Citrus Sinensis ID: 010814


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500
MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEHHHHHHHHHHHHHEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcHHHccHHHHHHHHHEEccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHcccHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccEEEEccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEHEHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHHHHHHccccccEcccccccccccccEEEEEcccccEEEcccccccccccccccccccHHEHcHEHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHccccEEEEEEcccccHHHHHHHHEcccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEHEEEHccccc
MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVArgrfslpapsvphnrhwapchaivATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMcralmpgdeesmndEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCtkwsnpvihrspqtrpatsssaityldwnsglvvsaeeeqnpdgmcglsdigghimkvPVIGFQVLLCMHlegtpagarnialpvlfsPLFLLQGVGVVFSTTRLVEKIVILLRSgagtgiyfrissrahdcfgflhrgsrllgwwsidegsredQARLVHenssgyntfcgyppevvkkmpkkELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNpvihrspqtrpatsssaityLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHenssgyntfcgyppEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
MSWRRVLKSVQAVAAHSllltftlllvlklDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYppevvkkmpkkeLAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
****RVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIH************AITYLDWNSGLVVSA******DGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEG*******LVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMI*
********SVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVI*****************LDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQ***********FERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
********SVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHR*********SSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
*SWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHR********SSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLWETVHEWNLFVLCSFLAVMRAYFLIVLYRKKCYVEFALREILVSSCFHVGIVSFAGMII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query500
224132996466 predicted protein [Populus trichocarpa] 0.828 0.888 0.806 0.0
225455850466 PREDICTED: uncharacterized protein LOC10 0.826 0.886 0.828 0.0
224118894467 predicted protein [Populus trichocarpa] 0.828 0.886 0.795 0.0
449477080467 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.828 0.886 0.775 0.0
356563099466 PREDICTED: uncharacterized protein LOC10 0.828 0.888 0.785 0.0
449440911474 PREDICTED: uncharacterized protein LOC10 0.828 0.873 0.763 0.0
356563101460 PREDICTED: uncharacterized protein LOC10 0.816 0.886 0.780 0.0
255636236444 unknown [Glycine max] 0.828 0.932 0.772 0.0
217073444465 unknown [Medicago truncatula] 0.826 0.888 0.785 0.0
356511601466 PREDICTED: uncharacterized protein LOC10 0.828 0.888 0.772 0.0
>gi|224132996|ref|XP_002321460.1| predicted protein [Populus trichocarpa] gi|222868456|gb|EEF05587.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/414 (80%), Positives = 371/414 (89%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           M+WRRVLKSVQA+AAH LL +FTL LVLKLDHV+SYSWW++FFP+W FH VVARGRFSLP
Sbjct: 1   MNWRRVLKSVQALAAHCLLFSFTLFLVLKLDHVVSYSWWLIFFPLWTFHVVVARGRFSLP 60

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           APSVP NRHWAPCHA+VATPLLIAFELLLCIYLES+Y +   AVNLKIVF+PLLAFE+ I
Sbjct: 61  APSVPRNRHWAPCHAVVATPLLIAFELLLCIYLESVYVYHIAAVNLKIVFIPLLAFEVII 120

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
           LIDNFRMC+ALMPG+EES++DEAIWE LPHFWVAISMVFFVAATVFTLLKL G VGALGW
Sbjct: 121 LIDNFRMCKALMPGEEESISDEAIWETLPHFWVAISMVFFVAATVFTLLKLGGDVGALGW 180

Query: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNP 240
           WDLFINF IAECFAFLVCTKWSNPVIHR+ QTR A+SS  I YLDWN GL+VS EE Q+ 
Sbjct: 181 WDLFINFSIAECFAFLVCTKWSNPVIHRNSQTREASSSMTIRYLDWNGGLMVSPEENQHQ 240

Query: 241 DGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFST 300
           D MCGL DIGGH+MK+P+IGFQVLLCMHLEGTPAGARNI L VLFSPLFLLQG GV+F+ 
Sbjct: 241 DRMCGLQDIGGHLMKIPLIGFQVLLCMHLEGTPAGARNIPLLVLFSPLFLLQGAGVLFAA 300

Query: 301 TRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 360
           ++L EK+V+LLRS AGTG YF  SSRAHDC GFLH GSRLLGWWSIDEGS+E+QARL H 
Sbjct: 301 SKLAEKLVLLLRSEAGTGRYFTFSSRAHDCLGFLHHGSRLLGWWSIDEGSQEEQARLYHM 360

Query: 361 NSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
             + YNTFCGYPPE+VKKMPKK+LAEEVWRLQAALG+Q+EIT YS+QEFERLQN
Sbjct: 361 GDASYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEFERLQN 414




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455850|ref|XP_002273782.1| PREDICTED: uncharacterized protein LOC100256061 [Vitis vinifera] gi|297734166|emb|CBI15413.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224118894|ref|XP_002317932.1| predicted protein [Populus trichocarpa] gi|222858605|gb|EEE96152.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449477080|ref|XP_004154923.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101215825 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563099|ref|XP_003549803.1| PREDICTED: uncharacterized protein LOC100791390 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449440911|ref|XP_004138227.1| PREDICTED: uncharacterized protein LOC101215825 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563101|ref|XP_003549804.1| PREDICTED: uncharacterized protein LOC100791390 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|255636236|gb|ACU18459.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|217073444|gb|ACJ85081.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356511601|ref|XP_003524512.1| PREDICTED: uncharacterized protein LOC100810936 isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query500
TAIR|locus:2014089467 AT1G18470 [Arabidopsis thalian 0.828 0.886 0.708 2.5e-161
TAIR|locus:2031471466 AT1G73950 [Arabidopsis thalian 0.82 0.879 0.711 3.1e-161
TAIR|locus:2012453468 AT1G68820 [Arabidopsis thalian 0.812 0.867 0.637 8.4e-145
TAIR|locus:2014089 AT1G18470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1571 (558.1 bits), Expect = 2.5e-161, P = 2.5e-161
 Identities = 294/415 (70%), Positives = 340/415 (81%)

Query:     1 MSWRRVLKSVQAVAAHSXXXXXXXXXXXXXDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
             MS RRVLKS+QA+AAHS             DH +S SWW+VFFP+W FHAVVARGRFSLP
Sbjct:     1 MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWWMVFFPLWAFHAVVARGRFSLP 60

Query:    61 APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
             AP  P NRHWAPCHA+VATPLL+AFELLLCIYLES Y     AV+LKI FLPLLAFE+TI
Sbjct:    61 APVAPRNRHWAPCHAVVATPLLVAFELLLCIYLESSYARWPPAVSLKIAFLPLLAFELTI 120

Query:   121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
             L+DN RMCRALMPGD++S+ D+AIWEALPHFWVAISMVF +AAT FTLLKL G V ALGW
Sbjct:   121 LVDNLRMCRALMPGDDDSITDDAIWEALPHFWVAISMVFTLAATFFTLLKLSGDVVALGW 180

Query:   181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSS-AITYLDWNSGLVVSAEEEQN 239
             WDLFINFGIAECFAFLVCTKWSNPVIHRS + R   SSS +I YLDWNSGLVV+ EE+++
Sbjct:   181 WDLFINFGIAECFAFLVCTKWSNPVIHRSSRARETGSSSTSIRYLDWNSGLVVAPEEDRH 240

Query:   240 PDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGTPAGARNIALPVLFSPLFLLQGVGVVFS 299
              D  CGL DIGGH++K+PVI FQV+LCM+LEGTP  A++I++PVLFSPLFLLQG+GV+F+
Sbjct:   241 QDRWCGLQDIGGHMLKIPVILFQVVLCMYLEGTPERAKDISIPVLFSPLFLLQGLGVLFA 300

Query:   300 TTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVH 359
              ++L+EKIV+LLR  AG G+YFR SS AHDC GFLH GSRLLGWWSIDEGSRE+QARL  
Sbjct:   301 ASKLLEKIVLLLRGEAGPGLYFRFSSSAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYF 360

Query:   360 ENSSGYNTFCGYXXXXXXXXXXXXLAEEVWRLQAALGQQSEITNYSRQEFERLQN 414
             +  SGYNTF G+            LAEEVWRLQAALG+Q+EIT +S+QE+ERLQN
Sbjct:   361 DQESGYNTFSGHPPEIVKKMPKEDLAEEVWRLQAALGEQTEITKFSQQEYERLQN 415




GO:0005576 "extracellular region" evidence=ISM
GO:0005739 "mitochondrion" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2031471 AT1G73950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012453 AT1G68820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pg.C_LG_XV000226
hypothetical protein (466 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query500
pfam10269226 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F p 1e-59
pfam10269226 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F p 0.004
>gnl|CDD|220666 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F protein Back     alignment and domain information
 Score =  195 bits (498), Expect = 1e-59
 Identities = 92/267 (34%), Positives = 119/267 (44%), Gaps = 44/267 (16%)

Query: 28  LKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFEL 87
           L+LD  IS+SWW VF P+WI+  VV  G F L A  V  N   A    +V   LL+AFEL
Sbjct: 1   LRLDGYISWSWWAVFAPLWIWKLVVLLGAFLLIAS-VSRNEFKAMLIGLVCHLLLLAFEL 59

Query: 88  LLCIYLESIYEHGFEAVNLKIVFLPLLA---FEITILIDNFRMCRALMPGDEESMNDEAI 144
           L+CI L         A+   IVF+PL A     I IL+  FR   +          D + 
Sbjct: 60  LVCIKLG-----LSGALLWSIVFIPLYALSVLSILILLWGFRFTMS----------DRSY 104

Query: 145 WEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNP 204
              L +    +  VF +A   F  LKL G V    WW +FI   I    AFLV       
Sbjct: 105 ELELFYAVNILQFVFAIAFFTFLALKLDGVV-DWSWWVVFIPLWIVLGLAFLVV------ 157

Query: 205 VIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVL 264
                          +I  L  N  L+VS +E      +  LS      + +P++ FQVL
Sbjct: 158 ---------LYLVIMSIRLLREN-NLLVSQDERALASAIGYLS----IFIVIPMLVFQVL 203

Query: 265 LCMHLEGTPAGARNIALPVLFSPLFLL 291
           L M L+G      NI + VLF PLF+L
Sbjct: 204 LEMRLDGDN----NIPIIVLFIPLFVL 226


This is a family of conserved transmembrane proteins that appear in humans to be expressed from a region upstream of the FragileXF site and to be intimately linked with the Fragile-X syndrome. Absence of TMEM185A does not necessarily lead to developmental delay, but might in combination with other, yet unknown, factors. Otherwise, the lack of the TMEM185A protein is either disposable (redundant) or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B. Length = 226

>gnl|CDD|220666 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 500
PF10269238 Tmemb_185A: Transmembrane Fragile-X-F protein ; In 100.0
KOG3879267 consensus Predicted membrane protein [Function unk 100.0
KOG3879267 consensus Predicted membrane protein [Function unk 99.79
PF10269238 Tmemb_185A: Transmembrane Fragile-X-F protein ; In 99.47
KOG1100207 consensus Predicted E3 ubiquitin ligase [Posttrans 86.28
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome Back     alignment and domain information
Probab=100.00  E-value=1.5e-45  Score=359.09  Aligned_cols=232  Identities=49%  Similarity=0.810  Sum_probs=194.2

Q ss_pred             HhcCCccccchhHHHHHHHHHHHHHHhhcccCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHhccccccccccccee
Q 010814           28 LKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLK  107 (500)
Q Consensus        28 LKLDg~I~WSWwvVFiPLWI~d~lv~rg~f~~~~~~~~~rr~wa~~~smv~llLLL~FelLLC~KLEg~~~~~~~~l~w~  107 (500)
                      ||+||.++||||.||+|+|++|+++++|..........+++.++.+++....+++++||+|+|.||++...     .+|.
T Consensus         1 LrlD~~i~wsww~VF~Plw~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~lll~~f~~llc~~L~~~~~-----~~w~   75 (238)
T PF10269_consen    1 LRLDGVISWSWWIVFIPLWIWKAIVIVGAFVGIAVSRPRVDFKAMLISVVAHLLLLAFELLLCIKLEGGSS-----ISWS   75 (238)
T ss_pred             CccCceeeccHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCc-----ceee
Confidence            69999999999999999999999999988665544445566666677777778899999999999965555     7999


Q ss_pred             eehhhHHHHHH---HHHHHhhhhhhccCCCCCCccchHHHHhhhhHHHHHHHHHHHHHHHhhhhhhccCcccccceeehh
Q 010814          108 IVFLPLLAFEI---TILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLF  184 (500)
Q Consensus       108 iVFiPL~iLli---~l~I~~fr~Cr~lmpg~~rS~e~eai~~~l~~FwIaIsmlfll~f~IfLaLKLDg~~i~wsWwvVF  184 (500)
                      .||+|+|++..   ..+++++|+    |||+++++++++.+.+.++++..++++++++|++|++|||||. ++||||+||
T Consensus        76 ~VFiPL~~l~~~~I~~~i~~~r~----~~~~~e~~~~~~~~~~~~~~~~~l~~if~~~f~v~l~Lkld~~-i~~sW~~vF  150 (238)
T PF10269_consen   76 IVFIPLFVLSALSILICIWNFRH----MPGDGEEMSDRSIWFELPFFWNILSLIFFLAFTVFLALKLDGV-IDWSWWIVF  150 (238)
T ss_pred             eeeechhhHHHHHHHHHHHhhcc----CcccccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCc-ccccHHHHH
Confidence            99999987764   778899888    8999999999999999999999999999999999999999999 999999999


Q ss_pred             hHHHHHHHHHHhhccccCCCcccCCCCCCCCCCccchhhhhcccccccccccccCCCccchhh-hhhh--HHhHHHHHHH
Q 010814          185 INFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLS-DIGG--HIMKVPVIGF  261 (500)
Q Consensus       185 IPLwI~d~fa~Lvc~~~~np~i~~~~~~~~~sss~vl~y~~w~~gl~vrs~e~~~~qrr~~l~-~i~~--~lL~IpllvF  261 (500)
                      +|+|++||+++++|...               ....+++.+++++.       ..+||+.+.+ ++++  +++++|+++|
T Consensus       151 iPl~i~~~~~~~~~~~~---------------~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~l~F  208 (238)
T PF10269_consen  151 IPLWIADGLAFLVCLYS---------------IIMSIRYLDRNPGL-------LPSQRRSSLQSRICWGGLFLVIPLLVF  208 (238)
T ss_pred             HHHHHHHHHHHHHHHHH---------------HHHHHHHHhccCCC-------chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999874221               01133445554333       3445555555 6766  8899999999


Q ss_pred             HHHHHHhhcCCCCCCcCccchhhhHHHHHH
Q 010814          262 QVLLCMHLEGTPAGARNIALPVLFSPLFLL  291 (500)
Q Consensus       262 qILLc~KLeg~p~~~~~i~~~~VFiPLfIL  291 (500)
                      |++||+||||++..++++|+.+||+|+|++
T Consensus       209 ~vLL~~kLe~~~~~~~~~~~~~vf~PL~i~  238 (238)
T PF10269_consen  209 QVLLCMKLEGTPWSAANIPISVVFIPLFIL  238 (238)
T ss_pred             HHHHHHHhcCCccccccccHHHHHHHHHhC
Confidence            999999999987777799999999999974



The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].

>KOG3879 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG3879 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome Back     alignment and domain information
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00