-CCCcEEEEEEcCCCcEEEEEc---C-------------CcEEEEecCCCCCCCCCC
Q 010784          325 SSVVTIDLRTMQKV----MTPAI-CKPILHSFSIMPSKSLICTGG---I-------------GKAMTWDIRRSQDAVKPQ  383 (501)
Q Consensus       325 ~~i~~~d~~~~~~~----~~~~~-~~~~v~~v~~~~~~~~l~~~~---~-------------d~i~iwd~~~~~~~~~~~  383 (501)
                      .+|.++++......    .++.. .....+.+++..++.+++|-.   .             ....+|....++.     
T Consensus       124 ~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-----  198 (340)
T d1v04a_         124 STVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-----  198 (340)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-----
T ss_pred             ceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-----
Confidence            36888877543321    22221 134578999999999888832   1             1123333332221     


Q ss_pred             CcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec-cccEEEEe
Q 010784          384 PMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV-SGCRIVTA  456 (501)
Q Consensus       384 ~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~  456 (501)
                        ......-...+.|+++|+  .++++-+..++|++|++.....+......   .-....-.+.+.+ +|.+.+++
T Consensus       199 --~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~---~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         199 --RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL---SFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             --EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE---ECSSEEEEEEECTTTCCEEEEE
T ss_pred             --EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe---cCCCCCCccEEecCCCEEEEEE
Confidence              222222356789999998  67777788999999998754322221100   0123344566665 44444444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.09  E-value=7  Score=35.92  Aligned_cols=55  Identities=11%  Similarity=0.066  Sum_probs=39.0

Q ss_pred             CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784          413 LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP  475 (501)
Q Consensus       413 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~  475 (501)
                      |.|.-+|+.+|+.+-....+.      ++..-.++..|.++++|+  .||.++.+|..+++..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~------p~~~g~lstagglVF~Gt--~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL------PLWAGVLATAGNLVFTGT--GDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS------CCCSCCEEETTTEEEEEC--TTSEEEEEETTTCCEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC------CCccceeEEcCCeEEEeC--CCCeEEEEECCCCcEe
Confidence            678888988888877764332      223333556788888887  5699999998877753

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.26  E-value=4.7  Score=32.74  Aligned_cols=219  Identities=14%  Similarity=0.127  Sum_probs=94.8

Q ss_pred             cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC---------CeEEEEECCCCccccceecccce
Q 010784          233 TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD---------SKVRVWDTSTSSAVRSSCCVGMT  303 (501)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~~~~~  303 (501)
                      .+.+||+.++.-    ..+..+......- .+...  ++.+++.|+..         ..+.+||..+.+.....    ..
T Consensus        20 ~~~~yd~~t~~W----~~~~~~p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~----~~   88 (288)
T d1zgka1          20 YLEAYNPSNGTW----LRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA----PM   88 (288)
T ss_dssp             CEEEEETTTTEE----EECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC----CC
T ss_pred             eEEEEECCCCeE----EECCCCCCcccee-EEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccc----cc
Confidence            577999888642    1222222212111 22222  55666666531         35677887766442211    11


Q ss_pred             ecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCCceEeeeccCCC-cEEEEEEcCCCcEEEEEcC-----Cc-EE
Q 010784          304 SVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTMQKVMTPAICKP-ILHSFSIMPSKSLICTGGI-----GK-AM  369 (501)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~~-----d~-i~  369 (501)
                      .....-..+....+.+++..+       .....+|..+............ .-.++... ++.+++.|+.     .. +.
T Consensus        89 p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~  167 (288)
T d1zgka1          89 SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAE  167 (288)
T ss_dssp             SSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEE
T ss_pred             cceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEE
Confidence            111111112222344444432       1455677766544322111111 11112222 4555555552     23 77


Q ss_pred             EEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCcccccccccCCCCCCCcceeee
Q 010784          370 TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGMLANSLLCNYPEEADISTGCS  444 (501)
Q Consensus       370 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  444 (501)
                      .||..+.+...    ..... ......+.......+++.|+.+     .....+|..+.+....-..     ........
T Consensus       168 ~~d~~~~~~~~----~~~~~-~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-----p~~r~~~~  237 (288)
T d1zgka1         168 CYYPERNEWRM----ITAMN-TIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM-----KHRRSALG  237 (288)
T ss_dssp             EEETTTTEEEE----CCCCS-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC-----SSCCBSCE
T ss_pred             Eeecccccccc----ccccc-cccccccccceeeeEEEecCccccccccceeeeeecceeeecccCc-----cCcccceE
Confidence            88877654210    00000 1111223444445455554333     2467777766443222110     11112222


Q ss_pred             EeeccccEEEEeecCCC---ceEEEeeccCCc
Q 010784          445 AMAVSGCRIVTASYGEP---GLLQFRDFSNAT  473 (501)
Q Consensus       445 ~~s~~g~~l~s~~~d~~---g~i~~w~~~~~~  473 (501)
                      +...++++++.|+.+..   ..|.+||...+.
T Consensus       238 ~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         238 ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            22347888888875422   236777777654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.16  E-value=8.9  Score=33.49  Aligned_cols=235  Identities=11%  Similarity=0.007  Sum_probs=108.0

Q ss_pred             cCcEEEEe-eC----CCceEEec--CCceee-eccCCCCceEEEEeeecCCCCCCEEEEeeCC----------------C
Q 010784          177 TENVLVTS-SC----DHSIRLWW--KGSCQR-CFKGHNGPVSTLSDKLLGDGSGKILASGGED----------------A  232 (501)
Q Consensus       177 ~~~~l~s~-~~----dg~i~vwd--~~~~~~-~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d----------------g  232 (501)
                      ++++++.+ +.    ...+++.|  +++.+. .+.  ......++|.    ++++.|+-...+                .
T Consensus       135 d~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~----~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~  208 (430)
T d1qfma1         135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWT----HDGKGMFYNAYPQQDGKSDGTETSTNLHQ  208 (430)
T ss_dssp             TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEEC----TTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred             CCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEc----CCCCEEEEEEeccccCcccccccccCCcc
Confidence            78877743 22    24688888  555443 221  1122457786    677766543322                2


Q ss_pred             cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEE-Ee--CCCeEEE--EECCCCccccceec--ccce-e
Q 010784          233 TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT-IS--KDSKVRV--WDTSTSSAVRSSCC--VGMT-S  304 (501)
Q Consensus       233 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s-~s--~dg~v~v--wd~~~~~~~~~~~~--~~~~-~  304 (501)
                      .|..+.+.+...  ...++.........+..+..+. ++.+++. .+  .+....+  .|+...........  .... .
T Consensus       209 ~v~~h~lgt~~~--~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  285 (430)
T d1qfma1         209 KLYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (430)
T ss_dssp             EEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             eEEEEECCCCcc--ccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecc
Confidence            577777776543  1112222222223455566665 5555543 22  2333344  45443221100000  0000 1


Q ss_pred             cCCCceeeecCCCeEEEEeC-----CcEEEEEcCCCce---EeeeccCCCcEEEEEEcCCCcEEE-EEcCCc---EEEEe
Q 010784          305 VPGVPVDMKCHESMLYIASG-----SSVVTIDLRTMQK---VMTPAICKPILHSFSIMPSKSLIC-TGGIGK---AMTWD  372 (501)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~---~~~~~~~~~~v~~v~~~~~~~~l~-~~~~d~---i~iwd  372 (501)
                      .......+...++..++.+.     ..+...++.....   ...+..+...+..-.+...+.+|+ ....++   |++++
T Consensus       286 ~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~  365 (430)
T d1qfma1         286 FEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD  365 (430)
T ss_dssp             SSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred             cccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEE
Confidence            11112223334445555543     2566666654322   122333444454333333444444 444443   89999


Q ss_pred             cCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEe-c--CCCcEEEEeCCCcccc
Q 010784          373 IRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGG-R--DDLRINIWETDTGMLA  426 (501)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~g-s--~dg~i~iwd~~~~~~~  426 (501)
                      +..++..      .......+.|..+...+.  .+..+- |  .=.++.-+|+.+++.-
T Consensus       366 ~~~~~~~------~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         366 LATGALL------KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             TTTCCEE------EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred             CCCCcEE------EecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence            8876532      222222345555554444  333332 2  2367888898887643

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=86.39  E-value=7.1  Score=31.57  Aligned_cols=219  Identities=12%  Similarity=0.137  Sum_probs=107.4

Q ss_pred             CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee
Q 010784          153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG  229 (501)
Q Consensus       153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~  229 (501)
                      ...|..|+--.              ...++ -. ||.|..|-   .+++- .-......|..+..     .+...++.  
T Consensus        25 ~~~i~~va~G~--------------~h~~a-l~-dG~v~~wG~N~~GQlG-~~~~~~~~v~~v~~-----G~~~~~al--   80 (273)
T d1jtdb_          25 QSGVDAIAGGY--------------FHGLA-LK-GGKVLGWGANLNGQLT-MPAATQSGVDAIAA-----GNYHSLAL--   80 (273)
T ss_dssp             SSSEEEEEECS--------------SEEEE-EE-TTEEEEEECCTTSTTS-CCGGGGSCCCEEEE-----CSSEEEEE--
T ss_pred             CCCcEEEEccC--------------CEEEE-EE-CCEEEEEeCCCCCcee-eeecccccceEEec-----CCCceeee--
Confidence            44577776532              33343 34 89999993   33221 11122345666653     23333333  


Q ss_pred             CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc
Q 010784          230 EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP  309 (501)
Q Consensus       230 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  309 (501)
                      .||.+..|......+     . .........+..+...  ....++  -.|+.+..|.-........     .......+
T Consensus        81 ~dg~v~~wG~~~~gq-----~-~~~~~~~~~~~~i~~~--~~~~~~--~~dg~v~~~g~~~~~~~~~-----~~~~~~~v  145 (273)
T d1jtdb_          81 KDGEVIAWGGNEDGQ-----T-TVPAEARSGVDAIAAG--AWASYA--LKDGKVIAWGDDSDGQTTV-----PAEAQSGV  145 (273)
T ss_dssp             ETTEEEEEECCTTST-----T-CCCGGGGSSCCEEEEE--TTEEEE--EETTEEEEEECCTTSTTSC-----CGGGGSSE
T ss_pred             eeeeeeccCCCccee-----e-ccccccccceeEEeee--cccccc--cccccceecccCCCCceee-----eccCCceE
Confidence            489999998765432     1 1111112334444443  222222  2488999997543321110     00111222


Q ss_pred             eeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCccccc
Q 010784          310 VDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELD  389 (501)
Q Consensus       310 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~  389 (501)
                      ..+........+...+.+..|.................|..|+....- .++ -.++.|+.|=......+  ..+...  
T Consensus       146 ~~~~~~~~~~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~h-~~~-l~dG~v~~WG~n~~Gql--~~~~~~--  219 (273)
T d1jtdb_         146 TALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLA-LKDGKVIAWGDNRYKQT--TVPTEA--  219 (273)
T ss_dssp             EEEEECSSEEEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSSE-EEE-EETTEEEEEECCTTSTT--CCCGGG--
T ss_pred             EEEeccceeeeeecccceeEeecccCCcccccccccCCccceecccee-eEE-EecCcEEEcCCCCCCcc--CCCccC--
Confidence            333333444445556677777654433322222235567777764332 222 23444999966544333  222222  


Q ss_pred             CcccCeEEEEecCCeEEEEecCCCcEEEEeC
Q 010784          390 GHVGSVTQLHMDPYKIVTGGRDDLRINIWET  420 (501)
Q Consensus       390 ~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~  420 (501)
                        ...|..|+......++.  .||.|..|-.
T Consensus       220 --~~~v~~I~~G~~~~~~l--~~g~v~~WG~  246 (273)
T d1jtdb_         220 --LSGVSAIASGEWYSLAL--KNGKVIAWGS  246 (273)
T ss_dssp             --GSSCCEEEECSSCEEEE--ETTEEEEEST
T ss_pred             --CCCcEEEEeCcceEEEE--ECCEEEEECC
Confidence              23477777665533443  3799999953

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=86.12  E-value=8.8  Score=32.41  Aligned_cols=156  Identities=8%  Similarity=0.036  Sum_probs=83.1

Q ss_pred             CCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee--CCC--ceEEec-
Q 010784          120 NNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS--CDH--SIRLWW-  194 (501)
Q Consensus       120 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg--~i~vwd-  194 (501)
                      |+..+++.....+-+.+||++  ++.+..+.  .+.++.|..-...     .  ......-++.++  .++  +|.+|. 
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~--G~~l~~~~--~Gr~NNVDvr~~~-----~--l~~~~~di~vasnR~~~~~~l~~~~i  106 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE--GKMLHSYH--TGKLNNVDIRYDF-----P--LNGKKVDIAAASNRSEGKNTIEIYAI  106 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT--CCEEEECC--SSCEEEEEEEEEE-----E--ETTEEEEEEEEEECCTTTCEEEEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC--CcEEEecc--cCCcCcccccccc-----c--cCCcceEEEEEeCCcCcceeEEEEEe
Confidence            455666655666679999987  35555553  3566666654200     0  000222344444  223  466674 


Q ss_pred             --CCceeeeccCC-------CCceEEEEeeecCCCCCC-EEEEeeCCCcEEEEeccCCCc-cccccceeeccCCCCceeE
Q 010784          195 --KGSCQRCFKGH-------NGPVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLSSSGK-RGQQALKATLYGHEKPIKL  263 (501)
Q Consensus       195 --~~~~~~~~~~h-------~~~v~~l~~s~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~  263 (501)
                        ....+..+...       ...+..+|+... ..++. +++....+|.+..|.+..... ......+..+. -...+..
T Consensus       107 d~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~-~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EG  184 (353)
T d1h6la_         107 DGKNGTLQSITDPNRPIASAIDEVYGFSLYHS-QKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEG  184 (353)
T ss_dssp             ETTTTEEEECSCSSSCEECSSSSCCCEEEEEC-TTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEE
T ss_pred             cCcccccccccccccccccccCcceEEEEEec-CCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccce
Confidence              33333333221       124566665211 12343 567778899999998754321 11223344444 3456778


Q ss_pred             EEEeecCCeEEEEEeCCCeEEEEECC
Q 010784          264 MSVAGHKSFLLVTISKDSKVRVWDTS  289 (501)
Q Consensus       264 l~~~~~~~~~l~s~s~dg~v~vwd~~  289 (501)
                      +.+.. ....|+.+-++..|..++..
T Consensus       185 CVvDd-e~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         185 MAADD-EYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEEET-TTTEEEEEETTTEEEEEESS
T ss_pred             EEEeC-CCCcEEEecCccceEEEEec
Confidence            88885 45567777777666655554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.34  E-value=8.2  Score=34.06  Aligned_cols=59  Identities=10%  Similarity=0.044  Sum_probs=37.5

Q ss_pred             CCcEEEEEEcCCCcEEEEEcC-CcEEEEecCCCCCCCCC--CCcccccCcccCeEEEEecCC
Q 010784          345 KPILHSFSIMPSKSLICTGGI-GKAMTWDIRRSQDAVKP--QPMAELDGHVGSVTQLHMDPY  403 (501)
Q Consensus       345 ~~~v~~v~~~~~~~~l~~~~~-d~i~iwd~~~~~~~~~~--~~~~~~~~h~~~v~~l~~~~~  403 (501)
                      -....+|+|.|+++++++--. +.|++++..+++.....  ..+.....-++....|+++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            346679999999999998864 55999987775431000  000111122457889999985