Citrus Sinensis ID: 010814

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500
Protein Sequence
MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEHHHHHHHHHHHHHEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcHHHccHHHHHHHHHEEccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHcccHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEHEHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHHHHHHccccccEcccccccccccccEEEEEcccccEEEcccccccccccccccccccHHEHcHEHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHccccEEEEEEcccccHHHHHHHHEcccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEHEEEHccccc
Coil and Loop (DISEMBL)
MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVArgrfslpapsvphnrhwapchaivATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMcralmpgdeesmndEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCtkwsnpvihrspqtrpatsssaityldwnsglvvsaeeeqnpdgmcglsdigghimkvPVIGFQVLLCMHlegtpagarnialpvlfsPLFLLQGVGVVFSTTRLVEKIVILLRSgagtgiyfrissrahdcfgflhrgsrllgwwsidegsredQARLVHenssgyntfcgyppevvkkmpkkELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
Flexible Loop (DISEMBL)
MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNpvihrspqtrpatsssaityLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHenssgyntfcgyppEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
Low Complexity Region (SEG)
MSWRRVLKSVQAVAAHSllltftlllvlklDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYppevvkkmpkkeLAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
Disordered region (IsUnstruct)
****RVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIH************AITYLDWNSGLVVSA******DGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEG*******LVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMI*
Disordered Region (DISOPRED)
********SVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVI*****************LDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQ***********FERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
Disordered Region (DISEMBL)
********SVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHR*********SSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
Disordered Region (DISPRO)
*SWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHR********SSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	500
224132996	466	predicted protein [Populus trichocarpa]	0.828	0.888	0.806	0.0
225455850	466	PREDICTED: uncharacterized protein LOC10	0.826	0.886	0.828	0.0
224118894	467	predicted protein [Populus trichocarpa]	0.828	0.886	0.795	0.0
449477080	467	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.828	0.886	0.775	0.0
356563099	466	PREDICTED: uncharacterized protein LOC10	0.828	0.888	0.785	0.0
449440911	474	PREDICTED: uncharacterized protein LOC10	0.828	0.873	0.763	0.0
356563101	460	PREDICTED: uncharacterized protein LOC10	0.816	0.886	0.780	0.0
255636236	444	unknown [Glycine max]	0.828	0.932	0.772	0.0
217073444	465	unknown [Medicago truncatula]	0.826	0.888	0.785	0.0
356511601	466	PREDICTED: uncharacterized protein LOC10	0.828	0.888	0.772	0.0

>gi|224132996|ref|XP_002321460.1| predicted protein [Populus trichocarpa] gi|222868456|gb|EEF05587.1| predicted protein [Populus trichocarpa]

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/414 (80%), Positives = 371/414 (89%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           M+WRRVLKSVQA+AAH LL +FTL LVLKLDHV+SYSWW++FFP+W FH VVARGRFSLP
Sbjct: 1   MNWRRVLKSVQALAAHCLLFSFTLFLVLKLDHVVSYSWWLIFFPLWTFHVVVARGRFSLP 60

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           APSVP NRHWAPCHA+VATPLLIAFELLLCIYLES+Y +   AVNLKIVF+PLLAFE+ I
Sbjct: 61  APSVPRNRHWAPCHAVVATPLLIAFELLLCIYLESVYVYHIAAVNLKIVFIPLLAFEVII 120

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
           LIDNFRMC+ALMPG+EES++DEAIWE LPHFWVAISMVFFVAATVFTLLKL G VGALGW
Sbjct: 121 LIDNFRMCKALMPGEEESISDEAIWETLPHFWVAISMVFFVAATVFTLLKLGGDVGALGW 180

Query: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNP 240
           WDLFINF IAECFAFLVCTKWSNPVIHR+ QTR A+SS  I YLDWN GL+VS EE Q+ 
Sbjct: 181 WDLFINFSIAECFAFLVCTKWSNPVIHRNSQTREASSSMTIRYLDWNGGLMVSPEENQHQ 240

Query: 241 DGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFST 300
           D MCGL DIGGH+MK+P+IGFQVLLCMHLEGTPAGARNI L VLFSPLFLLQG GV+F+ 
Sbjct: 241 DRMCGLQDIGGHLMKIPLIGFQVLLCMHLEGTPAGARNIPLLVLFSPLFLLQGAGVLFAA 300

Query: 301 TRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 360
           ++L EK+V+LLRS AGTG YF  SSRAHDC GFLH GSRLLGWWSIDEGS+E+QARL H 
Sbjct: 301 SKLAEKLVLLLRSEAGTGRYFTFSSRAHDCLGFLHHGSRLLGWWSIDEGSQEEQARLYHM 360

Query: 361 NSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
             + YNTFCGYPPE+VKKMPKK+LAEEVWRLQAALG+Q+EIT YS+QEFERLQN
Sbjct: 361 GDASYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEFERLQN 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455850|ref|XP_002273782.1| PREDICTED: uncharacterized protein LOC100256061 [Vitis vinifera] gi|297734166|emb|CBI15413.3| unnamed protein product [Vitis vinifera]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/415 (82%), Positives = 380/415 (91%), Gaps = 2/415 (0%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           MSWRRV KS+QA+ AHSLLL+FTLLLVLKL H ISYSWWI+FFP+W+FHAVVARGRFSLP
Sbjct: 1   MSWRRVAKSLQALTAHSLLLSFTLLLVLKLHHTISYSWWIIFFPLWLFHAVVARGRFSLP 60

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           AP VPHNRHWAPCHA+VATPLLIAFELLLCIYLESIY +G  AVNLKI+FLPLLAFEITI
Sbjct: 61  APLVPHNRHWAPCHAVVATPLLIAFELLLCIYLESIYAYGHAAVNLKIIFLPLLAFEITI 120

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
           L+DNFRMC+ALMPGDEESM+DEAIWE LPHFWVAISMVFFVAAT+FTLLKLCG +GALGW
Sbjct: 121 LVDNFRMCKALMPGDEESMSDEAIWETLPHFWVAISMVFFVAATLFTLLKLCGDIGALGW 180

Query: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPA-TSSSAITYLDWNSGLVVSAEEEQN 239
           WDLFINFGIAE FAFLVCTKWSNPVIHR+  T  A +SS+ I YLDWNSGLVVS +E+Q+
Sbjct: 181 WDLFINFGIAESFAFLVCTKWSNPVIHRNSHTTEAGSSSTTIRYLDWNSGLVVSTDEDQH 240

Query: 240 PDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFS 299
            D MCGL DIGGHIMKVP+IGFQVLLCM LEGTPA AR+I +PVLFSP+FLLQG GV+FS
Sbjct: 241 QDRMCGLQDIGGHIMKVPLIGFQVLLCMRLEGTPAAARDIPIPVLFSPIFLLQGAGVLFS 300

Query: 300 TTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVH 359
            +RLVEKIV+LL +GAGTG YF  SSRAHDCFGFLH GSRLLGWWSIDEGSRE+QARLVH
Sbjct: 301 ASRLVEKIVLLLHNGAGTGRYFTYSSRAHDCFGFLHHGSRLLGWWSIDEGSREEQARLVH 360

Query: 360 ENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
           +  +GYNTFCGYPPE+VKKMPKK+LAEEVWRLQAALG+QSEIT YS+QE+ERLQN
Sbjct: 361 DG-AGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQSEITKYSKQEYERLQN 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118894|ref|XP_002317932.1| predicted protein [Populus trichocarpa] gi|222858605|gb|EEE96152.1| predicted protein [Populus trichocarpa]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/415 (79%), Positives = 368/415 (88%), Gaps = 1/415 (0%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           M WRRVLKS+QA+AAHSLL +FTL LVLKLDHV SYSWW++FFP+W FH VVARGRF+LP
Sbjct: 1   MGWRRVLKSLQALAAHSLLFSFTLFLVLKLDHVASYSWWLIFFPLWTFHGVVARGRFALP 60

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           APSVPHNRHWAPCHA+VATPLLIAFELLLCIYLES+Y +   AVNLKIVF+PLLAFEI I
Sbjct: 61  APSVPHNRHWAPCHAVVATPLLIAFELLLCIYLESVYVYHIPAVNLKIVFIPLLAFEIII 120

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
           LIDNFRMC+ALMPG+EES++DEAIWE LPHFWVAISMVFFVAATVFTLLKLCG VGALGW
Sbjct: 121 LIDNFRMCKALMPGEEESISDEAIWETLPHFWVAISMVFFVAATVFTLLKLCGDVGALGW 180

Query: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSS-AITYLDWNSGLVVSAEEEQN 239
           WDLFINF IAE FAFLVCTKWSNP IHR+ +TR  +SSS  I YLDWN GL+VS EE Q+
Sbjct: 181 WDLFINFSIAEFFAFLVCTKWSNPAIHRNSRTREVSSSSTTIRYLDWNGGLMVSPEENQH 240

Query: 240 PDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFS 299
            D MCGL +IGGHIMK+P+IGFQVLL MHLEG PAGARN+   VLFSPLFLLQG GV+F+
Sbjct: 241 QDRMCGLQEIGGHIMKIPLIGFQVLLFMHLEGRPAGARNLPFLVLFSPLFLLQGAGVLFA 300

Query: 300 TTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVH 359
            ++L EK+++LLRS AGTG YFR SSRAHDC GFLH GSRLLGWWSIDEGSRE+QARL H
Sbjct: 301 ASKLAEKLILLLRSEAGTGRYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYH 360

Query: 360 ENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
              +GYNTFCGYPPE+VKKMPKK+LAEEVWRLQAALG+Q+EIT YS+QEFERL N
Sbjct: 361 GGDAGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEFERLTN 415

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477080|ref|XP_004154923.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101215825 [Cucumis sativus]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/415 (77%), Positives = 368/415 (88%), Gaps = 1/415 (0%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           M+WRRVLKSVQA+ AH  L  FTLLLVLKLDH +S+SWW+VFFP+W+FH VVARGRFSLP
Sbjct: 1   MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVVFFPLWVFHVVVARGRFSLP 60

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           APS+PHNRHWAPCHA+VATPLLIAFELLLC+YLES+  +GF AVNLKIVFLPLLAFEI I
Sbjct: 61  APSLPHNRHWAPCHAVVATPLLIAFELLLCVYLESLSVYGFTAVNLKIVFLPLLAFEIII 120

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
           LIDNFRMCR+LMPGD+ESM+DEAIWE LPHFWVAISMVFFVAATVFTLLKL G VGALGW
Sbjct: 121 LIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGNVGALGW 180

Query: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRP-ATSSSAITYLDWNSGLVVSAEEEQN 239
           WDLFINFGIAECFAFLVCTKWSNP IHR+ QTR   +SSS + YLDWNSGL+V  E++Q+
Sbjct: 181 WDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRERCSSSSVVRYLDWNSGLIVYPEQDQH 240

Query: 240 PDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFS 299
            D +CGL DIGGHIMK+P+I FQ+LLCM+LEGTPA A+N+ LP+LFSPLF+LQG  V+++
Sbjct: 241 QDRICGLQDIGGHIMKIPIIXFQILLCMYLEGTPAAAKNMPLPILFSPLFMLQGAAVIYA 300

Query: 300 TTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVH 359
           T+RL+EK V+LLR G+GT +YF  S RAH C  F H GSRLLGWWSIDE SRE+QARL H
Sbjct: 301 TSRLLEKAVLLLRGGSGTALYFSFSIRAHACLEFFHHGSRLLGWWSIDESSREEQARLYH 360

Query: 360 ENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
           E +SGYNTF GYPPEVVKKMPKK+LAEEVWRLQAALG+Q+EIT YS+QE+ERLQN
Sbjct: 361 EGASGYNTFSGYPPEVVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQN 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563099|ref|XP_003549803.1| PREDICTED: uncharacterized protein LOC100791390 isoform 1 [Glycine max]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/414 (78%), Positives = 366/414 (88%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           MSWRRVL S QA+AAH+ LL FTL LVLKLDH +S SWW++F P+W+FH VVARGRFSLP
Sbjct: 1   MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHNLSCSWWVIFSPLWMFHGVVARGRFSLP 60

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           APS P NR+WAPCHA++ATPLLIAFELLLCIYLES+Y+ G+ AV+LKIVFLPLL FEI I
Sbjct: 61  APSAPRNRNWAPCHAVIATPLLIAFELLLCIYLESLYDLGYAAVDLKIVFLPLLTFEIII 120

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
           LIDNFRMC+ALMPGDEE+M+DEAIWE LPHFWVAISMVFF+AATVFTLLKL G VGALGW
Sbjct: 121 LIDNFRMCKALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGW 180

Query: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNP 240
           WDLFINF IAECFAFLVCTKWSNPVIHR+ +   ++SS+ ITYLDWNSGLVVS +E Q+ 
Sbjct: 181 WDLFINFAIAECFAFLVCTKWSNPVIHRNSREASSSSSTTITYLDWNSGLVVSTDENQHQ 240

Query: 241 DGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFST 300
             MC L DIGGH MKVP+I FQVLLCMHLEGTPA A +I LPV+FSPLFLLQG GV+ S 
Sbjct: 241 GRMCSLQDIGGHFMKVPIIVFQVLLCMHLEGTPACAVHIPLPVIFSPLFLLQGAGVMLSA 300

Query: 301 TRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 360
           ++L EK+V+LLRSGAG GIYFR SSRAHDC GFLH GSRLLGWWSIDEGSRE+QARL HE
Sbjct: 301 SKLGEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHE 360

Query: 361 NSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
            + GYNTFCGYPPE+VKKMPKKELAEEVWRLQAALG+Q+EIT +S+QE+ERLQN
Sbjct: 361 GAIGYNTFCGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQN 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440911|ref|XP_004138227.1| PREDICTED: uncharacterized protein LOC101215825 [Cucumis sativus]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/415 (76%), Positives = 364/415 (87%), Gaps = 1/415 (0%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           M+WRRVLKSVQA+ AH  L  FTLLLVLKLDH +S+SWW+VFFP+W+FH VVARGRFSLP
Sbjct: 8   MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVVFFPLWVFHVVVARGRFSLP 67

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           APS+PHNRHWAPCHA+VATPLLIAFELLLC+YLES+  +GF AVNLKIVFLPLLAFEI I
Sbjct: 68  APSLPHNRHWAPCHAVVATPLLIAFELLLCVYLESLSVYGFTAVNLKIVFLPLLAFEIII 127

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
           LIDNFRMCR+LMPGD+ESM+DEAIWE LPHFWVAISMVFFVAATV  +L   G VGALGW
Sbjct: 128 LIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATVLIMLTFVGNVGALGW 187

Query: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRP-ATSSSAITYLDWNSGLVVSAEEEQN 239
           WDLFINFGIAECFAFLVCTKWSNP IHR+ QTR   +SSS + YLDWNSGL+V  E++Q+
Sbjct: 188 WDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRERCSSSSVVRYLDWNSGLIVYPEQDQH 247

Query: 240 PDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFS 299
            D +CGL DIGGHIMK+P+I FQ+LLCM+LEGTPA A+N+ LP+LFSPLF+LQG  V+++
Sbjct: 248 QDRICGLQDIGGHIMKIPIIIFQILLCMYLEGTPAAAKNMPLPILFSPLFMLQGAAVIYA 307

Query: 300 TTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVH 359
           T+RL+EK V+LLR G+GT +YF  S RAH C  F H GSRLLGWWSIDE SRE+QARL H
Sbjct: 308 TSRLLEKAVLLLRGGSGTALYFSFSIRAHACLEFFHHGSRLLGWWSIDESSREEQARLYH 367

Query: 360 ENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
           E +SGYNTF GYPPEVVKKMPKK+LAEEVWRLQAALG+Q+EIT YS+QE+ERLQN
Sbjct: 368 EGASGYNTFSGYPPEVVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQN 422

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563101|ref|XP_003549804.1| PREDICTED: uncharacterized protein LOC100791390 isoform 2 [Glycine max]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/414 (78%), Positives = 362/414 (87%), Gaps = 6/414 (1%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           MSWRRVL S QA+AAH+ LL FTL LVLKLDH +S SWW++F P+W+FH VVARGRFSLP
Sbjct: 1   MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHNLSCSWWVIFSPLWMFHGVVARGRFSLP 60

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           APS P NR+WAPCHA++ATPLLIAFELLLCIYLES+Y      V+LKIVFLPLL FEI I
Sbjct: 61  APSAPRNRNWAPCHAVIATPLLIAFELLLCIYLESLY------VDLKIVFLPLLTFEIII 114

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
           LIDNFRMC+ALMPGDEE+M+DEAIWE LPHFWVAISMVFF+AATVFTLLKL G VGALGW
Sbjct: 115 LIDNFRMCKALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGW 174

Query: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNP 240
           WDLFINF IAECFAFLVCTKWSNPVIHR+ +   ++SS+ ITYLDWNSGLVVS +E Q+ 
Sbjct: 175 WDLFINFAIAECFAFLVCTKWSNPVIHRNSREASSSSSTTITYLDWNSGLVVSTDENQHQ 234

Query: 241 DGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFST 300
             MC L DIGGH MKVP+I FQVLLCMHLEGTPA A +I LPV+FSPLFLLQG GV+ S 
Sbjct: 235 GRMCSLQDIGGHFMKVPIIVFQVLLCMHLEGTPACAVHIPLPVIFSPLFLLQGAGVMLSA 294

Query: 301 TRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 360
           ++L EK+V+LLRSGAG GIYFR SSRAHDC GFLH GSRLLGWWSIDEGSRE+QARL HE
Sbjct: 295 SKLGEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHE 354

Query: 361 NSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
            + GYNTFCGYPPE+VKKMPKKELAEEVWRLQAALG+Q+EIT +S+QE+ERLQN
Sbjct: 355 GAIGYNTFCGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQN 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636236|gb|ACU18459.1| unknown [Glycine max]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/414 (77%), Positives = 358/414 (86%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           MSWRRVL S QA+AAH+ LL FTL LVLKLDH +S SWW++F P+W+FH VVARGRFSLP
Sbjct: 1   MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHNLSSSWWVIFLPLWMFHGVVARGRFSLP 60

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           APS P NR+WAPCHA+VATPLLIAFELLLCIYLES+Y+ G+ AV LKIVFLPLL FEI I
Sbjct: 61  APSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESLYDRGYAAVGLKIVFLPLLTFEIII 120

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
           LIDNFRMC+ALMPGD E+M+DEAIWE LPHFWVAISMVFFVAATVFTLLKL G VGALGW
Sbjct: 121 LIDNFRMCKALMPGDGENMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGDVGALGW 180

Query: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNP 240
           WDLFINF IAECFAFLVCTKWSNPVIHR+ +   ++SS+ I YLDWNSGLVVS +E Q  
Sbjct: 181 WDLFINFIIAECFAFLVCTKWSNPVIHRNSREASSSSSTTIGYLDWNSGLVVSTDENQPQ 240

Query: 241 DGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFST 300
             +C L DIGGH MK+P+I FQVLLCMHLEGTPA A  I LPV+FSPLFLLQG GV+ S 
Sbjct: 241 GRICSLQDIGGHFMKIPIIVFQVLLCMHLEGTPACAVYIPLPVIFSPLFLLQGAGVLLSA 300

Query: 301 TRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 360
           ++L EK+V+LLRSGAG GIYFR SSRAHDC GFL  GSRLLGWWSIDEGSRE+ ARL HE
Sbjct: 301 SKLGEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLCHGSRLLGWWSIDEGSREEHARLYHE 360

Query: 361 NSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
            + GYNTF GYPPE+VKKMPKKELAEEVWRLQAALG+Q+EIT +S+QE+ERLQN
Sbjct: 361 GAIGYNTFSGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQN 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073444|gb|ACJ85081.1| unknown [Medicago truncatula]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/414 (78%), Positives = 365/414 (88%), Gaps = 1/414 (0%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           MSW RVLKS QA AAH+ LL FTLLL+LKLDH IS SWWI+F P+W+FH VVARGRFSLP
Sbjct: 1   MSWSRVLKSAQAFAAHTFLLCFTLLLLLKLDHRISSSWWIIFAPLWMFHGVVARGRFSLP 60

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           APS P NRHWAPCHA+VA PLLIAFELLLCIYLES+Y  GF AV+LKIVFLPLL FEI I
Sbjct: 61  APSAPRNRHWAPCHAVVAMPLLIAFELLLCIYLESLYVRGFAAVDLKIVFLPLLTFEIII 120

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
           LIDNFRMC+ALMPGDEESM+DEAIWE LPHFWVAISMVFFVAATVFTLLKL G V +LGW
Sbjct: 121 LIDNFRMCKALMPGDEESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGSVASLGW 180

Query: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNP 240
           WDLFINF IAECFAFLVCTKWSNPVIHRS +  P++S++ I YLDWNSGL+VS+EE+Q P
Sbjct: 181 WDLFINFAIAECFAFLVCTKWSNPVIHRSSR-EPSSSTTTIRYLDWNSGLLVSSEEDQRP 239

Query: 241 DGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFST 300
            GMC L DIGGH MKVPVI FQVLLCMHLEGTPA A ++ L VLFSPLF+LQGVGV+ S 
Sbjct: 240 AGMCSLQDIGGHFMKVPVIVFQVLLCMHLEGTPAFAAHLPLAVLFSPLFVLQGVGVLLSA 299

Query: 301 TRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 360
           ++  EK+V+LLRSGAG G+YFR+SSRAHDC GFLH GSRLLGWWSIDEGSRE++ARL HE
Sbjct: 300 SKFAEKLVLLLRSGAGRGLYFRLSSRAHDCSGFLHHGSRLLGWWSIDEGSREERARLYHE 359

Query: 361 NSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
            +SGYN F GYPPE+VKKMPK++LAEEVWRLQAALG+Q+EIT YS+QE+ERL+N
Sbjct: 360 GASGYNAFSGYPPEIVKKMPKRDLAEEVWRLQAALGEQTEITKYSQQEYERLKN 413

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511601|ref|XP_003524512.1| PREDICTED: uncharacterized protein LOC100810936 isoform 1 [Glycine max]

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/414 (77%), Positives = 358/414 (86%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           MSWRRVL S QA+AAH+ LL FTL LVLKLDH +S SWW++F P+W+FH VVARGRFSLP
Sbjct: 1   MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHNLSSSWWVIFLPLWMFHGVVARGRFSLP 60

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           APS P NR+WAPCHA+VATPLLIAFELLLCIYLES+Y+ G+ AV LKIVFLPLL FEI I
Sbjct: 61  APSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESLYDRGYAAVGLKIVFLPLLTFEIII 120

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
           LIDNFRMC+ALMPGD E+M+DEAIWE LPHFWVAISMVFFVAATVFTLLKL G VGALGW
Sbjct: 121 LIDNFRMCKALMPGDGENMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGDVGALGW 180

Query: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNP 240
           WDLFINF IAECFAFLVCTKWSNPVIHR+ +   ++SS+ I YLDWNSGLVVS +E Q  
Sbjct: 181 WDLFINFIIAECFAFLVCTKWSNPVIHRNSREASSSSSTTIGYLDWNSGLVVSTDENQPQ 240

Query: 241 DGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFST 300
             +C L DIGGH MK+P+I FQVLLCMHLEGTPA A  I LPV+FSPLFLLQG GV+ S 
Sbjct: 241 GRICSLQDIGGHFMKIPIIVFQVLLCMHLEGTPACAVYIPLPVIFSPLFLLQGAGVLLSA 300

Query: 301 TRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 360
           ++L EK+V+LLRSGAG GIYFR SSRAHDC GFL  GSRLLGWWSIDEGSRE+ ARL HE
Sbjct: 301 SKLGEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLCHGSRLLGWWSIDEGSREEHARLYHE 360

Query: 361 NSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
            + GYNTF GYPPE+VKKMPKKELAEEVWRLQAALG+Q+EIT +S+QE+ERLQN
Sbjct: 361 GAIGYNTFSGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQN 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	500
TAIR|locus:2014089	467	AT1G18470 [Arabidopsis thalian	0.828	0.886	0.708	2.5e-161
TAIR|locus:2031471	466	AT1G73950 [Arabidopsis thalian	0.82	0.879	0.711	3.1e-161
TAIR|locus:2012453	468	AT1G68820 [Arabidopsis thalian	0.812	0.867	0.637	8.4e-145

TAIR|locus:2014089 AT1G18470 [Arabidopsis thaliana (taxid:3702)]

 Score = 1571 (558.1 bits), Expect = 2.5e-161, P = 2.5e-161
 Identities = 294/415 (70%), Positives = 340/415 (81%)

Query:     1 MSWRRVLKSVQAVAAHSXXXXXXXXXXXXXDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
             MS RRVLKS+QA+AAHS             DH +S SWW+VFFP+W FHAVVARGRFSLP
Sbjct:     1 MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWWMVFFPLWAFHAVVARGRFSLP 60

Query:    61 APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
             AP  P NRHWAPCHA+VATPLL+AFELLLCIYLES Y     AV+LKI FLPLLAFE+TI
Sbjct:    61 APVAPRNRHWAPCHAVVATPLLVAFELLLCIYLESSYARWPPAVSLKIAFLPLLAFELTI 120

Query:   121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
             L+DN RMCRALMPGD++S+ D+AIWEALPHFWVAISMVF +AAT FTLLKL G V ALGW
Sbjct:   121 LVDNLRMCRALMPGDDDSITDDAIWEALPHFWVAISMVFTLAATFFTLLKLSGDVVALGW 180

Query:   181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSS-AITYLDWNSGLVVSAEEEQN 239
             WDLFINFGIAECFAFLVCTKWSNPVIHRS + R   SSS +I YLDWNSGLVV+ EE+++
Sbjct:   181 WDLFINFGIAECFAFLVCTKWSNPVIHRSSRARETGSSSTSIRYLDWNSGLVVAPEEDRH 240

Query:   240 PDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFS 299
              D  CGL DIGGH++K+PVI FQV+LCM+LEGTP  A++I++PVLFSPLFLLQG+GV+F+
Sbjct:   241 QDRWCGLQDIGGHMLKIPVILFQVVLCMYLEGTPERAKDISIPVLFSPLFLLQGLGVLFA 300

Query:   300 TTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVH 359
              ++L+EKIV+LLR  AG G+YFR SS AHDC GFLH GSRLLGWWSIDEGSRE+QARL  
Sbjct:   301 ASKLLEKIVLLLRGEAGPGLYFRFSSSAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYF 360

Query:   360 ENSSGYNTFCGYXXXXXXXXXXXXLAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
             +  SGYNTF G+            LAEEVWRLQAALG+Q+EIT +S+QE+ERLQN
Sbjct:   361 DQESGYNTFSGHPPEIVKKMPKEDLAEEVWRLQAALGEQTEITKFSQQEYERLQN 415

GO:0005576 "extracellular region" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2031471 AT1G73950 [Arabidopsis thaliana (taxid:3702)]

 Score = 1570 (557.7 bits), Expect = 3.1e-161, P = 3.1e-161
 Identities = 294/413 (71%), Positives = 335/413 (81%)

Query:     3 WRRVLKSVQAVAAHSXXXXXXXXXXXXXDHVISYSWWIVFFPVWIFHAVVARGRFSLPAP 62
             WR VLKSVQA  AH              DH I+YSWW+V  P+W FHAVVARGRFSLPAP
Sbjct:     4 WR-VLKSVQASVAHCFLFSFTLALVLKLDHSITYSWWVVCLPLWAFHAVVARGRFSLPAP 62

Query:    63 SVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILI 122
               P NRHWAPCHAIV+TPLLIAFELLLC+YLE+ Y     AV+LKIVFLPLLAFE+ IL+
Sbjct:    63 IAPRNRHWAPCHAIVSTPLLIAFELLLCVYLETAYADSPPAVSLKIVFLPLLAFEVIILV 122

Query:   123 DNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWD 182
             DN RMCRALMPGDEES+NDEA+WEALPHFWVAISMVFF+AATVFTLLKL G V ALGWWD
Sbjct:   123 DNARMCRALMPGDEESVNDEAVWEALPHFWVAISMVFFLAATVFTLLKLSGDVAALGWWD 182

Query:   183 LFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSA-ITYLDWNSGLVVSAEEEQNPD 241
             LFINFGIAECFAFLVCTKWSNPVIHRS + R   SSS  I YLDWNSGL V +E+++N D
Sbjct:   183 LFINFGIAECFAFLVCTKWSNPVIHRSSRDRETGSSSTNIRYLDWNSGLGVFSEDDRNQD 242

Query:   242 GMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTT 301
               CGL DIGGHIMK+P+I FQV+LCMHLEGTP  A++I++PVLFSPLFLLQGVGV+F+ +
Sbjct:   243 -TCGLQDIGGHIMKIPLIVFQVVLCMHLEGTPEAAKSISVPVLFSPLFLLQGVGVLFAAS 301

Query:   302 RLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHEN 361
             +L+EK+V+LLR    TG+YFR  SRAHDC GFLH GSRLLGWWSIDEGSRE++ARL  + 
Sbjct:   302 KLIEKVVLLLRGEDDTGLYFRFLSRAHDCLGFLHHGSRLLGWWSIDEGSREEEARLYFDQ 361

Query:   362 SSGYNTFCGYXXXXXXXXXXXXLAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
              SGYNTFCG+            LAEEVWRLQAALG+Q+EIT +S+QE+ERLQN
Sbjct:   362 ESGYNTFCGHPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQN 414

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2012453 AT1G68820 [Arabidopsis thaliana (taxid:3702)]

 Score = 1415 (503.2 bits), Expect = 8.4e-145, P = 8.4e-145
 Identities = 266/417 (63%), Positives = 321/417 (76%)

Query:     1 MSWRRVLKSVQAVAAHSXXXXXXXXXXXXXDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
             MSWRRV KS QA +AH              DHV+S+SWW VF P+W+FHAV+ARGRFSLP
Sbjct:     8 MSWRRVWKSFQAASAHCLLFSFTLLLALKLDHVVSHSWWFVFAPLWLFHAVIARGRFSLP 67

Query:    61 APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
             APS+PH+RHWAP H+++ATPLL+AFE+LLC++LE  Y      V+LKIVFLPLLAFE+ I
Sbjct:    68 APSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDKY-----VVDLKIVFLPLLAFEVAI 122

Query:   121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
             LIDN RMCR LMPGDEE+M+DEAIWE LPHFWV+ISMVFF+AAT FTLLKLCG V ALGW
Sbjct:   123 LIDNVRMCRTLMPGDEETMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGDVAALGW 182

Query:   181 WDLFINFGIAECFAFLVCTKWSNPVIHR-SPQTRPATSSSAITYLDWNSGLVVSAEEE-Q 238
             WDLFINFGIAECFAFLVCTKWSN  IHR S    P++SS  + YLDWN GLVV+A++E Q
Sbjct:   183 WDLFINFGIAECFAFLVCTKWSNQSIHRYSHIPEPSSSSMVVRYLDWNRGLVVTADDEHQ 242

Query:   239 NPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVF 298
               + +CGL DIGGH+MK+P + FQ++L M LEGTPA A+NI + VLF PLFLLQG GV+F
Sbjct:   243 QSNRICGLQDIGGHVMKIPFVTFQIILFMRLEGTPASAKNIPILVLFVPLFLLQGAGVLF 302

Query:   299 STTRLVEKIVILLRSGAGT-GIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARL 357
             +  RLVEK V+L+ SG+G+ G YF  +S A +  GF   G+RLLGWWSIDEGSRE+QARL
Sbjct:   303 AMYRLVEKSVLLINSGSGSYGRYFTATSSAREFLGFFQHGARLLGWWSIDEGSREEQARL 362

Query:   358 VHENSSGYNTFCGYXXXXXXXXXXXXLAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
                 ++GYNTF               L EE+WRLQAAL +Q++IT+YS+QE+ERLQN
Sbjct:   363 YSGEATGYNTF---SPEVVKKMPKSDLVEEIWRLQAALSEQTDITSYSQQEYERLQN 416


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.141   0.460    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      500       475   0.00078  119 3  11 22  0.42    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  628 (67 KB)
  Total size of DFA:  329 KB (2163 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  36.34u 0.10s 36.44t   Elapsed:  00:00:01
  Total cpu time:  36.34u 0.10s 36.44t   Elapsed:  00:00:01
  Start:  Sat May 11 14:23:27 2013   End:  Sat May 11 14:23:28 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XV000226 hypothetical protein (466 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	500
pfam10269	226	pfam10269, Tmemb_185A, Transmembrane Fragile-X-F p	1e-59
pfam10269	226	pfam10269, Tmemb_185A, Transmembrane Fragile-X-F p	0.004

>gnl|CDD|220666 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F protein

 Score =  195 bits (498), Expect = 1e-59
 Identities = 92/267 (34%), Positives = 119/267 (44%), Gaps = 44/267 (16%)

Query: 28  LKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFEL 87
           L+LD  IS+SWW VF P+WI+  VV  G F L A  V  N   A    +V   LL+AFEL
Sbjct: 1   LRLDGYISWSWWAVFAPLWIWKLVVLLGAFLLIAS-VSRNEFKAMLIGLVCHLLLLAFEL 59

Query: 88  LLCIYLESIYEHGFEAVNLKIVFLPLLA---FEITILIDNFRMCRALMPGDEESMNDEAI 144
           L+CI L         A+   IVF+PL A     I IL+  FR   +          D + 
Sbjct: 60  LVCIKLG-----LSGALLWSIVFIPLYALSVLSILILLWGFRFTMS----------DRSY 104

Query: 145 WEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNP 204
              L +    +  VF +A   F  LKL G V    WW +FI   I    AFLV       
Sbjct: 105 ELELFYAVNILQFVFAIAFFTFLALKLDGVV-DWSWWVVFIPLWIVLGLAFLVV------ 157

Query: 205 VIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVL 264
                          +I  L  N  L+VS +E      +  LS      + +P++ FQVL
Sbjct: 158 ---------LYLVIMSIRLLREN-NLLVSQDERALASAIGYLS----IFIVIPMLVFQVL 203

Query: 265 LCMHLEGTPAGARNIALPVLFSPLFLL 291
           L M L+G      NI + VLF PLF+L
Sbjct: 204 LEMRLDGDN----NIPIIVLFIPLFVL 226

This is a family of conserved transmembrane proteins that appear in humans to be expressed from a region upstream of the FragileXF site and to be intimately linked with the Fragile-X syndrome. Absence of TMEM185A does not necessarily lead to developmental delay, but might in combination with other, yet unknown, factors. Otherwise, the lack of the TMEM185A protein is either disposable (redundant) or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B. Length = 226

>gnl|CDD|220666 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F protein

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 23  TLLLVLKLDHVISYSWWIVFFPVWI---------FHAVVARGRFSLPAPSVPHNRHWAPC 73
              L LKLD V+ +SWW+VF P+WI          + V+   R       +      A  
Sbjct: 124 FTFLALKLDGVVDWSWWVVFIPLWIVLGLAFLVVLYLVIMSIRLLRENNLLVSQDERALA 183

Query: 74  HAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLL 114
            AI    + I   +L+   L  +   G   + + ++F+PL 
Sbjct: 184 SAIGYLSIFIVIPMLVFQVLLEMRLDGDNNIPIIVLFIPLF 224

This is a family of conserved transmembrane proteins that appear in humans to be expressed from a region upstream of the FragileXF site and to be intimately linked with the Fragile-X syndrome. Absence of TMEM185A does not necessarily lead to developmental delay, but might in combination with other, yet unknown, factors. Otherwise, the lack of the TMEM185A protein is either disposable (redundant) or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	500
PF10269	238	Tmemb_185A: Transmembrane Fragile-X-F protein ; In	100.0
KOG3879	267	consensus Predicted membrane protein [Function unk	100.0
KOG3879	267	consensus Predicted membrane protein [Function unk	99.79
PF10269	238	Tmemb_185A: Transmembrane Fragile-X-F protein ; In	99.47
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	86.28

>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome

Probab=100.00  E-value=1.5e-45  Score=359.09  Aligned_cols=232  Identities=49%  Similarity=0.810  Sum_probs=194.2

Q ss_pred             HhcCCccccchhHHHHHHHHHHHHHHhhcccCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHhccccccccccccee
Q 010814           28 LKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLK  107 (500)
Q Consensus        28 LKLDg~I~WSWwvVFiPLWI~d~lv~rg~f~~~~~~~~~rr~wa~~~smv~llLLL~FelLLC~KLEg~~~~~~~~l~w~  107 (500)
                      ||+||.++||||.||+|+|++|+++++|..........+++.++.+++....+++++||+|+|.||++...     .+|.
T Consensus         1 LrlD~~i~wsww~VF~Plw~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~lll~~f~~llc~~L~~~~~-----~~w~   75 (238)
T PF10269_consen    1 LRLDGVISWSWWIVFIPLWIWKAIVIVGAFVGIAVSRPRVDFKAMLISVVAHLLLLAFELLLCIKLEGGSS-----ISWS   75 (238)
T ss_pred             CccCceeeccHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCc-----ceee
Confidence            69999999999999999999999999988665544445566666677777778899999999999965555     7999


Q ss_pred             eehhhHHHHHH---HHHHHhhhhhhccCCCCCCccchHHHHhhhhHHHHHHHHHHHHHHHhhhhhhccCcccccceeehh
Q 010814          108 IVFLPLLAFEI---TILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLF  184 (500)
Q Consensus       108 iVFiPL~iLli---~l~I~~fr~Cr~lmpg~~rS~e~eai~~~l~~FwIaIsmlfll~f~IfLaLKLDg~~i~wsWwvVF  184 (500)
                      .||+|+|++..   ..+++++|+    |||+++++++++.+.+.++++..++++++++|++|++|||||. ++||||+||
T Consensus        76 ~VFiPL~~l~~~~I~~~i~~~r~----~~~~~e~~~~~~~~~~~~~~~~~l~~if~~~f~v~l~Lkld~~-i~~sW~~vF  150 (238)
T PF10269_consen   76 IVFIPLFVLSALSILICIWNFRH----MPGDGEEMSDRSIWFELPFFWNILSLIFFLAFTVFLALKLDGV-IDWSWWIVF  150 (238)
T ss_pred             eeeechhhHHHHHHHHHHHhhcc----CcccccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCc-ccccHHHHH
Confidence            99999987764   778899888    8999999999999999999999999999999999999999999 999999999


Q ss_pred             hHHHHHHHHHHhhccccCCCcccCCCCCCCCCCccchhhhhcccccccccccccCCCccchhh-hhhh--HHhHHHHHHH
Q 010814          185 INFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLS-DIGG--HIMKVPVIGF  261 (500)
Q Consensus       185 IPLwI~d~fa~Lvc~~~~np~i~~~~~~~~~sss~vl~y~~w~~gl~vrs~e~~~~qrr~~l~-~i~~--~lL~IpllvF  261 (500)
                      +|+|++||+++++|...               ....+++.+++++.       ..+||+.+.+ ++++  +++++|+++|
T Consensus       151 iPl~i~~~~~~~~~~~~---------------~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~l~F  208 (238)
T PF10269_consen  151 IPLWIADGLAFLVCLYS---------------IIMSIRYLDRNPGL-------LPSQRRSSLQSRICWGGLFLVIPLLVF  208 (238)
T ss_pred             HHHHHHHHHHHHHHHHH---------------HHHHHHHHhccCCC-------chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999874221               01133445554333       3445555555 6766  8899999999


Q ss_pred             HHHHHHhhcCCCCCCcCccchhhhHHHHHH
Q 010814          262 QVLLCMHLEGTPAGARNIALPVLFSPLFLL  291 (500)
Q Consensus       262 qILLc~KLeg~p~~~~~i~~~~VFiPLfIL  291 (500)
                      |++||+||||++..++++|+.+||+|+|++
T Consensus       209 ~vLL~~kLe~~~~~~~~~~~~~vf~PL~i~  238 (238)
T PF10269_consen  209 QVLLCMKLEGTPWSAANIPISVVFIPLFIL  238 (238)
T ss_pred             HHHHHHHhcCCccccccccHHHHHHHHHhC
Confidence            999999999987777799999999999974

The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].

>KOG3879 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=6.5e-37  Score=295.96  Aligned_cols=188  Identities=27%  Similarity=0.444  Sum_probs=171.5

Q ss_pred             HHHHHHHHHHHHHhcccccccccccceeeehhhHHHHHH---HHHHHhhhhhhccCCCCCCccchHHHHhhhhHHHHHHH
Q 010814           80 PLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEI---TILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAIS  156 (500)
Q Consensus        80 lLLL~FelLLC~KLEg~~~~~~~~l~w~iVFiPL~iLli---~l~I~~fr~Cr~lmpg~~rS~e~eai~~~l~~FwIaIs  156 (500)
                      +++++||+|.|+|||.+++      -|.+||+||+..++   ++|+|++||        |++++.|..        .++|
T Consensus         9 l~llmfe~lvcdkle~~~h------fw~lvf~plff~s~vsvgacvw~~Rh--------d~a~ele~~--------~avn   66 (267)
T KOG3879|consen    9 LLLLMFEVLVCDKLERDYH------FWLLVFMPLFFVSPVSVGACVWGFRH--------DLAFELEFT--------WAVN   66 (267)
T ss_pred             HHHHHHHHHHhhhhccCce------ehHHHHHHHHhcChhhhhhhhhhhhc--------chHHHHHHH--------HHHH
Confidence            7799999999999999998      79999999999875   899999999        999888777        6789


Q ss_pred             HHHHHHHHhhhhhhccCcccccceeehhhHHHHHHHHHHhhccccCCCcccCCCCCCCCCCccchhhhhccccccccccc
Q 010814          157 MVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEE  236 (500)
Q Consensus       157 mlfll~f~IfLaLKLDg~~i~wsWwvVFIPLwI~d~fa~Lvc~~~~np~i~~~~~~~~~sss~vl~y~~w~~gl~vrs~e  236 (500)
                      ++|    +||++||||.. ++|||.+||+|+||+|++++++                      ++||++|+ ++.+||.|
T Consensus        67 ilq----lIflaLKLD~~-v~WnW~VVFvPlWI~~sil~V~----------------------VLy~iv~s-~~~lrs~~  118 (267)
T KOG3879|consen   67 ILQ----LIFLALKLDKI-VHWNWFVVFVPLWIFDSILLVV----------------------VLYKIVWS-VLFLRSRD  118 (267)
T ss_pred             HHH----HHHHHHhcCcc-cCCceEEEeehHHHHHHHHHHH----------------------HHHHHHHH-HHhccccc
Confidence            999    99999999999 9999999999999999999998                      99999999 99999999


Q ss_pred             ccCCCccchhh-hhhhHHhHHHHHHHHHHHHHhhcCCCCCCc-CccchhhhHHHHHHHHHHHHHhhhhhHHHhhHhhhcC
Q 010814          237 EQNPDGMCGLS-DIGGHIMKVPVIGFQVLLCMHLEGTPAGAR-NIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSG  314 (500)
Q Consensus       237 ~~~~qrr~~l~-~i~~~lL~IpllvFqILLc~KLeg~p~~~~-~i~~~~VFiPLfILq~~~vlf~~~~l~~~~~~~~~~~  314 (500)
                      ...+||+.++. ++.+...++|+++||++||.||||    +. .+||+++|+|+|++...++...+            +.
T Consensus       119 v~p~~rr~~l~~ai~~i~~Vlp~Laf~VlLc~KLdg----~~t~~sy~~vfaPLwlsl~t~i~~s~------------~k  182 (267)
T KOG3879|consen  119 VIPEQRRTHLTMAIWNITIVLPLLAFQVLLCHKLDG----HNTTFSYIVVFAPLWLSLLTAIATSG------------SK  182 (267)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ccccceEEEEHHHHHHHHHHHHHHhc------------cC
Confidence            99999999999 888888999999999999999998    44 79999999999998666554433            26


Q ss_pred             CCCceeEeeccccccchhhccc
Q 010814          315 AGTGIYFRISSRAHDCFGFLHR  336 (500)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~  336 (500)
                      +||.|||++.   +|.++||-.
T Consensus       183 ggn~wwFGiR---k~fcqflle  201 (267)
T KOG3879|consen  183 GGNHWWFGIR---KDFCQFLLE  201 (267)
T ss_pred             CCceEEEEec---chHHHHHHH
Confidence            7899999999   999999853

>KOG3879 consensus Predicted membrane protein [Function unknown]

Probab=99.79  E-value=1.1e-19  Score=176.78  Aligned_cols=129  Identities=25%  Similarity=0.468  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHh---------hcccCCCCCCCCcccccchh---h
Q 010814            8 KSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVAR---------GRFSLPAPSVPHNRHWAPCH---A   75 (500)
Q Consensus         8 ~~~~a~~~~~~LLlFtILLaLKLDg~I~WSWwvVFiPLWI~d~lv~r---------g~f~~~~~~~~~rr~wa~~~---s   75 (500)
                      ++++..++|+.-++|+|++|||||.+++|||.+||+|+||+|++.+.         +.+.|+++..++.+.-....   .
T Consensus        55 ~a~ele~~~avnilqlIflaLKLD~~v~WnW~VVFvPlWI~~sil~V~VLy~iv~s~~~lrs~~v~p~~rr~~l~~ai~~  134 (267)
T KOG3879|consen   55 LAFELEFTWAVNILQLIFLALKLDKIVHWNWFVVFVPLWIFDSILLVVVLYKIVWSVLFLRSRDVIPEQRRTHLTMAIWN  134 (267)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCcccCCceEEEeehHHHHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHH
Confidence            45578899999999999999999999999999999999999998884         22666666666644332222   2


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHHHHHHHHHHhhhhhhccCCCCCCccchHHHHhhhhHHHHHH
Q 010814           76 IVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAI  155 (500)
Q Consensus        76 mv~llLLL~FelLLC~KLEg~~~~~~~~l~w~iVFiPL~iLli~l~I~~fr~Cr~lmpg~~rS~e~eai~~~l~~FwIaI  155 (500)
                      ++.++++++||++||.||||+.++    ++++.||+|+|+++.++++..++.                   |.|+||+++
T Consensus       135 i~~Vlp~Laf~VlLc~KLdg~~t~----~sy~~vfaPLwlsl~t~i~~s~~k-------------------ggn~wwFGi  191 (267)
T KOG3879|consen  135 ITIVLPLLAFQVLLCHKLDGHNTT----FSYIVVFAPLWLSLLTAIATSGSK-------------------GGNHWWFGI  191 (267)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccc----ceEEEEHHHHHHHHHHHHHHhccC-------------------CCceEEEEe
Confidence            466788999999999999988743    899999999999999888765543                   468888888


Q ss_pred             HHHH
Q 010814          156 SMVF  159 (500)
Q Consensus       156 smlf  159 (500)
                      +-.+
T Consensus       192 Rk~f  195 (267)
T KOG3879|consen  192 RKDF  195 (267)
T ss_pred             cchH
Confidence            6555

>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome

Probab=99.47  E-value=2.3e-13  Score=133.49  Aligned_cols=171  Identities=23%  Similarity=0.320  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHhhc-----c-cCCCCCCCCcccccc-hhhH--HHHHHH
Q 010814           12 AVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGR-----F-SLPAPSVPHNRHWAP-CHAI--VATPLL   82 (500)
Q Consensus        12 a~~~~~~LLlFtILLaLKLDg~I~WSWwvVFiPLWI~d~lv~rg~-----f-~~~~~~~~~rr~wa~-~~sm--v~llLL   82 (500)
                      ....+.+++.|.+++|.||++.-+.+|..||+|+|+..++.+...     + ..+.+...++..|.. .+..  +..+..
T Consensus        48 ~~~~~lll~~f~~llc~~L~~~~~~~w~~VFiPL~~l~~~~I~~~i~~~r~~~~~~e~~~~~~~~~~~~~~~~~l~~if~  127 (238)
T PF10269_consen   48 SVVAHLLLLAFELLLCIKLEGGSSISWSIVFIPLFVLSALSILICIWNFRHMPGDGEEMSDRSIWFELPFFWNILSLIFF  127 (238)
T ss_pred             HHHHHHHHHHHHHHheeecCCCCcceeeeeeechhhHHHHHHHHHHHhhccCcccccCCCCchhhhhhhHHHHHHHHHHH
Confidence            457888999999999999988899999999999998887766422     2 111122223333322 1222  333556


Q ss_pred             HHHHHHHHHHhcccccccccccceeeehhhHHHHHHHHHH----HhhhhhhccCCCCCCccchHHHHhhhhHH-HH-HHH
Q 010814           83 IAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILI----DNFRMCRALMPGDEESMNDEAIWEALPHF-WV-AIS  156 (500)
Q Consensus        83 L~FelLLC~KLEg~~~~~~~~l~w~iVFiPL~iLli~l~I----~~fr~Cr~lmpg~~rS~e~eai~~~l~~F-wI-aIs  156 (500)
                      ++|.++++.|||+..+     ++|..||+|+|+......+    .....++......+...+++.- +..... +. ..-
T Consensus       128 ~~f~v~l~Lkld~~i~-----~sW~~vFiPl~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  201 (238)
T PF10269_consen  128 LAFTVFLALKLDGVID-----WSWWIVFIPLWIADGLAFLVCLYSIIMSIRYLDRNPGLLPSQRRS-SLQSRICWGGLFL  201 (238)
T ss_pred             HHHHHHHHHhcCCccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHH-HHHHHHHHHHHHH
Confidence            7899999999999988     9999999999999873322    3333443333322222221111 001111 10 123


Q ss_pred             HHHHHHHHhhhhhhccCccc----ccceeehhhHHHH
Q 010814          157 MVFFVAATVFTLLKLCGYVG----ALGWWDLFINFGI  189 (500)
Q Consensus       157 mlfll~f~IfLaLKLDg~~i----~wsWwvVFIPLwI  189 (500)
                      +..+++|.++++.||||+ .    +.+...+|+|+|+
T Consensus       202 ~i~~l~F~vLL~~kLe~~-~~~~~~~~~~~vf~PL~i  237 (238)
T PF10269_consen  202 VIPLLVFQVLLCMKLEGT-PWSAANIPISVVFIPLFI  237 (238)
T ss_pred             HHHHHHHHHHHHHHhcCC-ccccccccHHHHHHHHHh
Confidence            444688999999999999 6    7899999999997

The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.28  E-value=0.25  Score=48.63  Aligned_cols=118  Identities=6%  Similarity=-0.124  Sum_probs=93.2

Q ss_pred             hhhhHHHHHHHHHHHHHhhhhhHHHhhHhhhcCCCC-ceeEeeccccccchhhcccccccccccccCCCChhhhhhhhhc
Q 010814          282 PVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGT-GIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE  360 (500)
Q Consensus       282 ~~VFiPLfILq~~~vlf~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gsrl~~~~s~d~~~~~~~~~~~~~  360 (500)
                      ..-+.|...-.+++.+..+.....+..-.-.++.++ .+|+....+....-....||-.-..||.++++....|.++...
T Consensus        42 ~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~~w~~~a~~ne~~~~~l~~nl~q~~~~~  121 (207)
T KOG1100|consen   42 LEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQIWRDRAQTNEATVNSLRTNLDQVLAQC  121 (207)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHHHHHHHHHhChHHHHHHHHHHHHHHHhc
Confidence            344566666656666555554444443333344444 7889888999988999999999999999999999999999877


Q ss_pred             CCCccccccCCChhHhhcCChhHHHHHHHHHHHhhchhhhhhcccHHHHHhhcccee
Q 010814          361 NSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVIL  417 (500)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (500)
                                 + +.++++++.+..+..|+++.+-.      +|+++++++.+|+..
T Consensus       122 -----------~-~~~~~~~~~~~~~g~~~~~~~~s------~~~~~~~~~~~~~~~  160 (207)
T KOG1100|consen  122 -----------P-ASAPAEERGQKSCGDREADDGKS------SYVDPSVDNFKRMRS  160 (207)
T ss_pred             -----------c-cccCchhhhccccCccccccccc------cccchhhhhhhcccc
Confidence                       5 88999999999999999988765      899999999999985

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00