Citrus Sinensis ID: 010785

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-
MIKQILNKFPRKPSKSSDYREGGGTSTSSSHASANSRNSDLAGNRYANPSNVSNSAINSVANVGVNHGNKFPQAVNSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEIAAMKAASNEPVLISPKTATRPRTG
cHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
cHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccc
MIKQIlnkfprkpskssdyregggtstssshasansrnsdlagnryanpsnvsnsaINSVANvgvnhgnkfpqavnsklngnplayyealpsfkdvpnaekqNLFVRKLNLCCvvfdftdptknlkekdikRQTLVELVDYVssangkfpEVVMQEMVKMVSANLFrtltspprenkvleafdleeeepsmdpawphLQVVYEFLLRLLdlfdsedprEREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIIngfalplkeEHKLFLVRAliplhkpkcvaMYHQQLSYCITQFVEKDCKLADTVIRGLLkywpvtnstkEVMFLGELEEVlestqpgefqrcmvplfhqigrclssshFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEIAAMKaasnepvlispktatrprtg
mikqilnkfprkpskssdyregggtstssshasansrNSDLAGNRYANPSNVSNSAINSVANVGVNHGNKFPQAVNSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFtdptknlkekdikrqtlVELVDYVSSANGKFPEVVMQEMVKMVSANLfrtltsppreNKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRLLDLFDSEDPREREYLKTVLHRIygkfmvhrpfIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEIAamkaasnepvlispktatrprtg
MIKQILNKFPRKPSKSSDYREGGGtstssshasansrnsDLAGNRYanpsnvsnsainsvanvgvnHGNKFPQAVNSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEIAAMKAASNEPVLISPKTATRPRTG
*************************************************************NVGVNHGNKFPQAVNSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTL************************AWPHLQVVYEFLLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQ***********************************************
*******************************************************************************************SFKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEEC*********************WKRL***************************
MIKQILNKFP****************************SDLAGNRYANPSNVSNSAINSVANVGVNHGNKFPQAVNSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEIAAMKAASNEPVLISPK********
**************************************************************************************YEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPP*****LEAFDLEEEEPSMDPAWPHLQVVYEFLLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEIAAMKA*******************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIKQILNKFPRKPSKSSDYREGGGTSTSSSHASANSRNSDLAGNRYANPSNVSNSAINSVANVGVNHGNKFPQAVNSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEIAAMKAASNEPVLISPKTATRPRTG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query501 2.2.26 [Sep-21-2011]
Q9LU89510 Serine/threonine protein yes no 0.964 0.947 0.707 0.0
Q8LF36492 Serine/threonine protein no no 0.876 0.892 0.733 0.0
Q8RW96522 Serine/threonine protein no no 0.960 0.921 0.659 0.0
Q9LVE2546 Serine/threonine protein no no 0.970 0.890 0.638 0.0
Q9ZQY6477 Serine/threonine protein no no 0.896 0.941 0.595 1e-169
O04376499 Serine/threonine protein no no 0.932 0.935 0.600 1e-164
O04375495 Serine/threonine protein no no 0.920 0.931 0.587 1e-161
Q93YV6500 Serine/threonine protein no no 0.944 0.946 0.528 1e-150
Q9SV41497 Serine/threonine protein no no 0.850 0.857 0.564 1e-141
Q28653586 Serine/threonine-protein yes no 0.922 0.788 0.467 1e-129
>sp|Q9LU89|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1 Back     alignment and function desciption
 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/510 (70%), Positives = 409/510 (80%), Gaps = 27/510 (5%)

Query: 1   MIKQILNKFPRKPSKSSDYR---EGGGTSTSSSHASANSRNSDLAGNRYANPSNVSNSAI 57
           M KQIL+K P K S   ++R    GG +S+SS  + A++  S   G   ++  N S +  
Sbjct: 1   MWKQILSKLPNKKSSKHEHRGREHGGHSSSSSHTSGASTSKSTDNGAAKSHAKNASPAGK 60

Query: 58  NSVANVGVNHGN-KFPQAVNSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVF 116
           ++ ++ G   GN K     N+  N      YEALPSFKDVPN EKQNLF++KLNLC VVF
Sbjct: 61  SAASDSGFKDGNLKSSGNNNNNNNNGVFTPYEALPSFKDVPNTEKQNLFIKKLNLCRVVF 120

Query: 117 DFTDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPREN 176
           DFTDPTKN+KEKDIKRQTL+ELVDYV+S NGKF EV +QE+V+MVSAN+FRTL   PREN
Sbjct: 121 DFTDPTKNIKEKDIKRQTLLELVDYVNSPNGKFSEVGIQEVVRMVSANIFRTLNPQPREN 180

Query: 177 KVLEAFDLEEEEPSMDPAWPHLQVVYE-----------------------FLLRLLDLFD 213
           KV++A DLEEEEPSMD AWPHLQ+VYE                       F+LRLLDLFD
Sbjct: 181 KVIDALDLEEEEPSMDLAWPHLQLVYELFLRFVASPETDTKLAKRYIDQSFVLRLLDLFD 240

Query: 214 SEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSII 273
           SEDPRER+ LKT+LHRIYGKFMVHRPFIRK+INNIFYRF+FETEKHNGIAE LEILGSII
Sbjct: 241 SEDPRERDCLKTILHRIYGKFMVHRPFIRKSINNIFYRFVFETEKHNGIAEFLEILGSII 300

Query: 274 NGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKY 333
           NGFALPLK+EHK+FLVR LIPLHKPKC+ MYHQQLSYCITQFVEKDCKLADTVIRGLLKY
Sbjct: 301 NGFALPLKDEHKVFLVRVLIPLHKPKCLQMYHQQLSYCITQFVEKDCKLADTVIRGLLKY 360

Query: 334 WPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNN 393
           WPVTNS+KEVMFL ELEEVLE+TQP EFQRCMVPLF QI RCL+S HFQVAERALFLWNN
Sbjct: 361 WPVTNSSKEVMFLNELEEVLEATQPPEFQRCMVPLFRQIARCLNSLHFQVAERALFLWNN 420

Query: 394 DHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKF 453
           +HIENLI QNRKVILPIIFPALERNA+KHWNQAV SLTLNVRKIF D+DPELF+ECL KF
Sbjct: 421 NHIENLIMQNRKVILPIIFPALERNAQKHWNQAVHSLTLNVRKIFHDLDPELFKECLAKF 480

Query: 454 QEDEAKEEEIKMKREATWKRLEEIAAMKAA 483
           +EDE+K  E + KREATWKRLEE+   KA+
Sbjct: 481 KEDESKAAETEAKREATWKRLEELGVRKAS 510
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LF36|2A5T_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2 Back     alignment and function description
>sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2 Back     alignment and function description
>sp|Q9LVE2|2A5Z_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2 Back     alignment and function description
>sp|Q9ZQY6|2A5D_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana GN=B'DELTA PE=1 SV=1 Back     alignment and function description
>sp|O04376|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1 Back     alignment and function description
>sp|O04375|2A5A_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1 Back     alignment and function description
>sp|Q93YV6|2A5I_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1 Back     alignment and function description
>sp|Q9SV41|2A5E_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1 Back     alignment and function description
>sp|Q28653|2A5D_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cuniculus GN=PPP2R5D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query501
449524868524 PREDICTED: serine/threonine protein phos 1.0 0.956 0.776 0.0
449441388524 PREDICTED: LOW QUALITY PROTEIN: serine/t 1.0 0.956 0.776 0.0
307136231524 protein phosphatase 2a [Cucumis melo sub 1.0 0.956 0.774 0.0
224141269530 predicted protein [Populus trichocarpa] 0.986 0.932 0.810 0.0
356574028523 PREDICTED: serine/threonine protein phos 0.990 0.948 0.776 0.0
356511544534 PREDICTED: serine/threonine protein phos 0.994 0.932 0.741 0.0
356571427536 PREDICTED: serine/threonine protein phos 0.998 0.932 0.729 0.0
255547836524 protein phosphatase 2a, regulatory subun 0.998 0.954 0.761 0.0
449450399525 PREDICTED: serine/threonine protein phos 0.990 0.944 0.747 0.0
224107677526 predicted protein [Populus trichocarpa] 1.0 0.952 0.743 0.0
>gi|449524868|ref|XP_004169443.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/524 (77%), Positives = 453/524 (86%), Gaps = 23/524 (4%)

Query: 1   MIKQILNKFPRKPSKSSDYREGGGTSTSSSHASANSRNSDLAGNRYANPSNVSNSAINSV 60
           MIKQILN+ PRKPSKS+++REG GT+ SSS+AS + R++DLA N + N    S S  NS 
Sbjct: 1   MIKQILNRLPRKPSKSTEHREGAGTTISSSNASTSLRSNDLAANHHTNTGTGSFSGPNST 60

Query: 61  ANVGVNHGNKFPQAVNSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTD 120
            +VG+NHG+K  Q +NSK NGN    YEALP FKDVPN+EKQ+LF++KLN+CCVVFDFTD
Sbjct: 61  LSVGLNHGSKPSQGLNSKSNGNSQVSYEALPGFKDVPNSEKQSLFIKKLNMCCVVFDFTD 120

Query: 121 PTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVLE 180
           P+KNLKEKDIKRQTL+ELVDYV+SANGK  E V+QE+VKMVS+NLFRT T P R+NK LE
Sbjct: 121 PSKNLKEKDIKRQTLIELVDYVASANGKLSENVIQEIVKMVSSNLFRTPTIPSRDNKALE 180

Query: 181 AFDLEEEEPSMDPAWPHLQVVYEFLLR-----------------------LLDLFDSEDP 217
           AFDLEEEEPSMDPAWPHLQVVYEFLLR                       LLDLFDSEDP
Sbjct: 181 AFDLEEEEPSMDPAWPHLQVVYEFLLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDP 240

Query: 218 REREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFA 277
           RER+YLKTVLHRIYGKFMVHRPFIRK+INNIFYRF+FETEKHNGIAELLEILGSIINGFA
Sbjct: 241 RERDYLKTVLHRIYGKFMVHRPFIRKSINNIFYRFVFETEKHNGIAELLEILGSIINGFA 300

Query: 278 LPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVT 337
           LPLKEEHKLFLVRALIPLHKPKC+ MYHQQLSYCITQFVEKDCKLADT+IRGLLKYWP+T
Sbjct: 301 LPLKEEHKLFLVRALIPLHKPKCIPMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPIT 360

Query: 338 NSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIE 397
           NS+KEVMFLGELEEVLE+TQP EFQRCMVPLF QIGRCLSSSHFQVAER LFLWNN+HIE
Sbjct: 361 NSSKEVMFLGELEEVLEATQPAEFQRCMVPLFRQIGRCLSSSHFQVAERTLFLWNNNHIE 420

Query: 398 NLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDE 457
           NLIKQNRKVILPIIFPALERN+R HWNQAVQ+LT NVRKIFSD DPELFEECLLKFQE+E
Sbjct: 421 NLIKQNRKVILPIIFPALERNSRNHWNQAVQNLTQNVRKIFSDADPELFEECLLKFQEEE 480

Query: 458 AKEEEIKMKREATWKRLEEIAAMKAASNEPVLISPKTATRPRTG 501
            +E+++K KREA WKRLEEIAA+KAASNE VL++PK A R  +G
Sbjct: 481 TQEKDMKSKREAKWKRLEEIAALKAASNEAVLVTPKVALRAPSG 524

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449441388|ref|XP_004138464.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307136231|gb|ADN34067.1| protein phosphatase 2a [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|224141269|ref|XP_002323997.1| predicted protein [Populus trichocarpa] gi|222866999|gb|EEF04130.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356574028|ref|XP_003555155.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|356511544|ref|XP_003524485.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|356571427|ref|XP_003553878.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|255547836|ref|XP_002514975.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] gi|223546026|gb|EEF47529.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449450399|ref|XP_004142950.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] gi|449494490|ref|XP_004159560.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224107677|ref|XP_002314559.1| predicted protein [Populus trichocarpa] gi|222863599|gb|EEF00730.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query501
TAIR|locus:505006470522 ATB' GAMMA [Arabidopsis thalia 0.960 0.921 0.643 1.7e-171
TAIR|locus:2009912492 AT1G13460 [Arabidopsis thalian 0.592 0.603 0.808 3.7e-131
TAIR|locus:2089905546 AT3G21650 [Arabidopsis thalian 0.602 0.553 0.768 1.6e-125
TAIR|locus:2085099499 ATB' BETA [Arabidopsis thalian 0.554 0.557 0.773 1.9e-121
TAIR|locus:2092080477 ATB' DELTA "serine/threonine p 0.586 0.616 0.721 3.6e-120
TAIR|locus:2142619495 ATB' ALPHA [Arabidopsis thalia 0.576 0.583 0.717 3.9e-115
TAIR|locus:2179499500 AT5G25510 [Arabidopsis thalian 0.614 0.616 0.631 5.6e-109
TAIR|locus:2082677497 AT3G54930 [Arabidopsis thalian 0.560 0.565 0.690 4.4e-107
UNIPROTKB|F1LTI3390 Ppp2r5e "Protein Ppp2r5e" [Rat 0.760 0.976 0.503 1.8e-103
FB|FBgn0042693984 PP2A-B' "PP2A-B'" [Drosophila 0.620 0.316 0.580 5.2e-97
TAIR|locus:505006470 ATB' GAMMA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1667 (591.9 bits), Expect = 1.7e-171, P = 1.7e-171
 Identities = 331/514 (64%), Positives = 380/514 (73%)

Query:     1 MIKQILNKFPRKPSKSSDYREG-GGXXXXXXXXXXXXXXXDLAGNRYXXXXXXXXXXXXX 59
             MIKQI  K PRKPSKSS       G                ++                 
Sbjct:     1 MIKQIFGKLPRKPSKSSHNDSNPNGEGGVNSYYIPNSGISSISKPSSKSSASNSNGANGT 60

Query:    60 XXXXXXXHGNKFPQAVNSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFT 119
                      N+      +++NG     YEALPSF+DVP +EK NLF++KL++CCVVFDF 
Sbjct:    61 VIAPSSTSSNR-----TNQVNG----VYEALPSFRDVPTSEKPNLFIKKLSMCCVVFDFN 111

Query:   120 DPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVL 179
             DP+KNL+EK+IKRQTL+ELVDY+++ + K  +  MQE+ K+   NLFRT  S   E+K+L
Sbjct:   112 DPSKNLREKEIKRQTLLELVDYIATVSTKLSDAAMQEIAKVAVVNLFRTFPSANHESKIL 171

Query:   180 EAFDLEEEEPSMDPAWPHLQVVYEFLLR-----------------------LLDLFDSED 216
             E  D+++EEP+++PAWPHLQVVYE LLR                       LLDLFDSED
Sbjct:   172 ETLDVDDEEPALEPAWPHLQVVYELLLRFVASPMTDAKLAKRYIDHSFVLKLLDLFDSED 231

Query:   217 PREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGF 276
              REREYLKT+LHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGF
Sbjct:   232 QREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGF 291

Query:   277 ALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPV 336
             ALPLKEEHKLFL+RALIPLH+PKC + YHQQLSYCI QFVEKD KLADTVIRGLLKYWPV
Sbjct:   292 ALPLKEEHKLFLIRALIPLHRPKCASAYHQQLSYCIVQFVEKDFKLADTVIRGLLKYWPV 351

Query:   337 TNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHI 396
             TNS+KEVMFLGELEEVLE+TQ  EFQRCMVPLF QI RCL+SSHFQVAERALFLWNNDHI
Sbjct:   352 TNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNDHI 411

Query:   397 ENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQED 456
              NLI QN KVI+PI+FPA+ERN R HWNQAVQSLTLNVRK+ ++ D  LF+ECL KFQED
Sbjct:   412 RNLITQNHKVIMPIVFPAMERNTRGHWNQAVQSLTLNVRKVMAETDQILFDECLAKFQED 471

Query:   457 EAKEEEIKMKREATWKRLEEIAAMKAASNEPVLI 490
             EA E E+  KREATWK LEE+AA K+ SNE VL+
Sbjct:   472 EANETEVVAKREATWKLLEELAASKSVSNEAVLV 505
GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0007165 "signal transduction" evidence=IEA;ISS
GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS
GO:0008266 "poly(U) RNA binding" evidence=IDA
GO:0006555 "methionine metabolic process" evidence=IMP
GO:0010090 "trichome morphogenesis" evidence=IGI
GO:0031348 "negative regulation of defense response" evidence=IMP
GO:0090342 "regulation of cell aging" evidence=IMP
TAIR|locus:2009912 AT1G13460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089905 AT3G21650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085099 ATB' BETA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092080 ATB' DELTA "serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142619 ATB' ALPHA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179499 AT5G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082677 AT3G54930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1LTI3 Ppp2r5e "Protein Ppp2r5e" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0042693 PP2A-B' "PP2A-B'" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LU892A5N_ARATHNo assigned EC number0.70780.96400.9470yesno
Q8LF362A5T_ARATHNo assigned EC number0.73340.87620.8922nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020577001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (525 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query501
pfam01603405 pfam01603, B56, Protein phosphatase 2A regulatory 0.0
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 1e-66
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 3e-11
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) Back     alignment and domain information 
 Score =  581 bits (1501), Expect = 0.0
 Identities = 241/410 (58%), Positives = 306/410 (74%), Gaps = 28/410 (6%)

Query: 93  FKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSAN--GKFP 150
             DVP+ E ++LF++KL  CCV+ DF+DP  +LK K+IKRQTL E+VDYVS+++  GK  
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDFSDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKLT 60

Query: 151 EVVMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLR--- 207
           E +  E+ KM++ N+FR L   P       + D +++EP ++P+WPHL +VYE LLR   
Sbjct: 61  EDLYDEIFKMIAVNIFRPLPPIPNP-----SLDPDDDEPFLEPSWPHLSLVYEILLRFIE 115

Query: 208 ------------------LLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIF 249
                             LLDLFDS DPRER+ LKT LHRIYGKF   RPFIRKAIN+I 
Sbjct: 116 SPPFDPLKKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAINSIL 175

Query: 250 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLS 309
           YRFI+ETEK NG+AELLEILGSIINGFALPLKEEHK FL++ L+PLHK K +++YHQQLS
Sbjct: 176 YRFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQLS 235

Query: 310 YCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLF 369
           YC+ QF+EKD  LA+ VIRGLLK+WPVTNS+KEV+FL ELEE+LE   P EFQ+ MVPLF
Sbjct: 236 YCVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLDELEEILEKIPPEEFQKIMVPLF 295

Query: 370 HQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQS 429
             + RC+SS HFQVAERAL LWNN++  NLI  N K+ILPI+FPAL RNA+ HWNQ+V++
Sbjct: 296 KILARCISSPHFQVAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQSVRN 355

Query: 430 LTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEIAA 479
           L LNV K+  +IDP+LF+EC  K++E EAKE++ + KR+ TW R+ E AA
Sbjct: 356 LALNVLKLLMEIDPDLFDECGNKYKEKEAKEKKKEKKRKKTWARIAEAAA 405

Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits (See also pfam01240), this family is called the B56 family. Length = 405
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 501
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 100.0
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 97.15
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 90.1
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 89.02
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-158  Score=1214.34  Aligned_cols=395  Identities=70%  Similarity=1.156  Sum_probs=389.2

Q ss_pred             CcccccCCCCCCCChHHhHHHHHHHHhcCccceeccCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010785           84 LAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSA  163 (501)
Q Consensus        84 ~~~l~~LP~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsDp~~d~~~KeiKr~tL~ELvd~v~~~~~~lte~i~~~i~~Mvs~  163 (501)
                      +.++++||+|+|||++|+++||++|+++||++|||+||.+|.++||+||+||+||+||+.++++++||.+|+++++|+++
T Consensus        39 ~~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~  118 (457)
T KOG2085|consen   39 NVELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSV  118 (457)
T ss_pred             CCCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCCcCcccccCCCCCCCCCCCCCCchHHHHHHHH-----------------------HHHHhcCCCCChhHH
Q 010785          164 NLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFL-----------------------LRLLDLFDSEDPRER  220 (501)
Q Consensus       164 NiFR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeil-----------------------l~LL~LFdSeDpRER  220 (501)
                      ||||+|||..++++    +|+|||||++|++|||||+|||+|                       ++||+||||||||||
T Consensus       119 nifR~lpp~~n~~~----~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRER  194 (457)
T KOG2085|consen  119 NIFRTLPPSVNPTG----FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPRER  194 (457)
T ss_pred             HhhccCCcccCCCc----CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHH
Confidence            99999999987653    899999999999999999999999                       799999999999999


Q ss_pred             HHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHhhcCCCCCc
Q 010785          221 EYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKC  300 (501)
Q Consensus       221 d~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~  300 (501)
                      |||||+|||||||||+||+||||+||||||+||||||+|||||||||||||||||||+|||||||+||.||||||||+|+
T Consensus       195 e~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~  274 (457)
T KOG2085|consen  195 EFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKS  274 (457)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCc
Q 010785          301 VAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSH  380 (501)
Q Consensus       301 l~~Yh~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~h  380 (501)
                      ++.||+||+|||+||+||||+|+++||+|||||||+|||+||||||||||||||+++|.+|++||+|||+|||+|++|+|
T Consensus       275 l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~H  354 (457)
T KOG2085|consen  275 LSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPH  354 (457)
T ss_pred             ccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhHHHHHHhccccccccchHHHHHhhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 010785          381 FQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKE  460 (501)
Q Consensus       381 fQVAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~l~~nvlk~l~e~D~~lf~~~~~~~~~~~~~~  460 (501)
                      |||||||||+||||||++||++|+++|+|||||+||+|+++|||++|+++++||+|+|||||++||++|+++|++++.++
T Consensus       355 FQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~  434 (457)
T KOG2085|consen  355 FQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKE  434 (457)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q 010785          461 EEIKMKREATWKRLEEIAAMKA  482 (501)
Q Consensus       461 ~~~~~~r~~~W~~le~~A~~~~  482 (501)
                      ++.+++|+++|++||++|+.++
T Consensus       435 ~~~~~~re~~W~~le~~~~~~~  456 (457)
T KOG2085|consen  435 KETEEKREETWKRLEELAAENP  456 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999998765

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query501
2npp_B449 Structure Of The Protein Phosphatase 2a Holoenzyme 1e-124
2iae_B407 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 1e-123
3fga_B403 Structural Basis Of Pp2a And Sgo Interaction Length 1e-122
2nyl_B388 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 1e-115
2jak_A392 Human Pp2a Regulatory Subunit B56g Length = 392 1e-113
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/409 (52%), Positives = 291/409 (71%), Gaps = 26/409 (6%)
Query: 94  KDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEV 152
           +DVP A+++ LF++KL  CCV+FDF +DP  +LK K++KR  L E+V+Y++       E 
Sbjct: 31  RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 90
Query: 153 VMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLR----- 207
           +  E+V M + N+FRTL  PP  N     FD EE+EP+++ AWPHLQ+VYEF LR     
Sbjct: 91  IYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 148
Query: 208 ------------------LLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIF 249
                             LL+LFDSEDPRER++LKT LHRIYGKF+  R +IRK INNIF
Sbjct: 149 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 208
Query: 250 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLS 309
           YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+
Sbjct: 209 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 268
Query: 310 YCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLF 369
           YC+ QF+EKD  L + V+  LLKYWP T+S KEVMFL ELEE+L+  +P EF + M PLF
Sbjct: 269 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 328
Query: 370 HQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQS 429
            Q+ +C+SS HFQVAERAL+ WNN++I +LI  N   ILPI+FP+L RN++ HWN+ +  
Sbjct: 329 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 388
Query: 430 LTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKREATWKRLEEIA 478
           L  N  K+F +++ +LF++C  +F+ ++ KE+    +RE  W ++E +A
Sbjct: 389 LIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLA 437
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 407 Back     alignment and structure
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction Length = 403 Back     alignment and structure
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 388 Back     alignment and structure
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g Length = 392 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query501
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 0.0
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-179
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-159
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 Back     alignment and structure
 Score =  523 bits (1349), Expect = 0.0
 Identities = 218/439 (49%), Positives = 298/439 (67%), Gaps = 26/439 (5%)

Query: 73  QAVNSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIK 131
           + V    N N       L   +DVP A+++ LF++KL  CCV+FDF +DP  +LK K++K
Sbjct: 10  RMVVDAANSNGPFQPVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVK 69

Query: 132 RQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSM 191
           R  L E+V+Y++       E +  E+V M + N+FRTL  PP  N     FD EE+EP++
Sbjct: 70  RAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTL 127

Query: 192 DPAWPHLQVVYE-----------------------FLLRLLDLFDSEDPREREYLKTVLH 228
           + AWPHLQ+VYE                       F+L+LL+LFDSEDPRER++LKT LH
Sbjct: 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLH 187

Query: 229 RIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFL 288
           RIYGKF+  R +IRK INNIFYRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL
Sbjct: 188 RIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFL 247

Query: 289 VRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGE 348
           ++ L+PLHK K +++YH QL+YC+ QF+EKD  L + V+  LLKYWP T+S KEVMFL E
Sbjct: 248 LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNE 307

Query: 349 LEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVIL 408
           LEE+L+  +P EF + M PLF Q+ +C+SS HFQVAERAL+ WNN++I +LI  N   IL
Sbjct: 308 LEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKIL 367

Query: 409 PIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEEIKMKRE 468
           PI+FP+L RN++ HWN+ +  L  N  K+F +++ +LF++C  +F+ ++ KE+    +RE
Sbjct: 368 PIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKERE 427

Query: 469 ATWKRLEEIAAMKAASNEP 487
             W ++E +A       + 
Sbjct: 428 EAWVKIENLAKANPQVLKK 446
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query501
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 100.0
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 91.54
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 91.28
1qgr_A 876 Protein (importin beta subunit); transport recepto 88.22
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 88.14
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 87.46
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 86.91
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 86.17
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 85.86
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
Probab=100.00  E-value=6.8e-141  Score=1114.49  Aligned_cols=396  Identities=54%  Similarity=0.989  Sum_probs=358.8

Q ss_pred             cccCCCCCCCChHHhHHHHHHHHhcCccceec-cCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhh
Q 010785           87 YEALPSFKDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANL  165 (501)
Q Consensus        87 l~~LP~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~KeiKr~tL~ELvd~v~~~~~~lte~i~~~i~~Mvs~Ni  165 (501)
                      +.+||+|+|||++++++||++||++||++||| +||.+|+++||+||+||+||+||++++++++||++|+++++||++||
T Consensus        24 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni  103 (449)
T 2npp_B           24 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM  103 (449)
T ss_dssp             --------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence            45999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCcCcccccCCCCCCCCCCCCCCchHHHHHHHH-----------------------HHHHhcCCCCChhHHHH
Q 010785          166 FRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFL-----------------------LRLLDLFDSEDPREREY  222 (501)
Q Consensus       166 FR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeil-----------------------l~LL~LFdSeDpRERd~  222 (501)
                      ||++||+.++++  ..||+|||||++||+|||||+||++|                       ++||++||||||||||+
T Consensus       104 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~  181 (449)
T 2npp_B          104 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF  181 (449)
T ss_dssp             CCCCCCCSSCCS--SSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHH
T ss_pred             CCCCCCCCCccc--ccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence            999999876543  68999999999999999999999999                       58999999999999999


Q ss_pred             HHHHHHHHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHhhcCCCCCccc
Q 010785          223 LKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVA  302 (501)
Q Consensus       223 LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~l~  302 (501)
                      ||||||||||||+++|+|||++|||+||+||||+++||||+||||||||||||||+|||+||++||.||||||||+++++
T Consensus       182 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~  261 (449)
T 2npp_B          182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS  261 (449)
T ss_dssp             HHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHH
Q 010785          303 MYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQ  382 (501)
Q Consensus       303 ~Yh~qL~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQ  382 (501)
                      .||+||+|||+||++|||+|+++|++|||||||+|||+||||||+|||+||+.++|++|+++++|||++||+|++|+|||
T Consensus       262 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfq  341 (449)
T 2npp_B          262 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ  341 (449)
T ss_dssp             GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred             HhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcchhHHHHHHhccccccccchHHHHHhhhhhhhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 010785          383 VAERALFLWNNDHIENLIKQNRKVILPIIFPALERNARKHWNQAVQSLTLNVRKIFSDIDPELFEECLLKFQEDEAKEEE  462 (501)
Q Consensus       383 VAERAL~~WnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~l~~nvlk~l~e~D~~lf~~~~~~~~~~~~~~~~  462 (501)
                      ||||||++|||++|+++|++|+++|+|+|+|+|++++++|||++||++|++|+++|||||+++|++|+++|+++++++++
T Consensus       342 VAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~  421 (449)
T 2npp_B          342 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKL  421 (449)
T ss_dssp             HHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCC
Q 010785          463 IKMKREATWKRLEEIAAMKAAS  484 (501)
Q Consensus       463 ~~~~r~~~W~~le~~A~~~~~~  484 (501)
                      ++++|+++|++|+++|++++..
T Consensus       422 ~~~~r~~~W~~i~~~A~~~~~~  443 (449)
T 2npp_B          422 KMKEREEAWVKIENLAKANPQV  443 (449)
T ss_dssp             TSCC------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999888753
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 501
d2jaka1343 a.118.1.20 (A:30-372) Serine/threonine-protein pho 1e-169
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  480 bits (1236), Expect = e-169
 Identities = 194/344 (56%), Positives = 249/344 (72%), Gaps = 26/344 (7%)

Query: 94  KDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEV 152
           +DVP A+++ LF++KL  CCV+FDF +DP  +LK K++KR  L E+V+Y++       E 
Sbjct: 2   RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61

Query: 153 VMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLR----- 207
           +  E+V M + N+FRTL  PP  N     FD EE+EP+++ AWPHLQ+VYEF LR     
Sbjct: 62  IYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 119

Query: 208 ------------------LLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIF 249
                             LL+LFDSEDPRER++LKT LHRIYGKF+  R +IRK INNIF
Sbjct: 120 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 179

Query: 250 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLS 309
           YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+
Sbjct: 180 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 239

Query: 310 YCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLF 369
           YC+ QF+EKD  L + V+  LLKYWP T+S KEVMFL ELEE+L+  +P EF + M PLF
Sbjct: 240 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 299

Query: 370 HQIGRCLSSSHFQVAERALFLWNNDHIENLIKQNRKVILPIIFP 413
            Q+ +C+SS HFQVAERAL+ WNN++I +LI  N   ILPI+FP
Sbjct: 300 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 343

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query501
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 100.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 84.38
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 81.1
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-117  Score=903.88  Aligned_cols=319  Identities=60%  Similarity=1.076  Sum_probs=300.3

Q ss_pred             CCCCChHHhHHHHHHHHhcCccceec-cCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhccCCCC
Q 010785           93 FKDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTS  171 (501)
Q Consensus        93 l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~~~KeiKr~tL~ELvd~v~~~~~~lte~i~~~i~~Mvs~NiFR~lPp  171 (501)
                      |+|||++||++||++||++||++||| +||++|+++||+||++|+||+||++++++++||++++++++||++||||++||
T Consensus         1 l~d~~~~e~~~lf~~Kl~~C~~i~DF~~d~~~d~~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~NifR~lPp   80 (343)
T d2jaka1           1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP   80 (343)
T ss_dssp             CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC
T ss_pred             CCCCChHHHHHHHHHHHHHhCcccCCCCCccccHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            68999999999999999999999999 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCcccccCCCCCCCCCCCCCCchHHHHHHHH-----------------------HHHHhcCCCCChhHHHHHHHHHH
Q 010785          172 PPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFL-----------------------LRLLDLFDSEDPREREYLKTVLH  228 (501)
Q Consensus       172 ~~~~~~~~~~~d~eedep~~epaWpHLqlVYeil-----------------------l~LL~LFdSeDpRERd~LKtiLH  228 (501)
                      .+++.  +.+||+|||||++|+||||||+||++|                       .+|+++|+|+||||||+||++||
T Consensus        81 ~~~~~--~~~~~~e~d~~~~e~sWpHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~  158 (343)
T d2jaka1          81 SSNPT--GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLH  158 (343)
T ss_dssp             -----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCCcc--ccccCccccccccCCCCchHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            87654  478999999999999999999999999                       58899999999999999999999


Q ss_pred             HHhhcccCChHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHcccCCCcHHHHHHHHHHHhhcCCCCCccccchHHH
Q 010785          229 RIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQL  308 (501)
Q Consensus       229 riYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~l~~Yh~qL  308 (501)
                      ||||||+++|+|||++|+|+|++||||+++||||+|||||+|||||||++|||+||+.|+.++|+||||+++++.||+||
T Consensus       159 ~iy~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL  238 (343)
T d2jaka1         159 RIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL  238 (343)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCcccHHHHHHHhhccCCCCCchHHhHHHHHHHHHHhcCChhhHHhhhHHHHHHHHHHhCCCcHHHHHHHH
Q 010785          309 SYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVAERAL  388 (501)
Q Consensus       309 ~yCi~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeILe~~~~~eF~~i~~pLF~~la~Ci~S~hfQVAERAL  388 (501)
                      +||++||++|||+|+.++++||+||||+||++|||+||+||++||+.+++++|+++++|+|++||+|++|+|||||||||
T Consensus       239 ~~~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl  318 (343)
T d2jaka1         239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL  318 (343)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcchhHHHHHHhccccccccchH
Q 010785          389 FLWNNDHIENLIKQNRKVILPIIFP  413 (501)
Q Consensus       389 ~~WnNe~i~~li~~n~~~IlPii~p  413 (501)
                      ++|+|++|+++|++|+++|+|+|+|
T Consensus       319 ~~w~N~~~~~li~~n~~~i~Pii~P  343 (343)
T d2jaka1         319 YYWNNEYIMSLISDNAAKILPIMFP  343 (343)
T ss_dssp             GGGGCHHHHHHHHHTHHHHTTTSCC
T ss_pred             HHHCCHHHHHHHHhCccceEeeeCC
Confidence            9999999999999999999999997
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure